Citrus Sinensis ID: 001400
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1085 | 2.2.26 [Sep-21-2011] | |||||||
| O81016 | 1420 | ABC transporter G family | yes | no | 0.982 | 0.750 | 0.806 | 0.0 | |
| Q8GU87 | 1426 | Pleiotropic drug resistan | yes | no | 0.979 | 0.745 | 0.738 | 0.0 | |
| Q8GU88 | 1444 | Putative pleiotropic drug | yes | no | 0.971 | 0.729 | 0.627 | 0.0 | |
| Q8GU89 | 1450 | Pleiotropic drug resistan | no | no | 0.981 | 0.734 | 0.621 | 0.0 | |
| Q76CU2 | 1434 | Pleiotropic drug resistan | N/A | no | 0.972 | 0.735 | 0.609 | 0.0 | |
| Q8GU92 | 1464 | Probable pleiotropic drug | no | no | 0.982 | 0.728 | 0.613 | 0.0 | |
| O24367 | 1441 | Pleiotropic drug resistan | N/A | no | 0.976 | 0.734 | 0.611 | 0.0 | |
| Q0JLC5 | 1457 | Pleiotropic drug resistan | no | no | 0.979 | 0.729 | 0.613 | 0.0 | |
| A2WSH0 | 1457 | Pleiotropic drug resistan | N/A | no | 0.979 | 0.729 | 0.612 | 0.0 | |
| Q9M9E1 | 1423 | ABC transporter G family | no | no | 0.965 | 0.736 | 0.601 | 0.0 |
| >sp|O81016|AB32G_ARATH ABC transporter G family member 32 OS=Arabidopsis thaliana GN=ABCG32 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 1791 bits (4640), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 861/1067 (80%), Positives = 970/1067 (90%), Gaps = 1/1067 (0%)
Query: 1 MWNSAENVFSRTSSFRDEVEDEEALRWAALERLPTYARARRGIFKNVVGDVKEVDVSELA 60
MWNSAEN FSR++SF+DE+EDEE LRWAAL+RLPTY+R RRGIF+++VG+ KE+ + L
Sbjct: 1 MWNSAENAFSRSTSFKDEIEDEEELRWAALQRLPTYSRIRRGIFRDMVGEPKEIQIGNLE 60
Query: 61 VQEQRLVLDRLVNAVEDDPERFFDRMRKRCEAVDLELPKIEVRFQNLTVESFVHLGSRAL 120
EQRL+LDRLVN+VE+DPE+FF R+RKR +AVDL+ PKIEVRFQNL VESFVH+GSRAL
Sbjct: 61 ASEQRLLLDRLVNSVENDPEQFFARVRKRFDAVDLKFPKIEVRFQNLMVESFVHVGSRAL 120
Query: 121 PTIPNFIFNMTEALLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLA 180
PTIPNFI NM E LLR + + G R+KLTILD +SG+IRPSRLTLLLGPPSSGKTTLLLA
Sbjct: 121 PTIPNFIINMAEGLLRNIHVIGGKRNKLTILDGISGVIRPSRLTLLLGPPSSGKTTLLLA 180
Query: 181 LAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVG 240
LAGRLG +LQ SGKITYNG+ KE + PRTSAYVSQQDW VAEMTVR+TL+FAG+CQGVG
Sbjct: 181 LAGRLGTNLQTSGKITYNGYDLKEIIAPRTSAYVSQQDWHVAEMTVRQTLEFAGRCQGVG 240
Query: 241 SKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVG 300
KYDM+ ELARREK+AGI PDEDLDIFMKS ALGG +TSLVVEY+MKILGLDTCADTLVG
Sbjct: 241 FKYDMLLELARREKLAGIVPDEDLDIFMKSLALGGMETSLVVEYVMKILGLDTCADTLVG 300
Query: 301 DEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTT 360
DEM+KGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTT+QII Y++HST AL+GTT
Sbjct: 301 DEMIKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTHQIIMYMRHSTHALEGTT 360
Query: 361 VISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVT 420
VISLLQP+PE YELFDDVIL+SEGQI+YQGPR VLDFF+S+GF+CP RKNVADFLQEVT
Sbjct: 361 VISLLQPSPETYELFDDVILMSEGQIIYQGPRDEVLDFFSSLGFTCPDRKNVADFLQEVT 420
Query: 421 SKKDQEQYWSNPYLPYRYISPGKFAEAFHSYHTGKNLSEELAVPFDRRFNHPAALSTSKY 480
SKKDQ+QYWS P+ PYRY+ PGKFAEAF SY TGK L+++L VPFD+RFNH AALSTS+Y
Sbjct: 421 SKKDQQQYWSVPFRPYRYVPPGKFAEAFRSYPTGKKLAKKLEVPFDKRFNHSAALSTSQY 480
Query: 481 GEKRSELLKTSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHKTIDDGGLY 540
G K+SELLK +F WQ LMK+N+FIYVFKF+QLL+VALITMTVF RTTMHH TIDDG +Y
Sbjct: 481 GVKKSELLKINFAWQKQLMKQNAFIYVFKFVQLLLVALITMTVFCRTTMHHNTIDDGNIY 540
Query: 541 LGALYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIPTSLIESG 600
LG+LYFSMVIILFNGFTEV MLVAKLPVLYKHRDLHFYPSW YT+PSW LSIPTS+IES
Sbjct: 541 LGSLYFSMVIILFNGFTEVPMLVAKLPVLYKHRDLHFYPSWAYTLPSWLLSIPTSIIESA 600
Query: 601 FWVAVTYYVIGYDPNVVRFSRQLLLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSFAMLV 660
WVAVTYY IGYDP RF +Q LLYF LHQMS+GLFRV+GSLGR+MIVANTFGSFAMLV
Sbjct: 601 TWVAVTYYTIGYDPLFSRFLQQFLLYFSLHQMSLGLFRVMGSLGRHMIVANTFGSFAMLV 660
Query: 661 VMALGGFIISRDSIPKWWIWGFWVSPLMYAQNAASVNEFLGHSWDKKAGN-SNFSLGEAI 719
VM LGGFIISRDSIP WWIWG+W+SPLMYAQNAASVNEFLGH+W K AGN ++ SLG A+
Sbjct: 661 VMTLGGFIISRDSIPSWWIWGYWISPLMYAQNAASVNEFLGHNWQKTAGNHTSDSLGLAL 720
Query: 720 LRQRSLFPESYWYWIGVGAMLGYTLLFNALFTFFLSYLNPLGKQQAVVSKKELQERDRRR 779
L++RSLF +YWYWIGV A+LGYT+LFN LFT FL++LNP GK QAVVS++EL ER+++R
Sbjct: 721 LKERSLFSGNYWYWIGVAALLGYTVLFNILFTLFLAHLNPWGKFQAVVSREELDEREKKR 780
Query: 780 KGENVVIELREYLQRSSSLNGKYFKQKGMVLPFQPLSMAFGNINYFVDVPVELKQEGVLE 839
KG+ V+ELREYLQ S S++GKYFK +GMVLPFQPLS++F NINY+VDVP+ LK++G+LE
Sbjct: 781 KGDEFVVELREYLQHSGSIHGKYFKNRGMVLPFQPLSLSFSNINYYVDVPLGLKEQGILE 840
Query: 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQET 899
DRLQLLVN+TGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGG IEGD+YISG+PKRQET
Sbjct: 841 DRLQLLVNITGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGTIEGDVYISGFPKRQET 900
Query: 900 FARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGA 959
FARISGYCEQND+HSP LTV+ESLLFSA LRLP++I+ ETQRAFV EVMELVELTSLSGA
Sbjct: 901 FARISGYCEQNDVHSPCLTVVESLLFSACLRLPADIDSETQRAFVHEVMELVELTSLSGA 960
Query: 960 LIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGR 1019
L+GLPG++GLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGR
Sbjct: 961 LVGLPGVDGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGR 1020
Query: 1020 TIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGSKSCELIKYFE 1066
TIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG KSCELIKYFE
Sbjct: 1021 TIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGQKSCELIKYFE 1067
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May be a general defense protein. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8GU87|PDR6_ORYSJ Pleiotropic drug resistance protein 6 OS=Oryza sativa subsp. japonica GN=PDR6 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 1583 bits (4100), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 795/1076 (73%), Positives = 916/1076 (85%), Gaps = 13/1076 (1%)
Query: 1 MWNSAENVFSRTSSFRDEVEDEEALRWAALERLPTYARARRGIFKN-------VVGD--V 51
MW +AE F+R+ S+R+E +++EALRWAAL+RLPT ARARRG+ ++ V GD +
Sbjct: 1 MW-AAEAAFARSGSWREEEDEQEALRWAALQRLPTVARARRGLLRSPAPGEDRVQGDDAL 59
Query: 52 KEVDVSELAVQEQRLVLDRLVNAVEDDPERFFDRMRKRCEAVDLELPKIEVRFQNLTVES 111
EVDV+ L+ ++ ++DRL+ A D E FF R+R R +AV +E PKIEVR+++LTV++
Sbjct: 60 CEVDVAGLSPGDRTALVDRLL-ADSGDVEDFFRRIRSRFDAVQIEFPKIEVRYEDLTVDA 118
Query: 112 FVHLGSRALPTIPNFIFNMTEALLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPS 171
+VH+GSRALPTIPNFI NMTEA LR LRIYRG R KL ILD++SGIIRPSR+TLLLGPPS
Sbjct: 119 YVHVGSRALPTIPNFICNMTEAFLRHLRIYRGGRVKLPILDNVSGIIRPSRMTLLLGPPS 178
Query: 172 SGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLD 231
SGKTTLLLALAGRLG L+VSG ITYNGH EFVP RTSAYVSQQDW +EMTVRETL+
Sbjct: 179 SGKTTLLLALAGRLGPGLKVSGNITYNGHHLNEFVPQRTSAYVSQQDWHASEMTVRETLE 238
Query: 232 FAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGL 291
FAG+CQGVG KYDM+ EL RREK GIKPDEDLD+FMK+ AL G++TSLV EYIMK+ GL
Sbjct: 239 FAGRCQGVGIKYDMLVELLRREKNEGIKPDEDLDVFMKALALEGKQTSLVAEYIMKVYGL 298
Query: 292 DTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKH 351
D CADT+VGDEM+KGISGGQKKRLTTGELLVG ARVLFMDEIS GLDS+TTYQIIKYL+H
Sbjct: 299 DICADTIVGDEMIKGISGGQKKRLTTGELLVGSARVLFMDEISTGLDSATTYQIIKYLRH 358
Query: 352 STRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKN 411
ST ALDGTT+ISLLQPAPE YELFDDVIL+SEGQIVYQGPR +DFFA MGF CP+RKN
Sbjct: 359 STHALDGTTIISLLQPAPETYELFDDVILISEGQIVYQGPREYAVDFFAGMGFRCPERKN 418
Query: 412 VADFLQEVTSKKDQEQYWSNPYLPYRYISPGKFAEAFHSYHTGKNLSEELAVPFDRRFNH 471
VADFLQEV SKKDQ+QYW + PY+Y+S KFAEAF ++ GK L +ELAVP++R NH
Sbjct: 419 VADFLQEVLSKKDQQQYWCHYDYPYQYVSVSKFAEAFKTFVIGKRLHDELAVPYNRHRNH 478
Query: 472 PAALSTSKYGEKRSELLKTSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHH 531
PAALSTS YG +R ELLK++F WQ LLMKRNSFIYVFKFIQLL+VALITMTVFFR+TMH
Sbjct: 479 PAALSTSNYGVRRLELLKSNFQWQHLLMKRNSFIYVFKFIQLLLVALITMTVFFRSTMHR 538
Query: 532 KTIDDGGLYLGALYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALS 591
++DDG +YLGALYF++V+ILFNGFTEVS+LV KLP+LYKHRDLHFYP W YT+PSW LS
Sbjct: 539 DSVDDGIIYLGALYFAIVMILFNGFTEVSLLVTKLPILYKHRDLHFYPPWAYTLPSWLLS 598
Query: 592 IPTSLIESGFWVAVTYYVIGYDPNVVRFSRQLLLYFFLHQMSIGLFRVIGSLGRNMIVAN 651
IPTSLIESG WV VTYYV+GYDP R Q LL FFLHQ S+ LFRV+ SLGRNMIVAN
Sbjct: 599 IPTSLIESGMWVLVTYYVVGYDPQFTRCLGQFLLLFFLHQTSLALFRVMASLGRNMIVAN 658
Query: 652 TFGSFAMLVVMALGGFIISRDSIPKWWIWGFWVSPLMYAQNAASVNEFLGHSWDKKAGNS 711
TFGSFA+LVVM LGGFII+++SIP WWIWG+W+SP+MYAQNA SVNEFLGHSW ++ N
Sbjct: 659 TFGSFALLVVMILGGFIITKESIPAWWIWGYWISPMMYAQNAISVNEFLGHSWSQQFANQ 718
Query: 712 NFSLGEAILRQRSLFPESYWYWIGVGAMLGYTLLFNALFTFFLSYLNPLGKQQAVVSKKE 771
N +LGEAIL LF E YW+WIGVGA+ GY ++ N LFT FL+ LNP+G QAVVSK +
Sbjct: 719 NITLGEAILTGYGLFKEKYWFWIGVGALFGYAIVLNFLFTLFLTLLNPIGNIQAVVSKDD 778
Query: 772 LQERDRRRKGENVVIELREYLQRSSSLNGKYFK-QKGMVLPFQPLSMAFGNINYFVDVPV 830
+Q R RRK + +ELR YL S+SLNG K QKGMVLPFQPLSM F NINY+VDVP
Sbjct: 779 IQHRAPRRKNGKLALELRSYLH-SASLNGHNLKDQKGMVLPFQPLSMCFKNINYYVDVPA 837
Query: 831 ELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYI 890
ELK +G++EDRLQLL++VTGAFRPG+LTALVGVSGAGKTTLMDVLAGRKTGG+IEG I I
Sbjct: 838 ELKSQGIVEDRLQLLIDVTGAFRPGILTALVGVSGAGKTTLMDVLAGRKTGGLIEGSITI 897
Query: 891 SGYPKRQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMEL 950
SGYPK QETF RISGYCEQND+HSP LTV+ESLL+SA LRLPS +++ T+R FVEEVMEL
Sbjct: 898 SGYPKNQETFTRISGYCEQNDVHSPCLTVIESLLYSACLRLPSHVDVNTRRVFVEEVMEL 957
Query: 951 VELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRT 1010
VEL +LSGAL+GLPG+NGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDAR+AAIVMRT
Sbjct: 958 VELNALSGALVGLPGVNGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARSAAIVMRT 1017
Query: 1011 VRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGSKSCELIKYFE 1066
VRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGG+LIYAGPLGSKS L+++FE
Sbjct: 1018 VRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGQLIYAGPLGSKSRNLVEFFE 1073
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May be a general defense protein. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|Q8GU88|PDR7_ORYSJ Putative pleiotropic drug resistance protein 7 OS=Oryza sativa subsp. japonica GN=PDR7 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 1410 bits (3650), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 672/1071 (62%), Positives = 842/1071 (78%), Gaps = 17/1071 (1%)
Query: 7 NVFSRTSSFRDEVEDEEALRWAALERLPTYARARRGIFKNVVGDVKEVDVSELAVQEQRL 66
+ F R S R+E +DEEAL+WAA+E+LPTY R R+GI G V+EVD+ L +QE+R
Sbjct: 31 DAFGR--SVREE-DDEEALKWAAIEKLPTYDRMRKGIL--TAGGVEEVDIGGLGLQERRN 85
Query: 67 VLDRLVNAVEDDPERFFDRMRKRCEAVDLELPKIEVRFQNLTVESFVHLGSRALPTIPNF 126
+++RLV E+D ERF ++R R E V ++ P IEVRF+NL++++ ++G+R +PT NF
Sbjct: 86 LIERLVRTAEEDNERFLLKLRDRMERVGIDNPTIEVRFENLSIDAEAYVGNRGIPTFTNF 145
Query: 127 IFNMTEALLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLG 186
N +L +RI + ++IL D+SGIIRP R++LLLGPP SGKT+LLLALAG+L
Sbjct: 146 FSNKIMDVLSAMRIVSSGKRPISILHDISGIIRPGRMSLLLGPPGSGKTSLLLALAGKLD 205
Query: 187 HHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMI 246
L+VSG++TYNGH EFVP RTSAY+ Q D + EMTVRETL F+ +CQGVG++YDM+
Sbjct: 206 STLKVSGRVTYNGHDMDEFVPQRTSAYIGQHDLHIGEMTVRETLAFSARCQGVGTRYDML 265
Query: 247 TELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKG 306
TEL+RREK A IKPD D+D++MK+ ++ GQ+ S+V +YI+KILGL+ CADT+VGD M++G
Sbjct: 266 TELSRREKEASIKPDPDIDVYMKAISVEGQE-SVVTDYILKILGLEICADTMVGDAMIRG 324
Query: 307 ISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQ 366
ISGGQKKR+TTGE+LVGPA+ LFMDEIS GLDSSTTYQI+ L+ S L GT +I+LLQ
Sbjct: 325 ISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTYQIVNSLRQSVHILGGTALIALLQ 384
Query: 367 PAPEAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVTSKKDQE 426
PAPE Y+LFDD++LLSEGQIVYQGPR ++L+FF +MGF CP+RK VADFLQEVTS+KDQ
Sbjct: 385 PAPETYDLFDDIVLLSEGQIVYQGPRENILEFFEAMGFKCPERKGVADFLQEVTSRKDQH 444
Query: 427 QYWSNPYLPYRYISPGKFAEAFHSYHTGKNLSEELAVPFDRRFNHPAALSTSKYGEKRSE 486
QYW PYRYIS F+EAF +H G+NL EL VPFDR NHPAAL+TS+YG + E
Sbjct: 445 QYWCRRDEPYRYISVNDFSEAFKEFHVGRNLGSELRVPFDRTRNHPAALTTSRYGISKME 504
Query: 487 LLKTSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHKTIDDGGLYLGALYF 546
L K F+ + LLMKRNSF+Y+FK +QL+I+ I MTVF RT MH ++++DG ++LGA++
Sbjct: 505 LTKACFSREWLLMKRNSFVYIFKILQLIILGSIGMTVFLRTKMHRRSVEDGAIFLGAMFL 564
Query: 547 SMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIPTSLIESGFWVAVT 606
+V LFNGF E++M +AKLP+ YK RDL FYPSW Y +P+W L IP S +E W+ +T
Sbjct: 565 GLVTHLFNGFAELAMSIAKLPIFYKQRDLLFYPSWAYALPTWVLKIPISFLECAVWICMT 624
Query: 607 YYVIGYDPNVVRFSRQLLLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSFAMLVVMALGG 666
YYV+G+DPN+ RF R +L + QM+ GLFR++ +LGR M+VA+TFGSFA L+++ LGG
Sbjct: 625 YYVMGFDPNIERFFRHYVLLVLISQMASGLFRLLAALGREMVVADTFGSFAQLILLVLGG 684
Query: 667 FIISRDSIPKWWIWGFWVSPLMYAQNAASVNEFLGHSWDK--KAGNSNFSLGEAILRQRS 724
F+ISR++I KWWIWG+W SPLMYAQNA +VNEFLGHSW+K SN +LG +L+ R
Sbjct: 685 FLISRENIKKWWIWGYWSSPLMYAQNAIAVNEFLGHSWNKVVDPTQSNDTLGVQVLKVRG 744
Query: 725 LFPESYWYWIGVGAMLGYTLLFNALFTFFLSYLNPLGKQQAVVSKKELQERDRRRKGENV 784
+F ++ WYWIGVGA+LGY +LFN LF FL +L+PLGK QAVVS++EL+E+ R GENV
Sbjct: 745 IFVDANWYWIGVGALLGYIMLFNILFILFLEWLDPLGKGQAVVSEEELREKHVNRTGENV 804
Query: 785 -VIELREYLQRSSS--------LNGKYFKQKGMVLPFQPLSMAFGNINYFVDVPVELKQE 835
++ L Q S S + G +++GMVLPF PLS+ F NI Y VD+P E+K +
Sbjct: 805 ELLTLGTDSQNSPSDANAGRGEITGADTRKRGMVLPFTPLSITFDNIRYSVDMPQEMKDK 864
Query: 836 GVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPK 895
GV EDRL LL V+GAFRPGVLTAL+GVSGAGKTTLMDVLAGRKTGG IEGDI ISGYPK
Sbjct: 865 GVTEDRLLLLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDISISGYPK 924
Query: 896 RQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTS 955
+QETFARI+GYCEQNDIHSP +TV ESLL+SAWLRLPSE++ E ++ FVEEVMELVELTS
Sbjct: 925 KQETFARIAGYCEQNDIHSPHVTVYESLLYSAWLRLPSEVDSEARKMFVEEVMELVELTS 984
Query: 956 LSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIV 1015
L GAL+GLPG+NGLSTEQRKRLTIAVELVANPSI+FMDEPTSGLDARAAAIVMRTVRN V
Sbjct: 985 LRGALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1044
Query: 1016 NTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGSKSCELIKYFE 1066
+TGRT+VCTIHQPSIDIFE+FDEL MKRGGE IY GPLG SC LI YFE
Sbjct: 1045 DTGRTVVCTIHQPSIDIFEAFDELFLMKRGGEEIYVGPLGHNSCHLINYFE 1095
|
May be a general defense protein. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|Q8GU89|PDR4_ORYSJ Pleiotropic drug resistance protein 4 OS=Oryza sativa subsp. japonica GN=PDR4 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 1401 bits (3626), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 675/1086 (62%), Positives = 839/1086 (77%), Gaps = 21/1086 (1%)
Query: 1 MWNSAENVFSRTSS-FRDEVEDEEALRWAALERLPTYARARRGIFK------NVVGDVKE 53
MW S +VFSR+SS F+DE +DEEALRWAALERLPTY R RRGI G+ E
Sbjct: 17 MWRSGGDVFSRSSSRFQDEDDDEEALRWAALERLPTYDRVRRGILAVSSEDGGAGGEKVE 76
Query: 54 VDVSELAVQEQRLVLDRLVNAVEDDPERFFDRMRKRCEAVDLELPKIEVRFQNLTVESFV 113
VDV L +E R +++RLV A +DD ERF ++R+R + V ++ P IEVRF+NL VE+ V
Sbjct: 77 VDVGRLGARESRALIERLVRAADDDHERFLLKLRERMDRVGIDYPTIEVRFENLEVEADV 136
Query: 114 HLGSRALPTIPNFIFNMTEALLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSG 173
H+G+R LPT+ N + N EA+ L I + +T+L D+SGII+P R+TLLLGPP SG
Sbjct: 137 HVGNRGLPTLLNSVTNTVEAIGNALHILPNKKQPMTVLHDVSGIIKPRRMTLLLGPPGSG 196
Query: 174 KTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFA 233
KTTLLLALAG+L L+VSGK+TYNGHG EFVP RT+AY+SQ D + EMTVRETL F+
Sbjct: 197 KTTLLLALAGKLDKDLKVSGKVTYNGHGMHEFVPERTAAYISQHDLHIGEMTVRETLAFS 256
Query: 234 GQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDT 293
+CQGVG++Y+M+TELARREK A IKPD D+DI+MK+ A+GGQ++S+V +YI+KILGLD
Sbjct: 257 ARCQGVGTRYEMLTELARREKAANIKPDHDIDIYMKASAMGGQESSVVTDYILKILGLDI 316
Query: 294 CADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHST 353
CADT+VG+EML+GISGGQ+KR+TTGE+LVGPAR LFMDEIS GLDSSTTYQI+ L+ +
Sbjct: 317 CADTVVGNEMLRGISGGQRKRVTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQTI 376
Query: 354 RALDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVA 413
L GT VISLLQPAPE Y LFDD+ILLS+GQ+VYQGPR VL+FF MGF CP RK VA
Sbjct: 377 HILGGTAVISLLQPAPETYNLFDDIILLSDGQVVYQGPREHVLEFFEFMGFRCPARKGVA 436
Query: 414 DFLQEVTSKKDQEQYWSNPYLPYRYISPGKFAEAFHSYHTGKNLSEELAVPFDRRFNHPA 473
DFLQEVTS+KDQ QYW PYR++ +FA+AF S+H G+++ EL+ PFDR +HPA
Sbjct: 437 DFLQEVTSRKDQGQYWCRRDRPYRFVPVKQFADAFRSFHVGRSIQNELSEPFDRTRSHPA 496
Query: 474 ALSTSKYGEKRSELLKTSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHKT 533
AL+TSKYG R ELLK + + +LLLMKRN+F+Y+FK + L ++ALI MT FFRT+M H
Sbjct: 497 ALATSKYGVSRKELLKATIDRELLLMKRNAFMYIFKAVNLTLMALIVMTTFFRTSMRHDR 556
Query: 534 IDDGGLYLGALYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIP 593
D G +YLGALYF++ ++FNGF E++M V KLPV +K RDL F+P+W YTIPSW L IP
Sbjct: 557 -DYGMIYLGALYFALDTVMFNGFAELAMTVMKLPVFFKQRDLLFFPAWAYTIPSWILQIP 615
Query: 594 TSLIESGFWVAVTYYVIGYDPNVVRFSRQLLLYFFLHQMSIGLFRVIGSLGRNMIVANTF 653
+ +E G +V +TYYVIG+DP+V RF +Q LL L+QMS LFR I +GR+M+V++TF
Sbjct: 616 ITFLEVGVYVFITYYVIGFDPSVSRFFKQYLLLLALNQMSSALFRFIAGIGRDMVVSHTF 675
Query: 654 GSFAMLVVMALGGFIISRDSIPKWWIWGFWVSPLMYAQNAASVNEFLGHSWDKKAGNSNF 713
G ++L ALGGFI++R + KWWIWG+W+SPL YAQNA S NEFLGHSW + N
Sbjct: 676 GPLSLLAFAALGGFILARPDVKKWWIWGYWISPLSYAQNAISTNEFLGHSWSQILPGENV 735
Query: 714 SLGEAILRQRSLFPESYWYWIGVGAMLGYTLLFNALFTFFLSYLNPLGKQQAVVSKKELQ 773
+LG ++L+ R +F E+ WYWIG+GA+LGYTLLFN L+T LS L+P A +S+ L+
Sbjct: 736 TLGVSVLKSRGIFTEAKWYWIGLGALLGYTLLFNLLYTVALSVLSPFTDSHASMSEDALK 795
Query: 774 ERDRRRKGENV-----------VIELREYLQRSSSLNG--KYFKQKGMVLPFQPLSMAFG 820
E+ GE V +EL ++S +N +KGMVLPF PLS++F
Sbjct: 796 EKHANLTGEVVEGQKDTKSRKQELELSHIADQNSGINSADSSASRKGMVLPFAPLSISFN 855
Query: 821 NINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKT 880
++ Y VD+P +K +G+ EDRL LL V+G+FRPGVLTAL+GVSGAGKTTLMDVLAGRKT
Sbjct: 856 DVRYSVDMPEAMKAQGITEDRLLLLKGVSGSFRPGVLTALMGVSGAGKTTLMDVLAGRKT 915
Query: 881 GGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQ 940
GG IEGDI ISGYPK+QETFARISGYCEQNDIHSP +TV ESL+FSAWLRLPSE++ E +
Sbjct: 916 GGYIEGDIRISGYPKKQETFARISGYCEQNDIHSPHVTVYESLVFSAWLRLPSEVDSEAR 975
Query: 941 RAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLD 1000
+ F+EEVM+LVELTSL GAL+GLPG++GLSTEQRKRLTIAVELVANPSI+FMDEPTSGLD
Sbjct: 976 KMFIEEVMDLVELTSLRGALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1035
Query: 1001 ARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGSKSCE 1060
ARAAAIVMRTVRN VNTGRT+VCTIHQPSIDIFE+FDEL MKRGGE IY GP+G S +
Sbjct: 1036 ARAAAIVMRTVRNTVNTGRTVVCTIHQPSIDIFEAFDELFLMKRGGEEIYVGPVGQNSSK 1095
Query: 1061 LIKYFE 1066
LI+YFE
Sbjct: 1096 LIEYFE 1101
|
May be a general defense protein. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|Q76CU2|PDR1_TOBAC Pleiotropic drug resistance protein 1 OS=Nicotiana tabacum GN=PDR1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 1373 bits (3555), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 649/1064 (60%), Positives = 830/1064 (78%), Gaps = 9/1064 (0%)
Query: 3 NSAENVFSRTSSFRDEVEDEEALRWAALERLPTYARARRGIFKNVVGDVKEVDVSELAVQ 62
N+ +FSR+S RDE +DEEAL+WAALE+LPT+ R R+G+ G EVD+++L Q
Sbjct: 32 NNGVEIFSRSS--RDE-DDEEALKWAALEKLPTFDRLRKGLLFGSQGAAAEVDINDLGFQ 88
Query: 63 EQRLVLDRLVNAVEDDPERFFDRMRKRCEAVDLELPKIEVRFQNLTVESFVHLGSRALPT 122
E++ +L+RLV ++D E+F +++ R + V ++LP IEVR+++L +++ ++GSR+LPT
Sbjct: 89 ERKNLLERLVKVADEDNEKFLLKLKNRIDRVGIDLPTIEVRYEHLNIDADAYVGSRSLPT 148
Query: 123 IPNFIFNMTEALLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALA 182
NF+ N E LL L I + +LTIL D+SGII+P R+TLLLGPPSSGKTTLLLALA
Sbjct: 149 FMNFMTNFVETLLNSLHILSSRKRQLTILKDISGIIKPCRMTLLLGPPSSGKTTLLLALA 208
Query: 183 GRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSK 242
G+L L+V+GK++YNGH EFVP RT+AY+SQ D + EMTVRETL+F+ +CQGVGS+
Sbjct: 209 GKLDPALKVTGKVSYNGHELHEFVPQRTAAYISQHDLHIGEMTVRETLEFSARCQGVGSR 268
Query: 243 YDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDE 302
++M+ EL+RREK A IKPD D+DI+MK+ A GQ+ ++V +Y++KILGLD CADT+VGD+
Sbjct: 269 FEMLAELSRREKAANIKPDADIDIYMKAAATEGQEANVVTDYVLKILGLDICADTMVGDD 328
Query: 303 MLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVI 362
M++GISGGQKKR+TTGE+LVGP++ LFMDEIS GLDSSTTY I+ L+ S + L GT VI
Sbjct: 329 MIRGISGGQKKRVTTGEMLVGPSKALFMDEISTGLDSSTTYSIVNSLRQSVQILKGTAVI 388
Query: 363 SLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVTSK 422
SLLQPAPE Y LFDD+ILLS+G IVYQGPR VL+FF SMGF CP+RK VADFLQEVTSK
Sbjct: 389 SLLQPAPETYNLFDDIILLSDGYIVYQGPRDDVLEFFESMGFKCPQRKGVADFLQEVTSK 448
Query: 423 KDQEQYWSNPYLPYRYISPGKFAEAFHSYHTGKNLSEELAVPFDRRFNHPAALSTSKYGE 482
KDQ+QYWS PYR+I+ +FAEA+ S+H G+ L +ELA PFD+ HPAAL+ KYG
Sbjct: 449 KDQQQYWSKRNEPYRFITSKEFAEAYQSFHVGRKLGDELATPFDKTKCHPAALTNEKYGI 508
Query: 483 KRSELLKTSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHKTIDDGGLYLG 542
+ ELLK +LLLMKRNSF+Y+FKF QL I+ALITMT+FFRT M T DDGG+Y G
Sbjct: 509 GKKELLKVCTERELLLMKRNSFVYMFKFSQLTIMALITMTLFFRTEMPRDTTDDGGIYAG 568
Query: 543 ALYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIPTSLIESGFW 602
AL+F +++I+FNG +E++M + KLPV YK RDL F+PSW Y IPSW L IP +L+E G W
Sbjct: 569 ALFFVVIMIMFNGMSELAMTIFKLPVFYKQRDLLFFPSWAYAIPSWILKIPVTLVEVGLW 628
Query: 603 VAVTYYVIGYDPNVVRFSRQLLLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSFAMLVVM 662
V +TYYVIG+DPN+ RF +Q LL ++QM+ G+FR IG++GR M VA+TFGSFA+L+
Sbjct: 629 VILTYYVIGFDPNITRFLKQFLLLIVVNQMASGMFRFIGAVGRTMGVASTFGSFALLLQF 688
Query: 663 ALGGFIISRDSIPKWWIWGFWVSPLMYAQNAASVNEFLGHSWDKKAGNSNFSLGEAILRQ 722
ALGGF++SRD + WWIWG+W+SP+MY+ N+ VNEF G W+ N +LG +++
Sbjct: 689 ALGGFVLSRDDVKSWWIWGYWISPMMYSVNSILVNEFDGKKWNHIVPGGNETLGSTVVKS 748
Query: 723 RSLFPESYWYWIGVGAMLGYTLLFNALFTFFLSYLNPLGKQQAVVSKKELQERDRRRKGE 782
R FPE+YWYWIGVGA++G+T++FN ++ L+YLNP K QAV+ ++ + GE
Sbjct: 749 RGFFPEAYWYWIGVGALVGFTVVFNFCYSLALAYLNPFDKPQAVLP----EDGENAENGE 804
Query: 783 NVVIELREYLQRSSSLNGKYFKQKGMVLPFQPLSMAFGNINYFVDVPVELKQEGVLEDRL 842
V S++ +KGMVLPF+P S+ F ++ Y VD+P E+K++G EDRL
Sbjct: 805 --VSSQITSTDGGDSISESQNNKKGMVLPFEPHSITFDDVVYSVDMPQEMKEQGAGEDRL 862
Query: 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFAR 902
LL V+GAFRPGVLTAL+GVSGAGKTTLMDVLAGRKTGG I+G+I ISGYPK+QETFAR
Sbjct: 863 VLLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIDGEIKISGYPKKQETFAR 922
Query: 903 ISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIG 962
ISGYCEQNDIHSP +TV ESL++SAWLRLP +++ +T++ FV+EVMELVEL L AL+G
Sbjct: 923 ISGYCEQNDIHSPYVTVYESLVYSAWLRLPQDVDEKTRKMFVDEVMELVELGPLRSALVG 982
Query: 963 LPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIV 1022
LPG+NGLSTEQRKRLTIAVELVANPSI+FMDEPTSGLDARAAAIVMRTVRN V+TGRT+V
Sbjct: 983 LPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1042
Query: 1023 CTIHQPSIDIFESFDELLFMKRGGELIYAGPLGSKSCELIKYFE 1066
CTIHQPSIDIFE+FDEL MKRGG+ IY GPLG SC LIKYFE
Sbjct: 1043 CTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHSCHLIKYFE 1086
|
May be a general defense protein. Nicotiana tabacum (taxid: 4097) |
| >sp|Q8GU92|PDR2_ORYSJ Probable pleiotropic drug resistance protein 2 OS=Oryza sativa subsp. japonica GN=PDR2 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 1365 bits (3533), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 668/1089 (61%), Positives = 836/1089 (76%), Gaps = 23/1089 (2%)
Query: 1 MWNSAEN-VFSRT---SSFRDEVEDEEALRWAALERLPTYARARRGIFKNVVGDV----- 51
MW SA+N VFSR+ SS D +DEEALRWAALE+LPTY R RR + V
Sbjct: 28 MWWSADNGVFSRSRASSSGEDGEDDEEALRWAALEKLPTYDRVRRAVLPVVEEGGGGGEA 87
Query: 52 --KEVDVSELAVQEQRLVLDRLVNAVEDDPERFFDRMRKRCEAVDLELPKIEVRFQNLTV 109
K VDV L QE+R +L+RLV EDD ERF ++++R + V +++P IEVRF++L
Sbjct: 88 GKKVVDVLSLGPQERRALLERLVRVAEDDNERFLLKLKERIDRVGIDIPTIEVRFEHLEA 147
Query: 110 ESFVHLGSRALPTIPNFIFNMTEALLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGP 169
E+ V +G+ LPT+ N + N E L I + + IL D+SGI++P R+TLLLGP
Sbjct: 148 EAEVRVGNSGLPTVLNSMTNKLEGAANALGILPNKKQTMPILHDVSGIVKPRRMTLLLGP 207
Query: 170 PSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRET 229
P SGKTTLLLALAGRLG ++ SG++TYNGH ++FVP RT+AY+SQ D + EMTVRET
Sbjct: 208 PGSGKTTLLLALAGRLGKDIKFSGQVTYNGHQMEDFVPQRTAAYISQHDLHIGEMTVRET 267
Query: 230 LDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKIL 289
L F+ +CQGVGS++DM+TEL+RREK A IKPD D+D FMK+ A+ GQ+T+L+ +YI+KIL
Sbjct: 268 LSFSARCQGVGSRFDMLTELSRREKAANIKPDADIDAFMKASAMEGQETNLITDYILKIL 327
Query: 290 GLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYL 349
GLD CADT+VGD+M++GISGGQ+KR+TTGE+LVGPA LFMDEIS GLDSSTT+QI+K L
Sbjct: 328 GLDICADTMVGDDMVRGISGGQRKRVTTGEMLVGPANALFMDEISTGLDSSTTFQIVKSL 387
Query: 350 KHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKR 409
+ + L GT VISLLQPAPE Y+LFDD+ILLS+GQIVYQGPR VL+FF MGF CP+R
Sbjct: 388 RQAIHILGGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPREGVLEFFELMGFKCPER 447
Query: 410 KNVADFLQEVTSKKDQEQYWSNPYLPYRYISPGKFAEAFHSYHTGKNLSEELAVPFDRRF 469
K VADFLQEVTS+KDQ+QYW PYRY+ FA AF S+HTGK+++ ELA PFD+
Sbjct: 448 KGVADFLQEVTSRKDQKQYWMQHDKPYRYVPVKDFASAFQSFHTGKSIANELATPFDKSK 507
Query: 470 NHPAALSTSKYGEKRSELLKTSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTM 529
NHPAAL+TS+YG ELLK + + + LLMKRNSF+Y+F+ QL++V+ I MTVFFRT M
Sbjct: 508 NHPAALTTSRYGVSAMELLKANIDREFLLMKRNSFVYIFRACQLMVVSAIAMTVFFRTKM 567
Query: 530 HHKTIDDGGLYLGALYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWA 589
H ++ DG +++GAL+FS+++I+FNG +E+ + + KLPV +K RDL F+P+W YTIPSW
Sbjct: 568 HRDSVTDGVIFMGALFFSVMMIMFNGLSELPLTIFKLPVFFKQRDLLFFPAWTYTIPSWI 627
Query: 590 LSIPTSLIESGFWVAVTYYVIGYDPNVVRFSRQLLLYFFLHQMSIGLFRVIGSLGRNMIV 649
L IP S IE G +V ++YYVIG+DP+ RF +Q LL ++QM+ LFR +G RNMIV
Sbjct: 628 LKIPMSFIEVGGFVFMSYYVIGFDPSAGRFFKQYLLMLAINQMAAALFRFVGGAARNMIV 687
Query: 650 ANTFGSFAMLVVMALGGFIISRDSIPKWWIWGFWVSPLMYAQNAASVNEFLGHSWDKKAG 709
AN FGSF +L+ M LGGFI+ R+ + KWWIWG+W+SP+MYAQNA SVNEFLGHSWDK
Sbjct: 688 ANVFGSFMLLIFMVLGGFILVREKVKKWWIWGYWISPMMYAQNAISVNEFLGHSWDKVLN 747
Query: 710 N--SNFSLGEAILRQRSLFPESYWYWIGVGAMLGYTLLFNALFTFFLSYLNPLGKQQAVV 767
N SN +LG LR R +FPE+ WYWIG GA+LG+ +LFN LFT L+YL P GK Q V
Sbjct: 748 NSLSNETLGVQALRSRGVFPEAKWYWIGFGALLGFIMLFNGLFTLALTYLKPYGKSQPSV 807
Query: 768 SKKELQERDRRRKGENVVIE---------LREYLQRSSSL-NGKYFKQKGMVLPFQPLSM 817
S++EL+E+ G + ++ + + + SS + + Q+GMVLPF PLS+
Sbjct: 808 SEEELKEKQANINGNVLDVDTMASSTNLAIVDNTETSSEIADNSQPTQRGMVLPFAPLSL 867
Query: 818 AFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG 877
F NI Y VD+P E+K G++EDRL+LL V+G+FRPGVLTAL+GVSGAGKTTLMDVLAG
Sbjct: 868 TFDNIKYSVDMPQEMKAHGIVEDRLELLKGVSGSFRPGVLTALMGVSGAGKTTLMDVLAG 927
Query: 878 RKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIEL 937
RKTGG IEG+I ISGYPK+QETFAR+SGYCEQNDIHSP +TV ESLLFSAWLRLP +++
Sbjct: 928 RKTGGYIEGNITISGYPKKQETFARVSGYCEQNDIHSPQVTVSESLLFSAWLRLPKDVDS 987
Query: 938 ETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTS 997
T++ F+EEVMELVEL L AL+GLPG+NGLSTEQRKRLTIAVELVANPSI+FMDEPTS
Sbjct: 988 NTRKMFIEEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1047
Query: 998 GLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGSK 1057
GLDARAAAIVMRTVRN V+TGRT+VCTIHQPSIDIFE+FDEL MKRGGE IY GPLG +
Sbjct: 1048 GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGEEIYVGPLGHQ 1107
Query: 1058 SCELIKYFE 1066
S ELIKYFE
Sbjct: 1108 SSELIKYFE 1116
|
May be a general defense protein. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|O24367|TUR2_SPIPO Pleiotropic drug resistance protein TUR2 OS=Spirodela polyrrhiza GN=TUR2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 1358 bits (3515), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 653/1067 (61%), Positives = 828/1067 (77%), Gaps = 8/1067 (0%)
Query: 4 SAENVFSRTSSFRDEVEDEEALRWAALERLPTYARARRGIFKNVVGDVKEVDVSELAVQE 63
S +VF R+S E +DEEAL+WAALE+LPTY R R+GI G+++EVD+ L QE
Sbjct: 30 STSDVFGRSSR---EEDDEEALKWAALEKLPTYDRLRKGIMTGDGGEIQEVDIQGLGFQE 86
Query: 64 QRLVLDRLVNAVEDDPERFFDRMRKRCEAVDLELPKIEVRFQNLTVESFVHLGSRALPTI 123
++ +L++LV E+D ERF ++R R E V ++ P IEVRF++L + + +G+R +PT+
Sbjct: 87 RKNLLEKLVRNAEEDNERFLLKLRNRMERVGIDNPTIEVRFEHLNINAEAFVGNRGVPTL 146
Query: 124 PNFIFNMTEALLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAG 183
NF N +L L + + ++IL D+SGII+P R+TLLLGPP +GKTTLLLALAG
Sbjct: 147 VNFFVNKAIWILSALHLMPSGKRPISILHDVSGIIKPCRMTLLLGPPGAGKTTLLLALAG 206
Query: 184 RLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKY 243
+L + L+V+G +TYNGHG EFVP RTSAY+SQ D + EMTVRETL F+ +CQGVG++Y
Sbjct: 207 KLDNTLKVTGNVTYNGHGMHEFVPQRTSAYISQHDVHIGEMTVRETLAFSSRCQGVGTRY 266
Query: 244 DMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEM 303
+M+TEL+RREK A IKPD D+D++MK+ A+ GQ+ S+V +YI+KILGLD CADT+VGD M
Sbjct: 267 EMLTELSRREKEANIKPDPDVDVYMKAVAVEGQE-SVVTDYILKILGLDICADTMVGDGM 325
Query: 304 LKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVIS 363
++GISGGQKKR+TTGE+LVGP++ LFMDEIS GLDSSTT+QI+ L+ S L GT +I+
Sbjct: 326 IRGISGGQKKRVTTGEMLVGPSKALFMDEISTGLDSSTTFQIVNSLRQSVHILGGTALIA 385
Query: 364 LLQPAPEAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVTSKK 423
LLQPAPE Y+LFDD++LLS+GQIVYQGPR +VL+FF SMGF CP+RK VADFLQEVTS+K
Sbjct: 386 LLQPAPETYDLFDDILLLSDGQIVYQGPRENVLEFFESMGFKCPERKGVADFLQEVTSRK 445
Query: 424 DQEQYWSNPYLPYRYISPGKFAEAFHSYHTGKNLSEELAVPFDRRFNHPAALSTSKYGEK 483
DQ+QYW PYR++ +F+EAF S+H G L EEL+ PFDR NHPAAL+TSKYG
Sbjct: 446 DQQQYWVRENEPYRFVPVNEFSEAFKSFHVGAKLHEELSTPFDRSRNHPAALTTSKYGIS 505
Query: 484 RSELLKTSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHKTIDDGGLYLGA 543
+ ELLK + + LLMKRNSF+Y+FK +QL+++ALI MTVFFRT + ++D ++ GA
Sbjct: 506 KMELLKACIDREWLLMKRNSFVYIFKVVQLIVLALIAMTVFFRTKLPRNGLEDATIFFGA 565
Query: 544 LYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIPTSLIESGFWV 603
++ +V LFNGF E++M +AKLPV YK RDL FYP W Y +P+W L IP S +E G W+
Sbjct: 566 MFLGLVTHLFNGFAELAMSIAKLPVFYKQRDLLFYPPWAYALPTWILKIPISFVECGVWI 625
Query: 604 AVTYYVIGYDPNVVRFSRQLLLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSFAMLVVMA 663
A+TYYVIG+DPNVVR R LL + Q++ GLFR++ ++GR+M+VA+TFG+FA LV++
Sbjct: 626 AMTYYVIGFDPNVVRMFRHYLLLVLISQVASGLFRLLAAVGRDMVVADTFGAFAQLVLLV 685
Query: 664 LGGFIISRDSIPKWWIWGFWVSPLMYAQNAASVNEFLGHSWDKKAGNSNFSLGEAILRQR 723
LGGFII+R+ I K+WIWG+W SPLMYAQNA +VNEFLGHSW+K + +LGE LR R
Sbjct: 686 LGGFIIAREKIKKFWIWGYWSSPLMYAQNAIAVNEFLGHSWNKLVDATGQTLGERFLRNR 745
Query: 724 SLFPESYWYWIGVGAMLGYTLLFNALFTFFLSYLNPLGKQQAVVSKKELQERDRRRKGEN 783
+F + WYWIGVGA++GY +LFN LF FL +L+PLGK Q VS++ LQE++ R G N
Sbjct: 746 GIFVDKNWYWIGVGALIGYMVLFNFLFILFLEWLDPLGKGQTTVSEEALQEKEANRTGAN 805
Query: 784 VVIELREYLQRSS----SLNGKYFKQKGMVLPFQPLSMAFGNINYFVDVPVELKQEGVLE 839
V + R S + ++KGMVLPF PLS+ F N+ Y VD+P E+K GV E
Sbjct: 806 VELATRGSAATSDGGSVEIRKDGNRKKGMVLPFTPLSITFDNVKYSVDMPQEMKDRGVTE 865
Query: 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQET 899
D+L LL V+GAFRPGVLTAL+GVSG GKTTLMDVLAGRKTGG IEGDI ISGYPK QET
Sbjct: 866 DKLLLLKGVSGAFRPGVLTALMGVSGRGKTTLMDVLAGRKTGGYIEGDIRISGYPKNQET 925
Query: 900 FARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGA 959
FARISGYCEQNDIHSP +TV ESLL+SAWLRLP+E++ + ++ FV+EVM+LVEL SL G+
Sbjct: 926 FARISGYCEQNDIHSPHVTVYESLLYSAWLRLPAEVDEKQRKMFVDEVMDLVELNSLRGS 985
Query: 960 LIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGR 1019
L+GLPG+ GLSTEQRKRLTIAVELVANPSI+FMDEPTSGLDARAAAIVMR VRN V+TGR
Sbjct: 986 LVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGR 1045
Query: 1020 TIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGSKSCELIKYFE 1066
T+VCTIHQPSIDIFE+FDEL MKRGGE IY GPLG +S LIKYFE
Sbjct: 1046 TVVCTIHQPSIDIFEAFDELFLMKRGGEEIYVGPLGRQSSHLIKYFE 1092
|
May be a general defense protein (By similarity). Seems involved in turion (dormant buds) formation. Confers resistance to the diterpenoid antifungal agent sclareol. Spirodela polyrrhiza (taxid: 29656) |
| >sp|Q0JLC5|PDR3_ORYSJ Pleiotropic drug resistance protein 3 OS=Oryza sativa subsp. japonica GN=PDR3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 1352 bits (3500), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 667/1087 (61%), Positives = 833/1087 (76%), Gaps = 24/1087 (2%)
Query: 1 MWNSAENVFSRTSSFRDEVEDEEALRWAALERLPTYARARRGIF-------KNVVGDVKE 53
MW ++VFSR+S R+E +DEEALRWAALE+LPTY R RR I G
Sbjct: 26 MWRRGDDVFSRSS--REE-DDEEALRWAALEKLPTYDRVRRAILPLGGDDGAGDGGGKGV 82
Query: 54 VDVSELAVQEQRLVLDRLVNAVEDDPERFFDRMRKRCEAVDLELPKIEVRFQNLTVESFV 113
VDV L +E+R +L+RLV ++D E+F +++ R + V +++P IEVRF++L E+ V
Sbjct: 83 VDVHGLGPRERRALLERLVRVADEDNEKFLLKLKDRVDRVGIDMPTIEVRFEHLEAEAEV 142
Query: 114 HLGSRALPTIPNFIFNMTEALLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSG 173
+G+ LPT+ N I N E L I + + +L D+SGII+P R+TLLLGPP SG
Sbjct: 143 RVGNSGLPTVLNSITNTLEEAGNALGILPNRKQTMPVLHDVSGIIKPRRMTLLLGPPGSG 202
Query: 174 KTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFA 233
KTTLLLALAGRLG L+ SGK+TYNGHG +EFVP RT+AY+SQ D + EMTVRETL F+
Sbjct: 203 KTTLLLALAGRLGKDLKASGKVTYNGHGMEEFVPERTAAYISQHDLHIGEMTVRETLAFS 262
Query: 234 GQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDT 293
+CQGVGS++DM+TEL+RREK A IKPD D+D FMK+ A+GGQ+ ++ +YI+KILGL+
Sbjct: 263 ARCQGVGSRFDMLTELSRREKAANIKPDADIDAFMKAAAMGGQEANVNTDYILKILGLEI 322
Query: 294 CADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHST 353
CADT+VGDEML+GISGGQ+KR+TTGE+LVGPAR LFMDEIS GLDSSTT+QI+ L+ +
Sbjct: 323 CADTMVGDEMLRGISGGQRKRVTTGEMLVGPARALFMDEISTGLDSSTTFQIVNSLRQTV 382
Query: 354 RALDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVA 413
L GT VISLLQPAPE Y LFDD+ILLS+GQIVYQGPR VL+FF SMGF CP RK VA
Sbjct: 383 HILGGTAVISLLQPAPETYNLFDDIILLSDGQIVYQGPREDVLEFFESMGFKCPDRKGVA 442
Query: 414 DFLQEVTSKKDQEQYWSNPYLPYRYISPGKFAEAFHSYHTGKNLSEELAVPFDRRFNHPA 473
DFLQEVTSKKDQ QYW+ PYR+++ +F AF S+HTG+ ++ ELAVPFD+ +HPA
Sbjct: 443 DFLQEVTSKKDQRQYWARHDKPYRFVTVKEFVSAFQSFHTGRAIANELAVPFDKSKSHPA 502
Query: 474 ALSTSKYGEKRSELLKTSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHKT 533
AL+T++YG ELLK + + ++LLMKRNSF+Y+F+ QL++V+LI MT+FFRT M +
Sbjct: 503 ALATTRYGAPGKELLKANIDREILLMKRNSFVYMFRTFQLMVVSLIAMTLFFRTKMKRDS 562
Query: 534 IDDGGLYLGALYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIP 593
+ GG+Y+GAL+F +++I+FNGF+E+++ V KLPV +K RDL FYP+W YTIPSW L IP
Sbjct: 563 VTSGGIYMGALFFGVLMIMFNGFSELALTVFKLPVFFKQRDLLFYPAWSYTIPSWILKIP 622
Query: 594 TSLIESGFWVAVTYYVIGYDPNVVRFSRQLLLYFFLHQMSIGLFRVIGSLGRNMIVANTF 653
+ IE G +V +TYYVIG+D NV F +Q LL ++QM+ LFR IG RNMIVAN F
Sbjct: 623 ITFIEVGGYVFLTYYVIGFDSNVGSFFKQYLLMLAINQMAGSLFRFIGGAARNMIVANVF 682
Query: 654 GSFAMLVVMALGGFIISRDSIPKWWIWGFWVSPLMYAQNAASVNEFLGHSWDK--KAGNS 711
SF +L+ M LGGFI++R+ + KWWIWG+W+SP+MYAQNA SVNE +GHSW+K + S
Sbjct: 683 ASFMLLIFMVLGGFILAREQVKKWWIWGYWISPMMYAQNAISVNELMGHSWNKIVNSSAS 742
Query: 712 NFSLGEAILRQRSLFPESYWYWIGVGAMLGYTLLFNALFTFFLSYLNPLGKQQAVVSKKE 771
N +LG +L+ R +FPE+ WYWIG GAM+G+T+LFNALFT L+YL P G + VS++E
Sbjct: 743 NETLGVQVLKSRGVFPEARWYWIGFGAMIGFTILFNALFTLALTYLRPYGNSRQSVSEEE 802
Query: 772 LQERDRRRKGENV-VIELREYLQRSSSLNG-----------KYFKQKGMVLPFQPLSMAF 819
L+E+ GE V + L R NG Q+GMVLPF PLS++F
Sbjct: 803 LKEKRANLNGEIVGDVHLSSGSTRRPMGNGTENDSTIVDDDTEVTQRGMVLPFTPLSLSF 862
Query: 820 GNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRK 879
N+ Y VD+P E+K +GV +DRL+LL V+G+FRPGVLTAL+GVSGAGKTTLMDVLAGRK
Sbjct: 863 DNVRYSVDMPQEMKAQGVADDRLELLKGVSGSFRPGVLTALMGVSGAGKTTLMDVLAGRK 922
Query: 880 TGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELET 939
TGG IEG I ISGYPK+QETFAR+SGYCEQNDIHSP +TV ESLLFSAWLRLP +++ T
Sbjct: 923 TGGYIEGSINISGYPKKQETFARVSGYCEQNDIHSPQVTVYESLLFSAWLRLPEDVDSNT 982
Query: 940 QRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGL 999
++ F+EEVMELVEL SL AL+GLPG+NGLSTEQRKRLTIAVELVANPSI+FMDEPTSGL
Sbjct: 983 RKMFIEEVMELVELKSLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1042
Query: 1000 DARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGSKSC 1059
DARAAAIVMRTVRN VNTGRT+VCTIHQPSIDIFE+FDEL MKRGGE IYAGPLG S
Sbjct: 1043 DARAAAIVMRTVRNTVNTGRTVVCTIHQPSIDIFEAFDELFLMKRGGEEIYAGPLGHHSS 1102
Query: 1060 ELIKYFE 1066
ELIKYFE
Sbjct: 1103 ELIKYFE 1109
|
May be a general defense protein. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|A2WSH0|PDR3_ORYSI Pleiotropic drug resistance protein 3 OS=Oryza sativa subsp. indica GN=PDR3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 1350 bits (3494), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 666/1087 (61%), Positives = 832/1087 (76%), Gaps = 24/1087 (2%)
Query: 1 MWNSAENVFSRTSSFRDEVEDEEALRWAALERLPTYARARRGIF-------KNVVGDVKE 53
MW ++VFSR+S R+E +DEEALRWAALE+LPTY R RR I G
Sbjct: 26 MWRRGDDVFSRSS--REE-DDEEALRWAALEKLPTYDRVRRAILPLGGDDGAGDGGGKGV 82
Query: 54 VDVSELAVQEQRLVLDRLVNAVEDDPERFFDRMRKRCEAVDLELPKIEVRFQNLTVESFV 113
VDV L +E+R +L+RLV ++D E+F +++ R + V +++P IEVRF++L E+ V
Sbjct: 83 VDVHGLGPRERRALLERLVRVADEDNEKFLLKLKDRVDRVGIDMPTIEVRFEHLEAEAEV 142
Query: 114 HLGSRALPTIPNFIFNMTEALLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSG 173
+G+ LPT+ N I N E L I + + +L D+SGII+P R+TLLLGPP SG
Sbjct: 143 RVGNSGLPTVLNSITNTLEEAGNALGILPNRKQTMPVLHDVSGIIKPRRMTLLLGPPGSG 202
Query: 174 KTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFA 233
KTTLLLALAGRLG L+ SGK+TYNGHG +EFVP RT+AY+SQ D + EMTVRETL F+
Sbjct: 203 KTTLLLALAGRLGKDLKASGKVTYNGHGMEEFVPERTAAYISQHDLHIGEMTVRETLAFS 262
Query: 234 GQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDT 293
+CQGVGS++DM+TEL+RREK A IKPD D+D FMK+ A+GGQ+ ++ +YI+KILGL+
Sbjct: 263 ARCQGVGSRFDMLTELSRREKAANIKPDADIDAFMKAAAMGGQEANVNTDYILKILGLEI 322
Query: 294 CADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHST 353
CADT+VGDEML+GISGGQ+KR+TTGE+LVGPAR LFMDEIS GLDSSTT+QI+ L+ +
Sbjct: 323 CADTMVGDEMLRGISGGQRKRVTTGEMLVGPARALFMDEISTGLDSSTTFQIVNSLRQTV 382
Query: 354 RALDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVA 413
L GT VISLLQPAPE Y LFDD+ILLS+GQIVYQGPR VL+FF S GF CP RK VA
Sbjct: 383 HILGGTAVISLLQPAPETYNLFDDIILLSDGQIVYQGPREDVLEFFESTGFKCPDRKGVA 442
Query: 414 DFLQEVTSKKDQEQYWSNPYLPYRYISPGKFAEAFHSYHTGKNLSEELAVPFDRRFNHPA 473
DFLQEVTSKKDQ QYW+ PYR+++ +F AF S+HTG+ ++ ELAVPFD+ +HPA
Sbjct: 443 DFLQEVTSKKDQRQYWARHDKPYRFVTVKEFVSAFQSFHTGRAIANELAVPFDKSKSHPA 502
Query: 474 ALSTSKYGEKRSELLKTSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHKT 533
AL+T++YG ELLK + + ++LLMKRNSF+Y+F+ QL++V+LI MT+FFRT M +
Sbjct: 503 ALATTRYGAPGKELLKANIDREILLMKRNSFVYMFRTFQLMVVSLIAMTLFFRTKMKRDS 562
Query: 534 IDDGGLYLGALYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIP 593
+ GG+Y+GAL+F +++I+FNGF+E+++ V KLPV +K RDL FYP+W YTIPSW L IP
Sbjct: 563 VTSGGIYMGALFFGVLMIMFNGFSELALTVFKLPVFFKQRDLLFYPAWSYTIPSWILKIP 622
Query: 594 TSLIESGFWVAVTYYVIGYDPNVVRFSRQLLLYFFLHQMSIGLFRVIGSLGRNMIVANTF 653
+ IE G +V +TYYVIG+D NV F +Q LL ++QM+ LFR IG RNMIVAN F
Sbjct: 623 ITFIEVGGYVFLTYYVIGFDSNVGSFFKQYLLMLAINQMAGSLFRFIGGAARNMIVANVF 682
Query: 654 GSFAMLVVMALGGFIISRDSIPKWWIWGFWVSPLMYAQNAASVNEFLGHSWDK--KAGNS 711
SF +L+ M LGGFI++R+ + KWWIWG+W+SP+MYAQNA SVNE +GHSW+K + S
Sbjct: 683 ASFMLLIFMVLGGFILAREQVKKWWIWGYWISPMMYAQNAISVNELMGHSWNKIVNSSAS 742
Query: 712 NFSLGEAILRQRSLFPESYWYWIGVGAMLGYTLLFNALFTFFLSYLNPLGKQQAVVSKKE 771
N +LG +L+ R +FPE+ WYWIG GAM+G+T+LFNALFT L+YL P G + VS++E
Sbjct: 743 NETLGVQVLKSRGVFPEARWYWIGFGAMIGFTILFNALFTLALTYLRPYGNSRQSVSEEE 802
Query: 772 LQERDRRRKGENV-VIELREYLQRSSSLNG-----------KYFKQKGMVLPFQPLSMAF 819
L+E+ GE V + L R NG Q+GMVLPF PLS++F
Sbjct: 803 LKEKRANLNGEIVGDVHLSSGSTRRPMGNGTENDSTIVDDDTEVTQRGMVLPFTPLSLSF 862
Query: 820 GNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRK 879
N+ Y VD+P E+K +GV +DRL+LL V+G+FRPGVLTAL+GVSGAGKTTLMDVLAGRK
Sbjct: 863 DNVRYSVDMPQEMKAQGVADDRLELLKGVSGSFRPGVLTALMGVSGAGKTTLMDVLAGRK 922
Query: 880 TGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELET 939
TGG IEG I ISGYPK+QETFAR+SGYCEQNDIHSP +TV ESLLFSAWLRLP +++ T
Sbjct: 923 TGGYIEGSINISGYPKKQETFARVSGYCEQNDIHSPQVTVYESLLFSAWLRLPEDVDSNT 982
Query: 940 QRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGL 999
++ F+EEVMELVEL SL AL+GLPG+NGLSTEQRKRLTIAVELVANPSI+FMDEPTSGL
Sbjct: 983 RKMFIEEVMELVELKSLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1042
Query: 1000 DARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGSKSC 1059
DARAAAIVMRTVRN VNTGRT+VCTIHQPSIDIFE+FDEL MKRGGE IYAGPLG S
Sbjct: 1043 DARAAAIVMRTVRNTVNTGRTVVCTIHQPSIDIFEAFDELFLMKRGGEEIYAGPLGHHSS 1102
Query: 1060 ELIKYFE 1066
ELIKYFE
Sbjct: 1103 ELIKYFE 1109
|
May be a general defense protein. Oryza sativa subsp. indica (taxid: 39946) |
| >sp|Q9M9E1|AB40G_ARATH ABC transporter G family member 40 OS=Arabidopsis thaliana GN=ABCG40 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 1348 bits (3489), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 642/1068 (60%), Positives = 820/1068 (76%), Gaps = 20/1068 (1%)
Query: 3 NSAENVFSRTSSFRDEVEDEEALRWAALERLPTYARARRGIF--KNVVGDVKEVDVSELA 60
+S +FSR+S R+E +DEEALRWAALE+LPT+ R R+GI + G + E+D+ +L
Sbjct: 23 DSGREIFSRSS--REE-DDEEALRWAALEKLPTFDRLRKGILTASHAGGPINEIDIQKLG 79
Query: 61 VQEQRLVLDRLVNAVEDDPERFFDRMRKRCEAVDLELPKIEVRFQNLTVESFVHLGSRAL 120
Q+ + +L+RL+ +D+ E+ +++KR + V ++LP IEVRF +L VE+ VH+G RAL
Sbjct: 80 FQDTKKLLERLIKVGDDEHEKLLWKLKKRIDRVGIDLPTIEVRFDHLKVEAEVHVGGRAL 139
Query: 121 PTIPNFIFNMTEALLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLA 180
PT NFI N + L L + + K TIL+D+SGI++P R+ LLLGPPSSGKTTLLLA
Sbjct: 140 PTFVNFISNFADKFLNTLHLVPNRKKKFTILNDVSGIVKPGRMALLLGPPSSGKTTLLLA 199
Query: 181 LAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVG 240
LAG+L L+ +G++TYNGHG EFVP RT+AY+ Q D + EMTVRET +A + QGVG
Sbjct: 200 LAGKLDQELKQTGRVTYNGHGMNEFVPQRTAAYIGQNDVHIGEMTVRETFAYAARFQGVG 259
Query: 241 SKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVG 300
S+YDM+TELARREK A IKPD D+DIFMK+ + G+KT+++ +YI+KILGL+ CADT+VG
Sbjct: 260 SRYDMLTELARREKEANIKPDPDIDIFMKAMSTAGEKTNVMTDYILKILGLEVCADTMVG 319
Query: 301 DEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTT 360
D+ML+GISGGQKKR+TTGE+LVGP+R LFMDEIS GLDSSTTYQI+ L++ +GT
Sbjct: 320 DDMLRGISGGQKKRVTTGEMLVGPSRALFMDEISTGLDSSTTYQIVNSLRNYVHIFNGTA 379
Query: 361 VISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVT 420
+ISLLQPAPE + LFDD+IL++EG+I+Y+GPR V++FF +MGF CP RK VADFLQEVT
Sbjct: 380 LISLLQPAPETFNLFDDIILIAEGEIIYEGPRDHVVEFFETMGFKCPPRKGVADFLQEVT 439
Query: 421 SKKDQEQYWSNPYLPYRYISPGKFAEAFHSYHTGKNLSEELAVPFDRRFNHPAALSTSKY 480
SKKDQ QYW+ PYR+I +FAEAF S+H G+ + +ELA+PFD+ +HPAAL+T KY
Sbjct: 440 SKKDQMQYWARRDEPYRFIRVREFAEAFQSFHVGRRIGDELALPFDKTKSHPAALTTKKY 499
Query: 481 GEKRSELLKTSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHKTIDDGGLY 540
G EL+KTSF+ + LLMKRNSF+Y FKF QLL++A +TMT+FFRT M KT DG LY
Sbjct: 500 GVGIKELVKTSFSREYLLMKRNSFVYYFKFGQLLVMAFLTMTLFFRTEMQKKTEVDGSLY 559
Query: 541 LGALYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIPTSLIESG 600
GAL+F +++++FNG +E+SM +AKLPV YK RDL FYP+WVY++P W L IP S +E+
Sbjct: 560 TGALFFILMMLMFNGMSELSMTIAKLPVFYKQRDLLFYPAWVYSLPPWLLKIPISFMEAA 619
Query: 601 FWVAVTYYVIGYDPNVVRFSRQLLLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSFAMLV 660
+TYYVIG+DPNV R +Q +L ++QM+ LF+++ +LGRNMIVANTFG+FAMLV
Sbjct: 620 LTTFITYYVIGFDPNVGRLFKQYILLVLMNQMASALFKMVAALGRNMIVANTFGAFAMLV 679
Query: 661 VMALGGFIISRDSIPKWWIWGFWVSPLMYAQNAASVNEFLGHSWDKKAGNSNFSLGEAIL 720
ALGG ++SRD I KWWIWG+W+SP+MY QNA NEF GHSW + NS+ +LG L
Sbjct: 680 FFALGGVVLSRDDIKKWWIWGYWISPIMYGQNAILANEFFGHSWSRAVENSSETLGVTFL 739
Query: 721 RQRSLFPESYWYWIGVGAMLGYTLLFNALFTFFLSYLNPLGKQQAVVSKKELQERD--RR 778
+ R P +YWYWIG GA+LG+ +LFN FT L++LN LGK QAV++++ + +
Sbjct: 740 KSRGFLPHAYWYWIGTGALLGFVVLFNFGFTLALTFLNSLGKPQAVIAEEPASDETELQS 799
Query: 779 RKGENVVIELREYLQRSSSLNGKYFKQKGMVLPFQPLSMAFGNINYFVDVPVELKQEGVL 838
+ E VV + N K++GMVLPF+P S+ F N+ Y VD+P E+ ++G
Sbjct: 800 ARSEGVV---------EAGAN----KKRGMVLPFEPHSITFDNVVYSVDMPQEMIEQGTQ 846
Query: 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE 898
EDRL LL V GAFRPGVLTAL+GVSGAGKTTLMDVLAGRKTGG I+G+I ISGYPK Q+
Sbjct: 847 EDRLVLLKGVNGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIDGNITISGYPKNQQ 906
Query: 899 TFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSG 958
TFARISGYCEQ DIHSP +TV ESL++SAWLRLP E++ ++ F+EEVMELVELT L
Sbjct: 907 TFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPKEVDKNKRKIFIEEVMELVELTPLRQ 966
Query: 959 ALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTG 1018
AL+GLPG +GLSTEQRKRLTIAVELVANPSI+FMDEPTSGLDARAAAIVMRTVRN V+TG
Sbjct: 967 ALVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1026
Query: 1019 RTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGSKSCELIKYFE 1066
RT+VCTIHQPSIDIFE+FDEL +KRGGE IY GPLG +S LI YFE
Sbjct: 1027 RTVVCTIHQPSIDIFEAFDELFLLKRGGEEIYVGPLGHESTHLINYFE 1074
|
May be a general defense protein (By similarity). Functions as a pump to exclude Pb(2+) ions and/or Pb(2+)-containing toxic compounds from the cytoplasm. Contributes to Pb(2+) ions resistance. Confers some resistance to the terpene sclareol. Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1085 | ||||||
| 224143447 | 1420 | predicted protein [Populus trichocarpa] | 0.982 | 0.750 | 0.865 | 0.0 | |
| 255549008 | 1235 | ATP-binding cassette transporter, putati | 0.964 | 0.847 | 0.856 | 0.0 | |
| 280967727 | 1427 | putative ABC transporter [Malus x domest | 0.982 | 0.747 | 0.829 | 0.0 | |
| 449443129 | 1420 | PREDICTED: ABC transporter G family memb | 0.982 | 0.750 | 0.826 | 0.0 | |
| 449523499 | 1420 | PREDICTED: LOW QUALITY PROTEIN: ABC tran | 0.982 | 0.750 | 0.825 | 0.0 | |
| 356511619 | 1418 | PREDICTED: ABC transporter G family memb | 0.981 | 0.751 | 0.835 | 0.0 | |
| 356563075 | 1418 | PREDICTED: ABC transporter G family memb | 0.981 | 0.751 | 0.833 | 0.0 | |
| 225445364 | 1421 | PREDICTED: ABC transporter G family memb | 0.982 | 0.750 | 0.836 | 0.0 | |
| 356511621 | 1426 | PREDICTED: ABC transporter G family memb | 0.981 | 0.746 | 0.826 | 0.0 | |
| 356563077 | 1426 | PREDICTED: ABC transporter G family memb | 0.981 | 0.746 | 0.825 | 0.0 |
| >gi|224143447|ref|XP_002324959.1| predicted protein [Populus trichocarpa] gi|222866393|gb|EEF03524.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1882 bits (4874), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 923/1067 (86%), Positives = 998/1067 (93%), Gaps = 1/1067 (0%)
Query: 1 MWNSAENVFSRTSSFRDEVEDEEALRWAALERLPTYARARRGIFKNVVGDVKEVDVSELA 60
MWNSAEN F+RT+SFR+ EDEEALRWAALERLPTYAR RRGIFKNVVGD KE+D+SEL
Sbjct: 1 MWNSAENAFTRTASFREGGEDEEALRWAALERLPTYARVRRGIFKNVVGDHKEMDLSELG 60
Query: 61 VQEQRLVLDRLVNAVEDDPERFFDRMRKRCEAVDLELPKIEVRFQNLTVESFVHLGSRAL 120
QEQ+LVL+RLV++V++DPERFFDRMRKR +AV LE PKIEVR QN+TVESFVH+GSRAL
Sbjct: 61 AQEQKLVLERLVSSVDEDPERFFDRMRKRLDAVRLEFPKIEVRVQNVTVESFVHVGSRAL 120
Query: 121 PTIPNFIFNMTEALLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLA 180
PTIPNF+FNMTEALLRQLRIYRGNRSKLTILDD+SGIIRPSRLTLLLGPPSSGKTTLLLA
Sbjct: 121 PTIPNFVFNMTEALLRQLRIYRGNRSKLTILDDVSGIIRPSRLTLLLGPPSSGKTTLLLA 180
Query: 181 LAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVG 240
LAGRLG+ LQ+SGKITYNGH EFV PRTSAYVSQ DW VAEMTV+ETL+FAG CQGVG
Sbjct: 181 LAGRLGNDLQMSGKITYNGHSLNEFVAPRTSAYVSQHDWHVAEMTVKETLEFAGCCQGVG 240
Query: 241 SKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVG 300
SKYDM+ ELARREK AGIKPDEDLDIFMKS ALGGQ+T+LVVEYIMKILGLD CADTLVG
Sbjct: 241 SKYDMLLELARREKFAGIKPDEDLDIFMKSLALGGQETNLVVEYIMKILGLDICADTLVG 300
Query: 301 DEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTT 360
DEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYL+HSTRALDGTT
Sbjct: 301 DEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLRHSTRALDGTT 360
Query: 361 VISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVT 420
VISLLQPAPE YELFDDV+LL EGQIVYQGPR + LDFF+SMGFSCP+RKNVADFLQEV
Sbjct: 361 VISLLQPAPETYELFDDVMLLCEGQIVYQGPRDAALDFFSSMGFSCPERKNVADFLQEVI 420
Query: 421 SKKDQEQYWSNPYLPYRYISPGKFAEAFHSYHTGKNLSEELAVPFDRRFNHPAALSTSKY 480
SKKDQEQYWS P PYRYI P KF EAFHS+ G++LSEELAVPFD+R+NHPAALSTSK+
Sbjct: 421 SKKDQEQYWSVPNRPYRYIPPRKFVEAFHSFLVGRSLSEELAVPFDKRYNHPAALSTSKF 480
Query: 481 GEKRSELLKTSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHKTIDDGGLY 540
G K+SEL + FNWQ LLMKRNSFIYVFKFIQLL+VALITM+VFFR+TMH TI DGGL+
Sbjct: 481 GVKQSELFRICFNWQKLLMKRNSFIYVFKFIQLLLVALITMSVFFRSTMHRDTIYDGGLF 540
Query: 541 LGALYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIPTSLIESG 600
+G++YFSMVIILFNGFTEVSMLVAKLPVLYKHRDL FYPSW YT+PSW LSIP SL+ESG
Sbjct: 541 VGSIYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLRFYPSWAYTLPSWVLSIPISLMESG 600
Query: 601 FWVAVTYYVIGYDPNVVRFSRQLLLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSFAMLV 660
WVAVTYYVIGYDPN+ RF RQ LLYFFLHQMSI LFRVIGSLGR+MIVANTFGSFAMLV
Sbjct: 601 LWVAVTYYVIGYDPNITRFFRQFLLYFFLHQMSIALFRVIGSLGRHMIVANTFGSFAMLV 660
Query: 661 VMALGGFIISRDSIPKWWIWGFWVSPLMYAQNAASVNEFLGHSWDKKAG-NSNFSLGEAI 719
VMALGG+IISRD IP WWIWGFWVSPLMYAQNAASVNEFLGHSWDK+AG N++FSLGEA+
Sbjct: 661 VMALGGYIISRDYIPSWWIWGFWVSPLMYAQNAASVNEFLGHSWDKRAGNNTDFSLGEAL 720
Query: 720 LRQRSLFPESYWYWIGVGAMLGYTLLFNALFTFFLSYLNPLGKQQAVVSKKELQERDRRR 779
LR RSLFPESYWYWIG+ A+LGYT+LFN LFTFFL+YLNPLGK QAVVSK+ELQERD+RR
Sbjct: 721 LRARSLFPESYWYWIGIAALLGYTVLFNLLFTFFLAYLNPLGKHQAVVSKEELQERDKRR 780
Query: 780 KGENVVIELREYLQRSSSLNGKYFKQKGMVLPFQPLSMAFGNINYFVDVPVELKQEGVLE 839
KGENVVIELREYLQ S SLNGKYFK +GMVLPFQPLSM+F NINYFVDVPVELKQ+G++E
Sbjct: 781 KGENVVIELREYLQHSGSLNGKYFKPRGMVLPFQPLSMSFSNINYFVDVPVELKQQGIVE 840
Query: 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQET 899
DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEG+I+ISGYPK+QET
Sbjct: 841 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGNIHISGYPKKQET 900
Query: 900 FARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGA 959
FAR+SGYCEQNDIHSP LTVLESLLFSAWLRLP+ + ++TQ+AFVEEVMELVELT LSGA
Sbjct: 901 FARVSGYCEQNDIHSPCLTVLESLLFSAWLRLPTVVNMDTQQAFVEEVMELVELTPLSGA 960
Query: 960 LIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGR 1019
L+GLPG+NGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGR
Sbjct: 961 LVGLPGVNGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGR 1020
Query: 1020 TIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGSKSCELIKYFE 1066
TIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG +SCELIKYFE
Sbjct: 1021 TIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGPRSCELIKYFE 1067
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255549008|ref|XP_002515560.1| ATP-binding cassette transporter, putative [Ricinus communis] gi|223545504|gb|EEF47009.1| ATP-binding cassette transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1874 bits (4854), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 914/1067 (85%), Positives = 986/1067 (92%), Gaps = 20/1067 (1%)
Query: 1 MWNSAENVFSRTSSFRDEVEDEEALRWAALERLPTYARARRGIFKNVVGDVKEVDVSELA 60
MWNSAEN F+RTSSFR++ EDEEALRWAALERLPTY RARRGIF+NVVGD KE+DVSEL
Sbjct: 1 MWNSAENAFARTSSFREQGEDEEALRWAALERLPTYDRARRGIFRNVVGDHKEIDVSELR 60
Query: 61 VQEQRLVLDRLVNAVEDDPERFFDRMRKRCEAVDLELPKIEVRFQNLTVESFVHLGSRAL 120
QEQ+L+L+RLVN+V+DDPERFFDR+RKR EAVDLE PKIEVRFQNLTV SFVH+GSRAL
Sbjct: 61 AQEQKLLLERLVNSVDDDPERFFDRIRKRFEAVDLEFPKIEVRFQNLTVNSFVHIGSRAL 120
Query: 121 PTIPNFIFNMTEALLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLA 180
PTIPNFIFNMTEALLRQLRIYRGNRSKLTILDD+SGIIRPSRLTLLLGPPSSGKTTLLLA
Sbjct: 121 PTIPNFIFNMTEALLRQLRIYRGNRSKLTILDDVSGIIRPSRLTLLLGPPSSGKTTLLLA 180
Query: 181 LAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVG 240
LAGRLGH L+VSGKITYNGH EFV PRTSAYVSQQDW VAEMTVRETL+FAG+CQGVG
Sbjct: 181 LAGRLGHDLKVSGKITYNGHRVNEFVAPRTSAYVSQQDWHVAEMTVRETLEFAGRCQGVG 240
Query: 241 SKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVG 300
K+DM+ ELARREKIAGIKP+EDLDIFMKS ALGGQ+TSLVVEYIMKILGLD CADTLVG
Sbjct: 241 FKFDMLLELARREKIAGIKPEEDLDIFMKSLALGGQETSLVVEYIMKILGLDICADTLVG 300
Query: 301 DEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTT 360
DEM KGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYL+HST ALDGTT
Sbjct: 301 DEMRKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLRHSTCALDGTT 360
Query: 361 VISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVT 420
+ISLLQPAPE YELFDDVILL EGQIVYQGPR +VLDFFA MGF CP+RKNVADFLQEVT
Sbjct: 361 LISLLQPAPETYELFDDVILLCEGQIVYQGPRDNVLDFFAYMGFRCPERKNVADFLQEVT 420
Query: 421 SKKDQEQYWSNPYLPYRYISPGKFAEAFHSYHTGKNLSEELAVPFDRRFNHPAALSTSKY 480
SKKDQEQYWS PYRYI PGKF EAF SYHTGK+LS EL VPFD+R+NHPAALST ++
Sbjct: 421 SKKDQEQYWSVANRPYRYIPPGKFVEAFRSYHTGKSLSRELEVPFDKRYNHPAALSTCRF 480
Query: 481 GEKRSELLKTSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHKTIDDGGLY 540
G KRSELLK SFNWQ LLMKRNSFIYVFKFIQL IVALITM+VFFRTTMHH T+ DGGLY
Sbjct: 481 GMKRSELLKISFNWQKLLMKRNSFIYVFKFIQLFIVALITMSVFFRTTMHHNTVFDGGLY 540
Query: 541 LGALYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIPTSLIESG 600
+G+LYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSW YTIP+W LSIPTSL+ESG
Sbjct: 541 VGSLYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWAYTIPAWVLSIPTSLMESG 600
Query: 601 FWVAVTYYVIGYDPNVVRFSRQLLLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSFAMLV 660
WVAVTYYV+GYDPN+ RF RQ LLYF LHQMSI LFRVIGSLGR+MIVANTFGSFAMLV
Sbjct: 601 LWVAVTYYVMGYDPNITRFFRQFLLYFSLHQMSISLFRVIGSLGRHMIVANTFGSFAMLV 660
Query: 661 VMALGGFIISRDSIPKWWIWGFWVSPLMYAQNAASVNEFLGHSWDKKAGN-SNFSLGEAI 719
VMALGG+IISR+ IP WWIWGFWVSPLMYAQNAASVNEFLGHSWDKK GN ++ SLGEA+
Sbjct: 661 VMALGGYIISREYIPSWWIWGFWVSPLMYAQNAASVNEFLGHSWDKKFGNDTSISLGEAL 720
Query: 720 LRQRSLFPESYWYWIGVGAMLGYTLLFNALFTFFLSYLNPLGKQQAVVSKKELQERDRRR 779
L+ RSLFPESYWYWIGVGA+LGY +LFN+LFT FL++LNPLG+QQ VVSK+ELQER++RR
Sbjct: 721 LKARSLFPESYWYWIGVGALLGYAVLFNSLFTLFLAHLNPLGRQQPVVSKEELQEREKRR 780
Query: 780 KGENVVIELREYLQRSSSLNGKYFKQKGMVLPFQPLSMAFGNINYFVDVPVELKQEGVLE 839
K GK+FKQKGMVLPFQPLSM+F NINYFVDVP+ELKQ+G++E
Sbjct: 781 K-------------------GKHFKQKGMVLPFQPLSMSFSNINYFVDVPLELKQQGIVE 821
Query: 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQET 899
++LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGG+IEG+IYISGYPKRQET
Sbjct: 822 EKLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGVIEGNIYISGYPKRQET 881
Query: 900 FARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGA 959
FARISGYCEQNDIHSPGLT+LESLLFSAWLRLPSE+++ETQ+AFVEEVMELVELT L+GA
Sbjct: 882 FARISGYCEQNDIHSPGLTLLESLLFSAWLRLPSEVDMETQQAFVEEVMELVELTPLAGA 941
Query: 960 LIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGR 1019
L+GLPG+NGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGR
Sbjct: 942 LVGLPGVNGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGR 1001
Query: 1020 TIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGSKSCELIKYFE 1066
TIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG +SCELIKYFE
Sbjct: 1002 TIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGPRSCELIKYFE 1048
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|280967727|gb|ACZ98533.1| putative ABC transporter [Malus x domestica] | Back alignment and taxonomy information |
|---|
Score = 1832 bits (4746), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 891/1074 (82%), Positives = 977/1074 (90%), Gaps = 8/1074 (0%)
Query: 1 MWNSAENVFSRTSSFRDEVEDEEALRWAALERLPTYARARRGIFKNVVGDVKEVDVSELA 60
MWNSAENVF+R+ SFR+E +DEEALRWAALERLPTYAR RRGIF+NVVGD E+DVSEL
Sbjct: 1 MWNSAENVFARSGSFREEGDDEEALRWAALERLPTYARVRRGIFRNVVGDTMEIDVSELE 60
Query: 61 VQEQRLVLDRLVNAVEDDPERFFDRMRKRCEAVDLELPKIEVRFQNLTVESFVHLGSRAL 120
+EQ+L+LDRLV++ +DDPE+FFDRMR+R +AV L PKIEVRFQ L VE+FVH+GSRAL
Sbjct: 61 AKEQKLLLDRLVSSADDDPEQFFDRMRRRFDAVALNFPKIEVRFQKLKVEAFVHVGSRAL 120
Query: 121 PTIPNFIFNMTEALLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLA 180
PTIPNF+FNM EAL RQLRIYRG RSKLTILD++SGI+RPSRLTLLLGPPSSGKTTLLLA
Sbjct: 121 PTIPNFVFNMAEALFRQLRIYRGQRSKLTILDNISGIVRPSRLTLLLGPPSSGKTTLLLA 180
Query: 181 LAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVG 240
LAGRLG LQ+SG +TYNGHG EFVP RTSAYVSQQDW VAEMTVRETL+FAG+CQGVG
Sbjct: 181 LAGRLGTGLQMSGNVTYNGHGLSEFVPQRTSAYVSQQDWHVAEMTVRETLEFAGRCQGVG 240
Query: 241 SKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVG 300
+KYDM+ ELARREK AGI PDEDLDIFMKS ALGG++TSLVVEYIMKILGLD CADTLVG
Sbjct: 241 TKYDMLVELARREKCAGIIPDEDLDIFMKSLALGGKETSLVVEYIMKILGLDICADTLVG 300
Query: 301 DEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTT 360
DEMLKGISGGQKKRLTTGELLVGPARVLFMDEIS GLDSSTTYQIIKYL+HSTRALD TT
Sbjct: 301 DEMLKGISGGQKKRLTTGELLVGPARVLFMDEISTGLDSSTTYQIIKYLRHSTRALDATT 360
Query: 361 VISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVT 420
VISLLQPAPE YELFDDVILL EGQIVYQGPR + LDFF+ MGF CP RKNVADFLQEV
Sbjct: 361 VISLLQPAPETYELFDDVILLCEGQIVYQGPRETALDFFSYMGFRCPLRKNVADFLQEVI 420
Query: 421 SKKDQEQYWSNPYLPYRYISPGKFAEAFHSYHTGKNLSEELAVPFDRRFNHPAALSTSKY 480
SKKDQEQYWSNP LPYRY+ P KF +A+ + GK LSEEL VPFD+R+NHPAAL+TS Y
Sbjct: 421 SKKDQEQYWSNPDLPYRYVPPAKFVDAYRLFQAGKTLSEELDVPFDKRYNHPAALATSLY 480
Query: 481 GEKRSELLKTSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHKTIDDGGLY 540
G KR ELLKTS+NWQLLLMKRN+FIY+FKFIQLL VA++TM+VFFR+T+HH TIDDGGLY
Sbjct: 481 GVKRCELLKTSYNWQLLLMKRNAFIYIFKFIQLLFVAMVTMSVFFRSTLHHNTIDDGGLY 540
Query: 541 LGALYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIPTSLIESG 600
LGALYFSMVIILFNGF EVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALS+P S IESG
Sbjct: 541 LGALYFSMVIILFNGFMEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSVPNSFIESG 600
Query: 601 FWVAVTYYVIGYDPNVVRFSRQLLLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSFAMLV 660
FWVA+TYYVIG+DP++ RF Q L+YF LHQMSI LFR++GSLGRNMIVANTFGSFAMLV
Sbjct: 601 FWVAITYYVIGFDPSITRFCGQFLIYFLLHQMSIALFRLMGSLGRNMIVANTFGSFAMLV 660
Query: 661 VMALGGFIISRDSIPKWWIWGFWVSPLMYAQNAASVNEFLGHSWDKKAGNSNFSLGEAIL 720
VMALGG+IIS+D IPKWWIWGFW SPLMYAQNAASVNEFLGH WDK+ GN LGEA+L
Sbjct: 661 VMALGGYIISKDRIPKWWIWGFWFSPLMYAQNAASVNEFLGHKWDKRIGNETIPLGEALL 720
Query: 721 RQRSLFPESYWYWIGVGAMLGYTLLFNALFTFFLSYLNPLGKQQAVVSKKELQERDRRRK 780
R RSLFP+SYW+WIG GA+LGYT+LFN LFTFFL+YLNPLGK+QAVV+K+ELQER+RRRK
Sbjct: 721 RARSLFPQSYWFWIGAGALLGYTILFNMLFTFFLAYLNPLGKRQAVVTKEELQERERRRK 780
Query: 781 GENVVIELREYLQRSSSLNGKYFKQKGMVLPFQPLSMAFGNINYFVDVPV--------EL 832
GE VVIELR+YLQ S SLN KYFKQ+GMVLPFQ LSM+F NINY+VDVP+ EL
Sbjct: 781 GETVVIELRQYLQHSESLNAKYFKQRGMVLPFQQLSMSFSNINYYVDVPLFLIQVRLQEL 840
Query: 833 KQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISG 892
KQ+G+ E++LQLL NVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGG IEG I+ISG
Sbjct: 841 KQQGIQEEKLQLLSNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGTIEGSIHISG 900
Query: 893 YPKRQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVE 952
YPKRQETFARISGYCEQ+DIHSP LTVLESLLFS WLRLPS++ELE QRAFVEEVMELVE
Sbjct: 901 YPKRQETFARISGYCEQSDIHSPCLTVLESLLFSVWLRLPSDVELEIQRAFVEEVMELVE 960
Query: 953 LTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVR 1012
LT LSGAL+GLPG++GLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDAR+AAIVMRTVR
Sbjct: 961 LTPLSGALVGLPGVDGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARSAAIVMRTVR 1020
Query: 1013 NIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGSKSCELIKYFE 1066
NIVNTGRTIVCTIHQPSIDIFESFDELLF+KRGGELIYAGPLG KSCELIKYFE
Sbjct: 1021 NIVNTGRTIVCTIHQPSIDIFESFDELLFLKRGGELIYAGPLGPKSCELIKYFE 1074
|
Source: Malus x domestica Species: Malus x domestica Genus: Malus Family: Rosaceae Order: Rosales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449443129|ref|XP_004139333.1| PREDICTED: ABC transporter G family member 32-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1823 bits (4723), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 882/1067 (82%), Positives = 979/1067 (91%), Gaps = 1/1067 (0%)
Query: 1 MWNSAENVFSRTSSFRDEVEDEEALRWAALERLPTYARARRGIFKNVVGDVKEVDVSELA 60
MWN+A+NVF RT+SFR++ EDEEALRWAALERLPTY+R RRGIFKN+VGD KE+DVSEL
Sbjct: 1 MWNTADNVFVRTASFREDGEDEEALRWAALERLPTYSRVRRGIFKNIVGDTKEIDVSELE 60
Query: 61 VQEQRLVLDRLVNAVEDDPERFFDRMRKRCEAVDLELPKIEVRFQNLTVESFVHLGSRAL 120
VQEQ+L++DRLV++V+DDPE FF R+R+R +AVDLE PKIEVRFQ LTVESFVH+G+RAL
Sbjct: 61 VQEQKLLIDRLVSSVDDDPEMFFQRVRRRFDAVDLEFPKIEVRFQQLTVESFVHIGTRAL 120
Query: 121 PTIPNFIFNMTEALLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLA 180
PTIPNF+ NM EALLR+L+IY RSKLTILD+++GIIRPSRLTLLLGPPSSGKTTLLLA
Sbjct: 121 PTIPNFMCNMMEALLRKLKIYSSQRSKLTILDNVNGIIRPSRLTLLLGPPSSGKTTLLLA 180
Query: 181 LAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVG 240
LAGRLG LQ SG+ITYNGHGF EFVP RT+AYVSQQD +AE+TVRETLDFAG+CQGVG
Sbjct: 181 LAGRLGSDLQQSGRITYNGHGFNEFVPQRTAAYVSQQDRHIAEITVRETLDFAGRCQGVG 240
Query: 241 SKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVG 300
KYDM+ ELARREKIAGIKPDEDLDIFMKS ALGGQ+TSLVVEYIMKILGLD CADTLVG
Sbjct: 241 FKYDMLMELARREKIAGIKPDEDLDIFMKSLALGGQETSLVVEYIMKILGLDVCADTLVG 300
Query: 301 DEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTT 360
DEMLKGISGGQKKRLTTGELL+G ARVLFMDEIS GLDSSTTYQIIKYL+HST ALD TT
Sbjct: 301 DEMLKGISGGQKKRLTTGELLIGSARVLFMDEISTGLDSSTTYQIIKYLRHSTCALDSTT 360
Query: 361 VISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVT 420
V+SLLQPAPE YELFDDVILL EGQI+YQGPR SVL+FF +MGF+CP+RKNVADFLQEV
Sbjct: 361 VVSLLQPAPETYELFDDVILLCEGQIIYQGPRDSVLNFFTAMGFTCPERKNVADFLQEVI 420
Query: 421 SKKDQEQYWSNPYLPYRYISPGKFAEAFHSYHTGKNLSEELAVPFDRRFNHPAALSTSKY 480
SKKDQEQYWS P PY++I KFA+AF YH GKNL+EEL VPFDRR+NHPA+LS+S+Y
Sbjct: 421 SKKDQEQYWSVPDRPYQFIPAAKFAKAFRLYHVGKNLTEELEVPFDRRYNHPASLSSSQY 480
Query: 481 GEKRSELLKTSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHKTIDDGGLY 540
G KR ELLKTSF+ LLMKRNSFIYVFKFIQLL+VA+ITM+VFFRTTM H TIDDGGLY
Sbjct: 481 GVKRLELLKTSFSLLRLLMKRNSFIYVFKFIQLLLVAMITMSVFFRTTMKHDTIDDGGLY 540
Query: 541 LGALYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIPTSLIESG 600
LGALYFS VIILFNGFTEVSMLVAKLPV+YKHRDLHFYPSW+YT+PSW LSIP SL+ESG
Sbjct: 541 LGALYFSTVIILFNGFTEVSMLVAKLPVIYKHRDLHFYPSWIYTLPSWILSIPISLLESG 600
Query: 601 FWVAVTYYVIGYDPNVVRFSRQLLLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSFAMLV 660
WV VTYYVIGYDP + RF RQLLL+F LHQMSI LFR++GSLGRNMIVANTFGSF MLV
Sbjct: 601 IWVVVTYYVIGYDPAITRFLRQLLLFFSLHQMSIALFRLMGSLGRNMIVANTFGSFTMLV 660
Query: 661 VMALGGFIISRDSIPKWWIWGFWVSPLMYAQNAASVNEFLGHSWDKKAG-NSNFSLGEAI 719
VMALGG+IISRD IPKWWIWGFW SPLMYAQNAASVNEFLGHSWDK G N++ SLGE++
Sbjct: 661 VMALGGYIISRDRIPKWWIWGFWWSPLMYAQNAASVNEFLGHSWDKSVGKNTSMSLGESL 720
Query: 720 LRQRSLFPESYWYWIGVGAMLGYTLLFNALFTFFLSYLNPLGKQQAVVSKKELQERDRRR 779
L+ RSLF ESYWYWIGVGA+LGYT++FN+LFTFFL+YL PLGK QAVVSK+ELQER++RR
Sbjct: 721 LKARSLFSESYWYWIGVGALLGYTVIFNSLFTFFLAYLKPLGKSQAVVSKEELQEREKRR 780
Query: 780 KGENVVIELREYLQRSSSLNGKYFKQKGMVLPFQPLSMAFGNINYFVDVPVELKQEGVLE 839
KGE VIELR YLQ S SLNGKYFKQ+GMVLPFQ LSM+F NINY+VDVP+ELKQ+GV E
Sbjct: 781 KGETTVIELRHYLQYSGSLNGKYFKQRGMVLPFQQLSMSFSNINYYVDVPMELKQQGVTE 840
Query: 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQET 899
+RLQLLVNV+G+FRPGVLTAL+GVSGAGKTTLMDVLAGRKTGG+IEG I+ISGYPKRQ+T
Sbjct: 841 ERLQLLVNVSGSFRPGVLTALLGVSGAGKTTLMDVLAGRKTGGVIEGSIHISGYPKRQDT 900
Query: 900 FARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGA 959
FAR+SGYCEQ DIHSP LT++ESLLFSAWLRLPS+++LETQRAFV+EVMELVELT LSGA
Sbjct: 901 FARVSGYCEQTDIHSPCLTIMESLLFSAWLRLPSDVDLETQRAFVDEVMELVELTPLSGA 960
Query: 960 LIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGR 1019
L+GLPG++GLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDAR+AAIVMRTVRNIVNTGR
Sbjct: 961 LVGLPGVDGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARSAAIVMRTVRNIVNTGR 1020
Query: 1020 TIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGSKSCELIKYFE 1066
TIVCTIHQPSIDIFESFDELL MKRGGELIYAGPLG KS ELIKYFE
Sbjct: 1021 TIVCTIHQPSIDIFESFDELLLMKRGGELIYAGPLGPKSRELIKYFE 1067
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449523499|ref|XP_004168761.1| PREDICTED: LOW QUALITY PROTEIN: ABC transporter G family member 32-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1820 bits (4715), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 881/1067 (82%), Positives = 978/1067 (91%), Gaps = 1/1067 (0%)
Query: 1 MWNSAENVFSRTSSFRDEVEDEEALRWAALERLPTYARARRGIFKNVVGDVKEVDVSELA 60
MWN+A+NVF RT+SFR++ EDEEALRWAALERLPTY+R RRGIFKN+VGD KE+DVSEL
Sbjct: 1 MWNTADNVFVRTASFREDGEDEEALRWAALERLPTYSRVRRGIFKNIVGDTKEIDVSELE 60
Query: 61 VQEQRLVLDRLVNAVEDDPERFFDRMRKRCEAVDLELPKIEVRFQNLTVESFVHLGSRAL 120
VQEQ+L++DRLV++V+DDPE FF R+R+R +AVDLE PKIEVRFQ LTVESFVH+G+RAL
Sbjct: 61 VQEQKLLIDRLVSSVDDDPEMFFQRVRRRFDAVDLEFPKIEVRFQQLTVESFVHIGTRAL 120
Query: 121 PTIPNFIFNMTEALLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLA 180
PTIPNF+ NM EALLR+L+IY RSKLTILD+++GIIRPSRLTLLLGPPSSGKTTLLLA
Sbjct: 121 PTIPNFMCNMMEALLRKLKIYSSQRSKLTILDNVNGIIRPSRLTLLLGPPSSGKTTLLLA 180
Query: 181 LAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVG 240
LAGRLG LQ SG+ITYNGHGF EFVP RT+AYVSQQD +AE+TVRETLDFAG+CQGVG
Sbjct: 181 LAGRLGSDLQQSGRITYNGHGFNEFVPQRTAAYVSQQDRHIAEITVRETLDFAGRCQGVG 240
Query: 241 SKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVG 300
KYDM+ ELARREKIAGIKPDEDLDIFMKS ALGGQ+TSLVVEYIMKILGLD CADTLVG
Sbjct: 241 FKYDMLMELARREKIAGIKPDEDLDIFMKSLALGGQETSLVVEYIMKILGLDVCADTLVG 300
Query: 301 DEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTT 360
DEMLKGISGGQKKRLTTGELL+G ARVLFMDEIS GLDSSTTYQIIKYL+HST ALD TT
Sbjct: 301 DEMLKGISGGQKKRLTTGELLIGSARVLFMDEISTGLDSSTTYQIIKYLRHSTCALDSTT 360
Query: 361 VISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVT 420
V+SLLQPAPE YELFDDVILL EGQI+YQGPR SVL+FF +MGF+CP+RKNVADFLQEV
Sbjct: 361 VVSLLQPAPETYELFDDVILLCEGQIIYQGPRDSVLNFFTAMGFTCPERKNVADFLQEVI 420
Query: 421 SKKDQEQYWSNPYLPYRYISPGKFAEAFHSYHTGKNLSEELAVPFDRRFNHPAALSTSKY 480
SKKDQEQYWS P PY++I KFA+AF YH GKNL+EEL VPFDRR+NHPA+LS+S+Y
Sbjct: 421 SKKDQEQYWSVPDRPYQFIPAAKFAKAFRLYHVGKNLTEELEVPFDRRYNHPASLSSSQY 480
Query: 481 GEKRSELLKTSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHKTIDDGGLY 540
G KR ELLKTSF+ LLMKRNSFIYVFKFIQLL+VA+ITM+VFFRTTM H TIDDGGLY
Sbjct: 481 GVKRLELLKTSFSLLRLLMKRNSFIYVFKFIQLLLVAMITMSVFFRTTMKHDTIDDGGLY 540
Query: 541 LGALYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIPTSLIESG 600
LGALYFS VIILFNGFTEVSMLVAKLPV+YKHRDLHFYPSW+YT+PSW LSIP SL+ESG
Sbjct: 541 LGALYFSTVIILFNGFTEVSMLVAKLPVIYKHRDLHFYPSWIYTLPSWILSIPISLLESG 600
Query: 601 FWVAVTYYVIGYDPNVVRFSRQLLLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSFAMLV 660
WV VTYYVIGYDP + RF RQLLL+F LHQMSI LFR++GSLGRNMIVANTFGSF MLV
Sbjct: 601 IWVVVTYYVIGYDPAITRFLRQLLLFFSLHQMSIALFRLMGSLGRNMIVANTFGSFTMLV 660
Query: 661 VMALGGFIISRDSIPKWWIWGFWVSPLMYAQNAASVNEFLGHSWDKKAG-NSNFSLGEAI 719
VMALGG+IISRD IPKWWIWGFW SPLMYAQNAASVNEFLGHSWDK G N++ SLGE++
Sbjct: 661 VMALGGYIISRDRIPKWWIWGFWWSPLMYAQNAASVNEFLGHSWDKSVGKNTSMSLGESL 720
Query: 720 LRQRSLFPESYWYWIGVGAMLGYTLLFNALFTFFLSYLNPLGKQQAVVSKKELQERDRRR 779
L+ RSL ESYWYWIGVGA+LGYT++FN+LFTFFL+YL PLGK QAVVSK+ELQER++RR
Sbjct: 721 LKARSLVSESYWYWIGVGALLGYTVIFNSLFTFFLAYLKPLGKSQAVVSKEELQEREKRR 780
Query: 780 KGENVVIELREYLQRSSSLNGKYFKQKGMVLPFQPLSMAFGNINYFVDVPVELKQEGVLE 839
KGE VIELR YLQ S SLNGKYFKQ+GMVLPFQ LSM+F NINY+VDVP+ELKQ+GV E
Sbjct: 781 KGETTVIELRHYLQYSGSLNGKYFKQRGMVLPFQQLSMSFSNINYYVDVPMELKQQGVTE 840
Query: 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQET 899
+RLQLLVNV+G+FRPGVLTAL+GVSGAGKTTLMDVLAGRKTGG+IEG I+ISGYPKRQ+T
Sbjct: 841 ERLQLLVNVSGSFRPGVLTALLGVSGAGKTTLMDVLAGRKTGGVIEGSIHISGYPKRQDT 900
Query: 900 FARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGA 959
FAR+SGYCEQ DIHSP LT++ESLLFSAWLRLPS+++LETQRAFV+EVMELVELT LSGA
Sbjct: 901 FARVSGYCEQTDIHSPCLTIMESLLFSAWLRLPSDVDLETQRAFVDEVMELVELTPLSGA 960
Query: 960 LIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGR 1019
L+GLPG++GLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDAR+AAIVMRTVRNIVNTGR
Sbjct: 961 LVGLPGVDGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARSAAIVMRTVRNIVNTGR 1020
Query: 1020 TIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGSKSCELIKYFE 1066
TIVCTIHQPSIDIFESFDELL MKRGGELIYAGPLG KS ELIKYFE
Sbjct: 1021 TIVCTIHQPSIDIFESFDELLLMKRGGELIYAGPLGPKSRELIKYFE 1067
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356511619|ref|XP_003524521.1| PREDICTED: ABC transporter G family member 32-like isoform 1 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1815 bits (4701), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 891/1067 (83%), Positives = 979/1067 (91%), Gaps = 2/1067 (0%)
Query: 1 MWNSAENVFSRTSSFRDEVEDEEALRWAALERLPTYARARRGIFKNVVGDVKEVDVSELA 60
MWNSAEN F+R+ SFR+E EDEEALRWAAL+RLPTY RARRGIFKNV+GD+KE+DV +L
Sbjct: 1 MWNSAENAFARSPSFREEGEDEEALRWAALQRLPTYKRARRGIFKNVIGDMKEIDVRDLQ 60
Query: 61 VQEQRLVLDRLVNAVEDDPERFFDRMRKRCEAVDLELPKIEVRFQNLTVESFVHLGSRAL 120
QEQRL+L RLV+ V++DPERFF RMR R +AV LE PKIEVRFQNLTVE++VH+GSRAL
Sbjct: 61 AQEQRLLLQRLVDCVDNDPERFFQRMRSRFDAVALEFPKIEVRFQNLTVETYVHVGSRAL 120
Query: 121 PTIPNFIFNMTEALLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLA 180
PTIPNFI NMTEALLRQLRIYR RSKLTIL D+SGIIRPSRLTLLLGPPSSGKTTLLLA
Sbjct: 121 PTIPNFICNMTEALLRQLRIYRRKRSKLTILADISGIIRPSRLTLLLGPPSSGKTTLLLA 180
Query: 181 LAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVG 240
LAGRLG LQ+SG ITYNGH KEFVP RTSAYVSQQDW VAEMTVRETL FAG+CQGVG
Sbjct: 181 LAGRLGPGLQMSGDITYNGHSLKEFVPQRTSAYVSQQDWHVAEMTVRETLQFAGRCQGVG 240
Query: 241 SKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVG 300
K+DM+ ELARREK AGIKPDEDLD+FMKS ALGGQ+T+LVVEYIMKILGLD C DTLVG
Sbjct: 241 FKFDMLLELARREKNAGIKPDEDLDLFMKSLALGGQETNLVVEYIMKILGLDICGDTLVG 300
Query: 301 DEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTT 360
DEMLKGISGGQKKRLTTGELL+GPARVLFMDEIS GLDSSTTYQII+YLKHSTRALD TT
Sbjct: 301 DEMLKGISGGQKKRLTTGELLIGPARVLFMDEISTGLDSSTTYQIIRYLKHSTRALDATT 360
Query: 361 VISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVT 420
++SLLQPAPE YELFDDVILL EGQIVYQGPR + +DFF MGFSCP+RKNVADFLQEVT
Sbjct: 361 IVSLLQPAPETYELFDDVILLCEGQIVYQGPREAAVDFFKQMGFSCPERKNVADFLQEVT 420
Query: 421 SKKDQEQYWSNPYLPYRYISPGKFAEAFHSYHTGKNLSEELAVPFDRRFNHPAALSTSKY 480
SKKDQEQYWS PYRY+ GKFAEAF Y G+ LSE+L +PFDRR+NHPAAL+T Y
Sbjct: 421 SKKDQEQYWSILDRPYRYVPVGKFAEAFSLYREGRILSEKLNIPFDRRYNHPAALATLSY 480
Query: 481 GEKRSELLKTSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHKTIDDGGLY 540
G KR ELLKT++ WQ LLMKRNSFIYVFKF+QLL+VALITM+VFFRTTMHH TIDDGGLY
Sbjct: 481 GAKRLELLKTNYQWQKLLMKRNSFIYVFKFVQLLLVALITMSVFFRTTMHHNTIDDGGLY 540
Query: 541 LGALYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIPTSLIESG 600
LGALYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSW YT+PSW LSIPTSLIE+G
Sbjct: 541 LGALYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWAYTLPSWFLSIPTSLIEAG 600
Query: 601 FWVAVTYYVIGYDPNVVRFSRQLLLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSFAMLV 660
WVAV+YY GYDP RF RQ LL+FFLHQMSIGLFR+IGSLGRNMIV+NTFGSFAMLV
Sbjct: 601 CWVAVSYYASGYDPAFTRFLRQFLLFFFLHQMSIGLFRLIGSLGRNMIVSNTFGSFAMLV 660
Query: 661 VMALGGFIISRDSIPKWWIWGFWVSPLMYAQNAASVNEFLGHSWDKKAGN-SNFSLGEAI 719
VMALGG+IISRD IP WW+WGFW+SPLMYAQN+ASVNEFLGHSWDKKAGN + +SLGEA+
Sbjct: 661 VMALGGYIISRDRIPVWWVWGFWISPLMYAQNSASVNEFLGHSWDKKAGNQTTYSLGEAV 720
Query: 720 LRQRSLFPESYWYWIGVGAMLGYTLLFNALFTFFLSYLNPLGKQQAVVSKKELQERDRRR 779
L++RSL+ ESYWYWIG+GAM+GYT+LFN LFT FL+ LNPLG+QQAVVSK ELQER++RR
Sbjct: 721 LKERSLYAESYWYWIGLGAMVGYTILFNILFTIFLANLNPLGRQQAVVSKDELQEREKRR 780
Query: 780 KGENVVIELREYLQRSSSLNGKYFKQKGMVLPFQPLSMAFGNINYFVDVPVELKQEGVLE 839
KGE+VVIELREYLQRS+S +GK+FKQ+GMVLPFQPL+MAF NINY+VDVP+ELKQ+G++E
Sbjct: 781 KGESVVIELREYLQRSAS-SGKHFKQRGMVLPFQPLAMAFSNINYYVDVPLELKQQGIVE 839
Query: 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQET 899
D+LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGG+IEG +YISGYPKRQ++
Sbjct: 840 DKLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGVIEGSVYISGYPKRQDS 899
Query: 900 FARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGA 959
FARISGYCEQ D+HSP LTV ESLLFSAWLRL S+++LETQ+AFVEEVMELVELT LSGA
Sbjct: 900 FARISGYCEQTDVHSPCLTVWESLLFSAWLRLSSDVDLETQKAFVEEVMELVELTPLSGA 959
Query: 960 LIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGR 1019
L+GLPGI+GLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGR
Sbjct: 960 LVGLPGIDGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGR 1019
Query: 1020 TIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGSKSCELIKYFE 1066
TIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG KSCELI YFE
Sbjct: 1020 TIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGPKSCELISYFE 1066
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356563075|ref|XP_003549791.1| PREDICTED: ABC transporter G family member 32-like isoform 1 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1811 bits (4692), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 889/1067 (83%), Positives = 979/1067 (91%), Gaps = 2/1067 (0%)
Query: 1 MWNSAENVFSRTSSFRDEVEDEEALRWAALERLPTYARARRGIFKNVVGDVKEVDVSELA 60
MWNSAEN F+R+SSFR+E EDEEALRWAALERLPTY RARRGIFKNV+GD+KE+DV +L
Sbjct: 1 MWNSAENAFARSSSFREETEDEEALRWAALERLPTYKRARRGIFKNVIGDIKEIDVRDLQ 60
Query: 61 VQEQRLVLDRLVNAVEDDPERFFDRMRKRCEAVDLELPKIEVRFQNLTVESFVHLGSRAL 120
QEQRL+L+RLV+ V++DPERFF RMR R +AV L PKIEVRFQ+LTVE++VH+GSRAL
Sbjct: 61 AQEQRLLLERLVDCVDNDPERFFQRMRSRFDAVGLHFPKIEVRFQDLTVETYVHVGSRAL 120
Query: 121 PTIPNFIFNMTEALLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLA 180
PTIPNFI NMTEALLRQLR+YR RSKLTIL D+SGII+PSRLTLLLGPPSSGKTTLLLA
Sbjct: 121 PTIPNFICNMTEALLRQLRMYRRKRSKLTILADISGIIKPSRLTLLLGPPSSGKTTLLLA 180
Query: 181 LAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVG 240
LAGRLG LQ+SG ITYNGH KEFVP RTSAYVSQQD VAEMTVRETL FAG+CQGVG
Sbjct: 181 LAGRLGPGLQMSGNITYNGHSLKEFVPQRTSAYVSQQDRHVAEMTVRETLQFAGRCQGVG 240
Query: 241 SKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVG 300
K+DM+ ELARREK AGIKPDEDLD+FMKS ALGGQ+T+LVVEYIMKILGLD C DTLVG
Sbjct: 241 FKFDMLLELARREKNAGIKPDEDLDLFMKSLALGGQETNLVVEYIMKILGLDICGDTLVG 300
Query: 301 DEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTT 360
DEMLKGISGGQKKRLTTGELL+GPARVLFMDEIS GLDSSTTYQII+YLKHSTRALDGTT
Sbjct: 301 DEMLKGISGGQKKRLTTGELLIGPARVLFMDEISTGLDSSTTYQIIRYLKHSTRALDGTT 360
Query: 361 VISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVT 420
++SLLQPAPE YELFDDVILL EGQIVYQGPR + +DFF MGFSCP+RKNVADFLQEVT
Sbjct: 361 IVSLLQPAPETYELFDDVILLCEGQIVYQGPREAAVDFFKQMGFSCPERKNVADFLQEVT 420
Query: 421 SKKDQEQYWSNPYLPYRYISPGKFAEAFHSYHTGKNLSEELAVPFDRRFNHPAALSTSKY 480
SKKDQEQYWS P PYRY+ GKFAEAF Y G+ LSE+L +PFDRR+NHPAAL+T Y
Sbjct: 421 SKKDQEQYWSVPDRPYRYVPVGKFAEAFSLYREGRILSEQLNLPFDRRYNHPAALATVSY 480
Query: 481 GEKRSELLKTSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHKTIDDGGLY 540
G KR ELLKT++ WQ LLMKRNSFIYVFKF+QLL+VALITM+VFFRTTMHH TIDDGGLY
Sbjct: 481 GAKRLELLKTNYQWQKLLMKRNSFIYVFKFVQLLLVALITMSVFFRTTMHHNTIDDGGLY 540
Query: 541 LGALYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIPTSLIESG 600
LGALYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSW YT+PSW LSIPTSLIE+G
Sbjct: 541 LGALYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWAYTLPSWFLSIPTSLIEAG 600
Query: 601 FWVAVTYYVIGYDPNVVRFSRQLLLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSFAMLV 660
WV V+YY GYDP RF RQ LL+FFLHQMSIGLFR+IGSLGRNMIV+NTFGSFAMLV
Sbjct: 601 CWVTVSYYASGYDPAFTRFLRQFLLFFFLHQMSIGLFRLIGSLGRNMIVSNTFGSFAMLV 660
Query: 661 VMALGGFIISRDSIPKWWIWGFWVSPLMYAQNAASVNEFLGHSWDKKAGN-SNFSLGEAI 719
VMALGG+IISRD IP WWIWGFW+SPLMYAQN+ASVNEFLGHSWDKKAGN + +SLGEA+
Sbjct: 661 VMALGGYIISRDRIPVWWIWGFWISPLMYAQNSASVNEFLGHSWDKKAGNQTTYSLGEAV 720
Query: 720 LRQRSLFPESYWYWIGVGAMLGYTLLFNALFTFFLSYLNPLGKQQAVVSKKELQERDRRR 779
L++RSL+ E+YWYWIG+GAM+GYT+LFN LFT FL+YLNPLG+QQAVVSK ELQER++RR
Sbjct: 721 LKERSLYAENYWYWIGLGAMVGYTILFNILFTIFLAYLNPLGRQQAVVSKDELQEREKRR 780
Query: 780 KGENVVIELREYLQRSSSLNGKYFKQKGMVLPFQPLSMAFGNINYFVDVPVELKQEGVLE 839
KGE+VVIELREYLQRS+S +GK+FKQ+GMVLPFQPLSMAF NINY+VDVP+ELKQ+G++E
Sbjct: 781 KGESVVIELREYLQRSAS-SGKHFKQRGMVLPFQPLSMAFSNINYYVDVPLELKQQGIVE 839
Query: 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQET 899
D+LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGG+IEG +YISGYPKRQ++
Sbjct: 840 DKLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGVIEGSVYISGYPKRQDS 899
Query: 900 FARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGA 959
FARISGYCEQ D+HSP LTV ESLLFSAWLRL S+++ ETQ+AFVEEVMELVELT LSGA
Sbjct: 900 FARISGYCEQTDVHSPCLTVWESLLFSAWLRLSSDVDFETQKAFVEEVMELVELTPLSGA 959
Query: 960 LIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGR 1019
L+GLPGI+GLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGR
Sbjct: 960 LVGLPGIDGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGR 1019
Query: 1020 TIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGSKSCELIKYFE 1066
TIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG KS ELI YFE
Sbjct: 1020 TIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGPKSSELISYFE 1066
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225445364|ref|XP_002284885.1| PREDICTED: ABC transporter G family member 32 [Vitis vinifera] gi|297738886|emb|CBI28131.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1798 bits (4657), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 893/1068 (83%), Positives = 979/1068 (91%), Gaps = 2/1068 (0%)
Query: 1 MWNSAENVFSRTSSFRDEVEDEEALRWAALERLPTYARARRGIFKNVVGDVKEVDVSELA 60
MWNS ENVF+R+ SFR++ +DEEALRWAALERLPTY R RRGIF N+VGD KEVD++EL
Sbjct: 1 MWNSVENVFARSESFREDGDDEEALRWAALERLPTYDRVRRGIFTNIVGDKKEVDLNELE 60
Query: 61 VQEQRLVLDRLVNAVEDDPERFFDRMRKRCEAVDLELPKIEVRFQNLTVESFVHLGSRAL 120
++E+++VLDRLVN++E+D ERFF R+R+R +AVDLE P+IEVRFQ+L V+SFVH+GSRAL
Sbjct: 61 LEERKVVLDRLVNSIEEDAERFFGRIRRRFDAVDLEFPEIEVRFQHLVVDSFVHVGSRAL 120
Query: 121 PTIPNFIFNMTEALLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLA 180
PTIPNFIFNM+EALLR+LRIY+G + KLTILDD+SGIIRPSRLTLLLGPPSSGKTTLLLA
Sbjct: 121 PTIPNFIFNMSEALLRKLRIYKGMQKKLTILDDISGIIRPSRLTLLLGPPSSGKTTLLLA 180
Query: 181 LAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVG 240
LAGRLG L+VSG+ITYNGH EFVP RTSAYVSQ DW VAEMTVRETL+F+G+CQGVG
Sbjct: 181 LAGRLGSDLKVSGRITYNGHNLNEFVPQRTSAYVSQYDWHVAEMTVRETLEFSGRCQGVG 240
Query: 241 SKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVG 300
KYDM+ ELARREK AGI PDEDLDIF+K+ ALGGQ+TSLVVEYI+KILGLD CADTLVG
Sbjct: 241 FKYDMLLELARREKAAGIIPDEDLDIFIKALALGGQETSLVVEYILKILGLDICADTLVG 300
Query: 301 DEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTT 360
DEMLKGISGGQKKRLTTGELLVGPA+VLFMDEIS GLDSSTTYQIIKYL+HST AL GTT
Sbjct: 301 DEMLKGISGGQKKRLTTGELLVGPAKVLFMDEISTGLDSSTTYQIIKYLRHSTCALGGTT 360
Query: 361 VISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVT 420
++SLLQPAPE YELFDDV+LL EGQIVYQGPR + LDFFA MGFSCP+RKNVADFLQEV
Sbjct: 361 IVSLLQPAPETYELFDDVMLLCEGQIVYQGPRDAALDFFAYMGFSCPERKNVADFLQEVV 420
Query: 421 SKKDQEQYWSNPYLPYRYISPGKFAEAFHSYHTGKNLSEELAVPFDRRFNHPAALSTSKY 480
SKKDQEQYWS PYRYI KFAEAF SY G+NL EEL VPFDRR+NHPAALSTS Y
Sbjct: 421 SKKDQEQYWSVLDRPYRYIPVAKFAEAFRSYRAGRNLYEELEVPFDRRYNHPAALSTSSY 480
Query: 481 GEKRSELLKTSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHKTIDDGGLY 540
G KRSELLKTSF WQ LLMKRNSFIYVFKFIQLL VALITMTVFFRTTMHH T+DDGGLY
Sbjct: 481 GVKRSELLKTSFYWQKLLMKRNSFIYVFKFIQLLFVALITMTVFFRTTMHHHTVDDGGLY 540
Query: 541 LGALYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIPTSLIESG 600
LGA+YFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYP WVYT+PSW LSIPTSLIESG
Sbjct: 541 LGAMYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPCWVYTLPSWVLSIPTSLIESG 600
Query: 601 FWVAVTYYVIGYDPNVVRFSRQLLLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSFAMLV 660
FWVAVTYYV+GYDP + RF +Q L++FFLHQMSI LFRV+GSLGRNMIVANTFGSFAMLV
Sbjct: 601 FWVAVTYYVVGYDPAITRFFQQFLIFFFLHQMSIALFRVMGSLGRNMIVANTFGSFAMLV 660
Query: 661 VMALGGFIISRDSIPKWWIWGFWVSPLMYAQNAASVNEFLGHSWDKKAGN-SNFSLGEAI 719
VMALGG+IISRDSIP WW+WGFW SPLMYAQNAASVNEFLGHSWDK+ N +NFSLGE +
Sbjct: 661 VMALGGYIISRDSIPSWWVWGFWFSPLMYAQNAASVNEFLGHSWDKRPRNDTNFSLGEEV 720
Query: 720 LRQRSLFPESYWYWIGVGAMLGYTLLFNALFTFFLSYLNPLGKQQAVVSKKELQERDRRR 779
LR RSLFPESYWYWIGVGA+ GYT+LFN LFT FL+YLNPLGK+QAVVSK+EL+++D RR
Sbjct: 721 LRARSLFPESYWYWIGVGALFGYTVLFNILFTVFLTYLNPLGKRQAVVSKEELKDKDMRR 780
Query: 780 KGENVVIELREYLQRSSSLNGKYFK-QKGMVLPFQPLSMAFGNINYFVDVPVELKQEGVL 838
GE VVIELR+YLQ S S+ K FK QKGMVLPFQPLSM F NINYFVDVP+ELKQ+G++
Sbjct: 781 NGETVVIELRQYLQHSDSVAEKKFKQQKGMVLPFQPLSMCFKNINYFVDVPLELKQQGIV 840
Query: 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE 898
EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGG+IEG I+ISGYPK+QE
Sbjct: 841 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGVIEGSIHISGYPKKQE 900
Query: 899 TFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSG 958
TFARISGYCEQ+DIHSP LTVLESLLFSAWLRLPS+++LETQRAFVEEVMELVELT LSG
Sbjct: 901 TFARISGYCEQSDIHSPCLTVLESLLFSAWLRLPSDVDLETQRAFVEEVMELVELTQLSG 960
Query: 959 ALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTG 1018
AL+GLPGI+GLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTG
Sbjct: 961 ALVGLPGIDGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTG 1020
Query: 1019 RTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGSKSCELIKYFE 1066
RTIVCTIHQPSIDIFESFDELLFMKRGGELIYAG LG KSCELI++FE
Sbjct: 1021 RTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGRLGPKSCELIQFFE 1068
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356511621|ref|XP_003524522.1| PREDICTED: ABC transporter G family member 32-like isoform 2 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1798 bits (4657), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 889/1075 (82%), Positives = 977/1075 (90%), Gaps = 10/1075 (0%)
Query: 1 MWNSAENVFSRTSSFRDEVEDEEALRWAALERLPTYARARRGIFKNVVGDVKEVDVSELA 60
MWNSAEN F+R+ SFR+E EDEEALRWAAL+RLPTY RARRGIFKNV+GD+KE+DV +L
Sbjct: 1 MWNSAENAFARSPSFREEGEDEEALRWAALQRLPTYKRARRGIFKNVIGDMKEIDVRDLQ 60
Query: 61 VQEQRLVLDRLVNAVEDDPERFFDRMRKRCEAVDLELPKIEVRFQNLTVESFVHLGSRAL 120
QEQRL+L RLV+ V++DPERFF RMR R +AV LE PKIEVRFQNLTVE++VH+GSRAL
Sbjct: 61 AQEQRLLLQRLVDCVDNDPERFFQRMRSRFDAVALEFPKIEVRFQNLTVETYVHVGSRAL 120
Query: 121 PTIPNFIFNMTEALLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLA 180
PTIPNFI NMTEALLRQLRIYR RSKLTIL D+SGIIRPSRLTLLLGPPSSGKTTLLLA
Sbjct: 121 PTIPNFICNMTEALLRQLRIYRRKRSKLTILADISGIIRPSRLTLLLGPPSSGKTTLLLA 180
Query: 181 LAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVG 240
LAGRLG LQ+SG ITYNGH KEFVP RTSAYVSQQDW VAEMTVRETL FAG+CQGVG
Sbjct: 181 LAGRLGPGLQMSGDITYNGHSLKEFVPQRTSAYVSQQDWHVAEMTVRETLQFAGRCQGVG 240
Query: 241 SKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVG 300
K+DM+ ELARREK AGIKPDEDLD+FMKS ALGGQ+T+LVVEYIMKILGLD C DTLVG
Sbjct: 241 FKFDMLLELARREKNAGIKPDEDLDLFMKSLALGGQETNLVVEYIMKILGLDICGDTLVG 300
Query: 301 DEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTT 360
DEMLKGISGGQKKRLTTGELL+GPARVLFMDEIS GLDSSTTYQII+YLKHSTRALD TT
Sbjct: 301 DEMLKGISGGQKKRLTTGELLIGPARVLFMDEISTGLDSSTTYQIIRYLKHSTRALDATT 360
Query: 361 VISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVT 420
++SLLQPAPE YELFDDVILL EGQIVYQGPR + +DFF MGFSCP+RKNVADFLQEVT
Sbjct: 361 IVSLLQPAPETYELFDDVILLCEGQIVYQGPREAAVDFFKQMGFSCPERKNVADFLQEVT 420
Query: 421 SKKDQEQYWSNPYLPYRYISPGKFAEAFHSYHTGKNLSEELAVPFDRRFNHPAALSTSKY 480
SKKDQEQYWS PYRY+ GKFAEAF Y G+ LSE+L +PFDRR+NHPAAL+T Y
Sbjct: 421 SKKDQEQYWSILDRPYRYVPVGKFAEAFSLYREGRILSEKLNIPFDRRYNHPAALATLSY 480
Query: 481 GEKRSELLKTSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHKTIDDGGLY 540
G KR ELLKT++ WQ LLMKRNSFIYVFKF+QLL+VALITM+VFFRTTMHH TIDDGGLY
Sbjct: 481 GAKRLELLKTNYQWQKLLMKRNSFIYVFKFVQLLLVALITMSVFFRTTMHHNTIDDGGLY 540
Query: 541 LGALYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIPTSLIESG 600
LGALYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSW YT+PSW LSIPTSLIE+G
Sbjct: 541 LGALYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWAYTLPSWFLSIPTSLIEAG 600
Query: 601 FWVAVTYYVIGYDPNVVRFSRQLLLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSFAMLV 660
WVAV+YY GYDP RF RQ LL+FFLHQMSIGLFR+IGSLGRNMIV+NTFGSFAMLV
Sbjct: 601 CWVAVSYYASGYDPAFTRFLRQFLLFFFLHQMSIGLFRLIGSLGRNMIVSNTFGSFAMLV 660
Query: 661 VMALGGFIISRDSIPKWWIWGFWVSPLMYAQNAASVNEFLGHSWDKKAGN-SNFSLGEAI 719
VMALGG+IISRD IP WW+WGFW+SPLMYAQN+ASVNEFLGHSWDKKAGN + +SLGEA+
Sbjct: 661 VMALGGYIISRDRIPVWWVWGFWISPLMYAQNSASVNEFLGHSWDKKAGNQTTYSLGEAV 720
Query: 720 LRQRSLFPESYWYWIGVGAMLGYTLLFNALFTFFLSYLNPLGKQQAVVSKKELQERDRRR 779
L++RSL+ ESYWYWIG+GAM+GYT+LFN LFT FL+ LNPLG+QQAVVSK ELQER++RR
Sbjct: 721 LKERSLYAESYWYWIGLGAMVGYTILFNILFTIFLANLNPLGRQQAVVSKDELQEREKRR 780
Query: 780 KGENVVIELREYLQRSSSLNGKYFKQKGMVLPFQPLSMAFGNINYFVDVPVEL------- 832
KGE+VVIELREYLQRS+S +GK+FKQ+GMVLPFQPL+MAF NINY+VDVP+
Sbjct: 781 KGESVVIELREYLQRSAS-SGKHFKQRGMVLPFQPLAMAFSNINYYVDVPLYFIQLLLQE 839
Query: 833 -KQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYIS 891
KQ+G++ED+LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGG+IEG +YIS
Sbjct: 840 LKQQGIVEDKLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGVIEGSVYIS 899
Query: 892 GYPKRQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELV 951
GYPKRQ++FARISGYCEQ D+HSP LTV ESLLFSAWLRL S+++LETQ+AFVEEVMELV
Sbjct: 900 GYPKRQDSFARISGYCEQTDVHSPCLTVWESLLFSAWLRLSSDVDLETQKAFVEEVMELV 959
Query: 952 ELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTV 1011
ELT LSGAL+GLPGI+GLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTV
Sbjct: 960 ELTPLSGALVGLPGIDGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTV 1019
Query: 1012 RNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGSKSCELIKYFE 1066
RNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG KSCELI YFE
Sbjct: 1020 RNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGPKSCELISYFE 1074
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356563077|ref|XP_003549792.1| PREDICTED: ABC transporter G family member 32-like isoform 2 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1793 bits (4645), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 887/1075 (82%), Positives = 977/1075 (90%), Gaps = 10/1075 (0%)
Query: 1 MWNSAENVFSRTSSFRDEVEDEEALRWAALERLPTYARARRGIFKNVVGDVKEVDVSELA 60
MWNSAEN F+R+SSFR+E EDEEALRWAALERLPTY RARRGIFKNV+GD+KE+DV +L
Sbjct: 1 MWNSAENAFARSSSFREETEDEEALRWAALERLPTYKRARRGIFKNVIGDIKEIDVRDLQ 60
Query: 61 VQEQRLVLDRLVNAVEDDPERFFDRMRKRCEAVDLELPKIEVRFQNLTVESFVHLGSRAL 120
QEQRL+L+RLV+ V++DPERFF RMR R +AV L PKIEVRFQ+LTVE++VH+GSRAL
Sbjct: 61 AQEQRLLLERLVDCVDNDPERFFQRMRSRFDAVGLHFPKIEVRFQDLTVETYVHVGSRAL 120
Query: 121 PTIPNFIFNMTEALLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLA 180
PTIPNFI NMTEALLRQLR+YR RSKLTIL D+SGII+PSRLTLLLGPPSSGKTTLLLA
Sbjct: 121 PTIPNFICNMTEALLRQLRMYRRKRSKLTILADISGIIKPSRLTLLLGPPSSGKTTLLLA 180
Query: 181 LAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVG 240
LAGRLG LQ+SG ITYNGH KEFVP RTSAYVSQQD VAEMTVRETL FAG+CQGVG
Sbjct: 181 LAGRLGPGLQMSGNITYNGHSLKEFVPQRTSAYVSQQDRHVAEMTVRETLQFAGRCQGVG 240
Query: 241 SKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVG 300
K+DM+ ELARREK AGIKPDEDLD+FMKS ALGGQ+T+LVVEYIMKILGLD C DTLVG
Sbjct: 241 FKFDMLLELARREKNAGIKPDEDLDLFMKSLALGGQETNLVVEYIMKILGLDICGDTLVG 300
Query: 301 DEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTT 360
DEMLKGISGGQKKRLTTGELL+GPARVLFMDEIS GLDSSTTYQII+YLKHSTRALDGTT
Sbjct: 301 DEMLKGISGGQKKRLTTGELLIGPARVLFMDEISTGLDSSTTYQIIRYLKHSTRALDGTT 360
Query: 361 VISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVT 420
++SLLQPAPE YELFDDVILL EGQIVYQGPR + +DFF MGFSCP+RKNVADFLQEVT
Sbjct: 361 IVSLLQPAPETYELFDDVILLCEGQIVYQGPREAAVDFFKQMGFSCPERKNVADFLQEVT 420
Query: 421 SKKDQEQYWSNPYLPYRYISPGKFAEAFHSYHTGKNLSEELAVPFDRRFNHPAALSTSKY 480
SKKDQEQYWS P PYRY+ GKFAEAF Y G+ LSE+L +PFDRR+NHPAAL+T Y
Sbjct: 421 SKKDQEQYWSVPDRPYRYVPVGKFAEAFSLYREGRILSEQLNLPFDRRYNHPAALATVSY 480
Query: 481 GEKRSELLKTSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHKTIDDGGLY 540
G KR ELLKT++ WQ LLMKRNSFIYVFKF+QLL+VALITM+VFFRTTMHH TIDDGGLY
Sbjct: 481 GAKRLELLKTNYQWQKLLMKRNSFIYVFKFVQLLLVALITMSVFFRTTMHHNTIDDGGLY 540
Query: 541 LGALYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIPTSLIESG 600
LGALYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSW YT+PSW LSIPTSLIE+G
Sbjct: 541 LGALYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWAYTLPSWFLSIPTSLIEAG 600
Query: 601 FWVAVTYYVIGYDPNVVRFSRQLLLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSFAMLV 660
WV V+YY GYDP RF RQ LL+FFLHQMSIGLFR+IGSLGRNMIV+NTFGSFAMLV
Sbjct: 601 CWVTVSYYASGYDPAFTRFLRQFLLFFFLHQMSIGLFRLIGSLGRNMIVSNTFGSFAMLV 660
Query: 661 VMALGGFIISRDSIPKWWIWGFWVSPLMYAQNAASVNEFLGHSWDKKAGN-SNFSLGEAI 719
VMALGG+IISRD IP WWIWGFW+SPLMYAQN+ASVNEFLGHSWDKKAGN + +SLGEA+
Sbjct: 661 VMALGGYIISRDRIPVWWIWGFWISPLMYAQNSASVNEFLGHSWDKKAGNQTTYSLGEAV 720
Query: 720 LRQRSLFPESYWYWIGVGAMLGYTLLFNALFTFFLSYLNPLGKQQAVVSKKELQERDRRR 779
L++RSL+ E+YWYWIG+GAM+GYT+LFN LFT FL+YLNPLG+QQAVVSK ELQER++RR
Sbjct: 721 LKERSLYAENYWYWIGLGAMVGYTILFNILFTIFLAYLNPLGRQQAVVSKDELQEREKRR 780
Query: 780 KGENVVIELREYLQRSSSLNGKYFKQKGMVLPFQPLSMAFGNINYFVDVPVEL------- 832
KGE+VVIELREYLQRS+S +GK+FKQ+GMVLPFQPLSMAF NINY+VDVP+
Sbjct: 781 KGESVVIELREYLQRSAS-SGKHFKQRGMVLPFQPLSMAFSNINYYVDVPLYFIQLLLQE 839
Query: 833 -KQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYIS 891
KQ+G++ED+LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGG+IEG +YIS
Sbjct: 840 LKQQGIVEDKLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGVIEGSVYIS 899
Query: 892 GYPKRQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELV 951
GYPKRQ++FARISGYCEQ D+HSP LTV ESLLFSAWLRL S+++ ETQ+AFVEEVMELV
Sbjct: 900 GYPKRQDSFARISGYCEQTDVHSPCLTVWESLLFSAWLRLSSDVDFETQKAFVEEVMELV 959
Query: 952 ELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTV 1011
ELT LSGAL+GLPGI+GLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTV
Sbjct: 960 ELTPLSGALVGLPGIDGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTV 1019
Query: 1012 RNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGSKSCELIKYFE 1066
RNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG KS ELI YFE
Sbjct: 1020 RNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGPKSSELISYFE 1074
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1085 | ||||||
| TAIR|locus:2039523 | 1420 | ABCG32 "ATP-binding cassette G | 0.982 | 0.750 | 0.786 | 0.0 | |
| TAIR|locus:2196593 | 1423 | ABCG40 "ATP-binding cassette G | 0.968 | 0.738 | 0.583 | 0.0 | |
| TAIR|locus:2044893 | 1453 | ABCG34 "ATP-binding cassette G | 0.967 | 0.722 | 0.576 | 0.0 | |
| TAIR|locus:2019693 | 1454 | ABCG39 "ATP-binding cassette G | 0.968 | 0.722 | 0.567 | 0.0 | |
| TAIR|locus:2094952 | 1416 | ABCG29 "ATP-binding cassette G | 0.963 | 0.737 | 0.565 | 0.0 | |
| TAIR|locus:2037703 | 1442 | ABCG35 "ATP-binding cassette G | 0.966 | 0.727 | 0.553 | 0.0 | |
| TAIR|locus:2025931 | 1469 | PEN3 "PENETRATION 3" [Arabidop | 0.976 | 0.720 | 0.549 | 0.0 | |
| TAIR|locus:2045683 | 1426 | ABCG31 "ATP-binding cassette G | 0.699 | 0.532 | 0.452 | 4.3e-290 | |
| TAIR|locus:2049867 | 1413 | ABCG33 "ATP-binding cassette G | 0.964 | 0.740 | 0.5 | 4.7e-277 | |
| TAIR|locus:2084081 | 1450 | ABCG37 "ATP-binding cassette G | 0.956 | 0.715 | 0.493 | 1.6e-276 |
| TAIR|locus:2039523 ABCG32 "ATP-binding cassette G32" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 4434 (1565.9 bits), Expect = 0., P = 0.
Identities = 839/1067 (78%), Positives = 946/1067 (88%)
Query: 1 MWNSAENVFSRTSSFRDEVEDEEALRWAALERLPTYARARRGIFKNVVGDVKEVDVSELA 60
MWNSAEN FSR++SF+DE+EDEE LRWAAL+RLPTY+R RRGIF+++VG+ KE+ + L
Sbjct: 1 MWNSAENAFSRSTSFKDEIEDEEELRWAALQRLPTYSRIRRGIFRDMVGEPKEIQIGNLE 60
Query: 61 VQEQRLVLDRLVNAVEDDPERFFDRMRKRCEAVDLELPKIEVRFQNLTVESFVHLGSRAL 120
EQRL+LDRLVN+VE+DPE+FF R+RKR +AVDL+ PKIEVRFQNL VESFVH+GSRAL
Sbjct: 61 ASEQRLLLDRLVNSVENDPEQFFARVRKRFDAVDLKFPKIEVRFQNLMVESFVHVGSRAL 120
Query: 121 PTIPNFIFNMTEALLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKXXXXXX 180
PTIPNFI NM E LLR + + G R+KLTILD +SG+IRPSRLTLLLGPPSSGK
Sbjct: 121 PTIPNFIINMAEGLLRNIHVIGGKRNKLTILDGISGVIRPSRLTLLLGPPSSGKTTLLLA 180
Query: 181 XXXXXXXXXQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVG 240
Q SGKITYNG+ KE + PRTSAYVSQQDW VAEMTVR+TL+FAG+CQGVG
Sbjct: 181 LAGRLGTNLQTSGKITYNGYDLKEIIAPRTSAYVSQQDWHVAEMTVRQTLEFAGRCQGVG 240
Query: 241 SKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVG 300
KYDM+ ELARREK+AGI PDEDLDIFMKS ALGG +TSLVVEY+MKILGLDTCADTLVG
Sbjct: 241 FKYDMLLELARREKLAGIVPDEDLDIFMKSLALGGMETSLVVEYVMKILGLDTCADTLVG 300
Query: 301 DEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTT 360
DEM+KGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTT+QII Y++HST AL+GTT
Sbjct: 301 DEMIKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTHQIIMYMRHSTHALEGTT 360
Query: 361 VISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVT 420
VISLLQP+PE YELFDDVIL+SEGQI+YQGPR VLDFF+S+GF+CP RKNVADFLQEVT
Sbjct: 361 VISLLQPSPETYELFDDVILMSEGQIIYQGPRDEVLDFFSSLGFTCPDRKNVADFLQEVT 420
Query: 421 SKKDQEQYWSNPYLPYRYISPGKFAEAFHSYHTGKNLSEELAVPFDRRFNHPAALSTSKY 480
SKKDQ+QYWS P+ PYRY+ PGKFAEAF SY TGK L+++L VPFD+RFNH AALSTS+Y
Sbjct: 421 SKKDQQQYWSVPFRPYRYVPPGKFAEAFRSYPTGKKLAKKLEVPFDKRFNHSAALSTSQY 480
Query: 481 GEKRSELLKTSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHKTIDDGGLY 540
G K+SELLK +F WQ LMK+N+FIYVFKF+QLL+VALITMTVF RTTMHH TIDDG +Y
Sbjct: 481 GVKKSELLKINFAWQKQLMKQNAFIYVFKFVQLLLVALITMTVFCRTTMHHNTIDDGNIY 540
Query: 541 LGALYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIPTSLIESG 600
LG+LYFSMVIILFNGFTEV MLVAKLPVLYKHRDLHFYPSW YT+PSW LSIPTS+IES
Sbjct: 541 LGSLYFSMVIILFNGFTEVPMLVAKLPVLYKHRDLHFYPSWAYTLPSWLLSIPTSIIESA 600
Query: 601 FWVAVTYYVIGYDPNVVRFSRQLLLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSFAMLV 660
WVAVTYY IGYDP RF +Q LLYF LHQMS+GLFRV+GSLGR+MIVANTFGSFAMLV
Sbjct: 601 TWVAVTYYTIGYDPLFSRFLQQFLLYFSLHQMSLGLFRVMGSLGRHMIVANTFGSFAMLV 660
Query: 661 VMALGGFIISRDSIPKWWIWGFWVSPLMYAQNAASVNEFLGHSWDKKAGN-SNFSLGEAI 719
VM LGGFIISRDSIP WWIWG+W+SPLMYAQNAASVNEFLGH+W K AGN ++ SLG A+
Sbjct: 661 VMTLGGFIISRDSIPSWWIWGYWISPLMYAQNAASVNEFLGHNWQKTAGNHTSDSLGLAL 720
Query: 720 LRQRSLFPESYWYWIGVGAMLGYXXXXXXXXXXXXSYLNPLGKQQAVVSKKELQERDRRR 779
L++RSLF +YWYWIGV A+LGY ++LNP GK QAVVS++EL ER+++R
Sbjct: 721 LKERSLFSGNYWYWIGVAALLGYTVLFNILFTLFLAHLNPWGKFQAVVSREELDEREKKR 780
Query: 780 KGENVVIELREYLQRSSSLNGKYFKQKGMVLPFQPLSMAFGNINYFVDVPVELKQEGVLE 839
KG+ V+ELREYLQ S S++GKYFK +GMVLPFQPLS++F NINY+VDVP+ LK++G+LE
Sbjct: 781 KGDEFVVELREYLQHSGSIHGKYFKNRGMVLPFQPLSLSFSNINYYVDVPLGLKEQGILE 840
Query: 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQET 899
DRLQLLVN+TGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGG IEGD+YISG+PKRQET
Sbjct: 841 DRLQLLVNITGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGTIEGDVYISGFPKRQET 900
Query: 900 FARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGA 959
FARISGYCEQND+HSP LTV+ESLLFSA LRLP++I+ ETQRAFV EVMELVELTSLSGA
Sbjct: 901 FARISGYCEQNDVHSPCLTVVESLLFSACLRLPADIDSETQRAFVHEVMELVELTSLSGA 960
Query: 960 LIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGR 1019
L+GLPG++GLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGR
Sbjct: 961 LVGLPGVDGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGR 1020
Query: 1020 TIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGSKSCELIKYFE 1066
TIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG KSCELIKYFE
Sbjct: 1021 TIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGQKSCELIKYFE 1067
|
|
| TAIR|locus:2196593 ABCG40 "ATP-binding cassette G40" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3303 (1167.8 bits), Expect = 0., P = 0.
Identities = 625/1071 (58%), Positives = 803/1071 (74%)
Query: 1 MW--NSAENVFSRTSSFRDEVEDEEALRWAALERLPTYARARRGIF--KNVVGDVKEVDV 56
+W +S +FSR+S R+E +DEEALRWAALE+LPT+ R R+GI + G + E+D+
Sbjct: 19 VWKKDSGREIFSRSS--REE-DDEEALRWAALEKLPTFDRLRKGILTASHAGGPINEIDI 75
Query: 57 SELAVQEQRLVLDRLVNAVEDDPERFFDRMRKRCEAVDLELPKIEVRFQNLTVESFVHLG 116
+L Q+ + +L+RL+ +D+ E+ +++KR + V ++LP IEVRF +L VE+ VH+G
Sbjct: 76 QKLGFQDTKKLLERLIKVGDDEHEKLLWKLKKRIDRVGIDLPTIEVRFDHLKVEAEVHVG 135
Query: 117 SRALPTIPNFIFNMTEALLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKXX 176
RALPT NFI N + L L + + K TIL+D+SGI++P R+ LLLGPPSSGK
Sbjct: 136 GRALPTFVNFISNFADKFLNTLHLVPNRKKKFTILNDVSGIVKPGRMALLLGPPSSGKTT 195
Query: 177 XXXXXXXXXXXXXQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQC 236
+ +G++TYNGHG EFVP RT+AY+ Q D + EMTVRET +A +
Sbjct: 196 LLLALAGKLDQELKQTGRVTYNGHGMNEFVPQRTAAYIGQNDVHIGEMTVRETFAYAARF 255
Query: 237 QGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCAD 296
QGVGS+YDM+TELARREK A IKPD D+DIFMK+ + G+KT+++ +YI+KILGL+ CAD
Sbjct: 256 QGVGSRYDMLTELARREKEANIKPDPDIDIFMKAMSTAGEKTNVMTDYILKILGLEVCAD 315
Query: 297 TLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRAL 356
T+VGD+ML+GISGGQKKR+TTGE+LVGP+R LFMDEIS GLDSSTTYQI+ L++
Sbjct: 316 TMVGDDMLRGISGGQKKRVTTGEMLVGPSRALFMDEISTGLDSSTTYQIVNSLRNYVHIF 375
Query: 357 DGTTVISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFL 416
+GT +ISLLQPAPE + LFDD+IL++EG+I+Y+GPR V++FF +MGF CP RK VADFL
Sbjct: 376 NGTALISLLQPAPETFNLFDDIILIAEGEIIYEGPRDHVVEFFETMGFKCPPRKGVADFL 435
Query: 417 QEVTSKKDQEQYWSNPYLPYRYISPGKFAEAFHSYHTGKNLSEELAVPFDRRFNHPAALS 476
QEVTSKKDQ QYW+ PYR+I +FAEAF S+H G+ + +ELA+PFD+ +HPAAL+
Sbjct: 436 QEVTSKKDQMQYWARRDEPYRFIRVREFAEAFQSFHVGRRIGDELALPFDKTKSHPAALT 495
Query: 477 TSKYGEKRSELLKTSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHKTIDD 536
T KYG EL+KTSF+ + LLMKRNSF+Y FKF QLL++A +TMT+FFRT M KT D
Sbjct: 496 TKKYGVGIKELVKTSFSREYLLMKRNSFVYYFKFGQLLVMAFLTMTLFFRTEMQKKTEVD 555
Query: 537 GGLYLGALYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIPTSL 596
G LY GAL+F +++++FNG +E+SM +AKLPV YK RDL FYP+WVY++P W L IP S
Sbjct: 556 GSLYTGALFFILMMLMFNGMSELSMTIAKLPVFYKQRDLLFYPAWVYSLPPWLLKIPISF 615
Query: 597 IESGFWVAVTYYVIGYDPNVVRFSRQLLLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSF 656
+E+ +TYYVIG+DPNV R +Q +L ++QM+ LF+++ +LGRNMIVANTFG+F
Sbjct: 616 MEAALTTFITYYVIGFDPNVGRLFKQYILLVLMNQMASALFKMVAALGRNMIVANTFGAF 675
Query: 657 AMLVVMALGGFIISRDSIPKWWIWGFWVSPLMYAQNAASVNEFLGHSWDKKAGNSNFSLG 716
AMLV ALGG ++SRD I KWWIWG+W+SP+MY QNA NEF GHSW + NS+ +LG
Sbjct: 676 AMLVFFALGGVVLSRDDIKKWWIWGYWISPIMYGQNAILANEFFGHSWSRAVENSSETLG 735
Query: 717 EAILRQRSLFPESYWYWIGVGAMLGYXXXXXXXXXXXXSYLNPLGKQQAVVSKKELQERD 776
L+ R P +YWYWIG GA+LG+ ++LN LGK QAV++++ +
Sbjct: 736 VTFLKSRGFLPHAYWYWIGTGALLGFVVLFNFGFTLALTFLNSLGKPQAVIAEEPASDET 795
Query: 777 RRRKGENV-VIELREYLQRSSSLNGKYFKQKGMVLPFQPLSMAFGNINYFVDVPVELKQE 835
+ + V+E + N K++GMVLPF+P S+ F N+ Y VD+P E+ ++
Sbjct: 796 ELQSARSEGVVE--------AGAN----KKRGMVLPFEPHSITFDNVVYSVDMPQEMIEQ 843
Query: 836 GVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPK 895
G EDRL LL V GAFRPGVLTAL+GVSGAGKTTLMDVLAGRKTGG I+G+I ISGYPK
Sbjct: 844 GTQEDRLVLLKGVNGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIDGNITISGYPK 903
Query: 896 RQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTS 955
Q+TFARISGYCEQ DIHSP +TV ESL++SAWLRLP E++ ++ F+EEVMELVELT
Sbjct: 904 NQQTFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPKEVDKNKRKIFIEEVMELVELTP 963
Query: 956 LSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIV 1015
L AL+GLPG +GLSTEQRKRLTIAVELVANPSI+FMDEPTSGLDARAAAIVMRTVRN V
Sbjct: 964 LRQALVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1023
Query: 1016 NTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGSKSCELIKYFE 1066
+TGRT+VCTIHQPSIDIFE+FDEL +KRGGE IY GPLG +S LI YFE
Sbjct: 1024 DTGRTVVCTIHQPSIDIFEAFDELFLLKRGGEEIYVGPLGHESTHLINYFE 1074
|
|
| TAIR|locus:2044893 ABCG34 "ATP-binding cassette G34" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3190 (1128.0 bits), Expect = 0., P = 0.
Identities = 617/1070 (57%), Positives = 792/1070 (74%)
Query: 6 ENVFSRTSSFRDEVEDEEALRWAALERLPTYARARRGIFKNVV--GDV--KEVDVSELAV 61
++VF R+ R E ED+ LRWAALERLPTY R R+G+ + G + ++VDV+ LA
Sbjct: 43 DDVFGRSD--RRE-EDDVELRWAALERLPTYDRLRKGMLPQTMVNGKIGLEDVDVTNLAP 99
Query: 62 QEQRLVLDRLVNAVEDDPERFFDRMRKRCEAVDLELPKIEVRFQNLTVESFVHLGSRALP 121
+E++ +++ ++ VE+D E+F R+R+R + V +E+PKIEVR++NL+VE V SRALP
Sbjct: 100 KEKKHLMEMILKFVEEDNEKFLRRLRERTDRVGIEVPKIEVRYENLSVEGDVRSASRALP 159
Query: 122 TIPNFIFNMTEALLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKXXXXXXX 181
T+ N N E++L + + K+ IL D+SGII+PSR+TLLLGPPSSGK
Sbjct: 160 TLFNVTLNTIESILGLFHLLPSKKRKIEILKDISGIIKPSRMTLLLGPPSSGKTTLLQAL 219
Query: 182 XXXXXXXXQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGS 241
Q+SG+ITY GH F+EFVP +T AY+SQ D EMTVRE+LDF+G+C GVG+
Sbjct: 220 AGKLDDTLQMSGRITYCGHEFREFVPQKTCAYISQHDLHFGEMTVRESLDFSGRCLGVGT 279
Query: 242 KYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGD 301
+Y ++TEL+RRE+ AGIKPD ++D FMKS A+ GQ+TSLV +Y++K+LGLD CADTLVGD
Sbjct: 280 RYQLLTELSRREREAGIKPDPEIDAFMKSIAISGQETSLVTDYVLKLLGLDICADTLVGD 339
Query: 302 EMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTV 361
M +GISGGQ+KRLTTGE+LVGPA LFMDEIS GLDSSTT+QI K+++ D T V
Sbjct: 340 VMRRGISGGQRKRLTTGEMLVGPATALFMDEISTGLDSSTTFQICKFMRQLVHIADVTMV 399
Query: 362 ISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVTS 421
ISLLQPAPE +ELFDD+ILLSEGQIVYQG R +VL+FF MGF CP+RK +ADFLQEVTS
Sbjct: 400 ISLLQPAPETFELFDDIILLSEGQIVYQGSRDNVLEFFEYMGFKCPERKGIADFLQEVTS 459
Query: 422 KKDQEQYWSNPYLPYRYISPGKFAEAFHSYHTGKNLSEELAVPFDRRFNHPAALSTSKYG 481
KKDQEQYW+ PY Y+S F+ F+S+H G+ L+ E VP+D+ HPAAL T KYG
Sbjct: 460 KKDQEQYWNRREHPYSYVSVHDFSSGFNSFHAGQQLASEFRVPYDKAKTHPAALVTQKYG 519
Query: 482 EKRSELLKTSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHKTIDDGGLYL 541
+L K F+ + LLMKRNSF+YVFK +Q+ I++LI MTV+FRT MH T+ DG +
Sbjct: 520 ISNKDLFKACFDREWLLMKRNSFVYVFKTVQITIMSLIAMTVYFRTEMHVGTVQDGQKFY 579
Query: 542 GALYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIPTSLIESGF 601
GAL+FS++ ++FNG E++ V +LPV +K RD FYP W + +P + L IP SLIES
Sbjct: 580 GALFFSLINLMFNGMAELAFTVMRLPVFFKQRDFLFYPPWAFALPGFLLKIPLSLIESVI 639
Query: 602 WVAVTYYVIGYDPNVVRFSRQLLLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSFAMLVV 661
W+A+TYY IG+ P+ RF RQLL YF ++QM++ LFR +G+LGR ++AN+ G+ A+LVV
Sbjct: 640 WIALTYYTIGFAPSAARFFRQLLAYFCVNQMALSLFRFLGALGRTEVIANSGGTLALLVV 699
Query: 662 MALGGFIISRDSIPKWWIWGFWVSPLMYAQNAASVNEFLGHSWDKKAGNSNFS---LGEA 718
LGGFIIS+D IP W W ++ SP+MY Q A +NEFL W ++ + +GE
Sbjct: 700 FVLGGFIISKDDIPSWLTWCYYTSPMMYGQTALVINEFLDERWGSPNNDTRINAKTVGEV 759
Query: 719 ILRQRSLFPESYWYWIGVGAMLGYXXXXXXXXXXXXSYLNPLGKQQAVVSKKELQERDR- 777
+L+ R F E YW+WI +GA+LG+ YLNPLG +A +E +++ +
Sbjct: 760 LLKSRGFFTEPYWFWICIGALLGFTVLFNFCYIIALMYLNPLGNSKATTVVEEGKDKHKG 819
Query: 778 RRKGEN-VVIELREYLQRSSSLNGKYFKQKGMVLPFQPLSMAFGNINYFVDVPVELKQEG 836
G V+EL S+S +G +KGMVLPFQPLS+AF N+NY+VD+P E+K +G
Sbjct: 820 SHSGTGGSVVELT-----STSSHGP---KKGMVLPFQPLSLAFNNVNYYVDMPAEMKAQG 871
Query: 837 VLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKR 896
V DRLQLL +V GAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGG +EG I ISGYPK
Sbjct: 872 VEGDRLQLLRDVGGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYVEGSINISGYPKN 931
Query: 897 QETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSL 956
Q TFAR+SGYCEQNDIHSP +TV ESL++SAWLRL ++I+ +T+ FVEEVMELVEL L
Sbjct: 932 QATFARVSGYCEQNDIHSPHVTVYESLIYSAWLRLSADIDTKTREMFVEEVMELVELKPL 991
Query: 957 SGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVN 1016
+++GLPG++GLSTEQRKRLTIAVELVANPSI+FMDEPTSGLDARAAAIVMRTVRN V+
Sbjct: 992 RNSIVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1051
Query: 1017 TGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGSKSCELIKYFE 1066
TGRT+VCTIHQPSIDIFESFDELL MKRGG++IYAG LG S +L++YFE
Sbjct: 1052 TGRTVVCTIHQPSIDIFESFDELLLMKRGGQVIYAGTLGHHSQKLVEYFE 1101
|
|
| TAIR|locus:2019693 ABCG39 "ATP-binding cassette G39" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3164 (1118.8 bits), Expect = 0., P = 0.
Identities = 606/1068 (56%), Positives = 784/1068 (73%)
Query: 6 ENVFSRTSSFRDEVEDEEALRWAALERLPTYARARRGIFKNVVG----DVKEVDVSELAV 61
+ VF R+ R E ED+ LRWAA+ERLPT+ R R+G+ +++++D++ L
Sbjct: 45 DEVFGRSE--RRE-EDDMELRWAAIERLPTFDRLRKGMLPQTSANGKIELEDIDLTRLEP 101
Query: 62 QEQRLVLDRLVNAVEDDPERFFDRMRKRCEAVDLELPKIEVRFQNLTVESFVHLGSRALP 121
++++ +++ +++ VE+D E+F +R+R + V +E+PKIEVR++N++VE V SRALP
Sbjct: 102 KDKKHLMEMILSFVEEDNEKFLRDLRERTDRVGIEVPKIEVRYENISVEGDVRSASRALP 161
Query: 122 TIPNFIFNMTEALLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKXXXXXXX 181
T+ N N E++L + R K+ IL D+SGI++PSR+TLLLGPPSSGK
Sbjct: 162 TLFNVTLNTLESILGFFHLLPSKRKKIQILKDISGIVKPSRMTLLLGPPSSGKTTLLQAL 221
Query: 182 XXXXXXXXQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGS 241
Q+SG+ITY GH F+EFVP +T AY+SQ D EMTVRE LDF+G+C GVGS
Sbjct: 222 AGKLDDTLQMSGRITYCGHEFREFVPQKTCAYISQHDLHFGEMTVREILDFSGRCLGVGS 281
Query: 242 KYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGD 301
+Y +++EL+RREK GIKPD +D FMKS A+ GQ+TSLV +Y++KILGLD CAD L GD
Sbjct: 282 RYQLMSELSRREKEEGIKPDPKIDAFMKSIAISGQETSLVTDYVLKILGLDICADILAGD 341
Query: 302 EMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTV 361
M +GISGGQKKRLTTGE+LVGPAR LFMDEIS GLDSSTT+QI K+++ D T +
Sbjct: 342 VMRRGISGGQKKRLTTGEMLVGPARALFMDEISTGLDSSTTFQICKFMRQLVHISDVTMI 401
Query: 362 ISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVTS 421
ISLLQPAPE +ELFDD+ILLSEGQIVYQGPR +VL+FF GF CP+RK VADFLQEVTS
Sbjct: 402 ISLLQPAPETFELFDDIILLSEGQIVYQGPRDNVLEFFEYFGFQCPERKGVADFLQEVTS 461
Query: 422 KKDQEQYWSNPYLPYRYISPGKFAEAFHSYHTGKNLSEELAVPFDRRFNHPAALSTSKYG 481
KKDQEQYW+ PY Y+S F+ F ++HTG+ L+ E VP+D+ H AAL T KYG
Sbjct: 462 KKDQEQYWNKREQPYNYVSVSDFSSGFSTFHTGQKLTSEFRVPYDKAKTHSAALVTQKYG 521
Query: 482 EKRSELLKTSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHKTIDDGGLYL 541
EL K F+ + LLMKRNSF+YVFK +Q+ I++LITMTV+ RT MH T+ DG +
Sbjct: 522 ISNWELFKACFDREWLLMKRNSFVYVFKTVQITIMSLITMTVYLRTEMHVGTVRDGQKFY 581
Query: 542 GALYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIPTSLIESGF 601
GA++FS++ ++FNG E++ V +LPV YK RD FYP W + +P+W L IP SLIESG
Sbjct: 582 GAMFFSLINVMFNGLAELAFTVMRLPVFYKQRDFLFYPPWAFALPAWLLKIPLSLIESGI 641
Query: 602 WVAVTYYVIGYDPNVVRFSRQLLLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSFAMLVV 661
W+ +TYY IG+ P+ RF RQLL YF ++QM++ LFR +G++GR +++N+ G+F +L+V
Sbjct: 642 WIGLTYYTIGFAPSAARFFRQLLAYFCVNQMALSLFRFLGAIGRTEVISNSIGTFTLLIV 701
Query: 662 MALGGFIISRDSIPKWWIWGFWVSPLMYAQNAASVNEFLGHSWDKKAGNSNFS---LGEA 718
LGGFII++D I W W +++SP+MY Q A +NEFL W ++ + +GE
Sbjct: 702 FTLGGFIIAKDDIRPWMTWAYYMSPMMYGQTAIVMNEFLDERWSSPNYDTRINAKTVGEV 761
Query: 719 ILRQRSLFPESYWYWIGVGAMLGYXXXXXXXXXXXXSYLNPLGKQQAVVSKKELQERDRR 778
+L+ R F E YW+WI + A+LG+ YLNPLG +A V ++E +
Sbjct: 762 LLKSRGFFTEPYWFWICIVALLGFSLLFNLFYILALMYLNPLGNSKATV----VEEGKDK 817
Query: 779 RKGENVVIELREYLQRSSSLNGKYFKQKGMVLPFQPLSMAFGNINYFVDVPVELKQEGVL 838
+KGEN E SSS G ++GMVLPFQPLS+AF N+NY+VD+P E+K +GV
Sbjct: 818 QKGENRGTEGSVVELNSSSNKGP---KRGMVLPFQPLSLAFNNVNYYVDMPSEMKAQGVE 874
Query: 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE 898
DRLQLL +V GAFRPG+LTALVGVSGAGKTTLMDVLAGRKTGG IEG I ISGYPK Q
Sbjct: 875 GDRLQLLRDVGGAFRPGILTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKNQT 934
Query: 899 TFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSG 958
TFAR+SGYCEQNDIHSP +TV ESL++SAWLRL ++I+++T+ FVEEVMELVEL L
Sbjct: 935 TFARVSGYCEQNDIHSPHVTVYESLIYSAWLRLSTDIDIKTRELFVEEVMELVELKPLRN 994
Query: 959 ALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTG 1018
+++GLPG++GLSTEQRKRLTIAVELVANPSI+FMDEPTSGLDARAAAIVMRTVRN V+TG
Sbjct: 995 SIVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1054
Query: 1019 RTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGSKSCELIKYFE 1066
RT+VCTIHQPSIDIFESFDELL MKRGG++IYAG LG S +L++YFE
Sbjct: 1055 RTVVCTIHQPSIDIFESFDELLLMKRGGQVIYAGSLGHHSQKLVEYFE 1102
|
|
| TAIR|locus:2094952 ABCG29 "ATP-binding cassette G29" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3136 (1109.0 bits), Expect = 0., P = 0.
Identities = 602/1065 (56%), Positives = 792/1065 (74%)
Query: 3 NSAENVFSRTSSFRDEVEDEEALRWAALERLPTYARARRGIFKNVVGDVKEVDVSELAVQ 62
+++ N FSR S + DEEAL+WAALE+LPT+AR R I + D+ VDV++L V
Sbjct: 18 SNSNNHFSRRSGSTIDDHDEEALKWAALEKLPTFARLRTTII-HPHEDL--VDVTKLGVD 74
Query: 63 EQRLVLDRLVNAVEDDPERFFDRMRKRCEAVDLELPKIEVRFQNLTVESFVHLGSRALPT 122
+++ +D + E+D E+F + R R + V ++LP +EVRF+ +T+E+ H+G RALPT
Sbjct: 75 DRQKFIDSIFKVTEEDNEKFLKKFRNRIDRVRIKLPTVEVRFEKVTIEANCHIGKRALPT 134
Query: 123 IPNFIFNMTEALLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKXXXXXXXX 182
+PN N+ E LR L +K+TIL D+SGII+PSR+TLLLGPPSSGK
Sbjct: 135 LPNAALNIAERGLRLLGFNFTKTTKVTILRDVSGIIKPSRMTLLLGPPSSGKTTLLLALA 194
Query: 183 XXXXXXXQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSK 242
+V+G++TYNGHG +EFVP +TSAY+SQ D V MTV+ETLDF+ +CQGVG++
Sbjct: 195 GKLDQSLKVTGRVTYNGHGLEEFVPQKTSAYISQNDVHVGVMTVQETLDFSARCQGVGTR 254
Query: 243 YDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDE 302
YD+++EL RREK AGI P+ ++D+FMKS A G K+SL+ +Y ++ILGLD C DT+VGDE
Sbjct: 255 YDLLSELVRREKDAGILPEPEVDLFMKSIAAGNVKSSLITDYTLRILGLDICKDTVVGDE 314
Query: 303 MLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVI 362
M++GISGGQKKR+TTGE++VGP + LFMDEIS GLDSSTTYQI+K L+ R D T ++
Sbjct: 315 MIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQEIVRFTDATVLM 374
Query: 363 SLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVTSK 422
SLLQPAPE +ELFDD+ILLSEGQIVYQGPR VL FF + GF CP RK ADFLQEVTS+
Sbjct: 375 SLLQPAPETFELFDDIILLSEGQIVYQGPRDHVLTFFETCGFKCPDRKGTADFLQEVTSR 434
Query: 423 KDQEQYWSNPYLPYRYISPGKFAEAFHSYHTGKNLSEELAVPFDRRFNHPAALSTSKYGE 482
KDQEQYW++ PY YIS +F++ F ++H G NL ++L+VP+DR +HPA+L K+
Sbjct: 435 KDQEQYWADSKKPYSYISVSEFSKRFRTFHVGANLEKDLSVPYDRFKSHPASLVFKKHSV 494
Query: 483 KRSELLKTSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHKTIDDGGLYLG 542
+S+L K ++ +LLLMKRN+F Y+ K +Q++I+ALI TV+ RT M K DG +Y+G
Sbjct: 495 PKSQLFKVCWDRELLLMKRNAFFYITKTVQIIIMALIASTVYLRTEMGTKNESDGAVYIG 554
Query: 543 ALYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIPTSLIESGFW 602
AL FSM++ +FNGF E+++++ +LPV YK RDL F+P W +++P++ L IP S+ ES W
Sbjct: 555 ALMFSMIVNMFNGFAELALMIQRLPVFYKQRDLLFHPPWTFSLPTFLLGIPISIFESVVW 614
Query: 603 VAVTYYVIGYDPNVVRFSRQLLLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSFAMLVVM 662
V +TYY+IG+ P + RF + LL+ F QM+ G+FR I + R+MI+ANT G+ +L++
Sbjct: 615 VTITYYMIGFAPELSRFLKHLLVIFLTQQMAGGIFRFIAATCRSMILANTGGALVILLLF 674
Query: 663 ALGGFIISRDSIPKWWIWGFWVSPLMYAQNAASVNEFLGHSW-DKKAGNSNFSLGEAILR 721
LGGFI+ R IPKWW W +WVSP+ Y +A +VNE L W ++ + +++ SLG A+L
Sbjct: 675 LLGGFIVPRGEIPKWWKWAYWVSPMAYTYDALTVNEMLAPRWINQPSSDNSTSLGLAVLE 734
Query: 722 QRSLFPESYWYWIGVGAMLGYXXXXXXXXXXXXSYLNPLGKQQAVVSKKELQERDRRRKG 781
+F + WYWIGVG +LG+ ++LNPL KQQAVVSK+ +E +R G
Sbjct: 735 IFDIFTDPNWYWIGVGGILGFTVLFNILVTLALTFLNPLEKQQAVVSKENTEE-NRAENG 793
Query: 782 ENVVIELREYLQRSSSLNGKYFKQKGMVLPFQPLSMAFGNINYFVDVPVELKQEGVLEDR 841
+S S++ K +GMVLPF PL+M+F N+NY+VD+P E+K++GV +D+
Sbjct: 794 S-----------KSKSIDVK----RGMVLPFTPLTMSFDNVNYYVDMPKEMKEQGVSKDK 838
Query: 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFA 901
LQLL VTG FRPGVLTAL+GVSGAGKTTLMDVLAGRKTGG IEGDI ISG+PKRQETFA
Sbjct: 839 LQLLKEVTGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKRQETFA 898
Query: 902 RISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALI 961
RISGYCEQNDIHSP +TV ESL++SA+LRLP E+ + FV+EVMELVEL SL A++
Sbjct: 899 RISGYCEQNDIHSPQVTVKESLIYSAFLRLPKEVTKYEKMRFVDEVMELVELESLKDAVV 958
Query: 962 GLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTI 1021
GLPGI GLSTEQRKRLTIAVELVANPSI+FMDEPTSGLDARAAAIVMRTVRN V+TGRT+
Sbjct: 959 GLPGITGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 1018
Query: 1022 VCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGSKSCELIKYFE 1066
VCTIHQPSIDIFE+FDELL +KRGG++IYAGPLG S ++I+YF+
Sbjct: 1019 VCTIHQPSIDIFEAFDELLLLKRGGQVIYAGPLGQNSHKIIEYFQ 1063
|
|
| TAIR|locus:2037703 ABCG35 "ATP-binding cassette G35" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3087 (1091.7 bits), Expect = 0., P = 0.
Identities = 593/1071 (55%), Positives = 777/1071 (72%)
Query: 6 ENVFSRTSSFRDEV-EDEEALRWAALERLPTYARARRGIFK-----NVVGDV---KEVDV 56
E++F+ +S V EDEEAL+WA++E+LPTY R R + +V G+ K VDV
Sbjct: 31 EDIFNTSSRRTKSVNEDEEALKWASIEKLPTYNRLRTSLMPELGEDDVYGNQILNKAVDV 90
Query: 57 SELAVQEQRLVLDRLVNAVEDDPERFFDRMRKRCEAVDLELPKIEVRFQNLTVESFVHLG 116
++L +E++ +D + E D ER ++R R + V ++LP +EVR+ +LTV++ + G
Sbjct: 91 TKLDGEERQKFIDMVFKVAEQDNERILTKLRNRIDRVGIQLPTVEVRYDHLTVKADCYTG 150
Query: 117 SRALPTIPNFIFNMTEALLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKXX 176
R+LP++ N + NM EA L + I +++LTIL D+SGI++PSR+TLLLGPPSSGK
Sbjct: 151 DRSLPSLLNAVRNMGEAALGMIGIRLAKKAQLTILKDVSGIVKPSRMTLLLGPPSSGKTT 210
Query: 177 XXXXXXXXXXXXXQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQC 236
VSG++TYNG+ EFVP +TSAY+SQ D V MTV+ETLDF+ +C
Sbjct: 211 LLLALAGKLDKSLDVSGEVTYNGYRLNEFVPIKTSAYISQNDLHVGIMTVKETLDFSARC 270
Query: 237 QGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCAD 296
QGVG++YD++ ELARREK AGI P+ D+D+FMK+ A G K+SL+ +Y +KILGLD C D
Sbjct: 271 QGVGTRYDLLNELARREKDAGIFPEADVDLFMKASAAQGVKSSLITDYTLKILGLDICKD 330
Query: 297 TLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRAL 356
T+VGD+M++GISGGQKKR+TTGE++VGP + LFMDEIS GLDSSTT+QI+K L+
Sbjct: 331 TIVGDDMMRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTFQIVKCLQQIVHLT 390
Query: 357 DGTTVISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFL 416
+ T +ISLLQPAPE ++LFDD+ILLSEGQIVYQGPR +L+FF S GF CP+RK ADFL
Sbjct: 391 EATVLISLLQPAPETFDLFDDIILLSEGQIVYQGPRDHILEFFESFGFKCPERKGTADFL 450
Query: 417 QEVTSKKDQEQYWSNPYLPYRYISPGKFAEAFHSYHTGKNLSEELAVPFDRRFNHPAALS 476
QEVTSKKDQEQYW +P PYRYI +FA +F +H G LS EL+VP+D+ +H AAL
Sbjct: 451 QEVTSKKDQEQYWVDPNRPYRYIPVSEFASSFKKFHVGSKLSNELSVPYDKSKSHKAALM 510
Query: 477 TSKYGEKRSELLKTSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHKTIDD 536
KY K++ELLK+ ++ + +LMKRNSF YVFK +Q++I+A IT T++ RT MH + D
Sbjct: 511 FDKYSIKKTELLKSCWDKEWMLMKRNSFFYVFKTVQIIIIAAITSTLYLRTEMHTRNEID 570
Query: 537 GGLYLGALYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIPTSL 596
+Y+G+L F+M++ +FNG E++M + +LPV YK RDL F+P W YT+P++ L IP S+
Sbjct: 571 ANIYVGSLLFAMIVNMFNGLAEMAMTIQRLPVFYKQRDLLFHPPWTYTLPTFLLGIPISI 630
Query: 597 IESGFWVAVTYYVIGYDPNVVRFSRQLLLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSF 656
ES W+ VTYY IGY P+ RF +Q L+ F + QM+ G+FR I S R M +ANT G
Sbjct: 631 FESTAWMVVTYYSIGYAPDAERFFKQFLIIFLIQQMAAGIFRFIASTCRTMTIANTGGVL 690
Query: 657 AMLVVMALGGFIISRDSIPKWWIWGFWVSPLMYAQNAASVNEFLGHSW-DKKAGNSNFSL 715
+LVV GGF++ R IP WW W +W+SPL YA NA +VNE W +K +GNS L
Sbjct: 691 VLLVVFLTGGFLLPRSEIPVWWRWAYWISPLSYAFNAITVNELFAPRWMNKMSGNSTTRL 750
Query: 716 GEAILRQRSLFPESYWYWIGVGAMLGYXXXXXXXXXXXXSYLNPLGKQQAVVSKKELQER 775
G ++L +F + WYWIGVG +LG+ +YL+PLGK QA++ K+E E
Sbjct: 751 GTSVLNIWDVFDDKNWYWIGVGGLLGFTVIFNGFFTLALTYLDPLGKAQAILPKEE-DEE 809
Query: 776 DRRRKGENVVIELREYLQRSSSLNGKYFKQKGMVLPFQPLSMAFGNINYFVDVPVELKQE 835
+ + G N E+ S++ K KGMVLPF PL+M+F ++ YFVD+P E++++
Sbjct: 810 AKGKAGSNKETEME-------SVSAK----KGMVLPFTPLAMSFDDVKYFVDMPAEMREQ 858
Query: 836 GVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPK 895
GV E RLQLL VT AFRPGVLTAL+GVSGAGKTTLMDVLAGRKTGG IEGD+ +SG+PK
Sbjct: 859 GVQETRLQLLKGVTSAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDVRVSGFPK 918
Query: 896 RQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTS 955
+QETFARISGYCEQ DIHSP +TV ESL+FSA+LRL E+ E + FV++VMELVEL
Sbjct: 919 KQETFARISGYCEQTDIHSPQVTVRESLIFSAFLRLAKEVSKEDKLMFVDQVMELVELVD 978
Query: 956 LSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIV 1015
L A++GLPG+ GLSTEQRKRLTIAVELVANPSI+FMDEPTSGLDARAAAIVMR VRN V
Sbjct: 979 LRDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTV 1038
Query: 1016 NTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGSKSCELIKYFE 1066
+TGRT+VCTIHQPSIDIFE+FDELL MKRGG +IY+GPLG S ++++YFE
Sbjct: 1039 DTGRTVVCTIHQPSIDIFEAFDELLLMKRGGHVIYSGPLGRNSHKVVEYFE 1089
|
|
| TAIR|locus:2025931 PEN3 "PENETRATION 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3071 (1086.1 bits), Expect = 0., P = 0.
Identities = 597/1086 (54%), Positives = 783/1086 (72%)
Query: 6 ENVFSRTSSFRDEV-EDEEALRWAALERLPTYARARRGIFKNVVGD--------VKEVDV 56
E++FS S V +DEEAL+WAA+E+LPTY+R R + VV D KEVDV
Sbjct: 33 EDIFSSGSRRTQSVNDDEEALKWAAIEKLPTYSRLRTTLMNAVVEDDVYGNQLMSKEVDV 92
Query: 57 SELAVQEQRLVLDRLVNAVEDDPERFFDRMRKRCEAVDLELPKIEVRFQNLTVESFVHLG 116
++L ++++ +D + E D ER ++R R + V ++LP +EVR+++LT+++ + G
Sbjct: 93 TKLDGEDRQKFIDMVFKVAEQDNERILTKLRNRIDRVGIKLPTVEVRYEHLTIKADCYTG 152
Query: 117 SRALPTIPNFIFNMTEALLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKXX 176
+R+LPT+ N + NM E+ L + I +++LTIL D+SG+I+P R+TLLLGPPSSGK
Sbjct: 153 NRSLPTLLNVVRNMGESALGMIGIQFAKKAQLTILKDISGVIKPGRMTLLLGPPSSGKTT 212
Query: 177 XXXXXXXXXXXXXQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQC 236
QVSG ITYNG+ EFVP +TSAY+SQ D V MTV+ETLDF+ +C
Sbjct: 213 LLLALAGKLDKSLQVSGDITYNGYQLDEFVPRKTSAYISQNDLHVGIMTVKETLDFSARC 272
Query: 237 QGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCAD 296
QGVG++YD++ ELARREK AGI P+ D+D+FMK+ A G K SLV +Y +KILGLD C D
Sbjct: 273 QGVGTRYDLLNELARREKDAGIFPEADVDLFMKASAAQGVKNSLVTDYTLKILGLDICKD 332
Query: 297 TLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRAL 356
T+VGD+M++GISGGQKKR+TTGE++VGP + LFMDEIS GLDSSTT+QI+K L+
Sbjct: 333 TIVGDDMMRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTFQIVKCLQQIVHLN 392
Query: 357 DGTTVISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFL 416
+ T ++SLLQPAPE ++LFDD+IL+SEGQIVYQGPR ++L+FF S GF CP+RK ADFL
Sbjct: 393 EATVLMSLLQPAPETFDLFDDIILVSEGQIVYQGPRDNILEFFESFGFKCPERKGTADFL 452
Query: 417 QEVTSKKDQEQYWSNPYLPYRYISPGKFAEAFHSYHTGKNLSEELAVPFDRRFNHPAALS 476
QEVTSKKDQEQYW NP PY YI +FA + S+H G +S ELAVPFD+ H AAL
Sbjct: 453 QEVTSKKDQEQYWVNPNRPYHYIPVSEFASRYKSFHVGTKMSNELAVPFDKSRGHKAALV 512
Query: 477 TSKYGEKRSELLKTSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHKTIDD 536
KY + ELLK+ ++ + LLM+RN+F YVFK +Q++I+A IT T+F RT M+ + D
Sbjct: 513 FDKYSVSKRELLKSCWDKEWLLMQRNAFFYVFKTVQIVIIAAITSTLFLRTEMNTRNEGD 572
Query: 537 GGLYLGALYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIPTSL 596
LY+GAL F M+I +FNGF E++M+V++LPV YK RDL FYPSW +++P++ L IP+S+
Sbjct: 573 ANLYIGALLFGMIINMFNGFAEMAMMVSRLPVFYKQRDLLFYPSWTFSLPTFLLGIPSSI 632
Query: 597 IESGFWVAVTYYVIGYDPNVVRFSRQLLLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSF 656
+ES W+ VTYY IG+ P+ RF +Q LL F + QM+ LFR+I S+ R M++ANT G+
Sbjct: 633 LESTAWMVVTYYSIGFAPDASRFFKQFLLVFLIQQMAASLFRLIASVCRTMMIANTGGAL 692
Query: 657 AMLVVMALGGFIISRDSIPKWWIWGFWVSPLMYAQNAASVNEFLGHSWDKK--AGNSNFS 714
+L+V LGGF++ + IP WW W +WVSPL YA N VNE W K + NS
Sbjct: 693 TLLLVFLLGGFLLPKGKIPDWWGWAYWVSPLTYAFNGLVVNEMFAPRWMNKMASSNSTIK 752
Query: 715 LGEAILRQRSLFPESYWYWIGVGAMLGYXXXXXXXXXXXXSYLNPLGKQQAVVSKKELQE 774
LG +L ++ + WYWI VGA+L + +YLNPLGK+ ++ ++E ++
Sbjct: 753 LGTMVLNTWDVYHQKNWYWISVGALLCFTALFNILFTLALTYLNPLGKKAGLLPEEENED 812
Query: 775 RD------RR--------RKGENVVIELREYLQRSSSLNGKYFKQKGMVLPFQPLSMAFG 820
D RR R+GE V R ++ +G +KGMVLPF PL+M+F
Sbjct: 813 ADQGKDPMRRSLSTADGNRRGE--VAMGRMSRDSAAEASGGAGNKKGMVLPFTPLAMSFD 870
Query: 821 NINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKT 880
++ YFVD+P E++ +GV E RLQLL VTGAFRPGVLTAL+GVSGAGKTTLMDVLAGRKT
Sbjct: 871 DVKYFVDMPGEMRDQGVTETRLQLLKGVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT 930
Query: 881 GGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQ 940
GG IEGD+ ISG+PK QETFARISGYCEQ DIHSP +TV ESL+FSA+LRLP E+ + +
Sbjct: 931 GGYIEGDVRISGFPKVQETFARISGYCEQTDIHSPQVTVRESLIFSAFLRLPKEVGKDEK 990
Query: 941 RAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLD 1000
FV++VMELVEL SL +++GLPG+ GLSTEQRKRLTIAVELVANPSI+FMDEPTSGLD
Sbjct: 991 MMFVDQVMELVELDSLRDSIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1050
Query: 1001 ARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGSKSCE 1060
ARAAAIVMR VRN V+TGRT+VCTIHQPSIDIFE+FDEL+ MKRGG++IYAGPLG S +
Sbjct: 1051 ARAAAIVMRAVRNTVDTGRTVVCTIHQPSIDIFEAFDELMLMKRGGQVIYAGPLGQNSHK 1110
Query: 1061 LIKYFE 1066
+++YFE
Sbjct: 1111 VVEYFE 1116
|
|
| TAIR|locus:2045683 ABCG31 "ATP-binding cassette G31" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1812 (642.9 bits), Expect = 4.3e-290, Sum P(2) = 4.3e-290
Identities = 349/772 (45%), Positives = 503/772 (65%)
Query: 9 FSRTSSFRDEVEDEEALRWAALERLPTYARA------RRGIFKNVV-----GDVKE-VDV 56
F+R S+ +DEE LRWAA+ RLP+ + RR + G+V + +DV
Sbjct: 22 FARPSNAETVEQDEEDLRWAAIGRLPSQRQGTHNAILRRSQTQTQTSGYADGNVVQTIDV 81
Query: 57 SELAVQEQRLVLDRLVNAVEDDPERFFDRMRKRCEAVDLELPKIEVRFQNLTVESFVHLG 116
+L ++ +++ + + + D + +++R + V +E+PKIEVRF+NL +E+ V G
Sbjct: 82 KKLDRADREMLVRQALATSDQDNFKLLSAIKERLDRVGMEVPKIEVRFENLNIEADVQAG 141
Query: 117 SRALPTIPNFIFNMTEALLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKXX 176
+RALPT+ N + E L LRI + + KL IL D+SGII+P R+TLLLGPP SGK
Sbjct: 142 TRALPTLVNVSRDFFERCLSSLRIIKPRKHKLNILKDISGIIKPGRMTLLLGPPGSGKST 201
Query: 177 XXXXXXXXXXXXXQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQC 236
+ +G ITYNG +F RTSAY+SQ D +AE+TVRETLDFA +C
Sbjct: 202 LLLALAGKLDKSLKKTGNITYNGENLNKFHVKRTSAYISQTDNHIAELTVRETLDFAARC 261
Query: 237 QGVGSKY-DMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCA 295
QG + + +L R EK GI+P ++D FMK+ ++ G+K S+ +Y++K+LGLD C+
Sbjct: 262 QGASEGFAGYMKDLTRLEKERGIRPSSEIDAFMKAASVKGEKHSVSTDYVLKVLGLDVCS 321
Query: 296 DTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRA 355
DT+VG++M++G+SGGQ+KR+TTGE+ VGP + LFMDEIS GLDSSTT+QI+K +++
Sbjct: 322 DTMVGNDMMRGVSGGQRKRVTTGEMTVGPRKTLFMDEISTGLDSSTTFQIVKCIRNFVHL 381
Query: 356 LDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADF 415
+D T +++LLQPAPE ++LFDD+ILLSEG +VYQGPR V+ FF S+GF P RK VADF
Sbjct: 382 MDATVLMALLQPAPETFDLFDDLILLSEGYMVYQGPREDVIAFFESLGFRLPPRKGVADF 441
Query: 416 LQEVTSKKDQEQYWSNPYLPYRYISPGKFAEAFHSYHTGKNLSEELAVPFDRRFNHPAAL 475
LQEVTSKKDQ QYW++P PY++I A AF + G +LA PFD++ P+AL
Sbjct: 442 LQEVTSKKDQAQYWADPSKPYQFIPVSDIAAAFRNSKYGHAADSKLAAPFDKKSADPSAL 501
Query: 476 STSKYGEKRSELLKTSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHKTID 535
+K+ E LK F +LLL+KR+ F+Y F+ Q+ V L+T TVF +T +H +
Sbjct: 502 CRTKFAISGWENLKVCFVRELLLIKRHKFLYTFRTCQVGFVGLVTATVFLKTRLHPTSEQ 561
Query: 536 DGGLYLGALYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIPTS 595
G YL L+F +V ++FNGF+E+ +++++LPV YK RD F+P+W ++I SW L +P S
Sbjct: 562 FGNEYLSCLFFGLVHMMFNGFSELPLMISRLPVFYKQRDNSFHPAWSWSIASWLLRVPYS 621
Query: 596 LIESGFWVAVTYYVIGYDPNVVRFSRQLLLYFFLHQMSIGLFRVIGSLGRNMIVANTFGS 655
++E+ W V Y+ +G P+ RF R +LL F +HQM++GLFR++ SL R+M++ANTFGS
Sbjct: 622 VLEAVVWSGVVYFTVGLAPSAGRFFRYMLLLFSVHQMALGLFRMMASLARDMVIANTFGS 681
Query: 656 FAMLVVMALGGFIISRDSIPKWWIWGFWVSPLMYAQNAASVNEFLGHSWDKKAGNSNFSL 715
A+L+V LGGF+I + I WW+WGFWVSPL Y Q A +VNEF W + S+ ++
Sbjct: 682 AAILIVFLLGGFVIPKADIKPWWVWGFWVSPLSYGQRAIAVNEFTATRWMTPSAISDTTI 741
Query: 716 GEAILRQRSLFPESYWYWIGVGAMLGYXXXXXXXXXXXXSYLNPLGKQQAVV 767
G +L+ RS YWYWIG+ ++GY +YLNPL K +AVV
Sbjct: 742 GLNLLKLRSFPTNDYWYWIGIAVLIGYAILFNNVVTLALAYLNPLRKARAVV 793
|
|
| TAIR|locus:2049867 ABCG33 "ATP-binding cassette G33" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2663 (942.5 bits), Expect = 4.7e-277, P = 4.7e-277
Identities = 533/1066 (50%), Positives = 716/1066 (67%)
Query: 11 RTSSFRDEVED-----EEALRWAALERLPTYARARRGIF-KNVVGDVKE---VDVSELAV 61
R+SS R+E ED E AL+WA ++RLPT+ R R + K G K VDV++L
Sbjct: 6 RSSSSRNEHEDGGDEAEHALQWAEIQRLPTFKRLRSSLVDKYGEGTEKGKKVVDVTKLGA 65
Query: 62 QEQRLVLDRLVNAVEDDPERFFDRMRKRCEAVDLELPKIEVRFQNLTVESFVHL-GSRAL 120
E+ L++++L+ +E+D + ++R+R E V +E P IEVR+++L VE+ + +AL
Sbjct: 66 MERHLMIEKLIKHIENDNLKLLKKIRRRMERVGVEFPSIEVRYEHLGVEAACEVVEGKAL 125
Query: 121 PTIPNFIFNMTEALLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKXXXXXX 180
PT+ N + ++ LL+ L R N + + IL D+SGII P RLTLLLGPP GK
Sbjct: 126 PTLWNSLKHVFLDLLK-LSGVRTNEANIKILTDVSGIISPGRLTLLLGPPGCGKTTLLKA 184
Query: 181 XXXXXXXXXQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVG 240
+ G+I+YNGHG E VP +TSAY+SQ D +AEMT RET+DF+ +CQGVG
Sbjct: 185 LSGNLENNLKCYGEISYNGHGLNEVVPQKTSAYISQHDLHIAEMTTRETIDFSARCQGVG 244
Query: 241 SKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVG 300
S+ D++ E+++REK GI PD ++D +MK+ ++ G K SL +YI+KILGLD CA+TLVG
Sbjct: 245 SRTDIMMEVSKREKDGGIIPDPEIDAYMKAISVKGLKRSLQTDYILKILGLDICAETLVG 304
Query: 301 DEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTT 360
+ M +GISGGQKKRLTT E++VGP + LFMDEI+NGLDSST +QIIK L+ + T
Sbjct: 305 NAMKRGISGGQKKRLTTAEMIVGPTKALFMDEITNGLDSSTAFQIIKSLQQVAHITNATV 364
Query: 361 VISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVT 420
+SLLQPAPE+Y+LFDD++L++EG+IVY GPR VL FF GF CP+RK VADFLQEV
Sbjct: 365 FVSLLQPAPESYDLFDDIVLMAEGKIVYHGPRDDVLKFFEECGFQCPERKGVADFLQEVI 424
Query: 421 SKKDQEQYWSNPYLPYRYISPGKFAEAFHSYHTGKNLSEELAVPFDRRFNHPAALSTSKY 480
SKKDQ QYW + LP+ ++S ++ F G+ + E L+ P+D H ALS + Y
Sbjct: 425 SKKDQGQYWLHQNLPHSFVSVDTLSKRFKDLEIGRKIEEALSKPYDISKTHKDALSFNVY 484
Query: 481 GEKRSELLKTSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHKTIDDGGLY 540
+ EL + + + LLMKRN F+Y+FK QL++ A+ITMTVF RT M I G Y
Sbjct: 485 SLPKWELFRACISREFLLMKRNYFVYLFKTFQLVLAAIITMTVFIRTRMDIDIIH-GNSY 543
Query: 541 LGALYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIPTSLIESG 600
+ L+F+ V++L +G E+SM V +L V YK + L FYP+W Y IP+ L IP S ES
Sbjct: 544 MSCLFFATVVLLVDGIPELSMTVQRLSVFYKQKQLCFYPAWAYAIPATVLKIPLSFFESL 603
Query: 601 FWVAVTYYVIGYDPNVVRFSRQLLLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSFAMLV 660
W +TYYVIGY P RF RQ ++ F +H SI +FR I ++ + + A T GSF ML+
Sbjct: 604 VWTCLTYYVIGYTPEPYRFFRQFMILFAVHFTSISMFRCIAAIFQTGVAAMTAGSFVMLI 663
Query: 661 VMALGGFIISRDSIPKWWIWGFWVSPLMYAQNAASVNEFLGHSWDKKAGNSNFSLGEAIL 720
GF I +P W WGFWV+P+ YA+ SVNEFL W K +N +LG IL
Sbjct: 664 TFVFAGFAIPYTDMPGWLKWGFWVNPISYAEIGLSVNEFLAPRWQKMQP-TNVTLGRTIL 722
Query: 721 RQRSLFPESYWYWIGVGAMLGYXXXXXXXXXXXXSYLNPLGKQQAVVSKKELQERDRRRK 780
R L + Y YW+ + A+LG S+L + ++S+ +L E +
Sbjct: 723 ESRGLNYDDYMYWVSLSALLGLTIIFNTIFTLALSFLKSPTSSRPMISQDKLSELQGTKD 782
Query: 781 GENVVIELREYLQRSSSLNGKYFKQKGMVLPFQPLSMAFGNINYFVDVPVELKQEGVLED 840
++ + L S N K M+LPF+PL++ F ++NY+VDVPVE+K +G E
Sbjct: 783 SS---VKKNKPLDSSIKTNEDPGK---MILPFKPLTITFQDLNYYVDVPVEMKGQGYNEK 836
Query: 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETF 900
+LQLL +TGAFRPGVLTAL+G+SGAGKTTL+DVLAGRKT G IEG+I ISG+ K QETF
Sbjct: 837 KLQLLSEITGAFRPGVLTALMGISGAGKTTLLDVLAGRKTSGYIEGEIRISGFLKVQETF 896
Query: 901 ARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGAL 960
AR+SGYCEQ DIHSP +TV ESL++SAWLRL EI +T+ FV++V+E +EL + AL
Sbjct: 897 ARVSGYCEQTDIHSPSITVEESLIYSAWLRLVPEINPQTKIRFVKQVLETIELEEIKDAL 956
Query: 961 IGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRT 1020
+G+ G++GLSTEQRKRLT+AVELVANPSI+FMDEPT+GLDARAAAIVMR V+N+ TGRT
Sbjct: 957 VGVAGVSGLSTEQRKRLTVAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVAETGRT 1016
Query: 1021 IVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGSKSCELIKYFE 1066
IVCTIHQPSI IFE+FDEL+ +KRGG +IY+GPLG S +I+YF+
Sbjct: 1017 IVCTIHQPSIHIFEAFDELVLLKRGGRMIYSGPLGQHSSCVIEYFQ 1062
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| TAIR|locus:2084081 ABCG37 "ATP-binding cassette G37" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2658 (940.7 bits), Expect = 1.6e-276, P = 1.6e-276
Identities = 519/1051 (49%), Positives = 719/1051 (68%)
Query: 22 EEALRWAALERLPTYARARRGIFKNVVGDVKE-----VDVSELAVQEQRLVLDRLVNAVE 76
E AL+WA +ERLPT R R + + + E VDV++L E+ L++++L+ +E
Sbjct: 56 EYALQWAEIERLPTVKRMRSTLLDDGDESMTEKGRRVVDVTKLGAVERHLMIEKLIKHIE 115
Query: 77 DDPERFFDRMRKRCEAVDLELPKIEVRFQNLTVESFVHL-GSRALPTIPNFIFNMTEALL 135
+D + ++R+R + V +ELP IEVR+++L V + + +ALPT+ N + L+
Sbjct: 116 NDNLKLLKKIRRRIDRVGMELPTIEVRYESLKVVAECEVVEGKALPTLWNTAKRVLSELV 175
Query: 136 RQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKXXXXXXXXXXXXXXXQVSGKI 195
+ L + + +K+ I++D++GII+P RLTLLLGPPS GK + SG+I
Sbjct: 176 K-LTGAKTHEAKINIINDVNGIIKPGRLTLLLGPPSCGKTTLLKALSGNLENNLKCSGEI 234
Query: 196 TYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKI 255
+YNGH EFVP +TSAY+SQ D +AEMTVRET+DF+ +CQGVGS+ D++ E+++REK
Sbjct: 235 SYNGHRLDEFVPQKTSAYISQYDLHIAEMTVRETVDFSARCQGVGSRTDIMMEVSKREKE 294
Query: 256 AGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRL 315
GI PD ++D +MK+ ++ G + SL +YI+KILGLD CA+ L+GD M +GISGGQKKRL
Sbjct: 295 KGIIPDTEVDAYMKAISVEGLQRSLQTDYILKILGLDICAEILIGDVMRRGISGGQKKRL 354
Query: 316 TTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELF 375
TT E++VGP + LFMDEI+NGLDSST +QI+K L+ T ++SLLQPAPE+Y+LF
Sbjct: 355 TTAEMIVGPTKALFMDEITNGLDSSTAFQIVKSLQQFAHISSATVLVSLLQPAPESYDLF 414
Query: 376 DDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVTSKKDQEQYWSNPYLP 435
DD++L+++G+IVY GPR VL+FF GF CP+RK VADFLQEV SKKDQ QYW + LP
Sbjct: 415 DDIMLMAKGRIVYHGPRGEVLNFFEDCGFRCPERKGVADFLQEVISKKDQAQYWWHEDLP 474
Query: 436 YRYISPGKFAEAFHSYHTGKNLSEELAVPFDRRFNHPAALSTSKYGEKRSELLKTSFNWQ 495
Y ++S ++ F GK + + L+ P+DR +H ALS S Y EL + +
Sbjct: 475 YSFVSVEMLSKKFKDLSIGKKIEDTLSKPYDRSKSHKDALSFSVYSLPNWELFIACISRE 534
Query: 496 LLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHKTIDDGGLYLGALYFSMVIILFNG 555
LLMKRN F+Y+FK QL++ A ITMTVF RT M I G Y+ AL+F+++I+L +G
Sbjct: 535 YLLMKRNYFVYIFKTAQLVMAAFITMTVFIRTRMGIDIIH-GNSYMSALFFALIILLVDG 593
Query: 556 FTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIPTSLIESGFWVAVTYYVIGYDPN 615
F E+SM +L V YK + L FYP+W Y IP+ L +P S ES W ++YYVIGY P
Sbjct: 594 FPELSMTAQRLAVFYKQKQLCFYPAWAYAIPATVLKVPLSFFESLVWTCLSYYVIGYTPE 653
Query: 616 VVRFSRQLLLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSFAMLVVMALGGFIISRDSIP 675
RF +Q +L F +H SI +FR + ++ + ++ + T GSF +L GF+I S+P
Sbjct: 654 ASRFFKQFILLFAVHFTSISMFRCLAAIFQTVVASITAGSFGILFTFVFAGFVIPPPSMP 713
Query: 676 KWWIWGFWVSPLMYAQNAASVNEFLGHSWDKKAGNSNFSLGEAILRQRSLFPESYWYWIG 735
W WGFW +PL Y + SVNEFL W++ N NF+LG IL+ R + Y YW+
Sbjct: 714 AWLKWGFWANPLSYGEIGLSVNEFLAPRWNQMQPN-NFTLGRTILQTRGMDYNGYMYWVS 772
Query: 736 VGAMLGYXXXXXXXXXXXXSYLNPLGKQQAVVSKKELQERDRRRKGENVVIELREYLQRS 795
+ A+LG+ ++L +A++S+ +L E K E +++
Sbjct: 773 LCALLGFTVLFNIIFTLALTFLKSPTSSRAMISQDKLSELQGTEKST----EDSSVRKKT 828
Query: 796 SSLNGKYFKQKGMVLPFQPLSMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPG 855
+ K ++ MVLPF+PL++ F ++NYFVD+PVE++ +G + +LQLL ++TGAFRPG
Sbjct: 829 TDSPVKTEEEDKMVLPFKPLTVTFQDLNYFVDMPVEMRDQGYDQKKLQLLSDITGAFRPG 888
Query: 856 VLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSP 915
+LTAL+GVSGAGKTTL+DVLAGRKT G IEGDI ISG+PK QETFAR+SGYCEQ DIHSP
Sbjct: 889 ILTALMGVSGAGKTTLLDVLAGRKTSGYIEGDIRISGFPKVQETFARVSGYCEQTDIHSP 948
Query: 916 GLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRK 975
+TV ES+++SAWLRL EI+ T+ FV++V+E +EL + +L+G+ G++GLSTEQRK
Sbjct: 949 NITVEESVIYSAWLRLAPEIDATTKTKFVKQVLETIELDEIKDSLVGVTGVSGLSTEQRK 1008
Query: 976 RLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFES 1035
RLTIAVELVANPSI+FMDEPT+GLDARAAAIVMR V+N+ +TGRTIVCTIHQPSIDIFE+
Sbjct: 1009 RLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFEA 1068
Query: 1036 FDELLFMKRGGELIYAGPLGSKSCELIKYFE 1066
FDEL+ +KRGG +IY GPLG S +I+YFE
Sbjct: 1069 FDELVLLKRGGRMIYTGPLGQHSRHIIEYFE 1099
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| O81016 | AB32G_ARATH | No assigned EC number | 0.8069 | 0.9824 | 0.7507 | yes | no |
| Q8GU87 | PDR6_ORYSJ | No assigned EC number | 0.7388 | 0.9797 | 0.7454 | yes | no |
| Q8GU88 | PDR7_ORYSJ | No assigned EC number | 0.6274 | 0.9714 | 0.7299 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | estExt_fgenesh4_pg.C_LG_XVIII0607 | hypothetical protein (1420 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1085 | |||
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 0.0 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 0.0 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 1e-101 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 3e-75 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 1e-66 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 2e-61 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 3e-59 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 1e-53 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 3e-44 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 2e-43 | |
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 3e-43 | |
| pfam01061 | 210 | pfam01061, ABC2_membrane, ABC-2 type transporter | 4e-43 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 2e-39 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 3e-39 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 1e-38 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 3e-33 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 1e-31 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 4e-31 | |
| pfam08370 | 65 | pfam08370, PDR_assoc, Plant PDR ABC transporter as | 3e-29 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 2e-28 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 1e-26 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 3e-25 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 6e-25 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 7e-25 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 5e-24 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 2e-23 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 4e-23 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 1e-22 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 5e-22 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 6e-22 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 1e-21 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 2e-21 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 9e-21 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 1e-20 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 1e-20 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 1e-20 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 2e-20 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 2e-20 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 3e-19 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 3e-19 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 1e-18 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 1e-18 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 2e-18 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 3e-18 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 1e-17 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 2e-17 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 2e-17 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 2e-17 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 4e-17 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 7e-17 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 1e-16 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 1e-16 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 1e-16 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 3e-16 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 3e-16 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 4e-16 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 5e-16 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 7e-16 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 7e-16 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 7e-16 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 9e-16 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 9e-16 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 1e-15 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 1e-15 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 1e-15 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 1e-15 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 1e-15 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 2e-15 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 3e-15 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 4e-15 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 5e-15 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 6e-15 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 7e-15 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 7e-15 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 1e-14 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 1e-14 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 1e-14 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 2e-14 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 3e-14 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 3e-14 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 4e-14 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 4e-14 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 7e-14 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 1e-13 | |
| PRK09984 | 262 | PRK09984, PRK09984, phosphonate/organophosphate es | 1e-13 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 2e-13 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 2e-13 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 2e-13 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 2e-13 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 3e-13 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 4e-13 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 4e-13 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 5e-13 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 5e-13 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 5e-13 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 6e-13 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 7e-13 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 9e-13 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 9e-13 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 1e-12 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 1e-12 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 1e-12 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 2e-12 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 2e-12 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 2e-12 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 2e-12 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 2e-12 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 2e-12 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 2e-12 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 2e-12 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 3e-12 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 3e-12 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 3e-12 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 4e-12 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 4e-12 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 4e-12 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 5e-12 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 6e-12 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 6e-12 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 6e-12 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 7e-12 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 8e-12 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 9e-12 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 1e-11 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 1e-11 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 1e-11 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 1e-11 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 1e-11 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 1e-11 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 1e-11 | |
| PRK15056 | 272 | PRK15056, PRK15056, manganese/iron transporter ATP | 1e-11 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 1e-11 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 2e-11 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 2e-11 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 2e-11 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 2e-11 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 3e-11 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 3e-11 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 3e-11 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 4e-11 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 4e-11 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 4e-11 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 4e-11 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 4e-11 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 4e-11 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 6e-11 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 6e-11 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 6e-11 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 6e-11 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 6e-11 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 7e-11 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 7e-11 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 8e-11 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 8e-11 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 9e-11 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 1e-10 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 1e-10 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 1e-10 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 2e-10 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 2e-10 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 2e-10 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 2e-10 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 2e-10 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 2e-10 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 2e-10 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 2e-10 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 3e-10 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 3e-10 | |
| TIGR03411 | 242 | TIGR03411, urea_trans_UrtD, urea ABC transporter, | 3e-10 | |
| PRK11701 | 258 | PRK11701, phnK, phosphonate C-P lyase system prote | 3e-10 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 3e-10 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 4e-10 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 4e-10 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 5e-10 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 5e-10 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 6e-10 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 6e-10 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 7e-10 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 8e-10 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 8e-10 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 8e-10 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 9e-10 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 9e-10 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 9e-10 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 1e-09 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 1e-09 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 1e-09 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 1e-09 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 1e-09 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 1e-09 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 1e-09 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 2e-09 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 2e-09 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 3e-09 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 3e-09 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 3e-09 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 3e-09 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 4e-09 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 4e-09 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 5e-09 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 5e-09 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 5e-09 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 5e-09 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 6e-09 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 7e-09 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 7e-09 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 8e-09 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 9e-09 | |
| PRK03695 | 248 | PRK03695, PRK03695, vitamin B12-transporter ATPase | 9e-09 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 9e-09 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 1e-08 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 1e-08 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 1e-08 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 1e-08 | |
| PRK11000 | 369 | PRK11000, PRK11000, maltose/maltodextrin transport | 1e-08 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 1e-08 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 1e-08 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 1e-08 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 1e-08 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 2e-08 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 2e-08 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 2e-08 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 2e-08 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 2e-08 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 2e-08 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 2e-08 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 2e-08 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 2e-08 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 2e-08 | |
| PRK13641 | 287 | PRK13641, cbiO, cobalt transporter ATP-binding sub | 2e-08 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 3e-08 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 3e-08 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 3e-08 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 3e-08 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 4e-08 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 4e-08 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 4e-08 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 4e-08 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 5e-08 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 5e-08 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 5e-08 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 6e-08 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 6e-08 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 6e-08 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 7e-08 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 7e-08 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 7e-08 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 8e-08 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 8e-08 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 1e-07 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 1e-07 | |
| PRK09493 | 240 | PRK09493, glnQ, glutamine ABC transporter ATP-bind | 1e-07 | |
| PRK11300 | 255 | PRK11300, livG, leucine/isoleucine/valine transpor | 1e-07 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 1e-07 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 1e-07 | |
| cd03369 | 207 | cd03369, ABCC_NFT1, ATP-binding cassette domain 2 | 1e-07 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 2e-07 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 2e-07 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 2e-07 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 2e-07 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 2e-07 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 3e-07 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 3e-07 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 3e-07 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 3e-07 | |
| PRK13649 | 280 | PRK13649, cbiO, cobalt transporter ATP-binding sub | 3e-07 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 3e-07 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 3e-07 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 4e-07 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 4e-07 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 4e-07 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 4e-07 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 4e-07 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 4e-07 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 4e-07 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 4e-07 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 5e-07 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 5e-07 | |
| PRK13631 | 320 | PRK13631, cbiO, cobalt transporter ATP-binding sub | 5e-07 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 6e-07 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 6e-07 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 6e-07 | |
| TIGR02324 | 224 | TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys | 6e-07 | |
| COG4161 | 242 | COG4161, ArtP, ABC-type arginine transport system, | 6e-07 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 7e-07 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 7e-07 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 7e-07 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 7e-07 | |
| PRK13543 | 214 | PRK13543, PRK13543, cytochrome c biogenesis protei | 7e-07 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 8e-07 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 8e-07 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 8e-07 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 1e-06 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 1e-06 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 1e-06 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 1e-06 | |
| PRK03695 | 248 | PRK03695, PRK03695, vitamin B12-transporter ATPase | 1e-06 | |
| PRK13543 | 214 | PRK13543, PRK13543, cytochrome c biogenesis protei | 1e-06 | |
| PRK14266 | 250 | PRK14266, PRK14266, phosphate ABC transporter ATP- | 1e-06 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 1e-06 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 1e-06 | |
| PRK14261 | 253 | PRK14261, PRK14261, phosphate ABC transporter ATP- | 1e-06 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 1e-06 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 2e-06 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 2e-06 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 2e-06 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 2e-06 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 2e-06 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 2e-06 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 2e-06 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 2e-06 | |
| PRK13644 | 274 | PRK13644, cbiO, cobalt transporter ATP-binding sub | 2e-06 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 3e-06 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 3e-06 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 3e-06 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 3e-06 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 3e-06 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 3e-06 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 4e-06 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 4e-06 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 4e-06 | |
| PRK14241 | 258 | PRK14241, PRK14241, phosphate transporter ATP-bind | 4e-06 | |
| COG4138 | 248 | COG4138, BtuD, ABC-type cobalamin transport system | 4e-06 | |
| COG2401 | 593 | COG2401, COG2401, ABC-type ATPase fused to a predi | 4e-06 | |
| cd03290 | 218 | cd03290, ABCC_SUR1_N, ATP-binding cassette domain | 4e-06 | |
| PRK14235 | 267 | PRK14235, PRK14235, phosphate transporter ATP-bind | 5e-06 | |
| PRK14256 | 252 | PRK14256, PRK14256, phosphate ABC transporter ATP- | 5e-06 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 6e-06 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 6e-06 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 6e-06 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 6e-06 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 6e-06 | |
| cd03290 | 218 | cd03290, ABCC_SUR1_N, ATP-binding cassette domain | 7e-06 | |
| PRK14242 | 253 | PRK14242, PRK14242, phosphate transporter ATP-bind | 7e-06 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 7e-06 | |
| PRK14245 | 250 | PRK14245, PRK14245, phosphate ABC transporter ATP- | 7e-06 | |
| cd03288 | 257 | cd03288, ABCC_SUR2, ATP-binding cassette domain 2 | 7e-06 | |
| PRK10790 | 592 | PRK10790, PRK10790, putative multidrug transporter | 8e-06 | |
| COG4598 | 256 | COG4598, HisP, ABC-type histidine transport system | 9e-06 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 9e-06 | |
| PRK13650 | 279 | PRK13650, cbiO, cobalt transporter ATP-binding sub | 9e-06 | |
| PRK09544 | 251 | PRK09544, znuC, high-affinity zinc transporter ATP | 9e-06 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 1e-05 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 1e-05 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 1e-05 | |
| COG4138 | 248 | COG4138, BtuD, ABC-type cobalamin transport system | 1e-05 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 1e-05 | |
| CHL00131 | 252 | CHL00131, ycf16, sulfate ABC transporter protein; | 1e-05 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 1e-05 | |
| PRK13540 | 200 | PRK13540, PRK13540, cytochrome c biogenesis protei | 1e-05 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 1e-05 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 1e-05 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 1e-05 | |
| PRK10419 | 268 | PRK10419, nikE, nickel transporter ATP-binding pro | 1e-05 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 1e-05 | |
| PRK10619 | 257 | PRK10619, PRK10619, histidine/lysine/arginine/orni | 1e-05 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 2e-05 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 2e-05 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 2e-05 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 2e-05 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 2e-05 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 2e-05 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 2e-05 | |
| PRK13631 | 320 | PRK13631, cbiO, cobalt transporter ATP-binding sub | 2e-05 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 2e-05 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 2e-05 | |
| PRK14264 | 305 | PRK14264, PRK14264, phosphate ABC transporter ATP- | 2e-05 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 2e-05 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 2e-05 | |
| PRK11124 | 242 | PRK11124, artP, arginine transporter ATP-binding s | 2e-05 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 3e-05 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 3e-05 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 3e-05 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 3e-05 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 3e-05 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 3e-05 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 3e-05 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 3e-05 | |
| PRK13648 | 269 | PRK13648, cbiO, cobalt transporter ATP-binding sub | 3e-05 | |
| PRK11153 | 343 | PRK11153, metN, DL-methionine transporter ATP-bind | 3e-05 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 3e-05 | |
| PRK14236 | 272 | PRK14236, PRK14236, phosphate transporter ATP-bind | 3e-05 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 4e-05 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 4e-05 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 4e-05 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 4e-05 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 5e-05 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 5e-05 | |
| cd03236 | 255 | cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-bin | 5e-05 | |
| cd03238 | 176 | cd03238, ABC_UvrA, ATP-binding cassette domain of | 5e-05 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 6e-05 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 6e-05 | |
| COG4167 | 267 | COG4167, SapF, ABC-type antimicrobial peptide tran | 6e-05 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 6e-05 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 7e-05 | |
| PRK13538 | 204 | PRK13538, PRK13538, cytochrome c biogenesis protei | 7e-05 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 9e-05 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 9e-05 | |
| PRK14249 | 251 | PRK14249, PRK14249, phosphate ABC transporter ATP- | 9e-05 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 1e-04 | |
| PRK14268 | 258 | PRK14268, PRK14268, phosphate ABC transporter ATP- | 1e-04 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 1e-04 | |
| PRK13642 | 277 | PRK13642, cbiO, cobalt transporter ATP-binding sub | 1e-04 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 1e-04 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 1e-04 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 1e-04 | |
| PRK14274 | 259 | PRK14274, PRK14274, phosphate ABC transporter ATP- | 1e-04 | |
| PRK14252 | 265 | PRK14252, PRK14252, phosphate ABC transporter ATP- | 1e-04 | |
| PRK14271 | 276 | PRK14271, PRK14271, phosphate ABC transporter ATP- | 1e-04 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 2e-04 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 2e-04 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 2e-04 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 2e-04 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 2e-04 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 2e-04 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 2e-04 | |
| PRK14267 | 253 | PRK14267, PRK14267, phosphate ABC transporter ATP- | 2e-04 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 2e-04 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 3e-04 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 3e-04 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 3e-04 | |
| PRK14271 | 276 | PRK14271, PRK14271, phosphate ABC transporter ATP- | 3e-04 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 3e-04 | |
| PRK14275 | 286 | PRK14275, PRK14275, phosphate ABC transporter ATP- | 3e-04 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 4e-04 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 4e-04 | |
| PRK11176 | 582 | PRK11176, PRK11176, lipid transporter ATP-binding/ | 4e-04 | |
| PRK14257 | 329 | PRK14257, PRK14257, phosphate ABC transporter ATP- | 4e-04 | |
| PRK14257 | 329 | PRK14257, PRK14257, phosphate ABC transporter ATP- | 4e-04 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 4e-04 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 4e-04 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 5e-04 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 5e-04 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 5e-04 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 5e-04 | |
| PRK14269 | 246 | PRK14269, PRK14269, phosphate ABC transporter ATP- | 5e-04 | |
| PRK14273 | 254 | PRK14273, PRK14273, phosphate ABC transporter ATP- | 5e-04 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 5e-04 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 6e-04 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 6e-04 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 6e-04 | |
| PRK14254 | 285 | PRK14254, PRK14254, phosphate ABC transporter ATP- | 6e-04 | |
| PRK09580 | 248 | PRK09580, sufC, cysteine desulfurase ATPase compon | 6e-04 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 6e-04 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 7e-04 | |
| PRK11308 | 327 | PRK11308, dppF, dipeptide transporter ATP-binding | 7e-04 | |
| PRK14273 | 254 | PRK14273, PRK14273, phosphate ABC transporter ATP- | 8e-04 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 8e-04 | |
| PRK14238 | 271 | PRK14238, PRK14238, phosphate transporter ATP-bind | 8e-04 | |
| COG0842 | 286 | COG0842, COG0842, ABC-type multidrug transport sys | 8e-04 | |
| PRK14256 | 252 | PRK14256, PRK14256, phosphate ABC transporter ATP- | 9e-04 | |
| PRK10908 | 222 | PRK10908, PRK10908, cell division protein FtsE; Pr | 9e-04 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 0.001 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 0.001 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 0.001 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 0.001 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 0.001 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 0.001 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 0.001 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 0.001 | |
| cd03227 | 162 | cd03227, ABC_Class2, ATP-binding cassette domain o | 0.001 | |
| PRK11147 | 635 | PRK11147, PRK11147, ABC transporter ATPase compone | 0.001 | |
| PRK10789 | 569 | PRK10789, PRK10789, putative multidrug transporter | 0.001 | |
| PRK10789 | 569 | PRK10789, PRK10789, putative multidrug transporter | 0.001 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 0.001 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 0.001 | |
| PRK11614 | 237 | PRK11614, livF, leucine/isoleucine/valine transpor | 0.001 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 0.001 | |
| cd03215 | 182 | cd03215, ABC_Carb_Monos_II, Second domain of the A | 0.001 | |
| PRK14244 | 251 | PRK14244, PRK14244, phosphate ABC transporter ATP- | 0.001 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 0.002 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 0.002 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 0.002 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 0.002 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 0.002 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 0.002 | |
| PRK14258 | 261 | PRK14258, PRK14258, phosphate ABC transporter ATP- | 0.002 | |
| PRK14258 | 261 | PRK14258, PRK14258, phosphate ABC transporter ATP- | 0.002 | |
| PRK13645 | 289 | PRK13645, cbiO, cobalt transporter ATP-binding sub | 0.002 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 0.003 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 0.003 | |
| cd03237 | 246 | cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin | 0.003 | |
| PRK11650 | 356 | PRK11650, ugpC, glycerol-3-phosphate transporter A | 0.003 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 0.004 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 0.004 | |
| TIGR03411 | 242 | TIGR03411, urea_trans_UrtD, urea ABC transporter, | 0.004 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 0.004 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 0.004 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 0.004 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 0.004 | |
| PRK14237 | 267 | PRK14237, PRK14237, phosphate transporter ATP-bind | 0.004 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 1497 bits (3877), Expect = 0.0
Identities = 643/1096 (58%), Positives = 826/1096 (75%), Gaps = 37/1096 (3%)
Query: 6 ENVFS------RTSSFRDEVEDEEALRWAALERLPTYARARRGIFKNVVGDV-------- 51
E+VFS R +S DE DEEAL+WAA+E+LPTY+R R I K+ V +
Sbjct: 24 EDVFSGGSQSRRRTSSVDE--DEEALKWAAIEKLPTYSRLRTSIMKSFVENDVYGNQLLH 81
Query: 52 KEVDVSELAVQEQRLVLDRLVNAVEDDPERFFDRMRKRCEAVDLELPKIEVRFQNLTVES 111
KEVDV++L +++ +D + E+D E+F + R R + V ++LP +EVRF++LTVE+
Sbjct: 82 KEVDVTKLDGNDRQKFIDMVFKVAEEDNEKFLKKFRNRIDRVGIKLPTVEVRFEHLTVEA 141
Query: 112 FVHLGSRALPTIPNFIFNMTEALLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPS 171
++GSRALPT+PN N+ E+ L L I ++KLTIL D SGII+PSR+TLLLGPPS
Sbjct: 142 DCYIGSRALPTLPNAARNIAESALGMLGINLAKKTKLTILKDASGIIKPSRMTLLLGPPS 201
Query: 172 SGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLD 231
SGKTTLLLALAG+L L+VSG+ITYNG+ EFVP +TSAY+SQ D V MTV+ETLD
Sbjct: 202 SGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVKETLD 261
Query: 232 FAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGL 291
F+ +CQGVG++YD+++ELARREK AGI P+ ++D+FMK+ A+ G K+SL+ +Y +KILGL
Sbjct: 262 FSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGL 321
Query: 292 DTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKH 351
D C DT+VGDEM++GISGGQKKR+TTGE++VGP + LFMDEIS GLDSSTTYQI+K L+
Sbjct: 322 DICKDTIVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQ 381
Query: 352 STRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKN 411
+ T ++SLLQPAPE ++LFDD+ILLSEGQIVYQGPR +L+FF S GF CP+RK
Sbjct: 382 IVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQIVYQGPRDHILEFFESCGFKCPERKG 441
Query: 412 VADFLQEVTSKKDQEQYWSNPYLPYRYISPGKFAEAFHSYHTGKNLSEELAVPFDRRFNH 471
ADFLQEVTSKKDQEQYW++ PYRYIS +FAE F S+H G L EL+VPFD+ +H
Sbjct: 442 TADFLQEVTSKKDQEQYWADRNKPYRYISVSEFAERFKSFHVGMQLENELSVPFDKSQSH 501
Query: 472 PAALSTSKYGEKRSELLKTSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHH 531
AAL SKY + ELLK ++ + LLMKRN+F+YVFK +Q++IVA I TVF RT MH
Sbjct: 502 KAALVFSKYSVPKMELLKACWDKEWLLMKRNAFVYVFKTVQIIIVAAIASTVFLRTEMHT 561
Query: 532 KTIDDGGLYLGALYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALS 591
+ +DG LY+GAL FSM+I +FNGF E+++++ +LPV YK RDL F+P W +T+P++ L
Sbjct: 562 RNEEDGALYIGALLFSMIINMFNGFAELALMIQRLPVFYKQRDLLFHPPWTFTLPTFLLG 621
Query: 592 IPTSLIESGFWVAVTYYVIGYDPNVVRFSRQLLLYFFLHQMSIGLFRVIGSLGRNMIVAN 651
IP S+IES WV +TYY IG+ P RF +QLLL F + QM+ G+FR+I S+ R MI+AN
Sbjct: 622 IPISIIESVVWVVITYYSIGFAPEASRFFKQLLLVFLIQQMAAGIFRLIASVCRTMIIAN 681
Query: 652 TFGSFAMLVVMALGGFIISRDSIPKWWIWGFWVSPLMYAQNAASVNEFLGHSW-DKKAGN 710
T G+ +L+V LGGFI+ + IP WW W +WVSPL Y NA +VNE W +K A +
Sbjct: 682 TGGALVLLLVFLLGGFILPKGEIPNWWEWAYWVSPLSYGFNALAVNEMFAPRWMNKMASD 741
Query: 711 SNFSLGEAILRQRSLFPESYWYWIGVGAMLGYTLLFNALFTFFLSYLNPLGKQQAVVSKK 770
++ LG A+L +F + WYWIGVGA+LG+T+LFN LFT L+YLNPLGK+QA++S++
Sbjct: 742 NSTRLGTAVLNIFDVFTDKNWYWIGVGALLGFTILFNVLFTLALTYLNPLGKKQAIISEE 801
Query: 771 ELQERD----------------RRRKGENVVIELREYLQRSSSLNGKYFK----QKGMVL 810
+E + R+ + E L ++ + + ++GMVL
Sbjct: 802 TAEEMEGEEDSIPRSLSSADGNNTREVAIQRMSNPEGLSKNRDSSLEAANGVAPKRGMVL 861
Query: 811 PFQPLSMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTT 870
PF PL+M+F ++NYFVD+P E+K++GV EDRLQLL VTGAFRPGVLTAL+GVSGAGKTT
Sbjct: 862 PFTPLAMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTT 921
Query: 871 LMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLESLLFSAWLR 930
LMDVLAGRKTGG IEGDI ISG+PK+QETFARISGYCEQNDIHSP +TV ESL++SA+LR
Sbjct: 922 LMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVRESLIYSAFLR 981
Query: 931 LPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIV 990
LP E+ E + FV+EVMELVEL +L A++GLPG+ GLSTEQRKRLTIAVELVANPSI+
Sbjct: 982 LPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSII 1041
Query: 991 FMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIY 1050
FMDEPTSGLDARAAAIVMRTVRN V+TGRT+VCTIHQPSIDIFE+FDELL MKRGG++IY
Sbjct: 1042 FMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIY 1101
Query: 1051 AGPLGSKSCELIKYFE 1066
+GPLG S ++I+YFE
Sbjct: 1102 SGPLGRNSHKIIEYFE 1117
|
Length = 1470 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 899 bits (2324), Expect = 0.0
Identities = 318/1047 (30%), Positives = 506/1047 (48%), Gaps = 104/1047 (9%)
Query: 76 EDDPERFFDRMRKRCEAVDLELP--KIEVRFQNLTVESFVHLGSRALPTIPNFIFNMTEA 133
E + + + RK ++ + K+ V ++NL+ V S PT PN + +
Sbjct: 2 EFNAKAWVKNFRKLIDSDPIYYKPYKLGVAYKNLSAYG-VAADSDYQPTFPNALLKILTR 60
Query: 134 LLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRL-GHHLQVS 192
R+L+ +R ++ IL + G+I+P LT++LG P SG +TLL +A G H+ V
Sbjct: 61 GFRKLKKFRDTKTF-DILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVE 119
Query: 193 GKITYNGHGFKEFVP--PRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELA 250
G ITY+G +E Y ++ D +TV ETLDFA +C+ ++ D ++
Sbjct: 120 GVITYDGITPEEIKKHYRGDVVYNAETDVHFPHLTVGETLDFAARCKTPQNRPDGVSREE 179
Query: 251 RREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGG 310
+ IA + M GL +T VG++ ++G+SGG
Sbjct: 180 YAKHIA--------------------------DVYMATYGLSHTRNTKVGNDFVRGVSGG 213
Query: 311 QKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPE 370
++KR++ E +G A++ D + GLDS+T + I+ LK S LD T ++++ Q + +
Sbjct: 214 ERKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQD 273
Query: 371 AYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVTSKKDQEQYWS 430
AYELFD VI+L EG +Y GP +F MGF CP R+ ADFL +TS + Q
Sbjct: 274 AYELFDKVIVLYEGYQIYFGPADKAKQYFEKMGFKCPDRQTTADFLTSLTSPA-ERQIKP 332
Query: 431 NPYLPYRYISPGKFAEAFHSYHTGKNLSEELAVPFDR----------RFNHPA-----AL 475
Y +P +F + + L +E+ DR R +H A
Sbjct: 333 G-YEKKVPRTPQEFETYWRNSPEYAQLMKEIDEYLDRCSESDTKEAYRESHVAKQSKRTR 391
Query: 476 STSKYGEKRSELLKTSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHKTID 535
+S Y S +K L MK N +F +I+ALI +VF+
Sbjct: 392 PSSPYTVSFSMQVKYCLARNFLRMKGNPSFTLFMVFGNIIMALILSSVFYNLPK---NTS 448
Query: 536 DGGLYLGALYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIPTS 595
D GAL+F+++ F+ E++ + P++ KHR Y I S IP
Sbjct: 449 DFYSRGGALFFAILFNAFSSLLEIASMYEARPIVEKHRKYALYHPSADAIASIISEIPFK 508
Query: 596 LIESGFWVAVTYYVIGYDPNVVRFSRQLLLYFFLHQMSIGLFRVIGSLGRNMIVANTFGS 655
+IES + + Y+++ + RF LL+ F LFR IG++ + + A T +
Sbjct: 509 IIESVVFNIILYFMVNFRRTAGRFFFYLLILFICTLAMSHLFRSIGAVTKTLSEAMTPAA 568
Query: 656 FAMLVVMALGGFIISRDSIPKWWIWGFWVSPLMYAQNAASVNEFLGHSWD---------- 705
+L + GF I R S+ W W ++V+PL YA + VNEF G ++
Sbjct: 569 ILLLALSIYTGFAIPRPSMLGWSKWIYYVNPLAYAFESLMVNEFHGRRFECSQYVPSGGG 628
Query: 706 -KKAGNSN-------------FSLGEAILRQRSLFPESYWYWIGVGAMLGYTLLFNALFT 751
G +N + G+ L+ + S W G ++G+T+ F ++
Sbjct: 629 YDNLGVTNKVCTVVGAEPGQDYVDGDDYLKLSFQYYNS-HKWRNFGIIIGFTVFFFFVYI 687
Query: 752 FFLSYLNPLGKQQAVVSKKELQERDRRRKGENVVIELREYLQRSSSLNGKYFKQKGMVLP 811
+ ++ ++ + + ++ GE +S+ N + G VL
Sbjct: 688 LLTEFNKGAKQKGEILVFRRGSLKRAKKAGET----------SASNKND---IEAGEVLG 734
Query: 812 FQPLSMAFGNINYFVDVPVELKQE-----------GVLEDRLQLLVNVTGAFRPGVLTAL 860
L+ ++N D+ E ++ + +++ +L NV G +PG LTAL
Sbjct: 735 STDLTDESDDVNDEKDMEKESGEDIFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTAL 794
Query: 861 VGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVL 920
+G SGAGKTTL++VLA R T G+I G + +F R GY +Q D+H P TV
Sbjct: 795 MGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQRSIGYVQQQDLHLPTSTVR 854
Query: 921 ESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIA 980
ESL FSA+LR P + + +VEEV++L+E+ S + A++G+PG GL+ EQRKRLTI
Sbjct: 855 ESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGE-GLNVEQRKRLTIG 913
Query: 981 VELVANP-SIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDEL 1039
VELVA P ++F+DEPTSGLD++ A + + +R + + G+ I+CTIHQPS +FE FD L
Sbjct: 914 VELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRL 973
Query: 1040 LFMKRGGELIYAGPLGSKSCELIKYFE 1066
L +++GG+ +Y G LG S +I YFE
Sbjct: 974 LLLQKGGQTVYFGDLGENSHTIINYFE 1000
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 317 bits (815), Expect = e-101
Identities = 112/239 (46%), Positives = 144/239 (60%), Gaps = 47/239 (19%)
Query: 814 PLSMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMD 873
+ + N+NY V V + QLL N++G +PG LTAL+G SGAGKTTL+D
Sbjct: 1 GSVLTWKNLNYTVPVK---------GGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLD 51
Query: 874 VLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPS 933
VLAGRKT G+I G+I I+G P + F R +GY EQ D+HSP LTV E+L FSA LR
Sbjct: 52 VLAGRKTAGVITGEILINGRPLD-KNFQRSTGYVEQQDVHSPNLTVREALRFSALLR--- 107
Query: 934 EIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMD 993
GLS EQRKRLTI VEL A PSI+F+D
Sbjct: 108 ----------------------------------GLSVEQRKRLTIGVELAAKPSILFLD 133
Query: 994 EPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAG 1052
EPTSGLD++AA ++R ++ + ++G+ I+CTIHQPS IFE FD LL +KRGG+ +Y G
Sbjct: 134 EPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 245 bits (629), Expect = 3e-75
Identities = 98/239 (41%), Positives = 143/239 (59%), Gaps = 45/239 (18%)
Query: 814 PLSMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMD 873
++++F N+ V + QLL NV+G +PG LTA++G SGAGK+TL++
Sbjct: 1 GVTLSFRNLTVTVK-------SSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLN 53
Query: 874 VLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPS 933
LAGR+TG + G++ I+G P + +F +I GY Q+DI P LTV E+L+F+A LR
Sbjct: 54 ALAGRRTGLGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKLR--- 110
Query: 934 EIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMD 993
GLS +RKR++IA+ELV+NPS++F+D
Sbjct: 111 ----------------------------------GLSGGERKRVSIALELVSNPSLLFLD 136
Query: 994 EPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAG 1052
EPTSGLD+ +A VM +R + +TGRTI+C+IHQPS +IFE FD+LL + + G +IY G
Sbjct: 137 EPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQ-GRVIYFG 194
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 236 bits (604), Expect = 1e-66
Identities = 159/636 (25%), Positives = 273/636 (42%), Gaps = 85/636 (13%)
Query: 145 RSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGH--GF 202
R + +L ++SG+ +P L ++G +GKTTL+ ALA R ++ SG + NG
Sbjct: 35 RPRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDA 94
Query: 203 KEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDE 262
KE SAYV Q D + +TVRE L
Sbjct: 95 KEM--RAISAYVQQDDLFIPTLTVREHL-------------------------------- 120
Query: 263 DLDIFMKSFALGGQKTS----LVVEYIMKILGLDTCADTLVGDE-MLKGISGGQKKRLTT 317
+F + + T V+ +++ LGL CA+T +G +KG+SGG++KRL
Sbjct: 121 ---MFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAF 177
Query: 318 G-ELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVI-SLLQPAPEAYELF 375
ELL P +LF DE ++GLDS Y +++ LK A G T+I ++ QP+ E +ELF
Sbjct: 178 ASELLTDP-PLLFCDEPTSGLDSFMAYSVVQVLKG--LAQKGKTIICTIHQPSSELFELF 234
Query: 376 DDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVTSKKDQEQYWSNPYLP 435
D +IL++EG++ Y G + FF+ +G CP+ N ADF +V + +P
Sbjct: 235 DKIILMAEGRVAYLGSPDQAVPFFSDLGHPCPENYNPADFYVQVLAV-----------IP 283
Query: 436 YRYISPGKFAEA-FHSYHTGKNLSEELAVPFDRRFNHPAALSTSKYGEKRSELLKTSFNW 494
+ E S+ + L + S+ E S+
Sbjct: 284 GSENESRERIEKICDSFAVSDIGRDMLVNTNLWSGKAGGLVKDSENMEGIG--YNASWWT 341
Query: 495 Q-LLLMKRNSFIYVFK--------FIQLLIVALITMTVFFRTTMHHKTIDDGGLYLGALY 545
Q L+KR S++ V + IQ ++ A++ ++ + K + + GAL+
Sbjct: 342 QFYALLKR-SWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGLTQKGVQN---INGALF 397
Query: 546 FSMVIILF-NGFTEVSMLVAKLPV-LYKHRDLHFYPSWVYTIPSWALSIPTSLIESGFWV 603
+ + F N F +++ A+LPV L + R + S + + A +P +I +
Sbjct: 398 LFLTNMTFQNVFPVINVFTAELPVFLRETRSGLYRVSAYFLAKTIA-ELPLFIILPALFT 456
Query: 604 AVTYYVIGYDPNVVRFSRQLLLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSFAMLVVMA 663
++TY++IG F L L + ++ +I + +A T G ++ +
Sbjct: 457 SITYWMIGLRSGATHFLTFLFLVTLVANVATSFGYLISCAFSSTSMALTVGPPFVIPFLL 516
Query: 664 LGGFIISRDSIPKWWIWGFWVSPLMYAQNAASVNEFLGHSWDKKAGNSN-----FSLGEA 718
GGF I+ DSIP ++ W ++S Y +N++ + + ++N S GE
Sbjct: 517 FGGFFINSDSIPVYFKWLSYLSWFRYGNEGLLINQWSDVD-NIECTSANTTGPCPSSGEV 575
Query: 719 ILRQRSLFPESYWYWIGVGAMLGYTLLFNALFTFFL 754
IL S + + +L + A F +
Sbjct: 576 ILETLSFRNADLYLDLIGLVILIFFFRLLAYFALRI 611
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 207 bits (530), Expect = 2e-61
Identities = 84/254 (33%), Positives = 117/254 (46%), Gaps = 64/254 (25%)
Query: 139 RIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYN 198
RSK+ IL D SG+++P + L+LG P SG +TLL ALA R ++ V G I YN
Sbjct: 11 FTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYN 70
Query: 199 GHGFKEF--VPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIA 256
G +KEF P YVS++D +TVRETLDFA +C+G E +
Sbjct: 71 GIPYKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCKG-------------NEFVR 117
Query: 257 GIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLT 316
GI GG++ + + A+ LV
Sbjct: 118 GIS--------------GGERKRV------------SIAEALV----------------- 134
Query: 317 TGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFD 376
A VL D + GLDSST +I+K ++ L TT +SL Q + E Y+LFD
Sbjct: 135 ------SRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFD 188
Query: 377 DVILLSEGQIVYQG 390
V++L EG+ +Y G
Sbjct: 189 KVLVLYEGRQIYYG 202
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 214 bits (548), Expect = 3e-59
Identities = 93/228 (40%), Positives = 140/228 (61%), Gaps = 7/228 (3%)
Query: 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGI-IEGDIYISGYPKRQET 899
R LL NV+G +PG L A++G SGAGKTTLM+ LA R G+ G + ++G P +
Sbjct: 37 RKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKE 96
Query: 900 FARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGA 959
IS Y +Q+D+ P LTV E L+F A LR+P + + +R V+EV++ + L +
Sbjct: 97 MRAISAYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANT 156
Query: 960 LIGLPG-INGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTG 1018
IG+PG + GLS +RKRL A EL+ +P ++F DEPTSGLD+ A V++ ++ + G
Sbjct: 157 RIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKG 216
Query: 1019 RTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGSKSCELIKYFE 1066
+TI+CTIHQPS ++FE FD+++ M G + Y G + + +F
Sbjct: 217 KTIICTIHQPSSELFELFDKIILMA-EGRVAYLGSPD----QAVPFFS 259
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 186 bits (474), Expect = 1e-53
Identities = 79/214 (36%), Positives = 129/214 (60%), Gaps = 10/214 (4%)
Query: 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGR-KTGGIIEGDIYISGYPKRQETF 900
++L +V+ G + A++G SG+GKTTL+D ++GR + GG G I +G P++ + F
Sbjct: 20 ARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQF 79
Query: 901 ARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMEL--VELTSLSG 958
+ Y Q+DI PGLTV E+L ++A LRLP + R E + L + LT + G
Sbjct: 80 QKCVAYVRQDDILLPGLTVRETLTYTAILRLP-RKSSDAIRKKRVEDVLLRDLALTRIGG 138
Query: 959 ALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTG 1018
L+ G+S +R+R++IAV+L+ +P ++ +DEPTSGLD+ A ++ T+ +
Sbjct: 139 NLVK-----GISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRN 193
Query: 1019 RTIVCTIHQPSIDIFESFDELLFMKRGGELIYAG 1052
R ++ TIHQP D+F FD +L + GE++Y+G
Sbjct: 194 RIVILTIHQPRSDLFRLFDRILLLSS-GEIVYSG 226
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 162 bits (411), Expect = 3e-44
Identities = 66/228 (28%), Positives = 104/228 (45%), Gaps = 13/228 (5%)
Query: 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYP--KRQETF 900
L V+ PG + L+G +GAGKTTL+ +LAG G+I + GY K
Sbjct: 19 TALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLK--PTSGEILVLGYDVVKEPAKV 76
Query: 901 ARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGAL 960
R GY Q P LTV E+L F A L S+ E E + +EE++EL L +
Sbjct: 77 RRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEER---IEELLELFGLEDKANKK 133
Query: 961 IGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRT 1020
+ LS ++RL+IA+ L+ +P ++ +DEPTSGLD + + +R + G
Sbjct: 134 VR-----TLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGV 188
Query: 1021 IVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGSKSCELIKYFEVE 1068
+ + E D ++ + G++I G + +E
Sbjct: 189 TILLSTHILEEAEELCDRVIILND-GKIIAEGTPEELKEKFGGKGVIE 235
|
Length = 293 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 172 bits (437), Expect = 2e-43
Identities = 146/581 (25%), Positives = 245/581 (42%), Gaps = 107/581 (18%)
Query: 147 KLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKE-F 205
K IL+++ G ++P LT L+G +GKTTLL LA R+ + G NG F
Sbjct: 775 KRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSF 834
Query: 206 VPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLD 265
R+ YV QQD + TVRE+L F+ A + + E ++
Sbjct: 835 --QRSIGYVQQQDLHLPTSTVRESLRFS----------------AYLRQPKSVSKSEKME 876
Query: 266 IFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTG-ELLVGP 324
VE ++K+L +++ AD +VG +G++ Q+KRLT G EL+ P
Sbjct: 877 Y---------------VEEVIKLLEMESYADAVVG-VPGEGLNVEQRKRLTIGVELVAKP 920
Query: 325 ARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVI-SLLQPAPEAYELFDDVILLSE 383
+LF+DE ++GLDS T + I K ++ G ++ ++ QP+ +E FD ++LL +
Sbjct: 921 KLLLFLDEPTSGLDSQTAWSICKLMRKLADH--GQAILCTIHQPSAILFEEFDRLLLLQK 978
Query: 384 G-QIVYQGP----RVSVLDFFASMGFS-CPKRKNVADFLQEVTSKKDQEQYWSNPYLPYR 437
G Q VY G +++++F G CP+ N A+++ EV
Sbjct: 979 GGQTVYFGDLGENSHTIINYFEKHGAPKCPEDANPAEWMLEV------------------ 1020
Query: 438 YISPGKFAEAFHSYH-TGKNLSEELAVP--FDRRFNHPAALSTSKYGEKRSELLKTSFNW 494
I A A YH +N SE AV DR + + S+ S +
Sbjct: 1021 -IGAAPGAHANQDYHEVWRNSSEYQAVKNELDRLEAELSKAEDDNDPDALSKY-AASLWY 1078
Query: 495 Q-LLLMKRN--------SFIYVFKFIQLLIVALITMTVFFRTTMHHKTIDDGGLYLGALY 545
Q L++ R ++Y KF + AL FF+ ++ + A++
Sbjct: 1079 QFKLVLWRTFQQYWRTPDYLYS-KFFLTIFAALFIGFTFFKVG---TSLQGLQNQMFAVF 1134
Query: 546 FSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFY---PSWVYTIPSWALS-----IPTSLI 597
M +LFN + LP RDL+ PS ++ ++ + IP +L+
Sbjct: 1135 --MATVLFNPLIQQY-----LPPFVAQRDLYEVRERPSRTFSWLAFIAAQITVEIPYNLV 1187
Query: 598 ESGFWVAVTYYVIGYDPNVVR----FSRQLLLY-----FFLHQMSIGLFRVIGSLGRNMI 648
+ + YY +G+ N + R +L + FFL+ ++G + S N
Sbjct: 1188 AGTIFFFIWYYPVGFYWNASKTGQVHERGVLFWLLSTMFFLYFSTLGQMVI--SFNPNAD 1245
Query: 649 VANTFGSFAMLVVMALGGFIISRDSIPKWWIWGFWVSPLMY 689
A S + ++ G + +P +WI+ + SP Y
Sbjct: 1246 NAAVLASLLFTMCLSFCGVLAPPSRMPGFWIFMYRCSPFTY 1286
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 171 bits (435), Expect = 3e-43
Identities = 152/568 (26%), Positives = 270/568 (47%), Gaps = 87/568 (15%)
Query: 147 KLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGR-LGHHLQVSGKITYNGHGFKEF 205
+L +L +++G RP LT L+G +GKTTL+ LAGR G +++ G I +G K+
Sbjct: 892 RLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIE--GDIRISGFPKKQE 949
Query: 206 VPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLD 265
R S Y Q D ++TVRE+L ++ + + E+++ EK+
Sbjct: 950 TFARISGYCEQNDIHSPQVTVRESLIYSAFLR-------LPKEVSKEEKM---------- 992
Query: 266 IFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPA 325
+F V+ +M+++ LD D +VG + G+S Q+KRLT LV
Sbjct: 993 MF--------------VDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANP 1038
Query: 326 RVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVI-SLLQPAPEAYELFDDVILLSEG 384
++FMDE ++GLD+ +++ ++++ G TV+ ++ QP+ + +E FD+++L+ G
Sbjct: 1039 SIIFMDEPTSGLDARAAAIVMRTVRNTVDT--GRTVVCTIHQPSIDIFEAFDELLLMKRG 1096
Query: 385 -QIVYQGP--RVS--VLDFFASM-GFSCPKRK-NVADFLQEVTSKKDQEQYWSNPYLPYR 437
Q++Y GP R S ++++F ++ G K K N A ++ EV+S + + +
Sbjct: 1097 GQVIYSGPLGRNSHKIIEYFEAIPGVPKIKEKYNPATWMLEVSSLAAEVKLGID------ 1150
Query: 438 YISPGKFAEAFHS---YHTGKNLSEELAVP--------FDRRFNHPAALSTSKYGEKRSE 486
FAE + S Y K L +EL+ P F ++ S S +G+ +S
Sbjct: 1151 ------FAEHYKSSSLYQRNKALVKELSTPPPGASDLYFATQY------SQSTWGQFKSC 1198
Query: 487 LLKTSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHKTIDDGGLYLGALYF 546
L K Q R+ + +F L AL+ T+F++ +D + +GA+Y
Sbjct: 1199 LWK-----QWWTYWRSPDYNLVRFFFTLAAALMVGTIFWKVGTKRSNANDLTMVIGAMYA 1253
Query: 547 SMVIILFNGFTEVSMLVA-KLPVLYKHRDLHFYPSWVYTIPSWALSIPTSLIESGFWVAV 605
+++ + N + V +VA + V Y+ R Y + Y I IP LI++ ++ +
Sbjct: 1254 AVLFVGINNCSTVQPMVAVERTVFYRERAAGMYSALPYAIAQVVCEIPYVLIQTTYYTLI 1313
Query: 606 TYYVIGYDPNVVRFSRQLLLYFFLHQMSIGLFRVIG----SLGRNMIVANTFGSFAMLVV 661
Y ++ ++ +F ++F+ S F G SL N VA F + +
Sbjct: 1314 VYAMVAFEWTAAKF----FWFYFISFFSFLYFTYYGMMTVSLTPNQQVAAIFAAAFYGLF 1369
Query: 662 MALGGFIISRDSIPKWWIWGFWVSPLMY 689
GF I R IPKWW+W +W+ P+ +
Sbjct: 1370 NLFSGFFIPRPKIPKWWVWYYWICPVAW 1397
|
Length = 1470 |
| >gnl|CDD|216273 pfam01061, ABC2_membrane, ABC-2 type transporter | Back alignment and domain information |
|---|
Score = 155 bits (395), Expect = 4e-43
Identities = 58/216 (26%), Positives = 100/216 (46%), Gaps = 8/216 (3%)
Query: 486 ELLKTSFNWQLLLMKRNSF-IYVFKFIQLLIVALITMTVFFRTTMHHKTIDDGGLYLGAL 544
LK + L R+ +++ IQ L++AL+ TVF T G G L
Sbjct: 1 TQLKALLKREFLRRWRDPSLGLLWRLIQPLLMALVFGTVFGNLD----TSLGGLNRPGLL 56
Query: 545 YFSMVIILFNGFTEVSMLVAK-LPVLYKHRDLHFYPSWVYTIPSWALSIPTSLIESGFWV 603
+FS++ F+ T +S + + VL + Y Y + + +P SL+++ ++
Sbjct: 57 FFSILFNAFSSLTGISPVFIRERGVLERELASPLYSPSAYVLAKILVELPISLLQAIIFL 116
Query: 604 AVTYYVIGYDPNVVRFSRQLLLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSFAMLVVMA 663
+ Y+++G + RF LL+ + GL I +L + A+ G +L ++
Sbjct: 117 LIVYFMVGLPVS--RFFLFLLVLLLTALAASGLGLFIAALAPSFEDASQIGPLLLLPLLL 174
Query: 664 LGGFIISRDSIPKWWIWGFWVSPLMYAQNAASVNEF 699
L GF I DS+P W W ++++PL YA A NEF
Sbjct: 175 LSGFFIPVDSMPGWLQWIYYLNPLTYAIEALRANEF 210
|
Length = 210 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 156 bits (395), Expect = 2e-39
Identities = 85/227 (37%), Positives = 132/227 (58%), Gaps = 6/227 (2%)
Query: 844 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARI 903
+L VTG PG + A++G SG+GK+TL++ LAGR G G I + ++ R
Sbjct: 83 ILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRT 142
Query: 904 SGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGL 963
G+ Q+DI P LTV E+L+F + LRLP + + + E V+ + LT +IG
Sbjct: 143 -GFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGN 201
Query: 964 PGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVC 1023
I G+S +RKR++IA E++ NPS++ +DEPTSGLDA AA ++ T+ ++ G+TIV
Sbjct: 202 SFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVT 261
Query: 1024 TIHQPSIDIFESFDELLFMKRGGELIYAGPLGSKSCELIKYFEVESF 1070
++HQPS +++ FD +L + G L + K + + YFE F
Sbjct: 262 SMHQPSSRVYQMFDSVLVLSEGRCLFF-----GKGSDAMAYFESVGF 303
|
Length = 659 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 155 bits (394), Expect = 3e-39
Identities = 147/559 (26%), Positives = 262/559 (46%), Gaps = 70/559 (12%)
Query: 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPP 208
TIL+ ++G+ P + +LGP SGK+TLL ALAGR+ + +G I N + +
Sbjct: 82 TILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGN-NFTGTILANNRKPTKQILK 140
Query: 209 RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFM 268
RT +V+Q D +TVRETL F S + L ++EKI
Sbjct: 141 RT-GFVTQDDILYPHLTVRETLVFC-------SLLRLPKSLTKQEKI------------- 179
Query: 269 KSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTG-ELLVGPARV 327
LV E ++ LGL C +T++G+ ++GISGG++KR++ E+L+ P+ +
Sbjct: 180 -----------LVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPS-L 227
Query: 328 LFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVI-SLLQPAPEAYELFDDVILLSEGQI 386
L +DE ++GLD++ Y+++ L + A G T++ S+ QP+ Y++FD V++LSEG+
Sbjct: 228 LILDEPTSGLDATAAYRLVLTL--GSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRC 285
Query: 387 VYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVT---------SKKDQEQYWSNPYLPYR 437
++ G + +F S+GFS N ADFL ++ S++++ + Y
Sbjct: 286 LFFGKGSDAMAYFESVGFSPSFPMNPADFLLDLANGVCQTDGVSEREKPNVKQSLVASYN 345
Query: 438 YISPGKFAEAFHSYHTGKNLSEELAVPFDRRFNHPAALSTSKYGEKRSELLKTSFNWQLL 497
+ K A H + + + + +S S + + S LL+ + L
Sbjct: 346 TLLAPKVKAAIEMSHFPQANARFVGSASTKEHRSSDRISISTWFNQFSILLQ-----RSL 400
Query: 498 LMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHKTIDDGGLYLGALYF-SMVIILFNGF 556
+++ + Q++ AL+ +++ H D LG L+F S+ +F F
Sbjct: 401 KERKHESFNTLRVFQVIAAALLAGLMWW-----HSDFRDVQDRLGLLFFISIFWGVFPSF 455
Query: 557 TEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALS-----IPTSLIESGFWVAVTYYVIG 611
V + + + K R S +YT+ S+ ++ +P LI ++ VTY++ G
Sbjct: 456 NSVFVFPQERAIFVKER-----ASGMYTLSSYFMARIVGDLPMELILPTIFLTVTYWMAG 510
Query: 612 YDPNVVRFSRQLLLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSFAMLVVMALGGFIISR 671
P + F LL+ +S GL +G+ + A+T + ML + GGF + +
Sbjct: 511 LKPELGAFLLTLLVLLGYVLVSQGLGLALGAAIMDAKKASTIVTVTMLAFVLTGGFYVHK 570
Query: 672 DSIPKWWIWGFWVSPLMYA 690
+P W ++S Y+
Sbjct: 571 --LPSCMAWIKYISTTFYS 587
|
Length = 659 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 143 bits (364), Expect = 1e-38
Identities = 72/250 (28%), Positives = 117/250 (46%), Gaps = 38/250 (15%)
Query: 142 RGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHG 201
+ IL+D+S + ++ +LG SGKTTLL A++GR+ SG+I +NG
Sbjct: 14 KNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQP 73
Query: 202 FKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPD 261
K + AYV Q D + +TVRETL +
Sbjct: 74 RKPDQFQKCVAYVRQDDILLPGLTVRETLTYTAIL------------------------- 108
Query: 262 EDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELL 321
L + + + + ++ + L A T +G ++KGISGG+++R++ L
Sbjct: 109 ----------RLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQL 158
Query: 322 VGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVI-SLLQPAPEAYELFDDVIL 380
+ +VL +DE ++GLDS T ++ L R VI ++ QP + + LFD ++L
Sbjct: 159 LWDPKVLILDEPTSGLDSFTALNLVSTLSQLARR--NRIVILTIHQPRSDLFRLFDRILL 216
Query: 381 LSEGQIVYQG 390
LS G+IVY G
Sbjct: 217 LSSGEIVYSG 226
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 130 bits (328), Expect = 3e-33
Identities = 85/309 (27%), Positives = 142/309 (45%), Gaps = 56/309 (18%)
Query: 130 MTEAL-LRQLR-IYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGH 187
M E + +R L Y G++ T LD +S + P + LLGP +GKTTLL LAG L
Sbjct: 1 MIEVIEVRNLTKKYGGDK---TALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLL-- 55
Query: 188 HLQVSGKITYNGHGFKEFVP--PRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDM 245
SG+I G+ + R YV Q+ E+TVRE L+F + G+ +
Sbjct: 56 -KPTSGEILVLGYDVVKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEA- 113
Query: 246 ITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLK 305
E+I E ++++ GL+ A+ V +
Sbjct: 114 ------EERI---------------------------EELLELFGLEDKANKKV-----R 135
Query: 306 GISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVIS-- 363
+SGG K+RL+ L+ +L +DE ++GLD + +I + L+ + T ++S
Sbjct: 136 TLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTH 195
Query: 364 LLQPAPEAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSC--PKRKNVADFLQEVTS 421
+L+ EA EL D VI+L++G+I+ +G + + F G P+R +A+ L+ +
Sbjct: 196 ILE---EAEELCDRVIILNDGKIIAEGTPEELKEKFGGKGVIELEPERLELAELLEGLKL 252
Query: 422 KKDQEQYWS 430
K +E+
Sbjct: 253 VKGEEELAE 261
|
Length = 293 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 122 bits (309), Expect = 1e-31
Identities = 59/218 (27%), Positives = 107/218 (49%), Gaps = 36/218 (16%)
Query: 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGI-IEGDIYISGYPKRQ 897
++ +L + +G +PG + ++G G+G +TL+ LA R G + +EGDI+ +G P ++
Sbjct: 17 RSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKE 76
Query: 898 --ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTS 955
E + Y + D+H P LTV E+L F+ +
Sbjct: 77 FAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCK------------------------- 111
Query: 956 LSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIV 1015
G + G+S +RKR++IA LV+ S++ D T GLD+ A +++ +R +
Sbjct: 112 ------GNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMA 165
Query: 1016 N-TGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAG 1052
+ T +++Q S +I++ FD++L + G IY G
Sbjct: 166 DVLKTTTFVSLYQASDEIYDLFDKVLVL-YEGRQIYYG 202
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 121 bits (307), Expect = 4e-31
Identities = 57/184 (30%), Positives = 92/184 (50%), Gaps = 17/184 (9%)
Query: 847 NVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGYPKRQETFA--R 902
+++ G + L+G +GAGKTT + +L G R T G YI+GY R + A +
Sbjct: 20 DLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSG----TAYINGYSIRTDRKAARQ 75
Query: 903 ISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIG 962
GYC Q D LTV E L F A L+ + + VE ++ ++ LT +
Sbjct: 76 SLGYCPQFDALFDELTVREHLRFYARLK---GLPKSEIKEEVELLLRVLGLTDKANKRAR 132
Query: 963 LPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIV 1022
LS +++L++A+ L+ PS++ +DEPTSGLD + + + + GR+I+
Sbjct: 133 -----TLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVR-KGRSII 186
Query: 1023 CTIH 1026
T H
Sbjct: 187 LTTH 190
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|219810 pfam08370, PDR_assoc, Plant PDR ABC transporter associated | Back alignment and domain information |
|---|
Score = 110 bits (278), Expect = 3e-29
Identities = 43/65 (66%), Positives = 52/65 (80%)
Query: 704 WDKKAGNSNFSLGEAILRQRSLFPESYWYWIGVGAMLGYTLLFNALFTFFLSYLNPLGKQ 763
W K SN +LGEA+L+ R LF E+YWYWIGVGA+LG+T+LFN LFT L+YLNPLGK
Sbjct: 1 WSKPFSGSNETLGEAVLKSRGLFTEAYWYWIGVGALLGFTILFNILFTLALTYLNPLGKS 60
Query: 764 QAVVS 768
QA+VS
Sbjct: 61 QAIVS 65
|
This domain is found on the C-terminus of ABC-2 type transporter domains (pfam01061). It seems to be associated with the plant pleiotropic drug resistance (PDR) protein family of ABC transporters. Like in yeast, plant PDR ABC transporters may also play a role in the transport of antifungal agents (pfam06422). The PDR family is characterized by a configuration in which the ABC domain is nearer the N-terminus of the protein than the transmembrane domain. Length = 65 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 113 bits (285), Expect = 2e-28
Identities = 59/211 (27%), Positives = 97/211 (45%), Gaps = 23/211 (10%)
Query: 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQET--- 899
L +++ + G +VG +G+GK+TL+ +L G G G++ + G + +
Sbjct: 15 PALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLL--GPTSGEVLVDGKDLTKLSLKE 72
Query: 900 FARISGYCEQNDIHSP-----GLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELT 954
R G QN P G TV E + F E E+E +R VEE +ELV L
Sbjct: 73 LRRKVGLVFQN----PDDQFFGPTVEEEVAFGLENLGLPEEEIE-ER--VEEALELVGLE 125
Query: 955 SLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNI 1014
L LS Q++R+ IA L +P I+ +DEPT+GLD ++ ++ +
Sbjct: 126 GLRDRSP-----FTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKL 180
Query: 1015 VNTGRTIVCTIHQPSIDIFESFDELLFMKRG 1045
G+TI+ H + E D ++ ++ G
Sbjct: 181 KAEGKTIIIVTHDLD-LLLELADRVIVLEDG 210
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 108 bits (272), Expect = 1e-26
Identities = 70/215 (32%), Positives = 106/215 (49%), Gaps = 16/215 (7%)
Query: 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYP--KRQ 897
+ + L V+ PG+ L+G +GAGKTTLM +LA G I I G K+
Sbjct: 11 GKKRALDGVSLTLGPGM-YGLLGPNGAGKTTLMRILATLTPPS--SGTIRIDGQDVLKQP 67
Query: 898 ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLS 957
+ R GY Q P TV E L + AWL+ I + +A V+EV+ELV L +
Sbjct: 68 QKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLK---GIPSKEVKARVDEVLELVNLGDRA 124
Query: 958 GALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNT 1017
IG LS R+R+ IA LV +PSI+ +DEPT+GLD I R + + +
Sbjct: 125 KKKIG-----SLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDP-EERIRFRNLLSELGE 178
Query: 1018 GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAG 1052
R ++ + H D+ +++ + G+L++ G
Sbjct: 179 DRIVILSTHIVE-DVESLCNQVAVLN-KGKLVFEG 211
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 106 bits (266), Expect = 3e-25
Identities = 59/221 (26%), Positives = 105/221 (47%), Gaps = 26/221 (11%)
Query: 844 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISG-----YPKRQE 898
+L +++ + G +T ++G +G+GK+TL+ LAG G++ + G ++
Sbjct: 17 ILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLK--PKSGEVLLDGKDIASLSPKE- 73
Query: 899 TFARISGYCEQNDIHSPGLTVLESLLFSA-----WLRLPSEIELETQRAFVEEVMELVEL 953
A+ Y Q+ GLTV E +L PS+ + E VEE +EL+ L
Sbjct: 74 -LAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEE----IVEEALELLGL 128
Query: 954 TSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRN 1013
L+ ++ LS +R+R+ IA L I+ +DEPTS LD V+ +R+
Sbjct: 129 EHLADR-----PVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRD 183
Query: 1014 IV-NTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGP 1053
+ G T+V +H ++ + D L+ +K G+++ G
Sbjct: 184 LNREKGLTVVMVLHDLNLAARYA-DHLILLKD-GKIVAQGT 222
|
Length = 258 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 104 bits (262), Expect = 6e-25
Identities = 59/234 (25%), Positives = 109/234 (46%), Gaps = 27/234 (11%)
Query: 830 VELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGII---EG 886
+E++ V +L +++ + G +TAL+G +GAGK+TL+ + G ++ G
Sbjct: 5 IEVENLTVSYGNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILG-----LLKPSSG 59
Query: 887 DIYISGYPKRQETFARISGYCEQNDIHSPG--LTVLESLLFSA-----WLRLPSEIELET 939
+I I G P R+ GY Q +TV + +L W R ++ +
Sbjct: 60 EIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKD--- 116
Query: 940 QRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGL 999
+ V+E +E V + L IG LS Q++R+ +A L NP ++ +DEP +G+
Sbjct: 117 -KEKVDEALERVGMEDLRDRQIG-----ELSGGQKQRVLLARALAQNPDLLLLDEPFTGV 170
Query: 1000 DARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGP 1053
D + ++ + G+T++ H + + FD ++ + R LI +GP
Sbjct: 171 DVAGQKEIYDLLKELRQEGKTVLMVTHDLGL-VMAYFDRVICLNR--HLIASGP 221
|
Length = 254 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 103 bits (259), Expect = 7e-25
Identities = 63/216 (29%), Positives = 106/216 (49%), Gaps = 29/216 (13%)
Query: 847 NVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGYPKRQETFARIS 904
+V+ +PG A+VG +GAGK+TL+ + G + T G I + G P +E RI
Sbjct: 17 DVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPT----SGSIRVFGKPLEKER-KRI- 70
Query: 905 GYCEQN---DIHSPGLTVLESLL-----FSAWLRLPSEIELETQRAFVEEVMELVELTSL 956
GY Q D P ++V + +L R S+ +A V+E +E V L+ L
Sbjct: 71 GYVPQRRSIDRDFP-ISVRDVVLMGLYGHKGLFRRLSKA----DKAKVDEALERVGLSEL 125
Query: 957 SGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVN 1016
+ IG LS Q++R+ +A LV +P ++ +DEP +G+D + + +R +
Sbjct: 126 ADRQIGE-----LSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRR 180
Query: 1017 TGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAG 1052
G TI+ H + + E FD +L + R ++ +G
Sbjct: 181 EGMTILVVTHDLGL-VLEYFDRVLLLNR--TVVASG 213
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 5e-24
Identities = 38/95 (40%), Positives = 55/95 (57%), Gaps = 1/95 (1%)
Query: 145 RSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKE 204
+S +L ++SG +P LT ++GP +GK+TLL ALAGR L VSG++ NG +
Sbjct: 19 KSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRR-TGLGVSGEVLINGRPLDK 77
Query: 205 FVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGV 239
+ YV Q D +TVRETL FA + +G+
Sbjct: 78 RSFRKIIGYVPQDDILHPTLTVRETLMFAAKLRGL 112
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 97.3 bits (243), Expect = 2e-23
Identities = 49/206 (23%), Positives = 79/206 (38%), Gaps = 65/206 (31%)
Query: 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ET 899
L NV+ + G + ALVG +G+GK+TL+ +AG G+I I G + E
Sbjct: 13 TALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLK--PTSGEILIDGKDIAKLPLEE 70
Query: 900 FARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGA 959
R GY Q LSG
Sbjct: 71 LRRRIGYVPQ----------------------------------------------LSGG 84
Query: 960 LIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGR 1019
+++ R+ +A L+ NP ++ +DEPTSGLD + ++ +R + GR
Sbjct: 85 ------------QRQ-RVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGR 131
Query: 1020 TIVCTIHQPSIDIFESFDELLFMKRG 1045
T++ H P + D ++ +K G
Sbjct: 132 TVIIVTHDPE-LAELAADRVIVLKDG 156
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 97.6 bits (244), Expect = 4e-23
Identities = 38/88 (43%), Positives = 62/88 (70%), Gaps = 3/88 (3%)
Query: 304 LKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVI- 362
L+G+SGG++KR++ LV +LF+DE ++GLDSS+ Q++ L+ A G T+I
Sbjct: 109 LRGLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRL--ADTGRTIIC 166
Query: 363 SLLQPAPEAYELFDDVILLSEGQIVYQG 390
S+ QP+ E +ELFD ++LLS+G+++Y G
Sbjct: 167 SIHQPSSEIFELFDKLLLLSQGRVIYFG 194
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 95.5 bits (239), Expect = 1e-22
Identities = 46/203 (22%), Positives = 77/203 (37%), Gaps = 53/203 (26%)
Query: 847 NVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGYP--KRQETFAR 902
+++ G + L+G +GAGKTTL+ ++ G + G+I + G K E R
Sbjct: 18 DISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPD----SGEIKVLGKDIKKEPEEVKR 73
Query: 903 ISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIG 962
GY + LTV E+L S G
Sbjct: 74 RIGYLPEEPSLYENLTVRENLKLS------------------------------GG---- 99
Query: 963 LPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIV 1022
++RL +A L+ +P ++ +DEPTSGLD + +R + G+TI+
Sbjct: 100 ----------MKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTIL 149
Query: 1023 CTIHQPSIDIFESFDELLFMKRG 1045
+ H + D + + G
Sbjct: 150 LSSHILE-EAERLCDRVAILNNG 171
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 94.0 bits (235), Expect = 5e-22
Identities = 51/212 (24%), Positives = 90/212 (42%), Gaps = 46/212 (21%)
Query: 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG-RKTGGIIEGDIYISGYPKRQETFA 901
+L +++ + G + ++G +GAGK+TL+ LAG K G+I + G
Sbjct: 13 TVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLK---PSSGEILLDGKD------- 62
Query: 902 RISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALI 961
L S EL + A+V + +EL+ L L+
Sbjct: 63 ---------------------------LASLSPKELARKIAYVPQALELLGLAHLADR-- 93
Query: 962 GLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVN-TGRT 1020
N LS +R+R+ +A L P I+ +DEPTS LD ++ +R + G+T
Sbjct: 94 ---PFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKT 150
Query: 1021 IVCTIHQPSIDIFESFDELLFMKRGGELIYAG 1052
+V +H ++ D ++ +K G ++ G
Sbjct: 151 VVMVLHDLNL-AARYADRVILLK-DGRIVAQG 180
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 95.8 bits (239), Expect = 6e-22
Identities = 57/225 (25%), Positives = 97/225 (43%), Gaps = 24/225 (10%)
Query: 838 LEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIE---GDIYISGYP 894
R L +V+ G L+G +G+GK+TL+ +L G +++ G++ + G
Sbjct: 13 YPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNG-----LLKPTSGEVLVDGLD 67
Query: 895 KRQET----FARISGYCEQN-DIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVME 949
E + G QN D G TV + + F L + E V E +E
Sbjct: 68 TSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGL-ENLG--LPREEIEERVAEALE 124
Query: 950 LVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMR 1009
LV L L LS Q++R+ IA L P I+ +DEPT+GLD + ++
Sbjct: 125 LVGLEELLDRPP-----FNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLE 179
Query: 1010 TVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGP 1053
++ + G+TI+ H + E D ++ + G+++ G
Sbjct: 180 LLKKLKEEGGKTIIIVTHDLE-LVLEYADRVVVL-DDGKILADGD 222
|
Length = 235 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 94.5 bits (236), Expect = 1e-21
Identities = 65/222 (29%), Positives = 111/222 (50%), Gaps = 19/222 (8%)
Query: 833 KQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGG--IIEG-D 887
K G+ ++++ L +V G A+VG SG+GK+TL+++L G + T G +I G D
Sbjct: 9 KIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKD 68
Query: 888 IYISGYPKRQETFARISGYCEQNDIHS--PGLTVLESLLFSAWLRLPSEIELETQRAFVE 945
+ + + + G+ QN + P LTVLE++ LP I ++
Sbjct: 69 LTKLSEKELAKLRRKKIGFVFQN--FNLLPDLTVLENVE------LPLLIAGKSAGRRKR 120
Query: 946 EVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAA 1005
EL+E+ L L+ + LS Q++R+ IA L+ NP I+ DEPT LD++ A
Sbjct: 121 AAEELLEVLGLEDRLLKKK-PSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAK 179
Query: 1006 IVMRTVRNIV-NTGRTIVCTIHQPSIDIFESFDELLFMKRGG 1046
V+ +R + G+TI+ H P ++ + D ++ +K G
Sbjct: 180 EVLELLRELNKERGKTIIMVTHDP--ELAKYADRVIELKDGK 219
|
Length = 226 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 94.6 bits (236), Expect = 2e-21
Identities = 60/225 (26%), Positives = 99/225 (44%), Gaps = 29/225 (12%)
Query: 845 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARI- 903
L +V+ + PG AL+G SGAGK+TL+ L G G + I G + +
Sbjct: 17 LKDVSLSINPGEFVALIGPSGAGKSTLLRCLNG--LVEPTSGSVLIDGTDINKLKGKALR 74
Query: 904 -----SGYCEQNDIHSPGLTVLESLL---------FSAWLRLPSEIELETQRAFVEEVME 949
G Q L+VLE++L + + L + E QRA +E
Sbjct: 75 QLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEE--KQRAL--AALE 130
Query: 950 LVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMR 1009
V L + LS Q++R+ IA L+ P ++ DEP + LD ++ VM
Sbjct: 131 RVGLLDKAYQRADQ-----LSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMD 185
Query: 1010 TVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGP 1053
++ I G T++ ++HQ + E D ++ +K G +++ GP
Sbjct: 186 LLKRINREEGITVIVSLHQVDL-AREYADRIVGLKD-GRIVFDGP 228
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 92.1 bits (230), Expect = 9e-21
Identities = 56/193 (29%), Positives = 91/193 (47%), Gaps = 30/193 (15%)
Query: 847 NVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGG-IIEGDIYISGYPKRQ------ 897
+V+ + RPG + L+G +GAGKTTL ++++G R T G ++ I+G P +
Sbjct: 18 DVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGI 77
Query: 898 -ETFARISGYCEQNDIHSPGLTVLESLL-------FSAWLRLPSEIELETQRAFVEEVME 949
TF + P LTVLE+++ S L + E R EE++E
Sbjct: 78 GRTFQIPRLF--------PELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLE 129
Query: 950 LVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMR 1009
V L L+ G LS Q++RL IA L +P ++ +DEP +GL+ +
Sbjct: 130 RVGLADLADRPAGE-----LSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAE 184
Query: 1010 TVRNIVNTGRTIV 1022
+R + G T++
Sbjct: 185 LIRELRERGITVL 197
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 90.3 bits (225), Expect = 1e-20
Identities = 49/209 (23%), Positives = 80/209 (38%), Gaps = 51/209 (24%)
Query: 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYP-----KRQ 897
+L +V+ G + AL+G SG+GK+TL+ +AG + G I I G
Sbjct: 14 TVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEE--PDSGSILIDGEDLTDLEDEL 71
Query: 898 ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLS 957
R G Q+ P LTVLE++
Sbjct: 72 PPLRRRIGMVFQDFALFPHLTVLENIAL-------------------------------- 99
Query: 958 GALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIV-N 1016
GLS Q++R+ +A L +P ++ +DEPTS LD V ++++
Sbjct: 100 ----------GLSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQ 149
Query: 1017 TGRTIVCTIHQPSIDIFESFDELLFMKRG 1045
G T+V H + D ++ ++ G
Sbjct: 150 LGITVVLVTHDLD-EAARLADRVVVLRDG 177
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 91.0 bits (227), Expect = 1e-20
Identities = 61/209 (29%), Positives = 94/209 (44%), Gaps = 21/209 (10%)
Query: 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISG-----YPKRQ 897
+ L +++ PG AL+G SG GKTTL+ ++AG + G+I I G P +
Sbjct: 14 RALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLER--PDSGEILIDGRDVTGVPPER 71
Query: 898 ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLS 957
R G Q+ P LTV E++ F LR + RA V E++ELV L L
Sbjct: 72 ----RNIGMVFQDYALFPHLTVAENIAFGLKLRGVPK---AEIRARVRELLELVGLEGLL 124
Query: 958 GALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNI-VN 1016
+ LS Q++R+ +A L PS++ +DEP S LDA+ + ++ +
Sbjct: 125 NRYP-----HELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQRE 179
Query: 1017 TGRTIVCTIHQPSIDIFESFDELLFMKRG 1045
G T + H + D + M G
Sbjct: 180 LGITTIYVTHDQE-EALALADRIAVMNEG 207
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 91.0 bits (227), Expect = 1e-20
Identities = 63/214 (29%), Positives = 103/214 (48%), Gaps = 22/214 (10%)
Query: 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIE-GDIYISGYPKRQ 897
++Q L V+ + G A+VG SG+GK+TL+++L G R T G + IS +++
Sbjct: 16 KVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKE 75
Query: 898 ETFAR---ISGYCEQNDIHS--PGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVE 952
R I G+ Q+ + P LT LE++ L + + + +R EE++E V
Sbjct: 76 LAAFRRRHI-GFVFQS--FNLLPDLTALENVELPL---LLAGVPKKERRERAEELLERVG 129
Query: 953 LTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVR 1012
L + LS Q++R+ IA L +P I+ DEPT LD+ VM +R
Sbjct: 130 LGDRLNHYP-----SELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLR 184
Query: 1013 NIV-NTGRTIVCTIHQPSIDIFESFDELLFMKRG 1045
+ G TIV H P ++ E D ++ ++ G
Sbjct: 185 ELNKEAGTTIVVVTHDP--ELAEYADRIIELRDG 216
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 90.2 bits (225), Expect = 2e-20
Identities = 66/258 (25%), Positives = 105/258 (40%), Gaps = 55/258 (21%)
Query: 135 LRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGK 194
L+ L + ++ LDD+S I+ L++GP SGK+TLL L G LG SG+
Sbjct: 2 LKNLSFSYPDGAR-PALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLG---PTSGE 57
Query: 195 ITYNGHGFKEFVPP---RTSAYVSQQ-DWQVAEMTVRETLDFAGQCQGVGSKYDMITELA 250
+ +G + R V Q D Q TV E + F
Sbjct: 58 VLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGL---------------- 101
Query: 251 RREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGG 310
+ G+ +E + VE ++++GL+ D L SGG
Sbjct: 102 ---ENLGLPEEEIEER---------------VEEALELVGLEGLRDRSP--FTL---SGG 138
Query: 311 QKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISL---LQP 367
QK+R+ +L +L +DE + GLD + ++++ LK G T+I + L
Sbjct: 139 QKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAE--GKTIIIVTHDLD- 195
Query: 368 APEAYELFDDVILLSEGQ 385
EL D VI+L +G+
Sbjct: 196 --LLLELADRVIVLEDGK 211
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 91.2 bits (227), Expect = 2e-20
Identities = 58/228 (25%), Positives = 97/228 (42%), Gaps = 31/228 (13%)
Query: 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE---- 898
Q L N+ PG A++G SGAGK+TL+ + G I + G +
Sbjct: 16 QALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVE--PSSGSILLEGTDITKLRGKK 73
Query: 899 --TFARISGYCEQNDIHSPGLTVLESLLF----------SAWLRLPSEIELETQRAFVEE 946
R G Q+ LTVLE++L S R E + +RA
Sbjct: 74 LRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEE---DKERAL--S 128
Query: 947 VMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAI 1006
+E V L + + LS Q++R+ IA L P ++ DEP + LD + +
Sbjct: 129 ALERVGLADKA-----YQRADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQ 183
Query: 1007 VMRTVRNI-VNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGP 1053
VM ++ I G T++ +HQ +D+ + + + + + GE+++ G
Sbjct: 184 VMDYLKRINKEDGITVIINLHQ--VDLAKKYADRIVGLKAGEIVFDGA 229
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 93.1 bits (232), Expect = 3e-19
Identities = 62/214 (28%), Positives = 97/214 (45%), Gaps = 30/214 (14%)
Query: 844 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETF 900
+L +++ PG A+VG SG+GK+TL+ +L G +G I + G +
Sbjct: 488 VLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYK--PQQGRILLDGVDLNDIDLASL 545
Query: 901 ARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGAL 960
R GY Q+ LFS +R I L A EE++E +L +
Sbjct: 546 RRQVGYVLQDP-----------FLFSGSIR--ENIALGNPEATDEEIIEAAQLAGAHEFI 592
Query: 961 IGLP---------GINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTV 1011
LP G LS QR+RL +A L++ P I+ +DE TS LD AI+++ +
Sbjct: 593 ENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNL 652
Query: 1012 RNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 1045
I GRT++ H+ S S D ++ + +G
Sbjct: 653 LQI-LQGRTVIIIAHRLS--TIRSADRIIVLDQG 683
|
Length = 709 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 87.1 bits (216), Expect = 3e-19
Identities = 52/190 (27%), Positives = 80/190 (42%), Gaps = 12/190 (6%)
Query: 845 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKT---GGIIEGDIYISGYPKRQETFA 901
L + + G LVG SGAGK+TL+ ++ + G I +S R +
Sbjct: 17 LDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYL 76
Query: 902 RIS-GYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGAL 960
R G Q+ P V E++ F E+ R + V +EL LS
Sbjct: 77 RRKIGVVFQDFRLLPDRNVYENVAF------ALEVTGVPPREIRKRVPAALELVGLSHKH 130
Query: 961 IGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRT 1020
LP LS +++R+ IA +V +P+I+ DEPT LD +M ++ I G T
Sbjct: 131 RALP--AELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTT 188
Query: 1021 IVCTIHQPSI 1030
+V H +
Sbjct: 189 VVVATHAKEL 198
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 85.0 bits (211), Expect = 1e-18
Identities = 56/213 (26%), Positives = 97/213 (45%), Gaps = 36/213 (16%)
Query: 844 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGYPKRQETFA 901
+L +++ G + AL G +GAGKTTL +LAG +++ G I + +R+++
Sbjct: 15 ILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKS-- 72
Query: 902 RISGYCEQN-DIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVEL------- 953
GY Q+ D +V E LL E++ ++A E V++ ++L
Sbjct: 73 --IGYVMQDVDYQLFTDSVREELLLGL-----KELDAGNEQA--ETVLKDLDLYALKERH 123
Query: 954 -TSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVR 1012
SLSG Q++RL IA L++ ++ DEPTSGLD + V +R
Sbjct: 124 PLSLSGG-------------QKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIR 170
Query: 1013 NIVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 1045
+ G+ ++ H + + D +L + G
Sbjct: 171 ELAAQGKAVIVITHDYEF-LAKVCDRVLLLANG 202
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 90.4 bits (225), Expect = 1e-18
Identities = 58/228 (25%), Positives = 103/228 (45%), Gaps = 26/228 (11%)
Query: 829 PVELKQEGVL---EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIE 885
P+E+ E + D L ++ + G LTALVG SGAGK+TL+++L G +
Sbjct: 318 PIEISLENLSFRYPDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAP--TQ 375
Query: 886 GDIYISGYPKR---QETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRA 942
G+I ++G R E + + + QN G T+ E++L + EI
Sbjct: 376 GEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAG-TIRENILLARPDASDEEII------ 428
Query: 943 FVEEVMELVELTSLSGALIGLPGI-----NGLSTEQRKRLTIAVELVANPSIVFMDEPTS 997
++ L GL + GLS Q +RL +A L++ S++ +DEPT+
Sbjct: 429 ---AALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTA 485
Query: 998 GLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 1045
LDA I+++ ++ + +T++ H+ D ++ + G
Sbjct: 486 HLDAETEQIILQALQEL-AKQKTVLVITHRLE--DAADADRIVVLDNG 530
|
Length = 559 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 83.6 bits (208), Expect = 2e-18
Identities = 55/212 (25%), Positives = 87/212 (41%), Gaps = 61/212 (28%)
Query: 837 VLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKR 896
VL+D V++T +PG A+VG SG+GK+TL+ +L G+I I G R
Sbjct: 17 VLKD-----VSLT--IKPGEKVAIVGPSGSGKSTLLKLLLRLYD--PTSGEILIDGVDLR 67
Query: 897 Q---ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVEL 953
E+ + Y Q + LFS +R E
Sbjct: 68 DLDLESLRKNIAYVPQ-----------DPFLFSGTIR---------------------E- 94
Query: 954 TSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRN 1013
N LS QR+R+ IA L+ +P I+ +DE TS LD A+++ +R
Sbjct: 95 -------------NILSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRA 141
Query: 1014 IVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 1045
+ G+T++ H+ S D ++ + G
Sbjct: 142 LAK-GKTVIVIAHRLS--TIRDADRIIVLDDG 170
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 83.6 bits (207), Expect = 3e-18
Identities = 49/194 (25%), Positives = 82/194 (42%), Gaps = 16/194 (8%)
Query: 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGYPKR 896
++L + A G + AL+G +GAGK+TL+ L G R G + D Y ++
Sbjct: 2 PGGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRK 61
Query: 897 QETFARIS-GYCEQN---DIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVE 952
R G Q+ + + V + + F SE E+ V E + V
Sbjct: 62 GLLERRQRVGLVFQDPDDQLFAA--DVDQDVAFGPLNLGLSEAEV---ERRVREALTAVG 116
Query: 953 LTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVR 1012
+ L LS ++KR+ IA + P ++ +DEPT+GLD ++ +R
Sbjct: 117 ASGLRERPTHC-----LSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILR 171
Query: 1013 NIVNTGRTIVCTIH 1026
+ G T+V + H
Sbjct: 172 RLRAEGMTVVISTH 185
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 83.5 bits (207), Expect = 1e-17
Identities = 61/225 (27%), Positives = 105/225 (46%), Gaps = 25/225 (11%)
Query: 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGR---KTGGIIEGDIYISGYPKRQET 899
Q L +V G + A++G SGAGK+TL+ L G +G I+ + I+ ++
Sbjct: 18 QALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELR 77
Query: 900 FARIS-GYCEQNDIHSPGLTVLESLLF------SAW---LRLPSEIELETQRAFVEEVME 949
R G Q P L+VLE++L S W L S+ + +A + +E
Sbjct: 78 KLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSK--EDKAQAL--DALE 133
Query: 950 LVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMR 1009
V + + LS Q++R+ IA LV P I+ DEP + LD +A VM
Sbjct: 134 RVGILDKAYQRAS-----TLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMD 188
Query: 1010 TVRNI-VNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGP 1053
+++I G T++ +HQ +D+ + + + + + G +++ GP
Sbjct: 189 ILKDINQEDGITVIVNLHQ--VDLAKKYADRIIGLKAGRIVFDGP 231
|
Length = 258 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 82.8 bits (205), Expect = 2e-17
Identities = 62/237 (26%), Positives = 113/237 (47%), Gaps = 16/237 (6%)
Query: 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYP-KRQE 898
++Q + +V+ G +T L+G +GAGKTTL+ ++A G + I G R
Sbjct: 13 SKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLI--PDSGKVTIDGVDTVRDP 70
Query: 899 TFAR--ISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSL 956
+F R I + +++ LT E+L + A L S E++ A + E+ + ++L
Sbjct: 71 SFVRRKIGVLFGERGLYAR-LTARENLKYFARLNGLSRKEIK---ARIAELSKRLQLLEY 126
Query: 957 SGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVN 1016
+G ST ++++ IA LV +PSI+ +DEPTSGLD R ++ + N
Sbjct: 127 LDRRVG-----EFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKN 181
Query: 1017 TGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGSKSCELIKYFEVESFMFK 1073
GR ++ + H ++ D ++ + + GE++ G + + + E F F
Sbjct: 182 EGRAVIFSSHIMQ-EVEALCDRVIVLHK-GEVVLEGSIEALDARTVLRNLEEIFAFA 236
|
Length = 245 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 81.8 bits (203), Expect = 2e-17
Identities = 55/187 (29%), Positives = 82/187 (43%), Gaps = 18/187 (9%)
Query: 844 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGYPKRQETFA 901
L ++ G L G +G+GKTTL+ ++AG G I+ D P E
Sbjct: 17 LFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEACH 76
Query: 902 RISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALI 961
+ +N + P LTV E+L F W L + + +E V L L
Sbjct: 77 YLG---HRNAMK-PALTVAENLEF--WAAF-----LGGEELDIAAALEAVGL----APLA 121
Query: 962 GLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTI 1021
LP LS Q++R+ +A LV+N I +DEPT+ LDA A A+ +R + G +
Sbjct: 122 HLPF-GYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIV 180
Query: 1022 VCTIHQP 1028
+ H P
Sbjct: 181 IAATHIP 187
|
Length = 207 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 82.6 bits (205), Expect = 2e-17
Identities = 58/196 (29%), Positives = 89/196 (45%), Gaps = 33/196 (16%)
Query: 847 NVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGG-IIEGDIYISGYPKRQ------ 897
+V+ RPG + L+G +GAGKTTL +++ G + + G +I I+G P +
Sbjct: 22 DVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGI 81
Query: 898 -ETFARISGYCEQNDIHSPGLTVLESLL--------FSAWLRLPSEIELETQ-RAFVEEV 947
TF Q PGLTVLE++ S L P + E + R E+
Sbjct: 82 ARTF--------QITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERAREL 133
Query: 948 MELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIV 1007
+E V L L+ G LS Q++RL IA L P ++ +DEP +GL+ +
Sbjct: 134 LEFVGLGELADRPAG-----NLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEEL 188
Query: 1008 MRTVRNI-VNTGRTIV 1022
+R + G TI+
Sbjct: 189 AELIRELRDRGGVTIL 204
|
Length = 250 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 85.8 bits (213), Expect = 4e-17
Identities = 54/202 (26%), Positives = 90/202 (44%), Gaps = 24/202 (11%)
Query: 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG---RKTGGIIEGDIYISGYPK 895
R L V+ PG ALVG SGAGK+TL+++L G G I + ++
Sbjct: 332 PGRRPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADAD- 390
Query: 896 RQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTS 955
+++ + Q+ G T+ E++ + + A + E +E L
Sbjct: 391 -ADSWRDQIAWVPQHPFLFAG-TIAENIRLA---------RPDASDAEIREALERAGLDE 439
Query: 956 LSGAL-------IGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVM 1008
AL IG G GLS Q +RL +A + + ++ +DEPT+ LDA A V+
Sbjct: 440 FVAALPQGLDTPIG-EGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEAEVL 498
Query: 1009 RTVRNIVNTGRTIVCTIHQPSI 1030
+R + GRT++ H+ ++
Sbjct: 499 EALRALAQ-GRTVLLVTHRLAL 519
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 80.7 bits (200), Expect = 7e-17
Identities = 55/210 (26%), Positives = 97/210 (46%), Gaps = 24/210 (11%)
Query: 845 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARIS 904
L ++ + +PG A+VG +GAGKTTL+++L +G I I G R + +
Sbjct: 19 LKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYD--PQKGQILIDGIDIRDISRKSL- 75
Query: 905 GYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLP 964
++ I G+ + ++ LFS + I L A EEV+E + ++ LP
Sbjct: 76 ----RSMI---GVVLQDTFLFSGTIM--ENIRLGRPNATDEEVIEAAKEAGAHDFIMKLP 126
Query: 965 ---------GINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIV 1015
LS +R+ L IA ++ +P I+ +DE TS +D ++ + ++
Sbjct: 127 NGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLM 186
Query: 1016 NTGRTIVCTIHQPSIDIFESFDELLFMKRG 1045
GRT + H+ S I + D++L + G
Sbjct: 187 K-GRTSIIIAHRLST-IKNA-DKILVLDDG 213
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 79.5 bits (197), Expect = 1e-16
Identities = 61/255 (23%), Positives = 102/255 (40%), Gaps = 55/255 (21%)
Query: 142 RGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHG 201
+ +DDLS + + LLG +GKTT L L G SG NG+
Sbjct: 9 TYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGE---LRPTSGTAYINGYS 65
Query: 202 FKE--FVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIK 259
+ ++ Y Q D E+TVRE L F + +G+
Sbjct: 66 IRTDRKAARQSLGYCPQFDALFDELTVREHLRFYARLKGL-------------------- 105
Query: 260 PDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGE 319
P ++ VE ++++LGL A+ +SGG K++L+
Sbjct: 106 PKSEIK--------------EEVELLLRVLGLTDKANKRART-----LSGGMKRKLSLAI 146
Query: 320 LLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVI----SLLQPAPEAYELF 375
L+G VL +DE ++GLD ++ I + + G ++I S+ EA L
Sbjct: 147 ALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK---GRSIILTTHSMD----EAEALC 199
Query: 376 DDVILLSEGQIVYQG 390
D + ++S+G++ G
Sbjct: 200 DRIAIMSDGKLRCIG 214
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 80.7 bits (200), Expect = 1e-16
Identities = 67/277 (24%), Positives = 110/277 (39%), Gaps = 60/277 (21%)
Query: 129 NMTEALLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHH 188
M + L + GNR +L+D+S + +T L+GP +GK+TLL A+ G L
Sbjct: 1 MMPMIEVENLTVSYGNR---PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPS 57
Query: 189 LQVSGKITYNGHGFKEFVPPRTSAYVSQQ---DWQVAEMTVRETLDFAGQCQGVGSKYDM 245
SG+I G ++ YV Q+ D +TV++ +
Sbjct: 58 ---SGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFP-ITVKDVV--------------- 98
Query: 246 ITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLK 305
L R K F +K V+ ++ +G++ D +G+
Sbjct: 99 --LLGRYGK-------------KGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGE---- 139
Query: 306 GISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTT---YQIIKYLKHSTRALDGTTVI 362
+SGGQK+R+ L +L +DE G+D + Y ++K L+ +G TV+
Sbjct: 140 -LSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQ-----EGKTVL 193
Query: 363 SL---LQPAPEAYELFDDVILLSEGQIVYQGPRVSVL 396
+ L FD VI L ++ GP VL
Sbjct: 194 MVTHDLGLVM---AYFDRVICL-NRHLIASGPPEEVL 226
|
Length = 254 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 81.4 bits (201), Expect = 1e-16
Identities = 58/177 (32%), Positives = 91/177 (51%), Gaps = 14/177 (7%)
Query: 853 RPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYP-KRQETFARIS-GYCEQN 910
+ G L+G +GAGKTT + +L G G I + G P + AR G Q
Sbjct: 31 QRGECFGLLGPNGAGKTTTLRMLLGLTHPD--AGSISLCGEPVPSRARHARQRVGVVPQF 88
Query: 911 DIHSPGLTVLESLL-FSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGL 969
D P TV E+LL F + L + RA V ++E +L + + A +G L
Sbjct: 89 DNLDPDFTVRENLLVFGRYFGLSAA----AARALVPPLLEFAKLENKADAKVG-----EL 139
Query: 970 STEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIH 1026
S ++RLT+A LV +P ++ +DEPT+GLD +A ++ +R+++ G+TI+ T H
Sbjct: 140 SGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTH 196
|
Length = 306 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 77.7 bits (192), Expect = 3e-16
Identities = 37/100 (37%), Positives = 55/100 (55%), Gaps = 6/100 (6%)
Query: 143 GNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGR--LGHHLQVSGKITYNGH 200
K +L+++SG ++P LT L+G +GKTTLL LAGR G ++G+I NG
Sbjct: 15 VKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGV---ITGEILINGR 71
Query: 201 GFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVG 240
+ R++ YV QQD +TVRE L F+ +G+
Sbjct: 72 PLDKNF-QRSTGYVEQQDVHSPNLTVREALRFSALLRGLS 110
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 78.0 bits (193), Expect = 3e-16
Identities = 49/182 (26%), Positives = 83/182 (45%), Gaps = 27/182 (14%)
Query: 853 RPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGYPKRQETFARISGYCEQN 910
+ G + +G +GAGKTT M ++ G + G I Y K E RI
Sbjct: 24 KKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEIT--FDGKSYQKNIEALRRIGAL---- 77
Query: 911 DIHSPG----LTVLESLLFSA-WLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPG 965
I +PG LT E+L A L + + ++EV+++V L + +
Sbjct: 78 -IEAPGFYPNLTARENLRLLARLLGIRKKR--------IDEVLDVVGLKDSAKKKVK--- 125
Query: 966 INGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTI 1025
G S ++RL IA+ L+ NP ++ +DEPT+GLD + + ++ + G T++ +
Sbjct: 126 --GFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISS 183
Query: 1026 HQ 1027
H
Sbjct: 184 HL 185
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 80.9 bits (200), Expect = 4e-16
Identities = 63/213 (29%), Positives = 101/213 (47%), Gaps = 18/213 (8%)
Query: 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYP----K 895
L +++ + G L AL+G SGAGK+TL+ ++AG +T G I ++G
Sbjct: 13 GAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPD--AGRIRLNGRVLFDVS 70
Query: 896 RQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRL--PSEIELETQRAFVEEVMELVEL 953
R G+ Q+ P +TV +++ F +R PSE E RA VEE++ LV+L
Sbjct: 71 NLAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAE---IRARVEELLRLVQL 127
Query: 954 TSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRN 1013
L+ LS QR+R+ +A L P ++ +DEP LDA+ + R +R
Sbjct: 128 EGLADRY-----PAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRK 182
Query: 1014 IV-NTGRTIVCTIHQPSIDIFESFDELLFMKRG 1045
+ G T V H + E D ++ + +G
Sbjct: 183 LHDRLGVTTVFVTHDQE-EALELADRVVVLNQG 214
|
Length = 345 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 78.8 bits (195), Expect = 5e-16
Identities = 73/270 (27%), Positives = 113/270 (41%), Gaps = 55/270 (20%)
Query: 135 LRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGK 194
+ L G + ILDDLS I +T +LGP SGK+TLL LAG L SG+
Sbjct: 5 VENLSFGYGGK---PILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLL---KPKSGE 58
Query: 195 ITYNGH-----GFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITEL 249
+ +G KE + AYV Q +TV E +
Sbjct: 59 VLLDGKDIASLSPKELA--KKLAYVPQSPSAPFGLTVYELV------------------- 97
Query: 250 ARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISG 309
+ G P + F ++ +VE +++LGL+ AD V + +SG
Sbjct: 98 -----LLGRYP------HLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDE-----LSG 141
Query: 310 GQKKRLTTGELLVGPARVLFMDEISNGLDSST---TYQIIKYLKHSTRALDGTTVISLLQ 366
G+++R+ L +L +DE ++ LD + ++++ L G TV+ +L
Sbjct: 142 GERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREK----GLTVVMVLH 197
Query: 367 PAPEAYELFDDVILLSEGQIVYQGPRVSVL 396
A D +ILL +G+IV QG VL
Sbjct: 198 DLNLAARYADHLILLKDGKIVAQGTPEEVL 227
|
Length = 258 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 77.6 bits (192), Expect = 7e-16
Identities = 57/213 (26%), Positives = 94/213 (44%), Gaps = 30/213 (14%)
Query: 845 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARIS 904
L NV+ R G A++G G+GK+TL+ +LAG G + + G RQ A +
Sbjct: 20 LDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPT--SGSVLLDGTDIRQLDPADLR 77
Query: 905 ---GYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALI 961
GY Q + LF LR I L A E ++ EL ++ +
Sbjct: 78 RNIGYVPQ-----------DVTLFYGTLR--DNITLGAPLADDERILRAAELAGVTDFVN 124
Query: 962 GLP---------GINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVR 1012
P GLS QR+ + +A L+ +P I+ +DEPTS +D + + +R
Sbjct: 125 KHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLR 184
Query: 1013 NIVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 1045
++ +T++ H+PS+ + D ++ M G
Sbjct: 185 QLL-GDKTLIIITHRPSLL--DLVDRIIVMDSG 214
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 77.9 bits (193), Expect = 7e-16
Identities = 60/220 (27%), Positives = 96/220 (43%), Gaps = 22/220 (10%)
Query: 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGY------P 894
+L V R G + A++G SG+GK+TL+ ++ G R G ++ I G
Sbjct: 14 TVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSG----EVLIDGEDISGLSE 69
Query: 895 KRQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELT 954
R G Q+ LTV E++ F LR + + E R V E +E V L
Sbjct: 70 AELYRLRRRMGMLFQSGALFDSLTVFENVAF--PLREHTRLSEEEIREIVLEKLEAVGL- 126
Query: 955 SLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNI 1014
GA P LS +KR+ +A L +P ++ DEPT+GLD A+ ++ +R++
Sbjct: 127 --RGAEDLYPA--ELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSL 182
Query: 1015 VNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGP 1053
G T + H F D + + G+++ G
Sbjct: 183 KKELGLTSIMVTHDLD-TAFAIADRIAVLYD-GKIVAEGT 220
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 77.3 bits (191), Expect = 7e-16
Identities = 54/214 (25%), Positives = 86/214 (40%), Gaps = 36/214 (16%)
Query: 854 PGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIE--GDIYISG-----YPKRQETFARIS 904
+T + G SGAGK+TL+ +AG + GG I G + P +Q R
Sbjct: 22 NEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQ----RKI 77
Query: 905 GYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLP 964
G Q P L V E+L F + E R V+E+++L+ L L
Sbjct: 78 GLVFQQYALFPHLNVRENLAFGLKRKRNRE-----DRISVDELLDLLGLDHLLNR----- 127
Query: 965 GINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCT 1024
LS +++R+ +A L A P ++ +DEP S LD ++ ++ I
Sbjct: 128 YPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKK-------N 180
Query: 1025 IHQPSIDIFESFDEL------LFMKRGGELIYAG 1052
++ P I + E + + G L Y G
Sbjct: 181 LNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 79.0 bits (195), Expect = 9e-16
Identities = 57/178 (32%), Positives = 82/178 (46%), Gaps = 16/178 (8%)
Query: 853 RPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGYP--KRQETFARISGYCE 908
R G + +G +GAGKTT + +L R T G ++GY + R G
Sbjct: 17 REGEVFGFLGPNGAGKTTTIRMLTTLLRPTSG----TARVAGYDVVREPRKVRRSIGIVP 72
Query: 909 QNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGING 968
Q LT E+L L + E E +RA EE++EL EL + +G
Sbjct: 73 QYASVDEDLTGRENLEMMGRLYGLPKDEAE-ERA--EELLELFELGEAADRPVG-----T 124
Query: 969 LSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIH 1026
S R+RL IA L+ P ++F+DEPT+GLD R + +R + G TI+ T H
Sbjct: 125 YSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTILLTTH 182
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 75.7 bits (187), Expect = 9e-16
Identities = 53/204 (25%), Positives = 81/204 (39%), Gaps = 51/204 (25%)
Query: 844 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGYPKRQETFA 901
+L NV+ + PG A++G SG+GK+TL ++ G R T G +
Sbjct: 17 VLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRV----------------- 59
Query: 902 RISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALI 961
R+ G DI L V + + EL SG++
Sbjct: 60 RLDGA----DISQWDPNEL--------------------GDHVGYLPQDDEL--FSGSIA 93
Query: 962 GLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTI 1021
N LS QR+RL +A L NP I+ +DEP S LD + + + + G T
Sbjct: 94 E----NILSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATR 149
Query: 1022 VCTIHQPSIDIFESFDELLFMKRG 1045
+ H+P S D +L ++ G
Sbjct: 150 IVIAHRPE--TLASADRILVLEDG 171
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 77.9 bits (192), Expect = 1e-15
Identities = 62/221 (28%), Positives = 109/221 (49%), Gaps = 19/221 (8%)
Query: 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIE-GDIYISGYPKR 896
++ V PG LT L+G +G+GK+TL+ +LAG R G ++ + + G +R
Sbjct: 12 GGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRR 71
Query: 897 QETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLP--SEIELETQR--AFVEEVMELVE 952
AR EQ+ + LTV + + R+P S ++ A V+ + E
Sbjct: 72 AR--ARRVALVEQDSDTAVPLTVRDVVALG---RIPHRSLWAGDSPHDAAVVDRALARTE 126
Query: 953 LTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVR 1012
L+ L+ ++ LS +R+R+ +A L P ++ +DEPT+ LD RA + VR
Sbjct: 127 LSHLADR-----DMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVR 181
Query: 1013 NIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGP 1053
+ TG T+V +H +++ S+ + + + GG ++ AGP
Sbjct: 182 ELAATGVTVVAALH--DLNLAASYCDHVVVLDGGRVVAAGP 220
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 79.6 bits (197), Expect = 1e-15
Identities = 57/206 (27%), Positives = 97/206 (47%), Gaps = 22/206 (10%)
Query: 847 NVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIE-GDIYISGYPKRQETFARI 903
+++ + G L+G SG GKTTL+ ++AG + + G I I+ P + R
Sbjct: 23 DISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEK----RP 78
Query: 904 SGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGL 963
G Q+ P +TV E++ F L++ +++ +A VEE +ELV L +
Sbjct: 79 IGMVFQSYALFPHMTVEENVAFG--LKVRKKLKKAEIKARVEEALELVGLEGFADRKP-- 134
Query: 964 PGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNI-VNTGRTIV 1022
+ LS Q++R+ +A LV P ++ +DEP S LDA+ + + ++ + G T V
Sbjct: 135 ---HQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFV 191
Query: 1023 CTIHQPSIDIFESF---DELLFMKRG 1045
H D E+ D + M G
Sbjct: 192 YVTH----DQEEALAMSDRIAVMNDG 213
|
Length = 352 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 77.0 bits (190), Expect = 1e-15
Identities = 56/203 (27%), Positives = 98/203 (48%), Gaps = 18/203 (8%)
Query: 854 PGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGYPKRQETFA--RISGYCEQ 909
PG +T L+G +GAGKTT + +LAG G + G+ +E R G+
Sbjct: 30 PGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFAT----VDGFDVVKEPAEARRRLGFVSD 85
Query: 910 NDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGL 969
+ LT E+L + A L ++ + A +EE+ + + + L +G G
Sbjct: 86 STGLYDRLTARENLEYFAGLY---GLKGDELTARLEELADRLGMEELLDRRVG-----GF 137
Query: 970 STEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPS 1029
ST R+++ IA LV +P ++ +DEPT+GLD A + +R + G+ I+ + H
Sbjct: 138 STGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQ 197
Query: 1030 IDIFESFDELLFMKRGGELIYAG 1052
++ D ++ + R G ++Y G
Sbjct: 198 -EVERLCDRVVVLHR-GRVVYEG 218
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 79.2 bits (196), Expect = 1e-15
Identities = 56/202 (27%), Positives = 91/202 (45%), Gaps = 25/202 (12%)
Query: 852 FRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGY------PKRQETFARISG 905
G L+G SG GK+TL+ ++AG + G+I I G P+++
Sbjct: 26 IEDGEFVVLLGPSGCGKSTLLRMIAGLEE--PTSGEILIDGRDVTDLPPEKRGI-----A 78
Query: 906 YCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPG 965
QN P +TV E++ F L+L + E + V+EV +L+ L L
Sbjct: 79 MVFQNYALYPHMTVYENIAFG--LKLRGVPKAEIDKR-VKEVAKLLGLEHLLNRKP---- 131
Query: 966 INGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVN--TGRTIVC 1023
LS QR+R+ +A LV P + +DEP S LDA+ ++MR+ ++ G T +
Sbjct: 132 -LQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAK-LRVLMRSEIKKLHERLGTTTIY 189
Query: 1024 TIHQPSIDIFESFDELLFMKRG 1045
H ++ D ++ M G
Sbjct: 190 VTHDQ-VEAMTLADRIVVMNDG 210
|
Length = 338 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 76.7 bits (190), Expect = 1e-15
Identities = 63/193 (32%), Positives = 91/193 (47%), Gaps = 25/193 (12%)
Query: 853 RPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGYPKRQETFARISGYCEQN 910
G ALVG SG GK+TL+ ++AG R T G++ + G P R GY Q
Sbjct: 28 EEGEFVALVGPSGCGKSTLLRIIAGLERPT----SGEVLVDGEPVTGPGPDR--GYVFQQ 81
Query: 911 DIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLS 970
D P LTVL+++ L+ + E E EL+EL LSG P LS
Sbjct: 82 DALLPWLTVLDNVALGLELQGVPKAEAR------ERAEELLELVGLSGFENAYPH--QLS 133
Query: 971 TEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVN-TGRTIVCTIHQPS 1029
R+R+ +A L +P ++ +DEP S LDA + + +I TG+T++ H
Sbjct: 134 GGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTH--- 190
Query: 1030 IDIFESFDELLFM 1042
DI DE +F+
Sbjct: 191 -DI----DEAVFL 198
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 76.6 bits (189), Expect = 2e-15
Identities = 59/217 (27%), Positives = 102/217 (47%), Gaps = 20/217 (9%)
Query: 845 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE---TFA 901
L +V+ RPG AL+G +GAGK+TL +L EG I ++G+ R+ A
Sbjct: 17 LDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQ--EGQISVAGHDLRRAPRAALA 74
Query: 902 RISGYCEQNDIHSPGLTVLESLLFSAWLR-LPSEIELETQRAFVEEVMELVELTSLSGAL 960
R+ +Q + L+V ++L + A L L RA + E++ + L +
Sbjct: 75 RLGVVFQQPTL-DLDLSVRQNLRYHAALHGLSRA----EARARIAELLARLGLAERADDK 129
Query: 961 IGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNT-GR 1019
+ L+ R+R+ IA L+ P+++ +DEPT GLD + A + VR + G
Sbjct: 130 VR-----ELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAITAHVRALARDQGL 184
Query: 1020 TIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGS 1056
+++ H +D E+ D L+ + R G ++ G
Sbjct: 185 SVLWATHL--VDEIEADDRLVVLHR-GRVLADGAAAE 218
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 75.5 bits (186), Expect = 3e-15
Identities = 55/186 (29%), Positives = 85/186 (45%), Gaps = 19/186 (10%)
Query: 847 NVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGYPKRQET--FAR 902
V+ R G + L+G +GAGKTT + +L + T G ++G+ +E R
Sbjct: 18 GVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSG----RATVAGHDVVREPREVRR 73
Query: 903 ISGYCEQNDIHSPGLTVLESLLFSAWLR-LPSEIELETQRAFVEEVMELVELTSLSGALI 961
G Q+ LT E+L A L +P +R ++E+++ V L + L+
Sbjct: 74 RIGIVFQDLSVDDELTGWENLYIHARLYGVPGAER--RER--IDELLDFVGLLEAADRLV 129
Query: 962 GLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNT-GRT 1020
S R+RL IA LV P ++F+DEPT GLD + A V + + G T
Sbjct: 130 K-----TYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMT 184
Query: 1021 IVCTIH 1026
I+ T H
Sbjct: 185 ILLTTH 190
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 76.2 bits (188), Expect = 4e-15
Identities = 63/217 (29%), Positives = 109/217 (50%), Gaps = 26/217 (11%)
Query: 847 NVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYP----KRQETFAR 902
+V+ G +T+++G +GAGK+TL+ + R G+I I G +E +
Sbjct: 19 DVSLDIPKGGITSIIGPNGAGKSTLLS-MMSRLLK-KDSGEITIDGLELTSTPSKELAKK 76
Query: 903 ISGYCEQNDIHSPGLTVLESLLFSAWLRLP-SEIELETQ-RAFVEEVMELVELTSLSGAL 960
+S ++N I+S LTV + + F R P S+ L + R + E +E + L LS
Sbjct: 77 LSILKQENHINSR-LTVRDLVGFG---RFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRY 132
Query: 961 IGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNT-GR 1019
+ + LS QR+R IA+ L + V +DEP + LD + + +M+ +R + + G+
Sbjct: 133 L-----DELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGK 187
Query: 1020 TIVCTIHQPSIDI-FESF--DELLFMKRGGELIYAGP 1053
TIV +H DI F S D ++ +K G+++ G
Sbjct: 188 TIVVVLH----DINFASCYSDHIVALKN-GKVVKQGS 219
|
Length = 252 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 75.5 bits (186), Expect = 5e-15
Identities = 61/247 (24%), Positives = 93/247 (37%), Gaps = 42/247 (17%)
Query: 146 SKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEF 205
SK+ + D+S +T LLG +GKTTLL +A L
Sbjct: 13 SKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLL-------------------- 52
Query: 206 VPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLD 265
+P + D VR + G G Y +T AR E+L
Sbjct: 53 IPDSGKVTIDGVDTVRDPSFVRRKI---GVLFGERGLYARLT--AR----------ENLK 97
Query: 266 IFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPA 325
F + L ++ + + K L L D VG S G K+++ LV
Sbjct: 98 YFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVG-----EFSTGMKQKVAIARALVHDP 152
Query: 326 RVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQ 385
+L +DE ++GLD T + ++K +G VI E L D VI+L +G+
Sbjct: 153 SILVLDEPTSGLDIRTRRKFHDFIKQLKN--EGRAVIFSSHIMQEVEALCDRVIVLHKGE 210
Query: 386 IVYQGPR 392
+V +G
Sbjct: 211 VVLEGSI 217
|
Length = 245 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 78.6 bits (194), Expect = 6e-15
Identities = 59/201 (29%), Positives = 89/201 (44%), Gaps = 38/201 (18%)
Query: 845 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIE---GDIYISGYP---KRQE 898
L V+ PG A++G SG+GK+TL+ LAG +++ G++ + G P Q+
Sbjct: 351 LDGVSLDLPPGERVAILGPSGSGKSTLLATLAG-----LLDPLQGEVTLDGVPVSSLDQD 405
Query: 899 TFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSG 958
R C Q D H TV E+L + A EE+ +E L+
Sbjct: 406 EVRRRVSVCAQ-DAHLFDTTVRENLRLAR------------PDATDEELWAALERVGLAD 452
Query: 959 ALIGLPGINGLSTE-----------QRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIV 1007
L LP GL T +R+RL +A L+A+ I+ +DEPT LDA A +
Sbjct: 453 WLRALPD--GLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAETADEL 510
Query: 1008 MRTVRNIVNTGRTIVCTIHQP 1028
+ + +GRT+V H
Sbjct: 511 LEDLLA-ALSGRTVVLITHHL 530
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 75.0 bits (185), Expect = 7e-15
Identities = 63/267 (23%), Positives = 101/267 (37%), Gaps = 48/267 (17%)
Query: 135 LRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRL---GHHLQV 191
L R L D+S I LL+GP SGK+TLL L G L + V
Sbjct: 6 AENLSFRYPGRKA--ALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLV 63
Query: 192 SGKITYNGHGFKEFVPPRTSAYVSQQ-DWQVAEMTVRETLDFAGQCQGVGSKYDMITELA 250
G T + E + V Q D Q+ TV + + F + G+
Sbjct: 64 DGLDTSSEKSLLELR--QKVGLVFQNPDDQLFGPTVEDEVAFGLENLGL----------- 110
Query: 251 RREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGG 310
RE+I V ++++GL+ D + SGG
Sbjct: 111 PREEIEER-----------------------VAEALELVGLEELLDRPPFNL-----SGG 142
Query: 311 QKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPE 370
QK+R+ +L +L +DE + GLD ++++ LK + G T+I +
Sbjct: 143 QKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKK-LKEEGGKTIIIVTHDLEL 201
Query: 371 AYELFDDVILLSEGQIVYQGPRVSVLD 397
E D V++L +G+I+ G + +
Sbjct: 202 VLEYADRVVVLDDGKILADGDPAEIFN 228
|
Length = 235 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 74.8 bits (185), Expect = 7e-15
Identities = 44/177 (24%), Positives = 75/177 (42%), Gaps = 29/177 (16%)
Query: 853 RPGVLTALVGVSGAGKTTLMDVLAG--RKTGG--IIEGDIYISGYPKRQETFARISGYCE 908
+ G LVG SG+GK+TL + G + T G I +G + + ++ +
Sbjct: 29 KKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRRKEIQMVF 88
Query: 909 QNDIHS--PGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTS---------LS 957
Q+ + S P +T+ E + + + E ++ V ++ V L LS
Sbjct: 89 QDPMSSLNPRMTIGEQIAEPLRIHGKLSKK-EARKEAVLLLLVGVGLPEEVLNRYPHELS 147
Query: 958 GALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNI 1014
G G QR+R+ IA L NP ++ DEPTS LD A ++ ++ +
Sbjct: 148 G---------G----QRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKL 191
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 75.1 bits (185), Expect = 1e-14
Identities = 53/195 (27%), Positives = 88/195 (45%), Gaps = 21/195 (10%)
Query: 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYP---KRQET 899
+LL V+ RPG + A++G +GAGK+TL+ L+G + G++ ++G P E
Sbjct: 15 RLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPD--SGEVTLNGVPLNSWPPEE 72
Query: 900 FARISGYCEQNDIHSPGLTVLESLLFSAWLRLP--SEIELETQRAFVEEVMELVELTSLS 957
AR QN + TV E + R+P S E E + + +L+ L+
Sbjct: 73 LARHRAVLPQNSSLAFPFTVQEVVQMG---RIPHRSGREPEEDERIAAQALAATDLSGLA 129
Query: 958 GALIGLPGINGLSTEQRKRLTIAVEL------VANPSIVFMDEPTSGLDARAAAIVMRTV 1011
G LS +++R+ +A L V + +F+DEPTS LD +R
Sbjct: 130 GRDY-----RTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLA 184
Query: 1012 RNIVNTGRTIVCTIH 1026
R + G ++ +H
Sbjct: 185 RQLAREGGAVLAVLH 199
|
Length = 259 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 74.7 bits (184), Expect = 1e-14
Identities = 59/234 (25%), Positives = 104/234 (44%), Gaps = 21/234 (8%)
Query: 830 VELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIY 889
+ELK V + ++L +++ PG A+VG +GAGKTTL+ +L G GD+
Sbjct: 32 IELKNVSVRRNGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPS--SGDVT 89
Query: 890 ISGYPKRQETF-----ARISGYC--EQNDIHSPGLTVLESLL--FSAWLRLPSEIELETQ 940
+ G + RI G E ++ TV + +L F A + + E
Sbjct: 90 LLGRRFGKGETIFELRKRI-GLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAED 148
Query: 941 RAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLD 1000
A + ++EL+ L+ G LS +++R+ IA LV +P ++ +DEP GLD
Sbjct: 149 LAAAQWLLELLGAKHLADRPFG-----SLSQGEQRRVLIARALVKDPELLILDEPAQGLD 203
Query: 1001 ARAAAIVMRTVRNIVNT--GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAG 1052
A ++ + + + ++ H +I F L + + GE++ G
Sbjct: 204 LIAREQLLNRLEELAASPGAPALLFVTHHAE-EIPPCFTHRL-LLKEGEVVAQG 255
|
Length = 257 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 73.8 bits (182), Expect = 1e-14
Identities = 54/186 (29%), Positives = 84/186 (45%), Gaps = 12/186 (6%)
Query: 845 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGG-IIEGDIYISGYPKRQETFA 901
L +V+ G L G SGAGK+TL+ ++ G R T G I+ +S R+ F
Sbjct: 18 LRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFL 77
Query: 902 RIS-GYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGAL 960
R G Q+ P TV E++ P + + R V E+++L L
Sbjct: 78 RRQIGVVFQDFRLLPDRTVYENVAL------PLRVIGKPPREIRRRVSEVLDLVGLKHKA 131
Query: 961 IGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRT 1020
LP + LS +++R+ IA +V P+++ DEPT LD + +MR I G T
Sbjct: 132 RALP--SQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTT 189
Query: 1021 IVCTIH 1026
++ H
Sbjct: 190 VLMATH 195
|
Length = 223 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 73.6 bits (181), Expect = 2e-14
Identities = 57/200 (28%), Positives = 85/200 (42%), Gaps = 18/200 (9%)
Query: 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYP---- 894
E L +L V + G A+VG SG+GK+TL+ VLAG G++ + G P
Sbjct: 20 EGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPS--SGEVRLLGQPLHKL 77
Query: 895 ---KRQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELV 951
R AR G+ Q+ P LT LE++ LP E+ E+ L+
Sbjct: 78 DEDARAALRARHVGFVFQSFHLIPNLTALENVA------LPLELRGESSADSRAGAKALL 131
Query: 952 ELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTV 1011
E L L P LS +++R+ +A P ++F DEPT LD + +
Sbjct: 132 EAVGLGKRLTHYPA--QLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLL 189
Query: 1012 RNIV-NTGRTIVCTIHQPSI 1030
+ G T+V H P +
Sbjct: 190 FALNRERGTTLVLVTHDPQL 209
|
Length = 228 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 73.0 bits (180), Expect = 3e-14
Identities = 50/195 (25%), Positives = 81/195 (41%), Gaps = 21/195 (10%)
Query: 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG---RKTGGIIEGDIYISGYPKRQET 899
L +++ G +TAL+G SG GK+TL+ +L G EG++ + G
Sbjct: 14 HALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLD 73
Query: 900 FARIS-----GYCEQ--NDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVE 952
+ G Q N ++ +++ + L E +R VEE +
Sbjct: 74 VDVLELRRRVGMVFQKPNPFP---GSIYDNVAYGLRLHGIKLKEELDER--VEEALRKAA 128
Query: 953 LT-SLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTV 1011
L + L L GLS Q++RL +A L P ++ +DEPTS LD + A + +
Sbjct: 129 LWDEVKDRLHAL----GLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELI 184
Query: 1012 RNIVNTGRTIVCTIH 1026
+ TIV H
Sbjct: 185 AEL-KKEYTIVIVTH 198
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 76.5 bits (189), Expect = 3e-14
Identities = 52/182 (28%), Positives = 76/182 (41%), Gaps = 29/182 (15%)
Query: 847 NVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIE-GDIYISGYPKRQETFARI 903
+V+ R G LVG SG+GK+TL +LAG + G I + R
Sbjct: 309 DVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLRRR 368
Query: 904 SGYCEQNDIHS--PGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELT------- 954
Q+ S P +TV + L LR+ +RA V E++ELV L
Sbjct: 369 IQMVFQDPYSSLNPRMTVGDILAEP--LRIHGGGSGAERRARVAELLELVGLPPEFLDRY 426
Query: 955 --SLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVR 1012
LSG QR+R+ IA L P ++ +DEP S LD A V+ ++
Sbjct: 427 PHELSGG-------------QRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLK 473
Query: 1013 NI 1014
++
Sbjct: 474 DL 475
|
Length = 539 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 72.2 bits (178), Expect = 4e-14
Identities = 68/247 (27%), Positives = 102/247 (41%), Gaps = 52/247 (21%)
Query: 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQV--SGKITYNGHGFKEFV 206
LDDLS + P LLGP GKTTLL +AG L+ SG+I +G V
Sbjct: 14 RALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAG-----LERPDSGEILIDGRDVTG-V 67
Query: 207 PP--RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDL 264
PP R V Q +TV E + F + +GV E+ R
Sbjct: 68 PPERRNIGMVFQDYALFPHLTVAENIAFGLKLRGVPKA-----EIRAR------------ 110
Query: 265 DIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGP 324
V +++++GL+ + +SGGQ++R+ L
Sbjct: 111 -----------------VRELLELVGLEGLLNRYPH-----ELSGGQQQRVALARALARE 148
Query: 325 ARVLFMDE-ISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSE 383
+L +DE +S LD+ ++ + LK R L G T I + EA L D + +++E
Sbjct: 149 PSLLLLDEPLSA-LDAKLREELREELKELQREL-GITTIYVTHDQEEALALADRIAVMNE 206
Query: 384 GQIVYQG 390
G+IV G
Sbjct: 207 GRIVQVG 213
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 73.0 bits (180), Expect = 4e-14
Identities = 60/235 (25%), Positives = 96/235 (40%), Gaps = 33/235 (14%)
Query: 853 RPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGYPKRQETFARISGYCEQN 910
G A++G SG GK+TL+ ++AG + T G + D P GY Q
Sbjct: 27 EKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPD------IGYVFQE 80
Query: 911 DIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLS 970
D P LTVL+++ LR S+ E E EL+EL L+G P LS
Sbjct: 81 DALLPWLTVLDNVALGLELRGKSKAEAR------ERAKELLELVGLAGFEDKYPH--QLS 132
Query: 971 TEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIV-NTGRTIVCTIHQPS 1029
R+R+ IA L P ++ +DEP LDA + + + T +T++ H
Sbjct: 133 GGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTH--- 189
Query: 1030 IDIFESFDELLFMKRGGELIYAGPLGSKSCELIKYFEVESFMFKSPRIFYCQILF 1084
DE +++ + + L ++ + + E++ PRI
Sbjct: 190 -----DVDEAVYL---ADRVVV--LSNRPGRIGEELEID---LPRPRIRGDPEFL 231
|
Length = 248 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 75.5 bits (186), Expect = 7e-14
Identities = 60/219 (27%), Positives = 98/219 (44%), Gaps = 30/219 (13%)
Query: 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE 898
+ +L +++ + PG A+VG SG+GK+TL+ +L G+I I G R
Sbjct: 339 PGKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYD--PTSGEILIDGIDIRDI 396
Query: 899 TFA---RISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTS 955
+ + G Q + LLFS +R I L A EE+ E ++L +
Sbjct: 397 SLDSLRKRIGIVSQ-----------DPLLFSGTIR--ENIALGRPDATDEEIEEALKLAN 443
Query: 956 LSGALIGLPGI---------NGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAI 1006
+ LP LS QR+RL IA L+ NP I+ +DE TS LD A+
Sbjct: 444 AHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEAL 503
Query: 1007 VMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 1045
+ ++ ++ GRT + H+ S ++ D ++ + G
Sbjct: 504 IQDALKKLLK-GRTTLIIAHRLS--TIKNADRIIVLDNG 539
|
Length = 567 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 70.8 bits (174), Expect = 1e-13
Identities = 51/189 (26%), Positives = 82/189 (43%), Gaps = 19/189 (10%)
Query: 844 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGYPKRQ--ET 899
L +++ G + G +GAGKTTL+ +LAG R G++Y G P + E+
Sbjct: 17 LFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPD----AGEVYWQGEPIQNVRES 72
Query: 900 FARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGA 959
+ + Y LT LE+L F W R T + E + V L L
Sbjct: 73 YHQALLYLGHQPGIKTELTALENLHF--WQRFHGSGNAAT----IWEALAQVGLAGL--- 123
Query: 960 LIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGR 1019
LP + LS Q++R+ +A ++ + +DEP + LD A++ + G
Sbjct: 124 -EDLP-VGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQGG 181
Query: 1020 TIVCTIHQP 1028
++ T HQP
Sbjct: 182 IVLLTTHQP 190
|
Length = 209 |
| >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 72.0 bits (176), Expect = 1e-13
Identities = 67/215 (31%), Positives = 100/215 (46%), Gaps = 26/215 (12%)
Query: 855 GVLTALVGVSGAGKTTLMDVLAGRKTG-GIIEGDIYISGYP-KRQETFAR-------ISG 905
G + AL+G SG+GK+TL+ L+G TG I + G +R+ AR +G
Sbjct: 30 GEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKSRANTG 89
Query: 906 YCEQNDIHSPGLTVLESLLFSAWLRLPSE-------IELETQRAFVEEVMELVELTSLSG 958
Y Q L+VLE++L A P + QRA L LT +
Sbjct: 90 YIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRA-------LQALTRVGM 142
Query: 959 ALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNI-VNT 1017
++ LS Q++R+ IA L+ ++ DEP + LD +A IVM T+R+I N
Sbjct: 143 VHFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQND 202
Query: 1018 GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAG 1052
G T+V T+HQ +D + E + R G + Y G
Sbjct: 203 GITVVVTLHQ--VDYALRYCERIVALRQGHVFYDG 235
|
Length = 262 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 70.8 bits (174), Expect = 2e-13
Identities = 63/223 (28%), Positives = 101/223 (45%), Gaps = 26/223 (11%)
Query: 834 QEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGY 893
QEG L+ ++L V+ + G + A+VG SG+GK+TL+ +L G G++ +G
Sbjct: 12 QEGKLD--TRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNP--TSGEVLFNGQ 67
Query: 894 PKRQETFARIS-------GYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEE 946
+ + + G+ Q P T LE++ + S E + +RA
Sbjct: 68 SLSKLSSNERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAK-ERA---- 122
Query: 947 VMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAI 1006
E++E L + P LS +R+R+ IA LV PS+V DEPT LD A I
Sbjct: 123 -YEMLEKVGLEHRINHRPS--ELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKI 179
Query: 1007 V---MRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGG 1046
+ M + +NT +V H ++ + D +L MK G
Sbjct: 180 IFDLMLELNRELNTSFLVV--THDL--ELAKKLDRVLEMKDGQ 218
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 75.0 bits (184), Expect = 2e-13
Identities = 59/181 (32%), Positives = 90/181 (49%), Gaps = 22/181 (12%)
Query: 853 RPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARIS------GY 906
RPG L+GV+GAGKTT +L G T + GD ++G + IS GY
Sbjct: 1963 RPGECFGLLGVNGAGKTTTFKMLTGDTT--VTSGDATVAG----KSILTNISDVHQNMGY 2016
Query: 907 CEQNDIHSPGLTVLESLLFSAWLR-LPSEIELETQRAFVEEVMELVELTSLSGALIGLPG 965
C Q D LT E L A LR +P+E E ++ + L L+ + L G
Sbjct: 2017 CPQFDAIDDLLTGREHLYLYARLRGVPAE---EIEKVANWSIQSL-GLSLYADRLAGT-- 2070
Query: 966 INGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTI 1025
S +++L+ A+ L+ P +V +DEPT+G+D +A ++ T+ +I+ GR +V T
Sbjct: 2071 ---YSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTS 2127
Query: 1026 H 1026
H
Sbjct: 2128 H 2128
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 73.7 bits (182), Expect = 2e-13
Identities = 54/214 (25%), Positives = 91/214 (42%), Gaps = 29/214 (13%)
Query: 845 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGYPKRQETFAR 902
L V+ RPG + AL+G +GAGK+TLM +L+G G+I I G P
Sbjct: 24 LDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPD----SGEILIDGKP------VA 73
Query: 903 ISGYCEQND-----IH-----SPGLTVLESLLFSAWLRLPS-EIELETQRAFVEEVMELV 951
S + +H P L+V E++ I+ + R E++ +
Sbjct: 74 FSSPRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARL 133
Query: 952 ELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTV 1011
L L+G LS QR+ + IA L + ++ +DEPT+ L + + +
Sbjct: 134 GLDIDPDTLVG-----DLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLI 188
Query: 1012 RNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 1045
R + G I+ H+ ++FE D + ++ G
Sbjct: 189 RRLKAQGVAIIYISHRLD-EVFEIADRITVLRDG 221
|
Length = 500 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 69.7 bits (171), Expect = 2e-13
Identities = 45/191 (23%), Positives = 79/191 (41%), Gaps = 16/191 (8%)
Query: 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGYPKRQ 897
L ++ G + G +G GKTTL+ +LAG R G + + + +++
Sbjct: 11 GERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNG--TALAEQR 68
Query: 898 ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLS 957
+ R Y P L+ LE+L F W + + +E+ + V LT
Sbjct: 69 DEPHRNILYLGHLPGLKPELSALENLHF--WAAI-----HGGAQRTIEDALAAVGLTGFE 121
Query: 958 GALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNT 1017
LS Q++RL +A ++ + +DEPT+ LD A++ +R +
Sbjct: 122 DLPA-----AQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLAR 176
Query: 1018 GRTIVCTIHQP 1028
G ++ T HQ
Sbjct: 177 GGIVLLTTHQD 187
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 69.6 bits (171), Expect = 3e-13
Identities = 58/215 (26%), Positives = 103/215 (47%), Gaps = 24/215 (11%)
Query: 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYI-----SGYPK 895
R Q+L ++ PG + L G SG+GKTTL+ ++ G ++ + EG + + G +
Sbjct: 17 RKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRS--VQEGSLKVLGQELYGASE 74
Query: 896 RQETFARIS-GYCEQ--NDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVE 952
++ R + GY Q N + LT +++ + L L + + R ++E V
Sbjct: 75 KELVQLRRNIGYIFQAHNLLGF--LTARQNVQMA--LELQPNLSYQEARERARAMLEAVG 130
Query: 953 LTSLSGALIG-LPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTV 1011
L G + P + LS Q++R+ IA LV P +V DEPT+ LD+++ V+ +
Sbjct: 131 L----GDHLDYYP--HNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELM 184
Query: 1012 RNIV-NTGRTIVCTIHQPSIDIFESFDELLFMKRG 1045
+ + G TI+ H I + D ++ M+ G
Sbjct: 185 QKLAREQGCTILIVTHDNR--ILDVADRIVHMEDG 217
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 71.8 bits (176), Expect = 4e-13
Identities = 54/177 (30%), Positives = 89/177 (50%), Gaps = 16/177 (9%)
Query: 854 PGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYP-KRQETFARIS-GYCEQND 911
G L+G +GAGK+T+ ++ G + G I + G P + AR G Q D
Sbjct: 66 SGECFGLLGPNGAGKSTIARMILGMTSPD--AGKITVLGVPVPARARLARARIGVVPQFD 123
Query: 912 IHSPGLTVLESLL-FSAWLRLPS-EIELETQRAFVEEVMELVELTSLSGALIGLPGINGL 969
TV E+LL F + + + EIE A + ++E L S + A + L
Sbjct: 124 NLDLEFTVRENLLVFGRYFGMSTREIE-----AVIPSLLEFARLESKADARVSD-----L 173
Query: 970 STEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIH 1026
S ++RLT+A L+ +P ++ +DEPT+GLD A ++ +R+++ G+TI+ T H
Sbjct: 174 SGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTH 230
|
Length = 340 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 69.4 bits (171), Expect = 4e-13
Identities = 53/177 (29%), Positives = 83/177 (46%), Gaps = 21/177 (11%)
Query: 853 RPGVLTALVGVSGAGKTTLMDVLAG---RKTGGIIEGDIYISGYPKRQETFARIS---GY 906
G + AL+G +GAGKTTL+ + G ++G I I+G P R GY
Sbjct: 24 PEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLP----PHERARAGIGY 79
Query: 907 CEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELV-ELTSLSGALIGLPG 965
+ P LTV E+LL A+ R ++ +A +E V EL L L G
Sbjct: 80 VPEGRRIFPELTVEENLLLGAYARRRAKR-----KARLERVYELFPRLKERRKQLAGT-- 132
Query: 966 INGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIV 1022
LS +++ L IA L++ P ++ +DEP+ GL + + +R + + G TI+
Sbjct: 133 ---LSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTIL 186
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 69.7 bits (171), Expect = 5e-13
Identities = 58/210 (27%), Positives = 97/210 (46%), Gaps = 13/210 (6%)
Query: 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRK---TGGIIEGDIYISGYPKR 896
L +V+ G L AL+G SG+GKTTL+ ++AG + +G I+ G + P +
Sbjct: 13 GDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQ 72
Query: 897 QETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSL 956
+ R G+ Q+ +TV +++ F LR+ E + +V EL++L L
Sbjct: 73 E----RNVGFVFQHYALFRHMTVFDNVAFG--LRVKPRSERPPEAEIRAKVHELLKLVQL 126
Query: 957 SGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVN 1016
P LS QR+R+ +A L P ++ +DEP LDA+ + R +R + +
Sbjct: 127 DWLADRYP--AQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHD 184
Query: 1017 -TGRTIVCTIHQPSIDIFESFDELLFMKRG 1045
T V H + E D ++ M +G
Sbjct: 185 ELHVTTVFVTHDQE-EALEVADRVVVMNKG 213
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 70.2 bits (172), Expect = 5e-13
Identities = 65/221 (29%), Positives = 98/221 (44%), Gaps = 36/221 (16%)
Query: 847 NVTGAFRPGVLTALVGVSGAGKTTLMDVLAGR--KTGGIIE--------GDIYISGYPKR 896
+V+ PG + +VG SG+GKTTL+ ++GR G + D+Y +R
Sbjct: 24 DVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAER 83
Query: 897 QETFARISGYCEQNDIH------SPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMEL 950
+ G+ QN S G + E L+ + R I RA ++ +E
Sbjct: 84 RRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLM-AIGARHYGNI-----RAEAQDWLEE 137
Query: 951 VELTSLSGALIGLPGINGL----STEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAI 1006
VE I L I+ L S ++RL IA LV P +VFMDEPT GLD A
Sbjct: 138 VE--------IDLDRIDDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQAR 189
Query: 1007 VMRTVRNIV-NTGRTIVCTIHQPSIDIFESFDELLFMKRGG 1046
++ +R +V G +V H ++ + D L+ MK+G
Sbjct: 190 LLDLLRGLVRELGLAVVIVTHDLAVARLLA-DRLMVMKQGQ 229
|
Length = 258 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 69.4 bits (170), Expect = 5e-13
Identities = 58/206 (28%), Positives = 91/206 (44%), Gaps = 36/206 (17%)
Query: 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYP---KR 896
D +L N++ +PG + +VG SG+GK+TL ++ G + + G+
Sbjct: 13 DGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPE--NGRVLVDGHDLALAD 70
Query: 897 QETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSL 956
R G Q E++LF+ +R I L +E V +E L
Sbjct: 71 PAWLRRQVGVVLQ-----------ENVLFNRSIR--DNIALADPGMSMERV---IEAAKL 114
Query: 957 SGA-------------LIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARA 1003
+GA ++G G GLS QR+R+ IA L+ NP I+ DE TS LD +
Sbjct: 115 AGAHDFISELPEGYDTIVGEQGA-GLSGGQRQRIAIARALIHNPRILIFDEATSALDYES 173
Query: 1004 AAIVMRTVRNIVNTGRTIVCTIHQPS 1029
+MR + +I GRT++ H+ S
Sbjct: 174 EHAIMRNMHDIC-AGRTVIIIAHRLS 198
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 69.0 bits (169), Expect = 6e-13
Identities = 53/175 (30%), Positives = 79/175 (45%), Gaps = 17/175 (9%)
Query: 833 KQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISG 892
K G E L +L V + G AL+G SG+GK+TL+ +LAG G G++ + G
Sbjct: 14 KSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGS--SGEVSLVG 71
Query: 893 YP-------KRQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVE 945
P R + A+ G+ Q+ + P L LE++ A LR S +
Sbjct: 72 QPLHQMDEEARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAK--- 128
Query: 946 EVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLD 1000
L+E L L LP LS +++R+ +A P ++F DEPT LD
Sbjct: 129 ---ALLEQLGLGKRLDHLPA--QLSGGEQQRVALARAFNGRPDVLFADEPTGNLD 178
|
Length = 228 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 69.0 bits (170), Expect = 7e-13
Identities = 60/250 (24%), Positives = 96/250 (38%), Gaps = 49/250 (19%)
Query: 147 KLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV 206
K+ L +S + + LLG +GKTTLL + G + SG+I ++G +
Sbjct: 15 KIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPR---SGRIIFDGEDITG-L 70
Query: 207 PP--RTS---AYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPD 261
PP R AYV + +TV E L R ++ +
Sbjct: 71 PPHERARLGIAYVPEGRRIFPRLTVEENLLLGA-------------YARRDKEAQERDLE 117
Query: 262 EDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELL 321
E ++F + Q+ A TL SGG+++ L L
Sbjct: 118 EVYELFPRLKERRNQR-----------------AGTL---------SGGEQQMLAIARAL 151
Query: 322 VGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILL 381
+ ++L +DE S GL +I + +K R G T++ + Q A A E+ D +L
Sbjct: 152 MSRPKLLLLDEPSEGLAPKIVEEIFEAIKE-LRKEGGMTILLVEQNARFALEIADRGYVL 210
Query: 382 SEGQIVYQGP 391
G+IV G
Sbjct: 211 ENGRIVLSGT 220
|
Length = 237 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 70.5 bits (173), Expect = 9e-13
Identities = 67/273 (24%), Positives = 106/273 (38%), Gaps = 53/273 (19%)
Query: 151 LDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFK--EFVPP 208
LDD+S I+ L LLGP +GK+TLL +AG +G+I NG +
Sbjct: 18 LDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLET---PDAGRIRLNGRVLFDVSNLAV 74
Query: 209 RTSA--YVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDI 266
R +V Q MTV + + F + + + +E R ++ +
Sbjct: 75 RDRKVGFVFQHYALFPHMTVADNIAFGLKVRK-----ERPSEAEIRARVEEL-------- 121
Query: 267 FMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPAR 326
L + D +SGGQ++R+ L +
Sbjct: 122 ------------------------LRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPK 157
Query: 327 VLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQI 386
VL +DE LD+ ++ ++L+ G T + + EA EL D V++L++G+I
Sbjct: 158 VLLLDEPFGALDAKVRKELRRWLR-KLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRI 216
Query: 387 VYQGPRVSVLDFFASMGFSCPKRKNVADFLQEV 419
GP V D P + VA FL EV
Sbjct: 217 EQVGPPDEVYDH--------PASRFVARFLGEV 241
|
Length = 345 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 69.4 bits (170), Expect = 9e-13
Identities = 68/221 (30%), Positives = 103/221 (46%), Gaps = 26/221 (11%)
Query: 844 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETF 900
LL ++ F G +T L+G +G+GK+TL+ +L GR EG+I + P + F
Sbjct: 26 LLHPLSLTFPAGKVTGLIGHNGSGKSTLLKML-GRHQPPS-EGEILLDAQPLESWSSKAF 83
Query: 901 ARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIEL----ETQRAFVEEVMELVELTSL 956
AR Y Q + G+TV E A R P L R VEE + LV L L
Sbjct: 84 ARKVAYLPQQLPAAEGMTVRE---LVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPL 140
Query: 957 SGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLD----ARAAAIVMRTVR 1012
+ L+ + LS +R+R IA+ + + + +DEPTS LD A+V R +
Sbjct: 141 AHRLV-----DSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQ 195
Query: 1013 NIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGP 1053
G T++ +H I++ + + L RGGE+I G
Sbjct: 196 ---ERGLTVIAVLH--DINMAARYCDYLVALRGGEMIAQGT 231
|
Length = 265 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 71.9 bits (177), Expect = 1e-12
Identities = 69/279 (24%), Positives = 107/279 (38%), Gaps = 49/279 (17%)
Query: 116 GSRALPTIPNFIFNMTEALLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKT 175
G + L +P + + G +L+DLS I P ++G SGK+
Sbjct: 458 GDKTLIHLPKLQGEIE---FENVSFRYGPDDPP-VLEDLSLEIPPGEKVAIVGRSGSGKS 513
Query: 176 TLLLALAGRLGHHLQVSGKITYNGHGFKEFVPP---RTSAYVSQQDWQVAEMTVRETLDF 232
TLL L G G+I +G + R YV Q + ++RE +
Sbjct: 514 TLLKLLLGLYKP---QQGRILLDGVDLNDIDLASLRRQVGYVLQDP-FLFSGSIRENIAL 569
Query: 233 AGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLD 292
+ + I E A ++AG E I L
Sbjct: 570 GNP----EATDEEIIEAA---QLAGA--HEF------------------------IENLP 596
Query: 293 TCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHS 352
DT VG E +SGGQ++RL L+ ++L +DE ++ LD T I++ L
Sbjct: 597 MGYDTPVG-EGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLL-- 653
Query: 353 TRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQGP 391
+ L G TVI ++ D +I+L +G+IV QG
Sbjct: 654 -QILQGRTVI-IIAHRLSTIRSADRIIVLDQGKIVEQGS 690
|
Length = 709 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 68.0 bits (167), Expect = 1e-12
Identities = 46/198 (23%), Positives = 88/198 (44%), Gaps = 25/198 (12%)
Query: 855 GVLTALVGVSGAGKTTLMDVLAG--RKTGG--IIEGDIYISGYPKRQETFARIS-GYCEQ 909
G + A++G SG+GK+TL++++ + G + G K+ F R GY Q
Sbjct: 24 GKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGQETPPLNSKKASKFRREKLGYLFQ 83
Query: 910 NDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPG---- 965
N TV E+L ++ L+ ++ +E E + +GL
Sbjct: 84 NFALIENETVEENL----------DLGLKYKKLSKKEKREKKKEALEK---VGLNLKLKQ 130
Query: 966 -INGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCT 1024
I LS +++R+ +A ++ P ++ DEPT LD + V+ + + + G+TI+
Sbjct: 131 KIYELSGGEQQRVALARAILKPPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIV 190
Query: 1025 IHQPSIDIFESFDELLFM 1042
H P + + D ++ +
Sbjct: 191 THDPE--VAKQADRVIEL 206
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 68.7 bits (168), Expect = 1e-12
Identities = 52/163 (31%), Positives = 83/163 (50%), Gaps = 11/163 (6%)
Query: 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETF 900
Q L +V G L AL+G SG+GK+TL+ ++AG + G I ++G +
Sbjct: 12 SFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPD--SGRIRLNGQDATRVHA 69
Query: 901 A-RISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGA 959
R G+ Q+ LTV +++ F +R + ++ +A VEE++ELV+L L
Sbjct: 70 RDRKIGFVFQHYALFKHLTVRDNIAFGLEIRKHPKAKI---KARVEELLELVQLEGLGDR 126
Query: 960 LIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDAR 1002
P N LS QR+R+ +A L P ++ +DEP LDA+
Sbjct: 127 Y---P--NQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAK 164
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 66.5 bits (163), Expect = 2e-12
Identities = 35/89 (39%), Positives = 54/89 (60%), Gaps = 4/89 (4%)
Query: 304 LKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVI- 362
L+G+S Q+KRLT G L +LF+DE ++GLDS Y I+++LK A G ++
Sbjct: 106 LRGLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKL--ADSGQAILC 163
Query: 363 SLLQPAPEAYELFDDVILLSE-GQIVYQG 390
++ QP+ +E FD ++LL G+ VY G
Sbjct: 164 TIHQPSASIFEKFDRLLLLKRGGKTVYFG 192
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 67.4 bits (165), Expect = 2e-12
Identities = 69/242 (28%), Positives = 96/242 (39%), Gaps = 45/242 (18%)
Query: 151 LDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGF-KEFVPPR 209
+ +S +R + LLGP +GKTT + L L SG+ T GH +E R
Sbjct: 16 VRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLK---PTSGRATVAGHDVVREPREVR 72
Query: 210 TS-AYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFM 268
V Q E+T E L + GV RRE+I DE LD
Sbjct: 73 RRIGIVFQDLSVDDELTGWENLYIHARLYGVPGA-------ERRERI-----DELLDFV- 119
Query: 269 KSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVL 328
GL AD LV K SGG ++RL LV VL
Sbjct: 120 ---------------------GLLEAADRLV-----KTYSGGMRRRLEIARSLVHRPEVL 153
Query: 329 FMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVY 388
F+DE + GLD T + +Y++ G T++ EA +L D V ++ G+I+
Sbjct: 154 FLDEPTIGLDPQTRAHVWEYIEKLKEE-FGMTILLTTHYMEEAEQLCDRVAIIDHGRIIA 212
Query: 389 QG 390
+G
Sbjct: 213 EG 214
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 69.2 bits (169), Expect = 2e-12
Identities = 53/170 (31%), Positives = 90/170 (52%), Gaps = 14/170 (8%)
Query: 860 LVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPK-RQETFARIS-GYCEQNDIHSPGL 917
L+G +GAGK+T+ +L G + G I + G P + AR++ G Q D P
Sbjct: 35 LLGPNGAGKSTIARMLLGMISPD--RGKITVLGEPVPSRARLARVAIGVVPQFDNLDPEF 92
Query: 918 TVLESLL-FSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKR 976
TV E+LL F + + + E+E + ++E L S + + L LS ++R
Sbjct: 93 TVRENLLVFGRYFGMSTR-EIEA---VIPSLLEFARLESKADVRVAL-----LSGGMKRR 143
Query: 977 LTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIH 1026
LT+A L+ +P ++ +DEPT+GLD A ++ +R+++ G+TI+ T H
Sbjct: 144 LTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTH 193
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 67.7 bits (166), Expect = 2e-12
Identities = 50/204 (24%), Positives = 98/204 (48%), Gaps = 24/204 (11%)
Query: 853 RPGVLTALVGVSGAGKTTLMDVLAGRKTGGII---EGDIYISGYPKRQETFARISGYCEQ 909
G + L+G +GAGKTT + ++ G II G++ G P RI GY +
Sbjct: 24 EKGEIFGLLGPNGAGKTTTIRMILG-----IILPDSGEVLFDGKPLDIAARNRI-GYLPE 77
Query: 910 NDIHSPGLTVLESLLFSAWLR--LPSEIELETQRAFVEEVMELVELTSLSGALIGLPGIN 967
P + V++ L++ A L+ E R ++E +E +EL+ + +
Sbjct: 78 ERGLYPKMKVIDQLVYLAQLKGLKKEEA-----RRRIDEWLERLELSEYA-----NKRVE 127
Query: 968 GLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQ 1027
LS ++++ ++ +P ++ +DEP SGLD ++ +R + G+T++ + HQ
Sbjct: 128 ELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQ 187
Query: 1028 PSIDIFESF-DELLFMKRGGELIY 1050
+++ E D +L + +G ++Y
Sbjct: 188 --MELVEELCDRVLLLNKGRAVLY 209
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 71.5 bits (176), Expect = 2e-12
Identities = 65/212 (30%), Positives = 104/212 (49%), Gaps = 28/212 (13%)
Query: 844 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGYPKRQETFA 901
L+ N + +PG ALVG SG+GK+T+ ++AG + G +I G P+ +
Sbjct: 494 LIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSG----EILFDGIPREEIPRE 549
Query: 902 RISG---YCEQNDIHSPGLTVLESLLFSAWLR-LP-SEIELETQRAFVEEVMELVELTSL 956
++ +Q DI TV ++L + W +P +++ + A + +V +TS
Sbjct: 550 VLANSVAMVDQ-DIFLFEGTVRDNL--TLWDPTIPDADLVRACKDAAIHDV-----ITSR 601
Query: 957 SGAL---IGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRN 1013
G + G N LS QR+RL IA LV NPSI+ +DE TS LD I+ N
Sbjct: 602 PGGYDAELAEGGAN-LSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIID---DN 657
Query: 1014 IVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 1045
+ G T + H+ S I + DE++ ++RG
Sbjct: 658 LRRRGCTCIIVAHRLST-IRDC-DEIIVLERG 687
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 68.1 bits (167), Expect = 2e-12
Identities = 50/197 (25%), Positives = 89/197 (45%), Gaps = 16/197 (8%)
Query: 859 ALVGVSGAGKTTLMDVLAG---RKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSP 915
++G +G+GK+ L++ +AG +G I+ I+ P + Y QN P
Sbjct: 29 VILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDI----SYVPQNYALFP 84
Query: 916 GLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRK 975
+TV +++ + R + E+E +V+E+ E+ + L P LS +++
Sbjct: 85 HMTVYKNIAYGLKKRKVDKKEIE------RKVLEIAEMLGIDHLLNRKPET--LSGGEQQ 136
Query: 976 RLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFES 1035
R+ IA LV NP I+ +DEP S LD R + ++ I V + + +
Sbjct: 137 RVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWAL 196
Query: 1036 FDELLFMKRGGELIYAG 1052
D++ M G+LI G
Sbjct: 197 ADKVAIM-LNGKLIQVG 212
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 71.3 bits (175), Expect = 2e-12
Identities = 63/216 (29%), Positives = 99/216 (45%), Gaps = 24/216 (11%)
Query: 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE 898
D ++L N+ +PG +VG SG+GK+TL +L T G + + G
Sbjct: 467 PDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQ--HGQVLVDGVDLAIA 524
Query: 899 TFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSG 958
A + G+ + E++LFS +R I L A E V+ +L
Sbjct: 525 DPAWLR--------RQMGVVLQENVLFSRSIR--DNIALCNPGAPFEHVIHAAKLAGAHD 574
Query: 959 ALIGLP-GIN--------GLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMR 1009
+ LP G N LS QR+R+ IA LV NP I+ DE TS LD + A++MR
Sbjct: 575 FISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMR 634
Query: 1010 TVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 1045
+R I GRT++ H+ + + D ++ +++G
Sbjct: 635 NMREICR-GRTVIIIAHR--LSTVRACDRIIVLEKG 667
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 68.0 bits (167), Expect = 2e-12
Identities = 58/220 (26%), Positives = 98/220 (44%), Gaps = 41/220 (18%)
Query: 854 PGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGY-------PKRQETFARIS 904
G + A++G SG+GK+TL+ ++ G R +G+I I G + E R+
Sbjct: 33 RGEILAILGGSGSGKSTLLRLILGLLRPD----KGEILIDGEDIPQLSEEELYEIRKRM- 87
Query: 905 GYCEQNDIHSPGLTVLESLLFS--AWLRLPSEIELETQRAFVEE-VMELVELTSLSGALI 961
G Q LTV E++ F +LP + + E V+ +EL +
Sbjct: 88 GVLFQQGALFSSLTVFENVAFPLREHTKLP--------ESLIRELVLMKLEL-------V 132
Query: 962 GLPGING------LSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIV 1015
GL G LS RKR+ +A + +P ++F+DEPTSGLD +A ++ +R +
Sbjct: 133 GLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELN 192
Query: 1016 NT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054
+ G T++ H + D + + G++I G
Sbjct: 193 DALGLTVIMVTHDLDS-LLTIADRVAVLAD-GKVIAEGTP 230
|
Length = 263 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 68.5 bits (168), Expect = 3e-12
Identities = 54/206 (26%), Positives = 101/206 (49%), Gaps = 21/206 (10%)
Query: 853 RPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIE---GDIYISGYPKRQETFARISGYC-E 908
PG + L+G +GAGKTT ++ G ++E G+I +G P QE RI GY E
Sbjct: 26 PPGEIFGLLGPNGAGKTTTFRMILG-----LLEPTEGEITWNGGPLSQEIKNRI-GYLPE 79
Query: 909 QNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGING 968
+ ++ P +TV + L + A L+ + E++ + ++ +E +E+ I
Sbjct: 80 ERGLY-PKMTVEDQLKYLAELKGMPKAEIQKK---LQAWLERLEIVGKKTKKI-----KE 130
Query: 969 LSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQP 1028
LS ++++ ++ P ++ +DEP SGLD ++ + + G TI+ + H+
Sbjct: 131 LSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRM 190
Query: 1029 SIDIFESFDELLFMKRGGELIYAGPL 1054
+ E D LL +K+ G+ + G +
Sbjct: 191 E-HVEELCDRLLMLKK-GQTVLYGTV 214
|
Length = 300 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 67.9 bits (166), Expect = 3e-12
Identities = 74/276 (26%), Positives = 114/276 (41%), Gaps = 56/276 (20%)
Query: 138 LRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRL-----GHHLQVS 192
L + R +R IL DLS I P R+T LLG +GK+TLL ALAG L +V+
Sbjct: 7 LHVARRHR---AILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVT 63
Query: 193 GKITYNGHGFKEFVPPRTS---AYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITEL 249
G +T NG PR + A + Q + RE + +Y
Sbjct: 64 GDVTLNGEPLAAIDAPRLARLRAVLPQAAQPAFAFSAREIVLLG--------RYPH---- 111
Query: 250 ARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISG 309
ARR AG D +I ++ AL G A LVG ++ +SG
Sbjct: 112 ARR---AGALTHRDGEIAWQALALAG-------------------ATALVGRDVTT-LSG 148
Query: 310 GQKKRLTTGELL---------VGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTT 360
G+ R+ +L P R L +DE + LD + ++++ ++ R +
Sbjct: 149 GELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWN-LG 207
Query: 361 VISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVL 396
V++++ A D + +L++G IV G VL
Sbjct: 208 VLAIVHDPNLAARHADRIAMLADGAIVAHGAPADVL 243
|
Length = 272 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 67.8 bits (166), Expect = 3e-12
Identities = 63/210 (30%), Positives = 103/210 (49%), Gaps = 30/210 (14%)
Query: 855 GVLTALVGVSGAGKTTLMDVLAGRKTGGIIE---GDIYISG----YPKRQETFARIS-GY 906
G + AL+G +GAGK+TL GI++ G++ I G Y K+ R + G
Sbjct: 28 GEMVALLGPNGAGKSTLF-----LHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTVGI 82
Query: 907 CEQN---DIHSPGLTVLESLLFSAW-LRLPSEIELETQRAFVEEVMELVELTSLSGALIG 962
QN + +P TV E + F L L E E+E + V E ++ + G
Sbjct: 83 VFQNPDDQLFAP--TVEEDVAFGPLNLGLSKE-EVE------KRVKEALKAVGMEGFENK 133
Query: 963 LPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIV 1022
P + LS Q+KR+ IA L P I+ +DEPTSGLD A+ +M+ + ++ G TI+
Sbjct: 134 PP--HHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITII 191
Query: 1023 CTIHQPSIDIFESFDELLFMKRGGELIYAG 1052
+ H +D+ + + +++ G++I G
Sbjct: 192 ISTHD--VDLVPVYADKVYVMSDGKIIKEG 219
|
Length = 275 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 66.4 bits (163), Expect = 4e-12
Identities = 49/206 (23%), Positives = 73/206 (35%), Gaps = 49/206 (23%)
Query: 136 RQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKI 195
L RG R + LS + +L GP SGKTTLL +AG L +G I
Sbjct: 6 EDLACVRGGR---VLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLL---PPAAGTI 59
Query: 196 TYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKI 255
+G + Y+ ++ +TV E L+F
Sbjct: 60 KLDGGDIDDPDVAEACHYLGHRNAMKPALTVAENLEFW---------------------- 97
Query: 256 AGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRL 315
A E+LDI ++ +GL A G +S GQK+R+
Sbjct: 98 AAFLGGEELDI----------------AAALEAVGLAPLAHLPFGY-----LSAGQKRRV 136
Query: 316 TTGELLVGPARVLFMDEISNGLDSST 341
LLV + +DE + LD++
Sbjct: 137 ALARLLVSNRPIWILDEPTAALDAAA 162
|
Length = 207 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 67.5 bits (165), Expect = 4e-12
Identities = 62/202 (30%), Positives = 95/202 (47%), Gaps = 17/202 (8%)
Query: 853 RPGVLTALVGVSGAGKTTL---MDVLAGRKTGGIIEGDIYISGYP--KRQETFARI---- 903
+PG + A++G SG+GKTTL +++L + G I GDI I +Q+ R
Sbjct: 27 KPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIRQLRQH 86
Query: 904 SGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGL 963
G+ QN P TVLE+++ P ++ E + EL+ L+G
Sbjct: 87 VGFVFQNFNLFPHRTVLENIIEG-----PVIVKGEPKEEATARARELLAKVGLAGKETSY 141
Query: 964 PGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVC 1023
P LS Q++R+ IA L P ++ DEPTS LD V+ T+R + RT+V
Sbjct: 142 P--RRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVI 199
Query: 1024 TIHQPSIDIFESFDELLFMKRG 1045
H+ S + D +FM +G
Sbjct: 200 VTHEMSF-ARDVADRAIFMDQG 220
|
Length = 250 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 67.0 bits (164), Expect = 4e-12
Identities = 59/205 (28%), Positives = 97/205 (47%), Gaps = 22/205 (10%)
Query: 855 GVLTALVGVSGAGKTTLMDVLAGRKTGGII---EGDIYISGY-P-KRQETF-ARISGYCE 908
G + +G +GAGKTT + +L+G ++ G++ ++G P KR++ F RI
Sbjct: 47 GEIVGFIGPNGAGKTTTLKILSG-----LLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFG 101
Query: 909 QNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGING 968
Q L V++S L ++ + ++E+ EL++L L+ P +
Sbjct: 102 QKTQLWWDLPVIDSFYL---LAAIYDLPPARFKKRLDELSELLDL----EELLDTP-VRQ 153
Query: 969 LSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIV-NTGRTIVCTIHQ 1027
LS QR R IA L+ P I+F+DEPT GLD A + ++ G T++ T H
Sbjct: 154 LSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHY 213
Query: 1028 PSIDIFESFDELLFMKRGGELIYAG 1052
DI E+ + + G L+Y G
Sbjct: 214 MK-DI-EALARRVLVIDKGRLLYDG 236
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 66.3 bits (163), Expect = 5e-12
Identities = 61/273 (22%), Positives = 98/273 (35%), Gaps = 64/273 (23%)
Query: 135 LRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGK 194
+ L G K IL +S + + LLG +GKTTLL + G SG
Sbjct: 3 VENLNAGYG---KSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMG---LLPPRSGS 56
Query: 195 ITYNGHGFKEFVPPRTS----AYVSQQDWQV-AEMTVRETLDFAGQCQGVGSKYDMITEL 249
I ++G P + YV + ++ E+TV E L
Sbjct: 57 IRFDGRDITGLPPHERARAGIGYV-PEGRRIFPELTVEENLLLGAY-------------- 101
Query: 250 ARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILG--LDTCADTLVGDEMLKGI 307
ARR + + ++F L A TL
Sbjct: 102 ARRRAKRKARLERVYELF-------------------PRLKERRKQLAGTL--------- 133
Query: 308 SGGQKKRLTTGELLVGPARVLFMDEISNGLD---SSTTYQIIKYLKHSTRALDGTTVISL 364
SGG+++ L L+ ++L +DE S GL ++ I+ L+ G T++ +
Sbjct: 134 SGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDE-----GVTILLV 188
Query: 365 LQPAPEAYELFDDVILLSEGQIVYQGPRVSVLD 397
Q A A E+ D +L G++V +G +L
Sbjct: 189 EQNARFALEIADRAYVLERGRVVLEGTAAELLA 221
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 65.6 bits (161), Expect = 6e-12
Identities = 64/247 (25%), Positives = 101/247 (40%), Gaps = 73/247 (29%)
Query: 150 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPR 209
L D++ + L ++GP SGK++LL AL G L SG ++ G
Sbjct: 20 TLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKL---SGSVSVPG---------- 66
Query: 210 TSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKP---DEDLDI 266
+ AYVSQ+ W + T+RE + F G +D R EK+ IK + DL+I
Sbjct: 67 SIAYVSQEPW-IQNGTIRENILF-------GKPFDE----ERYEKV--IKACALEPDLEI 112
Query: 267 FMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGI--SGGQKKRLTTGELLVGP 324
G T +G+ KGI SGGQK+R++ +
Sbjct: 113 ----LPDGDL--------------------TEIGE---KGINLSGGQKQRISLARAVYSD 145
Query: 325 ARVLFMDEISNGLDSSTTYQIIKY------LKHSTRALDGTTVISLLQPAPEAYELFDDV 378
A + +D+ + +D+ I + L + TR L T + LL A D +
Sbjct: 146 ADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRIL-VTHQLQLLPHA-------DQI 197
Query: 379 ILLSEGQ 385
++L G+
Sbjct: 198 VVLDNGR 204
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 67.0 bits (164), Expect = 6e-12
Identities = 69/240 (28%), Positives = 112/240 (46%), Gaps = 33/240 (13%)
Query: 851 AFRPGVLTALVGVSGAGKTTLMDVLAGR----KTGGIIEGDIYISGYPKRQETFARISGY 906
+ G +TAL+G +G GK+TL+ A R ++G + GD IS RQ AR
Sbjct: 24 SLPTGKITALIGPNGCGKSTLLKCFA-RLLTPQSGTVFLGDKPISMLSSRQ--LARRLAL 80
Query: 907 CEQNDIHSPGLTVLE------SLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGAL 960
Q+ + G+TV E S S W RL +E A V + ME + L+
Sbjct: 81 LPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAE-----DNARVNQAMEQTRINHLADRR 135
Query: 961 IGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRT 1020
+ LS QR+R +A+ L + +V +DEPT+ LD +MR +R + G+T
Sbjct: 136 L-----TDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKT 190
Query: 1021 IVCTIHQPSIDIFES---FDELLFMKRGGELIYAG-PLGSKSCELIK-YFEVESFMFKSP 1075
+V +H D+ ++ D L+ + G ++ G P + L++ F+VE+ + P
Sbjct: 191 VVTVLH----DLNQASRYCDHLVVLA-NGHVMAQGTPEEVMTPGLLRTVFDVEAEIHPEP 245
|
Length = 255 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 64.8 bits (159), Expect = 6e-12
Identities = 43/203 (21%), Positives = 77/203 (37%), Gaps = 62/203 (30%)
Query: 845 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGYPKRQETFAR 902
L V+ + R G + AL+G +GAGK+TLM +L+G + G+I + G
Sbjct: 16 LDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPD----SGEILVDGKEVS------ 65
Query: 903 ISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIG 962
SP + +RA + V +L
Sbjct: 66 ---------FASPR---------------------DARRAGIAMVYQL------------ 83
Query: 963 LPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIV 1022
S +R+ + IA L N ++ +DEPT+ L + + +R + G ++
Sbjct: 84 -------SVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVI 136
Query: 1023 CTIHQPSIDIFESFDELLFMKRG 1045
H+ ++FE D + ++ G
Sbjct: 137 FISHRLD-EVFEIADRVTVLRDG 158
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 67.7 bits (166), Expect = 7e-12
Identities = 63/242 (26%), Positives = 105/242 (43%), Gaps = 34/242 (14%)
Query: 830 VELKQ-----EGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGG 882
+EL+ + L +V+ G + ++G SGAGK+TL+ ++ R T G
Sbjct: 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSG 61
Query: 883 --IIEGDIY--ISGYPKRQETFARISGYCEQNDIHSPGL----TVLESLLFSAWLRLPSE 934
++G +S RQ + G Q+ L TV E++ F P E
Sbjct: 62 SVFVDGQDLTALSEAELRQ--LRQKIGMIFQH----FNLLSSRTVFENVAF------PLE 109
Query: 935 IELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDE 994
+ + + V EL+EL LS P LS Q++R+ IA L NP I+ DE
Sbjct: 110 LAGVPKAEIKQRVAELLELVGLSDKADRYPA--QLSGGQKQRVAIARALANNPKILLCDE 167
Query: 995 PTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESF-DELLFMKRGGELIYAG 1052
TS LD ++ +++I G TIV H+ +++ + D + + + G L+ G
Sbjct: 168 ATSALDPETTQSILELLKDINRELGLTIVLITHE--MEVVKRICDRVAVLDQ-GRLVEEG 224
Query: 1053 PL 1054
+
Sbjct: 225 TV 226
|
Length = 339 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 66.0 bits (162), Expect = 8e-12
Identities = 54/186 (29%), Positives = 90/186 (48%), Gaps = 18/186 (9%)
Query: 847 NVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIE-GDIYISGYP--KRQETFA 901
V+ + + G + L+G +GAGKTT ++ G + G I I+ P KR A
Sbjct: 18 GVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKR----A 73
Query: 902 RIS-GYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGAL 960
R+ GY Q LTV E++L +R S+ E E + +EE++E +T L +
Sbjct: 74 RLGIGYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEK---LEELLEEFHITHLRKS- 129
Query: 961 IGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRT 1020
LS +R+R+ IA L NP + +DEP +G+D A + + ++ + + G
Sbjct: 130 ---KAS-SLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIG 185
Query: 1021 IVCTIH 1026
++ T H
Sbjct: 186 VLITDH 191
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 65.7 bits (161), Expect = 9e-12
Identities = 67/272 (24%), Positives = 102/272 (37%), Gaps = 64/272 (23%)
Query: 135 LRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAG--RLGHHLQVS 192
LR L +Y G++ L D+S I +T L+GP GK+TLL L L
Sbjct: 3 LRDLNVYYGDK---HALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDE 59
Query: 193 GKITYNGHG-FKEFVPP----RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMIT 247
G++ +G + V R V Q+ ++ + + +
Sbjct: 60 GEVLLDGKDIYDLDVDVLELRRRVGMVFQKP-NPFPGSIYDNVAYG-------------- 104
Query: 248 ELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGL-DTCADTLVGDEMLKG 306
++ GIK E+LD VE ++ L D D L +
Sbjct: 105 -----LRLHGIKLKEELD--------------ERVEEALRKAALWDEVKDRLHALGL--- 142
Query: 307 ISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQI---IKYLKHSTRALDGTTVI- 362
SGGQ++RL L VL +DE ++ LD +T +I I LK T VI
Sbjct: 143 -SGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKEY-----TIVIV 196
Query: 363 --SLLQPAPEAYELFDDVILLSEGQIVYQGPR 392
++ Q A + D L G++V GP
Sbjct: 197 THNMQQ----AARVADRTAFLLNGRLVEFGPT 224
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 66.0 bits (161), Expect = 1e-11
Identities = 68/265 (25%), Positives = 102/265 (38%), Gaps = 45/265 (16%)
Query: 137 QLRIYRGN--RSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGK 194
LR+ R + I+D + P LT LLGP SGK+TLL LAG L +G
Sbjct: 1 GLRLSRVSWSAGGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALR---PDAGT 57
Query: 195 ITYNG---HGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELAR 251
+ G HG R A V Q +TVR+ + + +
Sbjct: 58 VDLAGVDLHGLSRRARARRVALVEQDSDTAVPLTVRDVV--------------ALGRIPH 103
Query: 252 REKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQ 311
R AG P + VV+ + L AD + +SGG+
Sbjct: 104 RSLWAGDSPHDAA----------------VVDRALARTELSHLAD-----RDMSTLSGGE 142
Query: 312 KKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEA 371
++R+ L ++L +DE +N LD + + + A G TV++ L A
Sbjct: 143 RQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALV--RELAATGVTVVAALHDLNLA 200
Query: 372 YELFDDVILLSEGQIVYQGPRVSVL 396
D V++L G++V GP VL
Sbjct: 201 ASYCDHVVVLDGGRVVAAGPPREVL 225
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 66.9 bits (164), Expect = 1e-11
Identities = 74/292 (25%), Positives = 117/292 (40%), Gaps = 63/292 (21%)
Query: 130 MTEALLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHL 189
M E L+ +R G+ +L D++ I +LLGP GK+TLL +AG L
Sbjct: 1 MAELELKNVRKSFGS---FEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAG-----L 52
Query: 190 QV--SGKITYNGHGFKEFVPP--RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDM 245
+ SG+I +G +PP R A V Q MTV E + F
Sbjct: 53 EEPTSGEILIDGR-DVTDLPPEKRGIAMVFQNYALYPHMTVYENIAFG------------ 99
Query: 246 ITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLK 305
L K+ G+ E + + K+LGL+ +
Sbjct: 100 ---L----KLRGVPKAEIDKRVKE---------------VAKLLGLEHLLNRKP-----L 132
Query: 306 GISGGQKKRLTTGELLVGPARVLFMDE-ISNGLDSSTTYQIIKYLKHSTRALDGTTVISL 364
+SGGQ++R+ LV +V +DE +SN LD+ + +K L GTT I +
Sbjct: 133 QLSGGQRQRVALARALVRKPKVFLLDEPLSN-LDAKLRVLMRSEIKKLHERL-GTTTIYV 190
Query: 365 LQPAPEAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFL 416
EA L D ++++++G+I G + + + P VA F+
Sbjct: 191 THDQVEAMTLADRIVVMNDGRIQQVGTPLELYE--------RPANLFVAGFI 234
|
Length = 338 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 65.6 bits (160), Expect = 1e-11
Identities = 64/260 (24%), Positives = 105/260 (40%), Gaps = 47/260 (18%)
Query: 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGF-KEFVP 207
LDD++ + L LLGP SGK+TLL +AG L SG+I NG +
Sbjct: 14 QALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAG-LEQ--PDSGRIRLNGQDATRVHAR 70
Query: 208 PRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIF 267
R +V Q +TVR+ + F G + + + +
Sbjct: 71 DRKIGFVFQHYALFKHLTVRDNIAF-------GLEIRKHPKAKIKAR------------- 110
Query: 268 MKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARV 327
VE +++++ L +GD +SGGQ++R+ L +V
Sbjct: 111 --------------VEELLELVQL-----EGLGDRYPNQLSGGQRQRVALARALAVEPQV 151
Query: 328 LFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIV 387
L +DE LD+ ++ +L+ + TTV + EA E+ D ++++S G+I
Sbjct: 152 LLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVF-VTHDQEEAMEVADRIVVMSNGKIE 210
Query: 388 YQGPRVSVLDFFAS---MGF 404
G V D A+ M F
Sbjct: 211 QIGSPDEVYDHPANPFVMSF 230
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 65.9 bits (161), Expect = 1e-11
Identities = 49/161 (30%), Positives = 72/161 (44%), Gaps = 18/161 (11%)
Query: 844 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKT---GGIIEGDIYISGYPKRQETF 900
L +V+ G L ++G SG GKTTL++++AG T G I I G +
Sbjct: 20 ALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAER--- 76
Query: 901 ARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGAL 960
G QN+ P L V++++ F LR IE +R +++ LV L
Sbjct: 77 ----GVVFQNEALLPWLNVIDNVAFGLQLR---GIEKAQRREIAHQMLALVGLEGAEHKY 129
Query: 961 IGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDA 1001
I LS R+R+ IA L P ++ +DEP LDA
Sbjct: 130 IW-----QLSGGMRQRVGIARALAVEPQLLLLDEPFGALDA 165
|
Length = 259 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 64.8 bits (158), Expect = 1e-11
Identities = 54/207 (26%), Positives = 84/207 (40%), Gaps = 30/207 (14%)
Query: 830 VELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGD 887
+E + D L ++ G + G +G+GKTTL+ +LAG G
Sbjct: 1 LEADELTCERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPL----AGR 56
Query: 888 IYISGYPKRQE--TFARISGYCEQNDIHSPG----LTVLESLLFSAWLRLPSEIELETQR 941
+ ++G P + + AR Y H+PG L+VLE+L F W S
Sbjct: 57 VLLNGGPLDFQRDSIARGLLYLG----HAPGIKTTLSVLENLRF--WHADHS-------D 103
Query: 942 AFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDA 1001
VEE + V L + LS Q++R+ +A L++ + +DEPT+ LD
Sbjct: 104 EQVEEALARVGLNGFEDRPV-----AQLSAGQQRRVALARLLLSGRPLWILDEPTTALDK 158
Query: 1002 RAAAIVMRTVRNIVNTGRTIVCTIHQP 1028
A + G +V T HQ
Sbjct: 159 AGVARFAEAMAGHCARGGMVVLTTHQD 185
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 65.8 bits (161), Expect = 1e-11
Identities = 48/167 (28%), Positives = 82/167 (49%), Gaps = 21/167 (12%)
Query: 845 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGG--IIEGDIYISGYPKRQETF 900
L +++ + PG L L+G +GAGKTTLMDV+ G R G + +GD ++ P+ +
Sbjct: 21 LNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHR--I 78
Query: 901 ARISGYCEQNDIHS--PGLTVLESLLF------SAWLRLPSEIELETQRAFVEEVMELVE 952
AR G + + LTV E+L S + L + + +R ++E++ +
Sbjct: 79 ARA-GIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARL-RAEERRRIDELLATIG 136
Query: 953 LTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGL 999
L L L LS Q++ L I + L +P ++ +DEP +G+
Sbjct: 137 LGDERDRLAAL-----LSHGQKQWLEIGMLLAQDPKLLLLDEPVAGM 178
|
Length = 249 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 65.3 bits (160), Expect = 1e-11
Identities = 48/163 (29%), Positives = 75/163 (46%), Gaps = 23/163 (14%)
Query: 847 NVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYP-------KRQET 899
V+ + G L+G SG GKTTL+ ++AG +T G+I + G KR
Sbjct: 18 GVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFET--PTSGEILLDGKDITNLPPHKRP-- 73
Query: 900 FARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGA 959
QN P LTV E++ F L+ + E+ + V E ++LV+L +
Sbjct: 74 ----VNTVFQNYALFPHLTVFENIAFGLRLKKLPKAEI---KERVAEALDLVQLEGYANR 126
Query: 960 LIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDAR 1002
+ LS Q++R+ IA LV P ++ +DEP LD +
Sbjct: 127 KP-----SQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLK 164
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 66.1 bits (161), Expect = 1e-11
Identities = 49/179 (27%), Positives = 83/179 (46%), Gaps = 18/179 (10%)
Query: 855 GVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHS 914
G + ALVGV+G+GK+TL L G + G I I G P RQ + Y Q++
Sbjct: 33 GSIAALVGVNGSGKSTLFKALMGFVR--LASGKISILGQPTRQALQKNLVAYVPQSEEVD 90
Query: 915 PGLTVL-ESLLFSA------WLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGIN 967
VL E ++ WLR + + R V + V++ IG
Sbjct: 91 WSFPVLVEDVVMMGRYGHMGWLRRAKKRD----RQIVTAALARVDMVEFRHRQIG----- 141
Query: 968 GLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIH 1026
LS Q+KR+ +A + ++ +DEP +G+D + A ++ +R + + G+T++ + H
Sbjct: 142 ELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTH 200
|
Length = 272 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 65.3 bits (160), Expect = 1e-11
Identities = 62/227 (27%), Positives = 93/227 (40%), Gaps = 47/227 (20%)
Query: 852 FRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFARISGYCE 908
PG ALVG SG GK+T++ +L + G+I + G R G
Sbjct: 26 IPPGKTVALVGSSGCGKSTVVSLL--ERFYDPTSGEILLDGVDIRDLNLRWLRSQIGLVS 83
Query: 909 QNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLP---- 964
Q E +LF + I A EEV E + ++ ++ LP
Sbjct: 84 Q-----------EPVLFDGTIA--ENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYD 130
Query: 965 ---GING--LSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGR 1019
G G LS Q++R+ IA L+ NP I+ +DE TS LDA + +V + + GR
Sbjct: 131 TLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAM-KGR 189
Query: 1020 TIVCTIHQPS-------IDIFE--------SFDELLFMKRGGELIYA 1051
T + H+ S I + + + DEL M + G +YA
Sbjct: 190 TTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDEL--MAQKG--VYA 232
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 64.5 bits (158), Expect = 2e-11
Identities = 59/261 (22%), Positives = 99/261 (37%), Gaps = 58/261 (22%)
Query: 137 QLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKIT 196
L + G +L+D+S ++P ++GP +GK+TLL A+ G L SG I
Sbjct: 4 DLTVSYGGH---PVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPT---SGSIR 57
Query: 197 YNGHGFKEFVPPRTS----AYVSQQ---DWQVAEMTVRETLDFAGQCQGVGSKYDMITEL 249
G P YV Q+ D ++VR+ + +
Sbjct: 58 VFG------KPLEKERKRIGYVPQRRSIDRD-FPISVRDVV-----------------LM 93
Query: 250 ARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISG 309
+ + V+ ++ +GL AD +G+ +SG
Sbjct: 94 GLYGHKGLFRRL-------------SKADKAKVDEALERVGLSELADRQIGE-----LSG 135
Query: 310 GQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAP 369
GQ++R+ LV +L +DE G+D T I + L+ R +G T++ +
Sbjct: 136 GQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRR--EGMTILVVTHDLG 193
Query: 370 EAYELFDDVILLSEGQIVYQG 390
E FD V+LL +V G
Sbjct: 194 LVLEYFDRVLLL-NRTVVASG 213
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 67.7 bits (166), Expect = 2e-11
Identities = 66/248 (26%), Positives = 106/248 (42%), Gaps = 52/248 (20%)
Query: 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPP 208
L DL+ I+ +LT L+G +GK+TLL L G L G+I NG ++ P
Sbjct: 335 PALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPT---QGEIRVNGIDLRDLSPE 391
Query: 209 ---RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLD 265
+ ++VSQ + A T+RE + A + + I + + P D
Sbjct: 392 AWRKQISWVSQNPYLFAG-TIRENILLAR----PDASDEEIIAALDQAGLLEFVPKPD-- 444
Query: 266 IFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPA 325
GLDT ++G+ G+SGGQ +RL L+ PA
Sbjct: 445 ------------------------GLDT----VIGEGG-AGLSGGQAQRLALARALLSPA 475
Query: 326 RVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISL---LQPAPEAYELFDDVILLS 382
+L +DE + LD+ T I++ L TV+ + L+ A +A D +++L
Sbjct: 476 SLLLLDEPTAHLDAETEQIILQAL---QELAKQKTVLVITHRLEDAADA----DRIVVLD 528
Query: 383 EGQIVYQG 390
G++V QG
Sbjct: 529 NGRLVEQG 536
|
Length = 559 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 62.0 bits (151), Expect = 2e-11
Identities = 33/133 (24%), Positives = 55/133 (41%), Gaps = 18/133 (13%)
Query: 869 TTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARIS----GYCEQNDIHSPGLTVLESLL 924
+TL+ ++ G G I + G + ++ G Q+ P LTV E+L
Sbjct: 1 STLLKLITGLLQ--PTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLF 58
Query: 925 FSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELV 984
F + A EE +E V L + + LS Q++R+ IA L+
Sbjct: 59 FGL--------RDKEADARAEEALERVGLPDF----LDREPVGTLSGGQKQRVAIARALL 106
Query: 985 ANPSIVFMDEPTS 997
P ++ +DEPT+
Sbjct: 107 KKPKLLLLDEPTA 119
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 64.2 bits (157), Expect = 2e-11
Identities = 57/200 (28%), Positives = 84/200 (42%), Gaps = 32/200 (16%)
Query: 845 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISG-----YPKRQET 899
L +V+ R G L G SGAGKTTL+ +L G T G + I+G RQ
Sbjct: 18 LHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPS--RGQVRIAGEDVNRLRGRQLP 75
Query: 900 FARIS-GYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELT---- 954
R G Q+ P TV E++ L + + E E QR V + V L
Sbjct: 76 LLRRRIGVVFQDFRLLPDRTVYENVALP--LEVRGKKEREIQRR-VGAALRQVGLEHKAD 132
Query: 955 ----SLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRT 1010
LSG EQ +R+ IA +V +P ++ DEPT LD + ++
Sbjct: 133 AFPEQLSGG------------EQ-QRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDL 179
Query: 1011 VRNIVNTGRTIVCTIHQPSI 1030
++ + G T++ H S+
Sbjct: 180 LKRLNKRGTTVIVATHDLSL 199
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 63.9 bits (156), Expect = 3e-11
Identities = 56/240 (23%), Positives = 91/240 (37%), Gaps = 56/240 (23%)
Query: 160 PSRLTLLLGPPSSGKTTLLLALAG--RLGHHLQVSGKITYNGHGF-----KEFVPP--RT 210
+T + G +GK+TLL +AG + G I NG K +PP R
Sbjct: 22 NEEVTGIFGASGAGKSTLLRCIAGLEKPDG-----GTIVLNGTVLFDSRKKINLPPQQRK 76
Query: 211 SAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKS 270
V QQ + VRE L F +K
Sbjct: 77 IGLVFQQYALFPHLNVRENLAFG----------------------------------LKR 102
Query: 271 FALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFM 330
+ S V+ ++ +LGLD + +SGG+K+R+ L +L +
Sbjct: 103 KRNREDRIS--VDELLDLLGLDHLLNRYPA-----QLSGGEKQRVALARALAAQPELLLL 155
Query: 331 DEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQG 390
DE + LD + Q++ LK + L+ VI + EA L D ++++ +G++ Y G
Sbjct: 156 DEPFSALDRALRLQLLPELKQIKKNLNI-PVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 65.0 bits (159), Expect = 3e-11
Identities = 53/257 (20%), Positives = 102/257 (39%), Gaps = 46/257 (17%)
Query: 137 QLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKIT 196
L + G + IL+DLS + ++T L+GP GK+TLL A L SG +
Sbjct: 7 NLTVGYGTK---RILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLL---TPQSGTVF 60
Query: 197 YNGHGFKEFVPPRTSAYVS---QQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARRE 253
+ + ++ Q +TVRE + +
Sbjct: 61 LGDKPISMLSSRQLARRLALLPQHHLTPEGITVRELVAY--------------------- 99
Query: 254 KIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKK 313
G P ++ + + + V M+ ++ AD + D +SGGQ++
Sbjct: 100 ---GRSP------WLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTD-----LSGGQRQ 145
Query: 314 RLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYE 373
R +L V+ +DE + LD + ++++ ++ G TV+++L +A
Sbjct: 146 RAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRE--LNTQGKTVVTVLHDLNQASR 203
Query: 374 LFDDVILLSEGQIVYQG 390
D +++L+ G ++ QG
Sbjct: 204 YCDHLVVLANGHVMAQG 220
|
Length = 255 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 64.5 bits (158), Expect = 3e-11
Identities = 51/213 (23%), Positives = 84/213 (39%), Gaps = 41/213 (19%)
Query: 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE 898
E + ++L V + G + A++G +G+GK+TL + G + EG+I G
Sbjct: 14 EGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDG------ 67
Query: 899 TFARISGYCEQNDIHSPGLTVLESL---LFSAWLRLPSEIE-----------LETQRAFV 944
DI L+ E +F A+ P EI + +R
Sbjct: 68 -----------EDILE--LSPDERARAGIFLAFQY-PVEIPGVTNSDFLRAAMNARRGAR 113
Query: 945 EEVMELVELTSLSGALIGLP------GIN-GLSTEQRKRLTIAVELVANPSIVFMDEPTS 997
+ E ++ L+GL +N G S ++KR I L+ P + +DEP S
Sbjct: 114 GILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDS 173
Query: 998 GLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSI 1030
GLD A IV + + GR ++ H +
Sbjct: 174 GLDIDALKIVAEGINALREEGRGVLIITHYQRL 206
|
Length = 251 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 63.0 bits (154), Expect = 4e-11
Identities = 64/251 (25%), Positives = 97/251 (38%), Gaps = 51/251 (20%)
Query: 139 RIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYN 198
I + ILDDLS + + L G +GKTTL LAG + + SG I N
Sbjct: 4 NISFSYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIK---ESSGSILLN 60
Query: 199 GHGFKEFVPPRTSAYVSQQ-DWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAG 257
G K ++ YV Q D+Q+ +VRE EL K
Sbjct: 61 GKPIKAKERRKSIGYVMQDVDYQLFTDSVRE-------------------ELLLGLKELD 101
Query: 258 IKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTT 317
++ E ++K L L + +SGGQK+RL
Sbjct: 102 AGNEQ-------------------AETVLKDLDLYALKERHPLS-----LSGGQKQRLAI 137
Query: 318 GELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPE-AYELFD 376
L+ +L DE ++GLD ++ + ++ A G VI ++ E ++ D
Sbjct: 138 AAALLSGKDLLIFDEPTSGLDYKNMERVGELIREL--AAQGKAVI-VITHDYEFLAKVCD 194
Query: 377 DVILLSEGQIV 387
V+LL+ G IV
Sbjct: 195 RVLLLANGAIV 205
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 66.8 bits (164), Expect = 4e-11
Identities = 62/223 (27%), Positives = 99/223 (44%), Gaps = 35/223 (15%)
Query: 845 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGYPKRQ---ET 899
L NV+ RPG A++G G+GK+TL+ +L G + T EG + + G RQ
Sbjct: 481 LDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPT----EGSVLLDGVDIRQIDPAD 536
Query: 900 FARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGA 959
R GY Q+ LF LR I L A EE++ EL ++
Sbjct: 537 LRRNIGYVPQD-----------PRLFYGTLR--DNIALGAPYADDEEILRAAELAGVTEF 583
Query: 960 LIGLP---------GINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRT 1010
+ P LS QR+ + +A L+ +P I+ +DEPTS +D R+
Sbjct: 584 VRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDR 643
Query: 1011 VRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGP 1053
++ + G+T+V H+ S + + D ++ M G ++ GP
Sbjct: 644 LKRWL-AGKTLVLVTHRTS--LLDLVDRIIVM-DNGRIVADGP 682
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 65.8 bits (160), Expect = 4e-11
Identities = 56/199 (28%), Positives = 85/199 (42%), Gaps = 20/199 (10%)
Query: 854 PGVLTALVGVSGAGKTTLMDVLAG-----RKTGGIIEGDIYISGYPKRQETFARISGYCE 908
G L AL+G SG GKTTL+ +AG TG I D ++ P + A +
Sbjct: 30 AGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRGLALLF---- 85
Query: 909 QNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGING 968
QN P L V +++ F + + ++ E V + ++L L A LP
Sbjct: 86 QNYALFPHLKVEDNVAFGLRAQKMPKADIA------ERVADALKLVGLGDAAAHLP--AQ 137
Query: 969 LSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNT--GRTIVCTIH 1026
LS ++R+ IA + P ++ +DEP S LDA A + + + TI+C H
Sbjct: 138 LSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTH 197
Query: 1027 QPSIDIFESFDELLFMKRG 1045
D D+ MK G
Sbjct: 198 DQD-DALTLADKAGIMKDG 215
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 63.7 bits (155), Expect = 4e-11
Identities = 49/164 (29%), Positives = 73/164 (44%), Gaps = 19/164 (11%)
Query: 844 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRK------TGGIIEGDIYISGYPKRQ 897
LL NV G + L+G SG GK+TL+ + G TG + + + P Q
Sbjct: 17 LLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQ 76
Query: 898 ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLS 957
R G Q+ + P L+V ++LLF+ LP+ ++ +R +E L
Sbjct: 77 ----RQIGILFQDALLFPHLSVGQNLLFA----LPATLKGNARRNAANAALERSGLD--- 125
Query: 958 GALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDA 1001
GA P LS QR R+ + L+A P + +DEP S LD
Sbjct: 126 GAFHQDP--ATLSGGQRARVALLRALLAQPKALLLDEPFSRLDV 167
|
Length = 213 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 63.4 bits (155), Expect = 4e-11
Identities = 50/149 (33%), Positives = 72/149 (48%), Gaps = 21/149 (14%)
Query: 860 LVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISG------YPKRQETFARISGYCEQNDIH 913
L+G SG GKTT + ++AG + G IYI G PK R QN
Sbjct: 31 LLGPSGCGKTTTLRMIAGLEE--PTSGRIYIGGRDVTDLPPKD-----RDIAMVFQNYAL 83
Query: 914 SPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQ 973
P +TV +++ F LR + E++ + V EV EL+++ L L P LS Q
Sbjct: 84 YPHMTVYDNIAFGLKLRKVPKDEIDER---VREVAELLQIEHL---LDRKP--KQLSGGQ 135
Query: 974 RKRLTIAVELVANPSIVFMDEPTSGLDAR 1002
R+R+ + +V P + MDEP S LDA+
Sbjct: 136 RQRVALGRAIVREPKVFLMDEPLSNLDAK 164
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 64.1 bits (156), Expect = 4e-11
Identities = 58/211 (27%), Positives = 99/211 (46%), Gaps = 17/211 (8%)
Query: 847 NVTGAFRPGVLTALVGVSGAGKTTLMDVLAG---RKTGGIIEGDIYISGYPKRQETFARI 903
+V+ G + L+G +GAGKTT ++ G R G II D IS P I
Sbjct: 21 DVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGI 80
Query: 904 SGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGL 963
GY Q L+V ++L+ A L++ ++ E + E+ME + L ++
Sbjct: 81 -GYLPQEASIFRRLSVYDNLM--AVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMG-- 135
Query: 964 PGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVC 1023
LS +R+R+ IA L ANP + +DEP +G+D + + R + ++ ++G ++
Sbjct: 136 ---QSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLI 192
Query: 1024 TIHQPSIDIFESFD--ELLFMKRGGELIYAG 1052
T H ++ E+ E ++ G LI G
Sbjct: 193 TDH----NVRETLAVCERAYIVSQGHLIAHG 219
|
Length = 241 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 64.4 bits (157), Expect = 6e-11
Identities = 70/267 (26%), Positives = 111/267 (41%), Gaps = 55/267 (20%)
Query: 130 MTEALL--RQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGH 187
M+ A + R + G++ ++D LS ++ LLGP +GKTT L L LG
Sbjct: 3 MSVAPIDFRNVEKRYGDK---LVVDGLSFHVQRGECFGLLGPNGAGKTTTLRML---LGL 56
Query: 188 HLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMIT 247
+G I+ G E VP R + A V GV ++D
Sbjct: 57 THPDAGSISLCG----EPVPSRA---------RHARQRV-----------GVVPQFD--- 89
Query: 248 ELARREKIAGIKPD----EDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEM 303
+ PD E+L +F + F L +V +++ L+ AD VG+
Sbjct: 90 ---------NLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGE-- 138
Query: 304 LKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVIS 363
+SGG K+RLT LV VL +DE + GLD + + + L+ G T++
Sbjct: 139 ---LSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLAR--GKTILL 193
Query: 364 LLQPAPEAYELFDDVILLSEGQIVYQG 390
EA L D + ++ EG+ + +G
Sbjct: 194 TTHFMEEAERLCDRLCVIEEGRKIAEG 220
|
Length = 306 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 62.9 bits (154), Expect = 6e-11
Identities = 53/230 (23%), Positives = 97/230 (42%), Gaps = 51/230 (22%)
Query: 829 PVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEG 886
E + L+D +N+ G L A+VG G+GK++L+ L G K G
Sbjct: 12 SGEQETSFTLKD-----INLE--VPKGELVAIVGPVGSGKSSLLSALLGELEKL----SG 60
Query: 887 DIYISGYPKRQETFARISGYCEQNDIHSPGL---TVLESLLFSAWLRLPSEIELETQRAF 943
+ + G I+ Y Q P + T+ E++LF + +R
Sbjct: 61 SVSVPG---------SIA-YVSQ----EPWIQNGTIRENILFGK--------PFDEER-- 96
Query: 944 VEEVME----LVELTSLSGAL---IGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPT 996
E+V++ +L L IG GIN LS Q++R+++A + ++ I +D+P
Sbjct: 97 YEKVIKACALEPDLEILPDGDLTEIGEKGIN-LSGGQKQRISLARAVYSDADIYLLDDPL 155
Query: 997 SGLDAR-AAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 1045
S +DA I + ++ +T + HQ + + D+++ + G
Sbjct: 156 SAVDAHVGRHIFENCILGLLLNNKTRILVTHQ--LQLLPHADQIVVLDNG 203
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 64.0 bits (157), Expect = 6e-11
Identities = 53/199 (26%), Positives = 82/199 (41%), Gaps = 33/199 (16%)
Query: 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ET 899
LL +V+ RPG + A++G +GAGK+TL+ L+G + G++ ++G P
Sbjct: 16 TLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPD--SGEVRLNGRPLADWSPAE 73
Query: 900 FARISGYCEQNDIHSPGLTVLESLLFS-------AWLRLPSEIELETQRAFVEEVMELVE 952
AR Q HS SL F A R P + A V + V+
Sbjct: 74 LARRRAVLPQ---HS-------SLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVD 123
Query: 953 LTSLSGALIGLPGINGLSTEQRKRLTIAVELV------ANPSIVFMDEPTSGLDARAAAI 1006
L L+G LS +++R+ +A L P + +DEPTS LD
Sbjct: 124 LAHLAGRD-----YPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHH 178
Query: 1007 VMRTVRNIVNTGRTIVCTI 1025
V+R R + + V +
Sbjct: 179 VLRLARQLAHERGLAVIVV 197
|
Length = 258 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 64.7 bits (158), Expect = 6e-11
Identities = 67/228 (29%), Positives = 103/228 (45%), Gaps = 32/228 (14%)
Query: 854 PGVLTALVGVSGAGKTTLMDVLAGRKTGGII--EGDIYISGY-P-KRQETFARISGYCEQ 909
G + +G +GAGK+T + +L TG ++ G + ++G P +R+E + R G
Sbjct: 49 KGEIVGFLGANGAGKSTTLKML----TGLLLPTSGKVRVNGKDPFRRREEYLRSIGLVMG 104
Query: 910 N------DIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGL 963
D L L+SL L+L EI F E + L E+ L G L
Sbjct: 105 QKLQLWWD-----LPALDSLEV---LKLIYEIP---DDEFAERLDFLTEILDLEGFL-KW 152
Query: 964 PGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNT-GRTIV 1022
P + LS QR R +A L+ P ++F+DEPT GLD A A + ++ T++
Sbjct: 153 P-VRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVL 211
Query: 1023 CTIHQPSIDIFESFDELLFMKRGGELIYAGPLGS--KSCELIKYFEVE 1068
T H DI D +L + + G+L++ G L + K F VE
Sbjct: 212 LTTHIFD-DIATLCDRVLLIDQ-GQLVFDGTLAQLQEQFGPYKEFSVE 257
|
Length = 325 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 64.6 bits (158), Expect = 6e-11
Identities = 68/250 (27%), Positives = 102/250 (40%), Gaps = 43/250 (17%)
Query: 847 NVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIE---GDIYISGYPKRQE---TF 900
+V G L+G SG+GKTT + + +IE G+I I G
Sbjct: 19 DVNLTIEEGEFLVLIGPSGSGKTTTL-----KMINRLIEPTSGEILIDGEDISDLDPVEL 73
Query: 901 ARISGYCEQNDIHSPGLTVLESLLF----SAWLRLPSEIELETQRAFVEEVMELVELTSL 956
R GY Q P LTV E++ W + E + +E+++LV L
Sbjct: 74 RRKIGYVIQQIGLFPHLTVAENIATVPKLLGWDK-------ERIKKRADELLDLVGLDP- 125
Query: 957 SGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNI-V 1015
S P + LS Q++R+ +A L A+P I+ MDEP LD + ++ +
Sbjct: 126 SEYADRYP--HELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQK 183
Query: 1016 NTGRTIVCTIHQPSIDIFESF---DELLFMKRGGELI-YAGPLGSKSCELIKYFE---VE 1068
G+TIV H DI E+ D + M GE++ Y P E++ VE
Sbjct: 184 ELGKTIVFVTH----DIDEALKLADRIAVMD-AGEIVQYDTPD-----EILANPANDFVE 233
Query: 1069 SFMFKSPRIF 1078
F +S R
Sbjct: 234 DFFGESERGL 243
|
Length = 309 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 65.7 bits (161), Expect = 7e-11
Identities = 48/207 (23%), Positives = 91/207 (43%), Gaps = 22/207 (10%)
Query: 853 RPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIY-----ISGYPKRQET--FARI 903
PG + +VG SG+GK+TL L G + G I G++ + G +R+ +
Sbjct: 33 EPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKR 92
Query: 904 SGYCEQNDIHS--PGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLS-GAL 960
Q+ + S P +T+ + + + L ++ + +EL+E L
Sbjct: 93 IAMIFQDPMTSLNPVMTIGDQIREALRLHGKG-----SRAEARKRAVELLEQVGLPDPER 147
Query: 961 IG-LPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIV-NTG 1018
P + LS R+R+ IA+ L P ++ DEPT+ LD A ++ ++++ G
Sbjct: 148 RDRYP--HQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELG 205
Query: 1019 RTIVCTIHQPSIDIFESFDELLFMKRG 1045
++ H + + E D ++ M +G
Sbjct: 206 MAVLFITHDLGV-VAELADRVVVMYKG 231
|
Length = 539 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 63.3 bits (154), Expect = 7e-11
Identities = 62/215 (28%), Positives = 98/215 (45%), Gaps = 30/215 (13%)
Query: 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGYPKRQETF 900
+L +V+ PG +TALVG SG+GK+T++ +L + G G + + G P
Sbjct: 28 LVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQG----GQVLLDGKP------ 77
Query: 901 ARISGYCEQNDIHSPGLTV-LESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGA 959
IS Y E +HS V E +LF+ L+ I Q E V E +
Sbjct: 78 --ISQY-EHKYLHSKVSLVGQEPVLFARSLQ--DNIAYGLQSCSFECVKEAAQKAHAHSF 132
Query: 960 LIGLP-------GING--LSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRT 1010
+ L G G LS Q++R+ IA L+ NP ++ +DE TS LDA + V +
Sbjct: 133 ISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQA 192
Query: 1011 VRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 1045
+ + RT++ H+ + E D++L + G
Sbjct: 193 LYD-WPERRTVLVIAHR--LSTVERADQILVLDGG 224
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 62.8 bits (153), Expect = 8e-11
Identities = 62/254 (24%), Positives = 102/254 (40%), Gaps = 50/254 (19%)
Query: 141 YRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGH 200
+R + + +D +S ++P +T LLGP +GKTT L LAG L +G T +G
Sbjct: 11 FRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPD---AGFATVDG- 66
Query: 201 GFKEFVPPRTS----AYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIA 256
F P + +VS +T RE L++ +
Sbjct: 67 -FDVVKEPAEARRRLGFVSDSTGLYDRLTARENLEYFA-------------------GLY 106
Query: 257 GIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLT 316
G+K DE +E + LG++ D VG G S G ++++
Sbjct: 107 GLKGDELTA---------------RLEELADRLGMEELLDRRVG-----GFSTGMRQKVA 146
Query: 317 TGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFD 376
LV VL +DE + GLD T + ++++ G ++ E L D
Sbjct: 147 IARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRAL--GKCILFSTHIMQEVERLCD 204
Query: 377 DVILLSEGQIVYQG 390
V++L G++VY+G
Sbjct: 205 RVVVLHRGRVVYEG 218
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 63.9 bits (155), Expect = 8e-11
Identities = 62/219 (28%), Positives = 96/219 (43%), Gaps = 21/219 (9%)
Query: 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGYPKR---- 896
+L + F +T LVG +G GK+TL L+G R G + Y KR
Sbjct: 15 PVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLA 74
Query: 897 -QETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTS 955
++ A + EQ ++ + + FS LR E E R V+E + LV+
Sbjct: 75 LRQQVATVFQDPEQQIFYT---DIDSDIAFS--LRNLGVPEAEITRR-VDEALTLVDAQH 128
Query: 956 LSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIV 1015
I LS Q+KR+ IA LV + +DEPT+GLD ++ +R IV
Sbjct: 129 FRHQ-----PIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIV 183
Query: 1016 NTGRTIVCTIHQPSID-IFESFDELLFMKRGGELIYAGP 1053
G ++ + H ID I+E D + +++G L + P
Sbjct: 184 AQGNHVIISSH--DIDLIYEISDAVYVLRQGQILTHGAP 220
|
Length = 271 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 63.1 bits (154), Expect = 9e-11
Identities = 64/215 (29%), Positives = 91/215 (42%), Gaps = 37/215 (17%)
Query: 847 NVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIE---GDIYISGYPKRQET---F 900
N+ G L+G SG+GKTT M + +IE G+I+I G R++
Sbjct: 19 NLNLEIAKGEFLVLIGPSGSGKTTTM-----KMINRLIEPTSGEIFIDGEDIREQDPVEL 73
Query: 901 ARISGYCEQNDIHSPGLTVLE------SLLFSAWLRLPSEIELETQRAFVEEVMELVELT 954
R GY Q P +TV E LL W + E R +E++ LV L
Sbjct: 74 RRKIGYVIQQIGLFPHMTVEENIALVPKLL--KWPK-------EKIRERADELLALVGLD 124
Query: 955 SLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNI 1014
A P LS Q++R+ +A L A+P ++ MDEP LD + + +
Sbjct: 125 PAEFAD-RYPH--ELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRL 181
Query: 1015 VNT-GRTIVCTIHQPSIDIFESF---DELLFMKRG 1045
G+TIV H DI E+F D + MK G
Sbjct: 182 QQELGKTIVFVTH----DIDEAFRLADRIAIMKNG 212
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 62.7 bits (153), Expect = 1e-10
Identities = 64/263 (24%), Positives = 105/263 (39%), Gaps = 48/263 (18%)
Query: 135 LRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGK 194
L+ + + R + IL DLS + P ++GP +GKTTLL L G H SG
Sbjct: 34 LKNVSVRRNGK---KILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTG---EHPPSSGD 87
Query: 195 ITYNGHGF-KEFVPP---RTSAYVS---QQDWQVAEMTVRETLDFAGQCQGVGSKYDMIT 247
+T G F K + VS + ++V E TVR+ + + + I
Sbjct: 88 VTLLGRRFGKGETIFELRKRIGLVSSELHERFRVRE-TVRDVV--------LSGFFASIG 138
Query: 248 ELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGI 307
EDL ++++++LG AD G +
Sbjct: 139 IYQEDLT------AEDLAA---------------AQWLLELLGAKHLADRPFGS-----L 172
Query: 308 SGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQP 367
S G+++R+ LV +L +DE + GLD Q++ L+ + ++ +
Sbjct: 173 SQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHH 232
Query: 368 APEAYELFDDVILLSEGQIVYQG 390
A E F +LL EG++V QG
Sbjct: 233 AEEIPPCFTHRLLLKEGEVVAQG 255
|
Length = 257 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 62.5 bits (152), Expect = 1e-10
Identities = 61/190 (32%), Positives = 87/190 (45%), Gaps = 43/190 (22%)
Query: 834 QEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGY 893
QEG ++ +L NV+ + G + A+VG SG+GK+TL+ +L G T GD+ +G
Sbjct: 16 QEGSVQT--DVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTP--TSGDVIFNGQ 71
Query: 894 P-------KRQETFARISGYCEQNDIHSPGLTVLES----LLFSAWLRLPSEIELETQRA 942
P + E + G+ Q P T LE+ LL + P+EI RA
Sbjct: 72 PMSKLSSAAKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGK--KKPAEIN---SRA 126
Query: 943 FVEEVMELVEL--------TSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDE 994
E++ V L + LSG +R+R+ IA LV NP +V DE
Sbjct: 127 L--EMLAAVGLEHRANHRPSELSGG-------------ERQRVAIARALVNNPRLVLADE 171
Query: 995 PTSGLDARAA 1004
PT LDAR A
Sbjct: 172 PTGNLDARNA 181
|
Length = 233 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 63.7 bits (156), Expect = 1e-10
Identities = 60/238 (25%), Positives = 103/238 (43%), Gaps = 40/238 (16%)
Query: 859 ALVGVSGAGKTTLMDVLAG---RKTGGIIEGDIYISG---YPKRQETFARISG----YCE 908
+VG SG+GK+ L + G + I+ G+I G ++ +I G
Sbjct: 35 GIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIF 94
Query: 909 QNDIHS--PGLTV----LESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIG 962
Q+ + S P +T+ E L + S+ E + +RA E++ELV + L
Sbjct: 95 QDPMTSLNPVMTIGDQIAEVLRLH--GKGLSKKEAK-ERAI--ELLELVGIPDPERRLKS 149
Query: 963 LPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVN-TGRTI 1021
P + LS R+R+ IA+ L NP ++ DEPT+ LD A ++ ++ + G +
Sbjct: 150 YP--HELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTAL 207
Query: 1022 VCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGSKSCELIKYFEVESFMFKSPRIFY 1079
+ H + + E D + M YAG +++ VE FK+P+ Y
Sbjct: 208 ILITHDLGV-VAEIADRVAVM-------YAG-------RIVEEGPVEEI-FKNPKHPY 249
|
Length = 316 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 61.7 bits (151), Expect = 2e-10
Identities = 63/275 (22%), Positives = 101/275 (36%), Gaps = 75/275 (27%)
Query: 135 LRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGK 194
LR L G R T+L + +R + ++GP SGK+TLL + G L SG+
Sbjct: 3 LRGLTKSFGGR---TVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLR---PDSGE 56
Query: 195 ITYNGH-----GFKEFVP-PRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITE 248
+ +G E R + Q +TV E + F + S+ + I E
Sbjct: 57 VLIDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSE-EEIRE 115
Query: 249 LARREKIA--GIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKG 306
+ EK+ G++ EDL
Sbjct: 116 IVL-EKLEAVGLRGAEDL--------------------------------------YPAE 136
Query: 307 ISGGQKKRLTTGELLVGPAR-------VLFMDEISNGLDSSTTYQIIKYLKHSTRALDGT 359
+SGG KKR V AR +L DE + GLD + I ++ + L T
Sbjct: 137 LSGGMKKR-------VALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLT 189
Query: 360 TVI---SLLQPAPEAYELFDDVILLSEGQIVYQGP 391
+++ L A+ + D + +L +G+IV +G
Sbjct: 190 SIMVTHDL----DTAFAIADRIAVLYDGKIVAEGT 220
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 61.9 bits (151), Expect = 2e-10
Identities = 67/251 (26%), Positives = 104/251 (41%), Gaps = 60/251 (23%)
Query: 151 LDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRT 210
LDD+S +RP R LLGP +GK+T L +L RL + Q G+I+ GH + P
Sbjct: 17 LDDVSFTVRPGRFVALLGPNGAGKST-LFSLLTRL-YVAQ-EGQISVAGHDLRR-APRAA 72
Query: 211 SAY---VSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIF 267
A V QQ +++VR+ L + G L+R E A I E L
Sbjct: 73 LARLGVVFQQPTLDLDLSVRQNLRYHAALHG----------LSRAEARARI--AELLA-- 118
Query: 268 MKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARV 327
LGL AD V + ++GG ++R+ L+ +
Sbjct: 119 --------------------RLGLAERADDKVRE-----LNGGHRRRVEIARALLHRPAL 153
Query: 328 LFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELF------DDVILL 381
L +DE + GLD ++ I ++ RAL +S+L A L D +++L
Sbjct: 154 LLLDEPTVGLDPASRAAITAHV----RALARDQGLSVLW----ATHLVDEIEADDRLVVL 205
Query: 382 SEGQIVYQGPR 392
G+++ G
Sbjct: 206 HRGRVLADGAA 216
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 61.7 bits (151), Expect = 2e-10
Identities = 56/190 (29%), Positives = 86/190 (45%), Gaps = 21/190 (11%)
Query: 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG---RKTGGIIEGDIYISGYPKRQ 897
++Q L V+ G + AL+G +GAGKTTL+ + G ++G II I+G P
Sbjct: 15 KIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLP--- 71
Query: 898 ETFARIS---GYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELV-EL 953
R Y + P LTV E+LL A+ R E Q +EEV EL L
Sbjct: 72 -PHERARLGIAYVPEGRRIFPRLTVEENLLLGAYARRDK----EAQERDLEEVYELFPRL 126
Query: 954 TSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRN 1013
G LS +++ L IA L++ P ++ +DEP+ GL + + ++
Sbjct: 127 KERRNQRAGT-----LSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKE 181
Query: 1014 IV-NTGRTIV 1022
+ G TI+
Sbjct: 182 LRKEGGMTIL 191
|
Length = 237 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 64.5 bits (158), Expect = 2e-10
Identities = 47/190 (24%), Positives = 83/190 (43%), Gaps = 27/190 (14%)
Query: 845 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGYPKRQETFAR 902
+V+ + + G + AL+G +GAGK+TLM +L G + G+I + G R
Sbjct: 20 NDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPD----SGEIRVDGKE------VR 69
Query: 903 ISGYCEQND-----IHS-----PGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVE 952
I + +H P LTV E+++ I+ RA ++E+ E
Sbjct: 70 IKSPRDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYG 129
Query: 953 LTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVR 1012
L A + LS +++R+ I L ++ +DEPT+ L + A + +R
Sbjct: 130 LPVDPDAKVA-----DLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILR 184
Query: 1013 NIVNTGRTIV 1022
+ G+TI+
Sbjct: 185 RLAAEGKTII 194
|
Length = 501 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 64.7 bits (158), Expect = 2e-10
Identities = 55/215 (25%), Positives = 89/215 (41%), Gaps = 30/215 (13%)
Query: 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGR---KTGGIIEGDIYISGYPKRQET 899
+ L N G A++G SG+GK+TL+ +LAG + G I + I+ + Q
Sbjct: 352 KALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDE-QAL 410
Query: 900 FARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGA 959
IS ++ LFS LR + L A EE+ ++ L
Sbjct: 411 RETISVLTQRVH------------LFSGTLR--DNLRLANPDASDEELWAALQQVGLEKL 456
Query: 960 LIGLP-GIN--------GLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRT 1010
L P G+N LS +R+RL +A L+ + + +DEPT GLD V+
Sbjct: 457 LESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLAL 516
Query: 1011 VRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 1045
+ G+T++ H+ E D ++ + G
Sbjct: 517 LFEHAE-GKTLLMVTHRLR--GLERMDRIIVLDNG 548
|
Length = 573 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 61.9 bits (151), Expect = 2e-10
Identities = 58/214 (27%), Positives = 93/214 (43%), Gaps = 30/214 (14%)
Query: 845 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFA--- 901
L +++ G ALVG SG+GK+TL++++ + + G I I G+ R T A
Sbjct: 18 LRDISLDIPAGETVALVGPSGSGKSTLVNLIP--RFYDVDSGRILIDGHDVRDYTLASLR 75
Query: 902 RISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALI 961
R G Q + LF+ + I A EEV E + ++
Sbjct: 76 RQIGLVSQ-----------DVFLFNDTVA--ENIAYGRPGATREEVEEAARAANAHEFIM 122
Query: 962 GLP-------GING--LSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVR 1012
LP G G LS QR+R+ IA L+ +P I+ +DE TS LD + +V +
Sbjct: 123 ELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALE 182
Query: 1013 NIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGG 1046
++ RT H+ S E+ D ++ ++ G
Sbjct: 183 RLM-KNRTTFVIAHRLS--TIENADRIVVLEDGK 213
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 62.3 bits (152), Expect = 2e-10
Identities = 51/166 (30%), Positives = 74/166 (44%), Gaps = 21/166 (12%)
Query: 844 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGYP----KRQ 897
L NV+ G +VG SG+GK+TL +LAG + + G I + G P KR
Sbjct: 22 ALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPS----SGSILLDGKPLAPKKRA 77
Query: 898 ETFARISGYCEQNDIHS--PGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTS 955
+ F R Q+ S P TV L S+ + + E+++ V L
Sbjct: 78 KAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQR-----IAELLDQVGLPP 132
Query: 956 LSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDA 1001
L P + LS QR+R+ IA L+ P ++ +DEPTS LD
Sbjct: 133 --SFLDRRP--HELSGGQRQRIAIARALIPEPKLLILDEPTSALDV 174
|
Length = 252 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 61.4 bits (150), Expect = 2e-10
Identities = 57/212 (26%), Positives = 94/212 (44%), Gaps = 21/212 (9%)
Query: 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISG--YPKRQET 899
+L + + G + ++G SG+GK+TL+ + + G I I G ++
Sbjct: 13 FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEE--PDSGTIIIDGLKLTDDKKN 70
Query: 900 FARIS---GYCEQNDIHSPGLTVLESLLFS-AWLRLPSEIELETQRAFVEEVMELVELTS 955
+ G Q P LTVLE++ + ++ S+ E E E +EL+E
Sbjct: 71 INELRQKVGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAE------ERALELLEKVG 124
Query: 956 LSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIV 1015
L+ P LS Q++R+ IA L NP ++ DEPTS LD V+ ++++
Sbjct: 125 LADKADAYPA--QLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLA 182
Query: 1016 NTGRTIVCTIHQPSIDIF--ESFDELLFMKRG 1045
G T+V H+ F E D ++FM G
Sbjct: 183 EEGMTMVVVTHEMG---FAREVADRVIFMDDG 211
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 60.7 bits (148), Expect = 3e-10
Identities = 58/243 (23%), Positives = 100/243 (41%), Gaps = 48/243 (19%)
Query: 150 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPP- 208
LD +S + + LLGP +GKTTL+ LA SG I +G +
Sbjct: 15 ALDGVSLTL-GPGMYGLLGPNGAGKTTLMRILATLTP---PSSGTIRIDGQDVLKQPQKL 70
Query: 209 -RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIF 267
R Y+ Q+ TVRE LD+ +G+ SK E+ R
Sbjct: 71 RRRIGYLPQEFGVYPNFTVREFLDYIAWLKGIPSK-----EVKAR--------------- 110
Query: 268 MKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARV 327
V+ +++++ L A +G +SGG ++R+ + LVG +
Sbjct: 111 --------------VDEVLELVNLGDRAKKKIG-----SLSGGMRRRVGIAQALVGDPSI 151
Query: 328 LFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIV 387
L +DE + GLD + I++ + + VI + L + V +L++G++V
Sbjct: 152 LIVDEPTAGLDPE---ERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLV 208
Query: 388 YQG 390
++G
Sbjct: 209 FEG 211
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 59.6 bits (145), Expect = 3e-10
Identities = 24/83 (28%), Positives = 46/83 (55%), Gaps = 2/83 (2%)
Query: 303 MLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVI 362
+ +SGGQ++R+ L+ +L +DE ++GLD ++ ++++ L+ A +G TVI
Sbjct: 77 YVPQLSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRE--LAEEGRTVI 134
Query: 363 SLLQPAPEAYELFDDVILLSEGQ 385
+ A D VI+L +G+
Sbjct: 135 IVTHDPELAELAADRVIVLKDGK 157
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Score = 61.4 bits (150), Expect = 3e-10
Identities = 50/159 (31%), Positives = 81/159 (50%), Gaps = 22/159 (13%)
Query: 853 RPGVLTALVGVSGAGKTTLMDVLAGRKT----GGIIEGDIYISGYPKRQETFARISGYCE 908
PG L ++G +GAGKTT+MDV+ G KT G ++ G ++G P+ Q AR +G
Sbjct: 26 DPGELRVIIGPNGAGKTTMMDVITG-KTRPDEGSVLFGGTDLTGLPEHQ--IAR-AGIGR 81
Query: 909 --QNDIHSPGLTVLESLLFSA------WLRLPSEIELETQRAFVEEVMELVELTSLSGAL 960
Q LTV E+L + + L + ++ +EEV+E + L + L
Sbjct: 82 KFQKPTVFENLTVFENLELALPRDKSVFASLFFRLS-AEEKDRIEEVLETIGLADEADRL 140
Query: 961 IGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGL 999
GL LS Q++ L I + L+ +P ++ +DEP +G+
Sbjct: 141 AGL-----LSHGQKQWLEIGMLLMQDPKLLLLDEPVAGM 174
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242 |
| >gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Score = 61.5 bits (150), Expect = 3e-10
Identities = 53/189 (28%), Positives = 81/189 (42%), Gaps = 44/189 (23%)
Query: 854 PGVLTALVGVSGAGKTTLMDVLAGR--KTGGIIE--------GDIYISGYPKRQETFARI 903
PG + +VG SG+GKTTL++ L+ R G + D+Y +R+
Sbjct: 31 PGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAERRRLLRTE 90
Query: 904 SGYCEQNDIH------SPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVEL---- 953
G+ Q+ S G + E L+ R +I RA + +E VE+
Sbjct: 91 WGFVHQHPRDGLRMQVSAGGNIGERLMAVGA-RHYGDI-----RATAGDWLERVEIDAAR 144
Query: 954 -----TSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVM 1008
T+ SG + ++RL IA LV +P +VFMDEPT GLD A ++
Sbjct: 145 IDDLPTTFSGGM-------------QQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLL 191
Query: 1009 RTVRNIVNT 1017
+R +V
Sbjct: 192 DLLRGLVRE 200
|
Length = 258 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 61.4 bits (149), Expect = 3e-10
Identities = 61/210 (29%), Positives = 93/210 (44%), Gaps = 28/210 (13%)
Query: 853 RPGVLTALVGVSGAGKTTLMDVLAGR---KTGGI-------IEGDIYISGYPKRQETFAR 902
PG + +VG SG+GK+TL+ LAGR G E ++Y +R+
Sbjct: 27 YPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAERRRLMRT 86
Query: 903 ISGYCEQNDIH------SPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSL 956
G+ QN S G + E L+ + R I RA ++ +E VE+
Sbjct: 87 EWGFVHQNPRDGLRMRVSAGANIGERLM-AIGARHYGNI-----RATAQDWLEEVEIDP- 139
Query: 957 SGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIV- 1015
+ LP S ++RL IA LV P +VFMDEPT GLD A ++ +R +V
Sbjct: 140 -TRIDDLP--RAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVR 196
Query: 1016 NTGRTIVCTIHQPSIDIFESFDELLFMKRG 1045
+ G ++ H + + LL M++G
Sbjct: 197 DLGLAVIIVTHDLGVARLLA-QRLLVMQQG 225
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 63.7 bits (156), Expect = 4e-10
Identities = 64/256 (25%), Positives = 108/256 (42%), Gaps = 57/256 (22%)
Query: 151 LDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPP-- 208
LD++S IRP ++G SGK+TLL L G G + +G ++ P
Sbjct: 481 LDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQ---PTEGSVLLDGVDIRQIDPADL 537
Query: 209 -RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIF 267
R YV QD ++ T+R+ + G D E+ R ++AG + F
Sbjct: 538 RRNIGYV-PQDPRLFYGTLRDNIAL-----GAPYADD--EEILRAAELAG------VTEF 583
Query: 268 MKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARV 327
++ G D +G E + +SGGQ++ + L+ +
Sbjct: 584 VRRHPDG--------------------LDMQIG-ERGRSLSGGQRQAVALARALLRDPPI 622
Query: 328 LFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVI------SLLQPAPEAYELFDDVILL 381
L +DE ++ +D+ + + LK R L G T++ SLL +L D +I++
Sbjct: 623 LLLDEPTSAMDNRSEERFKDRLK---RWLAGKTLVLVTHRTSLL-------DLVDRIIVM 672
Query: 382 SEGQIVYQGPRVSVLD 397
G+IV GP+ VL+
Sbjct: 673 DNGRIVADGPKDQVLE 688
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 62.4 bits (152), Expect = 4e-10
Identities = 53/155 (34%), Positives = 81/155 (52%), Gaps = 20/155 (12%)
Query: 854 PGV-LTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISG---YPKRQETF----ARISG 905
PG +TA+ G SG+GKTTL+ ++AG EG+I ++G + R+ F R G
Sbjct: 21 PGQGVTAIFGRSGSGKTTLIRLIAGLTRPD--EGEIVLNGRTLFDSRKGIFLPPEKRRIG 78
Query: 906 YCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPG 965
Y Q P L+V +L + PSE +R E V+EL+ + L L LPG
Sbjct: 79 YVFQEARLFPHLSVRGNLRYGMKRARPSE-----RRISFERVIELLGIGHL---LGRLPG 130
Query: 966 INGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLD 1000
LS +++R+ I L+++P ++ MDEP + LD
Sbjct: 131 --RLSGGEKQRVAIGRALLSSPRLLLMDEPLAALD 163
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 60.5 bits (147), Expect = 5e-10
Identities = 49/182 (26%), Positives = 87/182 (47%), Gaps = 19/182 (10%)
Query: 847 NVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGYPKRQETFARIS 904
N++ + L+G +GAGK+TL+ ++ G R T G+I G+P ++ +I
Sbjct: 18 NISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPT----SGEIIFDGHPWTRKDLHKIG 73
Query: 905 GYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLP 964
E ++ LT E+L L L R ++EV+ +V+LT+ G
Sbjct: 74 SLIESPPLYE-NLTARENLKVHTTLL-----GLPDSR--IDEVLNIVDLTN-----TGKK 120
Query: 965 GINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCT 1024
S ++RL IA+ L+ +P ++ +DEPT+GLD + +R+ G T++ +
Sbjct: 121 KAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILS 180
Query: 1025 IH 1026
H
Sbjct: 181 SH 182
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 63.1 bits (154), Expect = 5e-10
Identities = 55/215 (25%), Positives = 96/215 (44%), Gaps = 33/215 (15%)
Query: 845 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIE--GDIYISGYPKRQ---ET 899
L ++ + + G A++G SG+GK+TL ++ G G + + G +Q ET
Sbjct: 334 LRGISFSLQAGEALAIIGPSGSGKSTLARLI----VGIWPPTSGSVRLDGADLKQWDRET 389
Query: 900 FARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGA 959
F + GY Q D+ LF + I + A E+++E +L +
Sbjct: 390 FGKHIGYLPQ-DVE----------LFPG--TVAENIARFGENADPEKIIEAAKLAGVHEL 436
Query: 960 LIGLP---------GINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRT 1010
++ LP G LS QR+R+ +A L +P +V +DEP S LD +
Sbjct: 437 ILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANA 496
Query: 1011 VRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 1045
++ + G T+V H+PS + D++L ++ G
Sbjct: 497 IKALKARGITVVVITHRPS--LLGCVDKILVLQDG 529
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 60.2 bits (147), Expect = 6e-10
Identities = 58/265 (21%), Positives = 97/265 (36%), Gaps = 62/265 (23%)
Query: 141 YRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGH 200
+ + LDD+S I+ L+G SGK+TL A+ LG SG I ++G
Sbjct: 11 FPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAI---LGLLKPTSGSIIFDGK 67
Query: 201 -----GFKEFVPPRTS-AYVSQQDWQVA---EMTVRETLDFAGQCQGVGSKYDMITELAR 251
+ R V QD + MT+ E + + G SK + + A
Sbjct: 68 DLLKLSRRLRKIRRKEIQMVF-QDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEAR-KEAV 125
Query: 252 REKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQ 311
+ G+ E+ + + E+ SGGQ
Sbjct: 126 LLLLVGVGLPEE---VLNRYP----------------------------HEL----SGGQ 150
Query: 312 KKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVI------SLL 365
++R+ L ++L DE ++ LD S QI+ LK L G T++ +
Sbjct: 151 RQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEEL-GLTLLFITHDLGV- 208
Query: 366 QPAPEAYELFDDVILLSEGQIVYQG 390
++ D V ++ G+IV +G
Sbjct: 209 -----VAKIADRVAVMYAGKIVEEG 228
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 60.3 bits (147), Expect = 6e-10
Identities = 48/202 (23%), Positives = 84/202 (41%), Gaps = 16/202 (7%)
Query: 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE 898
ED+ ++L V + G + A++G +G+GK+TL +AG + + G I G Q+
Sbjct: 11 EDK-EILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKG----QD 65
Query: 899 TF-------ARISGYCE-QNDIHSPGLTVLESLLFSAWLRLPSEIELETQ-RAFVEEVME 949
AR + Q PG++ LE L + R + E F++ +
Sbjct: 66 LLELEPDERARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKA 125
Query: 950 LVELTSLSGALIGLPGIN-GLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVM 1008
+ L + + +N G S ++KR I + P + +DE SGLD A IV
Sbjct: 126 KLALLGMDEEFLN-RSVNEGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVA 184
Query: 1009 RTVRNIVNTGRTIVCTIHQPSI 1030
+ + R+ + H +
Sbjct: 185 EGINRLREPDRSFLIITHYQRL 206
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 60.9 bits (147), Expect = 7e-10
Identities = 58/218 (26%), Positives = 103/218 (47%), Gaps = 23/218 (10%)
Query: 845 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIE-GDIYISGYPKRQE--- 898
L ++ + G TAL+G +G+GK+TL+ L G + T G + GDI +S K++E
Sbjct: 22 LFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81
Query: 899 ---TFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVM-ELVELT 954
+ + E TVL+ + F P + ++A E++ E +E+
Sbjct: 82 VRKKVGVVFQFPESQLFEE---TVLKDVAFG-----PQNFGIPKEKA--EKIAAEKLEMV 131
Query: 955 SLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNI 1014
L+ LS Q +R+ IA L P ++ +DEPT+GLD +A +M+ +I
Sbjct: 132 GLADEFWEKSPFE-LSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESI 190
Query: 1015 VNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAG 1052
+G+T+V H +D + + +++ G +I G
Sbjct: 191 HQSGQTVVLVTHL--MDDVADYADYVYLLEKGHIISCG 226
|
Length = 288 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 59.9 bits (146), Expect = 8e-10
Identities = 59/226 (26%), Positives = 98/226 (43%), Gaps = 44/226 (19%)
Query: 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLM-------DVLAGRKTGGIIEGDIYIS 891
+ +L +V+ G A+VG SG+GK+T++ DV +G I I
Sbjct: 11 DPGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGS---------ILID 61
Query: 892 GYPKR---QETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVM 948
G R ++ R G Q+ TVL F+ + I A EEV+
Sbjct: 62 GQDIREVTLDSLRRAIGVVPQD-------TVL----FNDTIG--YNIRYGRPDATDEEVI 108
Query: 949 ELVELTSLSGALIGLP-------GING--LSTEQRKRLTIAVELVANPSIVFMDEPTSGL 999
E + + ++ P G G LS +++R+ IA ++ NP I+ +DE TS L
Sbjct: 109 EAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSAL 168
Query: 1000 DARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 1045
D + +R+ V+ GRT + H+ S I + D+++ +K G
Sbjct: 169 DTHTEREIQAALRD-VSKGRTTIVIAHRLS-TIVNA-DKIIVLKDG 211
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 62.7 bits (153), Expect = 8e-10
Identities = 56/188 (29%), Positives = 79/188 (42%), Gaps = 40/188 (21%)
Query: 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYP---- 894
D +L +V+ PG A+VG SG+GK+TL+ +L G +T G ++ G
Sbjct: 463 PDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPES--GSVFYDGQDLAGL 520
Query: 895 -----KRQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVME 949
+RQ G QN G ++ E++ A L L +E E
Sbjct: 521 DVQAVRRQ------LGVVLQNGRLMSG-SIFENIAGGAPLTL-------------DEAWE 560
Query: 950 LVELTSLSGALIGLP---------GINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLD 1000
+ L+ + +P G LS QR+RL IA LV P I+ DE TS LD
Sbjct: 561 AARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALD 620
Query: 1001 ARAAAIVM 1008
R AIV
Sbjct: 621 NRTQAIVS 628
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 60.9 bits (148), Expect = 8e-10
Identities = 52/186 (27%), Positives = 86/186 (46%), Gaps = 23/186 (12%)
Query: 848 VTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGYPKRQETFA--RI 903
V+ + G + +G +GAGK+T M ++ G G ++ + G Q R
Sbjct: 21 VSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQ----VCGEDVLQNPKEVQRN 76
Query: 904 SGYCEQNDIHSP---GLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGAL 960
GY + H+P + V E L F A + L+ + VEE++ELV L
Sbjct: 77 IGYLPE---HNPLYLDMYVREYLQFIAGIYGMKGQLLKQR---VEEMIELVGLRPEQHKK 130
Query: 961 IGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRT 1020
IG LS R+R+ +A L+ +P ++ +DEPT+GLD + ++NI +T
Sbjct: 131 IG-----QLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNI-GKDKT 184
Query: 1021 IVCTIH 1026
I+ + H
Sbjct: 185 IILSTH 190
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 62.4 bits (152), Expect = 9e-10
Identities = 57/215 (26%), Positives = 89/215 (41%), Gaps = 42/215 (19%)
Query: 150 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPR 209
+LD +S + P +LGP SGK+TLL LAG L G++T +G
Sbjct: 350 VLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPL---QGEVTLDGVPVSSLDQDE 406
Query: 210 TSAYVS--QQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIF 267
VS QD + + TVRE L A + + ++ L R G+
Sbjct: 407 VRRRVSVCAQDAHLFDTTVRENLRLA---RPDATDEELWAALER----VGLADW------ 453
Query: 268 MKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARV 327
+ L DT++G E +SGG+++RL L+ A +
Sbjct: 454 --------------------LRALPDGLDTVLG-EGGARLSGGERQRLALARALLADAPI 492
Query: 328 LFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVI 362
L +DE + LD+ T ++++ L AL G TV+
Sbjct: 493 LLLDEPTEHLDAETADELLEDL---LAALSGRTVV 524
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 61.5 bits (149), Expect = 9e-10
Identities = 57/258 (22%), Positives = 98/258 (37%), Gaps = 46/258 (17%)
Query: 135 LRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGK 194
+ LR+ G T+LDDLS I L L+G GKTTLL A+AG + ++G+
Sbjct: 8 IDHLRVAYGAN---TVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFV-KAAGLTGR 63
Query: 195 ITYNGHGFKEFVPP--RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARR 252
I PP R A + Q + V + + F + Q + ++A R
Sbjct: 64 IAIADRDLTH-APPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPK-----ADIAER 117
Query: 253 EKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQK 312
V +K++GL A L +SGG +
Sbjct: 118 -----------------------------VADALKLVGLGDAAAHLPAQ-----LSGGMQ 143
Query: 313 KRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAY 372
+R+ + VL +DE + LD++ + + + L T++ + +A
Sbjct: 144 QRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDAL 203
Query: 373 ELFDDVILLSEGQIVYQG 390
L D ++ +G++ G
Sbjct: 204 TLADKAGIMKDGRLAAHG 221
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 60.4 bits (146), Expect = 9e-10
Identities = 63/207 (30%), Positives = 94/207 (45%), Gaps = 33/207 (15%)
Query: 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLM-------DVLAG-RKTGGII-EG-DIYISG 892
Q + NV + G + AL+G SG GKTT + D+ G R TG I+ +G DIY
Sbjct: 18 QAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPR 77
Query: 893 YPKRQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVE 952
R G Q P ++V ++++ A L+L + + +ME+ E
Sbjct: 78 VDP--VAMRRRVGMVFQKPNPFPTMSVFDNVV--AGLKLAGIRDRD-------HLMEVAE 126
Query: 953 LTSLSGALI--------GLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAA 1004
SL GA + P GLS Q++RL IA L P I+ MDEPTS LD +
Sbjct: 127 -RSLRGAALWDEVKDRLKTPA-TGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPAST 184
Query: 1005 AIVMRTVRNIVNTGRTIVCT--IHQPS 1029
A + + ++ I+ T +HQ +
Sbjct: 185 ARIEDLMTDLKKVTTIIIVTHNMHQAA 211
|
Length = 252 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 59.9 bits (146), Expect = 1e-09
Identities = 53/255 (20%), Positives = 104/255 (40%), Gaps = 49/255 (19%)
Query: 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP 207
LT ++D+S +RP + L+GP +GKTTL + G SG + + G +P
Sbjct: 17 LTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFY---KPSSGTVIFRGRDI-TGLP 72
Query: 208 P--RTSAYVSQ--QDWQV-AEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDE 262
P +++ Q ++ +TV E + + S + E+ A +
Sbjct: 73 PHRIARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARER--- 129
Query: 263 DLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLV 322
+++ +GL AD G+ +S GQ++RL L
Sbjct: 130 -------------------ARELLEFVGLGELADRPAGN-----LSYGQQRRLEIARALA 165
Query: 323 GPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTV------ISLLQPAPEAYELFD 376
++L +DE + GL+ T ++ + ++ R G T+ + L+ L D
Sbjct: 166 TQPKLLLLDEPAAGLNPEETEELAELIR-ELRDRGGVTILLIEHDMKLV------MGLAD 218
Query: 377 DVILLSEGQIVYQGP 391
+++L+ G+++ +G
Sbjct: 219 RIVVLNYGEVIAEGT 233
|
Length = 250 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 60.1 bits (146), Expect = 1e-09
Identities = 62/257 (24%), Positives = 108/257 (42%), Gaps = 51/257 (19%)
Query: 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP- 207
+LD +S +RP + +LGP +GK+TLL AL+G L SG++T NG + P
Sbjct: 15 RLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPD---SGEVTLNGVPLNSWPPE 71
Query: 208 --PRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLD 265
R A + Q TV+E + ++ R +G +P+ED
Sbjct: 72 ELARHRAVLPQNSSLAFPFTVQE-----------------VVQMGRIPHRSGREPEEDER 114
Query: 266 IFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELL---- 321
I + L A + +SGG+++R+ +L
Sbjct: 115 I---------------AAQALAATDLSGLAGRDY-----RTLSGGEQQRVQLARVLAQLW 154
Query: 322 --VGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVI 379
V R LF+DE ++ LD + + ++ + R +G V+++L A + D ++
Sbjct: 155 PPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAR--EGGAVLAVLHDLNLAAQYADRIV 212
Query: 380 LLSEGQIVYQGPRVSVL 396
LL +G+++ G VL
Sbjct: 213 LLHQGRVIASGSPQDVL 229
|
Length = 259 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 62.7 bits (152), Expect = 1e-09
Identities = 73/235 (31%), Positives = 112/235 (47%), Gaps = 46/235 (19%)
Query: 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG---RKTGGIIEG--DIYISGYP 894
DRL N+T F +TA +G +GAGKTT + +L G +G ++ G DI +
Sbjct: 947 DRL----NIT--FYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDA 1000
Query: 895 KRQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPS--EIELETQRAFVEEV----M 948
RQ G C Q++I LTV E +LF A L+ S E +LE + A +E+
Sbjct: 1001 VRQSL-----GMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEME-AMLEDTGLHHK 1054
Query: 949 ELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVM 1008
E LSG + QRK L++A+ V + +V +DEPTSG+D +
Sbjct: 1055 RNEEAQDLSGGM------------QRK-LSVAIAFVGDAKVVVLDEPTSGVDPYS----R 1097
Query: 1009 RTVRNIV---NTGRTIV-CTIHQPSIDIFESFDELLFMKRGGELIYAGPLGSKSC 1059
R++ +++ +GRTI+ T H D+ D + + +G PL K+C
Sbjct: 1098 RSIWDLLLKYRSGRTIIMSTHHMDEADLLG--DRIAIISQGRLYCSGTPLFLKNC 1150
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 61.9 bits (151), Expect = 1e-09
Identities = 51/182 (28%), Positives = 76/182 (41%), Gaps = 33/182 (18%)
Query: 844 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARI 903
LL NV+ PG LVG +GAGK+TL+ +LAG G++ R+
Sbjct: 18 LLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEP--DSGEVTRPKG-------LRV 68
Query: 904 SGYCEQNDIHSPGLTVLESLL--FSAWLRLPSEIELETQRAFVEEVMELVELTSLSG--- 958
GY Q P TVL+ ++ F L +E+E + L EL +L
Sbjct: 69 -GYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELD 127
Query: 959 ----------ALIGLPGINGLSTE-------QRKRLTIAVELVANPSIVFMDEPTSGLDA 1001
AL+GL G R+R+ +A L+ P ++ +DEPT+ LD
Sbjct: 128 GWTLEARAEEALLGL-GFPDEDRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDL 186
Query: 1002 RA 1003
+
Sbjct: 187 ES 188
|
Length = 530 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 61.9 bits (151), Expect = 1e-09
Identities = 62/227 (27%), Positives = 92/227 (40%), Gaps = 57/227 (25%)
Query: 845 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGYPKRQ---ET 899
L ++ A + G ++G SG+GK+TL +L G T G + D G RQ E
Sbjct: 352 LKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLD----GADLRQWDREQ 407
Query: 900 FARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIEL------ETQRAFVEEV--MELV 951
R GY LP ++EL E F EE +++
Sbjct: 408 LGRHIGY------------------------LPQDVELFDGTIAENIARFGEEADPEKVI 443
Query: 952 ELTSLSGA-------------LIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSG 998
E L+G IG G LS QR+R+ +A L +P +V +DEP S
Sbjct: 444 EAARLAGVHELILRLPQGYDTRIG-EGGATLSGGQRQRIALARALYGDPFLVVLDEPNSN 502
Query: 999 LDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 1045
LD+ A + + G T+V H+PS S D++L ++ G
Sbjct: 503 LDSEGEAALAAAILAAKARGGTVVVIAHRPS--ALASVDKILVLQDG 547
|
Length = 580 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 59.3 bits (144), Expect = 1e-09
Identities = 62/213 (29%), Positives = 98/213 (46%), Gaps = 28/213 (13%)
Query: 851 AFRPGVLTALVGVSGAGKTTLMDVLAGRKT---GGIIEGDIYISGYPKRQETFARISGYC 907
G + A++G SGAGK+TL++++AG +T G I+ + + P + + + +
Sbjct: 21 TVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSML--FQ 78
Query: 908 EQNDIHSPGLTVLESLLF--SAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPG 965
E N LTV +++ S L+L +E QR VE V L+G L LPG
Sbjct: 79 ENNLF--AHLTVAQNIGLGLSPGLKLNAE-----QREKVEAAAAQV---GLAGFLKRLPG 128
Query: 966 INGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDA--RAAAIVMRTVRNIV--NTGRTI 1021
LS QR+R+ +A LV I+ +DEP S LD RA M + + + T+
Sbjct: 129 --ELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAE---MLALVSQLCDERKMTL 183
Query: 1022 VCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054
+ H P D D ++F+ G + G
Sbjct: 184 LMVTHHPE-DAARIADRVVFLDN-GRIAAQGST 214
|
Length = 231 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 61.8 bits (151), Expect = 1e-09
Identities = 58/215 (26%), Positives = 97/215 (45%), Gaps = 31/215 (14%)
Query: 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ET 899
L + G ALVG SGAGKT+L++ L G +G + I+G R+ E+
Sbjct: 364 TLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFLP---YQGSLKINGIELRELDPES 420
Query: 900 FARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGA 959
+ + + QN L LR + L A E++ + +E +S
Sbjct: 421 WRKHLSWVGQN-----------PQLPHGTLR--DNVLLGNPDASDEQLQQALENAWVSEF 467
Query: 960 LIGLP-GIN--------GLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRT 1010
L LP G++ GLS Q +RL +A L+ ++ +DEPT+ LDA + +VM+
Sbjct: 468 LPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQA 527
Query: 1011 VRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 1045
+ T++ T HQ ++ +D++ M+ G
Sbjct: 528 LNAASRRQTTLMVT-HQ--LEDLAQWDQIWVMQDG 559
|
Length = 588 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 58.2 bits (141), Expect = 2e-09
Identities = 53/224 (23%), Positives = 81/224 (36%), Gaps = 60/224 (26%)
Query: 150 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPR 209
+L L+ + LLG +GK+TLLL L G L SG + +G
Sbjct: 7 VLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQ---SGAVLIDG---------- 53
Query: 210 TSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMK 269
E LD Y L RR+++ + D D +F
Sbjct: 54 ------------------EPLD-----------YSRKGLLERRQRVGLVFQDPDDQLFAA 84
Query: 270 ------SFA---LGGQKTSL--VVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTG 318
+F LG + + V + +G + L SGG+KKR+
Sbjct: 85 DVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPT--HCL---SGGEKKRVAIA 139
Query: 319 ELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVI 362
+ VL +DE + GLD + Q++ L RA +G TV+
Sbjct: 140 GAVAMRPDVLLLDEPTAGLDPAGREQMLAIL-RRLRA-EGMTVV 181
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 58.4 bits (142), Expect = 2e-09
Identities = 69/244 (28%), Positives = 103/244 (42%), Gaps = 52/244 (21%)
Query: 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQV--SGKITYNGHGFKEFV 206
T LDDL+ I +LLGP GKTT L +AG L+ SG+I G + +
Sbjct: 14 TALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAG-----LEEPTSGRIYIGGRDVTD-L 67
Query: 207 PP--RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDL 264
PP R A V Q MTV + + F K+ + DE
Sbjct: 68 PPKDRDIAMVFQNYALYPHMTVYDNIAFG-------------------LKLRKVPKDE-- 106
Query: 265 DIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGP 324
I + V + ++L ++ D K +SGGQ++R+ G +V
Sbjct: 107 -IDER------------VREVAELLQIEHLLDRKP-----KQLSGGQRQRVALGRAIVRE 148
Query: 325 ARVLFMDE-ISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSE 383
+V MDE +SN LD+ Q+ LK + L GTT I + EA + D + ++++
Sbjct: 149 PKVFLMDEPLSN-LDAKLRVQMRAELKRLQQRL-GTTTIYVTHDQVEAMTMADRIAVMND 206
Query: 384 GQIV 387
GQI
Sbjct: 207 GQIQ 210
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 58.8 bits (143), Expect = 3e-09
Identities = 63/261 (24%), Positives = 106/261 (40%), Gaps = 48/261 (18%)
Query: 139 RIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYN 198
+ Y G L D++ I + ++GP +GK+TLL +L G + SG+I +N
Sbjct: 11 KTYPGGH---QALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVD---PTSGEILFN 64
Query: 199 GHGF-----KEFVPPRTS-AYVSQQDWQVAEMTVRET--LDFAGQCQGVGSKYDMITELA 250
G KE R + QQ V ++V E L G S + + +
Sbjct: 65 GVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFS--- 121
Query: 251 RREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGG 310
+ +K + E + I K++ Q+ A TL SGG
Sbjct: 122 KEDKAQALDALERVGILDKAY----QR-----------------ASTL---------SGG 151
Query: 311 QKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPE 370
Q++R+ LV +++ DE LD + +++ LK + T +++L Q
Sbjct: 152 QQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQ-VDL 210
Query: 371 AYELFDDVILLSEGQIVYQGP 391
A + D +I L G+IV+ GP
Sbjct: 211 AKKYADRIIGLKAGRIVFDGP 231
|
Length = 258 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 58.1 bits (141), Expect = 3e-09
Identities = 66/253 (26%), Positives = 106/253 (41%), Gaps = 54/253 (21%)
Query: 166 LLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPP--RTSAYVSQQDWQVAE 223
+LGP SGK+ LL +AG + SGKI NG PP R +YV Q
Sbjct: 30 ILGPTGSGKSVLLETIAGFIK---PDSGKILLNGKDITNL-PPEKRDISYVPQNYALFPH 85
Query: 224 MTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVE 283
MTV + + + G+ + E+ R+ V
Sbjct: 86 MTVYKNIAY-----GLKKRKVDKKEIERK-----------------------------VL 111
Query: 284 YIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTY 343
I ++LG+D + + + +SGG+++R+ LV ++L +DE + LD T
Sbjct: 112 EIAEMLGIDH-----LLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKE 166
Query: 344 QIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVLDFFASMG 403
++ + LK R G TV+ + EA+ L D V ++ G+++ G V
Sbjct: 167 KLREELK-KIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEV-------- 217
Query: 404 FSCPKRKNVADFL 416
F PK + VA+FL
Sbjct: 218 FKKPKNEFVAEFL 230
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 57.5 bits (140), Expect = 3e-09
Identities = 52/231 (22%), Positives = 87/231 (37%), Gaps = 47/231 (20%)
Query: 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFAR 902
++L V + G + AL+G +G+GK+TL + G + EG+I G
Sbjct: 14 EILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKG---------- 63
Query: 903 ISGYCEQNDIHSPGLTVLESL---LFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGA 959
DI L E +F A+ P EI F+ V E
Sbjct: 64 -------EDITD--LPPEERARLGIFLAFQY-PPEIPGVKNADFLRYVNE---------- 103
Query: 960 LIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGR 1019
G S ++KR I L+ P + +DEP SGLD A +V + + G+
Sbjct: 104 --------GFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGK 155
Query: 1020 TIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGSKSCELIKYFEVESF 1070
+++ H + + D + + G ++ +G EL E + +
Sbjct: 156 SVLIITHYQRLLDYIKPDRVHVLYD-GRIVKSGDK-----ELALEIEKKGY 200
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 60.9 bits (148), Expect = 3e-09
Identities = 72/259 (27%), Positives = 114/259 (44%), Gaps = 48/259 (18%)
Query: 150 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEF---V 206
IL D+S I+ + T ++G SGK+TL L +G SG+I NG K+
Sbjct: 489 ILSDISLTIKMNSKTTIVGMSGSGKSTLAKLL---VGFFQARSGEILLNGFSLKDIDRHT 545
Query: 207 PPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDI 266
+ Y+ Q+ + + ++ E L G + V D I IA IK D
Sbjct: 546 LRQFINYLPQEPYIFSG-SILENL-LLGAKENVSQ--DEIWAACE---IAEIKDD----- 593
Query: 267 FMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPAR 326
+++ LG Q T L E ISGGQK+R+ L+ ++
Sbjct: 594 -IENMPLGYQ-TELSEEG--------------------SSISGGQKQRIALARALLTDSK 631
Query: 327 VLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQI 386
VL +DE ++ LD+ T +I+ L + L T+I + A + D +I+L G+I
Sbjct: 632 VLILDESTSNLDTITEKKIVNNLLN----LQDKTIIFVAHRLSVA-KQSDKIIVLDHGKI 686
Query: 387 VYQGPRVSVLD---FFASM 402
+ QG +LD F+AS+
Sbjct: 687 IEQGSHDELLDRNGFYASL 705
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 58.1 bits (141), Expect = 4e-09
Identities = 72/254 (28%), Positives = 103/254 (40%), Gaps = 54/254 (21%)
Query: 151 LDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGF-KEFVPPR 209
LDD+S I L LLGP SGKTTLL +AG L SG I + G V R
Sbjct: 18 LDDVSLDIPSGELVALLGPSGSGKTTLLRLIAG-LER--PDSGTILFGGEDATDVPVQER 74
Query: 210 TSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMK 269
+V Q MTV + + F R K +P E +I K
Sbjct: 75 NVGFVFQHYALFRHMTVFDNVAF-----------------GLRVKPRSERPPEA-EIRAK 116
Query: 270 SFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLF 329
V ++K++ LD AD +SGGQ++R+ L +VL
Sbjct: 117 ------------VHELLKLVQLDWLADRYPAQ-----LSGGQRQRVALARALAVEPKVLL 159
Query: 330 MDEISNGLDSSTTYQIIKYLKHSTRAL-DGTTVISLL--QPAPEAYELFDDVILLSEGQI 386
+DE LD+ ++ K L+ R L D V ++ EA E+ D V+++++G+I
Sbjct: 160 LDEPFGALDA----KVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRI 215
Query: 387 --------VYQGPR 392
VY P
Sbjct: 216 EQVGTPDEVYDHPA 229
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.9 bits (146), Expect = 4e-09
Identities = 67/220 (30%), Positives = 99/220 (45%), Gaps = 42/220 (19%)
Query: 845 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKR-QETFARI 903
L +++ R G + AL+G +GAGK+TL+ +L+G G I I G R T A +
Sbjct: 20 LDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPD--AGSILIDGQEMRFASTTAAL 77
Query: 904 -SG----YCEQNDIH-SPGLTVLESLLFSAWL-RLPSEIELETQRAFVEEVMELVE---- 952
+G Y E +H P +TV E+L +L +LP + + +R E E +E
Sbjct: 78 AAGVAIIYQE---LHLVPEMTVAENL----YLGQLPHKGGIVNRRLLNYEAREQLEHLGV 130
Query: 953 -------LTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAA 1005
L LS IG QR+ + IA L N ++ DEPTS L AR
Sbjct: 131 DIDPDTPLKYLS---IG----------QRQMVEIAKALARNARVIAFDEPTSSLSAREIE 177
Query: 1006 IVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 1045
+ R +R + GR I+ H+ +IF D + K G
Sbjct: 178 QLFRVIRELRAEGRVILYVSHRME-EIFALCDAITVFKDG 216
|
Length = 501 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 60.0 bits (146), Expect = 5e-09
Identities = 48/192 (25%), Positives = 74/192 (38%), Gaps = 23/192 (11%)
Query: 166 LLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMT 225
L+G +GK+TLL LAG L SG++T Y+SQ+ E T
Sbjct: 34 LVGRNGAGKSTLLKILAGELEPD---SGEVTRP--------KGLRVGYLSQEPPLDPEKT 82
Query: 226 VRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFA-LGGQKTSLVVEY 284
V + + +G G +++ EL + DE L L G E
Sbjct: 83 VLDYV-----IEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEE 137
Query: 285 IMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQ 344
+ LG D V +SGG ++R+ L+ +L +DE +N LD +
Sbjct: 138 ALLGLGFPD-EDRPVSS-----LSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEW 191
Query: 345 IIKYLKHSTRAL 356
+ YLK +
Sbjct: 192 LEDYLKRYPGTV 203
|
Length = 530 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 59.5 bits (144), Expect = 5e-09
Identities = 64/230 (27%), Positives = 95/230 (41%), Gaps = 31/230 (13%)
Query: 827 DVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEG 886
D+ VE VL+ V + R G L LVG +GAGKTTL+ + G T G
Sbjct: 8 DLSVEFGDTTVLDG-------VDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPT--AG 58
Query: 887 DIYISGYPKRQETFARISGYCEQNDIHSPGLTVLESLLFSAWL-----RLPSEIEL---- 937
+ ++G + S + P T L S F R P
Sbjct: 59 TVLVAGDDVEALSARAAS----RRVASVPQDTSL-SFEFDVRQVVEMGRTPHRSRFDTWT 113
Query: 938 ETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTS 997
ET RA VE ME + + + LS +R+R+ +A L ++ +DEPT+
Sbjct: 114 ETDRAAVERAMERTGVAQFADR-----PVTSLSGGERQRVLLARALAQATPVLLLDEPTA 168
Query: 998 GLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESF-DELLFMKRGG 1046
LD + VR +V+ G+T V IH +D+ + DEL+ + G
Sbjct: 169 SLDINHQVRTLELVRRLVDDGKTAVAAIH--DLDLAARYCDELVLLADGR 216
|
Length = 402 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 57.5 bits (140), Expect = 5e-09
Identities = 54/222 (24%), Positives = 92/222 (41%), Gaps = 49/222 (22%)
Query: 845 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARIS 904
L N++ + +PG +VG +G+GK++L +LA + + G I I G
Sbjct: 20 LKNISFSIKPGEKVGIVGRTGSGKSSL--LLALFRLVELSSGSILIDGV----------- 66
Query: 905 GYCEQNDIHSPGLTVL---------ESLLFSAWLRL---PSEIELETQRAFVEEVMELVE 952
DI GL L + +LFS +R P + EE+ + +E
Sbjct: 67 ------DISKIGLHDLRSRISIIPQDPVLFSGTIRSNLDPFGEYSD------EELWQALE 114
Query: 953 LTSLSGALIGLPGI---------NGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARA 1003
L + LPG LS QR+ L +A L+ I+ +DE T+ +D
Sbjct: 115 RVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPET 174
Query: 1004 AAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 1045
A++ +T+R T++ H+ +D D +L + +G
Sbjct: 175 DALIQKTIRE-AFKDCTVLTIAHR--LDTIIDSDRILVLDKG 213
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 58.3 bits (141), Expect = 5e-09
Identities = 52/204 (25%), Positives = 95/204 (46%), Gaps = 27/204 (13%)
Query: 859 ALVGVSGAGKTTLMDVLAGRKTGGIIE---GDIYISGYPKRQETFARIS---GYCEQN-- 910
A++G +GAGK+TL R GI++ G + I G P +E + G QN
Sbjct: 34 AVIGPNGAGKSTLF-----RHFNGILKPTSGSVLIRGEPITKENIREVRKFVGLVFQNPD 88
Query: 911 -DIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGL 969
I SP TV + + F P + L+ + V + + L +P + L
Sbjct: 89 DQIFSP--TVEQDIAFG-----PINLGLDEE-TVAHRVSSALHMLGLEELRDRVP--HHL 138
Query: 970 STEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQP 1028
S ++KR+ IA + P ++ +DEPT+GLD + ++ + ++ T G T++ + HQ
Sbjct: 139 SGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQ- 197
Query: 1029 SIDIFESFDELLFMKRGGELIYAG 1052
+D+ + +++ G ++ G
Sbjct: 198 -LDLVPEMADYIYVMDKGRIVAYG 220
|
Length = 277 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 58.8 bits (143), Expect = 6e-09
Identities = 74/276 (26%), Positives = 112/276 (40%), Gaps = 61/276 (22%)
Query: 147 KLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQV-SGKITYNGHGFKEF 205
T +DD+S I+ LLGP GKTTLL +AG Q SG+I +G +
Sbjct: 17 DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAG----FEQPSSGEILLDGEDITD- 71
Query: 206 VPP--RTSAYVSQQDWQVA---EMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKP 260
VPP R V Q A MTV E + F L K+
Sbjct: 72 VPPEKRPIGMVFQ---SYALFPHMTVEENVAF---------------GL----KVRKKLK 109
Query: 261 DEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGEL 320
++ V E ++++GL+ AD +SGGQ++R+
Sbjct: 110 KAEIKAR-------------VEEA-LELVGLEGFADRKPHQ-----LSGGQQQRVALARA 150
Query: 321 LVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVIL 380
LV +VL +DE + LD+ Q+ K LK R L G T + + EA + D + +
Sbjct: 151 LVPEPKVLLLDEPLSALDAKLREQMRKELKELQREL-GITFVYVTHDQEEALAMSDRIAV 209
Query: 381 LSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFL 416
+++G+I G + + P + VADF+
Sbjct: 210 MNDGRIEQVGTPEEI--------YERPATRFVADFI 237
|
Length = 352 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 57.1 bits (139), Expect = 7e-09
Identities = 62/261 (23%), Positives = 107/261 (40%), Gaps = 64/261 (24%)
Query: 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGH---GFKE 204
L LDD+S +RP + L+GP +GKTTL ++G L SG + ++G G
Sbjct: 13 LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFL---RPTSGSVLFDGEDITGLPP 69
Query: 205 FVPPRTSAYVSQ--QDWQV-AEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPD 261
+ + Q ++ E+TV E + A Q + + ++ ARRE+
Sbjct: 70 HE--IARLGIGRTFQIPRLFPELTVLENVMVAAQAR---TGSGLLLARARREERE----- 119
Query: 262 EDLDIFMKSFALGGQKTSLVVEYIMKIL---GLDTCADTLVGDEMLKGISGGQKKRLTTG 318
E ++L GL AD G+ +S GQ++RL
Sbjct: 120 -------------------ARERAEELLERVGLADLADRPAGE-----LSYGQQRRLEIA 155
Query: 319 ELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRAL--DGTTVI------SLLQPAPE 370
L ++L +DE + GL+ T ++ + + R L G TV+ ++
Sbjct: 156 RALATDPKLLLLDEPAAGLNPEETEELAELI----RELRERGITVLLVEHDMDVV----- 206
Query: 371 AYELFDDVILLSEGQIVYQGP 391
L D V +L +G+++ +G
Sbjct: 207 -MSLADRVTVLDQGRVIAEGT 226
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 57.2 bits (139), Expect = 7e-09
Identities = 69/269 (25%), Positives = 103/269 (38%), Gaps = 66/269 (24%)
Query: 135 LRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGK 194
+ L +Y G +S IL +S + +T +LG GKTTLL L +G SG
Sbjct: 3 VSNLNVYYG-QS--HILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTL---MGLLPVKSGS 56
Query: 195 ITYNGHGFKEFVPPRTS----AYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELA 250
I +G + P + AYV Q +TV E L S+
Sbjct: 57 IRLDGEDITKLPPHERARAGIAYVPQGREIFPRLTVEENLLTGLAALPRRSR-------- 108
Query: 251 RREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEML--KG-- 306
KI PDE ++F +L EML +G
Sbjct: 109 ---KI----PDEIYELF-------------------PVL-----------KEMLGRRGGD 131
Query: 307 ISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQI---IKYLKHSTRALDGTTVIS 363
+SGGQ+++L LV ++L +DE + G+ S I I+ L RA G ++
Sbjct: 132 LSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRL----RAEGGMAILL 187
Query: 364 LLQPAPEAYELFDDVILLSEGQIVYQGPR 392
+ Q A EL D ++ G++V G
Sbjct: 188 VEQYLDFARELADRYYVMERGRVVASGAG 216
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 58.5 bits (142), Expect = 8e-09
Identities = 53/172 (30%), Positives = 84/172 (48%), Gaps = 27/172 (15%)
Query: 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGG-IIEGDIYISGYPKR 896
L +++ + + G L+G SG GKTTL+ ++AG R+T G I +G I+ P +
Sbjct: 15 GAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQ 74
Query: 897 QETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELV-ELTS 955
+ + G Q+ P LTV +++ + L+ + EV E V EL
Sbjct: 75 KRDY----GIVFQSYALFPNLTVADNIAYG----------LKNRGMGRAEVAERVAELL- 119
Query: 956 LSGALIGLPGING-----LSTEQRKRLTIAVELVANPSIVFMDEPTSGLDAR 1002
L+GLPG LS Q++R+ +A L +P ++ +DEP S LDAR
Sbjct: 120 ---DLVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDAR 168
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 56.8 bits (137), Expect = 9e-09
Identities = 50/185 (27%), Positives = 79/185 (42%), Gaps = 30/185 (16%)
Query: 854 PGVLTALVGVSGAGKTTLMDVLAGRKTGGII---EGDIYISGYPKRQETFARISGYCEQN 910
G L L+G +GAGKTTL+ R G+I +G + ++G + R GY Q
Sbjct: 5 KGELLGLLGPNGAGKTTLL-----RAILGLIPPAKGTVKVAGASPGKGW--RHIGYVPQR 57
Query: 911 ---------DIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALI 961
+ ++ + WLR P + A V + + V LT L+ +
Sbjct: 58 HEFAWDFPISVAHTVMSGRTGHI--GWLRRPCVADF----AAVRDALRRVGLTELADRPV 111
Query: 962 GLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTI 1021
G LS QR+R+ +A L PS++ +DEP +GLD ++ + G I
Sbjct: 112 G-----ELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAI 166
Query: 1022 VCTIH 1026
+ T H
Sbjct: 167 LMTTH 171
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Score = 57.3 bits (139), Expect = 9e-09
Identities = 56/194 (28%), Positives = 79/194 (40%), Gaps = 26/194 (13%)
Query: 845 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFA 901
L ++ R G + LVG +GAGK+TL+ +AG G G I +G P A
Sbjct: 12 LGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG---SGSIQFAGQPLEAWSAAELA 68
Query: 902 RISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALI 961
R Y Q + V + L L P + E + + EV E + L
Sbjct: 69 RHRAYLSQQQTPPFAMPVFQYLT----LHQPDKTRTEAVASALNEVAEALGLDDK----- 119
Query: 962 GLP-GINGLS-TE-QRKRLTIAVELVANPSI------VFMDEPTSGLDARAAAIVMRTVR 1012
L +N LS E QR RL AV L P I + +DEP + LD A + R +
Sbjct: 120 -LGRSVNQLSGGEWQRVRLA-AVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLS 177
Query: 1013 NIVNTGRTIVCTIH 1026
+ G +V + H
Sbjct: 178 ELCQQGIAVVMSSH 191
|
Length = 248 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 57.1 bits (139), Expect = 9e-09
Identities = 58/212 (27%), Positives = 98/212 (46%), Gaps = 22/212 (10%)
Query: 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGYPKRQET 899
++L ++ + G + ++G SG+GK+TL+ L G G I D G K
Sbjct: 15 KEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILK 74
Query: 900 FARISGYCEQNDIHSPGLTVLESLLFS-AWLRLPSEIELETQRAFVEEVMELVELTSLSG 958
R G Q P LTVLE++ + ++ S+ E ++A E++E V L +
Sbjct: 75 LRRKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAR-EKA--LELLEKVGLADKAD 131
Query: 959 ALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTG 1018
A P LS Q++R+ IA L +P ++ DEPTS LD V+ ++++ G
Sbjct: 132 AY---PA--QLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEG 186
Query: 1019 RTIVCTIHQPSIDIFESF-----DELLFMKRG 1045
T++ H ++ F D ++FM +G
Sbjct: 187 MTMIIVTH----EM--GFAREVADRVIFMDQG 212
|
Length = 240 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 56.8 bits (138), Expect = 1e-08
Identities = 63/252 (25%), Positives = 104/252 (41%), Gaps = 47/252 (18%)
Query: 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPP 208
L D+S I P L+GP +GK+TLL L G + SG + +G +
Sbjct: 15 KALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVE---PTSGSVLIDGTDINKLKGK 71
Query: 209 ------RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREK---IAGIK 259
R + QQ + ++V E + + L RR + G+
Sbjct: 72 ALRQLRRQIGMIFQQFNLIERLSVLENV--------------LSGRLGRRSTWRSLFGLF 117
Query: 260 PDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGE 319
P E+ K AL ++ +GL A D++ SGGQ++R+
Sbjct: 118 PKEE-----KQRAL----------AALERVGLLDKAYQRA-DQL----SGGQQQRVAIAR 157
Query: 320 LLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVI 379
L+ +++ DE LD +++ Q++ LK R T ++SL Q A E D ++
Sbjct: 158 ALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQV-DLAREYADRIV 216
Query: 380 LLSEGQIVYQGP 391
L +G+IV+ GP
Sbjct: 217 GLKDGRIVFDGP 228
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 56.0 bits (136), Expect = 1e-08
Identities = 58/262 (22%), Positives = 103/262 (39%), Gaps = 56/262 (21%)
Query: 135 LRQLR-IYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQV-- 191
L+ L Y G K+ L +S I ++GP SGK+TLL L G L
Sbjct: 3 LKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGG-----LDRPT 57
Query: 192 SGKITYNGHGFKEFVPPRTSA-------YVSQQDWQVAEMTVRETLDFAGQCQGVGSKYD 244
SG++ +G + +A +V Q + ++T E ++
Sbjct: 58 SGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLL--------- 108
Query: 245 MITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEML 304
+AG+ E + E +++ +GL + E+
Sbjct: 109 ----------LAGVPKKERRE---------------RAEELLERVGLGDRLNHYPS-EL- 141
Query: 305 KGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISL 364
SGGQ++R+ L +++ DE + LDS T ++++ L+ GTT++ +
Sbjct: 142 ---SGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLR-ELNKEAGTTIV-V 196
Query: 365 LQPAPEAYELFDDVILLSEGQI 386
+ PE E D +I L +G+I
Sbjct: 197 VTHDPELAEYADRIIELRDGKI 218
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 57.4 bits (139), Expect = 1e-08
Identities = 59/280 (21%), Positives = 106/280 (37%), Gaps = 42/280 (15%)
Query: 125 NFIFNMTEALLRQLR--IYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALA 182
N+ + E L+ + + + D+S I + LG +GK+T L L
Sbjct: 12 NYPVAIKEPGLKGSLNHFFHRKERSIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLT 71
Query: 183 GRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSK 242
G L SGK+ NG P R +R GQ
Sbjct: 72 GL---LLPTSGKVRVNG-----KDPFRRREEY-----------LRSIGLVMGQKLQ---- 108
Query: 243 YDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDE 302
+ +L + L++ + + + + ++++ +IL L+ +
Sbjct: 109 --LWWDLPALD---------SLEVLKLIYEIPDDEFAERLDFLTEILDLEG----FLKWP 153
Query: 303 MLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVI 362
+ K +S GQ+ R L+ P +VLF+DE + GLD + I ++LK TV+
Sbjct: 154 VRK-LSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEE-RQATVL 211
Query: 363 SLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVLDFFASM 402
+ L D V+L+ +GQ+V+ G + + F
Sbjct: 212 LTTHIFDDIATLCDRVLLIDQGQLVFDGTLAQLQEQFGPY 251
|
Length = 325 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 56.8 bits (138), Expect = 1e-08
Identities = 62/233 (26%), Positives = 98/233 (42%), Gaps = 29/233 (12%)
Query: 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG---RKTGGIIEGDIYISGYPKRQET 899
+L V+ G +T ++G +G GKTTL+ L G K+G I I+ P
Sbjct: 14 HILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLP----P 69
Query: 900 FARIS---GYCEQNDIHSPGLTVLESLL--FSAWLRLPSEIELETQRAFVEEVMELVE-L 953
R Y Q P LTV E+LL +A R +I +E+ EL L
Sbjct: 70 HERARAGIAYVPQGREIFPRLTVEENLLTGLAALPRRSRKI--------PDEIYELFPVL 121
Query: 954 TSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRN 1013
+ G G LS Q+++L IA LV P ++ +DEPT G+ + R +R
Sbjct: 122 KEMLGRRGGD-----LSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRR 176
Query: 1014 IVNTGRTIVCTIHQPSIDI-FESFDELLFMKRGGELIYAGPLGSKSCELIKYF 1065
+ G + + Q +D E D M+R G ++ +G + ++ +
Sbjct: 177 LRAEGGMAILLVEQ-YLDFARELADRYYVMER-GRVVASGAGDELDEDKVRRY 227
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 58.1 bits (141), Expect = 1e-08
Identities = 56/152 (36%), Positives = 78/152 (51%), Gaps = 16/152 (10%)
Query: 861 VGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFARISGYCEQNDIHSPGL 917
VG SG GK+TL+ ++AG + I GD++I KR R G Q+ P L
Sbjct: 35 VGPSGCGKSTLLRMIAGLED--ITSGDLFIGE--KRMNDVPPAERGVGMVFQSYALYPHL 90
Query: 918 TVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRL 977
+V E++ F L + E+ QR V +V E+++L L L P LS QR+R+
Sbjct: 91 SVAENMSFGLKLAGAKKEEIN-QR--VNQVAEVLQLAHL---LDRKP--KALSGGQRQRV 142
Query: 978 TIAVELVANPSIVFMDEPTSGLDARAAAIVMR 1009
I LVA PS+ +DEP S LDA A + MR
Sbjct: 143 AIGRTLVAEPSVFLLDEPLSNLDA-ALRVQMR 173
|
Length = 369 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 57.6 bits (139), Expect = 1e-08
Identities = 58/220 (26%), Positives = 100/220 (45%), Gaps = 15/220 (6%)
Query: 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLM---DVLAGRKTGGIIEGDIYISGYPKRQ 897
+Q L NV+ G + ++G SGAGK+TL+ ++L +G +I ++ +
Sbjct: 17 TIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSE 76
Query: 898 ETFARIS-GYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSL 956
T AR G Q+ +L S + LP E++ + +V EL+ L L
Sbjct: 77 LTKARRQIGMIFQH------FNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGL 130
Query: 957 SGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVN 1016
P + LS Q++R+ IA L +NP ++ DE TS LD ++ ++ I
Sbjct: 131 GDKHDSYP--SNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINR 188
Query: 1017 T-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055
G TI+ H+ +D+ + + + + GELI G +
Sbjct: 189 RLGLTILLITHE--MDVVKRICDCVAVISNGELIEQGTVS 226
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 58.3 bits (141), Expect = 1e-08
Identities = 62/220 (28%), Positives = 91/220 (41%), Gaps = 32/220 (14%)
Query: 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIE---GDIYISG--YPKR 896
+ L +V PG + AL+G +GAGK+TLM VL+ GI E G I I+ Y K
Sbjct: 18 VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLS-----GIHEPTKGTITINNINYNKL 72
Query: 897 QETFARISG----YCEQNDIHSPGLTVLESLLFSAWLRLPSE-------IELETQRAFVE 945
A G Y E + I LTVLE+L R ++ I+ R
Sbjct: 73 DHKLAAQLGIGIIYQELSVIDE--LTVLENLYIG---RHLTKKVCGVNIIDWREMRVRAA 127
Query: 946 EVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAA 1005
++ V L + LS ++ L IA L+ + ++ MDEPTS L +
Sbjct: 128 MMLLRVGLKVDLDEKVA-----NLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVD 182
Query: 1006 IVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 1045
+ + + G IV H+ + +I D MK G
Sbjct: 183 YLFLIMNQLRKEGTAIVYISHKLA-EIRRICDRYTVMKDG 221
|
Length = 510 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 56.0 bits (135), Expect = 1e-08
Identities = 59/202 (29%), Positives = 101/202 (50%), Gaps = 23/202 (11%)
Query: 851 AFRPGVLTALVGVSGAGKTTLMDVLAGRKT---GGI-IEGDIYISGYPKRQETFARISGY 906
F G +TA+VG SG+GK+TL++++AG +T G + I G + P + +S
Sbjct: 20 TFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRP----VSML 75
Query: 907 CEQNDIHSPGLTVLES--LLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLP 964
++N++ LTV ++ L S L+L +E R +E + V L+G LP
Sbjct: 76 FQENNLF-AHLTVEQNVGLGLSPGLKLTAE-----DRQAIEVALARV---GLAGLEKRLP 126
Query: 965 GINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNI-VNTGRTIVC 1023
G LS +R+R+ +A LV + ++ +DEP + LD A ++ V ++ T T++
Sbjct: 127 G--ELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLM 184
Query: 1024 TIHQPSIDIFESFDELLFMKRG 1045
HQP D ++F+ G
Sbjct: 185 VTHQPE-DAKRLAQRVVFLDNG 205
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 56.3 bits (136), Expect = 1e-08
Identities = 61/203 (30%), Positives = 91/203 (44%), Gaps = 27/203 (13%)
Query: 845 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRK---TGGII-EGDIYISGYPKRQETF 900
L V + G +L+G SG GK+TL+++++G +GG+I EG P R F
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVF 60
Query: 901 ARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGAL 960
QN P LTV E++ + LP + E +RA VEE + LV LT +
Sbjct: 61 --------QNYSLLPWLTVRENIALAVDRVLPDLSKSE-RRAIVEEHIALVGLTEAADKR 111
Query: 961 IGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGR- 1019
G LS ++R+ IA L P ++ +DEP LDA + + I R
Sbjct: 112 PG-----QLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRV 166
Query: 1020 TIVCTIHQPSIDIFESFDELLFM 1042
T++ H D+ DE L +
Sbjct: 167 TVLMVTH----DV----DEALLL 181
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 56.2 bits (136), Expect = 2e-08
Identities = 59/252 (23%), Positives = 94/252 (37%), Gaps = 47/252 (18%)
Query: 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGH-----GFK 203
L +++ I P ++GP +GK+TLL + RL SG I G K
Sbjct: 16 QALKNINLNINPGEFVAIIGPSGAGKSTLLRCI-NRL--VEPSSGSILLEGTDITKLRGK 72
Query: 204 EFVPPRTS-AYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIK--- 259
+ R + Q + +TV E + + L + +
Sbjct: 73 KLRKLRRRIGMIFQHYNLIERLTVLENV--------------LHGRLGYKPTWRSLLGRF 118
Query: 260 PDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGE 319
+ED K AL ++ +GL A +SGGQ++R+
Sbjct: 119 SEED-----KERAL----------SALERVGLADKAYQRA-----DQLSGGQQQRVAIAR 158
Query: 320 LLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVI 379
L ++ DE LD T+ Q++ YLK + DG TVI L A + D ++
Sbjct: 159 ALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKE-DGITVIINLHQVDLAKKYADRIV 217
Query: 380 LLSEGQIVYQGP 391
L G+IV+ G
Sbjct: 218 GLKAGEIVFDGA 229
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 57.7 bits (140), Expect = 2e-08
Identities = 59/234 (25%), Positives = 92/234 (39%), Gaps = 45/234 (19%)
Query: 151 LDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPP-- 208
L +S + P L+GP +GK+TLL L G + G I NG +
Sbjct: 338 LRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPT---EGSIAVNGVPLADADADSW 394
Query: 209 -RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIF 267
A+V Q + A T+ E + A + S I E R AG LD F
Sbjct: 395 RDQIAWVPQHPFLFAG-TIAENIRLA---RPDASD-AEIREALER---AG------LDEF 440
Query: 268 MKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARV 327
+ + G DT +G+ G+SGGQ +RL + A +
Sbjct: 441 VAALPQG--------------------LDTPIGEGG-AGLSGGQAQRLALARAFLRDAPL 479
Query: 328 LFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILL 381
L +DE + LD+ T ++++ L+ G TV+ L+ L D +++L
Sbjct: 480 LLLDEPTAHLDAETEAEVLEALR---ALAQGRTVL-LVTHRLALAALADRIVVL 529
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 55.3 bits (134), Expect = 2e-08
Identities = 57/246 (23%), Positives = 104/246 (42%), Gaps = 55/246 (22%)
Query: 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPP 208
+LDD+S ++ + LGP +GKTT + + G + SG+IT++G +++ +
Sbjct: 14 RVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIK---PDSGEITFDGKSYQKNIEA 70
Query: 209 --RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDI 266
R A + + +T RE L L R+K
Sbjct: 71 LRRIGALIEAPGF-YPNLTARENLRLLA------------RLLGIRKKR----------- 106
Query: 267 FMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPAR 326
++ ++ ++GL A V KG S G K+RL L+G
Sbjct: 107 ---------------IDEVLDVVGLKDSAKKKV-----KGFSLGMKQRLGIALALLGNPD 146
Query: 327 VLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVIS--LLQPAPEAYELFDDVILLSEG 384
+L +DE +NGLD ++ + + S R T +IS LL E ++ D + ++++G
Sbjct: 147 LLILDEPTNGLDPDGIKELRELI-LSLRDQGITVLISSHLLS---EIQKVADRIGIINKG 202
Query: 385 QIVYQG 390
+++ +G
Sbjct: 203 KLIEEG 208
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 56.6 bits (137), Expect = 2e-08
Identities = 60/244 (24%), Positives = 95/244 (38%), Gaps = 50/244 (20%)
Query: 151 LDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGF-KEFVPPR 209
+D ++ +R + LGP +GKTT + L L SG G+ +E R
Sbjct: 9 VDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLR---PTSGTARVAGYDVVREPRKVR 65
Query: 210 TSAYVSQQDWQVAE-MTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFM 268
S + Q V E +T RE L+ G+ G+ E+ + +
Sbjct: 66 RSIGIVPQYASVDEDLTGRENLEMMGRLYGLPKD-------EAEERAEEL---------L 109
Query: 269 KSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVL 328
+ F LG D + SGG ++RL L+ VL
Sbjct: 110 ELFELGEA-----------------------ADRPVGTYSGGMRRRLDIAASLIHQPDVL 146
Query: 329 FMDEISNGLDSSTTYQIIKYLKHSTRAL--DGTTVISLLQPAPEAYELFDDVILLSEGQI 386
F+DE + GLD T I Y+ RAL +G T++ EA +L D + ++ G+I
Sbjct: 147 FLDEPTTGLDPRTRRAIWDYI----RALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRI 202
Query: 387 VYQG 390
+ +G
Sbjct: 203 IAEG 206
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 55.7 bits (135), Expect = 2e-08
Identities = 54/244 (22%), Positives = 98/244 (40%), Gaps = 49/244 (20%)
Query: 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPP 208
T LDD+S + + LLGP +GKTT + + G + L SG++ ++G +
Sbjct: 14 TALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGII---LPDSGEVLFDGKPL-DIAAR 69
Query: 209 RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFM 268
Y+ ++ +M V + L + Q +G+ + ARR +D ++
Sbjct: 70 NRIGYLPEERGLYPKMKVIDQLVYLAQLKGLKKEE------ARRR----------IDEWL 113
Query: 269 KSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVL 328
+ L ++ ++ +S G ++++ ++ +L
Sbjct: 114 ERLELSEYA-----------------------NKRVEELSKGNQQKVQFIAAVIHDPELL 150
Query: 329 FMDEISNGLDSSTTYQIIKYLKHSTRAL--DGTTVISLLQPAPEAYELFDDVILLSEGQI 386
+DE +GLD + LK R L G TVI EL D V+LL++G+
Sbjct: 151 ILDEPFSGLDPVNV----ELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRA 206
Query: 387 VYQG 390
V G
Sbjct: 207 VLYG 210
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 57.0 bits (138), Expect = 2e-08
Identities = 56/233 (24%), Positives = 91/233 (39%), Gaps = 48/233 (20%)
Query: 164 TLLLGPPSSGKTTLLLALAGRL---GHHLQVSGKITYNGHGFKEFVPP--RTSAYVSQQD 218
T + G SGKTTL+ +AG + ++G+ T F+PP R YV Q+
Sbjct: 26 TAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGR-TLFDSRKGIFLPPEKRRIGYVFQEA 84
Query: 219 WQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKT 278
++VR L + G K +E
Sbjct: 85 RLFPHLSVRGNLRY-------GMKRARPSERRISF------------------------- 112
Query: 279 SLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLD 338
E ++++LG+ L G +SGG+K+R+ G L+ R+L MDE LD
Sbjct: 113 ----ERVIELLGIGHLLGRLPGR-----LSGGEKQRVAIGRALLSSPRLLLMDEPLAALD 163
Query: 339 SSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQGP 391
Y+I+ YL+ ++ + E L D V++L +G++ GP
Sbjct: 164 DPRKYEILPYLERLHAEFG-IPILYVSHSLQEVLRLADRVVVLEDGRVAAAGP 215
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.5 bits (136), Expect = 2e-08
Identities = 67/236 (28%), Positives = 103/236 (43%), Gaps = 23/236 (9%)
Query: 830 VELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLM-------DVLAGRKTGG 882
+E++ + + NVT +TA++G SG GKTTL+ D + G +
Sbjct: 4 IEIENFSAYYGEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFR--- 60
Query: 883 IIEGDIYISGY----PKRQETFARIS-GYCEQNDIHSPGLTVLESLLFSAWLRLPSEIEL 937
+EG IY G P+ T R G Q P +++ +++ F R+
Sbjct: 61 -VEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPTPFP-MSIYDNVAFG--PRIHGVKSK 116
Query: 938 ETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTS 997
VEE ++ L + + PG LS Q++RL IA L P ++ +DEPTS
Sbjct: 117 HKLDRIVEESLKKAALWDEVKSELNKPGTR-LSGGQQQRLCIARALAVEPEVILLDEPTS 175
Query: 998 GLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGP 1053
LD A + + + + + TIV H I + D + FM R GELI GP
Sbjct: 176 ALDPIATQRIEKLLEEL-SENYTIVIVTHNIGQAIRIA-DYIAFMYR-GELIEYGP 228
|
Length = 250 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 57.1 bits (138), Expect = 2e-08
Identities = 56/205 (27%), Positives = 88/205 (42%), Gaps = 24/205 (11%)
Query: 860 LVGVSGAGKTTLMDVLAGRKT---GGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPG 916
L+G SG GKTTL+ +LAG + G I+ ++ P R Q+ P
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHL----RHINMVFQSYALFPH 56
Query: 917 LTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKR 976
+TV E++ F +R ++ + V E + LV+L + LS Q++R
Sbjct: 57 MTVEENVAFGLKMR---KVPRAEIKPRVLEALRLVQLEEF-----ADRKPHQLSGGQQQR 108
Query: 977 LTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFES 1035
+ +A LV P I+ +DEP S LD + + ++ I G T V H + S
Sbjct: 109 VALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQEEAMTMS 168
Query: 1036 FDELLFMKRG-------GELIYAGP 1053
D + M++G E IY P
Sbjct: 169 -DRIAIMRKGKIAQIGTPEEIYEEP 192
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 56.1 bits (136), Expect = 2e-08
Identities = 51/186 (27%), Positives = 92/186 (49%), Gaps = 16/186 (8%)
Query: 847 NVTGAFRPGVLTALVGVSGAGKTTLMDVLAG---RKTGGIIEGDIYISGYP--KRQETFA 901
+V+ G + L+G +GAGKTT ++ G +G I+ D I+ P KR A
Sbjct: 22 DVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKR----A 77
Query: 902 RIS-GYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGAL 960
R+ GY Q LTV ++++ +R + E ++ ++ ++E +T L +
Sbjct: 78 RLGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAE-RKEELDALLEEFHITHLRDS- 135
Query: 961 IGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRT 1020
+ LS +R+R+ IA L ANP + +DEP +G+D A + R ++++ + G
Sbjct: 136 ---KAYS-LSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIG 191
Query: 1021 IVCTIH 1026
++ T H
Sbjct: 192 VLITDH 197
|
Length = 243 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 2e-08
Identities = 54/192 (28%), Positives = 85/192 (44%), Gaps = 25/192 (13%)
Query: 831 ELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGII--EG 886
ELKQ G L ++L N++ + R G A+ G SG GK+TL+ ++A T G + EG
Sbjct: 5 ELKQVGYLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEG 64
Query: 887 DIYISGYPK--RQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFV 944
+ + P+ RQ+ YC Q TV ++L+F +R RA
Sbjct: 65 EDVSTLKPEAYRQQV-----SYCAQTPALFGD-TVEDNLIFPWQIR-----NRRPDRAAA 113
Query: 945 EEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAA 1004
+++ L I I LS +++R+ + L P I+ +DE TS LD
Sbjct: 114 LDLLARFAL----PDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNK 169
Query: 1005 ----AIVMRTVR 1012
++ R VR
Sbjct: 170 RNIEEMIHRYVR 181
|
Length = 223 |
| >gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.4 bits (136), Expect = 2e-08
Identities = 62/249 (24%), Positives = 108/249 (43%), Gaps = 30/249 (12%)
Query: 815 LSMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDV 874
+S+ F N++Y ++++G L N++ G ALVG +G+GK+TLM
Sbjct: 1 MSIKFENVDYIYSPGTPMEKKG--------LDNISFELEEGSFVALVGHTGSGKSTLMQH 52
Query: 875 LAG--RKTGGIIEGDIYISGYPKRQETFA--------RISGYCEQNDIHSPGLTVLESLL 924
+ + G I I+GY ET ++S + + TVL+ +
Sbjct: 53 FNALLKPSSGTIT----IAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVE 108
Query: 925 FSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELV 984
F P A E+ ++ ++ LS LI LS Q +R+ IA +
Sbjct: 109 FG-----PKNFGFSEDEA-KEKALKWLKKVGLSEDLISKSPFE-LSGGQMRRVAIAGVMA 161
Query: 985 ANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKR 1044
P I+ +DEP +GLD +M+ ++ G T++ H D+ E D++L ++
Sbjct: 162 YEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMD-DVAEYADDVLVLEH 220
Query: 1045 GGELIYAGP 1053
G + +A P
Sbjct: 221 GKLIKHASP 229
|
Length = 287 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 53.4 bits (129), Expect = 3e-08
Identities = 28/85 (32%), Positives = 40/85 (47%), Gaps = 9/85 (10%)
Query: 135 LRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGK 194
+ L G R T LD++S ++ + L+GP SGK+TLL A+AG L SG+
Sbjct: 2 IENLSFRYGGR---TALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPT---SGE 55
Query: 195 ITYNGHGFKEFVPP---RTSAYVSQ 216
I +G + R YV Q
Sbjct: 56 ILIDGKDIAKLPLEELRRRIGYVPQ 80
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 55.6 bits (135), Expect = 3e-08
Identities = 50/195 (25%), Positives = 79/195 (40%), Gaps = 71/195 (36%)
Query: 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLM-------DVLAGRKTGGIIEGDIYISGYPK 895
L ++ +TAL+G SG GK+TL+ D++ G + +EG++ + G
Sbjct: 21 HALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGAR----VEGEVLLDG--- 73
Query: 896 RQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQR------------AF 943
+I+ P + V+E LR + + Q+ A+
Sbjct: 74 --------------KNIYDPKVDVVE-------LR--RRVGMVFQKPNPFPMSIYDNVAY 110
Query: 944 V--------EEVMELVELTSLSGALIGL----------PGINGLSTEQRKRLTIAVELVA 985
+E+ E+VE +SL A L GLS Q++RL IA L
Sbjct: 111 GLRLHGIKDKELDEIVE-SSLKKA--ALWDEVKDRLHKSA-LGLSGGQQQRLCIARALAV 166
Query: 986 NPSIVFMDEPTSGLD 1000
P ++ MDEPTS LD
Sbjct: 167 KPEVLLMDEPTSALD 181
|
Length = 253 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 55.5 bits (134), Expect = 3e-08
Identities = 49/157 (31%), Positives = 75/157 (47%), Gaps = 12/157 (7%)
Query: 845 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARIS 904
L ++ G L ++G SG GKTTL++++AG G I + G P R
Sbjct: 17 LEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQ--HGSITLDGKPVEGPGAER-- 72
Query: 905 GYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLP 964
G QN+ P V +++ F L+L + +E + ++++ V L GA
Sbjct: 73 GVVFQNEGLLPWRNVQDNVAFG--LQL-AGVEKMQRLEIAHQMLKKVGL---EGA--EKR 124
Query: 965 GINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDA 1001
I LS QR+R+ IA L ANP ++ +DEP LDA
Sbjct: 125 YIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDA 161
|
Length = 255 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 57.4 bits (139), Expect = 3e-08
Identities = 58/217 (26%), Positives = 97/217 (44%), Gaps = 34/217 (15%)
Query: 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGYPKRQET 899
+ +L +T PG + ALVG SG+GK+T+ +L + TGG + + G P Q
Sbjct: 494 VPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGG----QVLLDGVPLVQ-- 547
Query: 900 FARISGYCEQNDIHSP-GLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSG 958
+ + +H L E +LFS +R I EE+M + +
Sbjct: 548 -------YDHHYLHRQVALVGQEPVLFSGSVR--ENIAYGLTDTPDEEIMAAAKAANAHD 598
Query: 959 ALIGLP-GING--------LSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMR 1009
++ P G + LS Q++R+ IA LV P ++ +DE TS LDA +
Sbjct: 599 FIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAE----CEQ 654
Query: 1010 TVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRG 1045
++ + RT++ H+ S E D++L +K+G
Sbjct: 655 LLQESRSRASRTVLLIAHRLS--TVERADQILVLKKG 689
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 55.8 bits (135), Expect = 4e-08
Identities = 62/254 (24%), Positives = 99/254 (38%), Gaps = 60/254 (23%)
Query: 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPP 208
+DD++ I +L+GP SGKTT L + RL SG+I +G + + P
Sbjct: 15 KAVDDVNLTIEEGEFLVLIGPSGSGKTT-TLKMINRLIEP--TSGEILIDGEDISD-LDP 70
Query: 209 ----RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDL 264
R YV QQ +TV E + + G +E+I
Sbjct: 71 VELRRKIGYVIQQIGLFPHLTVAENIATVPKLLGWD-----------KERIKKR------ 113
Query: 265 DIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGP 324
+ ++ ++GLD + D +SGGQ++R VG
Sbjct: 114 -----------------ADELLDLVGLDP---SEYADRYPHELSGGQQQR-------VGV 146
Query: 325 AR-------VLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDD 377
AR +L MDE LD T Q+ + +K + L G T++ + EA +L D
Sbjct: 147 ARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKEL-GKTIVFVTHDIDEALKLADR 205
Query: 378 VILLSEGQIVYQGP 391
+ ++ G+IV
Sbjct: 206 IAVMDAGEIVQYDT 219
|
Length = 309 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 56.9 bits (138), Expect = 4e-08
Identities = 44/162 (27%), Positives = 73/162 (45%), Gaps = 22/162 (13%)
Query: 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE 898
+ LL +++ G A+VG +GAGK+TL+ +LAG + G + G +
Sbjct: 332 DGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGP--LSGTV-KVGETVKIG 388
Query: 899 TFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSG 958
F ++++ P TVLE L P E E RA++ +G
Sbjct: 389 YFD-----QHRDEL-DPDKTVLEEL----SEGFPDGDEQEV-RAYLGRFG-------FTG 430
Query: 959 ALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLD 1000
P + LS ++ RL +A L+ P+++ +DEPT+ LD
Sbjct: 431 EDQEKP-VGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLD 471
|
Length = 530 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 54.9 bits (133), Expect = 4e-08
Identities = 60/195 (30%), Positives = 87/195 (44%), Gaps = 27/195 (13%)
Query: 845 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGY------PKR 896
L +V+ + G + ++G SGAGK+TL+ + G R T G + + G K
Sbjct: 21 LKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPT----SGSVLVDGTDLTLLSGKE 76
Query: 897 QETFARISGYCEQ--NDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELT 954
R G Q N + S TV E++ LP EI + E V+EL+EL
Sbjct: 77 LRKARRRIGMIFQHFNLLSSR--TVFENVA------LPLEIAGVPKAEIEERVLELLELV 128
Query: 955 SLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNI 1014
L P LS Q++R+ IA L NP ++ DE TS LD ++ +R+I
Sbjct: 129 GLEDKADAYPA--QLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDI 186
Query: 1015 VN--TGRTIVCTIHQ 1027
N G TIV H+
Sbjct: 187 -NRELGLTIVLITHE 200
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 56.8 bits (137), Expect = 4e-08
Identities = 46/186 (24%), Positives = 82/186 (44%), Gaps = 15/186 (8%)
Query: 845 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKR----QETF 900
L + RPG L G +GAGK+TLM +L+G G +G+IY SG P + ++T
Sbjct: 17 LDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTE 76
Query: 901 ARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEI---ELETQRAFVEEVMELVELTSLS 957
Q P L+V E++ + LP RA + ++ ++L + +
Sbjct: 77 RAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRA--KNLLRELQLDADN 134
Query: 958 GALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNT 1017
+ Q++ + IA L ++ +DEP+S L + I++ +R++
Sbjct: 135 VTR----PVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAH 190
Query: 1018 GRTIVC 1023
G + C
Sbjct: 191 G--VAC 194
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 54.8 bits (132), Expect = 5e-08
Identities = 64/255 (25%), Positives = 113/255 (44%), Gaps = 53/255 (20%)
Query: 150 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQV--SGKITYNGHGFKEFVP 207
ILD++S I+P + ++G SGK+TL +L V +G++ +GH P
Sbjct: 17 ILDNISLRIKPGEVVGIVGRSGSGKSTL-----TKLIQRFYVPENGRVLVDGHDLALADP 71
Query: 208 PRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIF 267
A++ +Q V ++E + F R+ IA P ++
Sbjct: 72 ----AWLRRQVGVV----LQENVLFNRSI---------------RDNIALADPGMSMERV 108
Query: 268 MKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARV 327
+++ L G ++I + L DT+VG E G+SGGQ++R+ L+ R+
Sbjct: 109 IEAAKLAGAH-----DFISE---LPEGYDTIVG-EQGAGLSGGQRQRIAIARALIHNPRI 159
Query: 328 LFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYEL-----FDDVILLS 382
L DE ++ LD + + I++ + G TVI + A+ L D +I++
Sbjct: 160 LIFDEATSALDYESEHAIMRNMH---DICAGRTVIII------AHRLSTVKNADRIIVME 210
Query: 383 EGQIVYQGPRVSVLD 397
+G+IV QG +L
Sbjct: 211 KGRIVEQGSHDELLA 225
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 54.5 bits (132), Expect = 5e-08
Identities = 59/249 (23%), Positives = 108/249 (43%), Gaps = 55/249 (22%)
Query: 150 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPP- 208
+L D+S I L+GP SGK+TL+ L R + SG+I +GH +++
Sbjct: 17 VLRDISLDIPAGETVALVGPSGSGKSTLV-NLIPRF--YDVDSGRILIDGHDVRDYTLAS 73
Query: 209 --RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDI 266
R VSQ + F D + E IA +P +
Sbjct: 74 LRRQIGLVSQ-----------DVFLF----------NDTV-----AENIAYGRPGATREE 107
Query: 267 FMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPAR 326
++ + + E+IM+ L DT++G+ +K +SGGQ++R+ L+
Sbjct: 108 VEEA-----ARAANAHEFIME---LPEGYDTVIGERGVK-LSGGQRQRIAIARALLKDPP 158
Query: 327 VLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVI-----SLLQPAPEAYELFDDVILL 381
+L +DE ++ LD+ + + L+ + + TT + S ++ A D +++L
Sbjct: 159 ILILDEATSALDTESERLVQAALERLMK--NRTTFVIAHRLSTIENA-------DRIVVL 209
Query: 382 SEGQIVYQG 390
+G+IV +G
Sbjct: 210 EDGKIVERG 218
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.5 bits (137), Expect = 5e-08
Identities = 52/195 (26%), Positives = 88/195 (45%), Gaps = 35/195 (17%)
Query: 845 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARIS 904
L NV+ R G + +L G +GAGK+TLM VL+G G EG+I G + + I
Sbjct: 21 LDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQ---ASNIR 77
Query: 905 GYCEQND---IHS-----PGLTVLESLLFSAWLRLPSEI--------ELETQRAFVEEVM 948
E+ IH L+VLE++ L +EI + RA ++++
Sbjct: 78 D-TERAGIAIIHQELALVKELSVLENIF------LGNEITPGGIMDYDAMYLRA--QKLL 128
Query: 949 ELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVM 1008
++L +G G+ Q++ + IA L ++ +DEPT+ L A+++
Sbjct: 129 AQLKLDINPATPVGNLGLG-----QQQLVEIAKALNKQARLLILDEPTASLTESETAVLL 183
Query: 1009 RTVRNIVNTGRTIVC 1023
+R++ G I C
Sbjct: 184 DIIRDLKAHG--IAC 196
|
Length = 506 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.8 bits (132), Expect = 6e-08
Identities = 69/258 (26%), Positives = 104/258 (40%), Gaps = 56/258 (21%)
Query: 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGF-----K 203
T+L LS ++T L+G SGK+TLL L GR H G+I + K
Sbjct: 25 TLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKML-GR--HQPPSEGEILLDAQPLESWSSK 81
Query: 204 EFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELAR-----REKIAGI 258
F R AY+ QQ MTVRE + +G +Y L R REK
Sbjct: 82 AFA--RKVAYLPQQLPAAEGMTVRELV-------AIG-RYPWHGALGRFGAADREK---- 127
Query: 259 KPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTG 318
VE + ++GL A LV +SGG+++R
Sbjct: 128 -----------------------VEEAISLVGLKPLAHRLV-----DSLSGGERQRAWIA 159
Query: 319 ELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDV 378
L+ +R L +DE ++ LD + ++ L H G TVI++L A D +
Sbjct: 160 MLVAQDSRCLLLDEPTSALDIAHQVDVLA-LVHRLSQERGLTVIAVLHDINMAARYCDYL 218
Query: 379 ILLSEGQIVYQGPRVSVL 396
+ L G+++ QG ++
Sbjct: 219 VALRGGEMIAQGTPAELM 236
|
Length = 265 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 54.5 bits (132), Expect = 6e-08
Identities = 65/259 (25%), Positives = 106/259 (40%), Gaps = 63/259 (24%)
Query: 144 NRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFK 203
+R + IL LS I P + L+G GK+T++ +L R + SG+I +G +
Sbjct: 12 SRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVV-SLLERF--YDPTSGEILLDGVDIR 68
Query: 204 EFVPPRTS---AYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARRE-KIAGIK 259
+ VSQ+ + + T+ E + + K D E K A I
Sbjct: 69 DLNLRWLRSQIGLVSQEP-VLFDGTIAENIRY--------GKPDATDEEVEEAAKKANI- 118
Query: 260 PDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKG--ISGGQKKRLTT 317
F+ S G DTLVG+ +G +SGGQK+R+
Sbjct: 119 -----HDFIMSLPDGY--------------------DTLVGE---RGSQLSGGQKQRIAI 150
Query: 318 GELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVI------SLLQPAPEA 371
L+ ++L +DE ++ LD+ + + + L RA+ G T I S ++ A
Sbjct: 151 ARALLRNPKILLLDEATSALDAESEKLVQEALD---RAMKGRTTIVIAHRLSTIRNA--- 204
Query: 372 YELFDDVILLSEGQIVYQG 390
D + +L GQ+V QG
Sbjct: 205 ----DLIAVLQNGQVVEQG 219
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 54.5 bits (132), Expect = 6e-08
Identities = 50/200 (25%), Positives = 86/200 (43%), Gaps = 33/200 (16%)
Query: 859 ALVGVSGAGKTTLMDVLAGRKTGGII---EGDIYISGYPKRQETFARISGYCEQNDIHSP 915
L+G +GAGK+TL+ +LA GI G + + G R+S +P
Sbjct: 52 GLIGRNGAGKSTLLRLLA-----GIYPPDSGTVTVRG---------RVSSLLGLGGGFNP 97
Query: 916 GLTVLESLLFSAWL--RLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQ 973
LT E++ + L EI ++E++E EL G I LP + S+
Sbjct: 98 ELTGRENIYLNGRLLGLSRKEI-----DEKIDEIIEFSEL----GDFIDLP-VKTYSSGM 147
Query: 974 RKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIF 1033
+ RL A+ P I+ +DE + DA R +R ++ G+T++ H
Sbjct: 148 KARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSH--DPSSI 205
Query: 1034 ESF-DELLFMKRGGELIYAG 1052
+ D L +++ G++ + G
Sbjct: 206 KRLCDRALVLEK-GKIRFDG 224
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 53.8 bits (130), Expect = 7e-08
Identities = 46/198 (23%), Positives = 68/198 (34%), Gaps = 47/198 (23%)
Query: 143 GNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGF 202
R + T+ DLS + + GP +GKTTLL LAG L +G++ + G
Sbjct: 10 CERGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAG-LLR--PDAGEVYWQGEPI 66
Query: 203 KEF--VPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKP 260
+ + Y+ Q E+T E L F + G G+
Sbjct: 67 QNVRESYHQALLYLGHQPGIKTELTALENLHFWQRFHGSGN---------------AATI 111
Query: 261 DEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGEL 320
E L GL D VG +S GQ++R+ L
Sbjct: 112 WEALAQV----------------------GLAGLEDLPVGQ-----LSAGQQRRVALARL 144
Query: 321 LVGPARVLFMDEISNGLD 338
+ PA + +DE LD
Sbjct: 145 WLSPAPLWILDEPFTALD 162
|
Length = 209 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.8 bits (133), Expect = 7e-08
Identities = 71/282 (25%), Positives = 107/282 (37%), Gaps = 79/282 (28%)
Query: 136 RQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKI 195
R L + G R T+LDD+S +RP + +LGP +GK+TLL AL+G L SG++
Sbjct: 6 RNLSVRLGGR---TLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPD---SGEV 59
Query: 196 TYNGHGFKEFVPP---RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARR 252
NG ++ P R A + Q +L F
Sbjct: 60 RLNGRPLADWSPAELARRRAVLPQH----------SSLSFP---------------FTVE 94
Query: 253 EKIA-GIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCAD----TLVGDEMLKGI 307
E +A G P L + +V + + L A L
Sbjct: 95 EVVAMGRAP----------HGLSRAEDDALVAAALAQVDLAHLAGRDYPQL--------- 135
Query: 308 SGGQKKR------LTTGELLVGPARVLFMDEISNGLDSS---TTYQIIKYLKHSTRALDG 358
SGG+++R L GP R L +DE ++ LD + ++ + L H G
Sbjct: 136 SGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHE----RG 191
Query: 359 TTVISLL----QPAPEAYELFDDVILLSEGQIVYQGPRVSVL 396
VI +L A A D ++LL +G++V G VL
Sbjct: 192 LAVIVVLHDLNLAARYA----DRIVLLHQGRLVADGTPAEVL 229
|
Length = 258 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 56.0 bits (135), Expect = 7e-08
Identities = 60/221 (27%), Positives = 95/221 (42%), Gaps = 25/221 (11%)
Query: 847 NVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIE---GDIYISGYPKRQETFA 901
NV+ + G + +VG SGAGKTTL ++AG T G + GD ++ +
Sbjct: 302 NVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRG 361
Query: 902 RISGYC----EQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLS 957
R Y ++ D++ P TVL++L + L LP EL +A + M +
Sbjct: 362 RAKRYIGILHQEYDLY-PHRTVLDNLTEAIGLELPD--ELARMKAVITLKMVGFDEEKAE 418
Query: 958 GALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNT 1017
L P + LS +R R+ +A L+ P IV +DEPT +D I V + +
Sbjct: 419 EILDKYP--DELSEGERHRVALAQVLIKEPRIVILDEPTGTMD----PITKVDVTHSILK 472
Query: 1018 GR-----TIVCTIHQPSIDIFESFDELLFMKRGGELIYAGP 1053
R T + H + + D M R G+++ G
Sbjct: 473 AREEMEQTFIIVSHDMDF-VLDVCDRAALM-RDGKIVKIGD 511
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 55.8 bits (135), Expect = 8e-08
Identities = 57/214 (26%), Positives = 95/214 (44%), Gaps = 24/214 (11%)
Query: 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETF 900
R +L ++ G A+VG SGAGK+T++ +L + + G I I G
Sbjct: 275 RRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLF--RFYDVNSGSITIDGQ------- 325
Query: 901 ARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGAL 960
I +Q+ + G+ +++LF+ + I+ A EEV E + +
Sbjct: 326 -DIRDVTQQSLRRAIGIVPQDTVLFNDTIA--YNIKYGRPDATAEEVGAAAEAAQIHDFI 382
Query: 961 IGLP-------GINGL--STEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTV 1011
LP G GL S +++R+ IA ++ NP I+ +DE TS LD + +
Sbjct: 383 QSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAAL 442
Query: 1012 RNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 1045
R V+ GRT + H+ S I DE++ + G
Sbjct: 443 R-EVSAGRTTLVIAHRLSTII--DADEIIVLDNG 473
|
Length = 497 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 54.2 bits (131), Expect = 8e-08
Identities = 62/244 (25%), Positives = 93/244 (38%), Gaps = 65/244 (26%)
Query: 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLM-------DVLAGRKTGGIIEGDIYISGYPK 895
+ L N+ +TAL+G SG GK+TL+ D++ G + IEG + G
Sbjct: 15 EALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVR----IEGKVLFDG--- 67
Query: 896 RQETFARISGYCEQNDIHSPGLTVLE-----SLLFSAWLRLPSEI------ELETQ---- 940
DI+ + V+E ++F P I
Sbjct: 68 --------------QDIYDKKIDVVELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKD 113
Query: 941 RAFVEEVMELVELTSLSGALIGLP---------GINGLSTEQRKRLTIAVELVANPSIVF 991
+ ++E++E SL A L GLS Q++RL IA L P ++
Sbjct: 114 KKELDEIVE----ESLKKA--ALWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLL 167
Query: 992 MDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIH--QPSIDIFESFDELLFMKRGGELI 1049
+DEPTS LD A + ++ + TIV H Q + I D F GEL+
Sbjct: 168 LDEPTSALDPIATGKIEELIQEL-KKKYTIVIVTHNMQQAARI---SDRTAFFYD-GELV 222
Query: 1050 YAGP 1053
GP
Sbjct: 223 EYGP 226
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 53.8 bits (130), Expect = 1e-07
Identities = 54/275 (19%), Positives = 92/275 (33%), Gaps = 64/275 (23%)
Query: 141 YRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGH 200
Y G + L+++S I ++G SGK+TL LAG SG I +G
Sbjct: 13 YGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPS---SGSILLDG- 68
Query: 201 GFKEFVP-PRTSAYVSQ-----QD-------WQVAEMTVRETLDFAGQCQGVGSKYDMIT 247
K P R A+ QD + + E L G + +++
Sbjct: 69 --KPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLD 126
Query: 248 ELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGI 307
++ +P E +
Sbjct: 127 QVGLPPSFLDRRPHE--------------------------------------------L 142
Query: 308 SGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQP 367
SGGQ++R+ L+ ++L +DE ++ LD S QI+ L + G T + +
Sbjct: 143 SGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKER-GLTYLFISHD 201
Query: 368 APEAYELFDDVILLSEGQIVYQGPRVSVLDFFASM 402
+ D + ++ GQIV GP +L +
Sbjct: 202 LALVEHMCDRIAVMDNGQIVEIGPTEELLSHPSHP 236
|
Length = 252 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 55.9 bits (135), Expect = 1e-07
Identities = 55/209 (26%), Positives = 91/209 (43%), Gaps = 22/209 (10%)
Query: 853 RPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQ--N 910
PG ALVG SG+GK+TL++++ + G I + G+ T A +
Sbjct: 356 EPGETVALVGRSGSGKSTLVNLIP--RFYEPDSGQILLDGHDLADYTLASLRRQVALVSQ 413
Query: 911 DIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGAL-IGLP---GI 966
D+ T+ ++ + + + RA +E + L +GL G
Sbjct: 414 DVVLFNDTIANNIAYGR----TEQAD----RAEIERALAAAYAQDFVDKLPLGLDTPIGE 465
Query: 967 NG--LSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCT 1024
NG LS QR+RL IA L+ + I+ +DE TS LD + +V + ++ GRT +
Sbjct: 466 NGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQ-GRTTLVI 524
Query: 1025 IHQPSIDIFESFDELLFMKRGGELIYAGP 1053
H+ S E D ++ M G ++ G
Sbjct: 525 AHRLS--TIEKADRIVVMDD-GRIVERGT 550
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 1e-07
Identities = 51/189 (26%), Positives = 90/189 (47%), Gaps = 12/189 (6%)
Query: 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLM---DVLAGRKTGGIIEGDIYISGYPKRQET 899
Q+L N+ G + ++G SG+GK+TL+ + L +G +I + ++ PK E
Sbjct: 15 QVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVND-PKVDER 73
Query: 900 FARI-SGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSG 958
R +G Q P LT LE+++F P + ++ ++ EL+ L+
Sbjct: 74 LIRQEAGMVFQQFYLFPHLTALENVMFG-----PLRVRGASKEEAEKQARELLAKVGLAE 128
Query: 959 ALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTG 1018
P + LS Q++R+ IA L P ++ DEPTS LD V++ ++++ G
Sbjct: 129 RAHHYP--SELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEG 186
Query: 1019 RTIVCTIHQ 1027
T+V H+
Sbjct: 187 MTMVIVTHE 195
|
Length = 240 |
| >gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.8 bits (130), Expect = 1e-07
Identities = 53/179 (29%), Positives = 80/179 (44%), Gaps = 41/179 (22%)
Query: 847 NVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIE-GDIYISGYPKRQ------ 897
NV R + +L+G +GAGKTT+ + L G + TGG I +I G P Q
Sbjct: 23 NVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGV 82
Query: 898 -ETFARISGYCEQNDIHSPGLTVLESLL-----------FSAWLRLP----SEIELETQR 941
TF + + E +TV+E+LL FS L+ P +E E +
Sbjct: 83 VRTFQHVRLFRE--------MTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRA 134
Query: 942 AFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLD 1000
A E + L+E + L+ Q++RL IA +V P I+ +DEP +GL+
Sbjct: 135 ATWLERVGLLEHANRQAG--------NLAYGQQRRLEIARCMVTQPEILMLDEPAAGLN 185
|
Length = 255 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 54.2 bits (131), Expect = 1e-07
Identities = 58/224 (25%), Positives = 93/224 (41%), Gaps = 40/224 (17%)
Query: 847 NVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIE---GDIYISGYPKRQETFARI 903
+V+ R G + ++G+SG+GK+TL+ R +IE G + I G + +
Sbjct: 42 DVSLDVREGEIFVIMGLSGSGKSTLL-----RCINRLIEPTSGKVLIDGQDIAAMSRKEL 96
Query: 904 S-------GYCEQNDIHSPGLTVLESLLFSAWLR-LPSEIELETQRAFVEEVMELVELTS 955
Q+ P TVLE++ F ++ +P E RA E +ELV L
Sbjct: 97 RELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREE--RA--AEALELVGLEG 152
Query: 956 LSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLD----ARAAAIVMRTV 1011
+ LS ++R+ +A L +P I+ MDE S LD ++R
Sbjct: 153 WEHKYP-----DELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQ 207
Query: 1012 RNIVNTGRTIVCTIHQPSIDIFESF---DELLFMKRGGELIYAG 1052
+ +TIV H D+ E+ D + MK G L+ G
Sbjct: 208 AEL---QKTIVFITH----DLDEALRLGDRIAIMK-DGRLVQVG 243
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 53.3 bits (128), Expect = 1e-07
Identities = 52/195 (26%), Positives = 93/195 (47%), Gaps = 17/195 (8%)
Query: 855 GVLTALVGVSGAGKTTLMDVLAGRKT---GGIIEGDIYISGYPKRQETFARISGYCEQND 911
G + A++G SGAGK+TL++++AG G I D +G Q + + + E N
Sbjct: 24 GEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSML--FQENNL 81
Query: 912 IHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLST 971
LTV +++ L L ++L ++ E+V++ + ++ L LP LS
Sbjct: 82 F--AHLTVRQNI----GLGLHPGLKLNAEQQ--EKVVDAAQQVGIADYLDRLP--EQLSG 131
Query: 972 EQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSI 1030
QR+R+ +A LV I+ +DEP S LD ++ V+ + + RT++ H S
Sbjct: 132 GQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLS- 190
Query: 1031 DIFESFDELLFMKRG 1045
D ++ + +G
Sbjct: 191 DARAIASQIAVVSQG 205
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C | Back alignment and domain information |
|---|
Score = 52.8 bits (127), Expect = 1e-07
Identities = 58/220 (26%), Positives = 90/220 (40%), Gaps = 43/220 (19%)
Query: 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFAR 902
+L NV+ + G +VG +GAGK+TL +LA + EG I I G
Sbjct: 22 PVLKNVSFKVKAGEKIGIVGRTGAGKSTL--ILALFRFLEAEEGKIEIDGI--------- 70
Query: 903 ISGYCEQNDIHSPGLTVLES---------LLFSAWLRLPSEIELETQRAFVEEVMELVEL 953
DI + L L S LFS +R + E EE+ + +
Sbjct: 71 --------DISTIPLEDLRSSLTIIPQDPTLFSGTIRSNLDPFDEYSD---EEIYGALRV 119
Query: 954 TSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRN 1013
+ G LS QR+ L +A L+ P ++ +DE T+ +D A++ +T+R
Sbjct: 120 SE---------GGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIRE 170
Query: 1014 IVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGP 1053
T TI+ H+ I +D++L M G Y P
Sbjct: 171 EF-TNSTILTIAHRLRTII--DYDKILVMDAGEVKEYDHP 207
|
Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 2e-07
Identities = 64/250 (25%), Positives = 105/250 (42%), Gaps = 52/250 (20%)
Query: 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQV-SGKITYNGH---GFKE 204
+LDD+S I +T ++GP +GK+TLL ++ RL L+ SG+IT +G
Sbjct: 15 VVLDDVSLDIPKGGITSIIGPNGAGKSTLL-SMMSRL---LKKDSGEITIDGLELTSTPS 70
Query: 205 FVPPRTSAYVSQQDWQVAEMTVRETLDFAGQ---CQGVGSKYDMITELARREKIAGIKPD 261
+ + + Q++ + +TVR+ + F G+ QG +K D R I
Sbjct: 71 KELAKKLSILKQENHINSRLTVRDLVGF-GRFPYSQGRLTKED-------RRIINE---- 118
Query: 262 EDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELL 321
+EY + + L D L +SGGQ++R +L
Sbjct: 119 -------------------AIEY-LHLEDLS--------DRYLDELSGGQRQRAFIAMVL 150
Query: 322 VGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILL 381
+ +DE N LD + QI+K L+ L T V+ +L A D ++ L
Sbjct: 151 AQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVV-VLHDINFASCYSDHIVAL 209
Query: 382 SEGQIVYQGP 391
G++V QG
Sbjct: 210 KNGKVVKQGS 219
|
Length = 252 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 54.2 bits (130), Expect = 2e-07
Identities = 67/254 (26%), Positives = 105/254 (41%), Gaps = 54/254 (21%)
Query: 150 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPR 209
+++DLS I LLGP +GK+T+ L LG GKIT G E VP R
Sbjct: 19 VVNDLSFTIARGECFGLLGPNGAGKSTIARML---LGMISPDRGKITVLG----EPVPSR 71
Query: 210 TSA------YVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDED 263
V Q D E TVRE +
Sbjct: 72 ARLARVAIGVVPQFDNLDPEFTVRE----------------------------------N 97
Query: 264 LDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVG 323
L +F + F + ++ V+ +++ L++ AD V +SGG K+RLT L+
Sbjct: 98 LLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVAL-----LSGGMKRRLTLARALIN 152
Query: 324 PARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSE 383
++L +DE + GLD + I + L+ S A G T++ EA L D + +L
Sbjct: 153 DPQLLILDEPTTGLDPHARHLIWERLR-SLLAR-GKTILLTTHFMEEAERLCDRLCVLES 210
Query: 384 GQIVYQGPRVSVLD 397
G+ + +G +++D
Sbjct: 211 GRKIAEGRPHALID 224
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 53.3 bits (128), Expect = 2e-07
Identities = 65/278 (23%), Positives = 111/278 (39%), Gaps = 46/278 (16%)
Query: 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLL---LALAGRLGHHLQVSGKITYNGHGFKE 204
LT+LD L+ + L+GP SGK+T+L + L +QV G+ Y+ G
Sbjct: 13 LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNG 72
Query: 205 FVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDL 264
+ P ++ Q ++ M + F + D +TE G+ E
Sbjct: 73 PLVPADEKHLRQMRNKIG-MVFQSFNLFPHKTV-----LDNVTEAPVLVL--GMARAEAE 124
Query: 265 DIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGP 324
M+ ++ ++GL AD D M +SGGQ++R+ L
Sbjct: 125 KRAME---------------LLDMVGL---ADKA--DHMPAQLSGGQQQRVAIARALAMR 164
Query: 325 ARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPE---AYELFDDVILL 381
+V+ DE+++ LD +++ + R L +++L E A E D V
Sbjct: 165 PKVMLFDEVTSALDPELVGEVLNVI----RRLASEHDLTMLLVTHEMGFAREFADRVCFF 220
Query: 382 SEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEV 419
+G+IV QG + F PK + +FL +V
Sbjct: 221 DKGRIVEQGKPDEI--------FRQPKEERTREFLSKV 250
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.3 bits (128), Expect = 2e-07
Identities = 59/209 (28%), Positives = 97/209 (46%), Gaps = 27/209 (12%)
Query: 855 GVLTALVGVSGAGKTTLMDVLAGRKTGGIIE---GDIYISGYP-----KRQETFARISGY 906
G +TA++G +GAGK+TL L GI++ G I G P K G
Sbjct: 32 GEVTAILGGNGAGKSTLFQNL-----NGILKPSSGRILFDGKPIDYSRKGLMKLRESVGM 86
Query: 907 CEQNDIHSP-GLTVLESLLFSAW-LRLPSEIELETQRAFVEEVMELVELTSLSGALIGLP 964
Q+ + +V + + F A L+LP E E ++ V+ ++ + L
Sbjct: 87 VFQDPDNQLFSASVYQDVSFGAVNLKLP---EDEVRKR-VDNALKRTGIEHLKDK----- 137
Query: 965 GINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVN-TGRTIVC 1023
+ LS Q+KR+ IA LV P ++ +DEPT+GLD + +M+ + + G TI+
Sbjct: 138 PTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIII 197
Query: 1024 TIHQPSIDIFESFDELLFMKRGGELIYAG 1052
H IDI + + +F+ + G +I G
Sbjct: 198 ATH--DIDIVPLYCDNVFVMKEGRVILQG 224
|
Length = 283 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.3 bits (128), Expect = 2e-07
Identities = 59/249 (23%), Positives = 104/249 (41%), Gaps = 55/249 (22%)
Query: 151 LDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNG----HGFKEFV 206
L ++ I+ +T +LG +GK+TL L G L SG+I ++G + K +
Sbjct: 22 LKGININIKKGEVTAILGGNGAGKSTLFQNLNGILK---PSSGRILFDGKPIDYSRKGLM 78
Query: 207 PPRTSAYVSQQ--DWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDL 264
R S + Q D Q+ +V + + F + E+ +R
Sbjct: 79 KLRESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPED-----EVRKR------------ 121
Query: 265 DIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGP 324
V+ +K G++ + D+ +S GQKKR+ +LV
Sbjct: 122 -----------------VDNALKRTGIEH-----LKDKPTHCLSFGQKKRVAIAGVLVME 159
Query: 325 ARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISL--LQPAPEAYELF-DDVILL 381
+VL +DE + GLD +I+K L + L T +I+ + P L+ D+V ++
Sbjct: 160 PKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVP----LYCDNVFVM 215
Query: 382 SEGQIVYQG 390
EG+++ QG
Sbjct: 216 KEGRVILQG 224
|
Length = 283 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 53.3 bits (128), Expect = 3e-07
Identities = 63/249 (25%), Positives = 101/249 (40%), Gaps = 58/249 (23%)
Query: 150 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPR 209
+++ LS + LLGP +GK+T+ + LG +GKIT G VP R
Sbjct: 56 VVNGLSFTVASGECFGLLGPNGAGKSTIARMI---LGMTSPDAGKITVLG----VPVPAR 108
Query: 210 TSA------YVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDED 263
V Q D E TVRE +
Sbjct: 109 ARLARARIGVVPQFDNLDLEFTVRE----------------------------------N 134
Query: 264 LDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVG 323
L +F + F + ++ V+ +++ L++ AD V D +SGG K+RLT L+
Sbjct: 135 LLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSD-----LSGGMKRRLTLARALIN 189
Query: 324 PARVLFMDEISNGLDSSTTYQIIKYLKHSTRAL--DGTTVISLLQPAPEAYELFDDVILL 381
++L +DE + GLD + I + L R+L G T++ EA L D + +L
Sbjct: 190 DPQLLILDEPTTGLDPHARHLIWERL----RSLLARGKTILLTTHFMEEAERLCDRLCVL 245
Query: 382 SEGQIVYQG 390
G+ + +G
Sbjct: 246 EAGRKIAEG 254
|
Length = 340 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.5 bits (126), Expect = 3e-07
Identities = 59/227 (25%), Positives = 89/227 (39%), Gaps = 65/227 (28%)
Query: 844 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGI------IEGDIYISGYPKRQ 897
+L +++ PG +TAL+G +GAGK+TL+ LAG TGG + GD+ ++G P
Sbjct: 16 ILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAA 75
Query: 898 ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVEL---- 953
I +P L L ++L A Q AF E+V L
Sbjct: 76 --------------IDAPRLARLRAVLPQA-----------AQPAFAFSAREIVLLGRYP 110
Query: 954 -TSLSGAL-----------IGLPG--------INGLSTEQRKRLTIAVEL---------V 984
+GAL + L G + LS + R+ A L
Sbjct: 111 HARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQFARVLAQLWPPHDAA 170
Query: 985 ANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTI-HQPSI 1030
P + +DEPT+ LD ++ TVR + V I H P++
Sbjct: 171 QPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNL 217
|
Length = 272 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 52.2 bits (126), Expect = 3e-07
Identities = 36/124 (29%), Positives = 61/124 (49%), Gaps = 18/124 (14%)
Query: 287 KILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQII 346
KI+ DT+VG+ LK +SGG+K+R+ ++ +L +DE ++ LD+ T +I
Sbjct: 119 KIMRFPDGYDTIVGERGLK-LSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQ 177
Query: 347 KYLKHSTRALDGTTVISLLQPAPEAYELF-----DDVILLSEGQIVYQGPRVSVLD---F 398
L+ G T I + A+ L D +I+L +G+IV +G +L
Sbjct: 178 AALR---DVSKGRTTIVI------AHRLSTIVNADKIIVLKDGRIVERGTHEELLAKGGL 228
Query: 399 FASM 402
+A M
Sbjct: 229 YAEM 232
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 52.2 bits (125), Expect = 3e-07
Identities = 48/226 (21%), Positives = 88/226 (38%), Gaps = 44/226 (19%)
Query: 166 LLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP-PRTSAYVSQQDWQVAEM 224
++GP +GK+TLL +AG + SG I N P R + + Q++ A +
Sbjct: 29 IMGPSGAGKSTLLNLIAGFI---EPASGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHL 85
Query: 225 TVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEY 284
TVR+ + G+ P +K A +K V
Sbjct: 86 TVRQNIGL------------------------GLHPG------LKLNAEQQEK----VVD 111
Query: 285 IMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQ 344
+ +G+ D L +SGGQ++R+ LV P +L +DE + LD +
Sbjct: 112 AAQQVGIADYLDRLPEQ-----LSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREE 166
Query: 345 IIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQG 390
++ +K T ++ + +A + + ++S+G+I
Sbjct: 167 MLALVKQLCSERQRTLLMVTHHLS-DARAIASQIAVVSQGKIKVVS 211
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.8 bits (127), Expect = 3e-07
Identities = 58/223 (26%), Positives = 96/223 (43%), Gaps = 33/223 (14%)
Query: 845 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKT---GGIIEGDIYISGYPKRQE--- 898
L +V G TA +G +G+GK+T+M +L G G + D I+ K ++
Sbjct: 23 LFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQ 82
Query: 899 ---------TFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVME 949
F + E TVL+ + F S+ E E A E +
Sbjct: 83 IRKKVGLVFQFPESQLFEE---------TVLKDVAFGPQNFGVSQEEAE---ALAREKLA 130
Query: 950 LVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMR 1009
LV +S +L LS Q +R+ IA L P I+ +DEPT+GLD + +M
Sbjct: 131 LV---GISESLFEKNPFE-LSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMT 186
Query: 1010 TVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAG 1052
+ + +G TIV H +D ++ + +++ G+L+ +G
Sbjct: 187 LFKKLHQSGMTIVLVTHL--MDDVANYADFVYVLEKGKLVLSG 227
|
Length = 280 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.8 bits (127), Expect = 3e-07
Identities = 54/203 (26%), Positives = 90/203 (44%), Gaps = 21/203 (10%)
Query: 858 TALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARIS---GYCEQN-DIH 913
TAL+G +GAGK+TL+ L G G + + G E + G Q+ D
Sbjct: 34 TALLGPNGAGKSTLLLHLNGIYLPQ--RGRVKVMGREVNAENEKWVRSKVGLVFQDPDDQ 91
Query: 914 SPGLTVLESLLFSAW-LRL-PSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLST 971
TV + + F + L E+E +R VEE ++ V + LS
Sbjct: 92 VFSSTVWDDVAFGPVNMGLDKDEVE---RR--VEEALKAVRMWDFRDK-----PPYHLSY 141
Query: 972 EQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSID 1031
Q+KR+ IA L +P ++ +DEP + LD R +M + + N G+T++ H +D
Sbjct: 142 GQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATH--DVD 199
Query: 1032 IFESF-DELLFMKRGGELIYAGP 1053
+ + D+++ +K G L
Sbjct: 200 LAAEWADQVIVLKEGRVLAEGDK 222
|
Length = 274 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 3e-07
Identities = 52/207 (25%), Positives = 88/207 (42%), Gaps = 46/207 (22%)
Query: 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE 898
E Q+L N++ + G AL+G SG+GK+TL+ +L G +G+I + G P
Sbjct: 12 EQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQ--QGEITLDGVP---- 65
Query: 899 TFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSG 958
+S + L S I + QR + L + T +
Sbjct: 66 ----VSDLEKA---------------------LSSLISVLNQRPY------LFDTTLRNN 94
Query: 959 ALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTG 1018
+G S +R+RL +A L+ + IV +DEPT GLD ++ + V
Sbjct: 95 --LGRR----FSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFE-VLKD 147
Query: 1019 RTIVCTIHQPSIDIFESFDELLFMKRG 1045
+T++ H + E D++LF++ G
Sbjct: 148 KTLIWITHH--LTGIEHMDKILFLENG 172
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 4e-07
Identities = 55/252 (21%), Positives = 98/252 (38%), Gaps = 51/252 (20%)
Query: 147 KLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV 206
+D++S + P + LLGP +GKTT + G L G+IT+NG + +
Sbjct: 14 DKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLE---PTEGEITWNGGPLSQEI 70
Query: 207 PPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDI 266
R Y+ ++ +MTV + L + + +G+ + +I + L
Sbjct: 71 KNRI-GYLPEERGLYPKMTVEDQLKYLAELKGM-----------PKAEIQ-----KKLQA 113
Query: 267 FMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPAR 326
+++ + G+KT + E+ KG QK + + ++
Sbjct: 114 WLERLEIVGKKTKKI-------------------KELSKGNQ--QKIQFISA--VIHEPE 150
Query: 327 VLFMDEISNGLDSSTT---YQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSE 383
+L +DE +GLD I LK G T+I EL D +++L +
Sbjct: 151 LLILDEPFSGLDPVNVELLKDAIFELKEE-----GATIIFSSHRMEHVEELCDRLLMLKK 205
Query: 384 GQIVYQGPRVSV 395
GQ V G +
Sbjct: 206 GQTVLYGTVEDI 217
|
Length = 300 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 4e-07
Identities = 46/152 (30%), Positives = 75/152 (49%), Gaps = 17/152 (11%)
Query: 853 RPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFAR--ISGYCEQN 910
G A++G SGAGK+TL++++AG T G + ++G +R +S ++N
Sbjct: 23 ERGERVAILGPSGAGKSTLLNLIAGFLTPA--SGSLTLNGQDHTTTPPSRRPVSMLFQEN 80
Query: 911 DIHSPGLTVLE--SLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGING 968
++ LTV + L + L+L + QR + + + + L L LPG
Sbjct: 81 NLF-SHLTVAQNIGLGLNPGLKLNAA-----QREKLHAIARQMGIEDL---LARLPG--Q 129
Query: 969 LSTEQRKRLTIAVELVANPSIVFMDEPTSGLD 1000
LS QR+R+ +A LV I+ +DEP S LD
Sbjct: 130 LSGGQRQRVALARCLVREQPILLLDEPFSALD 161
|
Length = 232 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.2 bits (128), Expect = 4e-07
Identities = 68/240 (28%), Positives = 105/240 (43%), Gaps = 44/240 (18%)
Query: 150 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEF-VPP 208
+L+D+S I ++ LLGP SGKTTLL +AG L H Q SG I ++G
Sbjct: 17 VLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAG-LEH--QTSGHIRFHGTDVSRLHARD 73
Query: 209 RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREK--IAGIKPDEDLDI 266
R +V Q MTV + + F +T L RRE+ A IK
Sbjct: 74 RKVGFVFQHYALFRHMTVFDNIAFG------------LTVLPRRERPNAAAIK------- 114
Query: 267 FMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPAR 326
K V +++++ L AD +SGGQK+R+ L +
Sbjct: 115 ---------AK----VTQLLEMVQLAHLADRYPAQ-----LSGGQKQRVALARALAVEPQ 156
Query: 327 VLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQI 386
+L +DE LD+ ++ ++L+ L T+V + EA E+ D V+++S+G I
Sbjct: 157 ILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVF-VTHDQEEAMEVADRVVVMSQGNI 215
|
Length = 353 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.3 bits (126), Expect = 4e-07
Identities = 56/234 (23%), Positives = 99/234 (42%), Gaps = 48/234 (20%)
Query: 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGII---EGDIYISGYPK 895
L NV+ G A++G +G+GK+T+ +L G++ G+I I G
Sbjct: 19 NSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILT-----GLLKPQSGEIKIDGITI 73
Query: 896 RQETFARIS---GYCEQN-DIHSPGLTVLESLLFSAWLRL--PSEIELETQRAFVEEVME 949
+E I G QN D G TV + + F + P ++ + ++++ +
Sbjct: 74 SKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKM-----KDIIDDLAK 128
Query: 950 LV--------ELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDA 1001
V E +LSG Q++R+ IA L NP I+ DE TS LD
Sbjct: 129 KVGMEDYLDKEPQNLSGG-------------QKQRVAIASVLALNPEIIIFDESTSMLDP 175
Query: 1002 RAAAIVMRTVRNIVNTG-RTIVCTIHQPSIDIFESF--DELLFMKRGGELIYAG 1052
+ + + + ++ T +T++ H D+ E+ D+++ G+LI G
Sbjct: 176 KGKREIKKIMVDLRKTRKKTLISITH----DMDEAILADKVIVFS-EGKLIAQG 224
|
Length = 271 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 53.6 bits (129), Expect = 4e-07
Identities = 64/233 (27%), Positives = 98/233 (42%), Gaps = 42/233 (18%)
Query: 851 AFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ----ETFARISGY 906
RPG ALVG SGAGK+TL +L + G I + G RQ E AR++
Sbjct: 362 TVRPGETVALVGPSGAGKSTLFQLL--LRFYDPQSGRILLDGVDLRQLDPAELRARMA-- 417
Query: 907 CEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLP-- 964
L + +LF+A + I A EEV + LP
Sbjct: 418 ----------LVPQDPVLFAASVM--ENIRYGRPDATDEEVEAAARAAHAHEFISALPEG 465
Query: 965 --------GINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVN 1016
G+ LS QR+R+ IA ++ + I+ +DE TS LDA + +V + + ++
Sbjct: 466 YDTYLGERGV-TLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLM- 523
Query: 1017 TGRTIVCTIHQPSIDIFESFDELLFMKRG--------GELIYAGPLGSKSCEL 1061
GRT + H+ + + D ++ M +G ELI G L ++ L
Sbjct: 524 KGRTTLIIAHRLATVL--KADRIVVMDQGRIVAQGTHAELIAKGGLYARLARL 574
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 53.1 bits (128), Expect = 4e-07
Identities = 46/156 (29%), Positives = 73/156 (46%), Gaps = 28/156 (17%)
Query: 854 PGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIE--GDIYISG-----YPKRQETFARIS 904
G+ TAL G SG+GKT+L++++AG R G IE G + + P + R
Sbjct: 24 RGI-TALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEK----RRI 78
Query: 905 GYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLP 964
GY Q+ P TV +L + W + ++ + +LV L + L P
Sbjct: 79 GYVFQDARLFPHYTVRGNLRYGMWKSMRAQFD------------QLVALLGIEHLLDRYP 126
Query: 965 GINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLD 1000
G LS +++R+ I L+ P ++ MDEP + LD
Sbjct: 127 G--TLSGGEKQRVAIGRALLTAPELLLMDEPLASLD 160
|
Length = 352 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.5 bits (126), Expect = 4e-07
Identities = 68/299 (22%), Positives = 118/299 (39%), Gaps = 58/299 (19%)
Query: 146 SKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEF 205
SK L+D+S I T L+G SGK+T+ + G L + KIT +G
Sbjct: 18 SKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAK 77
Query: 206 ----VPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPD 261
+ + D Q TV + + F + + V R ++ I D
Sbjct: 78 TVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENRAVP-----------RPEMIKIVRD 126
Query: 262 EDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLT-TGEL 320
D+ M + D +SGGQK+R+ G L
Sbjct: 127 VLADVGMLDYI----------------------------DSEPANLSGGQKQRVAIAGIL 158
Query: 321 LVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVIL 380
V P +++ +DE ++ LD + QI+K ++ + + TVIS+ EA + D V++
Sbjct: 159 AVEP-KIIILDESTSMLDPAGKEQILKLIRKLKKK-NNLTVISITHDIDEA-NMADQVLV 215
Query: 381 LSEGQIVYQGPRVSVL---DFFASMGFSCPKRKNVADFL--------QEVTSKKDQEQY 428
L +G+++ QG V + + +G P + + L QE+ +++ QY
Sbjct: 216 LDDGKLLAQGSPVEIFSKVEMLKEIGLDIPFVYKLKNKLKEKGISVPQEINTEEKLVQY 274
|
Length = 282 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 52.3 bits (126), Expect = 4e-07
Identities = 50/172 (29%), Positives = 77/172 (44%), Gaps = 29/172 (16%)
Query: 861 VGVSGAGKTTLMDVLAGR--KTGGIIE-GDIYISGYP--KRQETFARI-----SGYCEQN 910
+G +GAGK+TL++ +AG T G I + ++ KR AR+ +G
Sbjct: 38 IGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTA--- 94
Query: 911 DIHSPGLTVLESLLFSAWLR-----LPSEIELETQRAFVEEVMELVE-LTSLSGALIGLP 964
P LT+ E+L A R L S + + +F E + L L + IGL
Sbjct: 95 ----PELTIEENLAL-AESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGL- 148
Query: 965 GINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVN 1016
LS QR+ L++ + + P I+ +DE T+ LD + A VM IV
Sbjct: 149 ----LSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVE 196
|
Length = 263 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 53.3 bits (129), Expect = 5e-07
Identities = 69/307 (22%), Positives = 110/307 (35%), Gaps = 58/307 (18%)
Query: 109 VESFVHLGSRALPTIPNFIFNMTEALLR--------QLRIYRGNRSKLTI--LDDLSGII 158
+ + LG + +P E LL R R + + +DD+S +
Sbjct: 255 LAAVPRLGDEKIIRLPRRGPLRAEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDL 314
Query: 159 RPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGF----KEFVPPRTSAYV 214
R L+G SGK+TL LAG L SG I ++G E R +
Sbjct: 315 REGETLGLVGESGSGKSTLARILAGLL---PPSSGSIIFDGQDLDLTGGELRRLRRRIQM 371
Query: 215 SQQDWQVA---EMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSF 271
QD + MTV + L E L I
Sbjct: 372 VFQDPYSSLNPRMTVGDILA------------------------------EPLRIHGG-- 399
Query: 272 ALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMD 331
G + V +++++GL E+ SGGQ++R+ L ++L +D
Sbjct: 400 -GSGAERRARVAELLELVGLPPEFLDRYPHEL----SGGQRQRVAIARALALEPKLLILD 454
Query: 332 EISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQGP 391
E + LD S Q++ LK L G T + + + D V ++ +G+IV +GP
Sbjct: 455 EPVSALDVSVQAQVLNLLKDLQEEL-GLTYLFISHDLAVVRYIADRVAVMYDGRIVEEGP 513
Query: 392 RVSVLDF 398
V +
Sbjct: 514 TEKVFEN 520
|
Length = 539 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 53.3 bits (128), Expect = 5e-07
Identities = 57/229 (24%), Positives = 93/229 (40%), Gaps = 46/229 (20%)
Query: 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYIS-------G 892
D ++L N++ G + ++G SGAGK+ LM VL G G I G
Sbjct: 11 DGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCG 70
Query: 893 YPKRQETFARISGYC----EQNDIHSPGL--------------------------TVLES 922
Y +R C E ++ L TVL++
Sbjct: 71 YVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDN 130
Query: 923 LLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVE 982
+L + L EI E + A V ++L+E+ LS + + LS +++R+ +A +
Sbjct: 131 VLEA----LE-EIGYEGKEA-VGRAVDLIEMVQLSHRITHIA--RDLSGGEKQRVVLARQ 182
Query: 983 LVANPSIVFMDEPTSGLDARAAAIVMRTVRNIV-NTGRTIVCTIHQPSI 1030
L P + DEPT LD + A +V + V +G ++V T H P +
Sbjct: 183 LAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEV 231
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.5 bits (126), Expect = 5e-07
Identities = 26/85 (30%), Positives = 45/85 (52%), Gaps = 2/85 (2%)
Query: 968 GLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQ 1027
GLS Q++R+ IA L P I+ DEPT+GLD + +M+ + + +T+ H
Sbjct: 176 GLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHT 235
Query: 1028 PSIDIFESFDELLFMKRGGELIYAG 1052
+ E DE++ M + G+++ G
Sbjct: 236 ME-HVLEVADEVIVMDK-GKILKTG 258
|
Length = 320 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 6e-07
Identities = 48/208 (23%), Positives = 67/208 (32%), Gaps = 55/208 (26%)
Query: 135 LRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQ--VS 192
R L RG R + + LS + + GP GKTTLL LAG L S
Sbjct: 3 ARNLACSRGER---MLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAG-----LLRPDS 54
Query: 193 GKITYNG--HGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELA 250
G++ +NG + P R Y+ E++ E L F
Sbjct: 55 GEVRWNGTALAEQRDEPHRNILYLGHLPGLKPELSALENLHF------------------ 96
Query: 251 RREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGG 310
A I I + V GL D +S G
Sbjct: 97 ----WAAIHGGAQRTIE--------DALAAV--------GLTGFEDLPAAQ-----LSAG 131
Query: 311 QKKRLTTGELLVGPARVLFMDEISNGLD 338
Q++RL L + A + +DE + LD
Sbjct: 132 QQRRLALARLWLSRAPLWILDEPTTALD 159
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 51.8 bits (125), Expect = 6e-07
Identities = 63/273 (23%), Positives = 103/273 (37%), Gaps = 70/273 (25%)
Query: 135 LRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGK 194
+R + G+R ILD + + + +LG SGK+TLL + G L G+
Sbjct: 11 VRGVTKSFGDR---VILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLL---RPDKGE 64
Query: 195 ITYNGHGFKEFVPPRTSA------YVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITE 248
I +G + + QQ + +TV E + F + E
Sbjct: 65 ILIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAF------------PLRE 112
Query: 249 LARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGIS 308
+ P+ + L K LV GL A L E +S
Sbjct: 113 HTK-------LPESLIR------ELVLMKLELV--------GLRGAAADLYPSE----LS 147
Query: 309 GGQKKRLTTGELLVGPAR-------VLFMDEISNGLD--SSTTY-QIIKYLKHSTRALDG 358
GG +KR V AR +LF+DE ++GLD S+ ++I+ L + G
Sbjct: 148 GGMRKR-------VALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDAL----G 196
Query: 359 TTVISLLQPAPEAYELFDDVILLSEGQIVYQGP 391
TVI + + D V +L++G+++ +G
Sbjct: 197 LTVIMVTHDLDSLLTIADRVAVLADGKVIAEGT 229
|
Length = 263 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 6e-07
Identities = 61/215 (28%), Positives = 92/215 (42%), Gaps = 35/215 (16%)
Query: 845 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGII---EGDIYISGYPKRQETFA 901
L +V+ + G A+VG +G+GK+TL +L G++ G I + G +ET
Sbjct: 23 LKDVSFSVYEGEWVAIVGHNGSGKSTLAKLL-----NGLLLPEAGTITVGGMVLSEETVW 77
Query: 902 RIS---GYCEQN-DIHSPGLTVLESLLFSAWLRLPSEIELETQ----RAFVEEVMELVEL 953
+ G QN D G TV + + F LE VE V + +
Sbjct: 78 DVRRQVGMVFQNPDNQFVGATVQDDVAFG----------LENIGVPREEMVERVDQALRQ 127
Query: 954 TSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRN 1013
+ L P + LS Q++R+ IA L P I+ +DE TS LD R V+ TVR
Sbjct: 128 VGMEDFLNREP--HRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQ 185
Query: 1014 IVNTGRTIVCTI-HQPSIDIFE--SFDELLFMKRG 1045
+ V +I H D+ E D ++ M +G
Sbjct: 186 LKEQKGITVLSITH----DLDEAAQADRVIVMNKG 216
|
Length = 279 |
| >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 6e-07
Identities = 57/206 (27%), Positives = 86/206 (41%), Gaps = 19/206 (9%)
Query: 834 QEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGII----EGD 887
Q GV RL +L NV+ G AL G SGAGK+TL+ L G I EG
Sbjct: 16 QGGV---RLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGA 72
Query: 888 -IYISGYPKRQETFARIS--GYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFV 944
+ ++ R+ R GY Q P ++ LE + L E RA
Sbjct: 73 WVDLAQASPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPL-LERGVPREAARARA-- 129
Query: 945 EEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAA 1004
EL+ ++ L LP S +++R+ IA +A+ I+ +DEPT+ LDA
Sbjct: 130 ---RELLARLNIPERLWHLPP-ATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANR 185
Query: 1005 AIVMRTVRNIVNTGRTIVCTIHQPSI 1030
+V+ + G ++ H +
Sbjct: 186 QVVVELIAEAKARGAALIGIFHDEEV 211
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 |
| >gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 51.4 bits (123), Expect = 6e-07
Identities = 53/192 (27%), Positives = 83/192 (43%), Gaps = 14/192 (7%)
Query: 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVL-----AGRKTGGIIEGDIYISGYPKRQ 897
Q L ++T G L+G SGAGK++L+ VL T I S P +
Sbjct: 16 QALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDK 75
Query: 898 ETFA--RISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTS 955
R G Q P LTV E+L+ + L + RA E++++ + L
Sbjct: 76 AIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARA--EKLLKRLRLKP 133
Query: 956 LSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIV 1015
+ P LS Q++R+ IA L+ P ++ DEPT+ LD A ++ ++ +
Sbjct: 134 YADRY---P--LHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELA 188
Query: 1016 NTGRTIVCTIHQ 1027
TG T V H+
Sbjct: 189 ETGITQVIVTHE 200
|
Length = 242 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 52.8 bits (127), Expect = 7e-07
Identities = 62/249 (24%), Positives = 95/249 (38%), Gaps = 45/249 (18%)
Query: 145 RSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGH---G 201
K +L D+S I P ++GP SGK+TL+ L SG+I +G
Sbjct: 339 PGKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPT---SGEILIDGIDIRD 395
Query: 202 FKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPD 261
+ VSQ + T+RE + G E+ K+A
Sbjct: 396 ISLDSLRKRIGIVSQDPLLFSG-TIRENIAL-------GRPDATDEEIEEALKLANAH-- 445
Query: 262 EDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELL 321
E+I L DT+VG E +SGGQ++RL L
Sbjct: 446 ---------------------EFIAN---LPDGYDTIVG-ERGVNLSGGQRQRLAIARAL 480
Query: 322 VGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILL 381
+ +L +DE ++ LD+ T I LK + L G T + + + D +I+L
Sbjct: 481 LRNPPILILDEATSALDTETEALIQDALK---KLLKGRTTLIIAH-RLSTIKNADRIIVL 536
Query: 382 SEGQIVYQG 390
G+IV +G
Sbjct: 537 DNGRIVERG 545
|
Length = 567 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 7e-07
Identities = 34/162 (20%), Positives = 51/162 (31%), Gaps = 50/162 (30%)
Query: 175 TTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTS----AYVSQQDWQVAEMTVRETL 230
+TLL + G L SG I +G + V Q E+TVRE L
Sbjct: 1 STLLKLITGLL---QPTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENL 57
Query: 231 DFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILG 290
F G++ E E ++ +G
Sbjct: 58 FF------------------------GLRDKEADA---------------RAEEALERVG 78
Query: 291 LDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDE 332
L D + SGGQK+R+ L+ ++L +DE
Sbjct: 79 LPDFLDREPVGTL----SGGQKQRVAIARALLKKPKLLLLDE 116
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.9 bits (124), Expect = 7e-07
Identities = 45/158 (28%), Positives = 73/158 (46%), Gaps = 27/158 (17%)
Query: 855 GVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFARISGYCEQND 911
G TA++G +G GK+TL+ L+ T G +++ G + + AR G QN
Sbjct: 33 GHFTAIIGPNGCGKSTLLRTLSRLMTP--AHGHVWLDGEHIQHYASKEVARRIGLLAQNA 90
Query: 912 IHSPGLTVLESL---------LFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIG 962
+TV E + LF+ W + E + A V + M+ +T L+
Sbjct: 91 TTPGDITVQELVARGRYPHQPLFTRWRK-------EDEEA-VTKAMQATGITHLADQ--- 139
Query: 963 LPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLD 1000
++ LS QR+R IA+ L +I+ +DEPT+ LD
Sbjct: 140 --SVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLD 175
|
Length = 265 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 7e-07
Identities = 54/232 (23%), Positives = 93/232 (40%), Gaps = 43/232 (18%)
Query: 844 LLVNVTGAFRPGVLTALVGVSGAGKTT----LMDVLAGRKTGGIIEGDIYISGYP----- 894
L+ ++ + + G + ALVG SG+GK+ ++ +L T G+I + G P
Sbjct: 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLT--QTSGEILLDGRPLLPLS 58
Query: 895 KRQETFARISGYCEQNDIHS--PGLTVLESLLFSAWLRL-----PSEIELETQRAF---- 943
R A I QN + P T+ + + + LE A
Sbjct: 59 IRGRHIATIM----QNPRTAFNPLFTMGNHAIETLRSLGKLSKQARALILEALEAVGLPD 114
Query: 944 VEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARA 1003
EEV++ LSG ++ +R+ IA+ L+ P + DEPT+ LD
Sbjct: 115 PEEVLKKYPF-QLSGGML-------------QRVMIALALLLEPPFLIADEPTTDLDVVN 160
Query: 1004 AAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054
A V++ +R + G I+ H + + DE+ M G ++ G +
Sbjct: 161 QARVLKLLRELRQLFGTGILLITHDLGV-VARIADEVAVMDD-GRIVERGTV 210
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 51.0 bits (122), Expect = 7e-07
Identities = 46/179 (25%), Positives = 69/179 (38%), Gaps = 25/179 (13%)
Query: 854 PGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIH 913
G + G +GAGKTTL+ VLAG G I I G + +R Y
Sbjct: 36 AGEALLVQGDNGAGKTTLLRVLAGLLHVE--SGQIQIDGKTATRGDRSRFMAYLGHLPGL 93
Query: 914 SPGLTVLESLLFSAWL------RLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGIN 967
L+ LE+L F L ++P + +V L L+
Sbjct: 94 KADLSTLENLHFLCGLHGRRAKQMPGS------------ALAIVGLAGYEDTLV-----R 136
Query: 968 GLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIH 1026
LS Q+KRL +A ++ + +DEP + LD +V R + + G + T H
Sbjct: 137 QLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTH 195
|
Length = 214 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 50.1 bits (121), Expect = 8e-07
Identities = 32/110 (29%), Positives = 54/110 (49%), Gaps = 6/110 (5%)
Query: 281 VVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSS 340
V +++LGL AD + +SGG+++R+ L +L +DE ++ LD +
Sbjct: 77 YVPQALELLGLAHLADRPFNE-----LSGGERQRVLLARALAQEPPILLLDEPTSHLDIA 131
Query: 341 TTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQG 390
++++ L+ R T V+ L A D VILL +G+IV QG
Sbjct: 132 HQIELLELLRRLARERGKTVVMVLHDLNL-AARYADRVILLKDGRIVAQG 180
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 50.1 bits (121), Expect = 8e-07
Identities = 33/87 (37%), Positives = 42/87 (48%), Gaps = 13/87 (14%)
Query: 135 LRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGK 194
+ L + G R T+LDDLS I + +LGP +GK+TLL LAG L SG+
Sbjct: 2 VENLSVGYGGR---TVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPS---SGE 55
Query: 195 ITYNGH-----GFKEFVPPRTSAYVSQ 216
I +G KE R AYV Q
Sbjct: 56 ILLDGKDLASLSPKELA--RKIAYVPQ 80
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 50.3 bits (121), Expect = 8e-07
Identities = 29/87 (33%), Positives = 47/87 (54%), Gaps = 1/87 (1%)
Query: 299 VGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDG 358
V + + G+SGGQ++R+ L VL +DE ++ LD T ++ LK S +A G
Sbjct: 93 VLENIALGLSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLK-SLQAQLG 151
Query: 359 TTVISLLQPAPEAYELFDDVILLSEGQ 385
TV+ + EA L D V++L +G+
Sbjct: 152 ITVVLVTHDLDEAARLADRVVVLRDGK 178
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 50.6 bits (122), Expect = 1e-06
Identities = 56/260 (21%), Positives = 100/260 (38%), Gaps = 60/260 (23%)
Query: 139 RIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQV-SGKITY 197
+IY K+ L D++ I ++GP SGK+T LL L G L + SG++
Sbjct: 9 KIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKST-LLNLLGGL---DKPTSGEVLI 64
Query: 198 NGHGFKEFVPPRTSA-------YVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELA 250
NG + + +V Q + ++TV E ++ G +
Sbjct: 65 NGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAG-------R 117
Query: 251 RREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGG 310
R+ E ++++LGL+ E+ SGG
Sbjct: 118 RKRAA---------------------------EELLEVLGLEDRLLKKKPSEL----SGG 146
Query: 311 QKKRLTTGELLVGPARVLFMDE-ISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPA- 368
Q++R+ L+ +++ DE N LDS T ++++ L+ + T ++
Sbjct: 147 QQQRVAIARALINNPKIILADEPTGN-LDSKTAKEVLELLRELNKERGKTIIM-----VT 200
Query: 369 --PEAYELFDDVILLSEGQI 386
PE + D VI L +G+I
Sbjct: 201 HDPELAKYADRVIELKDGKI 220
|
Length = 226 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 50.2 bits (121), Expect = 1e-06
Identities = 47/200 (23%), Positives = 73/200 (36%), Gaps = 60/200 (30%)
Query: 141 YRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGH 200
Y G +T L+D+S + L+GP GK+TLL +AG SG++ +G
Sbjct: 10 YGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLER---PTSGEVLVDGE 66
Query: 201 GFKEFVPPRTSAYVSQQD----WQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIA 256
P YV QQD W +TV + + + QGV RE+
Sbjct: 67 PVTG--PGPDRGYVFQQDALLPW----LTVLDNVALGLELQGVPKA-------EARER-- 111
Query: 257 GIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRL- 315
E +++++GL + +SGG ++R+
Sbjct: 112 -------------------------AEELLELVGLSGFE-----NAYPHQLSGGMRQRVA 141
Query: 316 ---TTGELLVGPARVLFMDE 332
L V P VL +DE
Sbjct: 142 LARA---LAVDP-DVLLLDE 157
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 1e-06
Identities = 70/300 (23%), Positives = 118/300 (39%), Gaps = 64/300 (21%)
Query: 139 RIYRGNRSKLTI-LDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQ--VSGKI 195
+ + + LDD+S I + ++G +GK+TLL RL + L+ SG +
Sbjct: 9 KTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLL-----RLINLLERPTSGSV 63
Query: 196 TYNGHGFKEFVPP------RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITEL 249
+G + + Q ++ TV E + F + GV K E+
Sbjct: 64 FVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGV-PK----AEI 118
Query: 250 ARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISG 309
+R V E + +++GL AD +SG
Sbjct: 119 KQR----------------------------VAELL-ELVGLSDKADRYPAQ-----LSG 144
Query: 310 GQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAP 369
GQK+R+ L ++L DE ++ LD TT I++ LK R L G T++ L+
Sbjct: 145 GQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINREL-GLTIV-LITHEM 202
Query: 370 EAYELF-DDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVTSKKDQEQY 428
E + D V +L +G++V +G V + FA+ PK +F+ E E+
Sbjct: 203 EVVKRICDRVAVLDQGRLVEEGT---VSEVFAN-----PKHAITQEFIGETLEIDLPEEL 254
|
Length = 339 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 1e-06
Identities = 69/278 (24%), Positives = 107/278 (38%), Gaps = 66/278 (23%)
Query: 151 LDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPP-- 208
+++L+ I +L+GP SGKTT + + RL SG+I +G +E P
Sbjct: 17 VNNLNLEIAKGEFLVLIGPSGSGKTTTM-KMINRLIEP--TSGEIFIDGEDIREQDPVEL 73
Query: 209 -RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIF 267
R YV QQ MTV E + + + RE+ DE
Sbjct: 74 RRKIGYVIQQIGLFPHMTVEENIALVPKLLKWPKE-------KIRERA-----DE----- 116
Query: 268 MKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPAR- 326
++ ++GLD D +SGGQ++R VG AR
Sbjct: 117 -----------------LLALVGLD---PAEFADRYPHELSGGQQQR-------VGVARA 149
Query: 327 ------VLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVIL 380
+L MDE LD T Q+ + K + L G T++ + EA+ L D + +
Sbjct: 150 LAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQEL-GKTIVFVTHDIDEAFRLADRIAI 208
Query: 381 LSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQE 418
+ G+IV G + + S P VA+F+
Sbjct: 209 MKNGEIVQVG---TPDEILRS-----PANDFVAEFVGA 238
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Score = 50.7 bits (122), Expect = 1e-06
Identities = 62/262 (23%), Positives = 94/262 (35%), Gaps = 74/262 (28%)
Query: 154 LSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPP---RT 210
LS +R + L+GP +GK+TLL +AG L SG I + G + + R
Sbjct: 15 LSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG----SGSIQFAGQPLEAWSAAELARH 70
Query: 211 SAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKS 270
AY+SQQ M V + L + +
Sbjct: 71 RAYLSQQQTPPFAMPVFQYLTLHQP--------------------DKTRTEAVAS----- 105
Query: 271 FALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGG--QKKRLTTGELLVGP---- 324
+ + + LGLD D L + +SGG Q+ RL L V P
Sbjct: 106 ----------ALNEVAEALGLD---DKL--GRSVNQLSGGEWQRVRLAAVVLQVWPDINP 150
Query: 325 -ARVLFMDEISNGLD---SSTTYQIIKYLKHSTRALDGTTVIS------LLQPAPEAYEL 374
++L +DE N LD + +++ L V+S L+ A
Sbjct: 151 AGQLLLLDEPMNSLDVAQQAALDRLLSELC----QQGIAVVMSSHDLNHTLRHA------ 200
Query: 375 FDDVILLSEGQIVYQGPRVSVL 396
D V LL +G+++ G R VL
Sbjct: 201 -DRVWLLKQGKLLASGRRDEVL 221
|
Length = 248 |
| >gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 50.2 bits (120), Expect = 1e-06
Identities = 54/194 (27%), Positives = 74/194 (38%), Gaps = 45/194 (23%)
Query: 145 RSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKE 204
R++ + L + L+ G +GKTTLL LAG L H++ SG+I +G
Sbjct: 21 RNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLL--HVE-SGQIQIDGKTATR 77
Query: 205 FVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDL 264
R AY+ A+++ E L F G RR K
Sbjct: 78 GDRSRFMAYLGHLPGLKADLSTLENLHFLCGLHG------------RRAKQ--------- 116
Query: 265 DIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGP 324
M AL I+GL DTLV + +S GQKKRL L + P
Sbjct: 117 ---MPGSALA-------------IVGLAGYEDTLV-----RQLSAGQKKRLALARLWLSP 155
Query: 325 ARVLFMDEISNGLD 338
A + +DE LD
Sbjct: 156 APLWLLDEPYANLD 169
|
Length = 214 |
| >gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.1 bits (122), Expect = 1e-06
Identities = 58/227 (25%), Positives = 89/227 (39%), Gaps = 57/227 (25%)
Query: 830 VELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGII----- 884
+E++ D +L NV +TAL+G SG GK+T + L + +I
Sbjct: 4 IEVENLNTYFDDAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTL--NRMNDLIPGFRH 61
Query: 885 EGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLE-----SLLFSAWLRLPSEI---- 935
EG IY+ G DI+ P + V+E ++F P I
Sbjct: 62 EGHIYLDG-----------------VDIYDPAVDVVELRKKVGMVFQKPNPFPKSIFDNV 104
Query: 936 ------ELETQRAFVEEVMELVELTSLSGALIG-------LPGINGLSTEQRKRLTIAVE 982
E F+EE +E SL A + GLS Q++RL IA
Sbjct: 105 AYGLRIHGEDDEDFIEERVE----ESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIART 160
Query: 983 LVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGR---TIVCTIH 1026
+ +P ++ MDEP S LD I + ++++ + TIV H
Sbjct: 161 IAVSPEVILMDEPCSALD----PISTTKIEDLIHKLKEDYTIVIVTH 203
|
Length = 250 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 1e-06
Identities = 55/191 (28%), Positives = 90/191 (47%), Gaps = 38/191 (19%)
Query: 845 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGI-----IEGDIYISG---YPKR 896
L +V+ F P +TAL+G SG+GK+TL+ + + + I G I +G Y R
Sbjct: 21 LNSVSLDFYPNEITALIGPSGSGKSTLLRSI--NRMNDLNPEVTITGSIVYNGHNIYSPR 78
Query: 897 QET--FARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELT 954
+T + G Q P +++ E++++ LRL + + ++E +E
Sbjct: 79 TDTVDLRKEIGMVFQQPNPFP-MSIYENVVYG--LRLKGIKD----KQVLDEAVE----K 127
Query: 955 SLSGALI-----------GLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARA 1003
SL GA I L GLS Q++R+ IA L +P I+ +DEPTS LD +
Sbjct: 128 SLKGASIWDEVKDRLHDSAL----GLSGGQQQRVCIARVLATSPKIILLDEPTSALDPIS 183
Query: 1004 AAIVMRTVRNI 1014
A + T+ +
Sbjct: 184 AGKIEETLLGL 194
|
Length = 252 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.7 bits (121), Expect = 1e-06
Identities = 55/205 (26%), Positives = 91/205 (44%), Gaps = 35/205 (17%)
Query: 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDV---LAGRKTGGIIEGDIYISGYP----- 894
++L V +TAL+G SG+GK+TL+ V L + G++Y+ G
Sbjct: 17 EVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMD 76
Query: 895 -----KRQETFARISGYCEQNDIHSPGLTVLESLLFSAWL-RL-PSEIELETQRAFVEEV 947
+R + +I N I P L++ E++ L RL S+ EL+ + V
Sbjct: 77 VIELRRRVQMVFQIP-----NPI--PNLSIFENVALGLKLNRLVKSKKELQER---VRWA 126
Query: 948 MELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLD----ARA 1003
+E +L + P LS Q++RL IA L P ++ DEPT+ LD A+
Sbjct: 127 LEKAQLWDEVKDRLDAPA-GKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKI 185
Query: 1004 AAIVMRTVRNIVNTGRTIVCTIHQP 1028
++ + +++ TIV H P
Sbjct: 186 ESLFLELKKDM-----TIVLVTHFP 205
|
Length = 250 |
| >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 1e-06
Identities = 51/196 (26%), Positives = 76/196 (38%), Gaps = 62/196 (31%)
Query: 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLM-------DVLAGRKTGGIIEGDIYISGYPK 895
L ++T + +TAL+G SG GK+TL+ D++ G + I GDI +G
Sbjct: 20 HALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCR----ITGDILYNG--- 72
Query: 896 RQETFARISGYCEQNDIHSPGLTVLE-----SLLFSAWLRLPSEI----------ELETQ 940
+I G V+ ++F P I E
Sbjct: 73 --------------ENIMDSGADVVALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKN 118
Query: 941 RAFVEEVMELVELTSLSGALI-----------GLPGINGLSTEQRKRLTIAVELVANPSI 989
+ ++ ++E SL GA + L LS Q++RL IA L NP +
Sbjct: 119 KKTLDTIVE----KSLKGAALWDEVKDRLHDSAL----SLSGGQQQRLCIARTLAVNPEV 170
Query: 990 VFMDEPTSGLDARAAA 1005
+ MDEP S LD A A
Sbjct: 171 ILMDEPCSALDPIATA 186
|
Length = 253 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 1e-06
Identities = 58/220 (26%), Positives = 95/220 (43%), Gaps = 27/220 (12%)
Query: 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFAR 902
Q + +V+ +PG A+VG +GAGK+TL+++L ++ G I I G R T A
Sbjct: 349 QGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLL--QRVFDPQSGRILIDGTDIRTVTRAS 406
Query: 903 ISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVE--------LT 954
+ + + ++ LF+ + I + A EE+ E
Sbjct: 407 LR--------RNIAVVFQDAGLFNRSIE--DNIRVGRPDATDEEMRAAAERAQAHDFIER 456
Query: 955 SLSG--ALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVR 1012
G ++G G LS +R+RL IA L+ +P I+ +DE TS LD A V +
Sbjct: 457 KPDGYDTVVGERG-RQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALD 515
Query: 1013 NIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAG 1052
+ GRT H+ S + D +L G ++ +G
Sbjct: 516 E-LMKGRTTFIIAHRLS--TVRNADRILVFDN-GRVVESG 551
|
Length = 588 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 48.9 bits (118), Expect = 2e-06
Identities = 29/88 (32%), Positives = 41/88 (46%), Gaps = 5/88 (5%)
Query: 147 KLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV 206
K T LDD+S + + LLGP +GKTTL+ + G L SG+I G K+
Sbjct: 12 KKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLL---KPDSGEIKVLGKDIKKEP 68
Query: 207 P--PRTSAYVSQQDWQVAEMTVRETLDF 232
R Y+ ++ +TVRE L
Sbjct: 69 EEVKRRIGYLPEEPSLYENLTVRENLKL 96
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 49.9 bits (120), Expect = 2e-06
Identities = 57/243 (23%), Positives = 100/243 (41%), Gaps = 45/243 (18%)
Query: 151 LDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPP-- 208
LD++S IR ++G SGK+TLL LAG SG + +G ++ P
Sbjct: 20 LDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLY---KPTSGSVLLDGTDIRQLDPADL 76
Query: 209 -RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIF 267
R YV Q T+R+ + G D + R ++AG+ F
Sbjct: 77 RRNIGYVPQDVTLFYG-TLRDNITL-----GAPLADD--ERILRAAELAGVTD------F 122
Query: 268 MKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARV 327
+ G D +G E +G+SGGQ++ + L+ +
Sbjct: 123 VNKHPNG--------------------LDLQIG-ERGRGLSGGQRQAVALARALLNDPPI 161
Query: 328 LFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIV 387
L +DE ++ +D ++ ++ + L+ D T +I +P+ +L D +I++ G+IV
Sbjct: 162 LLLDEPTSAMDMNSEERLKERLRQLLG--DKTLIIITHRPS--LLDLVDRIIVMDSGRIV 217
Query: 388 YQG 390
G
Sbjct: 218 ADG 220
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 2e-06
Identities = 61/253 (24%), Positives = 101/253 (39%), Gaps = 43/253 (16%)
Query: 153 DLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITY--NGHGFKEF--VPP 208
D+S + P + ++G SGK+TLL LAGRL G TY E +
Sbjct: 21 DVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRL---APDHGTATYIMRSGAELELYQLSE 77
Query: 209 RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFM 268
+ + +W R+ L R AG E L
Sbjct: 78 AERRRLMRTEWGFVHQNPRDGL--------------------RMRVSAGANIGERL---- 113
Query: 269 KSFALG----GQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGP 324
A+G G + +++ ++ + + D++ + SGG ++RL LV
Sbjct: 114 --MAIGARHYGNIRATAQDWLEEV---EIDPTRI--DDLPRAFSGGMQQRLQIARNLVTR 166
Query: 325 ARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEG 384
R++FMDE + GLD S +++ L+ R L G VI + A L ++++ +G
Sbjct: 167 PRLVFMDEPTGGLDVSVQARLLDLLRGLVRDL-GLAVIIVTHDLGVARLLAQRLLVMQQG 225
Query: 385 QIVYQGPRVSVLD 397
++V G VLD
Sbjct: 226 RVVESGLTDQVLD 238
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 2e-06
Identities = 54/244 (22%), Positives = 93/244 (38%), Gaps = 47/244 (19%)
Query: 158 IRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP-PRTSAYVSQ 216
+ + +LGP +GK+TLL +AG SG+I NG P R + + Q
Sbjct: 22 VPAGEIVAILGPSGAGKSTLLNLIAGFE---TPASGEILINGVDHTASPPAERPVSMLFQ 78
Query: 217 QDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQ 276
++ A +TV + + G+ P L+ A +
Sbjct: 79 ENNLFAHLTVAQNIGL------------------------GLSPGLKLN------AEQRE 108
Query: 277 KTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNG 336
K VE +GL L G+ +SGGQ++R+ LV +L +DE +
Sbjct: 109 K----VEAAAAQVGLAGFLKRLPGE-----LSGGQRQRVALARCLVREQPILLLDEPFSA 159
Query: 337 LDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVL 396
LD + +++ + T ++ P +A + D V+ L G+I QG
Sbjct: 160 LDPALRAEMLALVSQLCDERKMTLLMVTHHPE-DAARIADRVVFLDNGRIAAQGS---TQ 215
Query: 397 DFFA 400
+ +
Sbjct: 216 ELLS 219
|
Length = 231 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 51.4 bits (123), Expect = 2e-06
Identities = 60/259 (23%), Positives = 101/259 (38%), Gaps = 59/259 (22%)
Query: 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPP 208
T+LD + +R L L+GP +GKTTLL A+ G L +G + G + V
Sbjct: 17 TVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLT---PTAGTVLVAG----DDVEA 69
Query: 209 RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELAR---REKIAGIKPDEDLD 265
++ S++ V + T + +F + + E+ R R + +
Sbjct: 70 LSARAASRRVASVPQDTSL-SFEFDVR---------QVVEMGRTPHRSRFDTWTETDRA- 118
Query: 266 IFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPA 325
VE M+ G+ AD V +SGG+++R+ L
Sbjct: 119 ---------------AVERAMERTGVAQFADRPVTS-----LSGGERQRVLLARALAQAT 158
Query: 326 RVLFMDEISNGLDSSTTYQIIKYLKHSTRAL--------DGTTVISLLQPAPEAYELFDD 377
VL +DE + LD + H R L DG T ++ + A D+
Sbjct: 159 PVLLLDEPTASLD----------INHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDE 208
Query: 378 VILLSEGQIVYQGPRVSVL 396
++LL++G++ GP VL
Sbjct: 209 LVLLADGRVRAAGPPADVL 227
|
Length = 402 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 51.0 bits (122), Expect = 2e-06
Identities = 35/122 (28%), Positives = 58/122 (47%), Gaps = 9/122 (7%)
Query: 307 ISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQ 366
+SGGQK+R+ L +VL DE ++ LD +TT I++ LK R L G T++ +
Sbjct: 141 LSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRL-GLTILLITH 199
Query: 367 PAPEAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVTSKKDQE 426
+ D V ++S G+++ QG +V + F+ PK F++ E
Sbjct: 200 EMDVVKRICDCVAVISNGELIEQG---TVSEIFSH-----PKTPLAQKFIRSTLHLSIPE 251
Query: 427 QY 428
Y
Sbjct: 252 DY 253
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 2e-06
Identities = 55/212 (25%), Positives = 93/212 (43%), Gaps = 33/212 (15%)
Query: 854 PGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISG-------------YPKRQETF 900
G AL+G SG+GK+T++ +L + I EG I + G P ++
Sbjct: 25 AGEKVALIGPSGSGKSTILRILMTLE--PIDEGQIQVEGEQLYHMPGRNGPLVPADEKHL 82
Query: 901 ARIS---GYCEQNDIHSPGLTVLESLLFSAWLRL---PSEIELETQRAFVEEVMELVELT 954
++ G Q+ P TVL+++ + L L +E E +RA MEL+++
Sbjct: 83 RQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAE---KRA-----MELLDMV 134
Query: 955 SLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNI 1014
L+ +P LS Q++R+ IA L P ++ DE TS LD V+ +R +
Sbjct: 135 GLADKADHMPA--QLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRL 192
Query: 1015 VN-TGRTIVCTIHQPSIDIFESFDELLFMKRG 1045
+ T++ H+ E D + F +G
Sbjct: 193 ASEHDLTMLLVTHEMGF-AREFADRVCFFDKG 223
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 2e-06
Identities = 58/243 (23%), Positives = 91/243 (37%), Gaps = 56/243 (23%)
Query: 161 SRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGH-----GFKEFVPP--RTSAY 213
+T L GP SGKT+L+ +AG G+I NG F+PP R Y
Sbjct: 24 RGITALFGPSGSGKTSLINMIAGLT--RPDE-GRIELNGRVLVDAEKGIFLPPEKRRIGY 80
Query: 214 VSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFAL 273
V Q TVR L + G + + +++D + L GI+
Sbjct: 81 VFQDARLFPHYTVRGNLRY-GMWKSMRAQFDQLVALL------GIEH------------- 120
Query: 274 GGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEI 333
L+ Y + SGG+K+R+ G L+ +L MDE
Sbjct: 121 ------LLDRYPGTL-------------------SGGEKQRVAIGRALLTAPELLLMDEP 155
Query: 334 SNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQGPRV 393
LD +I+ YL+ ++ ++ + E L D V++L G++ GP
Sbjct: 156 LASLDLPRKREILPYLERLRDEIN-IPILYVSHSLDEVLRLADRVVVLENGKVKASGPLE 214
Query: 394 SVL 396
V
Sbjct: 215 EVW 217
|
Length = 352 |
| >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.8 bits (121), Expect = 2e-06
Identities = 57/207 (27%), Positives = 87/207 (42%), Gaps = 19/207 (9%)
Query: 845 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG---RKTGGIIEGDIYISGYPKRQETFA 901
L N+ + G ++G +G+GK+TL L G + G ++ I + K Q
Sbjct: 18 LENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQG-IR 76
Query: 902 RISGYCEQN-DIHSPGLTVLESLLFSAW-LRLP-SEIELETQRAFVEEVMELVELTSLSG 958
++ G QN + G TV E L F L LP EI RA E +E S
Sbjct: 77 KLVGIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRS--- 133
Query: 959 ALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTG 1018
P LS Q + + +A L P + DE TS LD + V+ ++ + G
Sbjct: 134 -----P--KTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKG 186
Query: 1019 RTIVCTIHQPSIDIFESFDELLFMKRG 1045
+TIV H +++ D ++ M RG
Sbjct: 187 KTIVYITH--NLEELHDADRIIVMDRG 211
|
Length = 274 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 48.5 bits (117), Expect = 3e-06
Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 9/83 (10%)
Query: 150 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQV-SGKITYNGHGFKEFVP- 207
+L D+S I+P ++GP SGK+TLL L SG+I +G ++
Sbjct: 17 VLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLR----LYDPTSGEILIDGVDLRDLDLE 72
Query: 208 --PRTSAYVSQQDWQVAEMTVRE 228
+ AYV Q + + T+RE
Sbjct: 73 SLRKNIAYVPQDPF-LFSGTIRE 94
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 3e-06
Identities = 48/198 (24%), Positives = 84/198 (42%), Gaps = 45/198 (22%)
Query: 150 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP-- 207
IL ++ ++ + ++GP SGK+TL +AG + + SG I + G E P
Sbjct: 15 ILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEV-TSGTILFKGQDLLELEPDE 73
Query: 208 -PRTSAYVS-QQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLD 265
R +++ Q ++ ++ E L A ARR A + DL
Sbjct: 74 RARAGLFLAFQYPEEIPGVSNLEFLRSALN--------------ARRS--ARGEEPLDLL 117
Query: 266 IFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLK-----GISGGQKKRLTTGEL 320
F+K +++ + +LG+D +E L G SGG+KKR ++
Sbjct: 118 DFLK-----------LLKAKLALLGMD--------EEFLNRSVNEGFSGGEKKRNEILQM 158
Query: 321 LVGPARVLFMDEISNGLD 338
+ ++ +DEI +GLD
Sbjct: 159 ALLEPKLAILDEIDSGLD 176
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 50.2 bits (120), Expect = 3e-06
Identities = 63/257 (24%), Positives = 93/257 (36%), Gaps = 56/257 (21%)
Query: 166 LLGPPSSGKTTLLLALAGRLGHHLQVS-GKITYNGHGFKEFVPP--RTSAYVSQQDWQVA 222
LLGP GKTTLL LAG Q G I +G VPP R V Q
Sbjct: 1 LLGPSGCGKTTLLRLLAG----FEQPDSGSIMLDGEDVTN-VPPHLRHINMVFQSYALFP 55
Query: 223 EMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVV 282
MTV E + F + + V R +I
Sbjct: 56 HMTVEENVAFGLKMRKVP-----------RAEIK-------------------------- 78
Query: 283 EYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTT 342
+++ L L + D +SGGQ++R+ LV ++L +DE + LD
Sbjct: 79 PRVLEALRLVQLEE--FADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLR 136
Query: 343 YQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVLDFFASM 402
Q+ LK L G T + + EA + D + ++ +G+I G +
Sbjct: 137 DQMQLELKTIQEQL-GITFVFVTHDQEEAMTMSDRIAIMRKGKIAQIGTPEEI------- 188
Query: 403 GFSCPKRKNVADFLQEV 419
+ P VA F+ E+
Sbjct: 189 -YEEPANLFVARFIGEI 204
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 3e-06
Identities = 63/252 (25%), Positives = 106/252 (42%), Gaps = 51/252 (20%)
Query: 144 NRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQV--SGKITYNGHG 201
NR + +L L+ + P + L+GP SGK+T+ L +L G++ +G
Sbjct: 490 NRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALL-----QNLYQPTGGQVLLDGVP 544
Query: 202 FKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIA-GIKP 260
++ Y+ +Q V + E + F+G RE IA G+
Sbjct: 545 LVQY----DHHYLHRQVALVGQ----EPVLFSGSV---------------RENIAYGLTD 581
Query: 261 DEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKG--ISGGQKKRLTTG 318
D +I + K + ++IM DT VG+ KG +SGGQK+R+
Sbjct: 582 TPDEEI------MAAAKAANAHDFIM---EFPNGYDTEVGE---KGSQLSGGQKQRIAIA 629
Query: 319 ELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDV 378
LV RVL +DE ++ LD+ + L +R+ TV+ + E D +
Sbjct: 630 RALVRKPRVLILDEATSALDAE-----CEQLLQESRSRASRTVLLIAHRLSTV-ERADQI 683
Query: 379 ILLSEGQIVYQG 390
++L +G +V G
Sbjct: 684 LVLKKGSVVEMG 695
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 3e-06
Identities = 56/213 (26%), Positives = 96/213 (45%), Gaps = 34/213 (15%)
Query: 855 GVLTALVGVSGAGKTTLMDVLAGRKTGGIIE---GDIYISGY-------PKRQETFARIS 904
G + ++G+SG+GK+T + +L +IE G I+I G + +E +
Sbjct: 19 GEIFVIMGLSGSGKSTTVRML-----NRLIEPTAGQIFIDGENIMKQSPVELREVRRKKI 73
Query: 905 GYCEQNDIHSPGLTVLESLLFSAWL-RLPSEIELETQRAFVEEVMELVELTSLSGALIGL 963
G Q P +T+L++ L P + +R E+ +EL++L L
Sbjct: 74 GMVFQQFALFPHMTILQNTSLGPELLGWPEQ-----ERK--EKALELLKLVGLEEYEHRY 126
Query: 964 PGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNT-GRTIV 1022
P + LS ++R+ +A L A P I+ MDE S LD + ++ + T +TIV
Sbjct: 127 P--DELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKTIV 184
Query: 1023 CTIHQPSIDIFESF---DELLFMKRGGELIYAG 1052
H D+ E+ D ++ MK GE++ G
Sbjct: 185 FITH----DLDEAIRIGDRIVIMK-AGEIVQVG 212
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 3e-06
Identities = 49/192 (25%), Positives = 76/192 (39%), Gaps = 64/192 (33%)
Query: 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLM-------DVLAGRKTGGIIEGDIYISGYPK 895
Q L + +TAL+G SG GK+T + D++ K IEG++ + G
Sbjct: 17 QALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVK----IEGEVLLDG--- 69
Query: 896 RQETFARISGYCEQNDIHSPGLTVLE-----SLLFSAWLRLPSEIE-----------LET 939
DI+ + V + ++F P I ++
Sbjct: 70 --------------QDIYKSDIDVNQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKD 115
Query: 940 QRAFVEEVMELVELTSLSGALI-----------GLPGINGLSTEQRKRLTIAVELVANPS 988
++ ++ E+VE SL GA + L GLS Q++RL IA L P
Sbjct: 116 KK----KLDEIVE-KSLKGAALWDEVKDRLKKSAL----GLSGGQQQRLCIARALAVEPE 166
Query: 989 IVFMDEPTSGLD 1000
++ MDEPTS LD
Sbjct: 167 VLLMDEPTSALD 178
|
Length = 250 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 47.8 bits (115), Expect = 4e-06
Identities = 29/94 (30%), Positives = 51/94 (54%), Gaps = 9/94 (9%)
Query: 296 DTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRA 355
+ L E LK +SGG K+RL + L+ +L +DE ++GLD + + + L+ +
Sbjct: 86 ENLTVRENLK-LSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKK- 143
Query: 356 LDGTTVI---SLLQPAPEAYELFDDVILLSEGQI 386
+G T++ +L+ EA L D V +L+ G+I
Sbjct: 144 -EGKTILLSSHILE---EAERLCDRVAILNNGRI 173
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.1 bits (120), Expect = 4e-06
Identities = 50/178 (28%), Positives = 85/178 (47%), Gaps = 11/178 (6%)
Query: 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG---RKTGGIIEGDIYISGYPKR 896
R Q+L +++ G + AL+G SG+GKTTL+ ++AG + +G I +S R
Sbjct: 13 GRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHAR 72
Query: 897 QETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSL 956
R G+ Q+ +TV +++ F L + E A +V +L+E+ L
Sbjct: 73 D----RKVGFVFQHYALFRHMTVFDNIAFG--LTVLPRRERPNAAAIKAKVTQLLEMVQL 126
Query: 957 SGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNI 1014
+ P LS Q++R+ +A L P I+ +DEP LDA+ + R +R +
Sbjct: 127 AHLADRYPA--QLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQL 182
|
Length = 353 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.2 bits (117), Expect = 4e-06
Identities = 51/198 (25%), Positives = 87/198 (43%), Gaps = 34/198 (17%)
Query: 151 LDDLSGIIRPSRLTLLLGPPSSGKTTLLLAL--AGRLGHHLQVSGKITYNGHGFKEFVPP 208
L+D++ I +++T L+GP GK+T L L L ++++ G++ +G
Sbjct: 20 LNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKN------- 72
Query: 209 RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFM 268
+ +D V E+ R + F S YD + A +I GIK ++LD
Sbjct: 73 -----IYDKDVDVVELRKRVGMVFQKPNPFPMSIYDNV---AYGPRIHGIKDKKELD--- 121
Query: 269 KSFALGGQKTSLVVEYIMKILGL-DTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARV 327
+VE+ +K L D D L + +SGGQ++RL + V
Sbjct: 122 -----------KIVEWALKKAALWDEVKDDLKKSAL--KLSGGQQQRLCIARTIAVKPDV 168
Query: 328 LFMDEISNGLDSSTTYQI 345
+ MDE ++ LD +T +I
Sbjct: 169 ILMDEPTSALDPISTLKI 186
|
Length = 251 |
| >gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 4e-06
Identities = 48/170 (28%), Positives = 78/170 (45%), Gaps = 27/170 (15%)
Query: 847 NVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKT---GGIIEGDIYISG---YPKRQETF 900
+V P +TA +G SG GK+T++ L G +EG++ + G Y +
Sbjct: 22 DVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPV 81
Query: 901 A--RISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSG 958
A R G Q P +++ ++++ A L+L + ++E++E SL G
Sbjct: 82 AVRRTIGMVFQRPNPFPTMSIRDNVV--AGLKLNG----VRNKKDLDELVE----KSLRG 131
Query: 959 A--------LIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLD 1000
A + PG GLS Q++RL IA + P ++ MDEP S LD
Sbjct: 132 ANLWNEVKDRLDKPGG-GLSGGQQQRLCIARAIAVEPDVLLMDEPCSALD 180
|
Length = 258 |
| >gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 49.5 bits (118), Expect = 4e-06
Identities = 56/218 (25%), Positives = 88/218 (40%), Gaps = 28/218 (12%)
Query: 845 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFA 901
L ++G R G + LVG +GAGK+TL+ +AG +G G I +G P A
Sbjct: 15 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG---SGSIQFAGQPLEAWSATELA 71
Query: 902 RISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALI 961
R Y Q +P W L +T+ + +V + L G
Sbjct: 72 RHRAYLSQQ--QTP------PFAMPVWHYLTLHQPDKTRTELLNDVAGALALDDKLGRS- 122
Query: 962 GLPGINGLSTE--QRKRLT---IAVELVANPS--IVFMDEPTSGLDARAAAIVMRTVRNI 1014
N LS QR RL + + ANP+ ++ +DEP + LD + + R + +
Sbjct: 123 ----TNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSAL 178
Query: 1015 VNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAG 1052
G IV + H + +KR G+L+ +G
Sbjct: 179 CQQGLAIVMSSHDLN-HTLRHAHRAWLLKR-GKLLASG 214
|
Length = 248 |
| >gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 4e-06
Identities = 59/277 (21%), Positives = 104/277 (37%), Gaps = 54/277 (19%)
Query: 766 VVSKKELQERDRRRKGENVVIELREYLQRSSSLNGKYFKQKGMVLPFQPLSMAFGNINYF 825
++ L R R E +E + + KG+ FQ + +FG
Sbjct: 336 PMAYPHLLLAPRYRMVEK--LEGPIKFKNVTKTFASELDIKGLPNEFQDILESFGVRQRV 393
Query: 826 VDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIE 885
+ E + L L + PG + A+VG SGAGKTTL+ ++ G
Sbjct: 394 I--------ERYVLRNLNLEIK------PGDVVAVVGQSGAGKTTLLRMILG-------- 431
Query: 886 GDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELE-TQRAFV 944
+ G + + P +E + +P E E E + +
Sbjct: 432 --------------AQKGRG----EEKYRPDSGKVEVPKNTVSALIPGEYEPEFGEVTIL 473
Query: 945 EEV----------MELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDE 994
E + +E++ LS A++ + LST Q++R +A L P+++ +DE
Sbjct: 474 EHLRSKTGDLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDE 533
Query: 995 PTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSI 1030
+ LD A V R + + G T++ H+P +
Sbjct: 534 FAAHLDELTAVRVARKISELAREAGITLIVVTHRPEV 570
|
Length = 593 |
| >gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C | Back alignment and domain information |
|---|
Score = 48.5 bits (115), Expect = 4e-06
Identities = 62/251 (24%), Positives = 103/251 (41%), Gaps = 57/251 (22%)
Query: 146 SKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEF 205
S L L +++ I +LT+++G GK++LLLA+ LG + GK+ ++ E
Sbjct: 12 SGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAI---LGEMQTLEGKVHWSNKNESEP 68
Query: 206 VPPRTS-------AYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGI 258
T AY +Q+ W + TV E + F +Y +T+ +
Sbjct: 69 SFEATRSRNRYSVAYAAQKPW-LLNATVEENITFGSPFN--KQRYKAVTD------ACSL 119
Query: 259 KPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTG 318
+PD DL G Q T +G+ + +SGGQ++R+
Sbjct: 120 QPDIDL------LPFGDQ--------------------TEIGERGIN-LSGGQRQRICVA 152
Query: 319 ELLVGPARVLFMDEISNGLD---SSTTYQ--IIKYLKHSTRALDGTTVISLLQPAPEAYE 373
L ++F+D+ + LD S Q I+K+L+ R L V LQ P A
Sbjct: 153 RALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTL--VLVTHKLQYLPHA-- 208
Query: 374 LFDDVILLSEG 384
D +I + +G
Sbjct: 209 --DWIIAMKDG 217
|
The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218 |
| >gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 5e-06
Identities = 56/198 (28%), Positives = 80/198 (40%), Gaps = 61/198 (30%)
Query: 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLM-------DVLAGRKTGGIIEGDIYISGYPK 895
Q L +V +TA +G SG GK+T + D + G + + G I + G
Sbjct: 33 QALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCR----VTGKITLDG--- 85
Query: 896 RQETFARISGYCEQNDIHSPGLTVLE-----SLLFSAWLRLPSEI-----------ELET 939
DI+ P L V+E ++F P I L
Sbjct: 86 --------------EDIYDPRLDVVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLAR 131
Query: 940 QRAFVEEVMELVELTSLSGALIGL----------PGINGLSTEQRKRLTIAVELVANPSI 989
+A ++E++E TSL A GL PG GLS Q++RL IA + +P +
Sbjct: 132 SKAELDEIVE----TSLRKA--GLWEEVKDRLHEPG-TGLSGGQQQRLCIARAIAVSPEV 184
Query: 990 VFMDEPTSGLDARAAAIV 1007
+ MDEP S LD A A V
Sbjct: 185 ILMDEPCSALDPIATAKV 202
|
Length = 267 |
| >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.9 bits (116), Expect = 5e-06
Identities = 48/186 (25%), Positives = 82/186 (44%), Gaps = 25/186 (13%)
Query: 830 VELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVL--------AGRKTG 881
V+L+Q V + + +V+ F +TA++G SG GK+T++ + + R TG
Sbjct: 5 VKLEQLNVHFGKNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTG 64
Query: 882 GII--EGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELET 939
I+ + DIY G + R G Q P +++ ++++ A +L +
Sbjct: 65 KILLDDTDIYDRGVDP--VSIRRRVGMVFQKPNPFPAMSIYDNVI--AGYKLNGRVNRSE 120
Query: 940 QRAFVEEVMELVEL-----TSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDE 994
VE ++ V L L + L G Q++RL IA + P ++ MDE
Sbjct: 121 ADEIVESSLKRVALWDEVKDRLKSNAMELSG------GQQQRLCIARTIAVKPEVILMDE 174
Query: 995 PTSGLD 1000
P S LD
Sbjct: 175 PASALD 180
|
Length = 252 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 6e-06
Identities = 57/247 (23%), Positives = 92/247 (37%), Gaps = 43/247 (17%)
Query: 146 SKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEF 205
+ L + + + +LG SGK+TLL LAG G IT NG
Sbjct: 349 QQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAW---DPQQGSITLNGVEIASL 405
Query: 206 VPP--RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDED 263
R + V Q + T+R+ L A A E++
Sbjct: 406 DEQALRETISVLTQRVHLFSGTLRDNLRLANPD-------------ASDEELWAALQQVG 452
Query: 264 LDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVG 323
L+ ++S A G T L E + +SGG+++RL L+
Sbjct: 453 LEKLLES-APDGLNTWL--------------------GEGGRRLSGGERRRLALARALLH 491
Query: 324 PARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSE 383
A + +DE + GLD T Q++ L +G T++ + E D +I+L
Sbjct: 492 DAPLWLLDEPTEGLDPITERQVLALLFEH---AEGKTLLMVTHRLRGL-ERMDRIIVLDN 547
Query: 384 GQIVYQG 390
G+I+ +G
Sbjct: 548 GKIIEEG 554
|
Length = 573 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 6e-06
Identities = 47/191 (24%), Positives = 90/191 (47%), Gaps = 26/191 (13%)
Query: 847 NVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARI--S 904
+V+ + R G + + G+ GAG+T L+ L G G EG+++I+G P A+ +
Sbjct: 278 DVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKF-EGNVFINGKPVDIRNPAQAIRA 336
Query: 905 GYC------EQNDI-------HSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELV 951
G +++ I + L+VL+S F +R+ + EL+ + ++ +
Sbjct: 337 GIAMVPEDRKRHGIVPILGVGKNITLSVLKS--FCFKMRIDAAAELQIIGSAIQRL---- 390
Query: 952 ELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTV 1011
+ A LP I LS +++ +A L+ NP ++ +DEPT G+D A + + +
Sbjct: 391 ---KVKTASPFLP-IGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLI 446
Query: 1012 RNIVNTGRTIV 1022
+ G I+
Sbjct: 447 NQLAQEGVAII 457
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 50.1 bits (120), Expect = 6e-06
Identities = 53/247 (21%), Positives = 97/247 (39%), Gaps = 38/247 (15%)
Query: 151 LDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRT 210
LD +S +I P L+G SGK+TL+ L R SG+I +GH ++
Sbjct: 348 LDSISLVIEPGETVALVGRSGSGKSTLV-NLIPRFYEP--DSGQILLDGHDLADYTLASL 404
Query: 211 SAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKS 270
V+ V + +T+ G + D A E+ + +
Sbjct: 405 RRQVALVSQDV--VLFNDTI-ANNIAYGRTEQADR----AEIERALA-------AAYAQD 450
Query: 271 FALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFM 330
F + L DT +G+ + +SGGQ++RL L+ A +L +
Sbjct: 451 F----------------VDKLPLGLDTPIGENGVL-LSGGQRQRLAIARALLKDAPILIL 493
Query: 331 DEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQG 390
DE ++ LD+ + + L+ + + L +A D ++++ +G+IV +G
Sbjct: 494 DEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTIEKA----DRIVVMDDGRIVERG 549
Query: 391 PRVSVLD 397
+L
Sbjct: 550 THNELLA 556
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 6e-06
Identities = 60/228 (26%), Positives = 95/228 (41%), Gaps = 53/228 (23%)
Query: 130 MTEALL--RQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLAL--AGRL 185
MTE +L L +Y K L+ +S P+ +T L+GP SGK+TLL ++ L
Sbjct: 1 MTEPILQVSDLSVYYN---KKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDL 57
Query: 186 GHHLQVSGKITYNGHGFKEFVPPRTS--------AYVSQQDWQVAEMTVRETLDFAGQCQ 237
+ ++G I YNGH PRT V QQ M++ E + +
Sbjct: 58 NPEVTITGSIVYNGH---NIYSPRTDTVDLRKEIGMVFQQP-NPFPMSIYENVVYG---- 109
Query: 238 GVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADT 297
++ GIK + LD ++ SL I D D
Sbjct: 110 ---------------LRLKGIKDKQVLDEAVEK--------SLKGASIW-----DEVKDR 141
Query: 298 LVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQI 345
L D L G+SGGQ++R+ +L +++ +DE ++ LD + +I
Sbjct: 142 L-HDSAL-GLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKI 187
|
Length = 252 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 48.7 bits (117), Expect = 6e-06
Identities = 43/147 (29%), Positives = 55/147 (37%), Gaps = 51/147 (34%)
Query: 859 ALVGVSGAGKTTLMDVLAGRKTGGIIE---GDIYISGYPKRQETFARISGYCEQNDIHSP 915
LVG SG GK+TL GR G+ E G+I G DI
Sbjct: 43 GLVGESGCGKSTL-----GRLILGLEEPTSGEILFEG-----------------KDIT-- 78
Query: 916 GLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIG-LPGINGLSTEQR 974
+L E E V+EL+E L + P + LS QR
Sbjct: 79 --------------KLSKEERRE-------RVLELLEKVGLPEEFLYRYP--HELSGGQR 115
Query: 975 KRLTIAVELVANPSIVFMDEPTSGLDA 1001
+R+ IA L NP ++ DEP S LD
Sbjct: 116 QRIGIARALALNPKLIVADEPVSALDV 142
|
Length = 268 |
| >gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C | Back alignment and domain information |
|---|
Score = 48.1 bits (114), Expect = 7e-06
Identities = 57/215 (26%), Positives = 94/215 (43%), Gaps = 22/215 (10%)
Query: 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFA 901
L L N+ G LT +VG G GK++L+ + G +EG ++ S + + +F
Sbjct: 14 LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQ--TLEGKVHWSNKNESEPSFE 71
Query: 902 RISG---YCEQNDIHSPGL---TVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTS 955
Y P L TV E++ F S + +A + ++
Sbjct: 72 ATRSRNRYSVAYAAQKPWLLNATVEENITFG------SPFNKQRYKAVTDACSLQPDIDL 125
Query: 956 L---SGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRT-- 1010
L IG GIN LS QR+R+ +A L N +IVF+D+P S LD + +M+
Sbjct: 126 LPFGDQTEIGERGIN-LSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGI 184
Query: 1011 VRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 1045
++ + + RT+V H+ + D ++ MK G
Sbjct: 185 LKFLQDDKRTLVLVTHK--LQYLPHADWIIAMKDG 217
|
The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218 |
| >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 7e-06
Identities = 51/197 (25%), Positives = 79/197 (40%), Gaps = 64/197 (32%)
Query: 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLM-------DVLAGRKTGGIIEGDIYISGYPK 895
Q L +++ F +TAL+G SG GK+T + D++ G + +EG+I + G
Sbjct: 20 QALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGAR----VEGEILLDG--- 72
Query: 896 RQETFARISGYCEQNDIHSPGLTVLE-----SLLFSAWLRLPSEIELET----------- 939
+I+ P + V+E ++F P I E
Sbjct: 73 --------------ENIYDPHVDVVELRRRVGMVFQKPNPFPKSI-FENVAYGLRVNGVK 117
Query: 940 QRAFVEEVMELVELTSLSGALI-----------GLPGINGLSTEQRKRLTIAVELVANPS 988
+A++ E +E SL A + L GLS Q++RL IA L P
Sbjct: 118 DKAYLAERVE----RSLRHAALWDEVKDRLHESAL----GLSGGQQQRLCIARALAVEPE 169
Query: 989 IVFMDEPTSGLDARAAA 1005
++ MDEP S LD A
Sbjct: 170 VLLMDEPASALDPIATQ 186
|
Length = 253 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 7e-06
Identities = 54/227 (23%), Positives = 99/227 (43%), Gaps = 17/227 (7%)
Query: 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYP------ 894
R +L NV+ + G L+G SG GK+TL +L G + +G + G
Sbjct: 23 RAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPA--QGTVSFRGQDLYQLDR 80
Query: 895 KRQETFARISGYCEQNDIHS--PGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVE 952
K++ F R Q+ + P +TV + + LR + ++ Q+A + E++++V
Sbjct: 81 KQRRAFRRDVQLVFQDSPSAVNPRMTVRQII--GEPLRHLTSLDESEQKARIAELLDMVG 138
Query: 953 LTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVR 1012
L S LP LS Q +R+ IA L P ++ +DE S LD A+++ +R
Sbjct: 139 LR--SEDADKLP--RQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLR 194
Query: 1013 NIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGSKSC 1059
+ T I + + +SF + + + G+++ +
Sbjct: 195 KLQQAFGTAYLFITH-DLRLVQSFCQRVAVMDKGQIVEECDVAQLLS 240
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.5 bits (115), Expect = 7e-06
Identities = 50/202 (24%), Positives = 83/202 (41%), Gaps = 31/202 (15%)
Query: 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLM-------DVLAGRKTGGIIEGDIYISG-- 892
L ++ + A +G SG GK+T + D++ + +EG+I I G
Sbjct: 16 FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATR----LEGEIRIDGRN 71
Query: 893 -YPK--RQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVME 949
Y K + + + G Q P ++ E++ + LR+ + R VEE ++
Sbjct: 72 IYDKGVQVDELRKNVGMVFQRPNPFPK-SIFENVAYG--LRVNGVKDNAFIRQRVEETLK 128
Query: 950 LVEL-----TSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAA 1004
L L + L G Q++RL IA + +PS++ MDEP S LD +
Sbjct: 129 GAALWDEVKDKLKESAFALSG------GQQQRLCIARAMAVSPSVLLMDEPASALDPIST 182
Query: 1005 AIVMRTVRNIVNTGRTIVCTIH 1026
A V + + TIV H
Sbjct: 183 AKVEELIHELKKD-YTIVIVTH 203
|
Length = 250 |
| >gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the sulfonylurea receptor SUR | Back alignment and domain information |
|---|
Score = 48.4 bits (115), Expect = 7e-06
Identities = 57/219 (26%), Positives = 94/219 (42%), Gaps = 41/219 (18%)
Query: 844 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARI 903
+L +V +PG + G +G+GK++L LA + I +G I I G
Sbjct: 36 VLKHVKAYIKPGQKVGICGRTGSGKSSLS--LAFFRMVDIFDGKIVIDGI---------- 83
Query: 904 SGYCEQNDIHSPGLTVLES---------LLFSAWLRLPSEIELETQRAFVEEVMELVELT 954
DI L L S +LFS +R + E + + E +E+ +L
Sbjct: 84 -------DISKLPLHTLRSRLSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLK 136
Query: 955 SLSGALIGLPGINGLSTE--------QRKRLTIAVELVANPSIVFMDEPTSGLDARAAAI 1006
++ +L G G++ + TE QR+ +A V SI+ MDE T+ +D I
Sbjct: 137 NMVKSLPG--GLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENI 194
Query: 1007 VMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 1045
+ + V RT+V H+ S I ++ D +L + RG
Sbjct: 195 LQKVVMTAF-ADRTVVTIAHRVS-TILDA-DLVLVLSRG 230
|
The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 257 |
| >gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 8e-06
Identities = 58/196 (29%), Positives = 93/196 (47%), Gaps = 25/196 (12%)
Query: 859 ALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFA--RISGYCEQNDIHSPG 916
ALVG +G+GK+TL +L G + EG+I + G P + + R Q D
Sbjct: 371 ALVGHTGSGKSTLASLLMGYYP--LTEGEIRLDGRPLSSLSHSVLRQGVAMVQQD----- 423
Query: 917 LTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGAL-------IGLPGINGL 969
V+ + F A + L +I E V + +E V+L L+ +L +G G N L
Sbjct: 424 -PVVLADTFLANVTLGRDISEEQ----VWQALETVQLAELARSLPDGLYTPLGEQG-NNL 477
Query: 970 STEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPS 1029
S Q++ L +A LV P I+ +DE T+ +D+ + + + V T+V H+ S
Sbjct: 478 SVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALA-AVREHTTLVVIAHRLS 536
Query: 1030 IDIFESFDELLFMKRG 1045
I E+ D +L + RG
Sbjct: 537 T-IVEA-DTILVLHRG 550
|
Length = 592 |
| >gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 9e-06
Identities = 21/59 (35%), Positives = 34/59 (57%)
Query: 969 LSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQ 1027
LS Q++R+ IA L P ++ DEPTS LD V++ ++++ GRT+V H+
Sbjct: 153 LSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHE 211
|
Length = 256 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 9e-06
Identities = 48/201 (23%), Positives = 85/201 (42%), Gaps = 18/201 (8%)
Query: 830 VELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDV---LAGRKTGGIIEG 886
+E K+ ++L +++ F G + +VG SGAGK+TL+ + L G I+
Sbjct: 4 IEFKEVSYSSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILID 63
Query: 887 DIYISGYPKRQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEE 946
+ I R G Q G TV +++ + L+ ++ VE
Sbjct: 64 GVDIKTIDVID--LRRKIGMVFQQPHLFEG-TVKDNIEYGPMLKGEKNVD-------VEY 113
Query: 947 VMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAI 1006
+ +V L + LS + +R++IA L NP ++ +DEPTS LD + I
Sbjct: 114 YLSIVGLNKE----YATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEI 169
Query: 1007 VMRTVRNIVNT-GRTIVCTIH 1026
+ + + N T++ H
Sbjct: 170 IEELIVKLKNKMNLTVIWITH 190
|
Length = 241 |
| >gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 9e-06
Identities = 59/218 (27%), Positives = 94/218 (43%), Gaps = 41/218 (18%)
Query: 845 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIE---GDIYISGYPKRQETFA 901
L +V+ + G +++G +G+GK+T + R G++E G I I G +E
Sbjct: 23 LNDVSFHVKQGEWLSIIGHNGSGKSTTV-----RLIDGLLEAESGQIIIDGDLLTEENVW 77
Query: 902 RIS---GYCEQN-DIHSPGLTVLESLLFSAWLRLPSE-IELETQRAFVEEVMELV----- 951
I G QN D G TV + + F L ++ I E + V E +ELV
Sbjct: 78 DIRHKIGMVFQNPDNQFVGATVEDDVAFG----LENKGIPHEEMKERVNEALELVGMQDF 133
Query: 952 ---ELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVM 1008
E LSG Q++R+ IA + P I+ +DE TS LD ++
Sbjct: 134 KEREPARLSGG-------------QKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELI 180
Query: 1009 RTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRG 1045
+T++ I + T++ H +D D +L MK G
Sbjct: 181 KTIKGIRDDYQMTVISITH--DLDEVALSDRVLVMKNG 216
|
Length = 279 |
| >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 9e-06
Identities = 53/175 (30%), Positives = 87/175 (49%), Gaps = 31/175 (17%)
Query: 830 VELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIY 889
V L+ V + ++L +V+ +PG + L+G +GAGK+TL+ V+ G++ D
Sbjct: 5 VSLENVSVSFGQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVL-----GLVAPD-- 57
Query: 890 ISGYPKRQETFARISGYCEQN---DIHSPGLTVLESLLFSAWLRL-PSEIELETQRAFVE 945
G KR RI GY Q D P LTV + +LRL P T++ +
Sbjct: 58 -EGVIKRNGKL-RI-GYVPQKLYLDTTLP-LTV------NRFLRLRPG-----TKKEDIL 102
Query: 946 EVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLD 1000
++ V+ +G LI P + LS + +R+ +A L+ P ++ +DEPT G+D
Sbjct: 103 PALKRVQ----AGHLIDAP-MQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVD 152
|
Length = 251 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 48.3 bits (116), Expect = 1e-05
Identities = 26/96 (27%), Positives = 42/96 (43%), Gaps = 13/96 (13%)
Query: 308 SGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVI----- 362
SGG ++R+ L ++L DE + LD + QI+ LK R GT +I
Sbjct: 155 SGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREK-GTALILITHD 213
Query: 363 -SLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVLD 397
+ E+ D V ++ G+IV +GP +
Sbjct: 214 LGV------VAEIADRVAVMYAGRIVEEGPVEEIFK 243
|
Length = 316 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 1e-05
Identities = 51/207 (24%), Positives = 79/207 (38%), Gaps = 60/207 (28%)
Query: 147 KLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV 206
+L DLS I ++GP +GK+TLL LAG LG SG + G K
Sbjct: 334 GRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPL---SGTVKV-GETVK--- 386
Query: 207 PPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDI 266
Y Q R+ LD + + ++E PD D +
Sbjct: 387 ----IGYFDQH---------RDELD------PDKTVLEELSEGF---------PDGD-EQ 417
Query: 267 FMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGI---SGGQKKRLTTGELLVG 323
++++ LG G G++ K + SGG+K RL +LL+
Sbjct: 418 EVRAY-LGR-------------FGFT-------GEDQEKPVGVLSGGEKARLLLAKLLLQ 456
Query: 324 PARVLFMDEISNGLDSSTTYQIIKYLK 350
P +L +DE +N LD + + + L
Sbjct: 457 PPNLLLLDEPTNHLDIESLEALEEALL 483
|
Length = 530 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 1e-05
Identities = 70/288 (24%), Positives = 120/288 (41%), Gaps = 56/288 (19%)
Query: 136 RQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHL---QVS 192
L ++ G + L +++ I +++T L+GP GK+TLL +L R+ + ++
Sbjct: 5 ENLNLFYGEK---EALKNINLDIPKNQVTALIGPSGCGKSTLLRSL-NRMNDLVPGVRIE 60
Query: 193 GKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARR 252
GK+ ++G + + V E+ R + F S YD I A
Sbjct: 61 GKVLFDGQD------------IYDKKIDVVELRRRVGMVFQKPNPFPMSIYDNI---AYG 105
Query: 253 EKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGL-DTCADTLVGDEMLKGISGGQ 311
++ GIK ++LD +VE +K L D D L + G+SGGQ
Sbjct: 106 PRLHGIKDKKELD--------------EIVEESLKKAALWDEVKDRL--HDSALGLSGGQ 149
Query: 312 KKRLTTGELLVGPARVLFMDEISNGLDSSTTYQI---IKYLKHSTRALDGTTVISLLQPA 368
++RL L VL +DE ++ LD T +I I+ LK T++ +
Sbjct: 150 QQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKK------YTIVIVTHNM 203
Query: 369 PEAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFL 416
+A + D +G++V GP + F+ PK K D++
Sbjct: 204 QQAARISDRTAFFYDGELVEYGPTEQI--------FTNPKEKRTEDYI 243
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 1e-05
Identities = 57/258 (22%), Positives = 85/258 (32%), Gaps = 60/258 (23%)
Query: 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP- 207
T L LSG +R + L+GP +GK+TLL +AG SG I + G + +
Sbjct: 13 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT----SGSGSIQFAGQPLEAWSAT 68
Query: 208 --PRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLD 265
R AY+SQQ M V L + +
Sbjct: 69 ELARHRAYLSQQQTPPFAMPVWHYLTLHQPDKTRTELLN--------------------- 107
Query: 266 IFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGG--QKKRLTTGELLVG 323
+ L LD D L +SGG Q+ RL L +
Sbjct: 108 ------------------DVAGALALD---DKL--GRSTNQLSGGEWQRVRLAAVVLQIT 144
Query: 324 P-----ARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDV 378
P ++L +DE N LD + + + L + G ++
Sbjct: 145 PDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQ--GLAIVMSSHDLNHTLRHAHRA 202
Query: 379 ILLSEGQIVYQGPRVSVL 396
LL G+++ G R VL
Sbjct: 203 WLLKRGKLLASGRREEVL 220
|
Length = 248 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 1e-05
Identities = 43/157 (27%), Positives = 75/157 (47%), Gaps = 32/157 (20%)
Query: 857 LTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHS-- 914
LT L+G SG GKTT++ ++AG +T G I + G + + E +++
Sbjct: 43 LT-LLGPSGCGKTTVLRLIAGFET--PDSGRIMLDG-----QDITHVPA--ENRHVNTVF 92
Query: 915 ------PGLTVLESLLFSAWLRL---PSEIELETQRAFVEEVMELVELTSLSGALIGLPG 965
P +TV E++ F LR+ P+ E+ + V E + +V+L +
Sbjct: 93 QSYALFPHMTVFENVAFG--LRMQKTPAA-EITPR---VMEALRMVQLEEFAQR-----K 141
Query: 966 INGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDAR 1002
+ LS Q++R+ IA +V P ++ +DE S LD +
Sbjct: 142 PHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYK 178
|
Length = 375 |
| >gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 1e-05
Identities = 46/195 (23%), Positives = 85/195 (43%), Gaps = 17/195 (8%)
Query: 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFAR 902
++L + + G + A++G +G+GK+TL V+AG I+EGDI G
Sbjct: 21 EILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEE 80
Query: 903 IS------GYCEQNDIHSPGLTVLESLLFS-----AWLRLPSEIELETQRAFVEEVMELV 951
+ + Q I PG++ + L + + LP LE F+E + E +
Sbjct: 81 RAHLGIFLAF--QYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLE----FLEIINEKL 134
Query: 952 ELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTV 1011
+L + + + G S ++KR I + + + +DE SGLD A I+ +
Sbjct: 135 KLVGMDPSFLSRNVNEGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGI 194
Query: 1012 RNIVNTGRTIVCTIH 1026
++ + +I+ H
Sbjct: 195 NKLMTSENSIILITH 209
|
Length = 252 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 1e-05
Identities = 47/168 (27%), Positives = 72/168 (42%), Gaps = 39/168 (23%)
Query: 857 LTALVGVSGAGKTTLM-------DVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQ 909
+TAL+G SG GK+TL+ D++ G K I G + + G ++ +
Sbjct: 31 VTALIGPSGCGKSTLLRCLNRMNDLIEGVK----ITGKLTMDG----EDIYG-------- 74
Query: 910 NDIHSPGLTVLESLLFSAWLRLPSEIE------LETQRAFVEEVMELVELTSLSGALI-- 961
+I L + ++F P I L Q ++V++ V SL GA +
Sbjct: 75 -NIDVADLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWD 133
Query: 962 ------GLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARA 1003
GLS Q++RL IA + P ++ MDEPTS LD A
Sbjct: 134 EVKDRLKSHAF-GLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIA 180
|
Length = 249 |
| >gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 47.3 bits (112), Expect = 1e-05
Identities = 46/188 (24%), Positives = 84/188 (44%), Gaps = 21/188 (11%)
Query: 844 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARI 903
LL ++ G L L G +GAGKTTL+ ++AG +G+I +++
Sbjct: 16 LLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPE--KGEILFERQSIKKDLCTYQ 73
Query: 904 SGYC---EQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGAL 960
C ++ I +P LT+ E+ L+ ++ V + EL L SL L
Sbjct: 74 KQLCFVGHRSGI-NPYLTLRENCLY----------DIHFSPGAV-GITELCRLFSL-EHL 120
Query: 961 IGLP-GINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGR 1019
I P G+ LS+ Q++++ + ++ + +DEP LD + ++ ++ G
Sbjct: 121 IDYPCGL--LSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGG 178
Query: 1020 TIVCTIHQ 1027
++ T HQ
Sbjct: 179 AVLLTSHQ 186
|
Length = 200 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 1e-05
Identities = 67/233 (28%), Positives = 101/233 (43%), Gaps = 35/233 (15%)
Query: 845 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGYPKRQETFAR 902
L NV RP + AL+G +GAGK+TL+ L G +K G I G +E +
Sbjct: 14 LDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKD----SGSILFQG----KEIDFK 65
Query: 903 ISGYCEQNDI---HSPGLTVLE-SLLFSAWL-RLPSEIELETQRAFVEEVMELVELTSLS 957
S +N I H VL+ S++ + WL R P T+ FV++ + ++
Sbjct: 66 SSKEALENGISMVHQELNLVLQRSVMDNMWLGRYP------TKGMFVDQDKMYRDTKAIF 119
Query: 958 GALIGLPGIN--------GLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMR 1009
L I+ LS Q + + IA N IV MDEPTS L + +
Sbjct: 120 DEL----DIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFT 175
Query: 1010 TVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGSKSCELI 1062
+R + G IV H+ +IF+ DE+ + R G+ I PL + + I
Sbjct: 176 IIRKLKERGCGIVYISHKME-EIFQLCDEITIL-RDGQWIATQPLAGLTMDKI 226
|
Length = 491 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 48.7 bits (116), Expect = 1e-05
Identities = 59/213 (27%), Positives = 95/213 (44%), Gaps = 26/213 (12%)
Query: 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFAR 902
Q + +V+ + G A+VG +GAGKTTL+++L ++ G I I G
Sbjct: 349 QGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLL--QRVYDPTVGQILIDG--------ID 398
Query: 903 ISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSG---- 958
I+ ++ S ++ LF+ +R I L + A EEV E + +
Sbjct: 399 INTVTRESLRKSIATVFQDAGLFNRSIR--ENIRLGREGATDEEVYEAAKAAAAHDFILK 456
Query: 959 ------ALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVR 1012
L+G G N LS +R+RL IA ++ N I+ +DE TS LD A V +
Sbjct: 457 RSNGYDTLVGERG-NRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAI- 514
Query: 1013 NIVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 1045
+ + RT H+ S + D +LF+ +G
Sbjct: 515 DALRKNRTTFIIAHRLS--TVRNADLVLFLDQG 545
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 1e-05
Identities = 43/185 (23%), Positives = 78/185 (42%), Gaps = 22/185 (11%)
Query: 853 RPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQN-- 910
RPG + ++G +G GK+T + +LAG + + P E R G QN
Sbjct: 98 RPGKVVGILGPNGIGKSTALKILAGELKPNLGRYE----DPPSWDEVIKRFRGTELQNYF 153
Query: 911 ---------DIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALI 961
+H P L + ++ ++ +R +EV+E + L ++
Sbjct: 154 KKLYEGELRAVHKPQYVDLIPKVVKG--KVGELLKKVDERGKFDEVVERLGLENVLDR-- 209
Query: 962 GLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTI 1021
++ LS + +R+ IA L+ + + F DEP+S LD R R +R + G+ +
Sbjct: 210 ---DVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAEDGKYV 266
Query: 1022 VCTIH 1026
+ H
Sbjct: 267 IVVEH 271
|
Length = 591 |
| >gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 1e-05
Identities = 46/168 (27%), Positives = 76/168 (45%), Gaps = 16/168 (9%)
Query: 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYP------ 894
+L NV+ + + G AL+G SG GK+TL +L G ++ +G++ G P
Sbjct: 24 HQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPS--QGNVSWRGEPLAKLNR 81
Query: 895 KRQETFARISGYCEQNDIHS--PGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVE 952
+++ F R Q+ I + P TV E + LR ++ + A E++ V+
Sbjct: 82 AQRKAFRRDIQMVFQDSISAVNPRKTVREII--REPLRHLLSLDKAERLARASEMLRAVD 139
Query: 953 LTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLD 1000
L L P LS Q +R+ +A L P ++ +DE S LD
Sbjct: 140 LDD--SVLDKRPP--QLSGGQLQRVCLARALAVEPKLLILDEAVSNLD 183
|
Length = 268 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 1e-05
Identities = 45/184 (24%), Positives = 81/184 (44%), Gaps = 37/184 (20%)
Query: 831 ELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG---RKTGGIIEGD 887
+L+ G L ++L N++ + R G + G SG GK+TL+ ++A +G ++
Sbjct: 9 QLQNVGYLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEG 68
Query: 888 IYISGYPKRQETFARISGYCEQNDIHSPGL---TVLESLLFSAWLRLPSEIELET--QRA 942
IS E + + YC Q +P L TV ++L+F P +I +
Sbjct: 69 EDISTLKP--EIYRQQVSYCAQ----TPTLFGDTVYDNLIF------PWQIRNQQPDPAI 116
Query: 943 FVEEVMELVELTSLSGALIGLP------GINGLSTEQRKRLTIAVELVANPSIVFMDEPT 996
F++++ LP I LS +++R+++ L P ++ +DE T
Sbjct: 117 FLDDLERF-----------ALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEIT 165
Query: 997 SGLD 1000
S LD
Sbjct: 166 SALD 169
|
Length = 225 |
| >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.7 bits (113), Expect = 1e-05
Identities = 21/59 (35%), Positives = 34/59 (57%)
Query: 969 LSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQ 1027
LS Q++R++IA L P ++ DEPTS LD V+R ++ + G+T+V H+
Sbjct: 153 LSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHE 211
|
Length = 257 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 2e-05
Identities = 61/247 (24%), Positives = 99/247 (40%), Gaps = 60/247 (24%)
Query: 151 LDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRT 210
LD ++ I L+GP +GK+TLL + L SG I NG + R
Sbjct: 17 LDGINISISAGEFVFLVGPSGAGKSTLLKLIYKE---ELPTSGTIRVNGQDVSDL-RGRA 72
Query: 211 SAYVSQ------QDWQ-VAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDED 263
Y+ + QD++ + + V E + FA + GV + E+ +R
Sbjct: 73 IPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPR-----EIRKR----------- 116
Query: 264 LDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVG 323
V ++++GL + +SGG+++R+ +V
Sbjct: 117 ------------------VPAALELVGLSHKHRA-----LPAELSGGEQQRVAIARAIVN 153
Query: 324 PARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDD----VI 379
+L DE + LD TT++I+ LK +A GTTV+ A A EL D VI
Sbjct: 154 SPTILIADEPTGNLDPDTTWEIMNLLKKINKA--GTTVVV----ATHAKELVDTTRHRVI 207
Query: 380 LLSEGQI 386
L G++
Sbjct: 208 ALERGKL 214
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 48.7 bits (117), Expect = 2e-05
Identities = 61/277 (22%), Positives = 104/277 (37%), Gaps = 54/277 (19%)
Query: 130 MTEALL--RQLRI-YRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLG 186
M LL L + + + ++ + D+S + P + ++G SGK+TL LAL G L
Sbjct: 1 MMSPLLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLP 60
Query: 187 HHLQV-SGKITYNG--------HGFKEFVPPRTSAYVSQQDWQVAE--MTVRETLDFAGQ 235
++ SG++ +G ++ R A + Q MT+ + + A +
Sbjct: 61 EGGRITSGEVILDGRDLLGLSEREMRKLRGKRI-AMIFQDPMTSLNPVMTIGDQIREALR 119
Query: 236 CQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCA 295
G GS+ + + G+ E D L G
Sbjct: 120 LHGKGSRAEARKRAVELLEQVGLPDPERRD--RYPHQLSG-------------------- 157
Query: 296 DTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRA 355
G ++R+ L ++L DE + LD +T QI+ LK R
Sbjct: 158 --------------GMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRE 203
Query: 356 LDGTTVISLLQPAPE-AYELFDDVILLSEGQIVYQGP 391
L G V+ + EL D V+++ +G+IV GP
Sbjct: 204 L-GMAVL-FITHDLGVVAELADRVVVMYKGEIVETGP 238
|
Length = 539 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 46.8 bits (112), Expect = 2e-05
Identities = 58/243 (23%), Positives = 93/243 (38%), Gaps = 50/243 (20%)
Query: 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEF--V 206
LD +S I+ LLGP GKTTLL +A G SG+I +G K+ +
Sbjct: 14 VALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIA---GFETPTSGEILLDG---KDITNL 67
Query: 207 PP--RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDL 264
PP R V Q +TV E + F + + + E+ R
Sbjct: 68 PPHKRPVNTVFQNYALFPHLTVFENIAFGLRLKKLPKA-----EIKER------------ 110
Query: 265 DIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGP 324
V + ++ L+ A + +SGGQ++R+ LV
Sbjct: 111 -----------------VAEALDLVQLEGYA-----NRKPSQLSGGQQQRVAIARALVNE 148
Query: 325 ARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEG 384
+VL +DE LD + LK + L G T + + EA + D + ++++G
Sbjct: 149 PKVLLLDEPLGALDLKLRKDMQLELKRLQKEL-GITFVFVTHDQEEALTMSDRIAVMNKG 207
Query: 385 QIV 387
+I
Sbjct: 208 KIQ 210
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 2e-05
Identities = 77/328 (23%), Positives = 132/328 (40%), Gaps = 74/328 (22%)
Query: 740 LGYTLLFNALFTFFLSYLNPLGK--------QQAVVSKKELQERDRRRKGENVVIELREY 791
LG + FNAL ++FL PL Q A V+ L E Y
Sbjct: 411 LGQLITFNALLSYFL---TPLENIINLQPKLQAARVANNRLNE---------------VY 452
Query: 792 LQRSSSLNGKYFKQKGMV---LPFQPLSMAFG-NINYFVDVPVELKQEGVLEDRLQLLVN 847
L S +N K + + + +S ++G N D+ + +K
Sbjct: 453 LVDSEFINKKKRTELNNLNGDIVINDVSYSYGYGSNILSDISLTIKMNSK---------- 502
Query: 848 VTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFARIS 904
T +VG+SG+GK+TL +L G G+I ++G+ + T +
Sbjct: 503 ----------TTIVGMSGSGKSTLAKLLVGFFQAR--SGEILLNGFSLKDIDRHTLRQFI 550
Query: 905 GYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVE-----EVMELVELTSLSGA 959
Y Q G ++LE+LL A + S+ E+ E E M L T LS
Sbjct: 551 NYLPQEPYIFSG-SILENLLLGAKENV-SQDEIWAACEIAEIKDDIENMPLGYQTELSEE 608
Query: 960 LIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVN-TG 1018
G + +S Q++R+ +A L+ + ++ +DE TS LD + V N++N
Sbjct: 609 -----GSS-ISGGQKQRIALARALLTDSKVLILDESTSNLDTITEK---KIVNNLLNLQD 659
Query: 1019 RTIVCTIHQPSIDIFESFDELLFMKRGG 1046
+TI+ H+ + + + D+++ + G
Sbjct: 660 KTIIFVAHR--LSVAKQSDKIIVLDHGK 685
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 2e-05
Identities = 54/246 (21%), Positives = 94/246 (38%), Gaps = 45/246 (18%)
Query: 151 LDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRT 210
L ++ + P + LLG +GK+TL+ L+G H G IT N + +
Sbjct: 21 LKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGI---HEPTKGTITINNINYNKLDHKLA 77
Query: 211 S----AYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDI 266
+ + Q+ + E+TV E L I + K+ G+ D
Sbjct: 78 AQLGIGIIYQELSVIDELTVLENL--------------YIGRHLTK-KVCGV-NIIDWR- 120
Query: 267 FMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPAR 326
M+ A ++ +GL D V + +S K+ L + L+ A+
Sbjct: 121 EMRVRA----------AMMLLRVGLKVDLDEKVAN-----LSISHKQMLEIAKTLMLDAK 165
Query: 327 VLFMDEISNGLDSSTTYQIIKYLKHSTRAL--DGTTVISLLQPAPEAYELFDDVILLSEG 384
V+ MDE + SS T + + YL L +GT ++ + E + D ++ +G
Sbjct: 166 VIIMDEPT----SSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDG 221
Query: 385 QIVYQG 390
V G
Sbjct: 222 SSVCSG 227
|
Length = 510 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 46.8 bits (112), Expect = 2e-05
Identities = 32/106 (30%), Positives = 50/106 (47%), Gaps = 28/106 (26%)
Query: 307 ISGGQKKRLTTGELLVGPAR-------VLFMDEISNGLDSSTTYQIIKYLKHSTRALDGT 359
+SGGQK+R VG AR VL DE ++ LD TT I+ L+ R L T
Sbjct: 141 LSGGQKQR-------VGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLT 193
Query: 360 TVI-----SLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVLDFFA 400
V+ +++ + D V ++ +G++V +G V + FA
Sbjct: 194 IVLITHEMEVVK------RICDRVAVMEKGEVVEEGT---VEEVFA 230
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 2e-05
Identities = 64/249 (25%), Positives = 91/249 (36%), Gaps = 58/249 (23%)
Query: 151 LDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRT 210
L LS I T LLGP +GK+TLLL L G +L G++ G +E V
Sbjct: 21 LKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGI---YLPQRGRVKVMG---RE-VNAEN 73
Query: 211 SAYVSQQ--------DWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDE 262
+V + D QV TV + + F G+ E+ RR + A
Sbjct: 74 EKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKD-----EVERRVEEA------ 122
Query: 263 DLDIF-MKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELL 321
L M F D+ +S GQKKR+ +L
Sbjct: 123 -LKAVRMWDFR----------------------------DKPPYHLSYGQKKRVAIAGVL 153
Query: 322 VGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILL 381
V+ +DE LD +++ L G TVI A E D VI+L
Sbjct: 154 AMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQ--GKTVIVATHDVDLAAEWADQVIVL 211
Query: 382 SEGQIVYQG 390
EG+++ +G
Sbjct: 212 KEGRVLAEG 220
|
Length = 274 |
| >gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 2e-05
Identities = 23/85 (27%), Positives = 45/85 (52%), Gaps = 2/85 (2%)
Query: 306 GISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLL 365
G+SGGQK+R+ +L +L DE + GLD +++++ + + + TV +
Sbjct: 176 GLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKA--NNKTVFVIT 233
Query: 366 QPAPEAYELFDDVILLSEGQIVYQG 390
E+ D+VI++ +G+I+ G
Sbjct: 234 HTMEHVLEVADEVIVMDKGKILKTG 258
|
Length = 320 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 47.2 bits (113), Expect = 2e-05
Identities = 59/288 (20%), Positives = 108/288 (37%), Gaps = 58/288 (20%)
Query: 782 ENVVIELREYLQRSSSLNGKYFKQKGMVLPFQPLSMAFGNINYFVDVPVELKQEGVLEDR 841
NV + R Y ++S SL K K +
Sbjct: 7 SNVSKKFRIYHEKSYSLK-KRLKG------------LAKGGRKVAEFWA----------- 42
Query: 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIE---GDIYISGYPKRQE 898
L +++ G ++G +GAGK+TL+ ++A GI + G + ++G
Sbjct: 43 ---LKDISFEIYKGERVGIIGHNGAGKSTLLKLIA-----GIYKPTSGKVKVTG------ 88
Query: 899 TFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSG 958
+++ E P LT E++ + + E++ V+E++E EL G
Sbjct: 89 ---KVAPLIELGAGFDPELTGRENIYLRGLILGLTRKEID---EKVDEIIEFAEL----G 138
Query: 959 ALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTG 1018
I P + S+ RL +V P I+ +DE + DA + + +V
Sbjct: 139 DFIDQP-VKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEKN 197
Query: 1019 RTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGSKSCELIKYFE 1066
+TIV H I + D ++++ G++ G E+I +E
Sbjct: 198 KTIVLVSHDLGA-IKQYCDRAIWLEH-GQIRMEGSPE----EVIPAYE 239
|
Length = 249 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 48.0 bits (115), Expect = 2e-05
Identities = 44/167 (26%), Positives = 66/167 (39%), Gaps = 38/167 (22%)
Query: 853 RPGVLTALVGVSGAGKTTLMDVLAGRKTGGII--EGDIYISGYPKRQETFARISGYCEQN 910
R G LVG SG+GK+TL G +I +G+I G + + +
Sbjct: 311 RRGQTLGLVGESGSGKSTL-----GLALLRLIPSQGEIRFDGQDIDGLSRKEMRPL--RR 363
Query: 911 DIH----------SPGLTVLESLLFSAWLRLPSEIELETQR-AFVEEVMELVELTSLSGA 959
+ SP +TV + + LR+ +R V E +E V
Sbjct: 364 RMQVVFQDPYGSLSPRMTVGQ--IIEEGLRVHEPKLSAAERDQRVIEALEEV-------- 413
Query: 960 LIGLPGI------NGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLD 1000
GL + S QR+R+ IA L+ P ++ +DEPTS LD
Sbjct: 414 --GLDPATRNRYPHEFSGGQRQRIAIARALILKPELILLDEPTSALD 458
|
Length = 534 |
| >gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 2e-05
Identities = 48/184 (26%), Positives = 73/184 (39%), Gaps = 54/184 (29%)
Query: 857 LTALVGVSGAGKTTLMDVLA---GRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIH 913
+TAL+G SG GK+T + L R I+G + + G DI+
Sbjct: 73 VTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDG-----------------QDIY 115
Query: 914 SPGLTVLE-----SLLFSAWLRLPSEI------------ELETQ-------RAFVEEVME 949
G+ ++E ++F + P I ++ T R + E
Sbjct: 116 QDGVNLVELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDE 175
Query: 950 LVELTSLSGALIGLPGIN--------GLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDA 1001
LVE + AL +N GLS Q++RL IA L +P ++ MDEP S LD
Sbjct: 176 LVERSLRQAALWD--EVNDRLDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDP 233
Query: 1002 RAAA 1005
A +
Sbjct: 234 IATS 237
|
Length = 305 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 2e-05
Identities = 58/263 (22%), Positives = 102/263 (38%), Gaps = 43/263 (16%)
Query: 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP 207
L LD++S I ++G SGKTT + L L L +G I + FK+
Sbjct: 20 LKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALL---LPDTGTIEWI---FKDEKN 73
Query: 208 PRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDL--- 264
+ + + + ++ +++T K I E+ RR + + L
Sbjct: 74 KKKTKEK---EKVLEKLVIQKT---------RFKKIKKIKEIRRRVGVVFQFAEYQLFEQ 121
Query: 265 ----DIFMKSFALGGQKTS---LVVEYIMKILGLDTCADTLVGDEMLK----GISGGQKK 313
DI ++G K +YI +++GLD + L+ +SGGQK+
Sbjct: 122 TIEKDIIFGPVSMGVSKEEAKKRAAKYI-ELVGLD--------ESYLQRSPFELSGGQKR 172
Query: 314 RLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYE 373
R+ +L L DE + GLD +I++ + + G T+I + E
Sbjct: 173 RVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNK--QGKTIILVTHDLDNVLE 230
Query: 374 LFDDVILLSEGQIVYQGPRVSVL 396
I +G+I+ G +L
Sbjct: 231 WTKRTIFFKDGKIIKDGDTYDIL 253
|
Length = 305 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 2e-05
Identities = 56/228 (24%), Positives = 92/228 (40%), Gaps = 51/228 (22%)
Query: 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIE-GDIYISGYPKRQE- 898
Q + +V F G A+VG +G+GK+TL+ + + T G + DI I+ K +
Sbjct: 21 QAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYI 80
Query: 899 -TFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIE-------------------LE 938
+ G Q ES LF + EI L
Sbjct: 81 RPVRKRIGMVFQ---------FPESQLFED--TVEREIIFGPKNFKMNLDEVKNYAHRLL 129
Query: 939 TQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSG 998
F +VM +SG Q +++ I L NP I+ +DEPT+G
Sbjct: 130 MDLGFSRDVMSQSPF-QMSGG-------------QMRKIAIVSILAMNPDIIVLDEPTAG 175
Query: 999 LDARAAAIVMRTVRNI-VNTGRTIVCTIHQPSIDIFESFDELLFMKRG 1045
LD ++ VMR ++++ + +TI+ H + ++ DE++ MK G
Sbjct: 176 LDPQSKRQVMRLLKSLQTDENKTIILVSHDMN-EVARYADEVIVMKEG 222
|
Length = 286 |
| >gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 2e-05
Identities = 56/198 (28%), Positives = 87/198 (43%), Gaps = 26/198 (13%)
Query: 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIE----GDIYISGY----- 893
Q L ++T G L+G SGAGK++L+ VL ++E G + I+G
Sbjct: 16 QALFDITLDCPQGETLVLLGPSGAGKSSLLRVL------NLLEMPRSGTLNIAGNHFDFS 69
Query: 894 ----PKRQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVME 949
K R G Q P LTV ++L+ A R+ + L +A + +
Sbjct: 70 KTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLI-EAPCRV---LGLSKDQA-LARAEK 124
Query: 950 LVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMR 1009
L+E L P LS Q++R+ IA L+ P ++ DEPT+ LD A ++
Sbjct: 125 LLERLRLKPYADRFP--LHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVS 182
Query: 1010 TVRNIVNTGRTIVCTIHQ 1027
+R + TG T V H+
Sbjct: 183 IIRELAETGITQVIVTHE 200
|
Length = 242 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 45.3 bits (108), Expect = 3e-05
Identities = 34/102 (33%), Positives = 47/102 (46%), Gaps = 15/102 (14%)
Query: 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQV--SGKITYNGHGF---K 203
T+L+D+S I + LLGP SGK+TLL +AG L+ SG I +G +
Sbjct: 14 TVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAG-----LEEPDSGSILIDGEDLTDLE 68
Query: 204 EFVPP--RTSAYVSQQDWQVAEMTVRETLDFA---GQCQGVG 240
+ +PP R V Q +TV E + GQ Q V
Sbjct: 69 DELPPLRRRIGMVFQDFALFPHLTVLENIALGLSGGQQQRVA 110
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 46.4 bits (111), Expect = 3e-05
Identities = 39/191 (20%), Positives = 67/191 (35%), Gaps = 52/191 (27%)
Query: 146 SKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEF 205
+ +L+D++ + +LGP GK+TLL +AG SG++ +G
Sbjct: 14 GGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPT---SGEVLLDGRPVTGP 70
Query: 206 VPPRTSAYVSQQD----WQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPD 261
P YV Q+D W +TV + + + +G RE+
Sbjct: 71 GPDI--GYVFQEDALLPW----LTVLDNVALGLELRGKSKA-------EARERA-----K 112
Query: 262 EDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELL 321
E L++ GL D +SGG ++R+ L
Sbjct: 113 ELLELV----------------------GLAGFEDKYP-----HQLSGGMRQRVAIARAL 145
Query: 322 VGPARVLFMDE 332
++L +DE
Sbjct: 146 ATRPKLLLLDE 156
|
Length = 248 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 46.4 bits (111), Expect = 3e-05
Identities = 43/209 (20%), Positives = 78/209 (37%), Gaps = 65/209 (31%)
Query: 147 KLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV 206
K IL ++ ++ + ++GP SGK+TL + G + + G+I ++G
Sbjct: 16 KKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEV-TEGEILFDG------- 67
Query: 207 PPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARR---------EKIAG 257
+D + E++ E AR +I G
Sbjct: 68 ----------ED--ILELSP--------------------DERARAGIFLAFQYPVEIPG 95
Query: 258 IKPDEDLDIFMKSFALGGQKTSLV---VEYIMKILGLDTCADTLVGDEMLK-----GISG 309
+ + L M + ++ ++LGLD +E L+ G SG
Sbjct: 96 VTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLD--------EEFLERYVNEGFSG 147
Query: 310 GQKKRLTTGELLVGPARVLFMDEISNGLD 338
G+KKR +LL+ ++ +DE +GLD
Sbjct: 148 GEKKRNEILQLLLLEPKLAILDEPDSGLD 176
|
Length = 251 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 3e-05
Identities = 50/212 (23%), Positives = 88/212 (41%), Gaps = 50/212 (23%)
Query: 141 YRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTT---LLLALAGRLGHHLQVSGK-IT 196
Y R +L D+S + P +T L+GP SGK+T LL G + + GK I+
Sbjct: 21 YP-TRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPIS 79
Query: 197 YNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSK-YDMITELARREKI 255
H + + V Q+ + ++++ + + G+ S ++ + E A++
Sbjct: 80 QYEHKYLH----SKVSLVGQEP-VLFARSLQDNIAY-----GLQSCSFECVKEAAQKAHA 129
Query: 256 AGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKG--ISGGQKK 313
F+ A G DT VG+ KG +SGGQK+
Sbjct: 130 HS---------FISELASG--------------------YDTEVGE---KGSQLSGGQKQ 157
Query: 314 RLTTGELLVGPARVLFMDEISNGLDSSTTYQI 345
R+ L+ +VL +DE ++ LD+ + Q+
Sbjct: 158 RVAIARALIRNPQVLILDEATSALDAESEQQV 189
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.0 bits (111), Expect = 3e-05
Identities = 68/278 (24%), Positives = 111/278 (39%), Gaps = 52/278 (18%)
Query: 151 LDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLG---HHLQVSGKITYNGHGFKEFVP 207
L D+ ++ T L+G SGK+TLL L G L + V + + KE P
Sbjct: 22 LFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81
Query: 208 PRTSAYVSQQ--DWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLD 265
R V Q + Q+ E TV + + F Q G+ + + EKIA K
Sbjct: 82 VRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKE--------KAEKIAAEK------ 127
Query: 266 IFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPA 325
++++GL ++ +SGGQ +R+ +L
Sbjct: 128 --------------------LEMVGLAD----EFWEKSPFELSGGQMRRVAIAGILAMEP 163
Query: 326 RVLFMDEISNGLDSSTTYQIIKYLK--HSTRALDGTTVISLLQPAPEAYELFDDVILLSE 383
VL +DE + GLD ++++ + H + G TV+ + + + D V LL +
Sbjct: 164 EVLVLDEPTAGLDPKARIEMMQLFESIHQS----GQTVVLVTHLMDDVADYADYVYLLEK 219
Query: 384 GQIVYQGPRVSV---LDFFASMGFSCPKRKNVADFLQE 418
G I+ G V +DF + PK + AD LQ+
Sbjct: 220 GHIISCGTPSDVFQEVDFLKAHELGVPKATHFADQLQK 257
|
Length = 288 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 46.4 bits (110), Expect = 3e-05
Identities = 60/234 (25%), Positives = 92/234 (39%), Gaps = 47/234 (20%)
Query: 160 PSRLTLLLGPPSSGKTTLL---LALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQ 216
L LLGP +GKTTLL L L ++V+G G +VP R +
Sbjct: 5 KGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQR-----HE 59
Query: 217 QDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQ 276
W ++V T+ +G+ +G RR +A FA
Sbjct: 60 FAWDFP-ISVAHTV-MSGRTGHIG--------WLRRPCVA-------------DFA---- 92
Query: 277 KTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNG 336
V ++ +GL AD VG+ +SGGQ++R+ L VL +DE G
Sbjct: 93 ----AVRDALRRVGLTELADRPVGE-----LSGGQRQRVLVARALATRPSVLLLDEPFTG 143
Query: 337 LDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQG 390
LD T + + A GT ++ +A D V+LL+ G+++ G
Sbjct: 144 LDMPTQELLTELFI--ELAGAGTAILMTTHDLAQAMATCDRVVLLN-GRVIADG 194
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 46.8 bits (112), Expect = 3e-05
Identities = 74/298 (24%), Positives = 120/298 (40%), Gaps = 77/298 (25%)
Query: 136 RQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHL---QVS 192
R L +Y G++ L D++ I +++T L+GP GK+TLL L R+ + +V
Sbjct: 11 RDLNLYYGDK---HALKDINLDIPKNKVTALIGPSGCGKSTLLRCL-NRMNDLIPGARVE 66
Query: 193 GKITYNGHG-FKEFVPP----RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMIT 247
G++ +G + V R V Q+ M++ + + + G+
Sbjct: 67 GEVLLDGKNIYDPKVDVVELRRRVGMVFQKP-NPFPMSIYDNVAY-----GL-------- 112
Query: 248 ELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLK-- 305
++ GIK E +I S +K +L E V D + K
Sbjct: 113 ------RLHGIKDKELDEIVESSL----KKAALWDE---------------VKDRLHKSA 147
Query: 306 -GISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQI---IKYLKHSTRALDGTTV 361
G+SGGQ++RL L VL MDE ++ LD +T +I I LK T V
Sbjct: 148 LGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKK-----KYTIV 202
Query: 362 I---SLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFL 416
I ++ Q A + D G++V GP + F+ PK K D++
Sbjct: 203 IVTHNMQQ----AARVSDYTAFFYLGELVEFGPTDKI--------FTNPKHKRTEDYI 248
|
Length = 253 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 3e-05
Identities = 32/124 (25%), Positives = 57/124 (45%), Gaps = 5/124 (4%)
Query: 307 ISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQ 366
+SGGQK+R+ +L ++ DE ++ LD +I K + R T+IS+
Sbjct: 143 LSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIM-VDLRKTRKKTLISITH 201
Query: 367 PAPEAYELFDDVILLSEGQIVYQGPRVSVL---DFFASMGFSCPKRKNVADFLQEVTSKK 423
EA L D VI+ SEG+++ QG +L + P ++ L+ +
Sbjct: 202 DMDEAI-LADKVIVFSEGKLIAQGKPKEILNNKEILEKAKIDSPFIYKLSKKLKGIDPTY 260
Query: 424 DQEQ 427
++E+
Sbjct: 261 NEEE 264
|
Length = 271 |
| >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 3e-05
Identities = 50/206 (24%), Positives = 88/206 (42%), Gaps = 37/206 (17%)
Query: 855 GVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARIS---GYCEQN- 910
G T++VG +G+GK+T+ ++ G + G+I+ + + F ++ G QN
Sbjct: 35 GQWTSIVGHNGSGKSTIAKLMIGIEKVK--SGEIFYNNQAITDDNFEKLRKHIGIVFQNP 92
Query: 911 DIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELT--------SLSGALIG 962
D G V + F + + V E ++ V++ +LSG
Sbjct: 93 DNQFVGSIVKYDVAFGLENHA---VPYDEMHRRVSEALKQVDMLERADYEPNALSGG--- 146
Query: 963 LPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNI-VNTGRTI 1021
Q++R+ IA L NPS++ +DE TS LD A ++ VR + TI
Sbjct: 147 ----------QKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITI 196
Query: 1022 VCTIHQPSIDIFESF--DELLFMKRG 1045
+ H D+ E+ D ++ M +G
Sbjct: 197 ISITH----DLSEAMEADHVIVMNKG 218
|
Length = 269 |
| >gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.1 bits (113), Expect = 3e-05
Identities = 39/138 (28%), Positives = 56/138 (40%), Gaps = 41/138 (29%)
Query: 307 ISGGQKKRLTTGELLVGPAR-------VLFMDEISNGLDSSTTYQIIKYLKHSTRALDGT 359
+SGGQK+R V AR VL DE ++ LD +TT I++ LK R L G
Sbjct: 141 LSGGQKQR-------VAIARALASNPKVLLCDEATSALDPATTRSILELLKDINREL-GL 192
Query: 360 T---------VISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRK 410
T V+ + D V ++ G++V QG V + F+ PK
Sbjct: 193 TIVLITHEMDVVK---------RICDRVAVIDAGRLVEQGT---VSEVFSH-----PKHP 235
Query: 411 NVADFLQEVTSKKDQEQY 428
+F+Q E Y
Sbjct: 236 LTREFIQSTLHLDLPEDY 253
|
Length = 343 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 3e-05
Identities = 64/224 (28%), Positives = 97/224 (43%), Gaps = 34/224 (15%)
Query: 855 GVLTALVGVSGAGKTTLMDVLAGRKT---GGIIEGDIYISGYPKRQETFARISGYCEQND 911
G + AL+G SG GK+TL+ +LAG + G I+ + +S P Q R Q+
Sbjct: 45 GEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQ----RPINMMFQSY 100
Query: 912 IHSPGLTVLESLLFS-AWLRLP-SEIELETQRAFVEEVMELVELTSLSGALIGLPGINGL 969
P +TV +++ F +LP +EI R V E++ LV + + + L
Sbjct: 101 ALFPHMTVEQNIAFGLKQDKLPKAEI---ASR--VNEMLGLVHMQEFAKR-----KPHQL 150
Query: 970 STEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVN-TGRTIVCTIHQP 1028
S QR+R+ +A L P ++ +DEP LD + + V +I+ G T V H
Sbjct: 151 SGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTH-- 208
Query: 1029 SIDIFESFD---ELLFMKRGG-------ELIYAGPLGSKSCELI 1062
D E+ + M RG E IY P S E I
Sbjct: 209 --DQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEHPTTRYSAEFI 250
|
Length = 377 |
| >gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 3e-05
Identities = 48/198 (24%), Positives = 77/198 (38%), Gaps = 62/198 (31%)
Query: 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLM-------DVLAGRKTGGIIEGDIYISGYPK 895
Q L +++ +TA +G SG GK+TL+ D++ + IEG+I + G
Sbjct: 39 QALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCR----IEGEIRLDG--- 91
Query: 896 RQETFARISGYCEQNDIHSPGLTVLE-----SLLFSAWLRLPSEIE------LETQ---- 940
+I+ + V E ++F P I L Q
Sbjct: 92 --------------QNIYDKKVDVAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINN 137
Query: 941 RAFVEEVMELVELTSLSGALI-----------GLPGINGLSTEQRKRLTIAVELVANPSI 989
R ++E +E SL GA + GLS Q++RL IA + P +
Sbjct: 138 RRVLDEAVE----RSLRGAALWDEVKDRLHENAF----GLSGGQQQRLVIARAIAIEPEV 189
Query: 990 VFMDEPTSGLDARAAAIV 1007
+ +DEPTS LD + +
Sbjct: 190 LLLDEPTSALDPISTLKI 207
|
Length = 272 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 4e-05
Identities = 63/248 (25%), Positives = 100/248 (40%), Gaps = 53/248 (21%)
Query: 150 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPR 209
+L +L+ I+P ++GP SGK+TL L RL + G++ +G P
Sbjct: 472 VLSNLNLDIKPGEFIGIVGPSGSGKSTLT-KLLQRL--YTPQHGQVLVDGVDLAIADP-- 526
Query: 210 TSAYVSQQDWQVAEMTV--RETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIF 267
W +M V +E + F+ R+ IA P +
Sbjct: 527 --------AWLRRQMGVVLQENVLFSRSI---------------RDNIALCNPGAPFEHV 563
Query: 268 MKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARV 327
+ + L G I L +T VG E +SGGQ++R+ LVG R+
Sbjct: 564 IHAAKLAGAHDF--------ISELPQGYNTEVG-EKGANLSGGQRQRIAIARALVGNPRI 614
Query: 328 LFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYEL-----FDDVILLS 382
L DE ++ LD + I++ ++ R G TVI + A+ L D +I+L
Sbjct: 615 LIFDEATSALDYESEALIMRNMREICR---GRTVIII------AHRLSTVRACDRIIVLE 665
Query: 383 EGQIVYQG 390
+GQI G
Sbjct: 666 KGQIAESG 673
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 47.1 bits (113), Expect = 4e-05
Identities = 59/247 (23%), Positives = 106/247 (42%), Gaps = 50/247 (20%)
Query: 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPP 208
T+ L+ + + L+GP +GKT+LL AL G L + G + NG +E P
Sbjct: 364 TLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFLPYQ----GSLKINGIELRELDPE 419
Query: 209 ---RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLD 265
+ ++V Q + Q+ T+R+ + D DE L
Sbjct: 420 SWRKHLSWVGQ-NPQLPHGTLRDNVLLG--------NPDA--------------SDEQLQ 456
Query: 266 -IFMKSFALGGQKTSLVVEYIMKI-LGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVG 323
++ E++ + GLDT +GD+ G+S GQ +RL L+
Sbjct: 457 QALENAWVS---------EFLPLLPQGLDT----PIGDQAA-GLSVGQAQRLALARALLQ 502
Query: 324 PARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSE 383
P ++L +DE + LD+ + +++ L ++R T + ++ E +D + ++ +
Sbjct: 503 PCQLLLLDEPTASLDAHSEQLVMQALNAASR---RQTTL-MVTHQLEDLAQWDQIWVMQD 558
Query: 384 GQIVYQG 390
GQIV QG
Sbjct: 559 GQIVQQG 565
|
Length = 588 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 4e-05
Identities = 33/115 (28%), Positives = 57/115 (49%), Gaps = 18/115 (15%)
Query: 296 DTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRA 355
DT VG+ LK +SGG+K+R+ ++ +L +DE ++ LD+ T I L+ +
Sbjct: 390 DTGVGERGLK-LSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSA- 447
Query: 356 LDGTTVISLLQPAPEAYEL-----FDDVILLSEGQIVYQGPRVSVLD---FFASM 402
TT++ A+ L D++I+L G+IV +G +L +A M
Sbjct: 448 -GRTTLVI-------AHRLSTIIDADEIIVLDNGRIVERGTHEELLAAGGLYAEM 494
|
Length = 497 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 4e-05
Identities = 56/232 (24%), Positives = 94/232 (40%), Gaps = 56/232 (24%)
Query: 847 NVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIE---GDIYISGY------PK-- 895
+ + G + ++G+SG+GK+TL+ R +IE G+I + G
Sbjct: 46 DASLDVEEGEIFVIMGLSGSGKSTLV-----RLLNRLIEPTRGEILVDGKDIAKLSAAEL 100
Query: 896 ---RQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVE 952
R++ + + Q+ P TVLE++ F L + + + E +ELV
Sbjct: 101 RELRRKKISMVF----QSFALLPHRTVLENVAFG--LEV-QGVPKAEREERALEALELV- 152
Query: 953 LTSLSGALIGLPG-----INGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLD----ARA 1003
GL G N LS ++R+ +A L +P I+ MDE S LD
Sbjct: 153 ---------GLEGYADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEM 203
Query: 1004 AAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESF---DELLFMKRGGELIYAG 1052
++ + +TIV H D+ E+ D + MK GE++ G
Sbjct: 204 QDELLELQAKL---KKTIVFITH----DLDEALRIGDRIAIMK-DGEIVQVG 247
|
Length = 386 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 5e-05
Identities = 53/229 (23%), Positives = 84/229 (36%), Gaps = 46/229 (20%)
Query: 164 TLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPP--RTSAYVSQQDWQV 221
T ++GP SGK+TLL +AG SG++ NG PP R + + Q++
Sbjct: 27 TAIVGPSGSGKSTLLNLIAGFE---TPQSGRVLINGVDVT-AAPPADRPVSMLFQENNLF 82
Query: 222 AEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLV 281
A +TV + + G+ + E R+ I L K
Sbjct: 83 AHLTVEQNVGL-----GLSPGLKLTAE--DRQAIEVALARVGLAGLEKRLP--------- 126
Query: 282 VEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSST 341
L SGG+++R+ +LV VL +DE LD +
Sbjct: 127 --------------GEL---------SGGERQRVALARVLVRDKPVLLLDEPFAALDPAL 163
Query: 342 TYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQG 390
+++ L A TV+ + +A L V+ L G+I QG
Sbjct: 164 RAEMLD-LVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 5e-05
Identities = 60/249 (24%), Positives = 95/249 (38%), Gaps = 51/249 (20%)
Query: 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQV--SGKITYNGHGFKEFV 206
++ +L I LLGP GKTT+L +AG + SG+I +G V
Sbjct: 28 EVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAG-----FETPDSGRIMLDGQDITH-V 81
Query: 207 PP--RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDL 264
P R V Q MTV E + F + Q + E+ R
Sbjct: 82 PAENRHVNTVFQSYALFPHMTVFENVAFGLRMQKTPAA-----EITPR------------ 124
Query: 265 DIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGP 324
V ++++ L+ A +SGGQ++R+ +V
Sbjct: 125 -----------------VMEALRMVQLEEFAQRKPHQ-----LSGGQQQRVAIARAVVNK 162
Query: 325 ARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEG 384
+VL +DE + LD Q+ LK R L G T + + EA + D ++++ +G
Sbjct: 163 PKVLLLDESLSALDYKLRKQMQNELKALQRKL-GITFVFVTHDQEEALTMSDRIVVMRDG 221
Query: 385 QIVYQG-PR 392
+I G PR
Sbjct: 222 RIEQDGTPR 230
|
Length = 375 |
| >gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 5e-05
Identities = 42/189 (22%), Positives = 76/189 (40%), Gaps = 22/189 (11%)
Query: 853 RPGVLTALVGVSGAGKTTLMDVLAGR------KTGGIIEGDIYISGY--PKRQETFARIS 904
R G + LVG +G GK+T + +LAG+ K + D + + + Q F ++
Sbjct: 24 REGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTKLL 83
Query: 905 GYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQ---RAFVEEVMELVELTSLSGALI 961
+ I P L EL + R ++E+++ +EL +
Sbjct: 84 EG-DVKVIVKPQYVDLIPKAVKG-----KVGELLKKKDERGKLDELVDQLELRHVLDR-- 135
Query: 962 GLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTI 1021
I+ LS + +R+ IA L + F DEP+S LD + R +R + +
Sbjct: 136 ---NIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYV 192
Query: 1022 VCTIHQPSI 1030
+ H ++
Sbjct: 193 LVVEHDLAV 201
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 255 |
| >gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 5e-05
Identities = 22/91 (24%), Positives = 50/91 (54%), Gaps = 9/91 (9%)
Query: 969 LSTEQRKRLTIAVELVANP--SIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIH 1026
LS + +R+ +A EL + P ++ +DEP++GL + ++ ++ +++ G T++ H
Sbjct: 88 LSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEH 147
Query: 1027 QPSIDIFESFDELLFM-----KRGGELIYAG 1052
D+ S D ++ K GG+++++G
Sbjct: 148 NL--DVLSSADWIIDFGPGSGKSGGKVVFSG 176
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 176 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 44.3 bits (106), Expect = 6e-05
Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 4/79 (5%)
Query: 307 ISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQ 366
+SGGQ++R+ L+ +L +DE ++ LD T I++ L+ G TVI ++
Sbjct: 97 LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALR---ALAKGKTVI-VIA 152
Query: 367 PAPEAYELFDDVILLSEGQ 385
D +I+L +G+
Sbjct: 153 HRLSTIRDADRIIVLDDGR 171
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.6 bits (108), Expect = 6e-05
Identities = 37/127 (29%), Positives = 63/127 (49%), Gaps = 9/127 (7%)
Query: 273 LGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDE 332
L G+K ++ VEY + I+GL+ T +K +SGG+ +R++ L VL +DE
Sbjct: 103 LKGEK-NVDVEYYLSIVGLNKEYAT----RDVKNLSGGEAQRVSIARTLANNPEVLLLDE 157
Query: 333 ISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQGPR 392
++ LD ++T +II+ L + TVI + +A + D L++G +V
Sbjct: 158 PTSALDPTST-EIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYA-- 214
Query: 393 VSVLDFF 399
DFF
Sbjct: 215 -KTYDFF 220
|
Length = 241 |
| >gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 45.6 bits (108), Expect = 6e-05
Identities = 45/167 (26%), Positives = 79/167 (47%), Gaps = 29/167 (17%)
Query: 848 VTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIE---GDIYISGYPKRQETFARIS 904
V+ R G A++G +G+GK+TL +LAG +IE G+I I+ +P ++ S
Sbjct: 32 VSFTLREGQTLAIIGENGSGKSTLAKMLAG-----MIEPTSGEILINDHPLHFGDYSFRS 86
Query: 905 G-----YCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGA 959
+ + N +P L + + LRL +++E E +R + E + +V L
Sbjct: 87 KRIRMIFQDPNTSLNPRLRI--GQILDFPLRLNTDLEPEQRRKQIFETLRMVGL------ 138
Query: 960 LIGLPG-----INGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDA 1001
LP + L+ Q++R+ +A L+ P I+ DE + LD
Sbjct: 139 ---LPDHANYYPHMLAPGQKQRVALARALILRPKIIIADEALASLDM 182
|
Length = 267 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 6e-05
Identities = 49/220 (22%), Positives = 77/220 (35%), Gaps = 42/220 (19%)
Query: 825 FVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG---RKTG 881
++ + L L RPG + G SGAGKT+L+ LAG +G
Sbjct: 395 LENLSLRTPDGQTLLSELNF------EVRPGERLLITGESGAGKTSLLRALAGLWPWGSG 448
Query: 882 GII----EGDIYISGYPK-RQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIE 936
I +++ P Q T Y S
Sbjct: 449 RISMPADSALLFLPQRPYLPQGTLREALCYPNAAPDFSD--------------------- 487
Query: 937 LETQRAFVEEVMELVELTSLSGALIGL-PGINGLSTEQRKRLTIAVELVANPSIVFMDEP 995
A + V+ V L L+ L LS +++RL A L+ P VF+DE
Sbjct: 488 -----AELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEA 542
Query: 996 TSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFES 1035
TS LD + + ++ + T++ H+P++ F S
Sbjct: 543 TSALDEETEDRLYQLLKEEL-PDATVISVGHRPTLWNFHS 581
|
Length = 604 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.4 bits (107), Expect = 7e-05
Identities = 59/239 (24%), Positives = 97/239 (40%), Gaps = 40/239 (16%)
Query: 158 IRPSRLTLLLGPPSSGKTTLLLALAGRLGHHL----QVSGKITYNGHGFKEFVPPRTSAY 213
++ + L+GP GKTT L A+ R+ H L +V+G+I +G ++ PR
Sbjct: 27 VQRGTVNALIGPSGCGKTTFLRAI-NRM-HDLTPGARVTGRILLDG---QDIYGPR---- 77
Query: 214 VSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFAL 273
V + +R + Q + + K+AGI+ D D M+
Sbjct: 78 -------VDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIR---DRDHLME---- 123
Query: 274 GGQKTSLVVEYIMKILGL-DTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDE 332
V E ++ L D D L G+SGGQ++RL L +L MDE
Sbjct: 124 -------VAERSLRGAALWDEVKDRL--KTPATGLSGGQQQRLCIARALAVEPEILLMDE 174
Query: 333 ISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQGP 391
++ LD ++T +I + + TT+I + +A + D G +V GP
Sbjct: 175 PTSALDPASTARIEDLMTDLKKV---TTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGP 230
|
Length = 252 |
| >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 44.8 bits (107), Expect = 7e-05
Identities = 53/207 (25%), Positives = 84/207 (40%), Gaps = 43/207 (20%)
Query: 835 EGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISG 892
E +L L +N G L + G +GAGKT+L+ +LAG R G++ G
Sbjct: 13 ERILFSGLSFTLN------AGELVQIEGPNGAGKTSLLRILAGLARPD----AGEVLWQG 62
Query: 893 YPKRQ--ETFARISGYCEQNDIHSPG----LTVLESLLFSAWLRLPSEIELETQRAFVEE 946
P R+ + + + Y H PG LT LE+L F L P + E A
Sbjct: 63 EPIRRQRDEYHQDLLYLG----HQPGIKTELTALENLRFYQRLHGPGDDE-ALWEAL--- 114
Query: 947 VMELVELTSLSGALIGLPG-----INGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDA 1001
A +GL G + LS Q++R+ +A + + +DEP + +D
Sbjct: 115 ------------AQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDK 162
Query: 1002 RAAAIVMRTVRNIVNTGRTIVCTIHQP 1028
+ A + + G ++ T HQ
Sbjct: 163 QGVARLEALLAQHAEQGGMVILTTHQD 189
|
Length = 204 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 44.5 bits (106), Expect = 9e-05
Identities = 53/219 (24%), Positives = 83/219 (37%), Gaps = 50/219 (22%)
Query: 150 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGF-----KE 204
L D+S IR L GP +GKTTLL L G L G++ G ++
Sbjct: 17 ALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGAL---TPSRGQVRIAGEDVNRLRGRQ 73
Query: 205 FVPPRTSAYVSQQDWQ-VAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDED 263
R V QD++ + + TV E + + +G E+ RR
Sbjct: 74 LPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKE-----REIQRR----------- 117
Query: 264 LDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVG 323
V ++ +GL+ AD +SGG+++R+ +V
Sbjct: 118 ------------------VGAALRQVGLEHKADAFPEQ-----LSGGEQQRVAIARAIVN 154
Query: 324 PARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVI 362
+L DE + LD + +I+ LK + GTTVI
Sbjct: 155 SPPLLLADEPTGNLDPDLSERILDLLKRLNKR--GTTVI 191
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 9e-05
Identities = 63/244 (25%), Positives = 103/244 (42%), Gaps = 49/244 (20%)
Query: 147 KLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV 206
K T ++++S + + + LLGP +GK+TLL + G L SG+I ++GH
Sbjct: 12 KQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGIL---RPTSGEIIFDGH------ 62
Query: 207 PPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDI 266
W R+ L +GS +I E + E+L +
Sbjct: 63 -----------PWT------RKDL------HKIGS---LIESPPLYENLTA---RENLKV 93
Query: 267 FMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPAR 326
L G S + E ++ I+ L T G + K S G K+RL L+ +
Sbjct: 94 HTT---LLGLPDSRIDE-VLNIVDL-----TNTGKKKAKQFSLGMKQRLGIAIALLNHPK 144
Query: 327 VLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQI 386
+L +DE +NGLD ++ + ++ G TVI E +L D + ++SEG +
Sbjct: 145 LLILDEPTNGLDPIGIQELRELIRSFPE--QGITVILSSHILSEVQQLADHIGIISEGVL 202
Query: 387 VYQG 390
YQG
Sbjct: 203 GYQG 206
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.1 bits (106), Expect = 9e-05
Identities = 51/182 (28%), Positives = 76/182 (41%), Gaps = 40/182 (21%)
Query: 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETF 900
+ Q+L N+ F +TA++G SG GK+TL+ L + I+ G
Sbjct: 16 KHQVLKNINMDFPERQITAIIGPSGCGKSTLLRAL--NRMNDIVSG-------------- 59
Query: 901 ARISG--YCEQNDIHSPGLTVLE-----SLLFSAWLRLPSEIELETQRAFVEEVM----- 948
AR+ G + +I+SP L V+ ++F P I AF ++
Sbjct: 60 ARLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPNPFPKSIF--DNVAFGPRMLGTTAQ 117
Query: 949 ----ELVELTSLSGALIGLPGIN------GLSTEQRKRLTIAVELVANPSIVFMDEPTSG 998
E+VE + AL N LS Q++RL IA L P ++ MDEP S
Sbjct: 118 SRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSA 177
Query: 999 LD 1000
LD
Sbjct: 178 LD 179
|
Length = 251 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 1e-04
Identities = 52/241 (21%), Positives = 97/241 (40%), Gaps = 51/241 (21%)
Query: 151 LDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKE--FVPP 208
LD++S + R+ LGP +GK+T + + G L SG + G +
Sbjct: 18 LDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYL---PPDSGSVQVCGEDVLQNPKEVQ 74
Query: 209 RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFM 268
R Y+ + + +M VRE L F G+ + ++++ +
Sbjct: 75 RNIGYLPEHNPLYLDMYVREYLQFIAGIYGMKGQ-------LLKQRVEEMI--------- 118
Query: 269 KSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVL 328
+ L E KI +S G ++R+ + L+ +VL
Sbjct: 119 -------ELVGLRPEQHKKI----------------GQLSKGYRQRVGLAQALIHDPKVL 155
Query: 329 FMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVIS--LLQPAPEAYELFDDVILLSEGQI 386
+DE + GLD + +I +K+ D T ++S ++Q E + D VI++++G+I
Sbjct: 156 ILDEPTTGLDPNQLVEIRNVIKNI--GKDKTIILSTHIMQ---EVEAICDRVIIINKGKI 210
Query: 387 V 387
V
Sbjct: 211 V 211
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.0 bits (106), Expect = 1e-04
Identities = 59/206 (28%), Positives = 84/206 (40%), Gaps = 42/206 (20%)
Query: 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGI----IEGDIYISGYPKRQE 898
Q L NV+ +TAL+G SG GK+T + L R I IEG + I
Sbjct: 26 QALKNVSMQIPKNSVTALIGPSGCGKSTFIRCL-NRMNDLIKNCRIEGKVSI-------- 76
Query: 899 TFARISGYCEQNDIHSPGLTVLE-----SLLFSAWLRLPSEIE------LETQRAFVEEV 947
E DI+ P + V+E ++F P I A +++
Sbjct: 77 ---------EGEDIYEPDVDVVELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDL 127
Query: 948 MELVELTSLSGAL-------IGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLD 1000
+VE S AL + P ++ LS Q++RL IA L P I+ DEPTS LD
Sbjct: 128 DGVVENALRSAALWDETSDRLKSPALS-LSGGQQQRLCIARTLAVKPKIILFDEPTSALD 186
Query: 1001 ARAAAIVMRTVRNIVNTGRTIVCTIH 1026
+ A + + N+ TIV H
Sbjct: 187 PISTARIEDLIMNL-KKDYTIVIVTH 211
|
Length = 258 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 1e-04
Identities = 49/178 (27%), Positives = 73/178 (41%), Gaps = 44/178 (24%)
Query: 845 LVNVTGAFRPGVLTALVGVSGAGKTT----LMDVLAGRKTGGIIEGDIYISGYPKRQETF 900
+ N++ RPG LVG SG+GK+T L+ ++ + G+I+ G P
Sbjct: 302 VKNISFTLRPGETLGLVGESGSGKSTTGLALLRLINSQ-------GEIWFDGQPLHNLNR 354
Query: 901 ARISGYCEQ--------NDIHSPGLTVLESLLFSAWLRLPSEIELETQR-AFVEEVMELV 951
++ + N +P L VL+ + LR+ QR V VME V
Sbjct: 355 RQLLPVRHRIQVVFQDPNSSLNPRLNVLQ--IIEEGLRVHQPTLSAAQREQQVIAVMEEV 412
Query: 952 EL---------TSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLD 1000
L SG QR+R+ IA L+ PS++ +DEPTS LD
Sbjct: 413 GLDPETRHRYPAEFSGG-------------QRQRIAIARALILKPSLIILDEPTSSLD 457
|
Length = 529 |
| >gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.1 bits (106), Expect = 1e-04
Identities = 56/217 (25%), Positives = 93/217 (42%), Gaps = 20/217 (9%)
Query: 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE 898
E + L V+ + G +++G +G+GK+T ++ G EG + I G E
Sbjct: 17 ESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEE--FEGKVKIDGELLTAE 74
Query: 899 T---FARISGYCEQN-DIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELT 954
R G QN D G TV + + F +E Q EE+++ V+
Sbjct: 75 NVWNLRRKIGMVFQNPDNQFVGATVEDDVAFG----------MENQGIPREEMIKRVDEA 124
Query: 955 SLSGALIGLPGING--LSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVR 1012
L+ ++ LS Q++R+ +A + P I+ +DE TS LD +MR +
Sbjct: 125 LLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIH 184
Query: 1013 NIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELI 1049
I + V +I +D S D +L M + GE+I
Sbjct: 185 EIKEKYQLTVLSITH-DLDEAASSDRILVM-KAGEII 219
|
Length = 277 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 46.1 bits (109), Expect = 1e-04
Identities = 42/153 (27%), Positives = 67/153 (43%), Gaps = 23/153 (15%)
Query: 855 GVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHS 914
G L A+VG G GK++L+ L +EG +++ G A I QND
Sbjct: 664 GALVAVVGQVGCGKSSLLSALLAEMDK--VEGHVHMKGSVAYVPQQAWI-----QND--- 713
Query: 915 PGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGA---LIGLPGINGLST 971
++ E++LF L + +E L +L L IG G+N LS
Sbjct: 714 ---SLRENILFGKALNEKY------YQQVLEACALLPDLEILPSGDRTEIGEKGVN-LSG 763
Query: 972 EQRKRLTIAVELVANPSIVFMDEPTSGLDARAA 1004
Q++R+++A + +N I D+P S +DA
Sbjct: 764 GQKQRVSLARAVYSNADIYLFDDPLSAVDAHVG 796
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.6 bits (105), Expect = 1e-04
Identities = 62/260 (23%), Positives = 105/260 (40%), Gaps = 51/260 (19%)
Query: 163 LTLLLGPPSSGKTTLLLALAGRLG---HHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDW 219
LT L+GP GK+T L L R+ +++++G+I + G Y S+ D
Sbjct: 32 LTALIGPSGCGKSTFLRCL-NRMNDDIENIKITGEIKFEGQNI----------YGSKMDL 80
Query: 220 QVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTS 279
+ +R+ + Q Q + + +A KIAG+K E +D
Sbjct: 81 ----VELRKEVGMVFQ-QPTPFPFSVYDNVAYGLKIAGVKDKELID-------------Q 122
Query: 280 LVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLD- 338
V E + + D L D + SGGQ++R+ L +V+ +DE ++ LD
Sbjct: 123 RVEESLKQAAIWKETKDNL--DRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDP 180
Query: 339 --SSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVL 396
SS + + LKH T I + +A + D L G ++ GP +
Sbjct: 181 ISSSEIEETLMELKHQ------YTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEM- 233
Query: 397 DFFASMGFSCPKRKNVADFL 416
F PK++ +D+L
Sbjct: 234 -------FIAPKKQITSDYL 246
|
Length = 251 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 1e-04
Identities = 54/188 (28%), Positives = 88/188 (46%), Gaps = 25/188 (13%)
Query: 844 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARI 903
LL +V+ + G LT ++G +G+GK+TL+ L + I EG ++ + + A +
Sbjct: 675 LLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFE--ISEGRVWA------ERSIAYV 726
Query: 904 SGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMEL-VELTSLSGAL-- 960
+Q I + TV ++LF + E + A V +L +L L G L
Sbjct: 727 P---QQAWIMNA--TVRGNILFF-------DEEDAARLADAVRVSQLEADLAQLGGGLET 774
Query: 961 -IGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGR 1019
IG G+N LS Q+ R+++A + AN + +D+P S LDA V+ G+
Sbjct: 775 EIGEKGVN-LSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGK 833
Query: 1020 TIVCTIHQ 1027
T V HQ
Sbjct: 834 TRVLATHQ 841
|
Length = 1560 |
| >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.5 bits (105), Expect = 1e-04
Identities = 18/33 (54%), Positives = 22/33 (66%)
Query: 968 GLSTEQRKRLTIAVELVANPSIVFMDEPTSGLD 1000
LS Q++RL IA L NP ++ MDEPTS LD
Sbjct: 155 SLSGGQQQRLCIARALATNPDVLLMDEPTSALD 187
|
Length = 259 |
| >gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.6 bits (105), Expect = 1e-04
Identities = 60/236 (25%), Positives = 96/236 (40%), Gaps = 49/236 (20%)
Query: 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLM---DVLAGRKTGGIIEGDIYISGYPKRQET 899
Q L N+ +TAL+G SG GK+T + + + G EG+I + +P
Sbjct: 30 QALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIIL--HP----- 82
Query: 900 FARISGYCEQNDIHSPGLTVLE-----SLLFSAWLRLPSEIELET----------QRAFV 944
+ +I SP + +E S++F P I +R+ +
Sbjct: 83 --------DNVNILSPEVDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSIL 134
Query: 945 EEVMELVELTSLSGALI--------GLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPT 996
EE +E +L A + G N LS Q++RL IA L +P I+ DEPT
Sbjct: 135 EERVE----NALRNAALWDEVKDRLGDLAFN-LSGGQQQRLCIARALATDPEILLFDEPT 189
Query: 997 SGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAG 1052
S LD A A + + ++ N ++ T + + ++M GELI G
Sbjct: 190 SALDPIATASIEELISDLKNKVTILIVTHNMQQAARVSDYTAYMYM---GELIEFG 242
|
Length = 265 |
| >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.7 bits (105), Expect = 1e-04
Identities = 31/110 (28%), Positives = 53/110 (48%), Gaps = 11/110 (10%)
Query: 307 ISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQ 366
+SGGQ++ L L VL +DE ++ LD +TT +I ++++ D TVI +
Sbjct: 164 LSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLA---DRLTVIIVTH 220
Query: 367 PAPEAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFL 416
+A + D L +G++V +GP + FS PK A ++
Sbjct: 221 NLAQAARISDRAALFFDGRLVEEGPTEQL--------FSSPKHAETARYV 262
|
Length = 276 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 44.9 bits (107), Expect = 2e-04
Identities = 63/251 (25%), Positives = 103/251 (41%), Gaps = 59/251 (23%)
Query: 150 ILDDLSGIIRPSRLTLLLGPPSSGKTTL--LLALAGRLGHHLQVSGKITYNGHGFKEFVP 207
++++ S ++P + L+G SGK+T+ L+A G + SG+I ++G +E
Sbjct: 494 LIENFSLTLQPGQRVALVGGSGSGKSTIAKLVA-----GLYQPWSGEILFDGIPREEIPR 548
Query: 208 PRTSAYVS--QQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLD 265
+ V+ QD + E TVR+ L + +D PD DL
Sbjct: 549 EVLANSVAMVDQDIFLFEGTVRDNL----------TLWD------------PTIPDADLV 586
Query: 266 IFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPA 325
K A+ TS Y D + E +SGGQ++RL LV
Sbjct: 587 RACKDAAIHDVITSRPGGY-----------DAELA-EGGANLSGGQRQRLEIARALVRNP 634
Query: 326 RVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYEL-----FDDVIL 380
+L +DE ++ LD T I L+ G T I + A+ L D++I+
Sbjct: 635 SILILDEATSALDPETEKIIDDNLRRR-----GCTCIIV------AHRLSTIRDCDEIIV 683
Query: 381 LSEGQIVYQGP 391
L G++V +G
Sbjct: 684 LERGKVVQRGT 694
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 2e-04
Identities = 55/240 (22%), Positives = 92/240 (38%), Gaps = 47/240 (19%)
Query: 150 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPR 209
L+D+S I L ++LGP GKTTLL +AG + G I NG + P
Sbjct: 20 ALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTP---SRGSIQLNGRRIEG--PGA 74
Query: 210 TSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMK 269
V Q + + + V + + F Q +G+ A+R +IA +
Sbjct: 75 ERGVVFQNEALLPWLNVIDNVAFGLQLRGIEK--------AQRREIA--------HQMLA 118
Query: 270 SFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLF 329
L G + + +SGG ++R+ L ++L
Sbjct: 119 LVGLEG-----------------------AEHKYIWQLSGGMRQRVGIARALAVEPQLLL 155
Query: 330 MDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLS--EGQIV 387
+DE LD+ T Q+ + L + G V+ + EA L +++LS G++V
Sbjct: 156 LDEPFGALDALTREQMQELLLDLWQE-TGKQVLLITHDIEEALFLATRLVVLSPGPGRVV 214
|
Length = 259 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 2e-04
Identities = 63/270 (23%), Positives = 106/270 (39%), Gaps = 61/270 (22%)
Query: 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPP 208
T L D+S ++ LLGP GKTTLL +AG Q +G I G +PP
Sbjct: 18 TALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGL---ERQTAGTIYQGGRDIT-RLPP 73
Query: 209 RTSAY--VSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDI 266
+ Y V Q +TV + + + + +G+G E+A R
Sbjct: 74 QKRDYGIVFQSYALFPNLTVADNIAYGLKNRGMGRA-----EVAER-------------- 114
Query: 267 FMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPAR 326
V ++ ++GL G +SGGQ++R+ L
Sbjct: 115 ---------------VAELLDLVGLPGSERKYPGQ-----LSGGQQQRVALARALATSPG 154
Query: 327 VLFMDEISNGLDSSTTYQIIKYLKHSTRALD---GTTVISLLQPAPEAYELFDDVILLSE 383
+L +DE + LD+ ++ ++L+ R L G T I + EA + D +++++
Sbjct: 155 LLLLDEPLSALDA----RVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNH 210
Query: 384 GQI--------VYQGPRVS-VLDFFASMGF 404
G I +Y+ P V DF + +
Sbjct: 211 GVIEQVGTPQEIYRHPATPFVADFVGEVNW 240
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 2e-04
Identities = 55/238 (23%), Positives = 93/238 (39%), Gaps = 51/238 (21%)
Query: 150 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPR 209
L+D++ + L ++LGP GKTTLL +AG + + G IT +G + P
Sbjct: 16 ALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQ---HGSITLDGKPVEG--PGA 70
Query: 210 TSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMK 269
V Q + + V++ + F Q GV +R +IA
Sbjct: 71 ERGVVFQNEGLLPWRNVQDNVAFGLQLAGVEK--------MQRLEIAH------------ 110
Query: 270 SFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLF 329
++K +GL+ + +SGGQ++R+ L ++L
Sbjct: 111 --------------QMLKKVGLEG-----AEKRYIWQLSGGQRQRVGIARALAANPQLLL 151
Query: 330 MDEISNGLDSSTTYQIIKYLK---HSTRALDGTTVISLLQPAPEAYELFDDVILLSEG 384
+DE LD+ T Q+ L T G V+ + EA + +++LLS G
Sbjct: 152 LDEPFGALDAFTREQMQTLLLKLWQET----GKQVLLITHDIEEAVFMATELVLLSPG 205
|
Length = 255 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 2e-04
Identities = 27/98 (27%), Positives = 49/98 (50%), Gaps = 10/98 (10%)
Query: 296 DTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRA 355
DT + + + + SGG+++RL +L+ A ++ +DE + GLD T Q++ +
Sbjct: 88 DTTLRNNLGRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLI---FEV 144
Query: 356 LDGTTVISL---LQPAPEAYELFDDVILLSEGQIVYQG 390
L T+I + L E D ++ L G+I+ QG
Sbjct: 145 LKDKTLIWITHHLT----GIEHMDKILFLENGKIIMQG 178
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 2e-04
Identities = 62/258 (24%), Positives = 104/258 (40%), Gaps = 63/258 (24%)
Query: 145 RSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKE 204
R LD L+ +RP L+GP +GK+TL L L + SG+I +G ++
Sbjct: 350 RPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLL---LRFYDPQSGRILLDGVDLRQ 406
Query: 205 FVPP--RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDE 262
P R + QD + +V E + + G D E A R A
Sbjct: 407 LDPAELRARMALVPQDPVLFAASVMENIRY-----GRPDATDEEVEAAARAAHA------ 455
Query: 263 DLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLV 322
F I L DT +G E +SGGQ++R+ ++
Sbjct: 456 --HEF--------------------ISALPEGYDTYLG-ERGVTLSGGQRQRIAIARAIL 492
Query: 323 GPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDG-----TTVI-----SLLQPAPEAY 372
A +L +DE ++ LD+ + Q+++ +AL+ TT+I + + A
Sbjct: 493 KDAPILLLDEATSALDAESE-QLVQ------QALETLMKGRTTLIIAHRLATVLKA---- 541
Query: 373 ELFDDVILLSEGQIVYQG 390
D ++++ +G+IV QG
Sbjct: 542 ---DRIVVMDQGRIVAQG 556
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 45.8 bits (108), Expect = 2e-04
Identities = 22/62 (35%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Query: 969 LSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIV-NTGRTIVCTIHQ 1027
LS Q++R++IA ++ NP I+ +DE TS LD ++ +V +T+ N+ N R + H+
Sbjct: 580 LSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHR 639
Query: 1028 PS 1029
S
Sbjct: 640 LS 641
|
Length = 1466 |
| >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.1 bits (104), Expect = 2e-04
Identities = 30/89 (33%), Positives = 44/89 (49%), Gaps = 11/89 (12%)
Query: 969 LSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQP 1028
LS QR+RL IA L P I+ MDEPT+ +D A + + + TIV H P
Sbjct: 150 LSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFEL-KKEYTIVLVTHSP 208
Query: 1029 S----IDIFESFDELLFMKRGGELIYAGP 1053
+ + + +F L++ G+LI GP
Sbjct: 209 AQAARVSDYVAF---LYL---GKLIEVGP 231
|
Length = 253 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.9 bits (103), Expect = 2e-04
Identities = 59/224 (26%), Positives = 98/224 (43%), Gaps = 29/224 (12%)
Query: 844 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVL--------AGRKTGGII---EGDIY-IS 891
+L ++T + ++G SG+GK+TL+ VL + K G + DI+ I
Sbjct: 25 ILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQID 84
Query: 892 GYPKRQETFARISGYCEQNDIHSPGLTVLESLLF---SAWLRLPSEIELETQRAFVEEVM 948
R+E G Q P L++ +++ + S ++ EI + VEE +
Sbjct: 85 AIKLRKEV-----GMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREI-----KKIVEECL 134
Query: 949 ELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVM 1008
V L + P + LS Q++RLTIA L P ++ MDEPTS +D + +
Sbjct: 135 RKVGLWKEVYDRLNSPA-SQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIE 193
Query: 1009 RTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAG 1052
+ + + N IV H P + D + F+ GEL+ G
Sbjct: 194 KLITELKNE-IAIVIVSHNPQ-QVARVADYVAFL-YNGELVEWG 234
|
Length = 257 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 44.6 bits (105), Expect = 3e-04
Identities = 52/212 (24%), Positives = 85/212 (40%), Gaps = 44/212 (20%)
Query: 129 NMTEAL-LRQL-RIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLG 186
N T+ L L +L ++Y G S +D L +RP LLG +GKTT L G
Sbjct: 1933 NKTDILRLNELTKVYSGTSSP--AVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTG--- 1987
Query: 187 HHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMI 246
V+ D VA ++ + Q G ++D I
Sbjct: 1988 ------------------------DTTVTSGDATVAGKSILTNISDVHQNMGYCPQFDAI 2023
Query: 247 TELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKG 306
+L + E L ++ + + ++ V + ++ LGL AD L G
Sbjct: 2024 DDL--------LTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGT----- 2070
Query: 307 ISGGQKKRLTTGELLVGPARVLFMDEISNGLD 338
SGG K++L+T L+G ++ +DE + G+D
Sbjct: 2071 YSGGNKRKLSTAIALIGCPPLVLLDEPTTGMD 2102
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 3e-04
Identities = 54/246 (21%), Positives = 99/246 (40%), Gaps = 53/246 (21%)
Query: 150 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRL----GHHLQVSGKITYNGHGFKEF 205
+L D++ I P + +L GP SGKTTLL L G L L+V G+ G KE
Sbjct: 20 VLFDINLEINPGEIVILTGPSGSGKTTLL-TLIGGLRSVQEGSLKVLGQ-ELYGASEKEL 77
Query: 206 VPPRTS-AYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDL 264
V R + Y+ Q + +T R Q V ++ L+ +E
Sbjct: 78 VQLRRNIGYIFQAHNLLGFLTAR---------QNVQMALELQPNLSYQEARE-------- 120
Query: 265 DIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLK---GISGGQKKRLTTGELL 321
+++ +GL GD + +SGGQK+R+ L
Sbjct: 121 ----------------RARAMLEAVGL--------GDHLDYYPHNLSGGQKQRVAIARAL 156
Query: 322 VGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILL 381
V +++ DE + LDS + +++ ++ A + I ++ ++ D ++ +
Sbjct: 157 VHRPKLVLADEPTAALDSKSGRDVVELMQ--KLAREQGCTILIVTHDNRILDVADRIVHM 214
Query: 382 SEGQIV 387
+G+++
Sbjct: 215 EDGKLL 220
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 3e-04
Identities = 55/220 (25%), Positives = 91/220 (41%), Gaps = 26/220 (11%)
Query: 845 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGD------IYISGYPKRQE 898
L +++ + G TAL+G +G+GK+T+ + G++ D I + G +
Sbjct: 23 LNDISFSIPRGSWTALIGHNGSGKSTI-----SKLINGLLLPDDNPNSKITVDGITLTAK 77
Query: 899 TFARIS---GYCEQN-DIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELT 954
T I G QN D G TV + + F R E+ V +V+ V +
Sbjct: 78 TVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIK---IVRDVLADVGML 134
Query: 955 SLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNI 1014
+ P LS Q++R+ IA L P I+ +DE TS LD +++ +R +
Sbjct: 135 DYIDSE---PA--NLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKL 189
Query: 1015 VN-TGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGP 1053
T++ H ID D++L + G L P
Sbjct: 190 KKKNNLTVISITH--DIDEANMADQVLVLDDGKLLAQGSP 227
|
Length = 282 |
| >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.5 bits (102), Expect = 3e-04
Identities = 56/219 (25%), Positives = 97/219 (44%), Gaps = 18/219 (8%)
Query: 844 LLVNVTGAFRPGVLTALVGVSGAGKTTLM-------DVLAG-RKTGGIIEGDIYISGYPK 895
+L V+ F +T+L+G +G+GKTT + D ++G R +G ++ G I Y
Sbjct: 36 VLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRD 95
Query: 896 RQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVEL-T 954
E F R G Q P +++++++L A +R + + R + + V L
Sbjct: 96 VLE-FRRRVGMLFQRPNPFP-MSIMDNVL--AGVRAHKLVPRKEFRGVAQARLTEVGLWD 151
Query: 955 SLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNI 1014
++ L P LS Q++ L +A L NP ++ +DEPTS LD + +R++
Sbjct: 152 AVKDRLSDSP--FRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSL 209
Query: 1015 VNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGP 1053
+ I+ T + L F G L+ GP
Sbjct: 210 ADRLTVIIVTHNLAQAARISDRAALFF---DGRLVEEGP 245
|
Length = 276 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 44.4 bits (106), Expect = 3e-04
Identities = 49/180 (27%), Positives = 83/180 (46%), Gaps = 36/180 (20%)
Query: 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE 898
+ +L ++ + G AL+G +G GK+TL+ +L + +G+I ++G P
Sbjct: 350 DQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLT--RAWDPQQGEILLNGQP---- 403
Query: 899 TFARISGYCEQNDIHSPGLTVLESL--LFSAWLR------LPSEIELETQRAFVEEVMEL 950
I+ Y E + ++V+ LFSA LR P+ + + EV++
Sbjct: 404 ----IADYSEAALRQA--ISVVSQRVHLFSATLRDNLLLAAPNASDEA-----LIEVLQQ 452
Query: 951 VELTSLSGALIGLPGING--------LSTEQRKRLTIAVELVANPSIVFMDEPTSGLDAR 1002
V L L L G+N LS +++RL IA L+ + ++ +DEPT GLDA
Sbjct: 453 VGLEKL---LEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAE 509
|
Length = 574 |
| >gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 3e-04
Identities = 19/38 (50%), Positives = 25/38 (65%)
Query: 968 GLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAA 1005
GLS Q++RL +A L P I+ +DEPTS LD +A A
Sbjct: 182 GLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATA 219
|
Length = 286 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 4e-04
Identities = 56/234 (23%), Positives = 98/234 (41%), Gaps = 40/234 (17%)
Query: 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPP 208
ILDDL+ I ++ ++G SGK+TLL + SG++ NG + PP
Sbjct: 12 VILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFD---SGQVYLNG----QETPP 64
Query: 209 RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFM 268
S S+ RE L + Q + +I E + +E+LD+ +
Sbjct: 65 LNSKKASK--------FRREKLGYLFQ------NFALIEN----ETV-----EENLDLGL 101
Query: 269 KSFAL-GGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARV 327
K L +K E + K +GL+ + + +SGG+++R+ ++ P +
Sbjct: 102 KYKKLSKKEKREKKKEALEK-VGLNLKLKQKIYE-----LSGGEQQRVALARAILKPPPL 155
Query: 328 LFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILL 381
+ DE + LD +++ L G T+I ++ PE + D VI L
Sbjct: 156 ILADEPTGSLDPKNRDEVLDLLLELNDE--GKTII-IVTHDPEVAKQADRVIEL 206
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 4e-04
Identities = 58/258 (22%), Positives = 100/258 (38%), Gaps = 52/258 (20%)
Query: 146 SKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEF 205
K L +S ++ ++GP SGK+TL + +G SG + +G K++
Sbjct: 329 GKKPTLRGISFSLQAGEALAIIGPSGSGKSTLARLI---VGIWPPTSGSVRLDGADLKQW 385
Query: 206 VPP---RTSAYVSQQ----DWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGI 258
+ Y+ Q VAE R + + I E A K+AG+
Sbjct: 386 DRETFGKHIGYLPQDVELFPGTVAENIARFGENADPE---------KIIEAA---KLAGV 433
Query: 259 KPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTG 318
+L IL L DT++G +SGGQ++R+
Sbjct: 434 ---HEL-----------------------ILRLPDGYDTVIGPGG-ATLSGGQRQRIALA 466
Query: 319 ELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDV 378
L G +++ +DE ++ LD + +K +A T V+ +P+ D +
Sbjct: 467 RALYGDPKLVVLDEPNSNLDEEGEQALANAIKA-LKARGITVVVITHRPS--LLGCVDKI 523
Query: 379 ILLSEGQIVYQGPRVSVL 396
++L +G+I G R VL
Sbjct: 524 LVLQDGRIARFGERDEVL 541
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 4e-04
Identities = 57/207 (27%), Positives = 98/207 (47%), Gaps = 17/207 (8%)
Query: 845 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARIS 904
L N+ G ALVG SG+GK+T+ ++L + I EG+I + G+ R T A +
Sbjct: 359 LRNINFKIPAGKTVALVGRSGSGKSTIANLLT--RFYDIDEGEILLDGHDLRDYTLASLR 416
Query: 905 GYC---EQNDIHSPGLTVLESLLFSAWLRLP-SEIELETQRAFVEEVMELVELTSLSGAL 960
QN +H T+ ++ ++ + +IE + A+ M+ + + L
Sbjct: 417 NQVALVSQN-VHLFNDTIANNIAYARTEQYSREQIEEAARMAYA---MDFIN--KMDNGL 470
Query: 961 IGLPGING--LSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTG 1018
+ G NG LS QR+R+ IA L+ + I+ +DE TS LD + + + + +
Sbjct: 471 DTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAAL-DELQKN 529
Query: 1019 RTIVCTIHQPSIDIFESFDELLFMKRG 1045
RT + H+ S E DE+L ++ G
Sbjct: 530 RTSLVIAHRLS--TIEKADEILVVEDG 554
|
Length = 582 |
| >gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.6 bits (102), Expect = 4e-04
Identities = 50/179 (27%), Positives = 76/179 (42%), Gaps = 18/179 (10%)
Query: 857 LTALVGVSGAGKTTLM---DVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDI- 912
+TA +G SG GK+T + + L G EG+IY G R + + + +
Sbjct: 110 VTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVF 169
Query: 913 HSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGAL-------IGLPG 965
P T E +F P + R +E++ VE + S AL + G
Sbjct: 170 QKP--TPFEMSIFDNVAYGPRNNGI-NDRKILEKI---VEKSLKSAALWDEVKDDLDKAG 223
Query: 966 INGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCT 1024
N LS Q++RL IA + P ++ MDEPTS LD A A + + + I+ T
Sbjct: 224 -NALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIIIVT 281
|
Length = 329 |
| >gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.6 bits (102), Expect = 4e-04
Identities = 66/284 (23%), Positives = 111/284 (39%), Gaps = 44/284 (15%)
Query: 135 LRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGK 194
+R + NR+K +L DL+ I+ +++T +GP GK+T L L Q++
Sbjct: 83 IRNFNFWYMNRTK-HVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLN-------QLNDL 134
Query: 195 ITYNGH-GFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARRE 253
I H G F+ T + + E+ R + F S +D + R
Sbjct: 135 IEGTSHEGEIYFLGTNTRS----KKISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNN 190
Query: 254 KIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGL-DTCADTLVGDEMLKGISGGQK 312
I D I K +VE +K L D D L D+ +SGGQ+
Sbjct: 191 GI------NDRKILEK-----------IVEKSLKSAALWDEVKDDL--DKAGNALSGGQQ 231
Query: 313 KRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAY 372
+RL + VL MDE ++ LD T +I + + + ++I + +A
Sbjct: 232 QRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKY---SIIIVTHSMAQAQ 288
Query: 373 ELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFL 416
+ D+ + +G I G ++ F PK K D++
Sbjct: 289 RISDETVFFYQGWIEEAGETKTI--------FIHPKNKRTKDYI 324
|
Length = 329 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 4e-04
Identities = 47/182 (25%), Positives = 80/182 (43%), Gaps = 24/182 (13%)
Query: 853 RPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGY----CE 908
G + AL+G +GAGK+TLM ++AG G + I G P + T A+
Sbjct: 35 HAGEVHALLGGNGAGKSTLMKIIAGIVPPDS--GTLEIGGNPCARLTPAKAHQLGIYLVP 92
Query: 909 QNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMEL---VELTSLSGALIGLPG 965
Q + P L+V E++LF LP + + + + L ++L S +G+
Sbjct: 93 QEPLLFPNLSVKENILF----GLPK--RQASMQKMKQLLAALGCQLDLDSSAGS------ 140
Query: 966 INGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTI 1025
L R+ + I L+ + I+ +DEPT+ L + +R ++ G IV
Sbjct: 141 ---LEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFIS 197
Query: 1026 HQ 1027
H+
Sbjct: 198 HK 199
|
Length = 510 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 4e-04
Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 7/79 (8%)
Query: 969 LSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTI-HQ 1027
LS +++RL A L+ P VF+DE TS LD + + + ++ V ++ H+
Sbjct: 92 LSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQ----LLKELGITVISVGHR 147
Query: 1028 PSIDIFESFDELLFMKRGG 1046
PS+ F D +L + G
Sbjct: 148 PSLWKF--HDRVLDLDGEG 164
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.1 bits (101), Expect = 5e-04
Identities = 30/84 (35%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
Query: 307 ISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQ 366
+S GQKKR+ LV AR L +DE + GLD + Q+I ++ G VI
Sbjct: 137 LSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRI--VAQGNHVIISSH 194
Query: 367 PAPEAYELFDDVILLSEGQIVYQG 390
YE+ D V +L +GQI+ G
Sbjct: 195 DIDLIYEISDAVYVLRQGQILTHG 218
|
Length = 271 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.1 bits (101), Expect = 5e-04
Identities = 64/268 (23%), Positives = 111/268 (41%), Gaps = 49/268 (18%)
Query: 130 MTEALLR----QLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRL 185
MTE++ R QL + G T+ ++L+ I T ++GP GK+TLL L+ RL
Sbjct: 1 MTESVARLRGEQLTLGYGKY---TVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLS-RL 56
Query: 186 GHHLQVSGKITYNGHGFKEFVP---PRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSK 242
G + +G + + R ++Q ++TV+E + +G
Sbjct: 57 --MTPAHGHVWLDGEHIQHYASKEVARRIGLLAQNATTPGDITVQELV-----ARGRYPH 109
Query: 243 YDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDE 302
+ T R+E DE+ V M+ G+ T + D+
Sbjct: 110 QPLFTRW-RKE-------DEE-----------------AVTKAMQATGI-----THLADQ 139
Query: 303 MLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVI 362
+ +SGGQ++R +L ++ +DE + LD S +++ L R G T+
Sbjct: 140 SVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNRE-KGYTLA 198
Query: 363 SLLQPAPEAYELFDDVILLSEGQIVYQG 390
++L +A +I L EG+IV QG
Sbjct: 199 AVLHDLNQACRYASHLIALREGKIVAQG 226
|
Length = 265 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 5e-04
Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 4/86 (4%)
Query: 968 GLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQ 1027
LS Q++R+ +A L P + DEPT+GLD + ++ N+ G+TI+ H
Sbjct: 165 ELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTH- 223
Query: 1028 PSID-IFESFDELLFMKRGGELIYAG 1052
+D + E +F K G++I G
Sbjct: 224 -DLDNVLEWTKRTIFFKD-GKIIKDG 247
|
Length = 305 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.7 bits (100), Expect = 5e-04
Identities = 43/165 (26%), Positives = 74/165 (44%), Gaps = 28/165 (16%)
Query: 852 FRPGVLTALVGVSGAGKTTLMDVLAGRKT---GGIIEGDIYISG---YPKRQET--FARI 903
F +TAL+G SG GK+T + L G I G++ + G Y ++ +
Sbjct: 28 FNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQLRKQ 87
Query: 904 SGYCEQNDIHSPGLTVLESLLFSAWLR-------LPSEIELETQRAFV-EEVMELVELTS 955
G Q P ++ E++++ L L +E ++A + +EV + + ++
Sbjct: 88 VGMVFQQPNPFP-FSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESA 146
Query: 956 LSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLD 1000
LS LS Q++R+ IA L P ++ +DEPTS LD
Sbjct: 147 LS-----------LSGGQQQRVCIARVLAVKPDVILLDEPTSALD 180
|
Length = 252 |
| >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.7 bits (100), Expect = 5e-04
Identities = 46/189 (24%), Positives = 88/189 (46%), Gaps = 13/189 (6%)
Query: 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGI--IEGDIYISGYP-KRQET 899
Q L ++ +TAL+G SG GK+T + R I I+G + I G K Q+
Sbjct: 16 QALFDINMQIEQNKITALIGASGCGKSTFLRCF-NRMNDKIAKIDGLVEIEGKDVKNQDV 74
Query: 900 FA---RISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIE-LETQRAFVEEVMELVELTS 955
A + +Q ++ ++ E++ ++ +L I+ + + A V + ++ V L
Sbjct: 75 VALRKNVGMVFQQPNVFVK--SIYENISYAP--KLHGMIKNKDEEEALVVDCLQKVGLFE 130
Query: 956 LSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIV 1015
+ + LS Q++RL IA L P ++ +DEPTS LD ++ ++ ++ +
Sbjct: 131 EVKDKLKQNAL-ALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELS 189
Query: 1016 NTGRTIVCT 1024
+ I+ T
Sbjct: 190 HNLSMIMVT 198
|
Length = 246 |
| >gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.7 bits (100), Expect = 5e-04
Identities = 46/188 (24%), Positives = 79/188 (42%), Gaps = 36/188 (19%)
Query: 857 LTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYC--EQNDIHS 914
+TAL+G SG GK+T + L + ++EG +I G E +I+S
Sbjct: 35 ITALIGPSGCGKSTFLRTL--NRMNDLVEG--------------IKIEGNVIYEGKNIYS 78
Query: 915 PGLTVLE-------------SLLFSAWLRL---PSEIELETQRAFVEEVMELVELTSLSG 958
+LE L S + + P + ++ E V + ++ ++L
Sbjct: 79 NNFDILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWN 138
Query: 959 ALIGLPGINGLSTE--QRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVN 1016
+ N LS Q++RL IA L P+++ MDEPTS LD + + + N+
Sbjct: 139 EVKDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKE 198
Query: 1017 TGRTIVCT 1024
+ I+ T
Sbjct: 199 SYTIIIVT 206
|
Length = 254 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 43.8 bits (103), Expect = 5e-04
Identities = 61/242 (25%), Positives = 94/242 (38%), Gaps = 55/242 (22%)
Query: 151 LDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRT 210
L D++ I L ++G GKT+L+ A+ G L H S I +
Sbjct: 633 LSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVVIR------------GS 680
Query: 211 SAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREK-IAGIKPDEDLDIFMK 269
AYV Q W + TVRE + F GS + E R + I DLD+
Sbjct: 681 VAYVPQVSW-IFNATVRENILF-------GSDF----ESERYWRAIDVTALQHDLDLLP- 727
Query: 270 SFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLF 329
G D T +G+ + ISGGQK+R++ + + +
Sbjct: 728 --------------------GRDL---TEIGERGVN-ISGGQKQRVSMARAVYSNSDIYI 763
Query: 330 MDEISNGLDSSTTYQIIKY-LKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVY 388
D+ + LD+ +Q+ +K + V + L P L D +IL+SEG I
Sbjct: 764 FDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLP----LMDRIILVSEGMIKE 819
Query: 389 QG 390
+G
Sbjct: 820 EG 821
|
Length = 1495 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 43.3 bits (103), Expect = 6e-04
Identities = 48/182 (26%), Positives = 81/182 (44%), Gaps = 21/182 (11%)
Query: 853 RPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISG--YPKRQETFARISG--YCE 908
R G + + G+ GAG+T L L G + G+I + G R A +G Y
Sbjct: 283 RAGEILGIAGLVGAGRTELARALFGAR--PASSGEILLDGKPVRIRSPRDAIKAGIAYVP 340
Query: 909 QNDIHS----PGLTVLESLLFSAWLRLPSE--IELETQRAFVEEVMELVEL-TSLSGALI 961
D S +++ E++ ++ R I+ +RA E + + + T I
Sbjct: 341 -EDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPI 399
Query: 962 G-LPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRT 1020
G L G N Q+K + +A L +P ++ +DEPT G+D A A + R +R + G+
Sbjct: 400 GTLSGGN-----QQK-VVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKA 453
Query: 1021 IV 1022
I+
Sbjct: 454 IL 455
|
Length = 500 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 6e-04
Identities = 32/97 (32%), Positives = 52/97 (53%), Gaps = 1/97 (1%)
Query: 301 DEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTT 360
D++ + SGG ++RL LV R++FMDE + GLD S +++ L+ R L G
Sbjct: 146 DDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVREL-GLA 204
Query: 361 VISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVLD 397
V+ + A L D ++++ +GQ+V G VLD
Sbjct: 205 VVIVTHDLAVARLLADRLMVMKQGQVVESGLTDRVLD 241
|
Length = 258 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.6 bits (100), Expect = 6e-04
Identities = 70/265 (26%), Positives = 110/265 (41%), Gaps = 40/265 (15%)
Query: 130 MTEALLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHL 189
M + +R L++ G + +LD ++ I + +T L+GP SGK+TLL RL
Sbjct: 1 MNKIEIRDLKVSFGQ---VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVF-NRL---- 52
Query: 190 QVSGKITYNGHGFKEFVPPRTS--AYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMIT 247
+ + R S Y+ QD + +M V E + Q V + I
Sbjct: 53 ------------IELYPEARVSGEVYLDGQD--IFKMDVIE---LRRRVQMVFQIPNPIP 95
Query: 248 ELARREKIA-GIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKG 306
L+ E +A G+K L+ +KS ++ +E K D D L D
Sbjct: 96 NLSIFENVALGLK----LNRLVKSKKELQERVRWALE---KAQLWDEVKDRL--DAPAGK 146
Query: 307 ISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQ 366
+SGGQ++RL L VL DE + LD T +I + + T++ +
Sbjct: 147 LSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDM---TIVLVTH 203
Query: 367 PAPEAYELFDDVILLSEGQIVYQGP 391
+A + D V L +GQIV GP
Sbjct: 204 FPQQAARISDYVAFLYKGQIVEWGP 228
|
Length = 250 |
| >gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 6e-04
Identities = 46/199 (23%), Positives = 78/199 (39%), Gaps = 44/199 (22%)
Query: 830 VELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGI----IE 885
+E + V Q L +V+ +TA++G SG GK+T + + R I +E
Sbjct: 40 IEARDLNVFYGDEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCI-NRMNDLIDAARVE 98
Query: 886 GDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEI--------EL 937
G++ G + + D+ L ++F P I ++
Sbjct: 99 GELTFRG----KNVY--------DADVDPVALRRRIGMVFQKPNPFPKSIYDNVAYGLKI 146
Query: 938 ETQRAFVEEVMELVELTSLSGALI-----------GLPGINGLSTEQRKRLTIAVELVAN 986
+ ++E +E SL A + GL LS Q++RL IA + +
Sbjct: 147 QGYDGDIDERVE----ESLRRAALWDEVKDQLDSSGL----DLSGGQQQRLCIARAIAPD 198
Query: 987 PSIVFMDEPTSGLDARAAA 1005
P ++ MDEP S LD A +
Sbjct: 199 PEVILMDEPASALDPVATS 217
|
Length = 285 |
| >gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 6e-04
Identities = 48/185 (25%), Positives = 82/185 (44%), Gaps = 9/185 (4%)
Query: 853 RPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISG----YCE 908
RPG + A++G +G+GK+TL LAGR+ + G + G + + +G
Sbjct: 25 RPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEGIFMAF 84
Query: 909 QNDIHSPGLT---VLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPG 965
Q + PG++ L++ L + +R E + F + + E + L + L+
Sbjct: 85 QYPVEIPGVSNQFFLQTALNA--VRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSV 142
Query: 966 INGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTI 1025
G S ++KR I V P + +DE SGLD A IV V ++ + R+ +
Sbjct: 143 NVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVT 202
Query: 1026 HQPSI 1030
H I
Sbjct: 203 HYQRI 207
|
Length = 248 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 6e-04
Identities = 60/211 (28%), Positives = 96/211 (45%), Gaps = 34/211 (16%)
Query: 854 PGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIE---GDIYISGYPKRQETFARISGYCE 908
PG + ALVG +GAGK+T+M VL G + G I ++ +G QE A I
Sbjct: 29 PGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQE--AGIG---- 82
Query: 909 QNDIHS-----PGLTVLESLLF-----SAWLRLPSEIELETQRAFVEEVMELVELTSLSG 958
IH P LT+ E++ + + R I+ + A ++++ + L S
Sbjct: 83 --IIHQELNLIPQLTIAENIFLGREFVNRFGR----IDWKKMYAEADKLLARLNLRFSSD 136
Query: 959 ALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTG 1018
L+G LS +++ + IA L ++ MDEPT L + R +R + + G
Sbjct: 137 KLVG-----ELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQG 191
Query: 1019 RTIVCTIHQPSIDIFESFDELLFMKRGGELI 1049
R IV H+ +IFE D++ R G+ I
Sbjct: 192 RGIVYISHRLK-EIFEICDDVTVF-RDGQFI 220
|
Length = 501 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 7e-04
Identities = 40/190 (21%), Positives = 78/190 (41%), Gaps = 21/190 (11%)
Query: 847 NVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISG--------YPKRQE 898
+++ + G + G+ G+G+T LM+ L G G+I ++G ++
Sbjct: 281 DISFSVCRGEILGFAGLVGSGRTELMNCLFG--VDKRAGGEIRLNGKDISPRSPLDAVKK 338
Query: 899 TFARIS------GYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVE 952
A I+ G+ I + + + SL + ++ E EL+
Sbjct: 339 GMAYITESRRDNGFFPNFSI-AQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLA 397
Query: 953 LTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVR 1012
L S I LS ++++ I+ L P ++ DEPT G+D A A + + +R
Sbjct: 398 LKCHSVN----QNITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMR 453
Query: 1013 NIVNTGRTIV 1022
+ + G+ I+
Sbjct: 454 QLADDGKVIL 463
|
Length = 510 |
| >gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 7e-04
Identities = 49/190 (25%), Positives = 69/190 (36%), Gaps = 56/190 (29%)
Query: 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIE----GDIYISG-- 892
E ++ L V+ G A+VG SG GK+TL +L +IE G++Y G
Sbjct: 25 ERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLT------MIETPTGGELYYQGQD 78
Query: 893 ---YPKRQETFARI-------SGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRA 942
+ R + Y N G + E LL + L S E +R
Sbjct: 79 LLKADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSL---SAAE---RRE 132
Query: 943 FVEEVMELVELTSLSGALIGLPGINGLSTE------------QRKRLTIAVELVANPSIV 990
+M V GL E QR+R+ IA L+ +P +V
Sbjct: 133 KALAMMAKV----------------GLRPEHYDRYPHMFSGGQRQRIAIARALMLDPDVV 176
Query: 991 FMDEPTSGLD 1000
DEP S LD
Sbjct: 177 VADEPVSALD 186
|
Length = 327 |
| >gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.3 bits (99), Expect = 8e-04
Identities = 62/242 (25%), Positives = 101/242 (41%), Gaps = 43/242 (17%)
Query: 151 LDDLSGIIRPSRLTLLLGPPSSGKTTLLLAL--AGRLGHHLQVSGKITYNGHGFKEFVPP 208
L++++ I + +T L+GP GK+T L L L +++ G + Y G
Sbjct: 23 LNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKN------- 75
Query: 209 RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLD-IF 267
+ ++ + E+ + + F + S YD I+ KI G K + LD I
Sbjct: 76 -----IYSNNFDILELRRKIGMVFQTPNPFLMSIYDNIS---YGPKIHGTKDKKKLDEIV 127
Query: 268 MKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARV 327
+S +K++L E K L+T A +L SGGQ++RL L V
Sbjct: 128 EQSL----KKSALWNEVKDK---LNTNALSL---------SGGQQQRLCIARTLAIEPNV 171
Query: 328 LFMDEISNGLDSSTTYQI---IKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEG 384
+ MDE ++ LD +T +I I LK S T+I + +A + D G
Sbjct: 172 ILMDEPTSALDPISTGKIEELIINLKES------YTIIIVTHNMQQAGRISDRTAFFLNG 225
Query: 385 QI 386
I
Sbjct: 226 CI 227
|
Length = 254 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 8e-04
Identities = 56/235 (23%), Positives = 90/235 (38%), Gaps = 70/235 (29%)
Query: 845 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG---RKTGGIIEGDIYISG--------- 892
L NV G L+G +G+GK+TL+ L G +G II + I+
Sbjct: 23 LDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIR 82
Query: 893 --------YPKRQ---ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQR 941
YP+ Q ET + + N GL SE E+E +
Sbjct: 83 KKVGLVFQYPEYQLFEETIEKDIAFGPIN----LGL---------------SEEEIENR- 122
Query: 942 AFVEEVMELVELT----------SLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVF 991
V+ M +V L LSG Q++R+ IA + P I+
Sbjct: 123 --VKRAMNIVGLDYEDYKDKSPFELSGG-------------QKRRVAIAGVVAMEPKILI 167
Query: 992 MDEPTSGLDARAAAIVMRTVRNI-VNTGRTIVCTIHQPSIDIFESFDELLFMKRG 1045
+DEPT+GLD + ++ ++ + TI+ H D+ + D ++ M +G
Sbjct: 168 LDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSME-DVAKLADRIIVMNKG 221
|
Length = 287 |
| >gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 8e-04
Identities = 44/161 (27%), Positives = 72/161 (44%), Gaps = 30/161 (18%)
Query: 857 LTALVGVSGAGKTT-------LMDVLAGRKTGGII---EGDIYISGYPKRQETFARISGY 906
+TA++G SG GK+T +++++ KT G I + +I+ Y E G
Sbjct: 52 VTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSV--EELRTNVGM 109
Query: 907 CEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIG---- 962
Q P ++ +++ + +I + ++E++E SL GA I
Sbjct: 110 VFQKPNPFPK-SIYDNVTYGP------KIHGIKDKKTLDEIVE----KSLRGAAIWDELK 158
Query: 963 ---LPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLD 1000
GLS Q++RL IA L P ++ MDEPTS LD
Sbjct: 159 DRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALD 199
|
Length = 271 |
| >gnl|CDD|223912 COG0842, COG0842, ABC-type multidrug transport system, permease component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 42.2 bits (99), Expect = 8e-04
Identities = 35/221 (15%), Positives = 74/221 (33%), Gaps = 6/221 (2%)
Query: 487 LLKTSFNWQLLLMKRNSFIY-VFKFIQLLIVALITMTVFFRTTMHHKTIDDGGLYLGALY 545
L+ +Q+L+ I + I ++ + + R D ++
Sbjct: 35 FLRRLLEFQVLVDASALIIAPILYLIIFGLLFGLREGLSGRLYHWSNPSLDYLAFIVPGV 94
Query: 546 FSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFY-PSWVYTIPSWALSIPTSLIESGFWVA 604
M ++ F+ S L + R L + + + + +G +
Sbjct: 95 ILMSVLFSGIFSFSSALFREREFGTLERLLVSPVSRLFILLGKIVPYLVVASLIAGLVLL 154
Query: 605 VTYYVIGYDPNVVRFSRQLLLYFFLHQM-SIGLFRVIGSLGRNMIVANTFGSFAMLVVMA 663
V +++G LLL L ++GL + + A+ G+ +L +
Sbjct: 155 VIAFLLGVPFLGSLLLLLLLLLLLLLATVALGLL-LSTFAKSQLQCASAVGNLLILPLGF 213
Query: 664 LGGFIISRDSIPKWWIWGFWVSPLMYAQNAASVNEFLGHSW 704
L G + +P W +++PL YA +A + W
Sbjct: 214 LSGVFFPLELLPAWLQGISYINPLTYAIDA--LRYVYLGGW 252
|
Length = 286 |
| >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.9 bits (98), Expect = 9e-04
Identities = 62/291 (21%), Positives = 115/291 (39%), Gaps = 51/291 (17%)
Query: 131 TEALLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHL- 189
+ L QL ++ G + D+S + +T ++GP GK+T+L ++ R+ H L
Sbjct: 3 NKVKLEQLNVHFGKNHAVK---DVSMDFPENSVTAIIGPSGCGKSTVLRSI-NRM-HDLV 57
Query: 190 ---QVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMI 246
+V+GKI + T Y D V +++R + Q +
Sbjct: 58 PSARVTGKILLDD----------TDIY----DRGVDPVSIRRRVGMVFQKPNPFPAMSIY 103
Query: 247 TELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGL-DTCADTLVGDEMLK 305
+ K+ G + D +VE +K + L D D L + M
Sbjct: 104 DNVIAGYKLNGRVNRSEAD--------------EIVESSLKRVALWDEVKDRLKSNAME- 148
Query: 306 GISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLL 365
+SGGQ++RL + V+ MDE ++ LD +T +I + ++ + T+I +
Sbjct: 149 -LSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELK---EKYTIIIVT 204
Query: 366 QPAPEAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFL 416
+A + D G +V G + F+ P++K D++
Sbjct: 205 HNMQQAARVSDYTAFFYMGDLVECGETKKI--------FTTPEKKQTEDYI 247
|
Length = 252 |
| >gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Score = 41.8 bits (98), Expect = 9e-04
Identities = 54/194 (27%), Positives = 80/194 (41%), Gaps = 24/194 (12%)
Query: 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRK---TGGIIEGDIYISGYPKRQET 899
Q L VT RPG + L G SGAGK+TL+ ++ G + G I I+ R+
Sbjct: 16 QALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVP 75
Query: 900 FARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGA 959
F R D H LL + I L A +++ V S A
Sbjct: 76 FLRRQIGMIFQDHH---------LLMDRTVYDNVAIPLIIAGASGDDIRRRV-----SAA 121
Query: 960 L--IGL--PGIN---GLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVR 1012
L +GL N LS +++R+ IA +V P+++ DEPT LD + ++R
Sbjct: 122 LDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFE 181
Query: 1013 NIVNTGRTIVCTIH 1026
G T++ H
Sbjct: 182 EFNRVGVTVLMATH 195
|
Length = 222 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 0.001
Identities = 53/254 (20%), Positives = 103/254 (40%), Gaps = 61/254 (24%)
Query: 150 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPR 209
+L D++ I+P ++GP +GKTTL+ L G+I +G ++ R
Sbjct: 18 VLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQ---KGQILIDGIDIRDI--SR 72
Query: 210 TS-----AYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDL 264
S V Q + + T+ E + + + + E A K AG
Sbjct: 73 KSLRSMIGVVLQDTF-LFSGTIMENIRLGRP----NATDEEVIEAA---KEAGAH----- 119
Query: 265 DIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGP 324
++IMK L DT++G+ +S G+++ L ++
Sbjct: 120 ------------------DFIMK---LPNGYDTVLGENG-GNLSQGERQLLAIARAMLRD 157
Query: 325 ARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVI------SLLQPAPEAYELFDDV 378
++L +DE ++ +D+ T I + L+ + + G T I S ++ A D +
Sbjct: 158 PKILILDEATSNIDTETEKLIQEALE---KLMKGRTSIIIAHRLSTIKNA-------DKI 207
Query: 379 ILLSEGQIVYQGPR 392
++L +G+I+ +G
Sbjct: 208 LVLDDGKIIEEGTH 221
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 0.001
Identities = 58/277 (20%), Positives = 107/277 (38%), Gaps = 65/277 (23%)
Query: 127 IFNMTEALLRQLR-IYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRL 185
+++ L+ L+ +++ ++ L +S I + +GP +GKTT L L+G L
Sbjct: 12 VYSKEPGLIGSLKSLFKRKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLL 71
Query: 186 GHHLQVSGKITYNGHGFKEFVP-PRTSAYVSQ------QDWQVA-EMTVRETLDFAGQCQ 237
SG++ G VP R ++ + Q Q+ ++ V ++
Sbjct: 72 ---QPTSGEVRVAG-----LVPWKRRKKFLRRIGVVFGQKTQLWWDLPVIDSFYL----- 118
Query: 238 GVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADT 297
LA I + P F K LD ++
Sbjct: 119 -----------LAA---IYDLPPAR----FKKR--------------------LDELSEL 140
Query: 298 L-VGDEM---LKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHST 353
L + + + ++ +S GQ+ R L+ +LF+DE + GLD I +LK
Sbjct: 141 LDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYN 200
Query: 354 RALDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQG 390
R GTTV+ + L V+++ +G+++Y G
Sbjct: 201 R-ERGTTVLLTSHYMKDIEALARRVLVIDKGRLLYDG 236
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 42.1 bits (100), Expect = 0.001
Identities = 39/192 (20%), Positives = 75/192 (39%), Gaps = 38/192 (19%)
Query: 853 RPGVLTALVGVSGAGKTTLMDVLAG-RKTGGIIEGDIYISGYPKRQETFARIS-----GY 906
R G + + GV+G G++ L++ ++G RK G I ++G R Y
Sbjct: 282 RAGEIVGIAGVAGNGQSELVEAISGLRKP---ASGRILLNGKDVLGRLSPRERRRLGLAY 338
Query: 907 CEQNDIH---SPGLTVLESLLFSAWLRLPSE----IELETQRAFVEEVME---------L 950
++ L++ E+L+ + P ++ R F E++E
Sbjct: 339 VPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPD 398
Query: 951 VELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRT 1010
SLSG +++L +A EL P ++ +PT GLD A +
Sbjct: 399 APARSLSGG-------------NQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHER 445
Query: 1011 VRNIVNTGRTIV 1022
+ + + G+ ++
Sbjct: 446 LLELRDAGKAVL 457
|
Length = 501 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.8 bits (98), Expect = 0.001
Identities = 56/240 (23%), Positives = 99/240 (41%), Gaps = 39/240 (16%)
Query: 161 SRLTLLLGPPSSGKTTLLLALAGRLGHHL---QVSGKITYNGHGFKEFVPPRTSAYVSQQ 217
+++T ++GP GKTTLL ++ R+ H+ +V GKI + G +
Sbjct: 29 NQITAIIGPSGCGKTTLLRSI-NRMNDHIPGFRVEGKIYFKGQD------------IYDP 75
Query: 218 DWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQK 277
V E + + F S YD + A +I G+K LD
Sbjct: 76 QLDVTEYRKKVGMVFQKPTPFPMSIYDNV---AFGPRIHGVKSKHKLD------------ 120
Query: 278 TSLVVEYIMKILGL-DTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNG 336
+VE +K L D L ++ +SGGQ++RL L V+ +DE ++
Sbjct: 121 --RIVEESLKKAALWDEVKSEL--NKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSA 176
Query: 337 LDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVL 396
LD T +I K L+ + T++ + +A + D + + G+++ GP ++
Sbjct: 177 LDPIATQRIEKLLE---ELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREIV 233
|
Length = 250 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 41.4 bits (97), Expect = 0.001
Identities = 53/242 (21%), Positives = 89/242 (36%), Gaps = 52/242 (21%)
Query: 150 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPP- 208
IL+++S +R + GP GK+TLL +A + SG + + G P
Sbjct: 18 ILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLIS---PTSGTLLFEGEDVSTLKPEA 74
Query: 209 --RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDI 266
+ +Y +Q + TV + L F Q I +PD +
Sbjct: 75 YRQQVSYCAQTPALFGD-TVEDNLIFPWQ-------------------IRNRRPDRAAAL 114
Query: 267 -FMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLT-TGELLVGP 324
+ FAL + I+ + + +SGG+K+R+ L P
Sbjct: 115 DLLARFALP--------DSIL--------------TKNITELSGGEKQRIALIRNLQFMP 152
Query: 325 ARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEG 384
+L +DEI++ LD S I + + R + V+ + +A D VI L G
Sbjct: 153 K-ILLLDEITSALDESNKRNIEEMIHRYVREQN-VAVLWITHDKDQAIRHADKVITLQPG 210
Query: 385 QI 386
Sbjct: 211 HA 212
|
Length = 223 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 0.001
Identities = 59/269 (21%), Positives = 108/269 (40%), Gaps = 48/269 (17%)
Query: 130 MTEALLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHL 189
M ++G + L+ LS I ++G +GK+TLL A+AG L
Sbjct: 1 MISLSNATKTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDL---K 57
Query: 190 QVSGKITYNGHGFKEFVPPRTSAYVSQ--QDWQV---AEMTVRETLDFAGQCQGVGSKYD 244
SG+I +G + + + +++ QD E+T+ E L A
Sbjct: 58 PTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPELTIEENLALA----------- 106
Query: 245 MITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKI-LGLDTCADTLVGDEM 303
R K G+ S AL ++ S E + ++ LGL + + D +
Sbjct: 107 -----ESRGKKRGL-----------SSALNERRRSSFRERLARLGLGL----ENRLSDRI 146
Query: 304 LKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVI- 362
+SGGQ++ L+ + P ++L +DE + LD T +++ TT++
Sbjct: 147 GL-LSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMV 205
Query: 363 --SLLQPAPEAYELFDDVILLSEGQIVYQ 389
++ A + + +I+L G+IV
Sbjct: 206 THNMED----ALDYGNRLIMLHSGKIVLD 230
|
Length = 263 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.9 bits (98), Expect = 0.001
Identities = 62/232 (26%), Positives = 94/232 (40%), Gaps = 59/232 (25%)
Query: 852 FRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQND 911
F LTAL+G SG GK+T + L + IE +I I+G K E +
Sbjct: 27 FEEKELTALIGPSGCGKSTFLRCL--NRMNDDIE-NIKITGEIK-----------FEGQN 72
Query: 912 IHSPGLTVLE-----SLLFSAWLRLPSEI----------------ELETQRAFVEEVMEL 950
I+ + ++E ++F P + EL QR VEE
Sbjct: 73 IYGSKMDLVELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQR--VEE---- 126
Query: 951 VELTSLSGALIGLPGINGL-------STEQRKRLTIAVELVANPSIVFMDEPTSGLDARA 1003
SL A I + L S Q++R+ IA L P +V +DEPTS LD +
Sbjct: 127 ----SLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPIS 182
Query: 1004 AAIVMRTVRNIVNTGRTIVCT--IHQPSIDIFESFDELLFMKRGGELIYAGP 1053
++ + T+ + + I+ T + Q D+ F+ G+LI AGP
Sbjct: 183 SSEIEETLMELKHQYTFIMVTHNLQQAG----RISDQTAFLM-NGDLIEAGP 229
|
Length = 251 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 42.7 bits (100), Expect = 0.001
Identities = 20/60 (33%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 969 LSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTG-RTIVCTIHQ 1027
LS Q++R+ IA L+ P I+ +DE TS LD+ + ++ +T+ +I + +TI+ H+
Sbjct: 1359 LSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHR 1418
|
Length = 1466 |
| >gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter proteins | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.001
Identities = 32/196 (16%), Positives = 57/196 (29%), Gaps = 61/196 (31%)
Query: 852 FRPGVLTALVGVSGAGKTTLMD---VLAGRKTGGIIEGDIYISGYPKRQETFARISGYCE 908
F G LT + G +G+GK+T++D + G +G + I
Sbjct: 18 FGEGSLTIITGPNGSGKSTILDAIGLALGGAQSATRRRSGVKAGCIVAAVSAELI----- 72
Query: 909 QNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGING 968
LSG G
Sbjct: 73 ------------------------------------------FTRLQLSG---------G 81
Query: 969 LSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQP 1028
L +A+ + + +DE GLD R + + + G ++ H P
Sbjct: 82 EKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHLP 141
Query: 1029 SIDIFESFDELLFMKR 1044
++ E D+L+ +K+
Sbjct: 142 --ELAELADKLIHIKK 155
|
ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. Length = 162 |
| >gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 0.001
Identities = 46/165 (27%), Positives = 74/165 (44%), Gaps = 34/165 (20%)
Query: 860 LVGVSGAGKTTLMDVLAGRKT--GG--IIEGDIYISGY---PKRQET---FARIS-GYCE 908
LVG +GAGK+TLM +L G G I E D+ ++ P R + ++ G E
Sbjct: 34 LVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDLIVARLQQDPPRNVEGTVYDFVAEGIEE 93
Query: 909 QNDIHSPGLTVLESLLFSAWLRL----PSEIELETQRAFVEEVMELVELTSLSG------ 958
Q + L+ + L PSE L + A ++E ++ L L
Sbjct: 94 QAE-------YLKR--YHDISHLVETDPSEKNLN-ELAKLQEQLDHHNLWQLENRINEVL 143
Query: 959 ALIGLPG---INGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLD 1000
A +GL ++ LS ++ + LV+NP ++ +DEPT+ LD
Sbjct: 144 AQLGLDPDAALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLD 188
|
Length = 635 |
| >gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 0.001
Identities = 34/112 (30%), Positives = 55/112 (49%), Gaps = 21/112 (18%)
Query: 288 ILGLDTCADTLVGDE--MLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQI 345
IL L DT VG+ ML SGGQK+R++ L+ A +L +D+ + +D T +QI
Sbjct: 434 ILRLPQGYDTEVGERGVML---SGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQI 490
Query: 346 IKYLKHSTRALDGTTVI------SLLQPAPEAYELFDDVILLSEGQIVYQGP 391
+ L+ + +G TVI S L A +++++ G I +G
Sbjct: 491 LHNLR---QWGEGRTVIISAHRLSALTEA-------SEILVMQHGHIAQRGN 532
|
Length = 569 |
| >gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 0.001
Identities = 56/213 (26%), Positives = 97/213 (45%), Gaps = 28/213 (13%)
Query: 845 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARIS 904
L NV +PG + + G +G+GK+TL+ ++ ++ + EGDI P ++
Sbjct: 331 LENVNFTLKPGQMLGICGPTGSGKSTLLSLI--QRHFDVSEGDIRFHDIP-----LTKL- 382
Query: 905 GYCEQNDIHSPGLTVLES--LLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIG 962
Q D L V+ LFS + + I L A +E+ + L S+ ++
Sbjct: 383 ----QLDSWRSRLAVVSQTPFLFSD--TVANNIALGRPDATQQEIEHVARLASVHDDILR 436
Query: 963 LP-------GING--LSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRN 1013
LP G G LS Q++R++IA L+ N I+ +D+ S +D R ++ +R
Sbjct: 437 LPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQ 496
Query: 1014 IVNTGRTIVCTIHQPSIDIFESFDELLFMKRGG 1046
GRT++ + H+ S E+L M+ G
Sbjct: 497 W-GEGRTVIISAHRLS--ALTEASEILVMQHGH 526
|
Length = 569 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 0.001
Identities = 45/190 (23%), Positives = 86/190 (45%), Gaps = 37/190 (19%)
Query: 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFAR 902
++L +++ +F PG ++G++GAGK+TL+ ++AG ++ + +G +
Sbjct: 19 EILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAG------VDKE--FNGEARPAPGIKV 70
Query: 903 ISGYCEQNDIHSPGLTVLESLL---------------FSAWLRLPSE--IELETQRAFVE 945
GY Q P TV E++ SA P L ++A ++
Sbjct: 71 --GYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQ 128
Query: 946 EVMELVELTSLSG-------ALIGLPG---INGLSTEQRKRLTIAVELVANPSIVFMDEP 995
E+++ + L AL P + LS +R+R+ + L++ P ++ +DEP
Sbjct: 129 EIIDAADAWDLDRKLEIAMDALRCPPWDADVTKLSGGERRRVALCRLLLSKPDMLLLDEP 188
Query: 996 TSGLDARAAA 1005
T+ LDA + A
Sbjct: 189 TNHLDAESVA 198
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 0.001
Identities = 19/64 (29%), Positives = 35/64 (54%)
Query: 967 NGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIH 1026
+ LS Q++R++IA L+ ++ DEPT LD+ + VM + + + G T++ H
Sbjct: 143 SQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTH 202
Query: 1027 QPSI 1030
P +
Sbjct: 203 DPQV 206
|
Length = 648 |
| >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.4 bits (97), Expect = 0.001
Identities = 48/184 (26%), Positives = 83/184 (45%), Gaps = 13/184 (7%)
Query: 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKT-GGIIEGDIYISGYPKRQ 897
++Q L V+ G + L+G +GAGKTTL+ L G R T G I+ I+ + +
Sbjct: 17 KIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAK 76
Query: 898 ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLS 957
++ E + S +TV E+L + +E + +R ++ V EL L
Sbjct: 77 IMREAVAIVPEGRRVFSR-MTVEENLAMGGFF---AERDQFQER--IKWVYEL--FPRLH 128
Query: 958 GALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNT 1017
I G +S +++ L I L++ P ++ +DEP+ GL + T+ +
Sbjct: 129 ERRIQRAGT--MSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQ 186
Query: 1018 GRTI 1021
G TI
Sbjct: 187 GMTI 190
|
Length = 237 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 40.0 bits (93), Expect = 0.001
Identities = 38/202 (18%), Positives = 60/202 (29%), Gaps = 65/202 (32%)
Query: 854 PGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIH 913
PG + +VG G+GKTTL LA I G
Sbjct: 1 PGEVILIVGPPGSGKTTLARALARE--------------LGPPGGGVIYIDG-------- 38
Query: 914 SPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQ 973
E LE + ++ + S SG L
Sbjct: 39 --------------------EDILEEVLDQLLLIIVGGKKASGSGELR-----------L 67
Query: 974 RKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVN------TGRTIVCTIHQ 1027
R L +A +L P ++ +DE TS LDA A+++ + T++ T +
Sbjct: 68 RLALALARKL--KPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTND 125
Query: 1028 PSI----DIFESFDELLFMKRG 1045
+ FD + +
Sbjct: 126 EKDLGPALLRRRFDRRIVLLLI 147
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 40.5 bits (96), Expect = 0.001
Identities = 40/182 (21%), Positives = 70/182 (38%), Gaps = 59/182 (32%)
Query: 853 RPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQET--------FARIS 904
R G + + G+ G G+T L + L G + G+I + G P + + A +
Sbjct: 24 RAGEIVGIAGLVGNGQTELAEALFGLRP--PASGEITLDGKPVTRRSPRDAIRAGIAYVP 81
Query: 905 GYCEQNDIHS----PGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGAL 960
D L+V E++ S+ L SG
Sbjct: 82 E-----DRKREGLVLDLSVAENIALSSLL---------------------------SG-- 107
Query: 961 IGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRT 1020
G N Q+K + +A L +P ++ +DEPT G+D A A + R +R + + G+
Sbjct: 108 ----G-N-----QQK-VVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKA 156
Query: 1021 IV 1022
++
Sbjct: 157 VL 158
|
This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 182 |
| >gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.4 bits (97), Expect = 0.001
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 969 LSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIH 1026
LS Q++RL IA + P+++ MDEP S LD A ++ ++ + TI+ H
Sbjct: 150 LSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQEL-KKNFTIIVVTH 206
|
Length = 251 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 40.9 bits (97), Expect = 0.002
Identities = 54/228 (23%), Positives = 95/228 (41%), Gaps = 56/228 (24%)
Query: 172 SGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPP---RTSAYVSQQDWQVAEMTVRE 228
SGK++LLLAL RL SG I +G + + R+ + QD + T+R
Sbjct: 41 SGKSSLLLALF-RLVE--LSSGSILIDGVDISK-IGLHDLRSRISIIPQDPVLFSGTIRS 96
Query: 229 TLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKI 288
LD G+ DE+L AL + + E++ +
Sbjct: 97 NLDPFGEY-----------------------SDEELWQ-----AL---ERVGLKEFVESL 125
Query: 289 LGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKY 348
G DT+V +E + +S GQ++ L L+ +++L +DE + +D T I K
Sbjct: 126 PGGL---DTVV-EEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKT 181
Query: 349 LKHSTRALDGTTVISLLQPAPEAYEL-----FDDVILLSEGQIVYQGP 391
++ A TV+++ A+ L D +++L +G++V
Sbjct: 182 IRE---AFKDCTVLTI------AHRLDTIIDSDRILVLDKGRVVEFDS 220
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.002
Identities = 49/198 (24%), Positives = 72/198 (36%), Gaps = 53/198 (26%)
Query: 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPP 208
IL+++S +R L+ GP GK+TLL +A + SG + + G P
Sbjct: 21 KILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLIS---PTSGTLLFEGEDISTLKPE 77
Query: 209 RTSAYVS--QQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDI 266
VS Q + TV + L F Q I +PD I
Sbjct: 78 IYRQQVSYCAQTPTLFGDTVYDNLIFPWQ-------------------IRNQQPDP--AI 116
Query: 267 FMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEML-KGI---SGGQKKRLTTGELLV 322
F+ L D +L K I SGG+K+R++ L
Sbjct: 117 FLDDLER---------------FALP--------DTILTKNIAELSGGEKQRISLIRNLQ 153
Query: 323 GPARVLFMDEISNGLDSS 340
+VL +DEI++ LD S
Sbjct: 154 FMPKVLLLDEITSALDES 171
|
Length = 225 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 0.002
Identities = 26/87 (29%), Positives = 47/87 (54%), Gaps = 2/87 (2%)
Query: 307 ISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQ 366
+SGGQ +++ +L ++ +DE + GLD + Q+++ LK S + + T+I +
Sbjct: 146 MSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLK-SLQTDENKTIILVSH 204
Query: 367 PAPEAYELFDDVILLSEGQIVYQG-PR 392
E D+VI++ EG IV Q P+
Sbjct: 205 DMNEVARYADEVIVMKEGSIVSQTSPK 231
|
Length = 286 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 41.9 bits (98), Expect = 0.002
Identities = 52/225 (23%), Positives = 93/225 (41%), Gaps = 37/225 (16%)
Query: 844 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARI 903
+L ++ P +VG +GAGK+++++ L + + +G I I
Sbjct: 1251 VLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALF--RIVELEKGRIMIDDC---------- 1298
Query: 904 SGYCEQNDIHSPGLTVLES---------LLFSAWLRLPSEIELETQRAFVEEVMELVELT 954
D+ GLT L +LFS +R + E A + E +E +
Sbjct: 1299 -------DVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFSEHNDADLWEALERAHIK 1351
Query: 955 S-LSGALIGL-----PGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVM 1008
+ GL G S QR+ L++A L+ I+ +DE T+ +D R +++
Sbjct: 1352 DVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQ 1411
Query: 1009 RTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGP 1053
RT+R + T++ H+ + I D++L + G L Y P
Sbjct: 1412 RTIREEFKSC-TMLVIAHRLNTII--DCDKILVLSSGQVLEYDSP 1453
|
Length = 1495 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 0.002
Identities = 55/236 (23%), Positives = 96/236 (40%), Gaps = 44/236 (18%)
Query: 126 FIFNMTEALLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRL 185
+I+ M R ++ + IL D+S P +LG +GK+TLL +AG
Sbjct: 3 YIYTMN----RVSKVVPPKK---EILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAG-- 53
Query: 186 GHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDM 245
+ +G P Y+ Q+ TVRE ++ +GV D
Sbjct: 54 ---------VDKEFNGEARPAPGIKVGYLPQEPQLDPTKTVRENVE-----EGVAEIKDA 99
Query: 246 ITEL-ARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILG-------LDTCADT 297
+ K A +PD D+D AL ++ L + I+ L+ D
Sbjct: 100 LDRFNEISAKFA--EPDADMD------ALLAEQAEL--QEIIDAADAWDLDRKLEIAMDA 149
Query: 298 L---VGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLK 350
L D + +SGG+++R+ LL+ +L +DE +N LD+ + + ++L+
Sbjct: 150 LRCPPWDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQ 205
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 0.002
Identities = 47/156 (30%), Positives = 78/156 (50%), Gaps = 27/156 (17%)
Query: 855 GVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDI-- 912
G + L+G SG GKTT++ ++AG + EG I+I G E S +Q DI
Sbjct: 32 GTMVTLLGPSGCGKTTVLRLVAGLEKP--TEGQIFIDG-----EDVTHRS--IQQRDICM 82
Query: 913 --HS----PGLTVLESLLFS-AWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPG 965
S P +++ E++ + L +P E E + + V+E +ELV+L +
Sbjct: 83 VFQSYALFPHMSLGENVGYGLKMLGVPKE-ERKQR---VKEALELVDLAGFEDRYV---- 134
Query: 966 INGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDA 1001
+ +S Q++R+ +A L+ P ++ DEP S LDA
Sbjct: 135 -DQISGGQQQRVALARALILKPKVLLFDEPLSNLDA 169
|
Length = 351 |
| >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.2 bits (96), Expect = 0.002
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 969 LSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNI-VNTGRTIVCTIH 1026
LS Q++RL IA L P ++ MDEP GLD A+ V ++++ + + T+V H
Sbjct: 151 LSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSH 209
|
Length = 261 |
| >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.2 bits (96), Expect = 0.002
Identities = 56/229 (24%), Positives = 96/229 (41%), Gaps = 33/229 (14%)
Query: 150 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLAL--AGRLGHHLQVSGKITYNGHGFKEFVP 207
IL+ +S I S++T ++GP GK+T L L L ++V G++ + E
Sbjct: 22 ILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYE--- 78
Query: 208 PRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIF 267
+++ QV+ + + L F S YD +A KI G +P ++D
Sbjct: 79 --RRVNLNRLRRQVSMVHPKPNL-FPM------SVYD---NVAYGVKIVGWRPKLEIDDI 126
Query: 268 MKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARV 327
++S AL +++ + LD +SGGQ++RL L +V
Sbjct: 127 VES-ALKDADLWDEIKHKIHKSALD--------------LSGGQQQRLCIARALAVKPKV 171
Query: 328 LFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFD 376
L MDE GLD + + ++ L S R T++ + + L D
Sbjct: 172 LLMDEPCFGLDPIASMK-VESLIQSLRLRSELTMVIVSHNLHQVSRLSD 219
|
Length = 261 |
| >gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.1 bits (96), Expect = 0.002
Identities = 52/232 (22%), Positives = 98/232 (42%), Gaps = 15/232 (6%)
Query: 845 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG---RKTGGIIEGDIYISGYPKRQETFA 901
L N + F+ +T ++G +G+GK+T++ + G +TG I GD I K+ +
Sbjct: 27 LNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKEVK 86
Query: 902 RIS---GYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSG 958
R+ G Q P + + + P + Q A+ ++V EL++L L
Sbjct: 87 RLRKEIGLVFQ----FPEYQLFQETIEKDIAFGPVNLGENKQEAY-KKVPELLKLVQLPE 141
Query: 959 ALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNI-VNT 1017
+ LS Q++R+ +A + + + + +DEPT GLD + + +
Sbjct: 142 DYVKRSPFE-LSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEY 200
Query: 1018 GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGSKS-CELIKYFEVE 1068
+ I+ H + DE++ M G + P S EL+ E++
Sbjct: 201 KKRIIMVTHNMD-QVLRIADEVIVMHEGKVISIGSPFEIFSNQELLTKIEID 251
|
Length = 289 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.3 bits (94), Expect = 0.003
Identities = 45/191 (23%), Positives = 84/191 (43%), Gaps = 28/191 (14%)
Query: 826 VDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRK---TGG 882
+ + +E K + Q L ++ +TAL+G SG GK+T + L +
Sbjct: 1 MKIKMESKNLNLWYGEKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNV 60
Query: 883 IIEGDIYISG---YPKRQETFA--RISGYCEQNDIHSPGLTVLESLLFSAWLR-LPSEIE 936
IEG++ + G Y K + + G Q P +++ +++ + + + + E
Sbjct: 61 KIEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKPNPFP-MSIYDNVAYGPRIHGIKDKKE 119
Query: 937 LE-------TQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSI 989
L+ + A +EV + ++ ++L LS Q++RL IA + P +
Sbjct: 120 LDKIVEWALKKAALWDEVKDDLKKSAL-----------KLSGGQQQRLCIARTIAVKPDV 168
Query: 990 VFMDEPTSGLD 1000
+ MDEPTS LD
Sbjct: 169 ILMDEPTSALD 179
|
Length = 251 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.003
Identities = 58/251 (23%), Positives = 103/251 (41%), Gaps = 54/251 (21%)
Query: 147 KLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQ--VSGKITYNGHGF-K 203
T++D+L+ I+ + LLGP GKTT+L +AG L+ G+I +G
Sbjct: 18 SNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAG-----LEKPTEGQIFIDGEDVTH 72
Query: 204 EFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDED 263
+ R V Q M++ E + + + GV E +R K A
Sbjct: 73 RSIQQRDICMVFQSYALFPHMSLGENVGYGLKMLGVPK-----EERKQRVKEA------- 120
Query: 264 LDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVG 323
++++ L D V D+ ISGGQ++R+ L+
Sbjct: 121 ----------------------LELVDLAGFEDRYV-DQ----ISGGQQQRVALARALIL 153
Query: 324 PARVLFMDEISNGLDSSTTYQIIKYLKHSTRALD---GTTVISLLQPAPEAYELFDDVIL 380
+VL DE + LD++ + + ++ R L T + + EA+ + D VI+
Sbjct: 154 KPKVLLFDEPLSNLDAN----LRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIV 209
Query: 381 LSEGQIVYQGP 391
+++G+I+ G
Sbjct: 210 MNKGKIMQIGS 220
|
Length = 351 |
| >gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 0.003
Identities = 39/168 (23%), Positives = 65/168 (38%), Gaps = 27/168 (16%)
Query: 850 GAFRPGVLTALVGVSGAGKTTLMDVLAGR--KTGGIIEGDIYISGYPKRQETFARISGYC 907
G+ + ++G +G GKTT + +LAG G IE ++ Y K Q A G
Sbjct: 20 GSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSY-KPQYIKADYEG-- 76
Query: 908 EQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGIN 967
TV LL S T F E+ + +++ + +
Sbjct: 77 ----------TV-RDLLSS---ITKD---FYTHPYFKTEIAKPLQIEQILDRE-----VP 114
Query: 968 GLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIV 1015
LS + +R+ IA L + I +DEP++ LD + + +R
Sbjct: 115 ELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFA 162
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246 |
| >gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 40.6 bits (96), Expect = 0.003
Identities = 55/179 (30%), Positives = 81/179 (45%), Gaps = 44/179 (24%)
Query: 848 VTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYC 907
+ G LVG SG GK+TL+ ++AG + I G+I+I G R+
Sbjct: 23 IDLDVADGEFIVLVGPSGCGKSTLLRMVAGLER--ITSGEIWIGG---------RVVNEL 71
Query: 908 E----------QNDIHSPGLTVLESLLFSAW-LR---LP-SEIELETQRAFVEEVMELVE 952
E QN P ++V E++ A+ L+ +P +EIE +R V E ++E
Sbjct: 72 EPADRDIAMVFQNYALYPHMSVRENM---AYGLKIRGMPKAEIE---ER--VAEAARILE 123
Query: 953 LTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDA--RAAAIVMR 1009
L L L P LS QR+R+ + +V P++ DEP S LDA R MR
Sbjct: 124 LEPL---LDRKP--RELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQ---MR 174
|
Length = 356 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 0.004
Identities = 56/253 (22%), Positives = 101/253 (39%), Gaps = 58/253 (22%)
Query: 151 LDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGH----GFKEFV 206
L+DLS + P L +L+GP +GKTTL+ + G+ G++ ++G E
Sbjct: 21 LNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTR---PQEGEVLFDGDTDLTKLPEH- 76
Query: 207 PPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDI 266
++A G+G K+ T + E+L++
Sbjct: 77 -------------RIARA-------------GIGRKFQKPTVFE------NLTVRENLEL 104
Query: 267 FMKS----FA-LGGQKTS---LVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTG 318
+ FA L + + ++ ++ +GL D L +S GQK+ L G
Sbjct: 105 ALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAAL-----LSHGQKQWLEIG 159
Query: 319 ELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELF-DD 377
LL ++L +DE G+ + T + + LK +L G I +++ D
Sbjct: 160 MLLAQDPKLLLLDEPVAGMTDAETEKTAELLK----SLAGKHSILVVEHDMGFVREIADK 215
Query: 378 VILLSEGQIVYQG 390
V +L EG ++ +G
Sbjct: 216 VTVLHEGSVLAEG 228
|
Length = 249 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 39.8 bits (93), Expect = 0.004
Identities = 40/209 (19%), Positives = 75/209 (35%), Gaps = 43/209 (20%)
Query: 150 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPP- 208
+L +++ I + L+GP GK+TLL + G L +G++ N + +P
Sbjct: 17 LLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRL-DMLPAA 75
Query: 209 -RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIF 267
R + Q ++V + L FA +
Sbjct: 76 QRQIGILFQDALLFPHLSVGQNLLFA------------------------LPAT------ 105
Query: 268 MKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARV 327
+K G + + + + GLD + +SGGQ+ R+ L+ +
Sbjct: 106 LK----GNARRNAANAALERS-GLDGAF-----HQDPATLSGGQRARVALLRALLAQPKA 155
Query: 328 LFMDEISNGLDSSTTYQIIKYLKHSTRAL 356
L +DE + LD + Q +++ RA
Sbjct: 156 LLLDEPFSRLDVALRDQFRQWVFSEVRAA 184
|
Length = 213 |
| >gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Score = 39.8 bits (94), Expect = 0.004
Identities = 45/199 (22%), Positives = 79/199 (39%), Gaps = 64/199 (32%)
Query: 151 LDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGH---GFKEFVP 207
L+DLS + P L +++GP +GKTT++ + G+ G + + G G E
Sbjct: 18 LNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTR---PDEGSVLFGGTDLTGLPEH-- 72
Query: 208 PRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPD----ED 263
Q+A G+G K+ + + + E+
Sbjct: 73 ------------QIARA-------------GIGRKF----------QKPTVFENLTVFEN 97
Query: 264 LDIFMKS----FAL------GGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKK 313
L++ + FA +K +E +++ +GL AD L G +S GQK+
Sbjct: 98 LELALPRDKSVFASLFFRLSAEEKDR--IEEVLETIGLADEADRLAGL-----LSHGQKQ 150
Query: 314 RLTTGELLVGPARVLFMDE 332
L G LL+ ++L +DE
Sbjct: 151 WLEIGMLLMQDPKLLLLDE 169
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 0.004
Identities = 34/111 (30%), Positives = 55/111 (49%), Gaps = 8/111 (7%)
Query: 288 ILGLDTCADTLVGD--EMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQI 345
IL L DT +G+ L SGGQ++R+ L G ++ +DE ++ LDS +
Sbjct: 455 ILRLPQGYDTRIGEGGATL---SGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAAL 511
Query: 346 IKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVL 396
+ +A GT V+ +P+ A D +++L +G+I GPR VL
Sbjct: 512 AAAILA-AKARGGTVVVIAHRPS--ALASVDKILVLQDGRIAAFGPREEVL 559
|
Length = 580 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 40.6 bits (95), Expect = 0.004
Identities = 27/82 (32%), Positives = 44/82 (53%), Gaps = 4/82 (4%)
Query: 306 GISGG-QKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISL 364
+SGG Q+K + LL P RVL +DE + G+D Y+I K + + A +G +I +
Sbjct: 403 RLSGGNQQKAVLAKMLLTNP-RVLILDEPTRGVDVGAKYEIYKLI--NQLAQEGVAIIVV 459
Query: 365 LQPAPEAYELFDDVILLSEGQI 386
E L D V+++ EG++
Sbjct: 460 SSELAEVLGLSDRVLVIGEGKL 481
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 39.8 bits (93), Expect = 0.004
Identities = 50/198 (25%), Positives = 83/198 (41%), Gaps = 35/198 (17%)
Query: 151 LDDLSGIIRPSRLTLLLGPPSSGKTTLLLAL--AGRLGHHLQVSGKITYNGHGFKEFVPP 208
L ++ I ++T L+GP GK+TLL L L ++++GK+T +G
Sbjct: 19 LKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDI------ 72
Query: 209 RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFM 268
+ VA++ ++ + F S Y+ + A + GIK + LD
Sbjct: 73 -------YGNIDVADLRIKVGMVFQKPNPFPMSIYENV---AYGLRAQGIKDKKVLD--- 119
Query: 269 KSFALGGQKTSLVVEYIMKILGL-DTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARV 327
VVE ++ L D D L G+SGGQ++RL + V
Sbjct: 120 -----------EVVERSLRGAALWDEVKDRL--KSHAFGLSGGQQQRLCIARTIAMEPDV 166
Query: 328 LFMDEISNGLDSSTTYQI 345
+ MDE ++ LD T++I
Sbjct: 167 ILMDEPTSALDPIATHKI 184
|
Length = 249 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 38.5 bits (89), Expect = 0.004
Identities = 24/96 (25%), Positives = 33/96 (34%), Gaps = 17/96 (17%)
Query: 160 PSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDW 219
P + L++GPP SGKTTL ALA LG G G V Q
Sbjct: 1 PGEVILIVGPPGSGKTTLARALARELG----------PPGGGVIYIDGEDILEEVLDQLL 50
Query: 220 QVAEMTVRETLDFAGQCQGVGSKYDMITELARREKI 255
+ + + + + LAR+ K
Sbjct: 51 LIIVGGKKASGSGELRLRL-------ALALARKLKP 79
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.1 bits (94), Expect = 0.004
Identities = 51/188 (27%), Positives = 82/188 (43%), Gaps = 36/188 (19%)
Query: 162 RLTLLLGPPSSGKTTLLLALAGRLGHHL---QVSGKITYNGHGFKEFVPPRTSAYVSQQD 218
++T L+GP SGK+T L +L R+ + +V+G+I Y G +++++
Sbjct: 47 KITALIGPSGSGKSTYLRSL-NRMNDTIDIARVTGQILYRG------------IDINRKE 93
Query: 219 WQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKT 278
V EM + F S Y+ IT R AG+K + LD
Sbjct: 94 INVYEMRKHIGMVFQRPNPFAKSIYENITFALER---AGVKDKKVLD------------- 137
Query: 279 SLVVEYIMKILGL-DTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGL 337
+VE +K L D D L + +SGGQ++RL + +L MDE ++ L
Sbjct: 138 -EIVETSLKQAALWDQVKDDL--HKSALTLSGGQQQRLCIARAIAVKPDILLMDEPASAL 194
Query: 338 DSSTTYQI 345
D +T Q+
Sbjct: 195 DPISTMQL 202
|
Length = 267 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1085 | |||
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| KOG0061 | 613 | consensus Transporter, ABC superfamily (Breast can | 100.0 | |
| TIGR00955 | 617 | 3a01204 The Eye Pigment Precursor Transporter (EPP | 100.0 | |
| PLN03211 | 659 | ABC transporter G-25; Provisional | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 100.0 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 100.0 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 100.0 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 100.0 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 100.0 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 100.0 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 100.0 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 100.0 | |
| KOG0061 | 613 | consensus Transporter, ABC superfamily (Breast can | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| PLN03211 | 659 | ABC transporter G-25; Provisional | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| TIGR00955 | 617 | 3a01204 The Eye Pigment Precursor Transporter (EPP | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 100.0 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| COG4152 | 300 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4525 | 259 | TauB ABC-type taurine transport system, ATPase com | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| COG4181 | 228 | Predicted ABC-type transport system involved in ly | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03232 | 192 | ABC_PDR_domain2 The pleiotropic drug resistance-li | 100.0 | |
| TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC tra | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 100.0 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 100.0 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 100.0 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 100.0 | |
| COG4525 | 259 | TauB ABC-type taurine transport system, ATPase com | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| COG4604 | 252 | CeuD ABC-type enterochelin transport system, ATPas | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 100.0 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG4598 | 256 | HisP ABC-type histidine transport system, ATPase c | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03213 | 194 | ABCG_EPDR ABCG transporters are involved in eye pi | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 100.0 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02982 | 220 | heterocyst_DevA ABC exporter ATP-binding subunit, | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 100.0 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 100.0 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03231 | 201 | ABC_CcmA_heme_exporter CcmA, the ATP-binding compo | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| PRK13543 | 214 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| cd03220 | 224 | ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo | 100.0 | |
| cd03230 | 173 | ABC_DR_subfamily_A This family of ATP-binding prot | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13538 | 204 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK15056 | 272 | manganese/iron transporter ATP-binding protein; Pr | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| PRK14254 | 285 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 100.0 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| CHL00131 | 252 | ycf16 sulfate ABC transporter protein; Validated | 100.0 | |
| TIGR01166 | 190 | cbiO cobalt transport protein ATP-binding subunit. | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| COG4148 | 352 | ModC ABC-type molybdate transport system, ATPase c | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 100.0 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 100.0 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 100.0 | |
| cd03229 | 178 | ABC_Class3 This class is comprised of all BPD (Bin | 100.0 | |
| PRK14264 | 305 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13539 | 207 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK03695 | 248 | vitamin B12-transporter ATPase; Provisional | 100.0 | |
| PRK14246 | 257 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| TIGR02323 | 253 | CP_lyasePhnK phosphonate C-P lyase system protein | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14266 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| COG4161 | 242 | ArtP ABC-type arginine transport system, ATPase co | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| PRK09580 | 248 | sufC cysteine desulfurase ATPase component; Review | 100.0 | |
| TIGR01189 | 198 | ccmA heme ABC exporter, ATP-binding protein CcmA. | 100.0 | |
| KOG0056 | 790 | consensus Heavy metal exporter HMT1, ABC superfami | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| TIGR03771 | 223 | anch_rpt_ABC anchored repeat-type ABC transporter, | 100.0 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| cd03215 | 182 | ABC_Carb_Monos_II This family represents domain II | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK09544 | 251 | znuC high-affinity zinc transporter ATPase; Review | 100.0 | |
| PRK13545 | 549 | tagH teichoic acids export protein ATP-binding sub | 100.0 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 100.0 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 100.0 | |
| PRK14252 | 265 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 100.0 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 100.0 | |
| PRK13540 | 200 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| cd03213 | 194 | ABCG_EPDR ABCG transporters are involved in eye pi | 100.0 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 100.0 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 100.0 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 100.0 | |
| PRK13546 | 264 | teichoic acids export protein ATP-binding subunit; | 100.0 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK03695 | 248 | vitamin B12-transporter ATPase; Provisional | 100.0 | |
| TIGR02324 | 224 | CP_lyasePhnL phosphonate C-P lyase system protein | 100.0 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 100.0 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 |
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-191 Score=1723.03 Aligned_cols=1005 Identities=53% Similarity=0.878 Sum_probs=936.1
Q ss_pred cchHHhhhHHHHhcCCChhhhhhccccc-cCCCeeeeeccccChHhhHHHHHHHhhcccCChHHHHHHHHHHHHhcCCCC
Q 001400 19 VEDEEALRWAALERLPTYARARRGIFKN-VVGDVKEVDVSELAVQEQRLVLDRLVNAVEDDPERFFDRMRKRCEAVDLEL 97 (1085)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (1085)
+||||+|+|||+|||||++| +++.+ .++ ++|+.++++.+++.+.++..+..++|+|+++.++|+|++++ ++
T Consensus 12 ~~~e~~~~~a~~~~~pt~~~---~~~~~~~~~---~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~r~~~~~~--~~ 83 (1391)
T KOG0065|consen 12 DEDEEALRWAAIERLPTFDR---SLLRSIFES---EVDVTKLDPDDDPKFIEKSSKHWEQDNEKLLEKLRERIDRV--EL 83 (1391)
T ss_pred chhHHHHHHHHHhcCccccc---hhhhhhccC---cccccCCCcccchhHHHHhHHHHhhhHHHHHHHHHhhcCcc--cC
Confidence 44999999999999999999 55543 222 79999999999999999999999999999999999999998 89
Q ss_pred CCcEEEEeeeEEEEEEecCCCCCCChhhHHHHHHHHHHHHHhHhcCCCcceeecccceeeEeCCeEEEEeCCCCCChhHH
Q 001400 98 PKIEVRFQNLTVESFVHLGSRALPTIPNFIFNMTEALLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTL 177 (1085)
Q Consensus 98 ~~~~v~~~~l~v~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTL 177 (1085)
|.++++++++.++++++.| ||+.|...+..+..+...+.. ++...+||+|+||.++||+|++++||||||||||
T Consensus 84 p~~~~~~~~~gv~a~~~~~----~t~~n~~~~~~~~~~~~~~~~--~~~~~~il~~~sg~~~pg~m~lvLG~pgsG~ttl 157 (1391)
T KOG0065|consen 84 PTIEVRFSALGVEADVTYG----PTLVNILSNPLESILRMLGKR--KKKKIQILKDISGIIKPGEMTLVLGPPGSGKTTL 157 (1391)
T ss_pred CceEEEeeecccccccccc----hhhhhhhhhHHHHHhhhcccc--ccccceeecCcceeEcCCceEEEecCCCCchHHH
Confidence 9999999999999999876 999999999988877665543 4556789999999999999999999999999999
Q ss_pred HHHHHhhhCCCCceeeEEEECCccCCCCCCCceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhC
Q 001400 178 LLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAG 257 (1085)
Q Consensus 178 L~~L~G~l~~~~~~~G~i~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~ 257 (1085)
|++|+|.++......|+|+|||++.+++.+++.++|++|+|+|+|+|||||+|+|+++|++++.|++ +..|+|+..
T Consensus 158 lkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTVreTldFa~rck~~~~r~~---~~~R~e~~~- 233 (1391)
T KOG0065|consen 158 LKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTVRETLDFAARCKGPGSRYD---EVSRREKLA- 233 (1391)
T ss_pred HHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEEeehhhHHHhccCCccccc---cccHHHHHH-
Confidence 9999999988777789999999999999999999999999999999999999999999999999988 556666542
Q ss_pred CCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCcccccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCC
Q 001400 258 IKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGL 337 (1085)
Q Consensus 258 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqkqRvsia~al~~~p~vlllDEptsgL 337 (1085)
.++|++++++||++|+||+|||+++||+||||||||+||++++++++++||||+|+||
T Consensus 234 ----------------------~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De~t~GL 291 (1391)
T KOG0065|consen 234 ----------------------AMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDEITRGL 291 (1391)
T ss_pred ----------------------HHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeeecccccc
Confidence 2589999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEecCCeEEEecChhhHHHHHHhCCCCCCCCCChhHHHH
Q 001400 338 DSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQ 417 (1085)
Q Consensus 338 D~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~adfl~ 417 (1085)
|++|+.+|+++||+++|..+.|.+++++||+++++++||+|++|++|+++|+||++++++||+++||.||+++++|||++
T Consensus 292 DSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~yFe~~Gf~cP~r~~~ADfLt 371 (1391)
T KOG0065|consen 292 DSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLPYFEDMGFKCPPRKGTADFLT 371 (1391)
T ss_pred cHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHHHHHhcCccCCCccCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCcccccccccCCCCCCCCCChhHHHHHHHhCccccchhhhhcCcccccCCCcccccCCCCCCcHHHHHHHHHHHHHH
Q 001400 418 EVTSKKDQEQYWSNPYLPYRYISPGKFAEAFHSYHTGKNLSEELAVPFDRRFNHPAALSTSKYGEKRSELLKTSFNWQLL 497 (1085)
Q Consensus 418 ~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 497 (1085)
++++++++.++|.....|+.+.++++|.+.|.+++.++++..+++.++++++.++.++..++|.++.|+|++.|+.|+++
T Consensus 372 ~vts~k~~~~~~~~~~~~~~~~~~~ef~~~~~~s~~~~~l~~~l~~~~~~~k~~~~al~s~~y~v~~~~qvk~c~~R~f~ 451 (1391)
T KOG0065|consen 372 EVTSKKDQEQYWNKRSKPYPYTSVSEFAEYFLNSEDYAKLKKELSKPYDKSKKHKAALVSSKYSVPYWEQVKACTIREFL 451 (1391)
T ss_pred HhhcCccccccccccCCCcccCCHHHHHHHHhcchhhHHHHHHhcchhhhhhccchhhcCCceeccHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhChHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCcc
Q 001400 498 LMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHKTIDDGGLYLGALYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHF 577 (1085)
Q Consensus 498 ~~~r~~~~~~~~~~~~~~~ali~g~vf~~~~~~~~~~~~~~~~~g~lf~~l~~~~~~~~~~~~~~~~~~~v~~k~r~~~~ 577 (1085)
+++||.+++++++++.+++|+++|++|+++.+ .+..++..+.|++||++++.+|++++++.++++++|||+|||+..|
T Consensus 452 l~k~n~~~~~~~~~~~~i~ali~gslF~~~~~--~t~~~~~~~~~~lffsll~~~f~~laEi~~~~~~~pv~~Khr~~~f 529 (1391)
T KOG0065|consen 452 LMKRNYFYYVFKTVQLVIQALITGSLFYRTPM--STTSGGYSRGGALFFALLFNLFNGLAEIALTFQRLPVFYKHRDLSF 529 (1391)
T ss_pred HHhCCceEEEhHHHHHHHHHHHHhhheeeccC--cccccchhhhhHHHHHHHHHHHHhHHHHHHHHhhcchHHHhhcccc
Confidence 99999999999999999999999999999985 5556677889999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHhHcccCHHHHHHHHHHH
Q 001400 578 YPSWVYTIPSWALSIPTSLIESGFWVAVTYYVIGYDPNVVRFSRQLLLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSFA 657 (1085)
Q Consensus 578 y~~~ay~l~~~~~~iP~~~i~~~i~~~i~Y~~~g~~~~~~~f~~~~l~~~~~~~~~~~l~~~i~~~~~~~~va~~~~~~~ 657 (1085)
||+|+++++.+++++|+.++++.+|.+++||++|+.+++++||++++++++.+++++++||+++++++++.+|+++|++.
T Consensus 530 Y~p~A~al~s~l~~~P~~~i~~~vf~iI~Yfl~gl~~~A~rFF~~fL~lf~~~~~~s~lFr~ia~l~~t~~~An~~g~~~ 609 (1391)
T KOG0065|consen 530 YPPWAEALASTLLKIPSSFIESVVFVIITYFLIGLKRNAGRFFIQFLFLFLCQFCMSGLFRFIASLSRTLSIANLIGGIL 609 (1391)
T ss_pred cChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHhhHhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccccCCCchhHHHHhHhhcHHHHHHHHHHHhhhcCCcccccC------------CC---CCcchHHHHHhh
Q 001400 658 MLVVMALGGFIISRDSIPKWWIWGFWVSPLMYAQNAASVNEFLGHSWDKKA------------GN---SNFSLGEAILRQ 722 (1085)
Q Consensus 658 ~l~~~l~~Gf~i~~~~ip~~~~w~~~isp~~y~~~a~~~nef~~~~~~~~~------------~~---~~~~~g~~~l~~ 722 (1085)
++++.+++||+|++.+||+||+|++|++|++|+++++++|||++.+|.|.+ .. ...+.|..+++.
T Consensus 610 ~L~i~m~~Gf~Ip~~~m~~W~~Wi~yinPl~Y~fesl~~NEF~~~~~~c~p~gp~y~n~~~~~~~c~~~~~~~G~~~v~g 689 (1391)
T KOG0065|consen 610 LLVLFMYGGFVIPKKDMPPWFRWIAYINPLMYAFESLMSNEFHGRRWPCSPSGPAYDNISIENKVCAATGATLGNDYVSG 689 (1391)
T ss_pred HHHHHHHcceeeeccccchHHHHHHHHCHHHHHHHHHHHhhhhcccCCCCCCCCcccccccccccchhhccccCceEEec
Confidence 999999999999999999999999999999999999999999999999972 12 135778889988
Q ss_pred cCCC-----CCCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccchhhhhhHhhhh-cCcchhHHHHhhhhccc
Q 001400 723 RSLF-----PESYWYWIGVGAMLGYTLLFNALFTFFLSYLNPLGKQQAVVSKKELQERDRRR-KGENVVIELREYLQRSS 796 (1085)
Q Consensus 723 ~~~~-----~~~~~~w~~~g~ll~~~~~f~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 796 (1085)
+++. +..+|+|+++|+++||.++|+++..+++.|+++..+.+..+..++..++.... ...... .+.
T Consensus 690 ~~~l~~~~~y~~~~~Wr~~gillgf~v~f~~~~~ia~~yl~p~~~~~~~l~~~~~~~~~~~~~~~~~~~--------~~~ 761 (1391)
T KOG0065|consen 690 RDYLKVQYQYEYKWYWRNFGILLGFTVFFNFVFLIALEYLKPLKKSGAILVFKKGKEKKKVKSAGSSSE--------IEK 761 (1391)
T ss_pred ccccccccccccceeEeehhHHHHHHHHHHHHHHHHHHhcCccccccceeeeccchhhhcchhcccccc--------ccc
Confidence 8887 78899999999999999999999999999999998888877665433221111 000000 000
Q ss_pred ccCCcccccCCcccccccceeeeccceeeeeccccccccccccCCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhh
Q 001400 797 SLNGKYFKQKGMVLPFQPLSMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLA 876 (1085)
Q Consensus 797 ~~~~~~~~~~~~~~~~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~ 876 (1085)
.......+.+++++|+.|.+++++|+.|.+|+|.+++.+| +++++|+|||+.++||.++||||+|||||||||++|+
T Consensus 762 ~~~s~~~~~~~~~~~~~~~~~~~~~V~~w~dl~~~~~~qG---~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA 838 (1391)
T KOG0065|consen 762 LDDSSHQEKNKMVLPFTPLSLTFKDVFYWVDLPYEMPIQG---GTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLA 838 (1391)
T ss_pred cccccccccccccCCCccccccccceEEEEeCCccccccc---cceEhhhcCceEecCCceeehhcCCCCchHHHHHHHh
Confidence 0011111456789999999999999999999999998877 7889999999999999999999999999999999999
Q ss_pred CCCCCCeeeeEEEEcCccCChhcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcc
Q 001400 877 GRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSL 956 (1085)
Q Consensus 877 g~~~~~~~~G~i~i~g~~~~~~~~~~~~gy~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~ 956 (1085)
||+++|.++|+|.|||+|+.+..|+|.+|||+|+|+|.+.+||+|+|.|+|++|+|++++.+++.+++|++++.++|.++
T Consensus 839 ~R~t~G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~~~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~ 918 (1391)
T KOG0065|consen 839 GRKTGGYIEGDILISGFPKDQETFARVSGYVEQQDIHSPELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEY 918 (1391)
T ss_pred cCcccceEEeEEEECCeeCchhhhccccceeecccccCcccchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCCCCCCHHHHHHHHHHHHHhcCC-CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHh
Q 001400 957 SGALIGLPGINGLSTEQRKRLTIAVELVANP-SIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFES 1035 (1085)
Q Consensus 957 ~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p-~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~ 1035 (1085)
+|.++|.|| ++||++|||||+||++|++|| .||||||||||||++++..|++++|+++++|+|||||+||||.++++.
T Consensus 919 ~daiVG~~G-~GLs~eQRKrLTIgVELvA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~ 997 (1391)
T KOG0065|consen 919 ADALVGLPG-SGLSTEQRKRLTIGVELVANPSSILFLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEA 997 (1391)
T ss_pred hhhhccCCC-CCCCHHHhceeeEEEEEecCCceeEEecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHH
Confidence 999999999 899999999999999999999 899999999999999999999999999999999999999999999999
Q ss_pred cCEEEEEecCcEEEEecCCCCchHHHHHHHHhccccccCCcc
Q 001400 1036 FDELLFMKRGGELIYAGPLGSKSCELIKYFEVESFMFKSPRI 1077 (1085)
Q Consensus 1036 ~d~il~l~~gG~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~ 1077 (1085)
||++++|++||++||+||+|++++++++|||+++|++++++.
T Consensus 998 FD~LLLLkrGGqtVY~G~lG~~s~~li~YFes~~~~~~~~~~ 1039 (1391)
T KOG0065|consen 998 FDELLLLKRGGQTVYFGPLGENSSKLIEYFESIGGVKCISDE 1039 (1391)
T ss_pred HhHHHHHhcCCeEEEecCcccccHHHHHHHHhcCCccCCCCC
Confidence 999999999999999999999999999999999999977654
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-176 Score=1702.78 Aligned_cols=1072 Identities=60% Similarity=1.009 Sum_probs=949.2
Q ss_pred ccccccCCCC-C---CCcchHHhhhHHHHhcCCChhhhhhcccccc-----CCC---eeeeeccccChHhhHHHHHHHhh
Q 001400 6 ENVFSRTSSF-R---DEVEDEEALRWAALERLPTYARARRGIFKNV-----VGD---VKEVDVSELAVQEQRLVLDRLVN 73 (1085)
Q Consensus 6 ~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~---~~~~~~~~~~~~~~~~~~~~~~~ 73 (1085)
+++|++.+.. + ..|||||+|+|||+||||||+|+|++++... .|+ ..++|+++|+.++++.+++++++
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (1470)
T PLN03140 24 EDVFSGGSQSRRRTSSVDEDEEALKWAAIEKLPTYSRLRTSIMKSFVENDVYGNQLLHKEVDVTKLDGNDRQKFIDMVFK 103 (1470)
T ss_pred hhhhhccchhccccccccCChHhhhhHHhhhCCchhhhhhhhhhcccccccccccccccccccccCChHHHHHHHHhhhc
Confidence 6788664322 2 3678999999999999999999999999653 122 23699999999999999999999
Q ss_pred cccCChHHHHHHHHHHHHhcCCCCCCcEEEEeeeEEEEEEecCCCCCCChhhHHHHHHHHHHHHHhHhcCCCcceeeccc
Q 001400 74 AVEDDPERFFDRMRKRCEAVDLELPKIEVRFQNLTVESFVHLGSRALPTIPNFIFNMTEALLRQLRIYRGNRSKLTILDD 153 (1085)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~v~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~ 153 (1085)
++++|+++|++++++|.+++|+++|++||||+||+|++++.++++.+||++|.+.+.++.+...++....++.+++||+|
T Consensus 104 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~v~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~k~~~~~IL~~ 183 (1470)
T PLN03140 104 VAEEDNEKFLKKFRNRIDRVGIKLPTVEVRFEHLTVEADCYIGSRALPTLPNAARNIAESALGMLGINLAKKTKLTILKD 183 (1470)
T ss_pred ccchhHHHHHHHHHhhhccccCCCCCCeeEEeCCEEEEEecCCcccCCcHHHHHHHHHHHHHHHhccccCCCccceeccC
Confidence 99999999999999999999999999999999999999999999999999999999888766544332334456789999
Q ss_pred ceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCCCceEEEEccCCCCCCCCCHHHHHHHh
Q 001400 154 LSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFA 233 (1085)
Q Consensus 154 vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~ 233 (1085)
+|+.|+|||+++|+||||||||||||+|+|+++++..++|+|+|||+++++..+++.++||+|+|.|++++||+|||.|+
T Consensus 184 vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~EtL~f~ 263 (1470)
T PLN03140 184 ASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVKETLDFS 263 (1470)
T ss_pred CeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcHHHHHHHH
Confidence 99999999999999999999999999999999887678999999999987776778899999999999999999999999
Q ss_pred hhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCcccccCchhhhh
Q 001400 234 GQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKK 313 (1085)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqkq 313 (1085)
++|++.+.++++..+..++++..++.|+.++|.+|++....+.+.+..++++|+.+||++|+||.||++++++|||||||
T Consensus 264 a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rglSGGerk 343 (1470)
T PLN03140 264 ARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGISGGQKK 343 (1470)
T ss_pred HHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccCCCcccce
Confidence 99988777666666666777777788888999999998888877788899999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEecCCeEEEecChh
Q 001400 314 RLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQGPRV 393 (1085)
Q Consensus 314 Rvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~~G~iv~~G~~~ 393 (1085)
||+||++|+++|+++||||||+|||+.++.++++.|+++++..+.|+|+++|||.++++++||+|++|++|+++|+||++
T Consensus 344 RVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G~ivy~G~~~ 423 (1470)
T PLN03140 344 RVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQIVYQGPRD 423 (1470)
T ss_pred eeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCceEEEeCCHH
Confidence 99999999999999999999999999999999999999988667899999999999999999999999999999999999
Q ss_pred hHHHHHHhCCCCCCCCCChhHHHHhhcCcccccccccCCCCCCCCCChhHHHHHHHhCccccchhhhhcCcccccCCCcc
Q 001400 394 SVLDFFASMGFSCPKRKNVADFLQEVTSKKDQEQYWSNPYLPYRYISPGKFAEAFHSYHTGKNLSEELAVPFDRRFNHPA 473 (1085)
Q Consensus 394 ~~~~~f~~~G~~~p~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (1085)
++.+||+++||+||+++|+|||+++++++++++++|.....|+++.++++|+++|++++.++.+.+++..+.++...++.
T Consensus 424 ~~~~yF~~lGf~cP~~~n~ADFl~~v~s~~~~~~~~~~~~~p~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 503 (1470)
T PLN03140 424 HILEFFESCGFKCPERKGTADFLQEVTSKKDQEQYWADRNKPYRYISVSEFAERFKSFHVGMQLENELSVPFDKSQSHKA 503 (1470)
T ss_pred HHHHHHHHcCCCCCCCCChHHHHHHhcCchhhhhhhhccCCccccCCHHHHHHHHHhcHHHHHHHHHHhhhhhhhhcccc
Confidence 99999999999999999999999999999888788877677888889999999999999888888887777666555666
Q ss_pred cccCCCCCCcHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccccchhHHHHHHHHHHHHHH
Q 001400 474 ALSTSKYGEKRSELLKTSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHKTIDDGGLYLGALYFSMVIILF 553 (1085)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~ali~g~vf~~~~~~~~~~~~~~~~~g~lf~~l~~~~~ 553 (1085)
....++|..++++|++.|++|++++++||+..+++++++.+++|+++|++||+++++..+..++..+.|++||++++.++
T Consensus 504 ~~~~~~y~~s~~~q~~~~~~R~~~~~~Rd~~~~~~r~~~~ii~ali~GsvF~~~~~~~~~~~~~~~~~g~lff~~l~~~~ 583 (1470)
T PLN03140 504 ALVFSKYSVPKMELLKACWDKEWLLMKRNAFVYVFKTVQIIIVAAIASTVFLRTEMHTRNEEDGALYIGALLFSMIINMF 583 (1470)
T ss_pred cccCCCCcCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHHHH
Confidence 66667899999999999999999999999999999999999999999999999987765556778889999999999999
Q ss_pred HHHHHHHHHHhhhhhhhhhhcCcccchHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccHHHHHHHHHHHHHHHHHH
Q 001400 554 NGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIPTSLIESGFWVAVTYYVIGYDPNVVRFSRQLLLYFFLHQMS 633 (1085)
Q Consensus 554 ~~~~~~~~~~~~~~v~~k~r~~~~y~~~ay~l~~~~~~iP~~~i~~~i~~~i~Y~~~g~~~~~~~f~~~~l~~~~~~~~~ 633 (1085)
++++++..++.+||||+|||+..||++|+|+++++++++|+.++++++|++++|||+|+.+++.+||.+++++++.++++
T Consensus 584 ~~~~~l~~~~~~r~vf~ker~~~~Y~~~ay~la~~l~~iP~~~i~~~if~~I~Y~m~Gl~~~~~~Ff~f~l~~~l~~~~~ 663 (1470)
T PLN03140 584 NGFAELALMIQRLPVFYKQRDLLFHPPWTFTLPTFLLGIPISIIESVVWVVITYYSIGFAPEASRFFKQLLLVFLIQQMA 663 (1470)
T ss_pred HHHHHHHHHHhccchhHHhhhccCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCchhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhHcccCHHHHHHHHHHHHHHHHHHhhccccCCCchhHHHHhHhhcHHHHHHHHHHHhhhcCCcccccC-CCCC
Q 001400 634 IGLFRVIGSLGRNMIVANTFGSFAMLVVMALGGFIISRDSIPKWWIWGFWVSPLMYAQNAASVNEFLGHSWDKKA-GNSN 712 (1085)
Q Consensus 634 ~~l~~~i~~~~~~~~va~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~w~~~isp~~y~~~a~~~nef~~~~~~~~~-~~~~ 712 (1085)
.++|++++++++++.+|+++++++++++++|+||++++++||+||+|++|+||++|+++++++|||.+..|.+.. .+..
T Consensus 664 ~~l~~~i~a~~~~~~~A~~~~~~~~l~~~lf~Gf~i~~~~ip~w~~W~~yisp~~Ya~eal~~NEf~~~~~~~~~~~~~~ 743 (1470)
T PLN03140 664 AGIFRLIASVCRTMIIANTGGALVLLLVFLLGGFILPKGEIPNWWEWAYWVSPLSYGFNALAVNEMFAPRWMNKMASDNS 743 (1470)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHccceechHhCchHHHHHHHhCHHHHHHHHHHHHhccCccccCcccCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999998886432 2335
Q ss_pred cchHHHHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccchhhhhhHhhhhcC-------cch-
Q 001400 713 FSLGEAILRQRSLFPESYWYWIGVGAMLGYTLLFNALFTFFLSYLNPLGKQQAVVSKKELQERDRRRKG-------ENV- 784 (1085)
Q Consensus 713 ~~~g~~~l~~~~~~~~~~~~w~~~g~ll~~~~~f~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~- 784 (1085)
...|+.+|+.+++...+.|+|++++++++|+++|+++++++++|.++..........+........... ++.
T Consensus 744 ~~~G~~~L~~~g~~~~~~~~w~~~~iL~~~~v~f~~l~~l~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 823 (1470)
T PLN03140 744 TRLGTAVLNIFDVFTDKNWYWIGVGALLGFTILFNVLFTLALTYLNPLGKKQAIISEETAEEMEGEEDSIPRSLSSADGN 823 (1470)
T ss_pred cccHHHHHHhcCcCccccchhhhHHHHHHHHHHHHHHHHHHHHhcCccCCCCccccccchhhhhcccccccccccccccc
Confidence 678999999999999999999999999999999999999999999876655444332211100000000 000
Q ss_pred h---HHH---H-hhh---hcccc--cCCcccccCCcccccccceeeeccceeeeeccccccccccccCCeEEeeeeeEEE
Q 001400 785 V---IEL---R-EYL---QRSSS--LNGKYFKQKGMVLPFQPLSMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAF 852 (1085)
Q Consensus 785 ~---~~~---~-~~~---~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~L~~vs~~i 852 (1085)
. ... . ... ..... ......+.+++.+|+.|.+++|+|++|.++++.+.++.+..++++++|+|||+++
T Consensus 824 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i 903 (1470)
T PLN03140 824 NTREVAIQRMSNPEGLSKNRDSSLEAANGVAPKRGMVLPFTPLAMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAF 903 (1470)
T ss_pred ccccccccccccccccccccccccccccccccccccccCCCcceEEEEEEEEEEccCccccccccCcCCceEeeCcEEEE
Confidence 0 000 0 000 00000 0001123456778999999999999999999888777776667788999999999
Q ss_pred eCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCChhcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCC
Q 001400 853 RPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLP 932 (1085)
Q Consensus 853 ~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gy~~Q~~~~~~~~tv~e~l~~~~~~~~~ 932 (1085)
+||+++||+|||||||||||++|+|+.++|..+|+|.++|++.....+++.+|||+|+|.+++.+||+|+|.|++.++.+
T Consensus 904 ~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~ 983 (1470)
T PLN03140 904 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLP 983 (1470)
T ss_pred ECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccCChHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCC
Confidence 99999999999999999999999999876678999999999876556678899999999999999999999999888776
Q ss_pred CcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 001400 933 SEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVR 1012 (1085)
Q Consensus 933 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~ 1012 (1085)
.....+++.+.++++++.++|.++.+..++.+++++|||||||||+||++|+.+|+||||||||||||+.++..+++.|+
T Consensus 984 ~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~ 1063 (1470)
T PLN03140 984 KEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1063 (1470)
T ss_pred CCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH
Confidence 55555566678999999999999999998887778999999999999999999999999999999999999999999999
Q ss_pred HHHHCCceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCCCchHHHHHHHHhccccccCCcc
Q 001400 1013 NIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGSKSCELIKYFEVESFMFKSPRI 1077 (1085)
Q Consensus 1013 ~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~ 1077 (1085)
+++++|+|||||+|||+.++++.||++++|++||+++|.|+.+++++++++|||+++|+|+||+.
T Consensus 1064 ~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v~~G~~~~~~~~~~~yF~~~~g~~~~p~~ 1128 (1470)
T PLN03140 1064 NTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYSGPLGRNSHKIIEYFEAIPGVPKIKEK 1128 (1470)
T ss_pred HHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEEEECCcccccccHHHHHHhcCCCCCCCCC
Confidence 99988999999999999778899999999998899999999999999999999999999888764
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-136 Score=1340.78 Aligned_cols=955 Identities=32% Similarity=0.518 Sum_probs=771.2
Q ss_pred CChHHHHHHHHHHHHhcCCCCC--CcEEEEeeeEEEEEEecCCCCCCChhhHHHHHHHHHHHHHhHhcCCCcceeecccc
Q 001400 77 DDPERFFDRMRKRCEAVDLELP--KIEVRFQNLTVESFVHLGSRALPTIPNFIFNMTEALLRQLRIYRGNRSKLTILDDL 154 (1085)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~l~v~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~v 154 (1085)
.|++++++.++++.++.+...| +++|+|+||+|++ ...+...+||+.|.+.+........+. ..+++.+++||+|+
T Consensus 3 f~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~v~~-~~~~~~~~~t~~~~~~~~~~~~~~~~~-~~~~~~~~~iL~~v 80 (1394)
T TIGR00956 3 FNAKAWVKNFRKLIDSDPIYYKPYKLGVAYKNLSAYG-VAADSDYQPTFPNALLKILTRGFRKLK-KFRDTKTFDILKPM 80 (1394)
T ss_pred CCHHHHHHHHHHHHhccccCCCCCeeeEEEECCEEEE-EeccccccCchHHHHHHHHHHHHHHhc-ccCCCCcceeeeCC
Confidence 5677788776666666666555 9999999999999 445666789999998887654433321 12334567899999
Q ss_pred eeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCC-CceeeEEEECCccCCCCC--CCceEEEEccCCCCCCCCCHHHHHH
Q 001400 155 SGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHH-LQVSGKITYNGHGFKEFV--PPRTSAYVSQQDWQVAEMTVRETLD 231 (1085)
Q Consensus 155 s~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~-~~~~G~i~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~lTV~E~l~ 231 (1085)
|+.++|||+++|+||||||||||||+|+|++.+. .+.+|+|.|||+++.+.. .++.++||+|+|.|++.+||+|||.
T Consensus 81 s~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~lTV~E~l~ 160 (1394)
T TIGR00956 81 DGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHLTVGETLD 160 (1394)
T ss_pred EEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCCCCHHHHHH
Confidence 9999999999999999999999999999987432 236999999999875432 3456999999999999999999999
Q ss_pred HhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCcccccCchhh
Q 001400 232 FAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQ 311 (1085)
Q Consensus 232 f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGq 311 (1085)
|+++++.+..+.... .+.++ .+..++.+++.+||++++||.||++.+++|||||
T Consensus 161 f~~~~~~~~~~~~~~---~~~~~-----------------------~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGe 214 (1394)
T TIGR00956 161 FAARCKTPQNRPDGV---SREEY-----------------------AKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGE 214 (1394)
T ss_pred HHHHhCCCCCCCCCC---CHHHH-----------------------HHHHHHHHHHHcCcccccCceeCCCcCCCCCccc
Confidence 998876432111000 00000 0123577899999999999999999999999999
Q ss_pred hhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEecCCeEEEecC
Q 001400 312 KKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQGP 391 (1085)
Q Consensus 312 kqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~~G~iv~~G~ 391 (1085)
||||+||++|+.+|+++||||||+|||+.++.++++.|+++++..+.|+|+++|||.++++++||+|++|++|+++|+|+
T Consensus 215 rkRvsIA~aL~~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~ 294 (1394)
T TIGR00956 215 RKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGP 294 (1394)
T ss_pred chHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECC
Confidence 99999999999999999999999999999999999999999876678899999999999999999999999999999999
Q ss_pred hhhHHHHHHhCCCCCCCCCChhHHHHhhcCcccccccccCCCCCCCCCChhHHHHHHHhCccccchhhhhcCccccc---
Q 001400 392 RVSVLDFFASMGFSCPKRKNVADFLQEVTSKKDQEQYWSNPYLPYRYISPGKFAEAFHSYHTGKNLSEELAVPFDRR--- 468 (1085)
Q Consensus 392 ~~~~~~~f~~~G~~~p~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 468 (1085)
++++.+||+++||.||++.|+|||+++++++.++ +++... +.....++++++++|+++..++++.++++.+.++.
T Consensus 295 ~~~~~~yF~~lG~~~p~~~n~aDfl~~~~~~~~~-~~~~~~-e~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 372 (1394)
T TIGR00956 295 ADKAKQYFEKMGFKCPDRQTTADFLTSLTSPAER-QIKPGY-EKKVPRTPQEFETYWRNSPEYAQLMKEIDEYLDRCSES 372 (1394)
T ss_pred HHHHHHHHHHcCCCCCCCCChHHHHHhccChhhh-hccccc-cccCCCCHHHHHHHHHcCHHHHHHHHHHHHHhhhccch
Confidence 9999999999999999999999999999986543 222211 11123468899999999887766655543321110
Q ss_pred ------------CCCcccccCCCCCCcHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccc
Q 001400 469 ------------FNHPAALSTSKYGEKRSELLKTSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHKTIDD 536 (1085)
Q Consensus 469 ------------~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~ali~g~vf~~~~~~~~~~~~ 536 (1085)
...+.....++|..+++.|+..|++|+++.++||+..+..++++.+++|+++|++||+++.+. .+
T Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~Rd~~~~~~r~~~~ii~~li~G~~F~~~~~~~---~~ 449 (1394)
T TIGR00956 373 DTKEAYRESHVAKQSKRTRPSSPYTVSFSMQVKYCLARNFLRMKGNPSFTLFMVFGNIIMALILSSVFYNLPKNT---SD 449 (1394)
T ss_pred hhHHHHHHHHHhhhcccccCCCCCcCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCCc---hh
Confidence 000112234568889999999999999999999999999999999999999999999987543 23
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCcccchHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccH
Q 001400 537 GGLYLGALYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIPTSLIESGFWVAVTYYVIGYDPNV 616 (1085)
Q Consensus 537 ~~~~~g~lf~~l~~~~~~~~~~~~~~~~~~~v~~k~r~~~~y~~~ay~l~~~~~~iP~~~i~~~i~~~i~Y~~~g~~~~~ 616 (1085)
.....|++||++++.++.++.++..++.+||+|+|||..++|++++|++++++.++|+.++.+++|++++|||+|+.+++
T Consensus 450 ~~~r~g~lf~~~~~~~~~~~~~i~~~~~eR~i~~re~~~~~Y~~~ay~la~~l~~iP~~~~~~~if~~i~Yfm~gl~~~~ 529 (1394)
T TIGR00956 450 FYSRGGALFFAILFNAFSSLLEIASMYEARPIVEKHRKYALYHPSADAIASIISEIPFKIIESVVFNIILYFMVNFRRTA 529 (1394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcceeeeccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhhEEcCCCcccH
Confidence 45668999999999999999999988999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHcccCHHHHHHHHHHHHHHHHHHhhccccCCCchhHHHHhHhhcHHHHHHHHHHH
Q 001400 617 VRFSRQLLLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSFAMLVVMALGGFIISRDSIPKWWIWGFWVSPLMYAQNAASV 696 (1085)
Q Consensus 617 ~~f~~~~l~~~~~~~~~~~l~~~i~~~~~~~~va~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~w~~~isp~~y~~~a~~~ 696 (1085)
.+||.+++++++...++.++++++++++++..+|+.+++++++++++|+||++++++||+||+|++|+||+.|+++++++
T Consensus 530 ~~Ff~f~l~~~l~~~~~~~~~~~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~~~mp~~~~W~~yisp~~yafeal~~ 609 (1394)
T TIGR00956 530 GRFFFYLLILFICTLAMSHLFRSIGAVTKTLSEAMTPAAILLLALSIYTGFAIPRPSMLGWSKWIYYVNPLAYAFESLMV 609 (1394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcccccChhhccHHHHHHHHcCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCcccccC--C----------------------CCCcchHHHHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHH
Q 001400 697 NEFLGHSWDKKA--G----------------------NSNFSLGEAILRQRSLFPESYWYWIGVGAMLGYTLLFNALFTF 752 (1085)
Q Consensus 697 nef~~~~~~~~~--~----------------------~~~~~~g~~~l~~~~~~~~~~~~w~~~g~ll~~~~~f~~l~~~ 752 (1085)
|||.+..+.|.. + +.....|+++|+. .+.....|+|.+++++++|+++|.++..+
T Consensus 610 nef~~~~~~C~~~~p~g~~y~~~~~~~~~C~~~g~~~g~~~~~G~~~L~~-~~~~~~~~~w~n~gil~~~~v~f~~~~~l 688 (1394)
T TIGR00956 610 NEFHGRRFECSQYVPSGGGYDNLGVTNKVCTVVGAEPGQDYVDGDDYLKL-SFQYYNSHKWRNFGIIIGFTVFFFFVYIL 688 (1394)
T ss_pred hhhcCCcccccccccCCCCCCCCCccCccccCCCCcCCcccccHHHHHHh-cCCcccchhhHHHHHHHHHHHHHHHHHHH
Confidence 999998887631 0 0124578899985 34445568999999999999999999999
Q ss_pred HHHhcCCCCCcccccchhhhh--h-HhhhhcCcchhHHHHhhhhcccccCCccccc--CCccccc--ccceeeeccceee
Q 001400 753 FLSYLNPLGKQQAVVSKKELQ--E-RDRRRKGENVVIELREYLQRSSSLNGKYFKQ--KGMVLPF--QPLSMAFGNINYF 825 (1085)
Q Consensus 753 ~l~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~--~~~~~~~~~~~y~ 825 (1085)
+++|.++.............. . .......+......++.............+. .....|. ....+.++|++|.
T Consensus 689 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~nl~~~ 768 (1394)
T TIGR00956 689 LTEFNKGAKQKGEILVFRRGSLKRAKKAGETSASNKNDIEAGEVLGSTDLTDESDDVNDEKDMEKESGEDIFHWRNLTYE 768 (1394)
T ss_pred HHHhccccCCCCceEeeccccccchhhcccccccccccccccccCCCCccccccccccccccccccCCCceEEEEeeEEE
Confidence 999988554332221111100 0 0000000000000000000000000000000 0000000 1124677887776
Q ss_pred eeccccccccccccCCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCC-eeeeEEEEcCccCChhcccceE
Q 001400 826 VDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGG-IIEGDIYISGYPKRQETFARIS 904 (1085)
Q Consensus 826 v~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~-~~~G~i~i~g~~~~~~~~~~~~ 904 (1085)
++.. .+++.+|+|||++++|||++||+|||||||||||++|+|+.+++ +.+|+|.+||++... .+++.+
T Consensus 769 ~~~~---------~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~-~~~~~i 838 (1394)
T TIGR00956 769 VKIK---------KEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDS-SFQRSI 838 (1394)
T ss_pred ecCC---------CCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCh-hhhcce
Confidence 5321 13467999999999999999999999999999999999987543 457999999998753 467889
Q ss_pred EEEccCCCCCCCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHh
Q 001400 905 GYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELV 984 (1085)
Q Consensus 905 gy~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~ 984 (1085)
|||+|++.+++.+||+|++.|++.++.+......++.+.++++++.+++.++.|..++.++. +|||||||||+||+||+
T Consensus 839 ~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~-~LSgGqrqRl~Ia~aL~ 917 (1394)
T TIGR00956 839 GYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGE-GLNVEQRKRLTIGVELV 917 (1394)
T ss_pred eeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCC-CCCHHHhhHHHHHHHHH
Confidence 99999999999999999999998888765555556667899999999999999988876543 79999999999999999
Q ss_pred cCCC-EEEEeCCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCCCchHHHHH
Q 001400 985 ANPS-IVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGSKSCELIK 1063 (1085)
Q Consensus 985 ~~p~-illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~~~~~~~~~ 1063 (1085)
.+|+ ||||||||||||+.++..+++.|++++++|+|||||+|||+..+++.||++++|++||+++|.|+.+++++++++
T Consensus 918 ~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~~~~~~~~~~ 997 (1394)
T TIGR00956 918 AKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLGENSHTIIN 997 (1394)
T ss_pred cCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCcccccchHHH
Confidence 9997 999999999999999999999999998889999999999996667889999999988899999999999999999
Q ss_pred HHHhccccccCCcc
Q 001400 1064 YFEVESFMFKSPRI 1077 (1085)
Q Consensus 1064 ~~~~~~g~~~~~~~ 1077 (1085)
||+++ |.++||+-
T Consensus 998 yf~~~-G~~~~p~~ 1010 (1394)
T TIGR00956 998 YFEKH-GAPKCPED 1010 (1394)
T ss_pred HHHhc-CCCCCCCC
Confidence 99975 88667764
|
|
| >KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-82 Score=768.57 Aligned_cols=585 Identities=30% Similarity=0.484 Sum_probs=491.9
Q ss_pred CCCcEEEEeeeEEEEEEecCCCCCCChhhHHHHHHHHHHHHHhHhcCCCcceeecccceeeEeCCeEEEEeCCCCCChhH
Q 001400 97 LPKIEVRFQNLTVESFVHLGSRALPTIPNFIFNMTEALLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTT 176 (1085)
Q Consensus 97 ~~~~~v~~~~l~v~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKST 176 (1085)
...++++|+|+++++... .+..+++|+||||.++|||++|||||+||||||
T Consensus 21 ~~~~~~~~~~~~~~~~~~-----------------------------~~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtT 71 (613)
T KOG0061|consen 21 LEPVKLSFRNLTLSSKEK-----------------------------SKKTKTILKGVSGTAKPGELLAIMGPSGSGKTT 71 (613)
T ss_pred cccceeEEEEEEEEecCC-----------------------------CCccceeeeCcEEEEecCeEEEEECCCCCCHHH
Confidence 346889999999987631 113468999999999999999999999999999
Q ss_pred HHHHHHhhhCCCCceeeEEEECCccCCCCCCCceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHh
Q 001400 177 LLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIA 256 (1085)
Q Consensus 177 LL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~ 256 (1085)
||++|+|+.+....++|+|++||++.+....++.+|||.|+|.++|++||+|+|.|+|+++.+... ..
T Consensus 72 LL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~-------~~----- 139 (613)
T KOG0061|consen 72 LLNALAGRLNGGLKLSGEILLNGRPRDSRSFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSL-------SK----- 139 (613)
T ss_pred HHHHHhccccCCCcceEEEEECCccCchhhhhheeEEEcccccccccccHHHHHHHHHHhcCCCCC-------CH-----
Confidence 999999999876678999999998887777788999999999999999999999999998765421 11
Q ss_pred CCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCcccccCchhhhhHHHHHHHHhCCCcEeEEeCCCCC
Q 001400 257 GIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNG 336 (1085)
Q Consensus 257 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqkqRvsia~al~~~p~vlllDEptsg 336 (1085)
++.+.+|+++++.|||.+|+||+||+...||+||||||||+||..|+.+|+||||||||||
T Consensus 140 -------------------~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell~~P~iLflDEPTSG 200 (613)
T KOG0061|consen 140 -------------------EEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLTDPSILFLDEPTSG 200 (613)
T ss_pred -------------------HHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHHHcCCCEEEecCCCCC
Confidence 1224579999999999999999999988899999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEecCCeEEEecChhhHHHHHHhCCCCCCCCCChhHHH
Q 001400 337 LDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFL 416 (1085)
Q Consensus 337 LD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~adfl 416 (1085)
||+.++.++++.|+++|+. |+|+|+++|||+.+++++||++++|++|+++|+|+++++.+||+++|++||++.||+||+
T Consensus 201 LDS~sA~~vv~~Lk~lA~~-grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G~~~~~~~ff~~~G~~~P~~~Npadf~ 279 (613)
T KOG0061|consen 201 LDSFSALQVVQLLKRLARS-GRTVICTIHQPSSELFELFDKLLLLSEGEVVYSGSPRELLEFFSSLGFPCPELENPADFL 279 (613)
T ss_pred cchhhHHHHHHHHHHHHhC-CCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEecCHHHHHHHHHhCCCCCCCcCChHHHH
Confidence 9999999999999999997 999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCcccccccccCCCCCCCCCChhHHHHHHHhCccccchhhhhcCcccccCCCcccccCCCCCCcHHHHHHHHHHHHH
Q 001400 417 QEVTSKKDQEQYWSNPYLPYRYISPGKFAEAFHSYHTGKNLSEELAVPFDRRFNHPAALSTSKYGEKRSELLKTSFNWQL 496 (1085)
Q Consensus 417 ~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 496 (1085)
.++.+..++...... ..........++......+............ .........++|.|+..+++|.+
T Consensus 280 l~l~s~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~q~~~L~~R~~ 348 (613)
T KOG0061|consen 280 LDLLSVDSGTRELEE------AVRIAKLINKFSQTDNLKKTLEALEKSLSTS-----KKVEIGTSPSWWTQFKILLKRSL 348 (613)
T ss_pred HHHHccCCCchhHHh------HHHHHHHhhhccccchhhhhHHHHhhhcccc-----cccccccCCcHHHHHHHHHHHHh
Confidence 998874311000000 0000000111110000000000000000000 00001116789999999999999
Q ss_pred HHHhhChHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccccchhHHHHHHHHHHHHHHHHHH-HHHHHHhhhhhhhhhhcC
Q 001400 497 LLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHKTIDDGGLYLGALYFSMVIILFNGFT-EVSMLVAKLPVLYKHRDL 575 (1085)
Q Consensus 497 ~~~~r~~~~~~~~~~~~~~~ali~g~vf~~~~~~~~~~~~~~~~~g~lf~~l~~~~~~~~~-~~~~~~~~~~v~~k~r~~ 575 (1085)
....|++.++..|.++.+++++++|.+||+.+.+... .....|++||.+.+..+..+. .+..+..++++|.||+..
T Consensus 349 ~~~~R~~~~~~~r~~~~~~~~~~lg~~~~~~~~~~~~---~~~~~g~~~~~~~~~~f~~~~~~i~~f~~e~~~f~rE~~~ 425 (613)
T KOG0061|consen 349 KNIRRDPSLLLLRLIQSLVTGLLLGLLYLNLGNDAKG---IQNRLGLFFFILSFMTFLSMFGAVPVFPQERPIFLRETSS 425 (613)
T ss_pred HHHhhcHHHHHHHHHHHHHHHHHHHHHhhCCCCchHH---HHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHhc
Confidence 9999999999999999999999999999998654332 225578888888887666655 688999999999999999
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHhHcccCHHHHHHHHH
Q 001400 576 HFYPSWVYTIPSWALSIPTSLIESGFWVAVTYYVIGYDPNVVRFSRQLLLYFFLHQMSIGLFRVIGSLGRNMIVANTFGS 655 (1085)
Q Consensus 576 ~~y~~~ay~l~~~~~~iP~~~i~~~i~~~i~Y~~~g~~~~~~~f~~~~l~~~~~~~~~~~l~~~i~~~~~~~~va~~~~~ 655 (1085)
++|+.++|++++.+.++|+.++.+++|.+++|||+|+.++..+|+.++++.++...++.+++.+++++.++...|.++++
T Consensus 426 ~~Y~~s~y~la~~l~~lP~~~i~~~if~~i~Y~m~gl~~~~~~f~~~~l~~~~~~~~a~s~~~~i~~~~~~~~~a~~~~~ 505 (613)
T KOG0061|consen 426 GLYRLSSYYLAKTLAELPFLLVLSIIFSSIVYWMVGLNPGLSRFLYFLLIILLSSLVAESLGLFISAIVPNLSLATSLGP 505 (613)
T ss_pred CchhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhheeehHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccccCCCchhHHHHhHhhcHHHHHHHHHHHhhhcCCcccccCC--CCCcchHHHHHhhcCCCCCCcchH
Q 001400 656 FAMLVVMALGGFIISRDSIPKWWIWGFWVSPLMYAQNAASVNEFLGHSWDKKAG--NSNFSLGEAILRQRSLFPESYWYW 733 (1085)
Q Consensus 656 ~~~l~~~l~~Gf~i~~~~ip~~~~w~~~isp~~y~~~a~~~nef~~~~~~~~~~--~~~~~~g~~~l~~~~~~~~~~~~w 733 (1085)
+.++.+++++||+++.+.||.||.|+.|+|+..|+++++..|+|.+....|... ..+...+..+++..++...+ .|
T Consensus 506 ~~~~~f~l~~G~fi~~~~ip~~~~w~~~~S~~ry~~e~l~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~ 583 (613)
T KOG0061|consen 506 VLLLPFLLFGGFFINFDSIPKYFRWISYLSYFRYAFEALLINQFSGGSSRCFLSGNLCCESTGEDVLKQLGFEDSS--FW 583 (613)
T ss_pred HHHHHHHHHhhhhcCcccccHHHHHHHHHhHHHHHHHHHHHHHhhccccccccCcCCcccccHHHHHHhcCCcccc--cc
Confidence 999999999999999999999999999999999999999999998733333222 34567888999988886654 58
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC
Q 001400 734 IGVGAMLGYTLLFNALFTFFLSYLN 758 (1085)
Q Consensus 734 ~~~g~ll~~~~~f~~l~~~~l~~~~ 758 (1085)
.++.+++++.++|.++.++++.+..
T Consensus 584 ~~l~~l~~~~~~~~il~y~~L~~~~ 608 (613)
T KOG0061|consen 584 LDLLVLLAFIVFFRVLGYLALRFRV 608 (613)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhc
Confidence 8999999999999999999998754
|
|
| >TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-81 Score=769.92 Aligned_cols=569 Identities=24% Similarity=0.403 Sum_probs=479.6
Q ss_pred CcceeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCCCceEEEEccCCCCCCCC
Q 001400 145 RSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEM 224 (1085)
Q Consensus 145 ~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~~~~~~yv~Q~d~~~~~l 224 (1085)
+.++++|+|+|+.++|||+++|+|||||||||||++|+|+.++....+|+|.+||.+++....++.++||+|+|.+++++
T Consensus 35 ~~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~l 114 (617)
T TIGR00955 35 RPRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTL 114 (617)
T ss_pred cCccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccC
Confidence 34578999999999999999999999999999999999998765456899999999876544567899999999999999
Q ss_pred CHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCcc-
Q 001400 225 TVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEM- 303 (1085)
Q Consensus 225 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~- 303 (1085)
||+|||.|+++++.+..... . +.+.+++++++.|||++++||.||++.
T Consensus 115 TV~e~l~f~~~~~~~~~~~~-------~------------------------~~~~~v~~~l~~lgL~~~~~t~vg~~~~ 163 (617)
T TIGR00955 115 TVREHLMFQAHLRMPRRVTK-------K------------------------EKRERVDEVLQALGLRKCANTRIGVPGR 163 (617)
T ss_pred cHHHHHHHHHhcCCCCCCCH-------H------------------------HHHHHHHHHHHHcCchhcCcCccCCCCC
Confidence 99999999987764321100 0 112358999999999999999999864
Q ss_pred cccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEecC
Q 001400 304 LKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSE 383 (1085)
Q Consensus 304 ~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~~ 383 (1085)
.++|||||||||+||++|+.+|+++||||||+|||+.++.++++.|+++++. +.|+|+++|||+.+++++||++++|++
T Consensus 164 ~~~LSgGqrkRvsia~aL~~~p~vlllDEPtsgLD~~~~~~l~~~L~~l~~~-g~tvi~~~hq~~~~i~~~~D~i~ll~~ 242 (617)
T TIGR00955 164 VKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQK-GKTIICTIHQPSSELFELFDKIILMAE 242 (617)
T ss_pred CCCcCcchhhHHHHHHHHHcCCCEEEeeCCCcchhHHHHHHHHHHHHHHHhC-CCEEEEEeCCCCHHHHHHhceEEEeeC
Confidence 6899999999999999999999999999999999999999999999999864 789999999999999999999999999
Q ss_pred CeEEEecChhhHHHHHHhCCCCCCCCCChhHHHHhhcCcccccccccCCCCCCCCCChhHHHHHHHhCccccchhhhhcC
Q 001400 384 GQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVTSKKDQEQYWSNPYLPYRYISPGKFAEAFHSYHTGKNLSEELAV 463 (1085)
Q Consensus 384 G~iv~~G~~~~~~~~f~~~G~~~p~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (1085)
|+++|+|+++++.+||+++||+||++.|+|||+.++.+....... . .....+++.+.|+.+...++..+....
T Consensus 243 G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~~-----~--~~~~~~~~~~~~~~s~~~~~~~~~~~~ 315 (617)
T TIGR00955 243 GRVAYLGSPDQAVPFFSDLGHPCPENYNPADFYVQVLAVIPGSEN-----E--SRERIEKICDSFAVSDIGRDMLVNTNL 315 (617)
T ss_pred CeEEEECCHHHHHHHHHHcCCCCCCCCChHHHHHHHhhcCccccc-----c--hHHHHHHHHHHHhcchhhHHHHHHhhh
Confidence 999999999999999999999999999999999998865322110 0 011234455666555444433322221
Q ss_pred ccccc--C-CCcccccCCCCCCcHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccccchhH
Q 001400 464 PFDRR--F-NHPAALSTSKYGEKRSELLKTSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHKTIDDGGLY 540 (1085)
Q Consensus 464 ~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~ali~g~vf~~~~~~~~~~~~~~~~ 540 (1085)
..... . ..........+..+++.|+..+++|.++..+||+..+..++++.+++++++|++|++.+.+. ......
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~~~~~~i~~~li~G~~f~~~~~~~---~~~~~~ 392 (617)
T TIGR00955 316 WSGKAGGLVKDSENMEGIGYNASWWTQFYALLKRSWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGLTQ---KGVQNI 392 (617)
T ss_pred hhccccccccccccccccccCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCCH---HHHHHH
Confidence 11100 0 00011122456788999999999999999999999999999999999999999999986433 233445
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHhhhhhhhhhhcCcccchHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccHHHH
Q 001400 541 LGALYFSMVIILFNGF-TEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIPTSLIESGFWVAVTYYVIGYDPNVVRF 619 (1085)
Q Consensus 541 ~g~lf~~l~~~~~~~~-~~~~~~~~~~~v~~k~r~~~~y~~~ay~l~~~~~~iP~~~i~~~i~~~i~Y~~~g~~~~~~~f 619 (1085)
.|++|+.++..++..+ ..+..+..+|++|+||+..++|++++|++++.+.++|+.++.+++|.+++|||+|+.+++.+|
T Consensus 393 ~g~lf~~~~~~~f~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f 472 (617)
T TIGR00955 393 NGALFLFLTNMTFQNVFPVINVFTAELPVFLRETRSGLYRVSAYFLAKTIAELPLFIILPALFTSITYWMIGLRSGATHF 472 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhhheeccCCccHHHH
Confidence 7889999888877765 456677789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHcccCHHHHHHHHHHHHHHHHHHhhccccCCCchhHHHHhHhhcHHHHHHHHHHHhhh
Q 001400 620 SRQLLLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSFAMLVVMALGGFIISRDSIPKWWIWGFWVSPLMYAQNAASVNEF 699 (1085)
Q Consensus 620 ~~~~l~~~~~~~~~~~l~~~i~~~~~~~~va~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~w~~~isp~~y~~~a~~~nef 699 (1085)
+.+++++++...++.+++.++++++++..+|..+++++.+++++|+||+++.++||+||+|++|+||+.|++++++.|||
T Consensus 473 ~~f~l~~~l~~~~~~s~~~~i~~~~~~~~~a~~~~~~~~~~~~lf~G~~i~~~~ip~~~~W~~~isp~~ya~~al~~nef 552 (617)
T TIGR00955 473 LTFLFLVTLVANVATSFGYLISCAFSSTSMALTVGPPFVIPFLLFGGFFINSDSIPVYFKWLSYLSWFRYGNEGLLINQW 552 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhcccChhhccHHHHHHHHcCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcc-cccCCCC---CcchHHHHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhc
Q 001400 700 LGHSW-DKKAGNS---NFSLGEAILRQRSLFPESYWYWIGVGAMLGYTLLFNALFTFFLSYL 757 (1085)
Q Consensus 700 ~~~~~-~~~~~~~---~~~~g~~~l~~~~~~~~~~~~w~~~g~ll~~~~~f~~l~~~~l~~~ 757 (1085)
.+..+ .|...+. +...|+.+++.+++... ++|.+++++++++++|.++.+++|++.
T Consensus 553 ~~~~~~~c~~~~~~~~c~~~g~~~l~~~g~~~~--~~~~~~~il~~~~~~~~~l~~~~L~~~ 612 (617)
T TIGR00955 553 SDVDNIECTSANTTGPCPSSGEVILETLSFRNA--DLYLDLIGLVILIFFFRLLAYFALRIR 612 (617)
T ss_pred CCCccccccCcCcCCCCCcChHHHHHhcCCCcc--cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88765 3322111 23458999999988764 459999999999999999999999874
|
|
| >PLN03211 ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-80 Score=760.61 Aligned_cols=607 Identities=22% Similarity=0.324 Sum_probs=469.2
Q ss_pred CCCcEEEEeeeEEEEEEecCCCCCCChhhHHHHHHHH--HHHHHhHhcCCCcceeecccceeeEeCCeEEEEeCCCCCCh
Q 001400 97 LPKIEVRFQNLTVESFVHLGSRALPTIPNFIFNMTEA--LLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGK 174 (1085)
Q Consensus 97 ~~~~~v~~~~l~v~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGK 174 (1085)
.++++++|+|+++.+.......+...+ .+.... -..++.. ...++++|+|+|++++|||+++|+|||||||
T Consensus 35 ~~~~~~~~~~~~y~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~---~~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGK 107 (659)
T PLN03211 35 CYPITLKFMDVCYRVKFENMKNKGSNI----KRILGHKPKISDETR---QIQERTILNGVTGMASPGEILAVLGPSGSGK 107 (659)
T ss_pred CCceEEEEEeEEEEEccCCCccccccc----ccccccccccccccc---cCCCCeeeeCCEEEEECCEEEEEECCCCCCH
Confidence 357999999999997643111111111 111000 0011111 1124579999999999999999999999999
Q ss_pred hHHHHHHHhhhCCCCceeeEEEECCccCCCCCCCceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHH
Q 001400 175 TTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREK 254 (1085)
Q Consensus 175 STLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~ 254 (1085)
||||++|+|++++. ..+|+|.+||+++... ..+.++||+|++.+++.+||+||+.|++.++.+... ...
T Consensus 108 STLL~iLaG~~~~~-~~sG~I~inG~~~~~~-~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~~-------~~~-- 176 (659)
T PLN03211 108 STLLNALAGRIQGN-NFTGTILANNRKPTKQ-ILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSL-------TKQ-- 176 (659)
T ss_pred HHHHHHHhCCCCCC-ceeEEEEECCEECchh-hccceEEECcccccCCcCCHHHHHHHHHHhCCCCCC-------CHH--
Confidence 99999999998763 3599999999987532 235699999999999999999999998765422110 000
Q ss_pred HhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCcccccCchhhhhHHHHHHHHhCCCcEeEEeCCC
Q 001400 255 IAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEIS 334 (1085)
Q Consensus 255 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqkqRvsia~al~~~p~vlllDEpt 334 (1085)
+...+++++++.+||++++||.||+...++|||||||||+||++|+.+|+||||||||
T Consensus 177 ----------------------~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPt 234 (659)
T PLN03211 177 ----------------------EKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPT 234 (659)
T ss_pred ----------------------HHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCC
Confidence 0123478899999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEecCCeEEEecChhhHHHHHHhCCCCCCCCCChhH
Q 001400 335 NGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVAD 414 (1085)
Q Consensus 335 sgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~ad 414 (1085)
+|||+.++.++++.|+++++ .++|+|+++||+..+++++||+|++|++|+++|+|+.+++.+||+++||.||++.||||
T Consensus 235 sgLD~~~~~~l~~~L~~l~~-~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~~~~~f~~~G~~~P~~~NpAD 313 (659)
T PLN03211 235 SGLDATAAYRLVLTLGSLAQ-KGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMAYFESVGFSPSFPMNPAD 313 (659)
T ss_pred CCcCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHHHHHHHHHHCCCCCCCCCCHHH
Confidence 99999999999999999986 47888888888888899999999999999999999999999999999999999999999
Q ss_pred HHHhhcCcccccccccCCCCCCCCCChhHHHHHHHhCccccchhhhhcCc-ccc--cC-----CCcc-cccCCCCCCcHH
Q 001400 415 FLQEVTSKKDQEQYWSNPYLPYRYISPGKFAEAFHSYHTGKNLSEELAVP-FDR--RF-----NHPA-ALSTSKYGEKRS 485 (1085)
Q Consensus 415 fl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~-----~~~~-~~~~~~~~~~~~ 485 (1085)
|+.++.+...+.........+ .....+.+.|+.... +......... ... .. ..+. ......+..+++
T Consensus 314 f~ldv~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 389 (659)
T PLN03211 314 FLLDLANGVCQTDGVSEREKP---NVKQSLVASYNTLLA-PKVKAAIEMSHFPQANARFVGSASTKEHRSSDRISISTWF 389 (659)
T ss_pred HHHHHcCccccCCCccccccc---hHHHHHHHHHHhhcc-HHHHHHHhhhhhhcchhhhhhcccccccccCCCccCCCHH
Confidence 999998754321100000001 011233334432111 1111110000 000 00 0000 001122456899
Q ss_pred HHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccccchhHHHHHHHHHHHHHH-HHHHHHHHHHh
Q 001400 486 ELLKTSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHKTIDDGGLYLGALYFSMVIILF-NGFTEVSMLVA 564 (1085)
Q Consensus 486 ~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~ali~g~vf~~~~~~~~~~~~~~~~~g~lf~~l~~~~~-~~~~~~~~~~~ 564 (1085)
.|+..+++|.+.. +|+..+...|+++.+++|+++|++||+.+ ..+.+...|++||++++.++ ..+..+..+..
T Consensus 390 ~Q~~~L~~R~~~~-~r~~~~~~~r~~~~i~~~ll~G~lf~~~~-----~~~~~~r~g~lff~~~~~~~~~~~~~~~~f~~ 463 (659)
T PLN03211 390 NQFSILLQRSLKE-RKHESFNTLRVFQVIAAALLAGLMWWHSD-----FRDVQDRLGLLFFISIFWGVFPSFNSVFVFPQ 463 (659)
T ss_pred HHHHHHHHHHHHH-HhCcHHHHHHHHHHHHHHHHHHHHHhcCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999887 78888888999999999999999999874 22345668999998777654 55678888889
Q ss_pred hhhhhhhhhcCcccchHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHhHcc
Q 001400 565 KLPVLYKHRDLHFYPSWVYTIPSWALSIPTSLIESGFWVAVTYYVIGYDPNVVRFSRQLLLYFFLHQMSIGLFRVIGSLG 644 (1085)
Q Consensus 565 ~~~v~~k~r~~~~y~~~ay~l~~~~~~iP~~~i~~~i~~~i~Y~~~g~~~~~~~f~~~~l~~~~~~~~~~~l~~~i~~~~ 644 (1085)
+|++|+|||..++|++++|++++++.++|+.++.+++|.+++|||+|+.+++.+|+.+++++++...++.+++.++++++
T Consensus 464 er~v~~rE~~~~~Y~~~~Y~la~~l~elP~~~~~~~if~~i~Y~m~Gl~~~~~~F~~f~li~~l~~~~~~s~g~~i~a~~ 543 (659)
T PLN03211 464 ERAIFVKERASGMYTLSSYFMARIVGDLPMELILPTIFLTVTYWMAGLKPELGAFLLTLLVLLGYVLVSQGLGLALGAAI 543 (659)
T ss_pred hhHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeEcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCHHHHHHHHHHHHHHHHHHhhccccCCCchhHHHHhHhhcHHHHHHHHHHHhhhcCCcc-----cccCCCCCcchHHHH
Q 001400 645 RNMIVANTFGSFAMLVVMALGGFIISRDSIPKWWIWGFWVSPLMYAQNAASVNEFLGHSW-----DKKAGNSNFSLGEAI 719 (1085)
Q Consensus 645 ~~~~va~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~w~~~isp~~y~~~a~~~nef~~~~~-----~~~~~~~~~~~g~~~ 719 (1085)
++..+|+++++++++++++|+||+++ +||+||+|++|+||+.|+++++++|||.+.+. .|..+.+....+..+
T Consensus 544 ~~~~~a~~~~~~~~~~~~lfsGf~i~--~ip~~~~W~~ylS~~~y~~eal~~nef~~~~~~~~~~~C~~~~~~~~~~c~~ 621 (659)
T PLN03211 544 MDAKKASTIVTVTMLAFVLTGGFYVH--KLPSCMAWIKYISTTFYSYRLLINVQYGEGKRISSLLGCSLPHGSDRASCKF 621 (659)
T ss_pred CCHHHHHHHHHHHHHHHHHHhhhhHh--hchHHHHHHHHhCHHHHHHHHHHHHhcCCccccccccCCCCcccCCCCCCcc
Confidence 99999999999999999999999997 79999999999999999999999999976432 232211100011112
Q ss_pred HhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 001400 720 LRQRSLFPESYWYWIGVGAMLGYTLLFNALFTFFLSYLN 758 (1085)
Q Consensus 720 l~~~~~~~~~~~~w~~~g~ll~~~~~f~~l~~~~l~~~~ 758 (1085)
+....+. ....|.+++++++++++|.++.++++++.+
T Consensus 622 ~~~~~~~--~~~~~~~~~~l~~~~~~~~~l~~~~L~~~~ 658 (659)
T PLN03211 622 VEEDVAG--QISPATSVSVLIFMFVGYRLLAYLALRRIK 658 (659)
T ss_pred chhhhhc--ccchHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 2222222 234788999999999999999999997654
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-79 Score=795.40 Aligned_cols=597 Identities=23% Similarity=0.384 Sum_probs=496.2
Q ss_pred CCCCCcEEEEeeeEEEEEEecCCCCCCChhhHHHHHHHHHHHHHhHhcCCCcceeecccceeeEeCCeEEEEeCCCCCCh
Q 001400 95 LELPKIEVRFQNLTVESFVHLGSRALPTIPNFIFNMTEALLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGK 174 (1085)
Q Consensus 95 ~~~~~~~v~~~~l~v~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGK 174 (1085)
++...+.+.|+||+|+++...+.+. ....+.++.+|+|||+.++||++++|+|||||||
T Consensus 861 ~~~~~~~~~~~~v~y~v~~~~~~~~---------------------~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGK 919 (1470)
T PLN03140 861 LPFTPLAMSFDDVNYFVDMPAEMKE---------------------QGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGK 919 (1470)
T ss_pred cCCCcceEEEEEEEEEEccCccccc---------------------cccCcCCceEeeCcEEEEECCeEEEEECCCCCCH
Confidence 3455678999999999864311000 0111234579999999999999999999999999
Q ss_pred hHHHHHHHhhhCCCCceeeEEEECCccCCCCCCCceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHH
Q 001400 175 TTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREK 254 (1085)
Q Consensus 175 STLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~ 254 (1085)
||||++|+|+.++. ..+|+|.+||++.++...++.+|||+|+|.|++.+||+|||.|++.++.+... ...
T Consensus 920 TTLL~~LaG~~~~g-~~~G~I~inG~~~~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~-------~~~-- 989 (1470)
T PLN03140 920 TTLMDVLAGRKTGG-YIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEV-------SKE-- 989 (1470)
T ss_pred HHHHHHHcCCCCCC-cccceEEECCccCChHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCC-------CHH--
Confidence 99999999986542 46899999998875444457799999999999999999999998765422110 000
Q ss_pred HhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCcccccCchhhhhHHHHHHHHhCCCcEeEEeCCC
Q 001400 255 IAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEIS 334 (1085)
Q Consensus 255 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqkqRvsia~al~~~p~vlllDEpt 334 (1085)
+....++++++.+||.+++|+.||+..+++|||||||||+||++|+.+|++|||||||
T Consensus 990 ----------------------~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPT 1047 (1470)
T PLN03140 990 ----------------------EKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPT 1047 (1470)
T ss_pred ----------------------HHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCC
Confidence 0123488999999999999999998878899999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEecC-CeEEEecCh----hhHHHHHHhC-CC-CCC
Q 001400 335 NGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSE-GQIVYQGPR----VSVLDFFASM-GF-SCP 407 (1085)
Q Consensus 335 sgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~~-G~iv~~G~~----~~~~~~f~~~-G~-~~p 407 (1085)
+|||+.++..+++.|+++++. ++|+|+++||+..+++++||++++|++ |+++|+|+. +++.+||+++ |+ +||
T Consensus 1048 sgLD~~~a~~v~~~L~~l~~~-g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v~~G~~~~~~~~~~~yF~~~~g~~~~p 1126 (1470)
T PLN03140 1048 SGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYSGPLGRNSHKIIEYFEAIPGVPKIK 1126 (1470)
T ss_pred CCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEEEECCcccccccHHHHHHhcCCCCCCC
Confidence 999999999999999999864 788899999988889999999999996 899999996 6899999998 66 599
Q ss_pred CCCChhHHHHhhcCcccccccccCCCCCCCCCChhHHHHHHHhCccccchhhhhcCcccccCCCcccccCCCCCCcHHHH
Q 001400 408 KRKNVADFLQEVTSKKDQEQYWSNPYLPYRYISPGKFAEAFHSYHTGKNLSEELAVPFDRRFNHPAALSTSKYGEKRSEL 487 (1085)
Q Consensus 408 ~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 487 (1085)
++.|||||+.++++..... ....++++.|+.+...++..+............+......+|..+++.|
T Consensus 1127 ~~~NPAd~~l~v~~~~~~~------------~~~~d~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q 1194 (1470)
T PLN03140 1127 EKYNPATWMLEVSSLAAEV------------KLGIDFAEHYKSSSLYQRNKALVKELSTPPPGASDLYFATQYSQSTWGQ 1194 (1470)
T ss_pred CCCCchhhhhhhhcccccc------------cccchHHHHHhccHHHHHHHHHHHHhccCCCCccccccCccccCCHHHH
Confidence 9999999999997643211 0123678888887766555443321111000111111235688999999
Q ss_pred HHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccccchhHHHHHHHHHHHHHHHHHHH-HHHHHhhh
Q 001400 488 LKTSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHKTIDDGGLYLGALYFSMVIILFNGFTE-VSMLVAKL 566 (1085)
Q Consensus 488 ~~~~~~r~~~~~~r~~~~~~~~~~~~~~~ali~g~vf~~~~~~~~~~~~~~~~~g~lf~~l~~~~~~~~~~-~~~~~~~~ 566 (1085)
+..|++|+++.++|++.++..|+++.+++|+++|++||+.+.+..+.++.+...|++|+++++..++.+.. ++.+..+|
T Consensus 1195 ~~~l~~R~~~~~~R~p~~~~~r~~~~i~~al~~G~~f~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~p~~~~eR 1274 (1470)
T PLN03140 1195 FKSCLWKQWWTYWRSPDYNLVRFFFTLAAALMVGTIFWKVGTKRSNANDLTMVIGAMYAAVLFVGINNCSTVQPMVAVER 1274 (1470)
T ss_pred HHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHhhCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998655555555566899999888877766544 46677799
Q ss_pred hhhhhhhcCcccchHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHhHcccC
Q 001400 567 PVLYKHRDLHFYPSWVYTIPSWALSIPTSLIESGFWVAVTYYVIGYDPNVVRFSRQLLLYFFLHQMSIGLFRVIGSLGRN 646 (1085)
Q Consensus 567 ~v~~k~r~~~~y~~~ay~l~~~~~~iP~~~i~~~i~~~i~Y~~~g~~~~~~~f~~~~l~~~~~~~~~~~l~~~i~~~~~~ 646 (1085)
++|+|||..++|++++|++++++.++|+.++.+++|.+++|||+||.+++..|+.++++.++...++.+++.++++++++
T Consensus 1275 ~vf~REr~~~~Y~~~~y~la~~l~eiP~~~~~~~if~~i~Y~m~Gl~~~~~~f~~~~~~~~l~~~~~~~~g~~~~a~~p~ 1354 (1470)
T PLN03140 1275 TVFYRERAAGMYSALPYAIAQVVCEIPYVLIQTTYYTLIVYAMVAFEWTAAKFFWFYFISFFSFLYFTYYGMMTVSLTPN 1354 (1470)
T ss_pred HHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccCCCchhHHHHhHhhcHHHHHHHHHHHhhhcCCcccccCCCC-CcchHHHH-HhhcC
Q 001400 647 MIVANTFGSFAMLVVMALGGFIISRDSIPKWWIWGFWVSPLMYAQNAASVNEFLGHSWDKKAGNS-NFSLGEAI-LRQRS 724 (1085)
Q Consensus 647 ~~va~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~w~~~isp~~y~~~a~~~nef~~~~~~~~~~~~-~~~~g~~~-l~~~~ 724 (1085)
..+|..+++++..++++|+||+++++.||.||+|+||+||+.|++++++.|||.+....+.+++. +...+.++ +..+|
T Consensus 1355 ~~~A~~~~~~~~~~~~lf~Gf~i~~~~iP~~~~W~~~isp~~y~~~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g 1434 (1470)
T PLN03140 1355 QQVAAIFAAAFYGLFNLFSGFFIPRPKIPKWWVWYYWICPVAWTVYGLIVSQYGDVEDTIKVPGGAPDPTIKWYIQDHYG 1434 (1470)
T ss_pred HHHHHHHHHHHHHHHHHHeeeccChHHCchHHHHHHHcCHHHHHHhhhHHHHhCCCCCcccCCCCCCCCcHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999887765554431 12345454 66778
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 001400 725 LFPESYWYWIGVGAMLGYTLLFNALFTFFLSYLNP 759 (1085)
Q Consensus 725 ~~~~~~~~w~~~g~ll~~~~~f~~l~~~~l~~~~~ 759 (1085)
+.. .|.|.+++++++|+++|.+++.+++++++.
T Consensus 1435 ~~~--~~~~~~~~il~~~~~~f~~~~~~~~~~~~~ 1467 (1470)
T PLN03140 1435 YDP--DFMGPVAAVLVGFTVFFAFIFAFCIRTLNF 1467 (1470)
T ss_pred cCc--ccccchhhhHHHHHHHHHHHHHHHHHHhhc
Confidence 764 467899999999999999999999999875
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-75 Score=709.40 Aligned_cols=782 Identities=19% Similarity=0.243 Sum_probs=406.5
Q ss_pred CCCcceeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCC---CceEEEEccCCC
Q 001400 143 GNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP---PRTSAYVSQQDW 219 (1085)
Q Consensus 143 ~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~---~~~~~yv~Q~d~ 219 (1085)
+.+++..||+|+|+.|++|+.++|+|||||||||+++.|.+.++|. +|+|.++|.++.++.. +.++|.|+|+|.
T Consensus 361 PsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~---~G~V~idG~di~~~~~~~lr~~iglV~QePv 437 (1228)
T KOG0055|consen 361 PSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPT---SGEVLIDGEDIRNLNLKWLRSQIGLVSQEPV 437 (1228)
T ss_pred CCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCC---CceEEEcCccchhcchHHHHhhcCeeeechh
Confidence 3445778999999999999999999999999999999999999987 9999999999987753 578999999997
Q ss_pred CCCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccc
Q 001400 220 QVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLV 299 (1085)
Q Consensus 220 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~v 299 (1085)
+|. .||+|||.|+-. ....+.+.++++.. + ..+. +..|++.+||.|
T Consensus 438 lF~-~tI~eNI~~G~~----dat~~~i~~a~k~a---n-----------------------a~~f---i~~lp~g~~T~v 483 (1228)
T KOG0055|consen 438 LFA-TTIRENIRYGKP----DATREEIEEAAKAA---N-----------------------AHDF---ILKLPDGYDTLV 483 (1228)
T ss_pred hhc-ccHHHHHhcCCC----cccHHHHHHHHHHc---c-----------------------HHHH---HHhhHHhhcccc
Confidence 655 699999998631 11111112222110 0 0122 345888999999
Q ss_pred cCcccccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEE
Q 001400 300 GDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVI 379 (1085)
Q Consensus 300 g~~~~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii 379 (1085)
|++++ +|||||||||+|||||+.+|+|||||||||+||+.+...+.+.|.+..+ |+|+|+ +.|..+.+-+ +|+|+
T Consensus 484 ge~g~-qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~--grTTiv-VaHRLStIrn-aD~I~ 558 (1228)
T KOG0055|consen 484 GERGV-QLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKASK--GRTTIV-VAHRLSTIRN-ADKIA 558 (1228)
T ss_pred cCCCC-CCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhhc--CCeEEE-Eeeehhhhhc-cCEEE
Confidence 98766 5999999999999999999999999999999999999999999998754 667777 5677777766 99999
Q ss_pred EecCCeEEEecChhhHHHHHHhCCCCCCCCCChhHHH--HhhcCcccccccccCCCCCCCCCChhHHHHHHHhCccccch
Q 001400 380 LLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFL--QEVTSKKDQEQYWSNPYLPYRYISPGKFAEAFHSYHTGKNL 457 (1085)
Q Consensus 380 ~L~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~adfl--~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (1085)
+|++|+|++.|+++|++.. ..-.++.+ |+.....+. ..+..... .+.....+.+......
T Consensus 559 v~~~G~IvE~G~h~ELi~~----------~G~Y~~lv~~Q~~~~~~~~-~~~~~~~~-------~~~~~s~~~s~~~~~~ 620 (1228)
T KOG0055|consen 559 VMEEGKIVEQGTHDELIAL----------GGIYSSLVRLQELEKAAED-EEEEESLK-------EERSRSLKSSSSSPSL 620 (1228)
T ss_pred EEECCEEEEecCHHHHHhc----------cchHHHHHHHHhhhhhhhc-cccccchh-------hhhhhccccccccccc
Confidence 9999999999999999862 11112222 122221111 00000000 0000000000000000
Q ss_pred hhhh-cCcccccCCCcccccCCCCCCcHHHHHHHHHHHHHHHHhhChHHHHHHHHHHH-------HHHHHHHHHh---cC
Q 001400 458 SEEL-AVPFDRRFNHPAALSTSKYGEKRSELLKTSFNWQLLLMKRNSFIYVFKFIQLL-------IVALITMTVF---FR 526 (1085)
Q Consensus 458 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~-------~~ali~g~vf---~~ 526 (1085)
.... .........+.... ..+. ..+.....+.|-+...+.++.+.+...+..+ +.+.+++.++ +.
T Consensus 621 ~~~~~~~~~~~~~~~~e~~-~~~~---~~~~~~~s~~~i~k~~~pe~~~l~lG~i~a~i~G~~~P~fa~~~s~~~~~f~~ 696 (1228)
T KOG0055|consen 621 SRGSNRSNLLSVKPEGEDP-EEPV---SEEDEKVSFWRIFKLNKPEWPYLLLGSLGAAIRGATYPLFAYVFSQVLEAFYP 696 (1228)
T ss_pred cCCcccccccccccccccc-cccc---ccccccccHHHHHHhccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhC
Confidence 0000 00000000000000 0000 0000112233333333444444333333222 2333333332 22
Q ss_pred CCCCCCccccchhHHHHHHHHHHHHHH----------HHHHHHHHHHhhhhhhhh--hhcCcccchHH--HHHH-HHHHH
Q 001400 527 TTMHHKTIDDGGLYLGALYFSMVIILF----------NGFTEVSMLVAKLPVLYK--HRDLHFYPSWV--YTIP-SWALS 591 (1085)
Q Consensus 527 ~~~~~~~~~~~~~~~g~lf~~l~~~~~----------~~~~~~~~~~~~~~v~~k--~r~~~~y~~~a--y~l~-~~~~~ 591 (1085)
.+. +........+..+|.++....+ .-+.+....-.+...|.+ ..+..||.--- -.+. ....+
T Consensus 697 ~~~--~~~~~~~~~~al~f~~l~~~~~i~~~~q~~~f~~~ge~Lt~R~R~~~F~~ll~qd~~wFD~~~nsg~l~~RLa~D 774 (1228)
T KOG0055|consen 697 PDD--DELKREVRAWALIFLGLGIVSGITNFLQHYFFGIAGEKLTKRLRSMMFRALLRQEVGWFDDPENSGALSSRLATD 774 (1228)
T ss_pred CCh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCccchHHHHHHhcc
Confidence 221 1111112224445544433221 112221111122222222 12333432111 1111 11111
Q ss_pred H---------HHHHHHHHHHhhhhhhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHhHcccCHHH---------HHHH
Q 001400 592 I---------PTSLIESGFWVAVTYYVIGYDPNVVRFSRQLLLYFFLHQMSIGLFRVIGSLGRNMIV---------ANTF 653 (1085)
Q Consensus 592 i---------P~~~i~~~i~~~i~Y~~~g~~~~~~~f~~~~l~~~~~~~~~~~l~~~i~~~~~~~~v---------a~~~ 653 (1085)
. .++.+-..+-.+++-..++|...+.--+.-+.+.-++........+++......... ...+
T Consensus 775 a~~vr~~v~~rl~~vv~~~~~~~~~iiiaf~~~W~lalv~la~~Pll~~~~~~~~~~~~~~~~~~~~~~~ea~~iA~eai 854 (1228)
T KOG0055|consen 775 ASNVRAAVGDRLSLVVQNIAAVIIGIIIAFIYGWRLALVVLATFPLLILSGYLQKKFLKGFSKDDKKAYEEASKIAIEAV 854 (1228)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 1 111111111111111111111000000000000001111111111222221111110 0001
Q ss_pred HHHHHHHHHHHhhccccC---CCchhH--HHHhHhhcHHHHHHHHHHHhhhcCCcccccCCCCCcchHHHHHhhcCCCCC
Q 001400 654 GSFAMLVVMALGGFIISR---DSIPKW--WIWGFWVSPLMYAQNAASVNEFLGHSWDKKAGNSNFSLGEAILRQRSLFPE 728 (1085)
Q Consensus 654 ~~~~~l~~~l~~Gf~i~~---~~ip~~--~~w~~~isp~~y~~~a~~~nef~~~~~~~~~~~~~~~~g~~~l~~~~~~~~ 728 (1085)
..+=.+..+..-..++.. ..-+++ ..+--+++-+.|++....+--..+. .+..|......-.+.+.
T Consensus 855 ~NIrTV~al~~e~~~~~~y~~~l~~p~~~~~~~~~i~gl~f~~sqs~~~~~~A~---------~f~~G~~Li~~g~~~~~ 925 (1228)
T KOG0055|consen 855 SNIRTVAALCAEEKFMELYKEELEKPRKSSFKRGLISGLGFGFSQSLLFFVYAL---------SFWYGARLISNGEMTFE 925 (1228)
T ss_pred HhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHhHHHHhcCCcCHH
Confidence 111000000000000000 000000 0111112222222211110000000 00000000000000000
Q ss_pred CcchHHHHHHHHHH-HHHHHH-HHHHHHHhcCCCCCcccccchhhhhhHhhhhcCcchhHHHHhhhhcccccCCcccccC
Q 001400 729 SYWYWIGVGAMLGY-TLLFNA-LFTFFLSYLNPLGKQQAVVSKKELQERDRRRKGENVVIELREYLQRSSSLNGKYFKQK 806 (1085)
Q Consensus 729 ~~~~w~~~g~ll~~-~~~f~~-l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 (1085)
. ++-.| ++.|.. ....+..|.....+..... ...-....+.+..++.. ..
T Consensus 926 ~--------~~~vf~~l~~ta~~~~~~~s~~Pd~~ka~~Aa------------------~~iF~i~dr~~~i~~~~--~~ 977 (1228)
T KOG0055|consen 926 D--------VFRVFMALSFTAMALGQASSYAPDISKAKIAA------------------GSIFEILDRKPTIDPDS--TS 977 (1228)
T ss_pred H--------HHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHH------------------HHHHHHhcCCCCCCCCC--CC
Confidence 0 00000 001100 1111122221111000000 00000000000000000 11
Q ss_pred CcccccccceeeeccceeeeeccccccccccccCCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeee
Q 001400 807 GMVLPFQPLSMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEG 886 (1085)
Q Consensus 807 ~~~~~~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G 886 (1085)
+...+-..-.+.|+|+.+.++.. ++.++|+|+|++|++|+.+||||||||||||.+.+|-+... +..|
T Consensus 978 ~~~~~~~~G~I~~~~V~F~YPsR----------P~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYd--p~~G 1045 (1228)
T KOG0055|consen 978 GGKLPNVKGDIEFRNVSFAYPTR----------PDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYD--PDAG 1045 (1228)
T ss_pred CCccccceeEEEEeeeEeeCCCC----------CCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcC--CCCC
Confidence 11222223357888888888643 56789999999999999999999999999999999987655 6799
Q ss_pred EEEEcCccCCh---hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcC-------CCcc
Q 001400 887 DIYISGYPKRQ---ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVE-------LTSL 956 (1085)
Q Consensus 887 ~i~i~g~~~~~---~~~~~~~gy~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------l~~~ 956 (1085)
.|.|||++++. ...|+++|.|.|+|.+|. -|++||+.|+. . +++. +.+.++.+..+ |.+-
T Consensus 1046 ~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~-~TIrENI~YG~--~---~vs~----~eIi~Aak~ANaH~FI~sLP~G 1115 (1228)
T KOG0055|consen 1046 KVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFN-GTIRENIAYGS--E---EVSE----EEIIEAAKLANAHNFISSLPQG 1115 (1228)
T ss_pred eEEECCcccccCCHHHHHHhcceeccCchhhc-ccHHHHHhccC--C---CCCH----HHHHHHHHHhhhHHHHhcCcCc
Confidence 99999998764 457889999999999985 59999999981 1 1222 12333333332 3333
Q ss_pred cccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhc
Q 001400 957 SGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESF 1036 (1085)
Q Consensus 957 ~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~ 1036 (1085)
.|..+|..| .+||||||||++||||+++||+||||||+||+||.++.+.|+++|++. ..|+|.|+|+|+++ .++.+
T Consensus 1116 yDT~vGerG-~QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a-~~gRT~IvIAHRLS--TIqna 1191 (1228)
T KOG0055|consen 1116 YDTRVGERG-VQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRA-MEGRTTIVIAHRLS--TIQNA 1191 (1228)
T ss_pred ccCccCccc-CcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHh-hcCCcEEEEecchh--hhhcC
Confidence 455555444 479999999999999999999999999999999999999999999996 47999999999986 67889
Q ss_pred CEEEEEecCcEEEEecCC
Q 001400 1037 DELLFMKRGGELIYAGPL 1054 (1085)
Q Consensus 1037 d~il~l~~gG~~~~~g~~ 1054 (1085)
|.|.|++ +|++++.|.-
T Consensus 1192 D~I~Vi~-~G~VvE~GtH 1208 (1228)
T KOG0055|consen 1192 DVIAVLK-NGKVVEQGTH 1208 (1228)
T ss_pred CEEEEEE-CCEEEecccH
Confidence 9999998 5799999873
|
|
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-77 Score=724.40 Aligned_cols=559 Identities=26% Similarity=0.386 Sum_probs=475.3
Q ss_pred cceeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCCCceEEEEccCCCCCCCCC
Q 001400 146 SKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMT 225 (1085)
Q Consensus 146 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lT 225 (1085)
.++++|+||+|.++||.+|||||+|||||||||++||||... ..++|+|++||++.++...+|.+|||.|+|.|.+++|
T Consensus 802 ~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~-G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~~~T 880 (1391)
T KOG0065|consen 802 GTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTG-GYIEGDILISGFPKDQETFARVSGYVEQQDIHSPELT 880 (1391)
T ss_pred cceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCccc-ceEEeEEEECCeeCchhhhccccceeecccccCcccc
Confidence 567899999999999999999999999999999999999754 3689999999999987778899999999999999999
Q ss_pred HHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCcccc
Q 001400 226 VRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLK 305 (1085)
Q Consensus 226 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 305 (1085)
|||.|.|+|.++.+.+. ++ .+....||+|++.|+|++++|.+||+.+ +
T Consensus 881 VrESL~fSA~LRlp~~v-----------------~~--------------~ek~~yVe~Vi~lleL~~~~daiVG~~G-~ 928 (1391)
T KOG0065|consen 881 VRESLRFSAALRLPKEV-----------------SD--------------EEKYEYVEEVIELLELKEYADALVGLPG-S 928 (1391)
T ss_pred hHHHHHHHHHHcCCCcC-----------------CH--------------HHHHHHHHHHHHHhCchhhhhhhccCCC-C
Confidence 99999999988754321 11 1123469999999999999999999877 9
Q ss_pred cCchhhhhHHHHHHHHhCCC-cEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEec-C
Q 001400 306 GISGGQKKRLTTGELLVGPA-RVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLS-E 383 (1085)
Q Consensus 306 ~LSGGqkqRvsia~al~~~p-~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~-~ 383 (1085)
|||..||||++||-.|+.+| .||||||||||||+.++..|++.+|++++ .|+|++|+||||+.++++.||++++|. .
T Consensus 929 GLs~eQRKrLTIgVELvA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~-tGqtIlCTIHQPS~~ife~FD~LLLLkrG 1007 (1391)
T KOG0065|consen 929 GLSTEQRKRLTIGVELVANPSSILFLDEPTSGLDSQAAAIVMRFLRKLAD-TGQTILCTIHQPSIDIFEAFDELLLLKRG 1007 (1391)
T ss_pred CCCHHHhceeeEEEEEecCCceeEEecCCCCCccHHHHHHHHHHHHHHHh-cCCeEEEEecCCcHHHHHHHhHHHHHhcC
Confidence 99999999999999999999 99999999999999999999999999998 589999999999999999999999995 6
Q ss_pred CeEEEecChh----hHHHHHHhCC-CCCCCCCChhHHHHhhcCcccccccccCCCCCCCCCChhHHHHHHHhCccccchh
Q 001400 384 GQIVYQGPRV----SVLDFFASMG-FSCPKRKNVADFLQEVTSKKDQEQYWSNPYLPYRYISPGKFAEAFHSYHTGKNLS 458 (1085)
Q Consensus 384 G~iv~~G~~~----~~~~~f~~~G-~~~p~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (1085)
|++||.||.. .+++||++.| .+||+..|||||..|+.+...+.. ...++++.|+.+..+++..
T Consensus 1008 GqtVY~G~lG~~s~~li~YFes~~~~~~~~~~NPA~~mLevi~~~~~~~------------~~~D~a~~w~~S~e~k~~~ 1075 (1391)
T KOG0065|consen 1008 GQTVYFGPLGENSSKLIEYFESIGGVKCISDENPAEWMLEVIGAGAEAS------------LSVDFAEIWKNSEEYKRNK 1075 (1391)
T ss_pred CeEEEecCcccccHHHHHHHHhcCCccCCCCCChHHHHHhhcccccccc------------cCccHHHHHhccHHHHHHH
Confidence 8999999974 4667999997 899999999999999987644321 1237899999999888877
Q ss_pred hhhc---CcccccCCCcccccCCCCCCcHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccc
Q 001400 459 EELA---VPFDRRFNHPAALSTSKYGEKRSELLKTSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHKTID 535 (1085)
Q Consensus 459 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~ali~g~vf~~~~~~~~~~~ 535 (1085)
+++. .+... .........+|..+.|.|++.|++|+++.+||++.+...|++..++.++++|..||+.+ .+.+
T Consensus 1076 e~v~~l~~~~~~--~~~~~~~~~~fa~s~~~Q~k~~l~Rq~~syWRsp~y~~ar~~~~i~~gl~iGf~F~~~g---~~~q 1150 (1391)
T KOG0065|consen 1076 ELVKELSQPPPG--FSTDLEFKTRFAQSLWYQFKLCLWRQFLSYWRSPDYLMARFALTIVAGLFIGFTFWKVG---HNVQ 1150 (1391)
T ss_pred HHHHHHhcCCcc--CCcccccccccchhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhheeeeeecC---CcHH
Confidence 6644 33322 12223334568999999999999999999999999999999999999999999999998 3455
Q ss_pred cchhHHHHHHHHHHHHHHHHHH-HHHHHHhhhhhhhhhhcCcccchHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccc
Q 001400 536 DGGLYLGALYFSMVIILFNGFT-EVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIPTSLIESGFWVAVTYYVIGYDP 614 (1085)
Q Consensus 536 ~~~~~~g~lf~~l~~~~~~~~~-~~~~~~~~~~v~~k~r~~~~y~~~ay~l~~~~~~iP~~~i~~~i~~~i~Y~~~g~~~ 614 (1085)
+.++.++++|.++++...+... .......++-++||||..++|+.++|+++..++++|+.++.+.+|.+++||++||..
T Consensus 1151 ~lqn~m~a~yma~v~~~~~~~~~~~~~v~~e~~y~~RE~~s~mYs~~~~~~aq~~vEiP~~l~~stl~~~~~Y~~iGF~~ 1230 (1391)
T KOG0065|consen 1151 GLQNAMGAAYMATVFSGPNNNQLQQPAVATERLYEYRERASNMYSWTPFALAQVLVEIPYNLLQSTLFFLITYYPIGFYW 1230 (1391)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhHHhhhhhheeeecccCcccHHHHHHHHHHHHHHHHHHHHHHhheeeeeeccchh
Confidence 6677789988887776554443 455566788999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhHcccCHHHHHHHHHHHHHHHHHHhhccccCCCchhHHHHhHhhcHHHHHHHHH
Q 001400 615 NVVRFSRQLLLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSFAMLVVMALGGFIISRDSIPKWWIWGFWVSPLMYAQNAA 694 (1085)
Q Consensus 615 ~~~~f~~~~l~~~~~~~~~~~l~~~i~~~~~~~~va~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~w~~~isp~~y~~~a~ 694 (1085)
++.+|+.+++..++.......++.++.+++|+..+|..+.+++..++.+|+||++++..||.||+|+||+||+.|..+++
T Consensus 1231 ~a~~~~~f~~~~~~f~lYf~~~Gmm~~s~tPn~~~Aav~~s~~~s~~~~F~G~l~p~~~iP~fW~wmy~lsP~ty~l~gl 1310 (1391)
T KOG0065|consen 1231 TASKFFWFLLFMFIFFLYFTTLGMMLVSLTPNLQTAAVIASLFFSFWNLFSGFLQPRSLIPKFWIWMYYLSPVTYTLEGL 1310 (1391)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhcccccccccccceeeeeeecCcHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcCCcccccCCC-------CCcchHHHHHhhcC----CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhc
Q 001400 695 SVNEFLGHSWDKKAGN-------SNFSLGEAILRQRS----LFPESYWYWIGVGAMLGYTLLFNALFTFFLSYL 757 (1085)
Q Consensus 695 ~~nef~~~~~~~~~~~-------~~~~~g~~~l~~~~----~~~~~~~~w~~~g~ll~~~~~f~~l~~~~l~~~ 757 (1085)
....+.+..-.|.... ...+.|+.+...++ +..+... ...++.+.|.+.+..++.+..+|.
T Consensus 1311 i~~~~~d~~v~c~~~e~~~~~pp~g~tcge~m~~~~~~~~Gy~~n~~a--~~~c~~c~y~v~~~~l~~f~~~y~ 1382 (1391)
T KOG0065|consen 1311 ISSQLGDVEVTCEDSEMNYFDPPSGQTCGEFMEDFFGEGTGYLHNPLA--TTACVYCAYTVADAFLAAFNIKYL 1382 (1391)
T ss_pred HHHHhCCCceeeecCCccccCCCCCcCHHHHHHHHhccCcceeccCcc--eeEEEEeeeehHHHHHHHHHHHHH
Confidence 9998887655553322 34566776665555 3222111 111223445666666666666654
|
|
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-73 Score=711.77 Aligned_cols=757 Identities=21% Similarity=0.265 Sum_probs=403.7
Q ss_pred ceeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCCCceEEEEccCCCCCCCCCH
Q 001400 147 KLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTV 226 (1085)
Q Consensus 147 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV 226 (1085)
..+.|+|||+.|++|++++|+||.|||||+||.+|.|.++. .+|+|.++| .++||||++|++ +.||
T Consensus 533 ~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~---~sG~v~v~g----------siaYv~Q~pWI~-ngTv 598 (1381)
T KOG0054|consen 533 PEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPK---LSGSVAVNG----------SVAYVPQQPWIQ-NGTV 598 (1381)
T ss_pred CcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCccc---ccceEEEcC----------eEEEeccccHhh-CCcH
Confidence 34489999999999999999999999999999999999875 499999999 599999999955 5699
Q ss_pred HHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCccccc
Q 001400 227 RETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKG 306 (1085)
Q Consensus 227 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 306 (1085)
||||.|+.... ..||+.+.++|.+++|..+.|.+| .|.||++++ +
T Consensus 599 reNILFG~~~d--~~rY~~Vi~aC~L~~Dle~Lp~GD--------------------------------~TeIGErGi-n 643 (1381)
T KOG0054|consen 599 RENILFGSPYD--EERYDKVIKACALKKDLEILPFGD--------------------------------LTEIGERGI-N 643 (1381)
T ss_pred HHhhhcCcccc--HHHHHHHHHHccCHhHHhhcCCCC--------------------------------cceecCCcc-C
Confidence 99999987654 578999999999998888777776 499998766 7
Q ss_pred CchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEecCCeE
Q 001400 307 ISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQI 386 (1085)
Q Consensus 307 LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~~G~i 386 (1085)
|||||||||++|||++++++|++||+|.|++|+++..+|++.+-. ..++++|+|.++| .-+..+.+|.|++|++|+|
T Consensus 644 LSGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~--~~L~~KT~ILVTH-ql~~L~~ad~Iivl~~G~I 720 (1381)
T KOG0054|consen 644 LSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIR--GLLRGKTVILVTH-QLQFLPHADQIIVLKDGKI 720 (1381)
T ss_pred CcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHH--hhhcCCEEEEEeC-chhhhhhCCEEEEecCCeE
Confidence 999999999999999999999999999999999999999986552 2344455555666 5677889999999999999
Q ss_pred EEecChhhHHH---HHHhCCCCCCCCCChhHHHHhhcCcccccccccCCCCCCCCCChhHHHHHHHhCccccchhhhhcC
Q 001400 387 VYQGPRVSVLD---FFASMGFSCPKRKNVADFLQEVTSKKDQEQYWSNPYLPYRYISPGKFAEAFHSYHTGKNLSEELAV 463 (1085)
Q Consensus 387 v~~G~~~~~~~---~f~~~G~~~p~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (1085)
+..|+.+++.+ +|+++ +.+....++.. .....+....+..+. +. +.........+. ..
T Consensus 721 ~~~Gty~el~~~~~~~~~l-------------~~~~~~~~~~~---~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~-~~ 781 (1381)
T KOG0054|consen 721 VESGTYEELLKSGGDFAEL-------------AHEEESEQEEE---ASEKDLESGESSRES-ES-RSLESLSSEEEK-SK 781 (1381)
T ss_pred ecccCHHHHHhcchhHHHH-------------hhccchhhccc---cccccccccccccch-hh-hhhhhhcccccc-cc
Confidence 99999999973 23222 00000000000 000000000000000 00 000000000000 00
Q ss_pred cccccCCCcccccC---CCCCCcHHHHHHHHHHHHHHHHhhChHHHH-HHHHHHHHHHHHHHHHhcCCCC-CCC--cc--
Q 001400 464 PFDRRFNHPAALST---SKYGEKRSELLKTSFNWQLLLMKRNSFIYV-FKFIQLLIVALITMTVFFRTTM-HHK--TI-- 534 (1085)
Q Consensus 464 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~r~~~~~~r~~~~~~-~~~~~~~~~ali~g~vf~~~~~-~~~--~~-- 534 (1085)
..+ ..+..... ...+.-.| ...+.+........... ..+.+.....+.+++-||-..+ +.. ..
T Consensus 782 -~~~--~~~~~~~~~ee~~~G~v~~-----~vY~~Y~~a~~g~~~~~~~~~~~v~~~~~~~~~~~WLs~W~~~~~~~~~~ 853 (1381)
T KOG0054|consen 782 -DEK--EEEDKLVQEEERETGKVSW-----SVYKKYIKAAGGFLLVLLILLLFVLTQVLQIASNYWLSYWTDDGEDNGTT 853 (1381)
T ss_pred -ccc--chhhHHHHHHHHhcCEeeH-----HHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccc
Confidence 000 00000000 00011011 11122222211111111 1122222223333333332111 111 01
Q ss_pred -ccchhHHHHHHHHHHHH-HHHHHHHHHHHHhhhhhhhhhhcCcccchHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccc
Q 001400 535 -DDGGLYLGALYFSMVII-LFNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIPTSLIESGFWVAVTYYVIGY 612 (1085)
Q Consensus 535 -~~~~~~~g~lf~~l~~~-~~~~~~~~~~~~~~~~v~~k~r~~~~y~~~ay~l~~~~~~iP~~~i~~~i~~~i~Y~~~g~ 612 (1085)
.+...|.+.+.+..+.. ++..+..+..+...... .+..| -.+-..+..-|+.++.+.--
T Consensus 854 ~~~~~~~~~vY~~l~~~~~~~~~~rs~~~~~~~l~a---S~~Lh------~~ml~~Ilrapm~FFdtTP~---------- 914 (1381)
T KOG0054|consen 854 TVSTSFYLGVYALLGVASSLLTLLRSFLFAKGGLKA---SRKLH------DKLLNSILRAPMSFFDTTPT---------- 914 (1381)
T ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH------HHHHHHHHhCcchhcCCCCc----------
Confidence 12222322221111111 11111111111100000 00000 00111222223333222111
Q ss_pred cccHHHHHHHHHH-----HHHHHHHHHHHHHHHhHcccCHHHHHHHHHHHHHHHHHHhhccccCCCchhHHHHhHhhcHH
Q 001400 613 DPNVVRFSRQLLL-----YFFLHQMSIGLFRVIGSLGRNMIVANTFGSFAMLVVMALGGFIISRDSIPKWWIWGFWVSPL 687 (1085)
Q Consensus 613 ~~~~~~f~~~~l~-----~~~~~~~~~~l~~~i~~~~~~~~va~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~w~~~isp~ 687 (1085)
-+-..||....-. -+.+..+...+..+++.+.-...+ +....+..+++ .++||.--.
T Consensus 915 GRILNRFSkD~~~vD~~Lp~~~~~~~~~~~~~l~~~~vi~~~-~P~fli~~~pl-----------------~v~~~~~~~ 976 (1381)
T KOG0054|consen 915 GRILNRFSKDIDTVDVLLPFTLEFFLQSLLNVLGILVVISYV-TPWFLIAIIPL-----------------GVIYYFVQR 976 (1381)
T ss_pred cchhhhcccchHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHH-hHHHHHHHHHH-----------------HHHHHHHHH
Confidence 0112333333211 111111111111111111000000 00000000000 111111112
Q ss_pred HHHHHHHHHhhhcC---------------CcccccCCCCCcchHHHHHhhcCCCCCCcc------hHHHHHH-HHHHHHH
Q 001400 688 MYAQNAASVNEFLG---------------HSWDKKAGNSNFSLGEAILRQRSLFPESYW------YWIGVGA-MLGYTLL 745 (1085)
Q Consensus 688 ~y~~~a~~~nef~~---------------~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~------~w~~~g~-ll~~~~~ 745 (1085)
+|...+--+....+ .......-+.....-.......+.+...++ .|.++-. +++..++
T Consensus 977 ~Y~~tsReLkRLesitRSPi~sh~~Etl~GlsTIRAf~~~~rf~~~~~~~~D~~~~~~f~~~~a~RWla~Rle~ig~~~v 1056 (1381)
T KOG0054|consen 977 YYLATSRELKRLESITRSPIYSHFSETLQGLSTIRAFGKEERFIQENDELIDENSRAFFLSISANRWLAVRLELLGNLVV 1056 (1381)
T ss_pred HHHHHhHHHHHhhhcccchHHHhHHHHhcCcceeeeccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222111111111 111111111111111111111222222222 2443322 1111111
Q ss_pred HHHHHHHHHHhcCCCCCcccccc--hh-h----h----hhHhhhhcCcchhHHHHhhhh--------cccccCCcccccC
Q 001400 746 FNALFTFFLSYLNPLGKQQAVVS--KK-E----L----QERDRRRKGENVVIELREYLQ--------RSSSLNGKYFKQK 806 (1085)
Q Consensus 746 f~~l~~~~l~~~~~~~~~~~~~~--~~-~----~----~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~ 806 (1085)
+.+.+...+..-.....+....+ .. . . ......+..-.+..+..++.. .....+++.||.+
T Consensus 1057 ~~~al~~vl~~~~~~~~g~vGLslsyal~lt~~l~~~vR~~~elEn~m~SVERv~eY~~~~~E~p~~~~~~~pp~~WP~~ 1136 (1381)
T KOG0054|consen 1057 LIAALFAVLLPSGLISPGLVGLSLSYALQLTGLLQWLVRQSSELENNMVSVERVLEYTDIPSEAPLEIEESRPPPSWPSK 1136 (1381)
T ss_pred HHHHHHHHHccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHhcCCCCCCCCCcCCCCCCCCCCC
Confidence 11111111111110101110000 00 0 0 000000000001111111111 1111145567777
Q ss_pred CcccccccceeeeccceeeeeccccccccccccCCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeee
Q 001400 807 GMVLPFQPLSMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEG 886 (1085)
Q Consensus 807 ~~~~~~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G 886 (1085)
|.+ .|+++++. |.. +-..+|+||||+|+|||++||||++|||||||+++|.+... +.+|
T Consensus 1137 G~I-~f~~~~~R-----Yrp-------------~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e--~~~G 1195 (1381)
T KOG0054|consen 1137 GEI-EFEDLSLR-----YRP-------------NLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVE--PAEG 1195 (1381)
T ss_pred CeE-EEEEeEEE-----eCC-------------CCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcC--ccCC
Confidence 732 33333332 332 23469999999999999999999999999999999999876 4689
Q ss_pred EEEEcCccCCh---hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccc-----
Q 001400 887 DIYISGYPKRQ---ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSG----- 958 (1085)
Q Consensus 887 ~i~i~g~~~~~---~~~~~~~gy~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~----- 958 (1085)
+|.|||.++.+ .+.|++++.+||+|.+|.+ |+|.|| ++..+..++.+++++|.++|.+.-.
T Consensus 1196 ~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsG-TvR~NL----------DPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~ 1264 (1381)
T KOG0054|consen 1196 EILIDGVDISKIGLHDLRSRLSIIPQDPVLFSG-TVRFNL----------DPFDEYSDDEIWEALERCQLKDVVSSLPGG 1264 (1381)
T ss_pred eEEEcCeecccccHHHHHhcCeeeCCCCceecC-cccccc----------CcccccCHHHHHHHHHHhChHHHHhhCCcC
Confidence 99999999764 5678999999999999876 888887 3334455677899999998865432
Q ss_pred --cccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhc
Q 001400 959 --ALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESF 1036 (1085)
Q Consensus 959 --~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~ 1036 (1085)
..+. +++.++|.||||.+|+||||+++++||+|||+|+++|+++...|+++||+-. +++|||+|+|+++ ....+
T Consensus 1265 Ld~~v~-egG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F-~dcTVltIAHRl~--TVmd~ 1340 (1381)
T KOG0054|consen 1265 LDSEVS-EGGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEF-KDCTVLTIAHRLN--TVMDS 1340 (1381)
T ss_pred CCceec-CCCccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHh-cCCeEEEEeeccc--hhhhc
Confidence 2222 3457899999999999999999999999999999999999999999999954 6899999999976 55678
Q ss_pred CEEEEEecCcEEEEecCCCC
Q 001400 1037 DELLFMKRGGELIYAGPLGS 1056 (1085)
Q Consensus 1037 d~il~l~~gG~~~~~g~~~~ 1056 (1085)
|||+||++ |+++++|.+.+
T Consensus 1341 DrVlVld~-G~v~EfdsP~~ 1359 (1381)
T KOG0054|consen 1341 DRVLVLDA-GRVVEFDSPAE 1359 (1381)
T ss_pred CeEEEeeC-CeEeecCChHH
Confidence 99999986 68888887643
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-73 Score=745.03 Aligned_cols=559 Identities=24% Similarity=0.358 Sum_probs=460.8
Q ss_pred ceeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCCCceEEEEccCCCCCCCCCH
Q 001400 147 KLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTV 226 (1085)
Q Consensus 147 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV 226 (1085)
++.+|+|||+.++||++++|+|||||||||||++|+|+.++....+|+|.+||+++.. ..++.++||+|+|.+++.+||
T Consensus 775 ~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~-~~~~~i~yv~Q~~~~~~~~Tv 853 (1394)
T TIGR00956 775 KRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDS-SFQRSIGYVQQQDLHLPTSTV 853 (1394)
T ss_pred CcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCh-hhhcceeeecccccCCCCCCH
Confidence 3579999999999999999999999999999999999986433458999999998753 346789999999999999999
Q ss_pred HHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCccccc
Q 001400 227 RETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKG 306 (1085)
Q Consensus 227 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 306 (1085)
+|||.|+++++.+... . .. +...+++++++.+||.+++|+.||+.. .+
T Consensus 854 ~E~L~~~a~l~~~~~~-~------~~------------------------~~~~~v~~~l~~l~L~~~~d~~v~~~~-~~ 901 (1394)
T TIGR00956 854 RESLRFSAYLRQPKSV-S------KS------------------------EKMEYVEEVIKLLEMESYADAVVGVPG-EG 901 (1394)
T ss_pred HHHHHHHHHhCCCCCC-C------HH------------------------HHHHHHHHHHHHcCChhhCCCeeCCCC-CC
Confidence 9999998876532110 0 00 112358899999999999999998643 48
Q ss_pred CchhhhhHHHHHHHHhCCCc-EeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEecCC-
Q 001400 307 ISGGQKKRLTTGELLVGPAR-VLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEG- 384 (1085)
Q Consensus 307 LSGGqkqRvsia~al~~~p~-vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~~G- 384 (1085)
|||||||||+||++|+.+|+ ||||||||||||+.++..|++.|+++++ .+.|+|+++||+...+++.||++++|++|
T Consensus 902 LSgGqrqRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~-~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG 980 (1394)
T TIGR00956 902 LNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLAD-HGQAILCTIHQPSAILFEEFDRLLLLQKGG 980 (1394)
T ss_pred CCHHHhhHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEecCCCHHHHHhcCEEEEEcCCC
Confidence 99999999999999999997 9999999999999999999999999976 36788888988888888999999999987
Q ss_pred eEEEecCh----hhHHHHHHhCCC-CCCCCCChhHHHHhhcCcccccccccCCCCCCCCCChhHHHHHHHhCccccchhh
Q 001400 385 QIVYQGPR----VSVLDFFASMGF-SCPKRKNVADFLQEVTSKKDQEQYWSNPYLPYRYISPGKFAEAFHSYHTGKNLSE 459 (1085)
Q Consensus 385 ~iv~~G~~----~~~~~~f~~~G~-~~p~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (1085)
+++|+|+. +++.+||+++|+ +||++.|||||+.++.+...... ...++.+.|+.+...+...+
T Consensus 981 ~iv~~G~~~~~~~~~~~yf~~~G~~~~p~~~NpAd~~ldvi~~~~~~~------------~~~~~~~~~~~s~~~~~~~~ 1048 (1394)
T TIGR00956 981 QTVYFGDLGENSHTIINYFEKHGAPKCPEDANPAEWMLEVIGAAPGAH------------ANQDYHEVWRNSSEYQAVKN 1048 (1394)
T ss_pred EEEEECCcccccchHHHHHHhcCCCCCCCCCCHHHHHHHHhhcccccc------------hhccHHHHHhcCHHHHHHHH
Confidence 99999997 678999999996 99999999999999876432110 01245566665554443332
Q ss_pred hhcC---cccccCCCcccccCCCCCCcHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccc
Q 001400 460 ELAV---PFDRRFNHPAALSTSKYGEKRSELLKTSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHKTIDD 536 (1085)
Q Consensus 460 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~ali~g~vf~~~~~~~~~~~~ 536 (1085)
++.. +.............++|..+++.|+..+++|.++..+|++.+...|+++.+++|+++|++|++.+.+ ..+
T Consensus 1049 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~~~l~~R~~~~~~R~~~~~~~r~~~~i~~~l~~G~~f~~~~~~---~~~ 1125 (1394)
T TIGR00956 1049 ELDRLEAELSKAEDDNDPDALSKYAASLWYQFKLVLWRTFQQYWRTPDYLYSKFFLTIFAALFIGFTFFKVGTS---LQG 1125 (1394)
T ss_pred HHHHhhcccccCccccccccccccCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhCCCCC---HHH
Confidence 2211 1111100001112246889999999999999999999999999999999999999999999998753 234
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh-hhhhcCcccchHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccc
Q 001400 537 GGLYLGALYFSMVIILFNGFTEVSMLVAKLPVL-YKHRDLHFYPSWVYTIPSWALSIPTSLIESGFWVAVTYYVIGYDPN 615 (1085)
Q Consensus 537 ~~~~~g~lf~~l~~~~~~~~~~~~~~~~~~~v~-~k~r~~~~y~~~ay~l~~~~~~iP~~~i~~~i~~~i~Y~~~g~~~~ 615 (1085)
.+...|++|+.+++..+.....++.++.+++++ +|||..++|+.++|++++++.++|+.++.+++|.+++|||+|+.++
T Consensus 1126 i~~~~g~~f~~~~~~~~~~~~~~~~f~~~r~~~~~RE~~s~~Y~~~~y~~a~~l~elP~~~~~~~if~~i~Y~~~Gl~~~ 1205 (1394)
T TIGR00956 1126 LQNQMFAVFMATVLFNPLIQQYLPPFVAQRDLYEVRERPSRTFSWLAFIAAQITVEIPYNLVAGTIFFFIWYYPVGFYWN 1205 (1394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeecccccCc
Confidence 456688888877766555445566677777774 9999999999999999999999999999999999999999999887
Q ss_pred HHH-------HHHHHHHHHHHHHHHHHHHHHHhHcccCHHHHHHHHHHHHHHHHHHhhccccCCCchhHHHHhHhhcHHH
Q 001400 616 VVR-------FSRQLLLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSFAMLVVMALGGFIISRDSIPKWWIWGFWVSPLM 688 (1085)
Q Consensus 616 ~~~-------f~~~~l~~~~~~~~~~~l~~~i~~~~~~~~va~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~w~~~isp~~ 688 (1085)
+.. |+.+++++++...++.+++.++++++++..+|..+++++..++++|+||++++++||.||+|++|+||+.
T Consensus 1206 ~~~~~~~~~~f~~~~~~~~~~~~~~~s~g~~~~~~~~~~~~a~~~~~~~~~~~~lf~G~~~~~~~ip~~~~w~~~~sp~~ 1285 (1394)
T TIGR00956 1206 ASKTGQVHERGVLFWLLSTMFFLYFSTLGQMVISFNPNADNAAVLASLLFTMCLSFCGVLAPPSRMPGFWIFMYRCSPFT 1285 (1394)
T ss_pred ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHhccccCChhHCcHHHhHHHhcCHHH
Confidence 755 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhcCCcccccCC-------------------------------C-------CCcchHHHHHhhcCCCCCCc
Q 001400 689 YAQNAASVNEFLGHSWDKKAG-------------------------------N-------SNFSLGEAILRQRSLFPESY 730 (1085)
Q Consensus 689 y~~~a~~~nef~~~~~~~~~~-------------------------------~-------~~~~~g~~~l~~~~~~~~~~ 730 (1085)
|++++++.|+|.+....|... + +....|+++|+.+++....
T Consensus 1286 y~~~~l~~~~~~~~~~~C~~~e~~~f~pp~~~tC~~y~~~~~~~~~G~l~~~~a~~~C~yC~~~~~~~~l~~~~~~~~~- 1364 (1394)
T TIGR00956 1286 YLVQALLSTGLADVPVTCKVKELLTFNPPSGQTCGEYMKPYLENAGGYLLNPNATDSCSFCQYSYTNDFLEPISSKYSG- 1364 (1394)
T ss_pred HHHHHHHHHHcCCCeeecCccccceecCCCCCCHHHHHHHHHhhCCcEeeCCCCCCCCCcCCCCCHHHHHHHcCCcccc-
Confidence 999999999998876544221 0 1145788999988876554
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhc
Q 001400 731 WYWIGVGAMLGYTLLFNALFTFFLSYL 757 (1085)
Q Consensus 731 ~~w~~~g~ll~~~~~f~~l~~~~l~~~ 757 (1085)
.|.+++++++|++++ ++.++++.|.
T Consensus 1365 -~w~~~~i~~~~~~~~-~~~~~~l~~~ 1389 (1394)
T TIGR00956 1365 -RWRNFGIFIAFIFFN-IIATVFFYWL 1389 (1394)
T ss_pred -cccchhhhhHHHHHH-HHHHHhhheE
Confidence 589999999999888 6666666664
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-71 Score=719.83 Aligned_cols=201 Identities=28% Similarity=0.430 Sum_probs=176.4
Q ss_pred eEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCCh--hcccceEEEEccCCCCCCCCCH
Q 001400 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ--ETFARISGYCEQNDIHSPGLTV 919 (1085)
Q Consensus 842 ~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~--~~~~~~~gy~~Q~~~~~~~~tv 919 (1085)
+.+|+||||.|++||++||+|+||||||||+++|+|... +.+|+|.++|+++.. ...++.+|||+|++.+++.+|+
T Consensus 1952 ~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~--ptsG~I~i~G~~i~~~~~~~r~~IGy~pQ~~~L~~~LTv 2029 (2272)
T TIGR01257 1952 SPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTT--VTSGDATVAGKSILTNISDVHQNMGYCPQFDAIDDLLTG 2029 (2272)
T ss_pred ceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCC--CCccEEEECCEECcchHHHHhhhEEEEeccccCCCCCCH
Confidence 579999999999999999999999999999999999876 568999999988642 2345679999999999999999
Q ss_pred HHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCC
Q 001400 920 LESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGL 999 (1085)
Q Consensus 920 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEPtsgL 999 (1085)
+|++.+.+.++. ...++.++.++++++.++|.+..+..+ +.|||||||||+||+||+.+|+||||||||+||
T Consensus 2030 ~E~L~l~a~l~g---~~~~~~~~~v~~lLe~lgL~~~~dk~~-----~~LSGGqKqRLslA~ALi~~P~VLLLDEPTsGL 2101 (2272)
T TIGR01257 2030 REHLYLYARLRG---VPAEEIEKVANWSIQSLGLSLYADRLA-----GTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGM 2101 (2272)
T ss_pred HHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCHHHhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCC
Confidence 999998766543 223334556788999999988877664 479999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCC
Q 001400 1000 DARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1085)
Q Consensus 1000 D~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~ 1054 (1085)
|+.+++.+++.|++++++|+|||+|||+++ ++...|||+++|++ |+++..|+.
T Consensus 2102 Dp~sr~~l~~lL~~l~~~g~TIILtTH~me-e~e~lcDrV~IL~~-G~i~~~Gs~ 2154 (2272)
T TIGR01257 2102 DPQARRMLWNTIVSIIREGRAVVLTSHSME-ECEALCTRLAIMVK-GAFQCLGTI 2154 (2272)
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence 999999999999999878999999999986 57788999999985 789988875
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-68 Score=705.02 Aligned_cols=211 Identities=22% Similarity=0.301 Sum_probs=174.0
Q ss_pred eeeeccceeeeeccccccccccccCCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccC
Q 001400 816 SMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPK 895 (1085)
Q Consensus 816 ~~~~~~~~y~v~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 895 (1085)
.+.|+|+++.++. +..++|+||||+|+|||++||+|+||||||||+++|.|... +.+|+|.|||.++
T Consensus 1237 ~I~f~nVsf~Y~~-----------~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~--p~~G~I~IDG~dI 1303 (1622)
T PLN03130 1237 SIKFEDVVLRYRP-----------ELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVE--LERGRILIDGCDI 1303 (1622)
T ss_pred cEEEEEEEEEeCC-----------CCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCC--CCCceEEECCEec
Confidence 4677777766521 12469999999999999999999999999999999999876 5689999999987
Q ss_pred Ch---hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCccc-------ccccCCCC
Q 001400 896 RQ---ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLS-------GALIGLPG 965 (1085)
Q Consensus 896 ~~---~~~~~~~gy~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~ 965 (1085)
+. ..+|+.++||||++.++.+ |++|||.++. + ..++.++++++..++.+.. |..++. +
T Consensus 1304 ~~i~l~~LR~~IsiVpQdp~LF~G-TIreNLd~~~------~----~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge-~ 1371 (1622)
T PLN03130 1304 SKFGLMDLRKVLGIIPQAPVLFSG-TVRFNLDPFN------E----HNDADLWESLERAHLKDVIRRNSLGLDAEVSE-A 1371 (1622)
T ss_pred ccCCHHHHHhccEEECCCCccccc-cHHHHhCcCC------C----CCHHHHHHHHHHcCcHHHHHhCccccCccccC-C
Confidence 54 5678899999999999976 9999996531 1 1234577888887775432 333333 2
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEecC
Q 001400 966 INGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 1045 (1085)
Q Consensus 966 ~~~LS~Gqrqrl~iA~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~g 1045 (1085)
+.+||||||||+||||||+++|+||+||||||+||+++.+.|++.|++.. +++|||+|+|+++ ....||+|++|++
T Consensus 1372 G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~-~~~TvI~IAHRL~--tI~~~DrIlVLd~- 1447 (1622)
T PLN03130 1372 GENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLN--TIIDCDRILVLDA- 1447 (1622)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEeCChH--HHHhCCEEEEEEC-
Confidence 35799999999999999999999999999999999999999999999974 5899999999975 5677999999985
Q ss_pred cEEEEecCCC
Q 001400 1046 GELIYAGPLG 1055 (1085)
Q Consensus 1046 G~~~~~g~~~ 1055 (1085)
|++++.|+..
T Consensus 1448 G~IvE~Gt~~ 1457 (1622)
T PLN03130 1448 GRVVEFDTPE 1457 (1622)
T ss_pred CEEEEeCCHH
Confidence 7999988753
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-68 Score=613.08 Aligned_cols=475 Identities=26% Similarity=0.335 Sum_probs=358.3
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCC-CceeeEEEECCccCCCCC-------CCceEEEEccCCC
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHH-LQVSGKITYNGHGFKEFV-------PPRTSAYVSQQDW 219 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~-~~~~G~i~~~G~~~~~~~-------~~~~~~yv~Q~d~ 219 (1085)
..+++||||++.|||+++|+|.|||||||+.++|.|.+++. ...+|+|.++|.++.... ..+.++|++|++.
T Consensus 22 ~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~Q~p~ 101 (539)
T COG1123 22 VPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPM 101 (539)
T ss_pred eeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHHHHHhccccEEEEecCch
Confidence 57999999999999999999999999999999999999876 456899999998764432 2368999999974
Q ss_pred --CCCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccc
Q 001400 220 --QVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADT 297 (1085)
Q Consensus 220 --~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 297 (1085)
+-|-+||.+.|.-..+.++...+ .+...++.++|+.+||++....
T Consensus 102 ~slnP~~tIg~Qi~E~~~~h~~~~~---------------------------------~ea~~~a~elL~~Vgl~~~~~~ 148 (539)
T COG1123 102 TSLNPVMTIGDQIREALRLHGKGSR---------------------------------AEARKRAVELLEQVGLPDPERR 148 (539)
T ss_pred hhcCchhhHHHHHHHHHHHhccccH---------------------------------HHHHHHHHHHHHHcCCCChhhh
Confidence 56778999888765554432210 1123457889999999987654
Q ss_pred cccCcccccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCe
Q 001400 298 LVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDD 377 (1085)
Q Consensus 298 ~vg~~~~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ 377 (1085)
+++.+.|||||||||.||+||+.+|++|++||||++||+.++.+|.+.|+++.++. ++.++.++|+..-+.+++|+
T Consensus 149 ---~~yPheLSGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~-g~a~l~ITHDl~Vva~~aDr 224 (539)
T COG1123 149 ---DRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQREL-GMAVLFITHDLGVVAELADR 224 (539)
T ss_pred ---ccCCcccCchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHc-CcEEEEEcCCHHHHHHhcCe
Confidence 56788999999999999999999999999999999999999999999999998764 67777799999999999999
Q ss_pred EEEecCCeEEEecChhhHHHHHHhCCCCCCCCCChhHHHHhhcCcccccccccCCCCCCCCCChhHHHHHHHhCccccch
Q 001400 378 VILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVTSKKDQEQYWSNPYLPYRYISPGKFAEAFHSYHTGKNL 457 (1085)
Q Consensus 378 ii~L~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (1085)
|+||++|++|+.|+.+++..- +..||+. . +
T Consensus 225 v~Vm~~G~iVE~G~~~~i~~~---------------------------------p~hpYT~---~--------------L 254 (539)
T COG1123 225 VVVMYKGEIVETGPTEEILSN---------------------------------PQHPYTR---G--------------L 254 (539)
T ss_pred EEEEECCEEEEecCHHHHHhc---------------------------------cCCcccH---H--------------H
Confidence 999999999999999888531 1112210 0 0
Q ss_pred hhhhcCcccccCCCcccccCCCCCCcHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccccc
Q 001400 458 SEELAVPFDRRFNHPAALSTSKYGEKRSELLKTSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHKTIDDG 537 (1085)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~ali~g~vf~~~~~~~~~~~~~ 537 (1085)
.+
T Consensus 255 l~------------------------------------------------------------------------------ 256 (539)
T COG1123 255 LA------------------------------------------------------------------------------ 256 (539)
T ss_pred Hh------------------------------------------------------------------------------
Confidence 00
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCcccchHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccHH
Q 001400 538 GLYLGALYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIPTSLIESGFWVAVTYYVIGYDPNVV 617 (1085)
Q Consensus 538 ~~~~g~lf~~l~~~~~~~~~~~~~~~~~~~v~~k~r~~~~y~~~ay~l~~~~~~iP~~~i~~~i~~~i~Y~~~g~~~~~~ 617 (1085)
..|.....+.
T Consensus 257 ---------------------------a~p~~~~~~~------------------------------------------- 266 (539)
T COG1123 257 ---------------------------AVPRLGDEKI------------------------------------------- 266 (539)
T ss_pred ---------------------------hCCCcccccc-------------------------------------------
Confidence 0000000000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHcccCHHHHHHHHHHHHHHHHHHhhccccCCCchhHHHHhHhhcHHHHHHHHHHHh
Q 001400 618 RFSRQLLLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSFAMLVVMALGGFIISRDSIPKWWIWGFWVSPLMYAQNAASVN 697 (1085)
Q Consensus 618 ~f~~~~l~~~~~~~~~~~l~~~i~~~~~~~~va~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~w~~~isp~~y~~~a~~~n 697 (1085)
T Consensus 267 -------------------------------------------------------------------------------- 266 (539)
T COG1123 267 -------------------------------------------------------------------------------- 266 (539)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhcCCcccccCCCCCcchHHHHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccchhhhhhHhh
Q 001400 698 EFLGHSWDKKAGNSNFSLGEAILRQRSLFPESYWYWIGVGAMLGYTLLFNALFTFFLSYLNPLGKQQAVVSKKELQERDR 777 (1085)
Q Consensus 698 ef~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~w~~~g~ll~~~~~f~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 777 (1085)
.+...
T Consensus 267 -----~~~~~---------------------------------------------------------------------- 271 (539)
T COG1123 267 -----IRLPR---------------------------------------------------------------------- 271 (539)
T ss_pred -----ccccc----------------------------------------------------------------------
Confidence 00000
Q ss_pred hhcCcchhHHHHhhhhcccccCCcccccCCcccccccceeeeccceeeeeccccccccccccCCeEEeeeeeEEEeCCeE
Q 001400 778 RRKGENVVIELREYLQRSSSLNGKYFKQKGMVLPFQPLSMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVL 857 (1085)
Q Consensus 778 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~ 857 (1085)
.... .....+..++++..| .....+. ....+...+++||||++++||+
T Consensus 272 -------------------~~~~----~~~~ll~V~~l~k~y-------~~~~~~~--~~~~~~~~Av~~VSf~l~~GE~ 319 (539)
T COG1123 272 -------------------RGPL----RAEPLLSVRNLSKRY-------GSRKGLF--VRERGEVKAVDDVSFDLREGET 319 (539)
T ss_pred -------------------cccc----ccCceeEeeeeeeee-------ccccccc--cccccceeeeeeeeeEecCCCE
Confidence 0000 000011111122211 1110000 0002346799999999999999
Q ss_pred EEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccC--C---hhcccceEEEEccCCC--CCCCCCHHHHHHHhhhhc
Q 001400 858 TALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPK--R---QETFARISGYCEQNDI--HSPGLTVLESLLFSAWLR 930 (1085)
Q Consensus 858 ~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~--~---~~~~~~~~gy~~Q~~~--~~~~~tv~e~l~~~~~~~ 930 (1085)
+||+|+||||||||.++|+|+.+ +.+|.|.++|.+. + ....++.+-+++|+|. +.|.+||.+.+.-.....
T Consensus 320 lglVGeSGsGKSTlar~i~gL~~--P~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~ 397 (539)
T COG1123 320 LGLVGESGSGKSTLARILAGLLP--PSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIH 397 (539)
T ss_pred EEEECCCCCCHHHHHHHHhCCCC--CCCceEEEeCcccccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhh
Confidence 99999999999999999999887 4689999999762 1 1234567788888864 579999999987654333
Q ss_pred CCCcccHHHHHHHHHHHHHHcCCCc-ccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH
Q 001400 931 LPSEIELETQRAFVEEVMELVELTS-LSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMR 1009 (1085)
Q Consensus 931 ~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEPtsgLD~~~~~~i~~ 1009 (1085)
.. ....+.++.+.++++.++|.. +.+.+ +.+||||||||++|||||+.+|++|++|||||.||+..++.|.+
T Consensus 398 ~~--~~~~~~~~rv~~ll~~VgL~~~~l~ry-----P~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~Vln 470 (539)
T COG1123 398 GG--GSGAERRARVAELLELVGLPPEFLDRY-----PHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLN 470 (539)
T ss_pred cc--cchHHHHHHHHHHHHHcCCCHHHHhcC-----chhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHH
Confidence 22 224556677999999999985 33333 35899999999999999999999999999999999999999999
Q ss_pred HHHHHHHC-CceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCC
Q 001400 1010 TVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1085)
Q Consensus 1010 ~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~ 1055 (1085)
+|+++.++ |.|.|+||||+.. +...|||+++|++ |+++..||..
T Consensus 471 Ll~~lq~e~g~t~lfISHDl~v-V~~i~drv~vm~~-G~iVE~G~~~ 515 (539)
T COG1123 471 LLKDLQEELGLTYLFISHDLAV-VRYIADRVAVMYD-GRIVEEGPTE 515 (539)
T ss_pred HHHHHHHHhCCEEEEEeCCHHH-HHhhCceEEEEEC-CeEEEeCCHH
Confidence 99999765 9999999999874 7788999999985 7999999754
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-67 Score=699.76 Aligned_cols=211 Identities=21% Similarity=0.297 Sum_probs=174.0
Q ss_pred eeeeccceeeeeccccccccccccCCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccC
Q 001400 816 SMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPK 895 (1085)
Q Consensus 816 ~~~~~~~~y~v~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 895 (1085)
.+.|+|+++.++. +...+|+||||+|+|||++||+|+||||||||+++|.|..+ +.+|+|.|||.++
T Consensus 1234 ~I~f~nVsf~Y~~-----------~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~--p~~G~I~IdG~di 1300 (1495)
T PLN03232 1234 SIKFEDVHLRYRP-----------GLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVE--LEKGRIMIDDCDV 1300 (1495)
T ss_pred cEEEEEEEEEECC-----------CCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc--CCCceEEECCEEh
Confidence 4677777766521 22469999999999999999999999999999999999876 5689999999987
Q ss_pred Ch---hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCccc-------ccccCCCC
Q 001400 896 RQ---ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLS-------GALIGLPG 965 (1085)
Q Consensus 896 ~~---~~~~~~~gy~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~ 965 (1085)
++ ..++++++||||++.++++ |++|||.++. +. .++.++++++..++.+.. |..++. +
T Consensus 1301 ~~i~~~~lR~~i~iVpQdp~LF~g-TIr~NL~~~~------~~----sdeei~~al~~a~l~~~I~~lp~GLdt~v~e-~ 1368 (1495)
T PLN03232 1301 AKFGLTDLRRVLSIIPQSPVLFSG-TVRFNIDPFS------EH----NDADLWEALERAHIKDVIDRNPFGLDAEVSE-G 1368 (1495)
T ss_pred hhCCHHHHHhhcEEECCCCeeeCc-cHHHHcCCCC------CC----CHHHHHHHHHHcCCHHHHHhCcCCCCceecC-C
Confidence 53 5678899999999999976 9999996431 11 234577888888775432 233333 2
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEecC
Q 001400 966 INGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 1045 (1085)
Q Consensus 966 ~~~LS~Gqrqrl~iA~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~g 1045 (1085)
+.+||||||||++|||||+++|+||+||||||+||+++.+.|++.|++.. +++|||+|+|+++ ....||+|++|++
T Consensus 1369 G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~-~~~TvI~IAHRl~--ti~~~DrIlVL~~- 1444 (1495)
T PLN03232 1369 GENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEF-KSCTMLVIAHRLN--TIIDCDKILVLSS- 1444 (1495)
T ss_pred CCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHH--HHHhCCEEEEEEC-
Confidence 35799999999999999999999999999999999999999999999864 5899999999975 5667999999985
Q ss_pred cEEEEecCCC
Q 001400 1046 GELIYAGPLG 1055 (1085)
Q Consensus 1046 G~~~~~g~~~ 1055 (1085)
|++++.|+..
T Consensus 1445 G~ivE~Gt~~ 1454 (1495)
T PLN03232 1445 GQVLEYDSPQ 1454 (1495)
T ss_pred CEEEEECCHH
Confidence 7999988753
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-65 Score=666.72 Aligned_cols=216 Identities=20% Similarity=0.325 Sum_probs=174.4
Q ss_pred eeeeccceeeeeccccccccccccCCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCC-------------
Q 001400 816 SMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGG------------- 882 (1085)
Q Consensus 816 ~~~~~~~~y~v~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~------------- 882 (1085)
.+.|+|++|.++.. ++.++|+|+||+|+||+++||+|+||||||||+++|.|...+.
T Consensus 1165 ~I~f~nVsF~Y~~~----------~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~ 1234 (1466)
T PTZ00265 1165 KIEIMDVNFRYISR----------PNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTN 1234 (1466)
T ss_pred eEEEEEEEEECCCC----------CCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCcccccccccccccc
Confidence 47788888776321 2346999999999999999999999999999999999976531
Q ss_pred ---------------------------------------eeeeEEEEcCccCCh---hcccceEEEEccCCCCCCCCCHH
Q 001400 883 ---------------------------------------IIEGDIYISGYPKRQ---ETFARISGYCEQNDIHSPGLTVL 920 (1085)
Q Consensus 883 ---------------------------------------~~~G~i~i~g~~~~~---~~~~~~~gy~~Q~~~~~~~~tv~ 920 (1085)
+.+|+|.+||.++++ ..+++.+|||+|++.+|. .|++
T Consensus 1235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~-gTIr 1313 (1466)
T PTZ00265 1235 DMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFN-MSIY 1313 (1466)
T ss_pred ccccccccccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCcccc-ccHH
Confidence 148999999998753 567889999999999985 6999
Q ss_pred HHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcc-------cccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q 001400 921 ESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSL-------SGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMD 993 (1085)
Q Consensus 921 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlD 993 (1085)
||+.|+. + +.. ++.++++++..++.+. .|..+|.. +..||||||||++|||||+++|+|||||
T Consensus 1314 eNI~~g~----~-~at----~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~-G~~LSGGQkQRIaIARALlr~p~ILLLD 1383 (1466)
T PTZ00265 1314 ENIKFGK----E-DAT----REDVKRACKFAAIDEFIESLPNKYDTNVGPY-GKSLSGGQKQRIAIARALLREPKILLLD 1383 (1466)
T ss_pred HHHhcCC----C-CCC----HHHHHHHHHHcCCHHHHHhCccccCCccCCC-CCcCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 9999862 1 111 2346677777666443 34455533 3579999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHH-HCCceEEEEecCccHHHHHhcCEEEEEecC---cE-EEEecCC
Q 001400 994 EPTSGLDARAAAIVMRTVRNIV-NTGRTIVCTIHQPSIDIFESFDELLFMKRG---GE-LIYAGPL 1054 (1085)
Q Consensus 994 EPtsgLD~~~~~~i~~~l~~~~-~~g~tvi~~~H~~~~~~~~~~d~il~l~~g---G~-~~~~g~~ 1054 (1085)
||||+||+++.+.|++.|+++. .+++|+|+|+|+++ ..+.||+|++|++| |+ ++..|+-
T Consensus 1384 EaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRls--ti~~aD~Ivvl~~~~~~G~iv~e~Gth 1447 (1466)
T PTZ00265 1384 EATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIA--SIKRSDKIVVFNNPDRTGSFVQAHGTH 1447 (1466)
T ss_pred CcccccCHHHHHHHHHHHHHHhccCCCEEEEEechHH--HHHhCCEEEEEeCCCCCCCEEEEecCH
Confidence 9999999999999999999985 36899999999975 56789999999973 66 5577763
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-66 Score=686.53 Aligned_cols=211 Identities=21% Similarity=0.253 Sum_probs=174.0
Q ss_pred eeeeccceeeeeccccccccccccCCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccC
Q 001400 816 SMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPK 895 (1085)
Q Consensus 816 ~~~~~~~~y~v~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 895 (1085)
.+.|+|+++.++. +...+|+||||+|+|||++||+|+||||||||+++|.|... +.+|+|.|||.++
T Consensus 1284 ~I~f~nVsf~Y~~-----------~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~--~~~G~I~IdG~dI 1350 (1522)
T TIGR00957 1284 RVEFRNYCLRYRE-----------DLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINE--SAEGEIIIDGLNI 1350 (1522)
T ss_pred cEEEEEEEEEeCC-----------CCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcc--CCCCeEEECCEEc
Confidence 4677777776631 12369999999999999999999999999999999999876 5689999999987
Q ss_pred Ch---hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCccc-------ccccCCCC
Q 001400 896 RQ---ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLS-------GALIGLPG 965 (1085)
Q Consensus 896 ~~---~~~~~~~gy~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~ 965 (1085)
+. ..+|+.++||||++.++.+ |++|||.... + ..++.++++++.+++.+.- |..++. +
T Consensus 1351 ~~i~~~~LR~~i~iVpQdp~LF~g-TIr~NLdp~~------~----~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e-~ 1418 (1522)
T TIGR00957 1351 AKIGLHDLRFKITIIPQDPVLFSG-SLRMNLDPFS------Q----YSDEEVWWALELAHLKTFVSALPDKLDHECAE-G 1418 (1522)
T ss_pred cccCHHHHHhcCeEECCCCcccCc-cHHHHcCccc------C----CCHHHHHHHHHHcCcHHHHhhCccCCCceecC-C
Confidence 54 5678899999999999976 9999995211 1 1234477888888875432 333433 2
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEecC
Q 001400 966 INGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 1045 (1085)
Q Consensus 966 ~~~LS~Gqrqrl~iA~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~g 1045 (1085)
+.+||||||||+||||||+++|+||+||||||+||+++.+.|++.|++.. +++|||+|+|+++ ....+|+|++|++
T Consensus 1419 G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~-~~~TvI~IAHRl~--ti~~~DrIlVld~- 1494 (1522)
T TIGR00957 1419 GENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQF-EDCTVLTIAHRLN--TIMDYTRVIVLDK- 1494 (1522)
T ss_pred CCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH--HHHhCCEEEEEEC-
Confidence 35799999999999999999999999999999999999999999999864 5899999999975 5678999999985
Q ss_pred cEEEEecCCC
Q 001400 1046 GELIYAGPLG 1055 (1085)
Q Consensus 1046 G~~~~~g~~~ 1055 (1085)
|++++.|+..
T Consensus 1495 G~IvE~G~~~ 1504 (1522)
T TIGR00957 1495 GEVAEFGAPS 1504 (1522)
T ss_pred CEEEEECCHH
Confidence 7999998753
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-66 Score=623.96 Aligned_cols=469 Identities=21% Similarity=0.318 Sum_probs=347.1
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCC----CceEEEEccCCCCCCC
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP----PRTSAYVSQQDWQVAE 223 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 223 (1085)
+.+|+|+|+.|++|++++|+|||||||||||++|+|.+++. +.+|+|.++|.++..... ++.++||+|++.+++.
T Consensus 18 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~-~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 96 (506)
T PRK13549 18 VKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHG-TYEGEIIFEGEELQASNIRDTERAGIAIIHQELALVKE 96 (506)
T ss_pred eEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCC-CCCeEEEECCEECCCCCHHHHHHCCeEEEEeccccCCC
Confidence 36999999999999999999999999999999999998751 249999999998754321 3569999999988999
Q ss_pred CCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCcc
Q 001400 224 MTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEM 303 (1085)
Q Consensus 224 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 303 (1085)
+||+||+.|+......+. .+ . .....+++++++.+||++..+..+
T Consensus 97 ~tv~e~l~~~~~~~~~~~-~~------~------------------------~~~~~~~~~~l~~~~l~~~~~~~~---- 141 (506)
T PRK13549 97 LSVLENIFLGNEITPGGI-MD------Y------------------------DAMYLRAQKLLAQLKLDINPATPV---- 141 (506)
T ss_pred CcHHHHhhhcccccccCC-cC------H------------------------HHHHHHHHHHHHHcCCCCCcccch----
Confidence 999999988643210000 00 0 001224778899999987777655
Q ss_pred cccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEecC
Q 001400 304 LKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSE 383 (1085)
Q Consensus 304 ~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~~ 383 (1085)
..|||||||||+||+||+.+|++|||||||+|||+.++..+.+.|+++++. +++|+.++|+..++.+++|+|++|++
T Consensus 142 -~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~--~~tvi~~tH~~~~~~~~~d~v~~l~~ 218 (506)
T PRK13549 142 -GNLGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAH--GIACIYISHKLNEVKAISDTICVIRD 218 (506)
T ss_pred -hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC--CCEEEEEeCcHHHHHHhcCEEEEEEC
Confidence 469999999999999999999999999999999999999999999998653 45566688999999999999999999
Q ss_pred CeEEEecChhhHHHHHHhCCCCCCCCCChhHHHHhhcCcccccccccCCCCCCCCCChhHHHHHHHhCccccchhhhhcC
Q 001400 384 GQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVTSKKDQEQYWSNPYLPYRYISPGKFAEAFHSYHTGKNLSEELAV 463 (1085)
Q Consensus 384 G~iv~~G~~~~~~~~f~~~G~~~p~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (1085)
|++++.|+.+++.. .+.. +.+
T Consensus 219 G~i~~~~~~~~~~~---------------~~~~-----------------------------~~~--------------- 239 (506)
T PRK13549 219 GRHIGTRPAAGMTE---------------DDII-----------------------------TMM--------------- 239 (506)
T ss_pred CEEeeecccccCCH---------------HHHH-----------------------------HHh---------------
Confidence 99998886432200 0000 000
Q ss_pred cccccCCCcccccCCCCCCcHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccccchhHHHH
Q 001400 464 PFDRRFNHPAALSTSKYGEKRSELLKTSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHKTIDDGGLYLGA 543 (1085)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~ali~g~vf~~~~~~~~~~~~~~~~~g~ 543 (1085)
.... .
T Consensus 240 -------------------------------------------------------------~~~~-----~--------- 244 (506)
T PRK13549 240 -------------------------------------------------------------VGRE-----L--------- 244 (506)
T ss_pred -------------------------------------------------------------hCcC-----c---------
Confidence 0000 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCcccchHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccHHHHHHHH
Q 001400 544 LYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIPTSLIESGFWVAVTYYVIGYDPNVVRFSRQL 623 (1085)
Q Consensus 544 lf~~l~~~~~~~~~~~~~~~~~~~v~~k~r~~~~y~~~ay~l~~~~~~iP~~~i~~~i~~~i~Y~~~g~~~~~~~f~~~~ 623 (1085)
T Consensus 245 -------------------------------------------------------------------------------- 244 (506)
T PRK13549 245 -------------------------------------------------------------------------------- 244 (506)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHhHcccCHHHHHHHHHHHHHHHHHHhhccccCCCchhHHHHhHhhcHHHHHHHHHHHhhhcCCc
Q 001400 624 LLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSFAMLVVMALGGFIISRDSIPKWWIWGFWVSPLMYAQNAASVNEFLGHS 703 (1085)
Q Consensus 624 l~~~~~~~~~~~l~~~i~~~~~~~~va~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~w~~~isp~~y~~~a~~~nef~~~~ 703 (1085)
+
T Consensus 245 ---------------------------------------------------~---------------------------- 245 (506)
T PRK13549 245 ---------------------------------------------------T---------------------------- 245 (506)
T ss_pred ---------------------------------------------------c----------------------------
Confidence 0
Q ss_pred ccccCCCCCcchHHHHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccchhhhhhHhhhhcCcc
Q 001400 704 WDKKAGNSNFSLGEAILRQRSLFPESYWYWIGVGAMLGYTLLFNALFTFFLSYLNPLGKQQAVVSKKELQERDRRRKGEN 783 (1085)
Q Consensus 704 ~~~~~~~~~~~~g~~~l~~~~~~~~~~~~w~~~g~ll~~~~~f~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 783 (1085)
. ..
T Consensus 246 ------~--------------~~--------------------------------------------------------- 248 (506)
T PRK13549 246 ------A--------------LY--------------------------------------------------------- 248 (506)
T ss_pred ------c--------------cc---------------------------------------------------------
Confidence 0 00
Q ss_pred hhHHHHhhhhcccccCCcccccCCcccccccceeeeccceeeeeccccccccccccCCeEEeeeeeEEEeCCeEEEEEcc
Q 001400 784 VVIELREYLQRSSSLNGKYFKQKGMVLPFQPLSMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGV 863 (1085)
Q Consensus 784 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~ 863 (1085)
+.. . .. . . ...+.++++++.++. .++..+|+||||+|++||++||+|+
T Consensus 249 --------~~~--~-~~---~-~-------~~~l~~~~l~~~~~~----------~~~~~vl~~vsl~i~~Ge~~~l~G~ 296 (506)
T PRK13549 249 --------PRE--P-HT---I-G-------EVILEVRNLTAWDPV----------NPHIKRVDDVSFSLRRGEILGIAGL 296 (506)
T ss_pred --------ccc--c-cC---C-C-------CceEEEecCcccccc----------ccccccccceeeEEcCCcEEEEeCC
Confidence 000 0 00 0 0 001222333221100 0234589999999999999999999
Q ss_pred CCCChhHHHhhhhCCCCCCeeeeEEEEcCccCCh----hcccceEEEEccCC---CCCCCCCHHHHHHHhhhhcCCC--c
Q 001400 864 SGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ----ETFARISGYCEQND---IHSPGLTVLESLLFSAWLRLPS--E 934 (1085)
Q Consensus 864 nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~----~~~~~~~gy~~Q~~---~~~~~~tv~e~l~~~~~~~~~~--~ 934 (1085)
||||||||+++|+|...+ +.+|+|.++|.++.. ...++.+||++|++ .+++.+|+.||+.+........ .
T Consensus 297 NGsGKSTLlk~i~Gl~~~-~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~ 375 (506)
T PRK13549 297 VGAGRTELVQCLFGAYPG-RWEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSR 375 (506)
T ss_pred CCCCHHHHHHHHhCCCCC-CCCcEEEECCEECCCCCHHHHHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcc
Confidence 999999999999997641 258999999987532 12345689999985 4678899999998753211100 0
Q ss_pred ccHHHHHHHHHHHHHHcCCC-cccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 001400 935 IELETQRAFVEEVMELVELT-SLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRN 1013 (1085)
Q Consensus 935 ~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~ 1013 (1085)
.......+.++++++.+++. +..+..+ ..|||||||||+|||||+.+|+||||||||+|||+.+++.+++.|++
T Consensus 376 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 450 (506)
T PRK13549 376 IDDAAELKTILESIQRLKVKTASPELAI-----ARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQ 450 (506)
T ss_pred cChHHHHHHHHHHHHhcCccCCCccccc-----ccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHH
Confidence 12223345678899999985 3555443 57999999999999999999999999999999999999999999999
Q ss_pred HHHCCceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCCCch-HHHHHHH
Q 001400 1014 IVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGSKS-CELIKYF 1065 (1085)
Q Consensus 1014 ~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~~~~-~~~~~~~ 1065 (1085)
++++|+|||++|||++ ++.+.||++++|++ |+++..|+..+.. .++.+.+
T Consensus 451 l~~~g~tvi~~sHd~~-~~~~~~d~v~~l~~-G~i~~~~~~~~~~~~~~~~~~ 501 (506)
T PRK13549 451 LVQQGVAIIVISSELP-EVLGLSDRVLVMHE-GKLKGDLINHNLTQEQVMEAA 501 (506)
T ss_pred HHHCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEeccccCCHHHHHHHH
Confidence 9888999999999986 47788999999985 7888888776542 3344443
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-65 Score=628.38 Aligned_cols=488 Identities=20% Similarity=0.249 Sum_probs=346.4
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCC----------CCC-------CCce
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFK----------EFV-------PPRT 210 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~----------~~~-------~~~~ 210 (1085)
.++|+|||+.+++|++++|+||||||||||+++|+|.++|. +|+|.++|..+. ... ..+.
T Consensus 29 ~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 105 (623)
T PRK10261 29 IAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQA---GGLVQCDKMLLRRRSRQVIELSEQSAAQMRHVRGAD 105 (623)
T ss_pred eeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCC---CeEEEECCEEeccccccccccccCCHHHHHHHhCCC
Confidence 46999999999999999999999999999999999999876 899999986431 100 1246
Q ss_pred EEEEccCC--CCCCCCCHHHHHHHhhhhc-CCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHH
Q 001400 211 SAYVSQQD--WQVAEMTVRETLDFAGQCQ-GVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMK 287 (1085)
Q Consensus 211 ~~yv~Q~d--~~~~~lTV~E~l~f~~~~~-~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~ 287 (1085)
++||+|++ .+++.+||+||+.++.+.. +.. + .+...+++++++
T Consensus 106 ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~-~---------------------------------~~~~~~~~~~l~ 151 (623)
T PRK10261 106 MAMIFQEPMTSLNPVFTVGEQIAESIRLHQGAS-R---------------------------------EEAMVEAKRMLD 151 (623)
T ss_pred EEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCC-H---------------------------------HHHHHHHHHHHH
Confidence 99999997 5788899999999875432 110 0 001234778899
Q ss_pred HhCCcc---cccccccCcccccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEE
Q 001400 288 ILGLDT---CADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISL 364 (1085)
Q Consensus 288 ~lgL~~---~~dt~vg~~~~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~ 364 (1085)
.+||++ ..+. .+..|||||||||+||+||+.+|++|||||||+|||+.++.++.+.|+++++.. +++|+.+
T Consensus 152 ~~gL~~~~~~~~~-----~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~-g~tvi~i 225 (623)
T PRK10261 152 QVRIPEAQTILSR-----YPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEM-SMGVIFI 225 (623)
T ss_pred HCCCCChhhHHhC-----CCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhc-CCEEEEE
Confidence 999964 2344 445799999999999999999999999999999999999999999999997643 4556678
Q ss_pred ecChhHHHhhcCeEEEecCCeEEEecChhhHHHHHHhCCCCCCCCCChhHHHHhhcCcccccccccCCCCCCCCCChhHH
Q 001400 365 LQPAPEAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVTSKKDQEQYWSNPYLPYRYISPGKF 444 (1085)
Q Consensus 365 ~q~~~~~~~~~D~ii~L~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~ 444 (1085)
+|+..++.++||+|++|++|++++.|+++++.. -|.+....+++..+
T Consensus 226 tHdl~~~~~~adri~vl~~G~i~~~g~~~~~~~--------~~~~~~~~~l~~~~------------------------- 272 (623)
T PRK10261 226 THDMGVVAEIADRVLVMYQGEAVETGSVEQIFH--------APQHPYTRALLAAV------------------------- 272 (623)
T ss_pred cCCHHHHHHhCCEEEEeeCCeecccCCHHHhhc--------CCCChhhhhhhhcc-------------------------
Confidence 999999999999999999999999998765521 00000000000000
Q ss_pred HHHHHhCccccchhhhhcCcccccCCCcccccCCCCCCcHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHh
Q 001400 445 AEAFHSYHTGKNLSEELAVPFDRRFNHPAALSTSKYGEKRSELLKTSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVF 524 (1085)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~ali~g~vf 524 (1085)
+
T Consensus 273 -------------------~------------------------------------------------------------ 273 (623)
T PRK10261 273 -------------------P------------------------------------------------------------ 273 (623)
T ss_pred -------------------C------------------------------------------------------------
Confidence 0
Q ss_pred cCCCCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCcccchHHHHHHHHHHHHHHHHHHHHHHhh
Q 001400 525 FRTTMHHKTIDDGGLYLGALYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIPTSLIESGFWVA 604 (1085)
Q Consensus 525 ~~~~~~~~~~~~~~~~~g~lf~~l~~~~~~~~~~~~~~~~~~~v~~k~r~~~~y~~~ay~l~~~~~~iP~~~i~~~i~~~ 604 (1085)
... .. .+ +. .|
T Consensus 274 -~~~----~~-~~-----------------------------------~~-----------------~~----------- 284 (623)
T PRK10261 274 -QLG----AM-KG-----------------------------------LD-----------------YP----------- 284 (623)
T ss_pred -ccc----cc-cc-----------------------------------cc-----------------CC-----------
Confidence 000 00 00 00 00
Q ss_pred hhhhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHhHcccCHHHHHHHHHHHHHHHHHHhhccccCCCchhHHHHhHhh
Q 001400 605 VTYYVIGYDPNVVRFSRQLLLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSFAMLVVMALGGFIISRDSIPKWWIWGFWV 684 (1085)
Q Consensus 605 i~Y~~~g~~~~~~~f~~~~l~~~~~~~~~~~l~~~i~~~~~~~~va~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~w~~~i 684 (1085)
. ..+.
T Consensus 285 ------------------------------------------------------------------~-~~~~-------- 289 (623)
T PRK10261 285 ------------------------------------------------------------------R-RFPL-------- 289 (623)
T ss_pred ------------------------------------------------------------------c-cccc--------
Confidence 0 0000
Q ss_pred cHHHHHHHHHHHhhhcCCcccccCCCCCcchHHHHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcc
Q 001400 685 SPLMYAQNAASVNEFLGHSWDKKAGNSNFSLGEAILRQRSLFPESYWYWIGVGAMLGYTLLFNALFTFFLSYLNPLGKQQ 764 (1085)
Q Consensus 685 sp~~y~~~a~~~nef~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~w~~~g~ll~~~~~f~~l~~~~l~~~~~~~~~~ 764 (1085)
. ....+.
T Consensus 290 ---------------~---~~~~~~------------------------------------------------------- 296 (623)
T PRK10261 290 ---------------I---SLEHPA------------------------------------------------------- 296 (623)
T ss_pred ---------------c---cccccc-------------------------------------------------------
Confidence 0 000000
Q ss_pred cccchhhhhhHhhhhcCcchhHHHHhhhhcccccCCcccccCCcccccccceeeeccceeeeeccccccccccccCCeEE
Q 001400 765 AVVSKKELQERDRRRKGENVVIELREYLQRSSSLNGKYFKQKGMVLPFQPLSMAFGNINYFVDVPVELKQEGVLEDRLQL 844 (1085)
Q Consensus 765 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~ 844 (1085)
. . .. . ..... .+.. ...+.++|+++.++..... .....+...+
T Consensus 297 ----~----------~-~~--------~----~~~~~-~~~~-------~~~L~~~~l~~~y~~~~~~--~~~~~~~~~~ 339 (623)
T PRK10261 297 ----K----------Q-EP--------P----IEQDT-VVDG-------EPILQVRNLVTRFPLRSGL--LNRVTREVHA 339 (623)
T ss_pred ----c----------c-Cc--------c----ccccc-ccCC-------CceEEEeeeEEEEcCCCcc--ccccCCceEE
Confidence 0 0 00 0 00000 0000 0113444444433210000 0000012569
Q ss_pred eeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCCh------hcccceEEEEccCC--CCCCC
Q 001400 845 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ------ETFARISGYCEQND--IHSPG 916 (1085)
Q Consensus 845 L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~------~~~~~~~gy~~Q~~--~~~~~ 916 (1085)
|+||||+|++||++||+|+||||||||+++|+|..+ +.+|+|.++|.++.. ..+++.++|++|++ .+++.
T Consensus 340 l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~--p~~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~ 417 (623)
T PRK10261 340 VEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVE--SQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLDPR 417 (623)
T ss_pred EeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCC--CCCcEEEECCEECCcCCHHHHHHhcCCeEEEecCchhhcCCC
Confidence 999999999999999999999999999999999876 468999999986532 12456799999997 47889
Q ss_pred CCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCC-cccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCC
Q 001400 917 LTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELT-SLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEP 995 (1085)
Q Consensus 917 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEP 995 (1085)
+||.|++.+....+.. .......+.+.++++.+++. ...+.. +.+|||||||||+|||||+.+|+|||||||
T Consensus 418 ~tv~~~l~~~~~~~~~--~~~~~~~~~~~~~L~~~gL~~~~~~~~-----~~~LSgGqrQRv~iAraL~~~p~llllDEP 490 (623)
T PRK10261 418 QTVGDSIMEPLRVHGL--LPGKAAAARVAWLLERVGLLPEHAWRY-----PHEFSGGQRQRICIARALALNPKVIIADEA 490 (623)
T ss_pred CCHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHHcCCCHHHhhCC-----cccCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 9999999875432211 11233446688999999995 444543 358999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHC-CceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCC
Q 001400 996 TSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1085)
Q Consensus 996 tsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~ 1055 (1085)
|+|||+.++..++++|++++++ |.|||++|||++ .+...||++++|++ |++++.|+..
T Consensus 491 ts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~-~v~~~~dri~vl~~-G~iv~~g~~~ 549 (623)
T PRK10261 491 VSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMA-VVERISHRVAVMYL-GQIVEIGPRR 549 (623)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEecCHH
Confidence 9999999999999999999765 899999999987 47788999999985 7899988754
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-65 Score=615.60 Aligned_cols=451 Identities=20% Similarity=0.312 Sum_probs=342.2
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCC----CCceEEEEccCCCCCCC
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV----PPRTSAYVSQQDWQVAE 223 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~----~~~~~~yv~Q~d~~~~~ 223 (1085)
+++|+|+|++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.
T Consensus 17 ~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 93 (501)
T PRK10762 17 VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRD---AGSILYLGKEVTFNGPKSSQEAGIGIIHQELNLIPQ 93 (501)
T ss_pred eEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHHHHHhCCEEEEEcchhccCC
Confidence 46999999999999999999999999999999999999876 999999998875322 13569999999988999
Q ss_pred CCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCcc
Q 001400 224 MTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEM 303 (1085)
Q Consensus 224 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 303 (1085)
+||+||+.|+.........++ . .....+++++++.+||++..|..++
T Consensus 94 ~tv~e~l~~~~~~~~~~~~~~------~------------------------~~~~~~~~~~l~~~~l~~~~~~~~~--- 140 (501)
T PRK10762 94 LTIAENIFLGREFVNRFGRID------W------------------------KKMYAEADKLLARLNLRFSSDKLVG--- 140 (501)
T ss_pred CcHHHHhhhccccccccCccC------H------------------------HHHHHHHHHHHHHcCCCCCccCchh---
Confidence 999999988643210000000 0 0012247788999999887776554
Q ss_pred cccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEecC
Q 001400 304 LKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSE 383 (1085)
Q Consensus 304 ~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~~ 383 (1085)
.|||||||||+||+||+.+|++|+|||||+|||+.++.++.+.|+++++. +++|+.++|+.+++.++||+|++|++
T Consensus 141 --~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~--~~tvii~sHd~~~~~~~~d~i~~l~~ 216 (501)
T PRK10762 141 --ELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQ--GRGIVYISHRLKEIFEICDDVTVFRD 216 (501)
T ss_pred --hCCHHHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHhCCEEEEEeC
Confidence 59999999999999999999999999999999999999999999998653 45566688999999999999999999
Q ss_pred CeEEEecChhhHHHHHHhCCCCCCCCCChhHHHHhhcCcccccccccCCCCCCCCCChhHHHHHHHhCccccchhhhhcC
Q 001400 384 GQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVTSKKDQEQYWSNPYLPYRYISPGKFAEAFHSYHTGKNLSEELAV 463 (1085)
Q Consensus 384 G~iv~~G~~~~~~~~f~~~G~~~p~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (1085)
|+++..|+.+++.. ....+.+
T Consensus 217 G~i~~~~~~~~~~~--------------------------------------------~~~~~~~--------------- 237 (501)
T PRK10762 217 GQFIAEREVADLTE--------------------------------------------DSLIEMM--------------- 237 (501)
T ss_pred CEEEEecCcCcCCH--------------------------------------------HHHHHHh---------------
Confidence 99998876432100 0000000
Q ss_pred cccccCCCcccccCCCCCCcHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccccchhHHHH
Q 001400 464 PFDRRFNHPAALSTSKYGEKRSELLKTSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHKTIDDGGLYLGA 543 (1085)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~ali~g~vf~~~~~~~~~~~~~~~~~g~ 543 (1085)
+... .
T Consensus 238 -------------------------------------------------------------~~~~-----~--------- 242 (501)
T PRK10762 238 -------------------------------------------------------------VGRK-----L--------- 242 (501)
T ss_pred -------------------------------------------------------------cCCC-----c---------
Confidence 0000 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCcccchHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccHHHHHHHH
Q 001400 544 LYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIPTSLIESGFWVAVTYYVIGYDPNVVRFSRQL 623 (1085)
Q Consensus 544 lf~~l~~~~~~~~~~~~~~~~~~~v~~k~r~~~~y~~~ay~l~~~~~~iP~~~i~~~i~~~i~Y~~~g~~~~~~~f~~~~ 623 (1085)
T Consensus 243 -------------------------------------------------------------------------------- 242 (501)
T PRK10762 243 -------------------------------------------------------------------------------- 242 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHhHcccCHHHHHHHHHHHHHHHHHHhhccccCCCchhHHHHhHhhcHHHHHHHHHHHhhhcCCc
Q 001400 624 LLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSFAMLVVMALGGFIISRDSIPKWWIWGFWVSPLMYAQNAASVNEFLGHS 703 (1085)
Q Consensus 624 l~~~~~~~~~~~l~~~i~~~~~~~~va~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~w~~~isp~~y~~~a~~~nef~~~~ 703 (1085)
T Consensus 243 -------------------------------------------------------------------------------- 242 (501)
T PRK10762 243 -------------------------------------------------------------------------------- 242 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCCCCCcchHHHHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccchhhhhhHhhhhcCcc
Q 001400 704 WDKKAGNSNFSLGEAILRQRSLFPESYWYWIGVGAMLGYTLLFNALFTFFLSYLNPLGKQQAVVSKKELQERDRRRKGEN 783 (1085)
Q Consensus 704 ~~~~~~~~~~~~g~~~l~~~~~~~~~~~~w~~~g~ll~~~~~f~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 783 (1085)
....
T Consensus 243 -~~~~--------------------------------------------------------------------------- 246 (501)
T PRK10762 243 -EDQY--------------------------------------------------------------------------- 246 (501)
T ss_pred -cccc---------------------------------------------------------------------------
Confidence 0000
Q ss_pred hhHHHHhhhhcccccCCcccccCCcccccccceeeeccceeeeeccccccccccccCCeEEeeeeeEEEeCCeEEEEEcc
Q 001400 784 VVIELREYLQRSSSLNGKYFKQKGMVLPFQPLSMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGV 863 (1085)
Q Consensus 784 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~ 863 (1085)
+.. . . + + .+..+.+++++ ..+|+|+||+|++||++||+|+
T Consensus 247 --------~~~--~--~---~------~-~~~~l~~~~l~------------------~~~l~~vsl~i~~Ge~~~liG~ 286 (501)
T PRK10762 247 --------PRL--D--K---A------P-GEVRLKVDNLS------------------GPGVNDVSFTLRKGEILGVSGL 286 (501)
T ss_pred --------ccc--c--c---C------C-CCcEEEEeCcc------------------cCCcccceEEEcCCcEEEEecC
Confidence 000 0 0 0 0 00012233322 1258899999999999999999
Q ss_pred CCCChhHHHhhhhCCCCCCeeeeEEEEcCccCCh----hcccceEEEEccCC---CCCCCCCHHHHHHHhhhhcCCC---
Q 001400 864 SGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ----ETFARISGYCEQND---IHSPGLTVLESLLFSAWLRLPS--- 933 (1085)
Q Consensus 864 nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~----~~~~~~~gy~~Q~~---~~~~~~tv~e~l~~~~~~~~~~--- 933 (1085)
||||||||+++|+|... +.+|+|.++|.++.. ...++.+||++|++ .+++.+|+.||+.+........
T Consensus 287 NGsGKSTLl~~l~G~~~--p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~ 364 (501)
T PRK10762 287 MGAGRTELMKVLYGALP--RTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGG 364 (501)
T ss_pred CCCCHHHHHHHHhCCCC--CCceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCcCCCcHHHHhhhhhhhhhccccc
Confidence 99999999999999866 468999999987532 12345799999996 4678899999998753211000
Q ss_pred cccHHHHHHHHHHHHHHcCCC-cccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 001400 934 EIELETQRAFVEEVMELVELT-SLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVR 1012 (1085)
Q Consensus 934 ~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~ 1012 (1085)
........+.++++++.+++. +..+... ..|||||||||+|||||+.+|+||||||||+|||+.++..+++.|+
T Consensus 365 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~ 439 (501)
T PRK10762 365 SLKHADEQQAVSDFIRLFNIKTPSMEQAI-----GLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLIN 439 (501)
T ss_pred ccCHHHHHHHHHHHHHhcCCCCCCccCch-----hhCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHH
Confidence 011223345678899999984 4555443 5799999999999999999999999999999999999999999999
Q ss_pred HHHHCCceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCCCc
Q 001400 1013 NIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGSK 1057 (1085)
Q Consensus 1013 ~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~~~ 1057 (1085)
++.++|.|||++|||++ .+.+.||++++|++ |+++..|+..+.
T Consensus 440 ~~~~~g~tviivtHd~~-~~~~~~d~v~~l~~-G~i~~~~~~~~~ 482 (501)
T PRK10762 440 QFKAEGLSIILVSSEMP-EVLGMSDRILVMHE-GRISGEFTREQA 482 (501)
T ss_pred HHHHCCCEEEEEcCCHH-HHHhhCCEEEEEEC-CEEEEEeccccC
Confidence 99878999999999986 47788999999985 789988887654
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-65 Score=618.35 Aligned_cols=458 Identities=19% Similarity=0.297 Sum_probs=341.5
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCC----CceEEEEccCCCCCCC
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP----PRTSAYVSQQDWQVAE 223 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 223 (1085)
+++|+|+|+.|++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++..... ++.++||+|++.+++.
T Consensus 18 ~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~ 94 (510)
T PRK09700 18 VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPT---KGTITINNINYNKLDHKLAAQLGIGIIYQELSVIDE 94 (510)
T ss_pred eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCC---ccEEEECCEECCCCCHHHHHHCCeEEEeecccccCC
Confidence 36999999999999999999999999999999999998876 9999999988754332 2469999999988999
Q ss_pred CCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCcc
Q 001400 224 MTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEM 303 (1085)
Q Consensus 224 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 303 (1085)
+||+||+.++..... ..+.. . ..+ . .+...+++++++.+||.+..++.++
T Consensus 95 ~tv~e~l~~~~~~~~--~~~~~-~----------~~~-~-------------~~~~~~~~~~l~~~gl~~~~~~~~~--- 144 (510)
T PRK09700 95 LTVLENLYIGRHLTK--KVCGV-N----------IID-W-------------REMRVRAAMMLLRVGLKVDLDEKVA--- 144 (510)
T ss_pred CcHHHHhhhcccccc--ccccc-c----------ccC-H-------------HHHHHHHHHHHHHcCCCCCcccchh---
Confidence 999999987532100 00000 0 000 0 0012347788999999877776654
Q ss_pred cccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEecC
Q 001400 304 LKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSE 383 (1085)
Q Consensus 304 ~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~~ 383 (1085)
+|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++++. +++|+.++|+..++..+||+|++|++
T Consensus 145 --~LSgG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~--g~tiiivsHd~~~~~~~~d~v~~l~~ 220 (510)
T PRK09700 145 --NLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKE--GTAIVYISHKLAEIRRICDRYTVMKD 220 (510)
T ss_pred --hCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC--CCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 69999999999999999999999999999999999999999999998753 45566688999999999999999999
Q ss_pred CeEEEecChhhHHHHHHhCCCCCCCCCChhHHHHhhcCcccccccccCCCCCCCCCChhHHHHHHHhCccccchhhhhcC
Q 001400 384 GQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVTSKKDQEQYWSNPYLPYRYISPGKFAEAFHSYHTGKNLSEELAV 463 (1085)
Q Consensus 384 G~iv~~G~~~~~~~~f~~~G~~~p~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (1085)
|++++.|+++++.. .+.. +..
T Consensus 221 G~i~~~g~~~~~~~---------------~~~~-----------------------------~~~--------------- 241 (510)
T PRK09700 221 GSSVCSGMVSDVSN---------------DDIV-----------------------------RLM--------------- 241 (510)
T ss_pred CEEeeecchhhCCH---------------HHHH-----------------------------HHh---------------
Confidence 99999887543210 0000 000
Q ss_pred cccccCCCcccccCCCCCCcHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccccchhHHHH
Q 001400 464 PFDRRFNHPAALSTSKYGEKRSELLKTSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHKTIDDGGLYLGA 543 (1085)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~ali~g~vf~~~~~~~~~~~~~~~~~g~ 543 (1085)
.... . .
T Consensus 242 -------------------------------------------------------------~~~~-----~-~------- 247 (510)
T PRK09700 242 -------------------------------------------------------------VGRE-----L-Q------- 247 (510)
T ss_pred -------------------------------------------------------------cCCC-----c-c-------
Confidence 0000 0 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCcccchHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccHHHHHHHH
Q 001400 544 LYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIPTSLIESGFWVAVTYYVIGYDPNVVRFSRQL 623 (1085)
Q Consensus 544 lf~~l~~~~~~~~~~~~~~~~~~~v~~k~r~~~~y~~~ay~l~~~~~~iP~~~i~~~i~~~i~Y~~~g~~~~~~~f~~~~ 623 (1085)
T Consensus 248 -------------------------------------------------------------------------------- 247 (510)
T PRK09700 248 -------------------------------------------------------------------------------- 247 (510)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHhHcccCHHHHHHHHHHHHHHHHHHhhccccCCCchhHHHHhHhhcHHHHHHHHHHHhhhcCCc
Q 001400 624 LLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSFAMLVVMALGGFIISRDSIPKWWIWGFWVSPLMYAQNAASVNEFLGHS 703 (1085)
Q Consensus 624 l~~~~~~~~~~~l~~~i~~~~~~~~va~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~w~~~isp~~y~~~a~~~nef~~~~ 703 (1085)
+ .+
T Consensus 248 ----------------------------------------------~---------------------------~~---- 250 (510)
T PRK09700 248 ----------------------------------------------N---------------------------RF---- 250 (510)
T ss_pred ----------------------------------------------c---------------------------cc----
Confidence 0 00
Q ss_pred ccccCCCCCcchHHHHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccchhhhhhHhhhhcCcc
Q 001400 704 WDKKAGNSNFSLGEAILRQRSLFPESYWYWIGVGAMLGYTLLFNALFTFFLSYLNPLGKQQAVVSKKELQERDRRRKGEN 783 (1085)
Q Consensus 704 ~~~~~~~~~~~~g~~~l~~~~~~~~~~~~w~~~g~ll~~~~~f~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 783 (1085)
. . ..
T Consensus 251 -~----~--------------~~--------------------------------------------------------- 254 (510)
T PRK09700 251 -N----A--------------MK--------------------------------------------------------- 254 (510)
T ss_pred -c----c--------------cc---------------------------------------------------------
Confidence 0 0 00
Q ss_pred hhHHHHhhhhcccccCCcccccCCcccccccceeeeccceeeeeccccccccccccCCeEEeeeeeEEEeCCeEEEEEcc
Q 001400 784 VVIELREYLQRSSSLNGKYFKQKGMVLPFQPLSMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGV 863 (1085)
Q Consensus 784 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~ 863 (1085)
+ ..... .. +..+.++|++.. ++ .+|+|+||+|++||++||+||
T Consensus 255 --------~----~~~~~---~~-------~~~l~~~~l~~~-------------~~--~~l~~isl~i~~Ge~~~l~G~ 297 (510)
T PRK09700 255 --------E----NVSNL---AH-------ETVFEVRNVTSR-------------DR--KKVRDISFSVCRGEILGFAGL 297 (510)
T ss_pred --------c----ccccC---CC-------CcEEEEeCcccc-------------CC--CcccceeEEEcCCcEEEEECC
Confidence 0 00000 00 001333333221 11 379999999999999999999
Q ss_pred CCCChhHHHhhhhCCCCCCeeeeEEEEcCccCCh----hcccceEEEEccC---CCCCCCCCHHHHHHHhhhhc---CCC
Q 001400 864 SGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ----ETFARISGYCEQN---DIHSPGLTVLESLLFSAWLR---LPS 933 (1085)
Q Consensus 864 nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~----~~~~~~~gy~~Q~---~~~~~~~tv~e~l~~~~~~~---~~~ 933 (1085)
||||||||+++|+|..+ +.+|+|.++|.++.. ...++.+||++|+ ..+++.+||+||+.+....+ ...
T Consensus 298 NGsGKSTLlk~i~Gl~~--p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~ 375 (510)
T PRK09700 298 VGSGRTELMNCLFGVDK--RAGGEIRLNGKDISPRSPLDAVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKG 375 (510)
T ss_pred CCCCHHHHHHHHhCCCc--CCCCeEEECCEECCCCCHHHHHHCCcEEccCccccCCCcCCCcHHHHhccccccccccccc
Confidence 99999999999999865 468999999986532 1234579999998 35778899999998753211 000
Q ss_pred --c-ccHHHHHHHHHHHHHHcCCC-cccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH
Q 001400 934 --E-IELETQRAFVEEVMELVELT-SLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMR 1009 (1085)
Q Consensus 934 --~-~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEPtsgLD~~~~~~i~~ 1009 (1085)
. ......++.++++++.+++. +..+..+ ..|||||||||+|||||+.+|+||||||||+|||+.++..+++
T Consensus 376 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~ 450 (510)
T PRK09700 376 AMGLFHEVDEQRTAENQRELLALKCHSVNQNI-----TELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYK 450 (510)
T ss_pred cccccChHHHHHHHHHHHHhcCCCCCCccCcc-----ccCChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHH
Confidence 0 01222334578899999986 5555543 5799999999999999999999999999999999999999999
Q ss_pred HHHHHHHCCceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCC
Q 001400 1010 TVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1085)
Q Consensus 1010 ~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~ 1054 (1085)
.|++++++|.|||++|||++ .+.+.||++++|++ |+++..++.
T Consensus 451 ~l~~l~~~g~tvi~vsHd~~-~~~~~~d~i~~l~~-G~i~~~~~~ 493 (510)
T PRK09700 451 VMRQLADDGKVILMVSSELP-EIITVCDRIAVFCE-GRLTQILTN 493 (510)
T ss_pred HHHHHHHCCCEEEEEcCCHH-HHHhhCCEEEEEEC-CEEEEEecC
Confidence 99999878999999999986 47788999999985 688887765
|
|
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-65 Score=615.06 Aligned_cols=463 Identities=22% Similarity=0.307 Sum_probs=340.3
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCC--CceeeEEEECCccCCCCCC-------CceEEEEccCC
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHH--LQVSGKITYNGHGFKEFVP-------PRTSAYVSQQD 218 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~--~~~~G~i~~~G~~~~~~~~-------~~~~~yv~Q~d 218 (1085)
+.+|+|+|+.|++||+++|+|||||||||||++|+|.++|. .+.+|+|.++|.++..... ++.++|++|++
T Consensus 22 ~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~Q~~ 101 (529)
T PRK15134 22 RTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQEP 101 (529)
T ss_pred eeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHHHHHHHhcCceEEEecCc
Confidence 46999999999999999999999999999999999998752 1248999999998754321 24799999996
Q ss_pred C--CCCCCCHHHHHHHhhhhc-CCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcc--
Q 001400 219 W--QVAEMTVRETLDFAGQCQ-GVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDT-- 293 (1085)
Q Consensus 219 ~--~~~~lTV~E~l~f~~~~~-~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~-- 293 (1085)
. +++.+||+|++.+..... +.. . .....+++++++.+||++
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~gl~~~~ 147 (529)
T PRK15134 102 MVSLNPLHTLEKQLYEVLSLHRGMR----------R------------------------EAARGEILNCLDRVGIRQAA 147 (529)
T ss_pred hhhcCchhhHHHHHHHHHHHhcCCC----------H------------------------HHHHHHHHHHHHHCCCCChH
Confidence 4 567789999987643211 100 0 001234788899999975
Q ss_pred -cccccccCcccccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHH
Q 001400 294 -CADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAY 372 (1085)
Q Consensus 294 -~~dt~vg~~~~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~ 372 (1085)
..+..+ ..|||||||||+|||||+.+|++|+|||||+|||+.++.++.+.|+++++.. +.+||.++|+...+.
T Consensus 148 ~~~~~~~-----~~LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~-g~tvi~vtHd~~~~~ 221 (529)
T PRK15134 148 KRLTDYP-----HQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQEL-NMGLLFITHNLSIVR 221 (529)
T ss_pred HHHhhCC-----cccCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhc-CCeEEEEcCcHHHHH
Confidence 235444 5699999999999999999999999999999999999999999999987643 445666889999999
Q ss_pred hhcCeEEEecCCeEEEecChhhHHHHHHhCCCCCCCCCChhHHHHhhcCcccccccccCCCCCCCCCChhHHHHHHHhCc
Q 001400 373 ELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVTSKKDQEQYWSNPYLPYRYISPGKFAEAFHSYH 452 (1085)
Q Consensus 373 ~~~D~ii~L~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (1085)
.+||+|++|++|++++.|+++++... |.. ...
T Consensus 222 ~~~dri~~l~~G~i~~~g~~~~~~~~--------~~~---------------------------------~~~------- 253 (529)
T PRK15134 222 KLADRVAVMQNGRCVEQNRAATLFSA--------PTH---------------------------------PYT------- 253 (529)
T ss_pred HhcCEEEEEECCEEEEeCCHHHHhhC--------CCC---------------------------------HHH-------
Confidence 99999999999999999876554210 000 000
Q ss_pred cccchhhhhcCcccccCCCcccccCCCCCCcHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHhcCCCCCCC
Q 001400 453 TGKNLSEELAVPFDRRFNHPAALSTSKYGEKRSELLKTSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHK 532 (1085)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~ali~g~vf~~~~~~~~ 532 (1085)
+.+ +...
T Consensus 254 -----------------------------------------~~~----------------------------~~~~---- 260 (529)
T PRK15134 254 -----------------------------------------QKL----------------------------LNSE---- 260 (529)
T ss_pred -----------------------------------------HHH----------------------------HHhC----
Confidence 000 0000
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCcccchHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccc
Q 001400 533 TIDDGGLYLGALYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIPTSLIESGFWVAVTYYVIGY 612 (1085)
Q Consensus 533 ~~~~~~~~~g~lf~~l~~~~~~~~~~~~~~~~~~~v~~k~r~~~~y~~~ay~l~~~~~~iP~~~i~~~i~~~i~Y~~~g~ 612 (1085)
T Consensus 261 -------------------------------------------------------------------------------- 260 (529)
T PRK15134 261 -------------------------------------------------------------------------------- 260 (529)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHhHcccCHHHHHHHHHHHHHHHHHHhhccccCCCchhHHHHhHhhcHHHHHHH
Q 001400 613 DPNVVRFSRQLLLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSFAMLVVMALGGFIISRDSIPKWWIWGFWVSPLMYAQN 692 (1085)
Q Consensus 613 ~~~~~~f~~~~l~~~~~~~~~~~l~~~i~~~~~~~~va~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~w~~~isp~~y~~~ 692 (1085)
+
T Consensus 261 --------------------------------------------------------------~----------------- 261 (529)
T PRK15134 261 --------------------------------------------------------------P----------------- 261 (529)
T ss_pred --------------------------------------------------------------c-----------------
Confidence 0
Q ss_pred HHHHhhhcCCcccccCCCCCcchHHHHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccchhhh
Q 001400 693 AASVNEFLGHSWDKKAGNSNFSLGEAILRQRSLFPESYWYWIGVGAMLGYTLLFNALFTFFLSYLNPLGKQQAVVSKKEL 772 (1085)
Q Consensus 693 a~~~nef~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~w~~~g~ll~~~~~f~~l~~~~l~~~~~~~~~~~~~~~~~~ 772 (1085)
. . .. .
T Consensus 262 -----------------~-----~---------~~--------------------------------~------------ 266 (529)
T PRK15134 262 -----------------S-----G---------DP--------------------------------V------------ 266 (529)
T ss_pred -----------------c-----c---------cc--------------------------------c------------
Confidence 0 0 00 0
Q ss_pred hhHhhhhcCcchhHHHHhhhhcccccCCcccccCCcccccccceeeeccceeeeecccc-ccccccccCCeEEeeeeeEE
Q 001400 773 QERDRRRKGENVVIELREYLQRSSSLNGKYFKQKGMVLPFQPLSMAFGNINYFVDVPVE-LKQEGVLEDRLQLLVNVTGA 851 (1085)
Q Consensus 773 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~v~~~~~-~~~~~~~~~~~~~L~~vs~~ 851 (1085)
. . . . .... .+.++++++.++...+ .+ ...+++.+|+||||+
T Consensus 267 -------~-----------~----~--~----~~~~-------~l~~~~l~~~~~~~~~~~~---~~~~~~~il~~isl~ 308 (529)
T PRK15134 267 -------P-----------L----P--E----PASP-------LLDVEQLQVAFPIRKGILK---RTVDHNVVVKNISFT 308 (529)
T ss_pred -------c-----------c----C--C----CCCC-------cccccCcEEEeecCccccc---cccccceeeecceeE
Confidence 0 0 0 0 0000 1222233322210000 00 000135699999999
Q ss_pred EeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCCh---h---cccceEEEEccCC--CCCCCCCHHHHH
Q 001400 852 FRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---E---TFARISGYCEQND--IHSPGLTVLESL 923 (1085)
Q Consensus 852 i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~---~---~~~~~~gy~~Q~~--~~~~~~tv~e~l 923 (1085)
|++||++||+|+||||||||+++|+|..+ .+|+|+++|.++.. . .+++.+||++|++ .+++.+||.||+
T Consensus 309 i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~---~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l 385 (529)
T PRK15134 309 LRPGETLGLVGESGSGKSTTGLALLRLIN---SQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQII 385 (529)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCcCC---CCcEEEECCEEccccchhhHHHhhhceEEEEeCchhhcCCcccHHHHH
Confidence 99999999999999999999999999763 47999999987532 1 1356799999997 367889999999
Q ss_pred HHhhhhcCCCcccHHHHHHHHHHHHHHcCCC-cccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHH
Q 001400 924 LFSAWLRLPSEIELETQRAFVEEVMELVELT-SLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDAR 1002 (1085)
Q Consensus 924 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEPtsgLD~~ 1002 (1085)
.++...+.. .......++.++++++.+++. ...+.. +..|||||||||+|||||+.+|+||||||||+|||+.
T Consensus 386 ~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~ 459 (529)
T PRK15134 386 EEGLRVHQP-TLSAAQREQQVIAVMEEVGLDPETRHRY-----PAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKT 459 (529)
T ss_pred HHHHHhccc-cCChHHHHHHHHHHHHHcCCCHHHHhcC-----CccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHH
Confidence 886432211 112233445678899999996 344543 3579999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHC-CceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCC
Q 001400 1003 AAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1085)
Q Consensus 1003 ~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~ 1054 (1085)
++..+++.|++++++ |.|||++|||++ .+.+.||++++|++ |+++..|+.
T Consensus 460 ~~~~l~~~l~~~~~~~~~tvi~vsHd~~-~~~~~~d~i~~l~~-G~i~~~~~~ 510 (529)
T PRK15134 460 VQAQILALLKSLQQKHQLAYLFISHDLH-VVRALCHQVIVLRQ-GEVVEQGDC 510 (529)
T ss_pred HHHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHHhcCeEEEEEC-CEEEEEcCH
Confidence 999999999999765 899999999986 47778999999985 688888864
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-64 Score=609.39 Aligned_cols=454 Identities=19% Similarity=0.267 Sum_probs=339.8
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCC----CceEEEEccCCCCCCC
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP----PRTSAYVSQQDWQVAE 223 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 223 (1085)
+.+|+|+|+.|++|++++|+|||||||||||++|+|.++|. +|+|.++|+++..... ++.++|++|++.+++.
T Consensus 24 ~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 100 (510)
T PRK15439 24 VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPD---SGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLLFPN 100 (510)
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHHHHHhCCEEEEeccCccCCC
Confidence 35999999999999999999999999999999999998876 9999999988754321 2469999999988999
Q ss_pred CCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCcc
Q 001400 224 MTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEM 303 (1085)
Q Consensus 224 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 303 (1085)
+||+||+.|.... .. .....++++++.+||++..+..++
T Consensus 101 ~tv~e~l~~~~~~------~~--------------------------------~~~~~~~~~l~~~~l~~~~~~~~~--- 139 (510)
T PRK15439 101 LSVKENILFGLPK------RQ--------------------------------ASMQKMKQLLAALGCQLDLDSSAG--- 139 (510)
T ss_pred CcHHHHhhccccc------ch--------------------------------HHHHHHHHHHHHcCCCccccCChh---
Confidence 9999999875310 00 001236778999999877776554
Q ss_pred cccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEecC
Q 001400 304 LKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSE 383 (1085)
Q Consensus 304 ~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~~ 383 (1085)
.|||||||||+||+||+.+|++|+|||||+|||+.++.++.+.|+++++. +++|+.++|+.+++.++||+|++|++
T Consensus 140 --~LSgG~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~--g~tiiivtHd~~~~~~~~d~i~~l~~ 215 (510)
T PRK15439 140 --SLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQ--GVGIVFISHKLPEIRQLADRISVMRD 215 (510)
T ss_pred --hCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 69999999999999999999999999999999999999999999998753 45666688999999999999999999
Q ss_pred CeEEEecChhhHHHHHHhCCCCCCCCCChhHHHHhhcCcccccccccCCCCCCCCCChhHHHHHHHhCccccchhhhhcC
Q 001400 384 GQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVTSKKDQEQYWSNPYLPYRYISPGKFAEAFHSYHTGKNLSEELAV 463 (1085)
Q Consensus 384 G~iv~~G~~~~~~~~f~~~G~~~p~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (1085)
|++++.|+.+++... +.. +.+...
T Consensus 216 G~i~~~g~~~~~~~~---------------~~~-----------------------------~~~~~~------------ 239 (510)
T PRK15439 216 GTIALSGKTADLSTD---------------DII-----------------------------QAITPA------------ 239 (510)
T ss_pred CEEEEecChHHcCHH---------------HHH-----------------------------HHHhCc------------
Confidence 999999876543210 000 000000
Q ss_pred cccccCCCcccccCCCCCCcHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccccchhHHHH
Q 001400 464 PFDRRFNHPAALSTSKYGEKRSELLKTSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHKTIDDGGLYLGA 543 (1085)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~ali~g~vf~~~~~~~~~~~~~~~~~g~ 543 (1085)
. .. . .....
T Consensus 240 ----~-~~-------------------------------------------------------~-----~~~~~------ 248 (510)
T PRK15439 240 ----A-RE-------------------------------------------------------K-----SLSAS------ 248 (510)
T ss_pred ----c-cc-------------------------------------------------------c-----ccccc------
Confidence 0 00 0 00000
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCcccchHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccHHHHHHHH
Q 001400 544 LYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIPTSLIESGFWVAVTYYVIGYDPNVVRFSRQL 623 (1085)
Q Consensus 544 lf~~l~~~~~~~~~~~~~~~~~~~v~~k~r~~~~y~~~ay~l~~~~~~iP~~~i~~~i~~~i~Y~~~g~~~~~~~f~~~~ 623 (1085)
T Consensus 249 -------------------------------------------------------------------------------- 248 (510)
T PRK15439 249 -------------------------------------------------------------------------------- 248 (510)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHhHcccCHHHHHHHHHHHHHHHHHHhhccccCCCchhHHHHhHhhcHHHHHHHHHHHhhhcCCc
Q 001400 624 LLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSFAMLVVMALGGFIISRDSIPKWWIWGFWVSPLMYAQNAASVNEFLGHS 703 (1085)
Q Consensus 624 l~~~~~~~~~~~l~~~i~~~~~~~~va~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~w~~~isp~~y~~~a~~~nef~~~~ 703 (1085)
. .
T Consensus 249 ---------------------------------------------------~---------------------------~ 250 (510)
T PRK15439 249 ---------------------------------------------------Q---------------------------K 250 (510)
T ss_pred ---------------------------------------------------c---------------------------c
Confidence 0 0
Q ss_pred ccccCCCCCcchHHHHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccchhhhhhHhhhhcCcc
Q 001400 704 WDKKAGNSNFSLGEAILRQRSLFPESYWYWIGVGAMLGYTLLFNALFTFFLSYLNPLGKQQAVVSKKELQERDRRRKGEN 783 (1085)
Q Consensus 704 ~~~~~~~~~~~~g~~~l~~~~~~~~~~~~w~~~g~ll~~~~~f~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 783 (1085)
.. ..+
T Consensus 251 ~~-----------------~~~---------------------------------------------------------- 255 (510)
T PRK15439 251 LW-----------------LEL---------------------------------------------------------- 255 (510)
T ss_pred cc-----------------ccc----------------------------------------------------------
Confidence 00 000
Q ss_pred hhHHHHhhhhcccccCCcccccCCcccccccceeeeccceeeeeccccccccccccCCeEEeeeeeEEEeCCeEEEEEcc
Q 001400 784 VVIELREYLQRSSSLNGKYFKQKGMVLPFQPLSMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGV 863 (1085)
Q Consensus 784 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~ 863 (1085)
+.. .... +. + +..+..++++. .+|+||||+|++|+++||+|+
T Consensus 256 --------~~~--~~~~---~~-~------~~~l~~~~l~~------------------~~l~~isl~i~~Ge~~~l~G~ 297 (510)
T PRK15439 256 --------PGN--RRQQ---AA-G------APVLTVEDLTG------------------EGFRNISLEVRAGEILGLAGV 297 (510)
T ss_pred --------ccc--cccc---CC-C------CceEEEeCCCC------------------CCccceeEEEcCCcEEEEECC
Confidence 000 0000 00 0 00123333320 147899999999999999999
Q ss_pred CCCChhHHHhhhhCCCCCCeeeeEEEEcCccCChh----cccceEEEEccCC---CCCCCCCHHHHHHHhhhhcCCCccc
Q 001400 864 SGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE----TFARISGYCEQND---IHSPGLTVLESLLFSAWLRLPSEIE 936 (1085)
Q Consensus 864 nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~----~~~~~~gy~~Q~~---~~~~~~tv~e~l~~~~~~~~~~~~~ 936 (1085)
||||||||+++|+|..+ +.+|+|.++|.++... ..++.++|++|++ .+++.+|+.|++......+......
T Consensus 298 NGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~ 375 (510)
T PRK15439 298 VGAGRTELAETLYGLRP--ARGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIK 375 (510)
T ss_pred CCCCHHHHHHHHcCCCC--CCCcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccCCCcHHHHHHhhhhhhhccccC
Confidence 99999999999999865 4589999999865321 1345689999984 4778899999986421111010001
Q ss_pred HHHHHHHHHHHHHHcCCC-cccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 001400 937 LETQRAFVEEVMELVELT-SLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIV 1015 (1085)
Q Consensus 937 ~~~~~~~~~~~l~~~~l~-~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~ 1015 (1085)
....++.++++++.+++. +..+..+ ..|||||||||+|||||+.+|+||||||||+|||+.+++.+++.|++++
T Consensus 376 ~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgG~kqrl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~ 450 (510)
T PRK15439 376 PARENAVLERYRRALNIKFNHAEQAA-----RTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIA 450 (510)
T ss_pred hHHHHHHHHHHHHHcCCCCCCccCcc-----ccCCcHHHHHHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHH
Confidence 122335578899999986 5555543 5799999999999999999999999999999999999999999999998
Q ss_pred HCCceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCCC
Q 001400 1016 NTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGS 1056 (1085)
Q Consensus 1016 ~~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~~ 1056 (1085)
++|.|||++|||++ .+.+.||++++|++ |++++.|..++
T Consensus 451 ~~g~tiIivsHd~~-~i~~~~d~i~~l~~-G~i~~~~~~~~ 489 (510)
T PRK15439 451 AQNVAVLFISSDLE-EIEQMADRVLVMHQ-GEISGALTGAA 489 (510)
T ss_pred hCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEEcccc
Confidence 78999999999987 47788999999985 78998887654
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-64 Score=608.84 Aligned_cols=460 Identities=20% Similarity=0.294 Sum_probs=339.6
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCC----CceEEEEccCCCCCCC
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP----PRTSAYVSQQDWQVAE 223 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 223 (1085)
+++|+|+|+.+++|++++|+|||||||||||++|+|.+++. +.+|+|.++|+++..... ++.++||+|++.+++.
T Consensus 14 ~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~-~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 92 (500)
T TIGR02633 14 VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHG-TWDGEIYWSGSPLKASNIRDTERAGIVIIHQELTLVPE 92 (500)
T ss_pred eEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC-CCCeEEEECCEECCCCCHHHHHhCCEEEEeeccccCCC
Confidence 46999999999999999999999999999999999988751 238999999988754321 3569999999988999
Q ss_pred CCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccc-cccccCc
Q 001400 224 MTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCA-DTLVGDE 302 (1085)
Q Consensus 224 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~-dt~vg~~ 302 (1085)
+||+||+.++......+...+ . .....+++++++.+||.+.. ++.+
T Consensus 93 ~tv~~~l~~~~~~~~~~~~~~------~------------------------~~~~~~~~~~l~~~~l~~~~~~~~~--- 139 (500)
T TIGR02633 93 LSVAENIFLGNEITLPGGRMA------Y------------------------NAMYLRAKNLLRELQLDADNVTRPV--- 139 (500)
T ss_pred CcHHHHHHhhccccccccccC------H------------------------HHHHHHHHHHHHHcCCCCCcccCch---
Confidence 999999988643210000000 0 00122477889999997654 3334
Q ss_pred ccccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEec
Q 001400 303 MLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLS 382 (1085)
Q Consensus 303 ~~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~ 382 (1085)
..|||||||||+||+||+.+|++|+|||||+|||+.++.++.+.|+++++. +++|+.++|+..++.++||+|++|+
T Consensus 140 --~~LSgG~~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~--g~tviiitHd~~~~~~~~d~i~~l~ 215 (500)
T TIGR02633 140 --GDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAH--GVACVYISHKLNEVKAVCDTICVIR 215 (500)
T ss_pred --hhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC--CCEEEEEeCcHHHHHHhCCEEEEEe
Confidence 469999999999999999999999999999999999999999999998753 4556668899999999999999999
Q ss_pred CCeEEEecChhhHHHHHHhCCCCCCCCCChhHHHHhhcCcccccccccCCCCCCCCCChhHHHHHHHhCccccchhhhhc
Q 001400 383 EGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVTSKKDQEQYWSNPYLPYRYISPGKFAEAFHSYHTGKNLSEELA 462 (1085)
Q Consensus 383 ~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (1085)
+|++++.|+.+++.. ....+.
T Consensus 216 ~G~i~~~~~~~~~~~--------------------------------------------~~~~~~--------------- 236 (500)
T TIGR02633 216 DGQHVATKDMSTMSE--------------------------------------------DDIITM--------------- 236 (500)
T ss_pred CCeEeeecCcccCCH--------------------------------------------HHHHHH---------------
Confidence 999987764321100 000000
Q ss_pred CcccccCCCcccccCCCCCCcHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccccchhHHH
Q 001400 463 VPFDRRFNHPAALSTSKYGEKRSELLKTSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHKTIDDGGLYLG 542 (1085)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~ali~g~vf~~~~~~~~~~~~~~~~~g 542 (1085)
+....
T Consensus 237 -------------------------------------------------------------~~~~~-------------- 241 (500)
T TIGR02633 237 -------------------------------------------------------------MVGRE-------------- 241 (500)
T ss_pred -------------------------------------------------------------HhCcc--------------
Confidence 00000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCcccchHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccHHHHHHH
Q 001400 543 ALYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIPTSLIESGFWVAVTYYVIGYDPNVVRFSRQ 622 (1085)
Q Consensus 543 ~lf~~l~~~~~~~~~~~~~~~~~~~v~~k~r~~~~y~~~ay~l~~~~~~iP~~~i~~~i~~~i~Y~~~g~~~~~~~f~~~ 622 (1085)
T Consensus 242 -------------------------------------------------------------------------------- 241 (500)
T TIGR02633 242 -------------------------------------------------------------------------------- 241 (500)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHhHcccCHHHHHHHHHHHHHHHHHHhhccccCCCchhHHHHhHhhcHHHHHHHHHHHhhhcCC
Q 001400 623 LLLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSFAMLVVMALGGFIISRDSIPKWWIWGFWVSPLMYAQNAASVNEFLGH 702 (1085)
Q Consensus 623 ~l~~~~~~~~~~~l~~~i~~~~~~~~va~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~w~~~isp~~y~~~a~~~nef~~~ 702 (1085)
.+
T Consensus 242 ---------------------------------------------------~~--------------------------- 243 (500)
T TIGR02633 242 ---------------------------------------------------IT--------------------------- 243 (500)
T ss_pred ---------------------------------------------------cc---------------------------
Confidence 00
Q ss_pred cccccCCCCCcchHHHHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccchhhhhhHhhhhcCc
Q 001400 703 SWDKKAGNSNFSLGEAILRQRSLFPESYWYWIGVGAMLGYTLLFNALFTFFLSYLNPLGKQQAVVSKKELQERDRRRKGE 782 (1085)
Q Consensus 703 ~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~w~~~g~ll~~~~~f~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 782 (1085)
. ..
T Consensus 244 -------~--------------~~-------------------------------------------------------- 246 (500)
T TIGR02633 244 -------S--------------LY-------------------------------------------------------- 246 (500)
T ss_pred -------c--------------cc--------------------------------------------------------
Confidence 0 00
Q ss_pred chhHHHHhhhhcccccCCcccccCCcccccccceeeeccceeeeeccccccccccccCCeEEeeeeeEEEeCCeEEEEEc
Q 001400 783 NVVIELREYLQRSSSLNGKYFKQKGMVLPFQPLSMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVG 862 (1085)
Q Consensus 783 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G 862 (1085)
+.. . .. ... ..+.++|+++.+. ..++..+|+|+||+|++||++||+|
T Consensus 247 ---------~~~--~-~~----~~~-------~~l~~~~l~~~~~----------~~~~~~~l~~is~~i~~Ge~~~l~G 293 (500)
T TIGR02633 247 ---------PHE--P-HE----IGD-------VILEARNLTCWDV----------INPHRKRVDDVSFSLRRGEILGVAG 293 (500)
T ss_pred ---------ccc--c-cC----CCC-------ceEEEeCCccccc----------ccccccccccceeEEeCCcEEEEeC
Confidence 000 0 00 000 0122333322110 0012458999999999999999999
Q ss_pred cCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCCh----hcccceEEEEccCC---CCCCCCCHHHHHHHhhhhcCC--C
Q 001400 863 VSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ----ETFARISGYCEQND---IHSPGLTVLESLLFSAWLRLP--S 933 (1085)
Q Consensus 863 ~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~----~~~~~~~gy~~Q~~---~~~~~~tv~e~l~~~~~~~~~--~ 933 (1085)
+||||||||+++|+|..++ +.+|+|.++|.++.. ...++.+||++|++ .+++.+||+||+.++..-... .
T Consensus 294 ~NGsGKSTLl~~l~G~~~p-~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~ 372 (500)
T TIGR02633 294 LVGAGRTELVQALFGAYPG-KFEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKM 372 (500)
T ss_pred CCCCCHHHHHHHHhCCCCC-CCCeEEEECCEECCCCCHHHHHhCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCC
Confidence 9999999999999998652 247999999987532 23456799999995 478899999999875321110 0
Q ss_pred cccHHHHHHHHHHHHHHcCCCc-ccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 001400 934 EIELETQRAFVEEVMELVELTS-LSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVR 1012 (1085)
Q Consensus 934 ~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~ 1012 (1085)
........+.++++++.+++.+ ..+..+ ..||||||||++|||||+.+|++|||||||+|||+.++..+++.|+
T Consensus 373 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~ 447 (500)
T TIGR02633 373 RIDAAAELQIIGSAIQRLKVKTASPFLPI-----GRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLIN 447 (500)
T ss_pred cCCHHHHHHHHHHHHHhcCccCCCccCcc-----ccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHH
Confidence 1122333456788999999853 344433 5799999999999999999999999999999999999999999999
Q ss_pred HHHHCCceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCC
Q 001400 1013 NIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1085)
Q Consensus 1013 ~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~ 1055 (1085)
+++++|.|||++|||++ ++.+.||++++|++ |+++..++..
T Consensus 448 ~l~~~g~tviivsHd~~-~~~~~~d~v~~l~~-G~i~~~~~~~ 488 (500)
T TIGR02633 448 QLAQEGVAIIVVSSELA-EVLGLSDRVLVIGE-GKLKGDFVNH 488 (500)
T ss_pred HHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEEccc
Confidence 99888999999999987 47788999999985 6888777654
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-64 Score=610.42 Aligned_cols=200 Identities=25% Similarity=0.350 Sum_probs=164.5
Q ss_pred eEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEc-Ccc---CCh------hcccceEEEEccCC
Q 001400 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYIS-GYP---KRQ------ETFARISGYCEQND 911 (1085)
Q Consensus 842 ~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~-g~~---~~~------~~~~~~~gy~~Q~~ 911 (1085)
..+|+|+||+|++||++||+|+||||||||+++|+|..+ +.+|+|.++ |.+ ... ...++.+||++|++
T Consensus 297 ~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~--p~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~i~~v~q~~ 374 (520)
T TIGR03269 297 VKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLE--PTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEY 374 (520)
T ss_pred ceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEEecCCccccccccchhhHHHHhhhEEEEccCc
Confidence 469999999999999999999999999999999999865 468999996 532 111 12345699999998
Q ss_pred CCCCCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCc-----ccccccCCCCCCCCCHHHHHHHHHHHHHhcC
Q 001400 912 IHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTS-----LSGALIGLPGINGLSTEQRKRLTIAVELVAN 986 (1085)
Q Consensus 912 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~ 986 (1085)
.+++.+||.||+.+...+. .......+.+.++++.+++.+ ..+.. +.+|||||||||+|||||+.+
T Consensus 375 ~l~~~~tv~e~l~~~~~~~----~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~-----~~~LSgGq~qrv~laral~~~ 445 (520)
T TIGR03269 375 DLYPHRTVLDNLTEAIGLE----LPDELARMKAVITLKMVGFDEEKAEEILDKY-----PDELSEGERHRVALAQVLIKE 445 (520)
T ss_pred ccCCCCcHHHHHHHHHHcC----CCHHHHHHHHHHHHHhCCCCCccchhhhhCC-----hhhCCHHHHHHHHHHHHHhcC
Confidence 8889999999998753221 112223456788999999864 23333 357999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCC
Q 001400 987 PSIVFMDEPTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1085)
Q Consensus 987 p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~ 1054 (1085)
|+||||||||+|||+.+++.+++.|++++++ |.|||++|||++ .+.+.||++++|++ |+++..|+.
T Consensus 446 p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~-~~~~~~d~i~~l~~-G~i~~~g~~ 512 (520)
T TIGR03269 446 PRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMD-FVLDVCDRAALMRD-GKIVKIGDP 512 (520)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence 9999999999999999999999999999764 899999999987 47788999999985 688888764
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-64 Score=606.75 Aligned_cols=453 Identities=20% Similarity=0.293 Sum_probs=339.9
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCC----CCceEEEEccCCCCCCC
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV----PPRTSAYVSQQDWQVAE 223 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~----~~~~~~yv~Q~d~~~~~ 223 (1085)
+.+|+|+|+++++|++++|+|||||||||||++|+|.++|. +|+|.++|.++.... .++.++||+|++.+++.
T Consensus 17 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~ 93 (501)
T PRK11288 17 VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPD---AGSILIDGQEMRFASTTAALAAGVAIIYQELHLVPE 93 (501)
T ss_pred EEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEECCCCCHHHHHhCCEEEEEechhccCC
Confidence 35999999999999999999999999999999999998776 999999998875322 24579999999988999
Q ss_pred CCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCcc
Q 001400 224 MTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEM 303 (1085)
Q Consensus 224 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 303 (1085)
+||+||+.++......+. . +. .+...+++++++.+||++..+..+
T Consensus 94 ~tv~~~l~~~~~~~~~~~-~----------------~~--------------~~~~~~~~~~l~~~~l~~~~~~~~---- 138 (501)
T PRK11288 94 MTVAENLYLGQLPHKGGI-V----------------NR--------------RLLNYEAREQLEHLGVDIDPDTPL---- 138 (501)
T ss_pred CCHHHHHHhcccccccCC-C----------------CH--------------HHHHHHHHHHHHHcCCCCCcCCch----
Confidence 999999988532100000 0 00 001224778899999987666554
Q ss_pred cccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEecC
Q 001400 304 LKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSE 383 (1085)
Q Consensus 304 ~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~~ 383 (1085)
..|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++++. +++|+.++|+..++..+||+|++|++
T Consensus 139 -~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~--g~tiiiitHd~~~~~~~~d~i~~l~~ 215 (501)
T PRK11288 139 -KYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAE--GRVILYVSHRMEEIFALCDAITVFKD 215 (501)
T ss_pred -hhCCHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhC--CCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 469999999999999999999999999999999999999999999998653 45566688999999999999999999
Q ss_pred CeEEEecChhhHHHHHHhCCCCCCCCCChhHHHHhhcCcccccccccCCCCCCCCCChhHHHHHHHhCccccchhhhhcC
Q 001400 384 GQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVTSKKDQEQYWSNPYLPYRYISPGKFAEAFHSYHTGKNLSEELAV 463 (1085)
Q Consensus 384 G~iv~~G~~~~~~~~f~~~G~~~p~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (1085)
|+++..++.... . +..+..+.
T Consensus 216 G~i~~~~~~~~~------------------------------~-------------~~~~~~~~---------------- 236 (501)
T PRK11288 216 GRYVATFDDMAQ------------------------------V-------------DRDQLVQA---------------- 236 (501)
T ss_pred CEEEeecCcccc------------------------------C-------------CHHHHHHH----------------
Confidence 999865421000 0 00000000
Q ss_pred cccccCCCcccccCCCCCCcHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccccchhHHHH
Q 001400 464 PFDRRFNHPAALSTSKYGEKRSELLKTSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHKTIDDGGLYLGA 543 (1085)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~ali~g~vf~~~~~~~~~~~~~~~~~g~ 543 (1085)
+.... .
T Consensus 237 ------------------------------------------------------------~~~~~-----~--------- 242 (501)
T PRK11288 237 ------------------------------------------------------------MVGRE-----I--------- 242 (501)
T ss_pred ------------------------------------------------------------hcCCC-----c---------
Confidence 00000 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCcccchHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccHHHHHHHH
Q 001400 544 LYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIPTSLIESGFWVAVTYYVIGYDPNVVRFSRQL 623 (1085)
Q Consensus 544 lf~~l~~~~~~~~~~~~~~~~~~~v~~k~r~~~~y~~~ay~l~~~~~~iP~~~i~~~i~~~i~Y~~~g~~~~~~~f~~~~ 623 (1085)
T Consensus 243 -------------------------------------------------------------------------------- 242 (501)
T PRK11288 243 -------------------------------------------------------------------------------- 242 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHhHcccCHHHHHHHHHHHHHHHHHHhhccccCCCchhHHHHhHhhcHHHHHHHHHHHhhhcCCc
Q 001400 624 LLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSFAMLVVMALGGFIISRDSIPKWWIWGFWVSPLMYAQNAASVNEFLGHS 703 (1085)
Q Consensus 624 l~~~~~~~~~~~l~~~i~~~~~~~~va~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~w~~~isp~~y~~~a~~~nef~~~~ 703 (1085)
T Consensus 243 -------------------------------------------------------------------------------- 242 (501)
T PRK11288 243 -------------------------------------------------------------------------------- 242 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCCCCCcchHHHHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccchhhhhhHhhhhcCcc
Q 001400 704 WDKKAGNSNFSLGEAILRQRSLFPESYWYWIGVGAMLGYTLLFNALFTFFLSYLNPLGKQQAVVSKKELQERDRRRKGEN 783 (1085)
Q Consensus 704 ~~~~~~~~~~~~g~~~l~~~~~~~~~~~~w~~~g~ll~~~~~f~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 783 (1085)
. . .. . .
T Consensus 243 -~----~--------------~~-------------------------------~------------------------~ 248 (501)
T PRK11288 243 -G----D--------------IY-------------------------------G------------------------Y 248 (501)
T ss_pred -c----c--------------cc-------------------------------c------------------------c
Confidence 0 0 00 0 0
Q ss_pred hhHHHHhhhhcccccCCcccccCCcccccccceeeeccceeeeeccccccccccccCCeEEeeeeeEEEeCCeEEEEEcc
Q 001400 784 VVIELREYLQRSSSLNGKYFKQKGMVLPFQPLSMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGV 863 (1085)
Q Consensus 784 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~ 863 (1085)
. + . . . .+..+.++++++ ..+++|+||+|++||++||+||
T Consensus 249 -~------~----~--~----~-------~~~~l~~~~~~~-----------------~~~l~~isl~i~~Ge~~~iiG~ 287 (501)
T PRK11288 249 -R------P----R--P----L-------GEVRLRLDGLKG-----------------PGLREPISFSVRAGEIVGLFGL 287 (501)
T ss_pred -c------c----c--C----C-------CCcEEEEecccc-----------------CCcccceeEEEeCCcEEEEEcC
Confidence 0 0 0 0 0 001123333321 1378999999999999999999
Q ss_pred CCCChhHHHhhhhCCCCCCeeeeEEEEcCccCCh----hcccceEEEEccCC---CCCCCCCHHHHHHHhhhhcC-CCc-
Q 001400 864 SGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ----ETFARISGYCEQND---IHSPGLTVLESLLFSAWLRL-PSE- 934 (1085)
Q Consensus 864 nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~----~~~~~~~gy~~Q~~---~~~~~~tv~e~l~~~~~~~~-~~~- 934 (1085)
||||||||+++|+|..+ +.+|+|.++|.++.. ...++.++|++|++ .+++.+|+.||+.++..... +..
T Consensus 288 NGsGKSTLlk~l~G~~~--p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~ 365 (501)
T PRK11288 288 VGAGRSELMKLLYGATR--RTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGC 365 (501)
T ss_pred CCCCHHHHHHHHcCCCc--CCCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcCCCCHHHHhccccchhhccccc
Confidence 99999999999999865 468999999986532 12346799999986 47888999999987532111 000
Q ss_pred -ccHHHHHHHHHHHHHHcCCC-cccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 001400 935 -IELETQRAFVEEVMELVELT-SLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVR 1012 (1085)
Q Consensus 935 -~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~ 1012 (1085)
......++.++++++.+++. +..+..+ ..|||||||||+|||+|+.+|+||||||||+|||+.++..+++.|+
T Consensus 366 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGq~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~ 440 (501)
T PRK11288 366 LINNRWEAENADRFIRSLNIKTPSREQLI-----MNLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIY 440 (501)
T ss_pred ccChHHHHHHHHHHHHhcCcccCCccCcc-----ccCCHHHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHH
Confidence 01222335678899999984 4555543 5799999999999999999999999999999999999999999999
Q ss_pred HHHHCCceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCCCch
Q 001400 1013 NIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGSKS 1058 (1085)
Q Consensus 1013 ~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~~~~ 1058 (1085)
+++++|.|||++|||++ ++.+.||++++|++ |++++.|..++-+
T Consensus 441 ~l~~~g~tviivsHd~~-~~~~~~d~i~~l~~-g~i~~~~~~~~~~ 484 (501)
T PRK11288 441 ELAAQGVAVLFVSSDLP-EVLGVADRIVVMRE-GRIAGELAREQAT 484 (501)
T ss_pred HHHhCCCEEEEECCCHH-HHHhhCCEEEEEEC-CEEEEEEccccCC
Confidence 99888999999999987 47788999999984 7899999876543
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-63 Score=654.89 Aligned_cols=209 Identities=20% Similarity=0.264 Sum_probs=173.2
Q ss_pred eeeeccceeeeeccccccccccccCCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccC
Q 001400 816 SMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPK 895 (1085)
Q Consensus 816 ~~~~~~~~y~v~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 895 (1085)
.+.|+|+++.++. +...+|+||||+|+|||++||+|+||||||||+++|+|... .+|+|.|||.++
T Consensus 1217 ~I~f~nVs~~Y~~-----------~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~---~~G~I~IdG~di 1282 (1490)
T TIGR01271 1217 QMDVQGLTAKYTE-----------AGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS---TEGEIQIDGVSW 1282 (1490)
T ss_pred eEEEEEEEEEeCC-----------CCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC---CCcEEEECCEEc
Confidence 5777887776631 23579999999999999999999999999999999999864 479999999987
Q ss_pred Ch---hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCccc-------ccccCCCC
Q 001400 896 RQ---ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLS-------GALIGLPG 965 (1085)
Q Consensus 896 ~~---~~~~~~~gy~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~ 965 (1085)
.. ..+++.++|+||++.++++ |++|||.... ...++.++++++.+++.+.. |..++. +
T Consensus 1283 ~~i~~~~lR~~is~IpQdp~LF~G-TIR~NLdp~~----------~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e-~ 1350 (1490)
T TIGR01271 1283 NSVTLQTWRKAFGVIPQKVFIFSG-TFRKNLDPYE----------QWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVD-G 1350 (1490)
T ss_pred ccCCHHHHHhceEEEeCCCccCcc-CHHHHhCccc----------CCCHHHHHHHHHHCCCHHHHHhCcccccccccc-C
Confidence 53 4578899999999999976 9999995321 11234578889888885432 333333 2
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEecC
Q 001400 966 INGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 1045 (1085)
Q Consensus 966 ~~~LS~Gqrqrl~iA~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~g 1045 (1085)
+.+||||||||+||||||+++|+||+||||||+||+++.+.|++.|++.. +++|||+|+|+++ ....||+|++|++
T Consensus 1351 G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~-~~~TvI~IaHRl~--ti~~~DrIlvL~~- 1426 (1490)
T TIGR01271 1351 GYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSF-SNCTVILSEHRVE--ALLECQQFLVIEG- 1426 (1490)
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH--HHHhCCEEEEEEC-
Confidence 35799999999999999999999999999999999999999999999864 5899999999975 5677999999985
Q ss_pred cEEEEecCC
Q 001400 1046 GELIYAGPL 1054 (1085)
Q Consensus 1046 G~~~~~g~~ 1054 (1085)
|+++..|+.
T Consensus 1427 G~ivE~g~p 1435 (1490)
T TIGR01271 1427 SSVKQYDSI 1435 (1490)
T ss_pred CEEEEeCCH
Confidence 789888874
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-63 Score=657.54 Aligned_cols=211 Identities=22% Similarity=0.274 Sum_probs=173.9
Q ss_pred eeeeccceeeeeccccccccccccCCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccC
Q 001400 816 SMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPK 895 (1085)
Q Consensus 816 ~~~~~~~~y~v~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 895 (1085)
.+.|+|+++.++. +...+|+||||+|+|||++||+|+||||||||+++|.|... +.+|+|.|||.++
T Consensus 1308 ~I~f~nVsf~Y~~-----------~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~--p~~G~I~IDG~di 1374 (1560)
T PTZ00243 1308 SLVFEGVQMRYRE-----------GLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVE--VCGGEIRVNGREI 1374 (1560)
T ss_pred eEEEEEEEEEeCC-----------CCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEc
Confidence 4677777766521 22459999999999999999999999999999999999876 5689999999987
Q ss_pred Ch---hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCccc-------ccccCCCC
Q 001400 896 RQ---ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLS-------GALIGLPG 965 (1085)
Q Consensus 896 ~~---~~~~~~~gy~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~ 965 (1085)
.. ..+++.+||+||++.+|.+ |++|||.... +. .++.++++++.+++.+.. |..++. +
T Consensus 1375 ~~i~l~~LR~~I~iVpQdp~LF~g-TIreNIdp~~------~~----sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge-~ 1442 (1560)
T PTZ00243 1375 GAYGLRELRRQFSMIPQDPVLFDG-TVRQNVDPFL------EA----SSAEVWAALELVGLRERVASESEGIDSRVLE-G 1442 (1560)
T ss_pred ccCCHHHHHhcceEECCCCccccc-cHHHHhCccc------CC----CHHHHHHHHHHCCChHHHhhCcccccccccC-C
Confidence 53 5678899999999999876 9999995311 11 234578888888886542 333333 2
Q ss_pred CCCCCHHHHHHHHHHHHHhcC-CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEec
Q 001400 966 INGLSTEQRKRLTIAVELVAN-PSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKR 1044 (1085)
Q Consensus 966 ~~~LS~Gqrqrl~iA~aL~~~-p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~ 1044 (1085)
+.+||||||||+||||||+++ |+||+||||||+||+++.+.|++.|++.. +++|||+|+|+++ ....||+|++|++
T Consensus 1443 G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~-~~~TvI~IAHRl~--ti~~~DrIlVLd~ 1519 (1560)
T PTZ00243 1443 GSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAF-SAYTVITIAHRLH--TVAQYDKIIVMDH 1519 (1560)
T ss_pred cCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHC-CCCEEEEEeccHH--HHHhCCEEEEEEC
Confidence 357999999999999999996 89999999999999999999999999864 5899999999974 6678999999985
Q ss_pred CcEEEEecCCC
Q 001400 1045 GGELIYAGPLG 1055 (1085)
Q Consensus 1045 gG~~~~~g~~~ 1055 (1085)
|++++.|+..
T Consensus 1520 -G~VvE~Gt~~ 1529 (1560)
T PTZ00243 1520 -GAVAEMGSPR 1529 (1560)
T ss_pred -CEEEEECCHH
Confidence 7999988753
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-63 Score=596.69 Aligned_cols=451 Identities=18% Similarity=0.264 Sum_probs=336.3
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCC----CCceEEEEccCCCCCCC
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV----PPRTSAYVSQQDWQVAE 223 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~----~~~~~~yv~Q~d~~~~~ 223 (1085)
+++|+|+|+.+++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++.... .++.++|++|++.+++.
T Consensus 11 ~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 87 (491)
T PRK10982 11 VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKD---SGSILFQGKEIDFKSSKEALENGISMVHQELNLVLQ 87 (491)
T ss_pred EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC---ceEEEECCEECCCCCHHHHHhCCEEEEecccccccC
Confidence 46999999999999999999999999999999999998876 999999998875432 13579999999888899
Q ss_pred CCHHHHHHHhhh-hcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCc
Q 001400 224 MTVRETLDFAGQ-CQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDE 302 (1085)
Q Consensus 224 lTV~E~l~f~~~-~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 302 (1085)
+||+||+.++.. ..+.. .+ . .+....++++++.+||++..++.+
T Consensus 88 ~tv~~~l~~~~~~~~~~~--~~----------------~--------------~~~~~~~~~~l~~~~l~~~~~~~~--- 132 (491)
T PRK10982 88 RSVMDNMWLGRYPTKGMF--VD----------------Q--------------DKMYRDTKAIFDELDIDIDPRAKV--- 132 (491)
T ss_pred CCHHHHhhcccccccccc--cC----------------H--------------HHHHHHHHHHHHHcCCCCCccCch---
Confidence 999999987531 11000 00 0 001124778899999987766655
Q ss_pred ccccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEec
Q 001400 303 MLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLS 382 (1085)
Q Consensus 303 ~~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~ 382 (1085)
..|||||||||+||+||+.+|++|+|||||+|||+.++.++.+.|+++++. +.+|+.++|+.+++..+||+|++|+
T Consensus 133 --~~LSgGq~qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~--g~tvii~tH~~~~~~~~~d~i~~l~ 208 (491)
T PRK10982 133 --ATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKER--GCGIVYISHKMEEIFQLCDEITILR 208 (491)
T ss_pred --hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC--CCEEEEEecCHHHHHHhCCEEEEEE
Confidence 469999999999999999999999999999999999999999999998653 4456668899999999999999999
Q ss_pred CCeEEEecChhhHHHHHHhCCCCCCCCCChhHHHHhhcCcccccccccCCCCCCCCCChhHHHHHHHhCccccchhhhhc
Q 001400 383 EGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVTSKKDQEQYWSNPYLPYRYISPGKFAEAFHSYHTGKNLSEELA 462 (1085)
Q Consensus 383 ~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (1085)
+|+++..|+.+++.. .+..+.+
T Consensus 209 ~G~i~~~~~~~~~~~--------------------------------------------~~~~~~~-------------- 230 (491)
T PRK10982 209 DGQWIATQPLAGLTM--------------------------------------------DKIIAMM-------------- 230 (491)
T ss_pred CCEEEeecChhhCCH--------------------------------------------HHHHHHH--------------
Confidence 999998876432100 0000000
Q ss_pred CcccccCCCcccccCCCCCCcHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccccchhHHH
Q 001400 463 VPFDRRFNHPAALSTSKYGEKRSELLKTSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHKTIDDGGLYLG 542 (1085)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~ali~g~vf~~~~~~~~~~~~~~~~~g 542 (1085)
....
T Consensus 231 --------------------------------------------------------------~~~~-------------- 234 (491)
T PRK10982 231 --------------------------------------------------------------VGRS-------------- 234 (491)
T ss_pred --------------------------------------------------------------hCCC--------------
Confidence 0000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCcccchHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccHHHHHHH
Q 001400 543 ALYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIPTSLIESGFWVAVTYYVIGYDPNVVRFSRQ 622 (1085)
Q Consensus 543 ~lf~~l~~~~~~~~~~~~~~~~~~~v~~k~r~~~~y~~~ay~l~~~~~~iP~~~i~~~i~~~i~Y~~~g~~~~~~~f~~~ 622 (1085)
T Consensus 235 -------------------------------------------------------------------------------- 234 (491)
T PRK10982 235 -------------------------------------------------------------------------------- 234 (491)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHhHcccCHHHHHHHHHHHHHHHHHHhhccccCCCchhHHHHhHhhcHHHHHHHHHHHhhhcCC
Q 001400 623 LLLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSFAMLVVMALGGFIISRDSIPKWWIWGFWVSPLMYAQNAASVNEFLGH 702 (1085)
Q Consensus 623 ~l~~~~~~~~~~~l~~~i~~~~~~~~va~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~w~~~isp~~y~~~a~~~nef~~~ 702 (1085)
+
T Consensus 235 ---------------------------------------------------~---------------------------- 235 (491)
T PRK10982 235 ---------------------------------------------------L---------------------------- 235 (491)
T ss_pred ---------------------------------------------------c----------------------------
Confidence 0
Q ss_pred cccccCCCCCcchHHHHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccchhhhhhHhhhhcCc
Q 001400 703 SWDKKAGNSNFSLGEAILRQRSLFPESYWYWIGVGAMLGYTLLFNALFTFFLSYLNPLGKQQAVVSKKELQERDRRRKGE 782 (1085)
Q Consensus 703 ~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~w~~~g~ll~~~~~f~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 782 (1085)
. ..+
T Consensus 236 --~-----------------~~~--------------------------------------------------------- 239 (491)
T PRK10982 236 --T-----------------QRF--------------------------------------------------------- 239 (491)
T ss_pred --c-----------------ccc---------------------------------------------------------
Confidence 0 000
Q ss_pred chhHHHHhhhhcccccCCcccccCCcccccccceeeeccceeeeeccccccccccccCCeEEeeeeeEEEeCCeEEEEEc
Q 001400 783 NVVIELREYLQRSSSLNGKYFKQKGMVLPFQPLSMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVG 862 (1085)
Q Consensus 783 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G 862 (1085)
+.. . .. + .+..+.++|+++. ...+|+||||+|++||++||+|
T Consensus 240 ---------~~~--~-~~---~--------~~~~i~~~~l~~~---------------~~~~l~~vsl~i~~Ge~~~l~G 281 (491)
T PRK10982 240 ---------PDK--E-NK---P--------GEVILEVRNLTSL---------------RQPSIRDVSFDLHKGEILGIAG 281 (491)
T ss_pred ---------ccc--c-CC---C--------CCcEEEEeCcccc---------------cCcccceeeEEEeCCcEEEEec
Confidence 000 0 00 0 0012334444332 1248999999999999999999
Q ss_pred cCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCChh----cccceEEEEccCC---CCCCCCCHHHHHHHhhh--hcCCC
Q 001400 863 VSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE----TFARISGYCEQND---IHSPGLTVLESLLFSAW--LRLPS 933 (1085)
Q Consensus 863 ~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~----~~~~~~gy~~Q~~---~~~~~~tv~e~l~~~~~--~~~~~ 933 (1085)
+||||||||+++|+|..+ +.+|+|.++|.++... ..++.+||++|++ .+++.+|+.+|..+... .....
T Consensus 282 ~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (491)
T PRK10982 282 LVGAKRTDIVETLFGIRE--KSAGTITLHGKKINNHNANEAINHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKV 359 (491)
T ss_pred CCCCCHHHHHHHHcCCCc--CCccEEEECCEECCCCCHHHHHHCCCEEcCCchhhCCcccCCcHHHheehhhhhhhcccc
Confidence 999999999999999876 4689999999775421 2345689999985 35778888877433210 00000
Q ss_pred c-ccHHHHHHHHHHHHHHcCCC-cccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHH
Q 001400 934 E-IELETQRAFVEEVMELVELT-SLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTV 1011 (1085)
Q Consensus 934 ~-~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEPtsgLD~~~~~~i~~~l 1011 (1085)
. .......+.+.++++.+++. +..+.. +.+|||||||||+|||+|+.+|+||||||||+|||+.++..+++.|
T Consensus 360 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LSgGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l 434 (491)
T PRK10982 360 GLLDNSRMKSDTQWVIDSMRVKTPGHRTQ-----IGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLI 434 (491)
T ss_pred cccCcHHHHHHHHHHHHhcCccCCCcccc-----cccCCcHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHH
Confidence 1 11222345567888888884 334433 3579999999999999999999999999999999999999999999
Q ss_pred HHHHHCCceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCCC
Q 001400 1012 RNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGS 1056 (1085)
Q Consensus 1012 ~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~~ 1056 (1085)
+++.++|.|||++|||++ ++.+.||++++|++ |+++..++...
T Consensus 435 ~~l~~~~~tvi~vsHd~~-~~~~~~d~v~~l~~-g~i~~~~~~~~ 477 (491)
T PRK10982 435 AELAKKDKGIIIISSEMP-ELLGITDRILVMSN-GLVAGIVDTKT 477 (491)
T ss_pred HHHHHCCCEEEEECCChH-HHHhhCCEEEEEEC-CEEEEEEcccc
Confidence 999888999999999987 47788999999985 68887776543
|
|
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-61 Score=521.93 Aligned_cols=472 Identities=22% Similarity=0.316 Sum_probs=359.9
Q ss_pred cceeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCC--CCceeeEEEECCccCCCCCC-------CceEEEEcc
Q 001400 146 SKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGH--HLQVSGKITYNGHGFKEFVP-------PRTSAYVSQ 216 (1085)
Q Consensus 146 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~--~~~~~G~i~~~G~~~~~~~~-------~~~~~yv~Q 216 (1085)
..+.++++|||.|++||.++|+|.||||||-..+.+.|+++. ....+|+|.|+|.++-.... ...|++++|
T Consensus 21 ~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~~lr~iRG~~I~MIFQ 100 (534)
T COG4172 21 GTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASERQLRGVRGNKIGMIFQ 100 (534)
T ss_pred cceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHHHHhhhcccceEEEec
Confidence 456799999999999999999999999999999999999876 23458999999998744432 247999999
Q ss_pred CCC--CCCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCccc
Q 001400 217 QDW--QVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTC 294 (1085)
Q Consensus 217 ~d~--~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~ 294 (1085)
+|- +-|-.|+..-|.-..+++... .....+.++-++|+..|+++-
T Consensus 101 EPMtSLNPl~tIg~Qi~E~l~~Hrg~---------------------------------~~~~Ar~r~lelL~~VgI~~p 147 (534)
T COG4172 101 EPMTSLNPLHTIGKQLAEVLRLHRGL---------------------------------SRAAARARALELLELVGIPEP 147 (534)
T ss_pred ccccccCcHhHHHHHHHHHHHHHhcc---------------------------------cHHHHHHHHHHHHHHcCCCch
Confidence 983 567678877776555543211 112234568889999999876
Q ss_pred ccccccCcccccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhh
Q 001400 295 ADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYEL 374 (1085)
Q Consensus 295 ~dt~vg~~~~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~ 374 (1085)
...+ +.++.+|||||||||.||.||+.+|++|+-||||++||...+.+|.+.|+++..++ +..++.|+|+..-+-.+
T Consensus 148 ~~rl--~~yPHeLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~-gMa~lfITHDL~iVr~~ 224 (534)
T COG4172 148 EKRL--DAYPHELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAEL-GMAILFITHDLGIVRKF 224 (534)
T ss_pred hhhh--hhCCcccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHh-CcEEEEEeccHHHHHHh
Confidence 5443 46788999999999999999999999999999999999999999999999998876 45666799999999999
Q ss_pred cCeEEEecCCeEEEecChhhHHHHHHhCCCCCCCCCChhHHHHhhcCcccccccccCCCCCCCCCChhHHHHHHHhCccc
Q 001400 375 FDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVTSKKDQEQYWSNPYLPYRYISPGKFAEAFHSYHTG 454 (1085)
Q Consensus 375 ~D~ii~L~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (1085)
+|+|+||.+|+++++|+.+.+.. .|.+ ||+.
T Consensus 225 ADrV~VM~~G~ivE~~~t~~lF~--------~PqH-------------------------pYTr---------------- 255 (534)
T COG4172 225 ADRVYVMQHGEIVETGTTETLFA--------APQH-------------------------PYTR---------------- 255 (534)
T ss_pred hhhEEEEeccEEeecCcHHHHhh--------CCCC-------------------------hHHH----------------
Confidence 99999999999999998766531 1111 1100
Q ss_pred cchhhhhcCcccccCCCcccccCCCCCCcHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcc
Q 001400 455 KNLSEELAVPFDRRFNHPAALSTSKYGEKRSELLKTSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHKTI 534 (1085)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~ali~g~vf~~~~~~~~~~ 534 (1085)
.+.+. .|. ..+
T Consensus 256 -~Ll~a--eP~----g~~-------------------------------------------------------------- 266 (534)
T COG4172 256 -KLLAA--EPS----GDP-------------------------------------------------------------- 266 (534)
T ss_pred -HHHhc--CCC----CCC--------------------------------------------------------------
Confidence 00000 000 000
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCcccchHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccc
Q 001400 535 DDGGLYLGALYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIPTSLIESGFWVAVTYYVIGYDP 614 (1085)
Q Consensus 535 ~~~~~~~g~lf~~l~~~~~~~~~~~~~~~~~~~v~~k~r~~~~y~~~ay~l~~~~~~iP~~~i~~~i~~~i~Y~~~g~~~ 614 (1085)
T Consensus 267 -------------------------------------------------------------------------------- 266 (534)
T COG4172 267 -------------------------------------------------------------------------------- 266 (534)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhHcccCHHHHHHHHHHHHHHHHHHhhccccCCCchhHHHHhHhhcHHHHHHHHH
Q 001400 615 NVVRFSRQLLLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSFAMLVVMALGGFIISRDSIPKWWIWGFWVSPLMYAQNAA 694 (1085)
Q Consensus 615 ~~~~f~~~~l~~~~~~~~~~~l~~~i~~~~~~~~va~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~w~~~isp~~y~~~a~ 694 (1085)
T Consensus 267 -------------------------------------------------------------------------------- 266 (534)
T COG4172 267 -------------------------------------------------------------------------------- 266 (534)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhhhcCCcccccCCCCCcchHHHHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccchhhhhh
Q 001400 695 SVNEFLGHSWDKKAGNSNFSLGEAILRQRSLFPESYWYWIGVGAMLGYTLLFNALFTFFLSYLNPLGKQQAVVSKKELQE 774 (1085)
Q Consensus 695 ~~nef~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~w~~~g~ll~~~~~f~~l~~~~l~~~~~~~~~~~~~~~~~~~~ 774 (1085)
T Consensus 267 -------------------------------------------------------------------------------- 266 (534)
T COG4172 267 -------------------------------------------------------------------------------- 266 (534)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhhhhcCcchhHHHHhhhhcccccCCcccccCCcccccccceeeeccceeeeeccccccccccccCCeEEeeeeeEEEeC
Q 001400 775 RDRRRKGENVVIELREYLQRSSSLNGKYFKQKGMVLPFQPLSMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRP 854 (1085)
Q Consensus 775 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~L~~vs~~i~~ 854 (1085)
.+ .+ +-.|.-+..+++.-..+....+- .-..+...++++||+++++
T Consensus 267 -------------------------~p-~~------~~~~~ll~~~~v~v~f~i~~g~~--~r~~~~~~AVd~isl~L~~ 312 (534)
T COG4172 267 -------------------------PP-LP------EDAPVLLEVEDLRVWFPIKGGFL--RRTVDHLRAVDGISLTLRR 312 (534)
T ss_pred -------------------------CC-CC------CCCCceEEecceEEEEecCCccc--cccchheEEeccceeEecC
Confidence 00 00 00001111111111111110000 0011346789999999999
Q ss_pred CeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCCh------hcccceEEEEccCCC--CCCCCCHHHHHHHh
Q 001400 855 GVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ------ETFARISGYCEQNDI--HSPGLTVLESLLFS 926 (1085)
Q Consensus 855 Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~------~~~~~~~gy~~Q~~~--~~~~~tv~e~l~~~ 926 (1085)
||.+||||.||||||||-.+|.++..+ +|+|.++|.++.. ...++.+-.|||+|. +.|.+||.+-+.-+
T Consensus 313 gqTlGlVGESGSGKsTlG~allrL~~s---~G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EG 389 (534)
T COG4172 313 GQTLGLVGESGSGKSTLGLALLRLIPS---QGEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEG 389 (534)
T ss_pred CCeEEEEecCCCCcchHHHHHHhhcCc---CceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhh
Confidence 999999999999999999999998753 5999999998753 235678899999985 57999999998877
Q ss_pred hhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHH
Q 001400 927 AWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAI 1006 (1085)
Q Consensus 927 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEPtsgLD~~~~~~ 1006 (1085)
.....+ ..+..++++++.++|+.+||.+-.- ...| .++|||||||++|||||+.+|++++||||||+||-.-+.+
T Consensus 390 L~vh~~-~ls~~eR~~rv~~aL~EVGLDp~~r--~RYP--hEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQ 464 (534)
T COG4172 390 LRVHEP-KLSAAERDQRVIEALEEVGLDPATR--NRYP--HEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQ 464 (534)
T ss_pred hhhcCC-CCCHHHHHHHHHHHHHHcCCChhHh--hcCC--cccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHH
Confidence 665544 4567788899999999999976432 2233 5799999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH-CCceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCC
Q 001400 1007 VMRTVRNIVN-TGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1085)
Q Consensus 1007 i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~ 1055 (1085)
|.++++++.+ .|.+-++||||+.. +...||+++||++ |+|++.||..
T Consensus 465 vv~LLr~LQ~k~~LsYLFISHDL~V-vrAl~~~viVm~~-GkiVE~G~~~ 512 (534)
T COG4172 465 VLDLLRDLQQKHGLSYLFISHDLAV-VRALCHRVIVMRD-GKIVEQGPTE 512 (534)
T ss_pred HHHHHHHHHHHhCCeEEEEeccHHH-HHHhhceEEEEeC-CEEeeeCCHH
Confidence 9999999975 59999999999864 6778999999985 7999999964
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-62 Score=585.46 Aligned_cols=446 Identities=19% Similarity=0.267 Sum_probs=322.7
Q ss_pred eecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCC---CCceEEEEccCCCC--C--
Q 001400 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV---PPRTSAYVSQQDWQ--V-- 221 (1085)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~---~~~~~~yv~Q~d~~--~-- 221 (1085)
.+|+|+|++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++.. +
T Consensus 17 ~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~---~G~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 93 (490)
T PRK10938 17 KTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLL---SGERQSQFSHITRLSFEQLQKLVSDEWQRNNTDMLSP 93 (490)
T ss_pred eecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCC---CceEEECCcccccCCHHHHHHHhceeccCcchhhccc
Confidence 5999999999999999999999999999999999998876 999999997654322 12458999998542 1
Q ss_pred ----CCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccc
Q 001400 222 ----AEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADT 297 (1085)
Q Consensus 222 ----~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 297 (1085)
..+||+|++.+.. ....+++++++.+||++..+.
T Consensus 94 ~~~~~~~~~~~~~~~~~------------------------------------------~~~~~~~~~l~~~~l~~~~~~ 131 (490)
T PRK10938 94 GEDDTGRTTAEIIQDEV------------------------------------------KDPARCEQLAQQFGITALLDR 131 (490)
T ss_pred chhhccccHHHhcccch------------------------------------------hHHHHHHHHHHHcCCHhhhhC
Confidence 1467777764310 001236778999999887776
Q ss_pred cccCcccccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCe
Q 001400 298 LVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDD 377 (1085)
Q Consensus 298 ~vg~~~~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ 377 (1085)
.++ .|||||||||+||+||+.+|++|+|||||+|||+.++.++.+.|+++++. +++|+.++|+..++.++||+
T Consensus 132 ~~~-----~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~--g~tvii~tH~~~~~~~~~d~ 204 (490)
T PRK10938 132 RFK-----YLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQS--GITLVLVLNRFDEIPDFVQF 204 (490)
T ss_pred Ccc-----cCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhc--CCeEEEEeCCHHHHHhhCCE
Confidence 654 69999999999999999999999999999999999999999999998753 44566688999999999999
Q ss_pred EEEecCCeEEEecChhhHHHHHHhCCCCCCCCCChhHHHHhhcCcccccccccCCCCCCCCCChhHHHHHHHhCccccch
Q 001400 378 VILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVTSKKDQEQYWSNPYLPYRYISPGKFAEAFHSYHTGKNL 457 (1085)
Q Consensus 378 ii~L~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (1085)
|++|++|++++.|+++++.+- +.+..+..
T Consensus 205 v~~l~~G~i~~~~~~~~~~~~---------------~~~~~~~~------------------------------------ 233 (490)
T PRK10938 205 AGVLADCTLAETGEREEILQQ---------------ALVAQLAH------------------------------------ 233 (490)
T ss_pred EEEEECCEEEEeCCHHHHhcc---------------hhhhhhhh------------------------------------
Confidence 999999999999876543210 00000000
Q ss_pred hhhhcCcccccCCCcccccCCCCCCcHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccccc
Q 001400 458 SEELAVPFDRRFNHPAALSTSKYGEKRSELLKTSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHKTIDDG 537 (1085)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~ali~g~vf~~~~~~~~~~~~~ 537 (1085)
. .....
T Consensus 234 ------------------------------------~-------------------------------------~~~~~- 239 (490)
T PRK10938 234 ------------------------------------S-------------------------------------EQLEG- 239 (490)
T ss_pred ------------------------------------h-------------------------------------hccCc-
Confidence 0 00000
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCcccchHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccHH
Q 001400 538 GLYLGALYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIPTSLIESGFWVAVTYYVIGYDPNVV 617 (1085)
Q Consensus 538 ~~~~g~lf~~l~~~~~~~~~~~~~~~~~~~v~~k~r~~~~y~~~ay~l~~~~~~iP~~~i~~~i~~~i~Y~~~g~~~~~~ 617 (1085)
T Consensus 240 -------------------------------------------------------------------------------- 239 (490)
T PRK10938 240 -------------------------------------------------------------------------------- 239 (490)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHcccCHHHHHHHHHHHHHHHHHHhhccccCCCchhHHHHhHhhcHHHHHHHHHHHh
Q 001400 618 RFSRQLLLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSFAMLVVMALGGFIISRDSIPKWWIWGFWVSPLMYAQNAASVN 697 (1085)
Q Consensus 618 ~f~~~~l~~~~~~~~~~~l~~~i~~~~~~~~va~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~w~~~isp~~y~~~a~~~n 697 (1085)
. ..|
T Consensus 240 ---------------------------------------------------~---~~~---------------------- 243 (490)
T PRK10938 240 ---------------------------------------------------V---QLP---------------------- 243 (490)
T ss_pred ---------------------------------------------------c---ccC----------------------
Confidence 0 000
Q ss_pred hhcCCcccccCCCCCcchHHHHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccchhhhhhHhh
Q 001400 698 EFLGHSWDKKAGNSNFSLGEAILRQRSLFPESYWYWIGVGAMLGYTLLFNALFTFFLSYLNPLGKQQAVVSKKELQERDR 777 (1085)
Q Consensus 698 ef~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~w~~~g~ll~~~~~f~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 777 (1085)
. ..
T Consensus 244 ------------~--------------------------------------------------------~~--------- 246 (490)
T PRK10938 244 ------------E--------------------------------------------------------PD--------- 246 (490)
T ss_pred ------------c--------------------------------------------------------cc---------
Confidence 0 00
Q ss_pred hhcCcchhHHHHhhhhcccccCCcccccCCcccccccceeeeccceeeeeccccccccccccCCeEEeeeeeEEEeCCeE
Q 001400 778 RRKGENVVIELREYLQRSSSLNGKYFKQKGMVLPFQPLSMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVL 857 (1085)
Q Consensus 778 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~ 857 (1085)
+. . ... . .+. ....+.++|+++. +++..+|+|+||+|++||+
T Consensus 247 ----~~-~------~~~----~---~~~-------~~~~l~~~~l~~~-------------~~~~~il~~vsl~i~~Ge~ 288 (490)
T PRK10938 247 ----EP-S------ARH----A---LPA-------NEPRIVLNNGVVS-------------YNDRPILHNLSWQVNPGEH 288 (490)
T ss_pred ----cc-c------ccc----c---cCC-------CCceEEEeceEEE-------------ECCeeEEeeceEEEcCCCE
Confidence 00 0 000 0 000 0011334444333 2345699999999999999
Q ss_pred EEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCCh----hcccceEEEEccCCCCCC--CCCHHHHHHHhhhh--
Q 001400 858 TALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ----ETFARISGYCEQNDIHSP--GLTVLESLLFSAWL-- 929 (1085)
Q Consensus 858 ~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~----~~~~~~~gy~~Q~~~~~~--~~tv~e~l~~~~~~-- 929 (1085)
+||+||||||||||+++|+|..+. ..+|+|+++|.+... ...++.+||++|++.+++ ..++.+++.+....
T Consensus 289 ~~i~G~NGsGKSTLl~~l~G~~~~-~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~ 367 (490)
T PRK10938 289 WQIVGPNGAGKSTLLSLITGDHPQ-GYSNDLTLFGRRRGSGETIWDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSI 367 (490)
T ss_pred EEEECCCCCCHHHHHHHHcCCCCc-ccCCeEEEecccCCCCCCHHHHHhhceEECHHHHhhcccCCcHHHHHHhcccccc
Confidence 999999999999999999996531 147999999976421 123567999999876543 35676666543211
Q ss_pred cCCCcccHHHHHHHHHHHHHHcCCCc-ccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHH
Q 001400 930 RLPSEIELETQRAFVEEVMELVELTS-LSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVM 1008 (1085)
Q Consensus 930 ~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEPtsgLD~~~~~~i~ 1008 (1085)
....... ....+.++++++.+++.+ ..+..+ ..|||||||||+|||||+.+|+||||||||+|||+.++..++
T Consensus 368 ~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~ 441 (490)
T PRK10938 368 GIYQAVS-DRQQKLAQQWLDILGIDKRTADAPF-----HSLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVR 441 (490)
T ss_pred ccccCCC-HHHHHHHHHHHHHcCCchhhccCch-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHH
Confidence 0111111 223456788999999976 555443 579999999999999999999999999999999999999999
Q ss_pred HHHHHHHHCC-ceEEEEecCccHHHHH-hcCEEEEEecCcEEEEe
Q 001400 1009 RTVRNIVNTG-RTIVCTIHQPSIDIFE-SFDELLFMKRGGELIYA 1051 (1085)
Q Consensus 1009 ~~l~~~~~~g-~tvi~~~H~~~~~~~~-~~d~il~l~~gG~~~~~ 1051 (1085)
+.|++++++| .|||++|||++ ++.+ .+|++++|++ |++++.
T Consensus 442 ~~L~~l~~~~~~tviivsHd~~-~~~~~~~d~v~~l~~-G~i~~~ 484 (490)
T PRK10938 442 RFVDVLISEGETQLLFVSHHAE-DAPACITHRLEFVPD-GDIYRY 484 (490)
T ss_pred HHHHHHHhcCCcEEEEEecchh-hhhhhhheeEEEecC-CceEEe
Confidence 9999998776 46999999986 3555 4899999986 566554
|
|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-60 Score=573.81 Aligned_cols=191 Identities=19% Similarity=0.253 Sum_probs=155.2
Q ss_pred CCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCChhcccceEEEEccCC-CCCCCCC
Q 001400 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQND-IHSPGLT 918 (1085)
Q Consensus 840 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gy~~Q~~-~~~~~~t 918 (1085)
+++.+|+||||+|++||++||+|+||||||||+++|+|... +.+|+|.+++. ..+||++|++ .+++.+|
T Consensus 335 ~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~--p~~G~i~~~~~--------~~i~~v~q~~~~~~~~~t 404 (556)
T PRK11819 335 GDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQ--PDSGTIKIGET--------VKLAYVDQSRDALDPNKT 404 (556)
T ss_pred CCeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCc--------eEEEEEeCchhhcCCCCC
Confidence 45679999999999999999999999999999999999866 46899998542 1589999986 6778899
Q ss_pred HHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCc-ccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCC
Q 001400 919 VLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTS-LSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTS 997 (1085)
Q Consensus 919 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEPts 997 (1085)
|+|++.+....... ... .....++++.+++.+ ..+.. +..||||||||++|||||+.+|++|||||||+
T Consensus 405 v~e~l~~~~~~~~~---~~~--~~~~~~~l~~~~l~~~~~~~~-----~~~LSgG~~qrv~la~al~~~p~lllLDEPt~ 474 (556)
T PRK11819 405 VWEEISGGLDIIKV---GNR--EIPSRAYVGRFNFKGGDQQKK-----VGVLSGGERNRLHLAKTLKQGGNVLLLDEPTN 474 (556)
T ss_pred HHHHHHhhcccccc---ccc--HHHHHHHHHhCCCChhHhcCc-----hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCC
Confidence 99999876422111 111 122456888888853 33443 35799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEecCcEEE-EecCC
Q 001400 998 GLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELI-YAGPL 1054 (1085)
Q Consensus 998 gLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~-~~g~~ 1054 (1085)
|||+.++..+++.|+++ . .|||++|||++ .+...||++++|++||+++ +.|+.
T Consensus 475 ~LD~~~~~~l~~~l~~~--~-~tvi~vtHd~~-~~~~~~d~i~~l~~~g~~~~~~g~~ 528 (556)
T PRK11819 475 DLDVETLRALEEALLEF--P-GCAVVISHDRW-FLDRIATHILAFEGDSQVEWFEGNF 528 (556)
T ss_pred CCCHHHHHHHHHHHHhC--C-CeEEEEECCHH-HHHHhCCEEEEEECCCeEEEecCCH
Confidence 99999999999999986 2 48999999986 4778899999998767776 55543
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-59 Score=568.75 Aligned_cols=188 Identities=19% Similarity=0.262 Sum_probs=154.6
Q ss_pred cCCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCChhcccceEEEEccCCC--CCCC
Q 001400 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDI--HSPG 916 (1085)
Q Consensus 839 ~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gy~~Q~~~--~~~~ 916 (1085)
+++..+|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|. +.+||++|++. +.+.
T Consensus 329 ~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~--p~~G~i~~~~~--------~~i~~~~q~~~~~~~~~ 398 (530)
T PRK15064 329 FDNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELE--PDSGTVKWSEN--------ANIGYYAQDHAYDFEND 398 (530)
T ss_pred eCCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCc--------eEEEEEcccccccCCCC
Confidence 345579999999999999999999999999999999999865 46899999873 46899999864 4567
Q ss_pred CCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCC-cccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCC
Q 001400 917 LTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELT-SLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEP 995 (1085)
Q Consensus 917 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEP 995 (1085)
+|++|++.+.. ... ...+.++++++.+++. +..+.. +..||||||||++|||+|+.+|+|||||||
T Consensus 399 ~t~~~~~~~~~---~~~-----~~~~~~~~~l~~~~l~~~~~~~~-----~~~LSgGq~qrv~la~al~~~p~lllLDEP 465 (530)
T PRK15064 399 LTLFDWMSQWR---QEG-----DDEQAVRGTLGRLLFSQDDIKKS-----VKVLSGGEKGRMLFGKLMMQKPNVLVMDEP 465 (530)
T ss_pred CcHHHHHHHhc---cCC-----ccHHHHHHHHHHcCCChhHhcCc-----ccccCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 89999986421 111 1124467889999884 444443 357999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEecCcEEE-EecCC
Q 001400 996 TSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELI-YAGPL 1054 (1085)
Q Consensus 996 tsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~-~~g~~ 1054 (1085)
|+|||+.++..+++.|+++ +.|||++|||++ .+...||++++|++ |+++ +.|+.
T Consensus 466 t~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~-~~~~~~d~i~~l~~-g~i~~~~g~~ 520 (530)
T PRK15064 466 TNHMDMESIESLNMALEKY---EGTLIFVSHDRE-FVSSLATRIIEITP-DGVVDFSGTY 520 (530)
T ss_pred CCCCCHHHHHHHHHHHHHC---CCEEEEEeCCHH-HHHHhCCEEEEEEC-CeEEEcCCCH
Confidence 9999999999999999986 459999999986 47778999999986 5665 77753
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-59 Score=567.70 Aligned_cols=191 Identities=19% Similarity=0.248 Sum_probs=154.8
Q ss_pred CCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCChhcccceEEEEccCC-CCCCCCC
Q 001400 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQND-IHSPGLT 918 (1085)
Q Consensus 840 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gy~~Q~~-~~~~~~t 918 (1085)
++..+|+||||+|++|+++||+|+||||||||+++|+|... +.+|+|.+++. ..+||++|++ .+++.+|
T Consensus 333 ~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~--p~~G~i~~~~~--------~~i~~v~q~~~~~~~~~t 402 (552)
T TIGR03719 333 GDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQ--PDSGTIKIGET--------VKLAYVDQSRDALDPNKT 402 (552)
T ss_pred CCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--CCCeEEEECCc--------eEEEEEeCCccccCCCCc
Confidence 45679999999999999999999999999999999999865 46899998542 1589999986 4778899
Q ss_pred HHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCc-ccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCC
Q 001400 919 VLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTS-LSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTS 997 (1085)
Q Consensus 919 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEPts 997 (1085)
++|++.+....... ... .....++++.+++.+ ..+.. +..|||||||||+|||+|+.+|++|||||||+
T Consensus 403 v~e~l~~~~~~~~~---~~~--~~~~~~~l~~~~l~~~~~~~~-----~~~LSgGe~qrv~la~al~~~p~lllLDEPt~ 472 (552)
T TIGR03719 403 VWEEISGGLDIIQL---GKR--EVPSRAYVGRFNFKGSDQQKK-----VGQLSGGERNRVHLAKTLKSGGNVLLLDEPTN 472 (552)
T ss_pred HHHHHHhhcccccc---Ccc--hHHHHHHHHhCCCChhHhcCc-----hhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Confidence 99999876422111 111 122457888888853 33443 25799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEecCcEEE-EecCC
Q 001400 998 GLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELI-YAGPL 1054 (1085)
Q Consensus 998 gLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~-~~g~~ 1054 (1085)
|||+.++..+++.|+++ +.|||++|||++ .+...||++++|++||+++ +.|+.
T Consensus 473 ~LD~~~~~~l~~~l~~~---~~~viivsHd~~-~~~~~~d~i~~l~~~~~~~~~~g~~ 526 (552)
T TIGR03719 473 DLDVETLRALEEALLEF---AGCAVVISHDRW-FLDRIATHILAFEGDSHVEWFEGNY 526 (552)
T ss_pred CCCHHHHHHHHHHHHHC---CCeEEEEeCCHH-HHHHhCCEEEEEECCCeEEEeCCCH
Confidence 99999999999999987 248999999986 4777899999998767776 55543
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-57 Score=553.17 Aligned_cols=187 Identities=22% Similarity=0.343 Sum_probs=151.6
Q ss_pred cCCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCChhcccceEEEEccCC--CCCCC
Q 001400 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQND--IHSPG 916 (1085)
Q Consensus 839 ~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gy~~Q~~--~~~~~ 916 (1085)
+++..+|+|+||+|++|+++||+||||||||||+++|+|... +.+|+|.+++. ..+||++|+. .+.+.
T Consensus 322 y~~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~--p~~G~i~~~~~--------~~igy~~Q~~~~~l~~~ 391 (638)
T PRK10636 322 YGDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELA--PVSGEIGLAKG--------IKLGYFAQHQLEFLRAD 391 (638)
T ss_pred eCCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCeEEECCC--------EEEEEecCcchhhCCcc
Confidence 345679999999999999999999999999999999999876 46899998742 2589999974 34456
Q ss_pred CCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCc-ccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCC
Q 001400 917 LTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTS-LSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEP 995 (1085)
Q Consensus 917 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEP 995 (1085)
.|+.+++.. .. + ......+.++++.+++.. ..+.. +..|||||||||+||++|+.+|+|||||||
T Consensus 392 ~~~~~~~~~---~~-~-----~~~~~~~~~~L~~~~l~~~~~~~~-----~~~LSgGekqRl~La~~l~~~p~lLlLDEP 457 (638)
T PRK10636 392 ESPLQHLAR---LA-P-----QELEQKLRDYLGGFGFQGDKVTEE-----TRRFSGGEKARLVLALIVWQRPNLLLLDEP 457 (638)
T ss_pred chHHHHHHH---hC-c-----hhhHHHHHHHHHHcCCChhHhcCc-----hhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 678777531 11 1 112345678888888853 34443 357999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEecCcEEE-EecCC
Q 001400 996 TSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELI-YAGPL 1054 (1085)
Q Consensus 996 tsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~-~~g~~ 1054 (1085)
|+|||+.+...+.++|+++ +.|||+||||+. .+...||++++|++ |+++ +.|+.
T Consensus 458 t~~LD~~~~~~l~~~L~~~---~gtvi~vSHd~~-~~~~~~d~i~~l~~-G~i~~~~g~~ 512 (638)
T PRK10636 458 TNHLDLDMRQALTEALIDF---EGALVVVSHDRH-LLRSTTDDLYLVHD-GKVEPFDGDL 512 (638)
T ss_pred CCCCCHHHHHHHHHHHHHc---CCeEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEcCCCH
Confidence 9999999999999999987 349999999986 47788999999985 5665 77765
|
|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-57 Score=551.71 Aligned_cols=200 Identities=23% Similarity=0.212 Sum_probs=163.7
Q ss_pred EeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCChhcccceEEEEccCCCCCCCCCHHHHH
Q 001400 844 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLESL 923 (1085)
Q Consensus 844 ~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gy~~Q~~~~~~~~tv~e~l 923 (1085)
.|+++||+|++||++||+|+||||||||+++|+|..+ +.+|+|.++ ..+||++|+..+.+.+||+|++
T Consensus 354 ~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~--p~~G~I~~~----------~~i~y~~Q~~~~~~~~tv~e~l 421 (590)
T PRK13409 354 SLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLK--PDEGEVDPE----------LKISYKPQYIKPDYDGTVEDLL 421 (590)
T ss_pred EEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEEe----------eeEEEecccccCCCCCcHHHHH
Confidence 4889999999999999999999999999999999876 468999886 1489999998888899999999
Q ss_pred HHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHH
Q 001400 924 LFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARA 1003 (1085)
Q Consensus 924 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEPtsgLD~~~ 1003 (1085)
.+..... .. ...++++++.+++.+..+..+ ..|||||||||+|||||+.+|+||||||||+|||+.+
T Consensus 422 ~~~~~~~-----~~---~~~~~~~L~~l~l~~~~~~~~-----~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~ 488 (590)
T PRK13409 422 RSITDDL-----GS---SYYKSEIIKPLQLERLLDKNV-----KDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQ 488 (590)
T ss_pred HHHhhhc-----Ch---HHHHHHHHHHCCCHHHHhCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHH
Confidence 8642111 11 124678999999987666543 5799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHC-CceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCCCc---hHHHHHHHHhccccc
Q 001400 1004 AAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGSK---SCELIKYFEVESFMF 1072 (1085)
Q Consensus 1004 ~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~~~---~~~~~~~~~~~~g~~ 1072 (1085)
+..+++.|++++++ |.|||++|||+. .+...+|++++|+ | ++...|..... ...+-.+++.+ |+.
T Consensus 489 ~~~l~~~l~~l~~~~g~tviivsHD~~-~~~~~aDrvivl~-~-~~~~~g~~~~~~~~~~~~~~~l~~~-~i~ 557 (590)
T PRK13409 489 RLAVAKAIRRIAEEREATALVVDHDIY-MIDYISDRLMVFE-G-EPGKHGHASGPMDMREGMNRFLKEL-GIT 557 (590)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEc-C-cceeeeecCCchhHHHHHHHHHHHc-CCE
Confidence 99999999999764 899999999986 4677899999996 4 67666654332 13345566666 554
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-56 Score=553.18 Aligned_cols=192 Identities=22% Similarity=0.286 Sum_probs=153.8
Q ss_pred cCCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCChhcccceEEEEccCC-CCCCCC
Q 001400 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQND-IHSPGL 917 (1085)
Q Consensus 839 ~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gy~~Q~~-~~~~~~ 917 (1085)
+++..+|+|+||+|++|+++||+|+||||||||+++|+|... +.+|+|.+ |.+. .+||++|+. .+++.+
T Consensus 329 ~~~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~--p~~G~i~~-~~~~-------~i~y~~q~~~~l~~~~ 398 (635)
T PRK11147 329 IDGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQ--ADSGRIHC-GTKL-------EVAYFDQHRAELDPEK 398 (635)
T ss_pred ECCeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCcEEEE-CCCc-------EEEEEeCcccccCCCC
Confidence 345679999999999999999999999999999999999865 46899998 5321 489999975 577899
Q ss_pred CHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCc-ccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Q 001400 918 TVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTS-LSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPT 996 (1085)
Q Consensus 918 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEPt 996 (1085)
||.|++.+..... ... .....+.++++.+++.. ..+.. +..|||||||||+||++|+.+|++|||||||
T Consensus 399 tv~e~l~~~~~~~---~~~--~~~~~~~~~l~~~~l~~~~~~~~-----~~~LSgGekqRl~la~al~~~p~lLlLDEPt 468 (635)
T PRK11147 399 TVMDNLAEGKQEV---MVN--GRPRHVLGYLQDFLFHPKRAMTP-----VKALSGGERNRLLLARLFLKPSNLLILDEPT 468 (635)
T ss_pred CHHHHHHhhcccc---ccc--chHHHHHHHHHhcCCCHHHHhCh-----hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 9999998753211 001 11234667788887752 33443 3579999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEe-cCcEEEEecCC
Q 001400 997 SGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMK-RGGELIYAGPL 1054 (1085)
Q Consensus 997 sgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~-~gG~~~~~g~~ 1054 (1085)
+|||+.+...+.++|+++ +.|||+||||++ .+...||++++|. +|....|.|+.
T Consensus 469 ~~LD~~~~~~l~~~l~~~---~~tvi~vSHd~~-~~~~~~d~i~~l~~~g~i~~~~g~y 523 (635)
T PRK11147 469 NDLDVETLELLEELLDSY---QGTVLLVSHDRQ-FVDNTVTECWIFEGNGKIGRYVGGY 523 (635)
T ss_pred CCCCHHHHHHHHHHHHhC---CCeEEEEECCHH-HHHHhcCEEEEEeCCCeEEEccCCH
Confidence 999999999999999885 469999999986 4677899999997 55445566654
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-56 Score=510.73 Aligned_cols=454 Identities=24% Similarity=0.369 Sum_probs=347.1
Q ss_pred cceeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCC----CceEEEEccCCCCC
Q 001400 146 SKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP----PRTSAYVSQQDWQV 221 (1085)
Q Consensus 146 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~----~~~~~yv~Q~d~~~ 221 (1085)
...++|+|||+.++|||+++|+|.||||||||+|+|+|.++|+ +|+|.++|.+..-..+ ..-|+.|.|+..++
T Consensus 19 ggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~---~G~I~~~G~~~~~~sp~~A~~~GI~~V~QEl~L~ 95 (500)
T COG1129 19 GGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPD---SGEILIDGKPVAFSSPRDALAAGIATVHQELSLV 95 (500)
T ss_pred CCceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCC---CceEEECCEEccCCCHHHHHhCCcEEEeechhcc
Confidence 3467999999999999999999999999999999999999887 9999999998765443 25689999999999
Q ss_pred CCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccC
Q 001400 222 AEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGD 301 (1085)
Q Consensus 222 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 301 (1085)
|+|||.|||.++....... -.+. ......+...+|+.+|+....++.||+
T Consensus 96 p~LsVaeNifLgre~~~~~---g~id---------------------------~~~m~~~A~~~l~~lg~~~~~~~~v~~ 145 (500)
T COG1129 96 PNLSVAENIFLGREPTRRF---GLID---------------------------RKAMRRRARELLARLGLDIDPDTLVGD 145 (500)
T ss_pred CCccHHHHhhcccccccCC---CccC---------------------------HHHHHHHHHHHHHHcCCCCChhhhhhh
Confidence 9999999997764432110 0000 011133477889999997557888775
Q ss_pred cccccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEe
Q 001400 302 EMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILL 381 (1085)
Q Consensus 302 ~~~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L 381 (1085)
||+||||-|.||||+..++++++||||||+|+...+..+++.++++.. .+..||.++|..+|++++||+|.||
T Consensus 146 -----LsiaqrQ~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~--~Gv~ii~ISHrl~Ei~~i~DritVl 218 (500)
T COG1129 146 -----LSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKA--QGVAIIYISHRLDEVFEIADRITVL 218 (500)
T ss_pred -----CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh--CCCEEEEEcCcHHHHHHhcCEEEEE
Confidence 999999999999999999999999999999999999999999999975 4677888999999999999999999
Q ss_pred cCCeEEEecCh-hhHHHHHHhCCCCCCCCCChhHHHHhhcCcccccccccCCCCCCCCCChhHHHHHHHhCccccchhhh
Q 001400 382 SEGQIVYQGPR-VSVLDFFASMGFSCPKRKNVADFLQEVTSKKDQEQYWSNPYLPYRYISPGKFAEAFHSYHTGKNLSEE 460 (1085)
Q Consensus 382 ~~G~iv~~G~~-~~~~~~f~~~G~~~p~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (1085)
.||+.+..++. .+. +.++..
T Consensus 219 RDG~~v~~~~~~~~~--------------------------------------------~~~~lv--------------- 239 (500)
T COG1129 219 RDGRVVGTRPTAAET--------------------------------------------SEDELV--------------- 239 (500)
T ss_pred eCCEEeeecccccCC--------------------------------------------CHHHHH---------------
Confidence 99999977652 111 000000
Q ss_pred hcCcccccCCCcccccCCCCCCcHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccccchhH
Q 001400 461 LAVPFDRRFNHPAALSTSKYGEKRSELLKTSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHKTIDDGGLY 540 (1085)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~ali~g~vf~~~~~~~~~~~~~~~~ 540 (1085)
T Consensus 240 -------------------------------------------------------------------------------- 239 (500)
T COG1129 240 -------------------------------------------------------------------------------- 239 (500)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCcccchHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccHHHHH
Q 001400 541 LGALYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIPTSLIESGFWVAVTYYVIGYDPNVVRFS 620 (1085)
Q Consensus 541 ~g~lf~~l~~~~~~~~~~~~~~~~~~~v~~k~r~~~~y~~~ay~l~~~~~~iP~~~i~~~i~~~i~Y~~~g~~~~~~~f~ 620 (1085)
-.|+|-.
T Consensus 240 ------------------------------------------------------------------~~MvGr~------- 246 (500)
T COG1129 240 ------------------------------------------------------------------RLMVGRE------- 246 (500)
T ss_pred ------------------------------------------------------------------HHhhCcc-------
Confidence 0000000
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHcccCHHHHHHHHHHHHHHHHHHhhccccCCCchhHHHHhHhhcHHHHHHHHHHHhhhc
Q 001400 621 RQLLLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSFAMLVVMALGGFIISRDSIPKWWIWGFWVSPLMYAQNAASVNEFL 700 (1085)
Q Consensus 621 ~~~l~~~~~~~~~~~l~~~i~~~~~~~~va~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~w~~~isp~~y~~~a~~~nef~ 700 (1085)
T Consensus 247 -------------------------------------------------------------------------------- 246 (500)
T COG1129 247 -------------------------------------------------------------------------------- 246 (500)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcccccCCCCCcchHHHHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccchhhhhhHhhhhc
Q 001400 701 GHSWDKKAGNSNFSLGEAILRQRSLFPESYWYWIGVGAMLGYTLLFNALFTFFLSYLNPLGKQQAVVSKKELQERDRRRK 780 (1085)
Q Consensus 701 ~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~w~~~g~ll~~~~~f~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 780 (1085)
.. ..+
T Consensus 247 ---~~------------------~~~------------------------------------------------------ 251 (500)
T COG1129 247 ---LE------------------DLF------------------------------------------------------ 251 (500)
T ss_pred ---hh------------------hhc------------------------------------------------------
Confidence 00 000
Q ss_pred CcchhHHHHhhhhcccccCCcccccCCcccccccceeeeccceeeeeccccccccccccCCeEEeeeeeEEEeCCeEEEE
Q 001400 781 GENVVIELREYLQRSSSLNGKYFKQKGMVLPFQPLSMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTAL 860 (1085)
Q Consensus 781 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al 860 (1085)
+. . . .+. ..+..+..++++ ....++||||++++||++||
T Consensus 252 -----------~~-~---~---~~~------~~~~~l~v~~l~-----------------~~~~~~dvSf~vr~GEIlGi 290 (500)
T COG1129 252 -----------PE-P---P---EEG------IGEPVLEVRNLS-----------------GGGKVRDVSFTVRAGEILGI 290 (500)
T ss_pred -----------cc-c---c---ccC------CCCcEEEEecCC-----------------CCCceeCceeEEeCCcEEEE
Confidence 00 0 0 000 001112222211 11146799999999999999
Q ss_pred EccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCCh----hcccceEEEEccC---CCCCCCCCHHHHHHHhhhhcCC-
Q 001400 861 VGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ----ETFARISGYCEQN---DIHSPGLTVLESLLFSAWLRLP- 932 (1085)
Q Consensus 861 ~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~----~~~~~~~gy~~Q~---~~~~~~~tv~e~l~~~~~~~~~- 932 (1085)
.|-=|||+|-|+++|.|... ...|+|.++|.+... ...+..++||+.+ ..+++.+++.+|+.+....+..
T Consensus 291 aGLvGaGRTEl~~~lfG~~~--~~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~ 368 (500)
T COG1129 291 AGLVGAGRTELARALFGARP--ASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSR 368 (500)
T ss_pred eccccCCHHHHHHHHhCCCc--CCCceEEECCEEccCCCHHHHHHcCCEeCCcccccCcCcCCCcHHHheehHhhhhhcc
Confidence 99999999999999999654 458999999997642 3456679999987 4578899999999877322211
Q ss_pred C-cccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHH
Q 001400 933 S-EIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTV 1011 (1085)
Q Consensus 933 ~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEPtsgLD~~~~~~i~~~l 1011 (1085)
. -.+....++.+++..+.+++..-... ..+..||||++||+.|||.|..+|+||||||||.|+|.-++..|.++|
T Consensus 369 ~~~i~~~~e~~~~~~~~~~l~Ik~~s~~----~~v~~LSGGNQQKVvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li 444 (500)
T COG1129 369 RGLIDRRKERALAERYIRRLRIKTPSPE----QPIGTLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLI 444 (500)
T ss_pred ccccChHHHHHHHHHHHHhcCcccCCcc----chhhcCCchhhhhHHHHHHHhcCCCEEEECCCCcCcccchHHHHHHHH
Confidence 1 24455566778888888887532211 124579999999999999999999999999999999999999999999
Q ss_pred HHHHHCCceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCC
Q 001400 1012 RNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1085)
Q Consensus 1012 ~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~ 1055 (1085)
++++++|.+||++|-++. ++...||||+||+ +|+++..=+.+
T Consensus 445 ~~lA~~G~ail~iSSElp-Ell~~~DRIlVm~-~Gri~~e~~~~ 486 (500)
T COG1129 445 RELAAEGKAILMISSELP-ELLGLSDRILVMR-EGRIVGELDRE 486 (500)
T ss_pred HHHHHCCCEEEEEeCChH-HHHhhCCEEEEEE-CCEEEEEeccc
Confidence 999999999999999986 7999999999998 47887654444
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-54 Score=505.51 Aligned_cols=219 Identities=26% Similarity=0.298 Sum_probs=172.0
Q ss_pred ceeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCCCceEEEEccCCCCCCCCCH
Q 001400 147 KLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTV 226 (1085)
Q Consensus 147 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV 226 (1085)
.+++|+|+|+.+.+|+.++|+|+|||||||||++|+|.+.|+ +|+|...+ .-+++|++|++...+..||
T Consensus 15 ~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~---~G~i~~~~--------~~~v~~l~Q~~~~~~~~tv 83 (530)
T COG0488 15 DRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPD---SGEVTRPK--------GLRVGYLSQEPPLDPEKTV 83 (530)
T ss_pred CceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCC---CCeEeecC--------CceEEEeCCCCCcCCCccH
Confidence 457999999999999999999999999999999999999876 99998764 2369999999998888999
Q ss_pred HHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCc---hHHHHHHH-hhhcCcchhHHHHHHHHHhCCcccccccccCc
Q 001400 227 RETLDFAGQCQGVGSKYDMITELARREKIAGIKPDE---DLDIFMKS-FALGGQKTSLVVEYIMKILGLDTCADTLVGDE 302 (1085)
Q Consensus 227 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~---d~~~~~~~-~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 302 (1085)
.+.+.-+.. ..++...+..... ...+++ ..+.+... ..++++..+.+++.+|..||++.. ++.++
T Consensus 84 ~~~v~~~~~-----~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~-~~~~~-- 152 (530)
T COG0488 84 LDYVIEGFG-----ELRELLAELEEAY---ALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE-DRPVS-- 152 (530)
T ss_pred HHHHHhhhH-----HHHHHHHHHHHHH---HhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc-cCchh--
Confidence 999976532 1112221111111 111111 11111111 235567788899999999999887 66665
Q ss_pred ccccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEec
Q 001400 303 MLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLS 382 (1085)
Q Consensus 303 ~~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~ 382 (1085)
.||||||.||+||++|+.+|++|+|||||++||..+..++-+.|++. .+ ++|.++|+.....+.|++|+-++
T Consensus 153 ---~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~----~g-tviiVSHDR~FLd~V~t~I~~ld 224 (530)
T COG0488 153 ---SLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY----PG-TVIVVSHDRYFLDNVATHILELD 224 (530)
T ss_pred ---hcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC----CC-cEEEEeCCHHHHHHHhhheEEec
Confidence 59999999999999999999999999999999999999999999853 34 56668999999999999999999
Q ss_pred CCeEE-EecChhhH
Q 001400 383 EGQIV-YQGPRVSV 395 (1085)
Q Consensus 383 ~G~iv-~~G~~~~~ 395 (1085)
.|++. |.|..+..
T Consensus 225 ~g~l~~y~Gny~~~ 238 (530)
T COG0488 225 RGKLTPYKGNYSSY 238 (530)
T ss_pred CCceeEecCCHHHH
Confidence 99875 66765544
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-53 Score=521.77 Aligned_cols=185 Identities=22% Similarity=0.312 Sum_probs=146.1
Q ss_pred eEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCChhcccceEEEEccCCCCCCCCCHHH
Q 001400 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLE 921 (1085)
Q Consensus 842 ~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gy~~Q~~~~~~~~tv~e 921 (1085)
..+|+|+||+|++|++++|+||||||||||+++|+|... +.+|+|.+++. ..+||++|++. +.+++.+
T Consensus 522 ~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~--p~~G~I~~~~~--------~~igyv~Q~~~--~~l~~~~ 589 (718)
T PLN03073 522 PLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQ--PSSGTVFRSAK--------VRMAVFSQHHV--DGLDLSS 589 (718)
T ss_pred CeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCceEEECCc--------eeEEEEecccc--ccCCcch
Confidence 469999999999999999999999999999999999866 46899998752 35899999752 3455666
Q ss_pred HHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCc-ccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCC
Q 001400 922 SLLFSAWLRLPSEIELETQRAFVEEVMELVELTS-LSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLD 1000 (1085)
Q Consensus 922 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEPtsgLD 1000 (1085)
+..+......+ ... .+.+.++++.+++.+ ..+.. +..|||||||||+|||+|+.+|++|||||||+|||
T Consensus 590 ~~~~~~~~~~~-~~~----~~~i~~~L~~~gl~~~~~~~~-----~~~LSgGqkqRvaLAraL~~~p~lLLLDEPT~~LD 659 (718)
T PLN03073 590 NPLLYMMRCFP-GVP----EQKLRAHLGSFGVTGNLALQP-----MYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLD 659 (718)
T ss_pred hHHHHHHHhcC-CCC----HHHHHHHHHHCCCChHHhcCC-----ccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCC
Confidence 54322111111 111 234678899998863 33333 35799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEecCcEEE-EecC
Q 001400 1001 ARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELI-YAGP 1053 (1085)
Q Consensus 1001 ~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~-~~g~ 1053 (1085)
+.+...+++.++++ +.|||++|||+. .+...||++++|.+ |+++ +.|+
T Consensus 660 ~~s~~~l~~~L~~~---~gtvIivSHd~~-~i~~~~drv~~l~~-G~i~~~~g~ 708 (718)
T PLN03073 660 LDAVEALIQGLVLF---QGGVLMVSHDEH-LISGSVDELWVVSE-GKVTPFHGT 708 (718)
T ss_pred HHHHHHHHHHHHHc---CCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEeCCC
Confidence 99999999888774 349999999986 47778999999985 6776 6665
|
|
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-51 Score=456.81 Aligned_cols=458 Identities=21% Similarity=0.321 Sum_probs=350.6
Q ss_pred ceeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCCC----ceEEEEccCCCCCC
Q 001400 147 KLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPP----RTSAYVSQQDWQVA 222 (1085)
Q Consensus 147 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~~----~~~~yv~Q~d~~~~ 222 (1085)
...+++|||+.|++||+.+|+|.||||||||+++|.|.+.|+ +|+|.++|+++.-..|. .-||+|.||..+++
T Consensus 16 ~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~---~GeI~v~G~~v~~~sP~dA~~~GIGMVhQHF~Lv~ 92 (501)
T COG3845 16 GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPD---SGEIRVDGKEVRIKSPRDAIRLGIGMVHQHFMLVP 92 (501)
T ss_pred CEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCC---cceEEECCEEeccCCHHHHHHcCCcEEeecccccc
Confidence 567999999999999999999999999999999999999987 99999999987654442 46899999999999
Q ss_pred CCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCc
Q 001400 223 EMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDE 302 (1085)
Q Consensus 223 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 302 (1085)
++||.|||..+..-.. +.+.+ -.....+++++.+.+||+-..|..|++
T Consensus 93 ~lTV~ENiiLg~e~~~-~~~~~------------------------------~~~~~~~i~~l~~~yGl~vdp~~~V~d- 140 (501)
T COG3845 93 TLTVAENIILGLEPSK-GGLID------------------------------RRQARARIKELSERYGLPVDPDAKVAD- 140 (501)
T ss_pred ccchhhhhhhcCcccc-ccccC------------------------------HHHHHHHHHHHHHHhCCCCCccceeec-
Confidence 9999999988653210 00000 011234588899999999988888875
Q ss_pred ccccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEec
Q 001400 303 MLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLS 382 (1085)
Q Consensus 303 ~~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~ 382 (1085)
||=||||||.|-++|+.+|++|+|||||+-|-+....++++.|++++.. +.+||.++|-..|+.+++|++.||.
T Consensus 141 ----LsVG~qQRVEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~--G~tIi~ITHKL~Ev~~iaDrvTVLR 214 (501)
T COG3845 141 ----LSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAE--GKTIIFITHKLKEVMAIADRVTVLR 214 (501)
T ss_pred ----CCcchhHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHC--CCEEEEEeccHHHHHHhhCeeEEEe
Confidence 9999999999999999999999999999999999999999999999863 4566669999999999999999999
Q ss_pred CCeEEEecChhhHHHHHHhCCCCCCCCCChhHHHHhhcCcccccccccCCCCCCCCCChhHHHHHHHhCccccchhhhhc
Q 001400 383 EGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVTSKKDQEQYWSNPYLPYRYISPGKFAEAFHSYHTGKNLSEELA 462 (1085)
Q Consensus 383 ~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (1085)
.|+++-.-++ . ++ .+.+++++.
T Consensus 215 ~Gkvvgt~~~--~--------------~~---------------------------~t~~ela~l--------------- 236 (501)
T COG3845 215 RGKVVGTVDP--V--------------AE---------------------------TTEEELAEL--------------- 236 (501)
T ss_pred CCeEEeeecC--C--------------CC---------------------------CCHHHHHHH---------------
Confidence 9998643220 0 00 000000000
Q ss_pred CcccccCCCcccccCCCCCCcHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccccchhHHH
Q 001400 463 VPFDRRFNHPAALSTSKYGEKRSELLKTSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHKTIDDGGLYLG 542 (1085)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~ali~g~vf~~~~~~~~~~~~~~~~~g 542 (1085)
T Consensus 237 -------------------------------------------------------------------------------- 236 (501)
T COG3845 237 -------------------------------------------------------------------------------- 236 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCcccchHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccHHHHHHH
Q 001400 543 ALYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIPTSLIESGFWVAVTYYVIGYDPNVVRFSRQ 622 (1085)
Q Consensus 543 ~lf~~l~~~~~~~~~~~~~~~~~~~v~~k~r~~~~y~~~ay~l~~~~~~iP~~~i~~~i~~~i~Y~~~g~~~~~~~f~~~ 622 (1085)
|+|-
T Consensus 237 ------------------------------------------------------------------MvG~---------- 240 (501)
T COG3845 237 ------------------------------------------------------------------MVGR---------- 240 (501)
T ss_pred ------------------------------------------------------------------hcCC----------
Confidence 0000
Q ss_pred HHHHHHHHHHHHHHHHHHhHcccCHHHHHHHHHHHHHHHHHHhhccccCCCchhHHHHhHhhcHHHHHHHHHHHhhhcCC
Q 001400 623 LLLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSFAMLVVMALGGFIISRDSIPKWWIWGFWVSPLMYAQNAASVNEFLGH 702 (1085)
Q Consensus 623 ~l~~~~~~~~~~~l~~~i~~~~~~~~va~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~w~~~isp~~y~~~a~~~nef~~~ 702 (1085)
T Consensus 241 -------------------------------------------------------------------------------- 240 (501)
T COG3845 241 -------------------------------------------------------------------------------- 240 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccCCCCCcchHHHHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccchhhhhhHhhhhcCc
Q 001400 703 SWDKKAGNSNFSLGEAILRQRSLFPESYWYWIGVGAMLGYTLLFNALFTFFLSYLNPLGKQQAVVSKKELQERDRRRKGE 782 (1085)
Q Consensus 703 ~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~w~~~g~ll~~~~~f~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 782 (1085)
++.. . .
T Consensus 241 ---------------~v~~-----------------------------------------------~----------~-- 246 (501)
T COG3845 241 ---------------EVVL-----------------------------------------------R----------V-- 246 (501)
T ss_pred ---------------cccc-----------------------------------------------c----------c--
Confidence 0000 0 0
Q ss_pred chhHHHHhhhhcccccCCcccccCCcccccccceeeeccceeeeeccccccccccccCCeEEeeeeeEEEeCCeEEEEEc
Q 001400 783 NVVIELREYLQRSSSLNGKYFKQKGMVLPFQPLSMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVG 862 (1085)
Q Consensus 783 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G 862 (1085)
. .... ..| +..+..++++-.. ..+...+++|||+|++||++||.|
T Consensus 247 --------------~-~~~~--~pg------~~vL~V~~L~v~~------------~~~~~~v~~vs~~Vr~GEIvGIAG 291 (501)
T COG3845 247 --------------V-KPPS--TPG------EVVLEVEDLSVKD------------RRGVTAVKDVSFEVRAGEIVGIAG 291 (501)
T ss_pred --------------c-cCCC--CCC------CeEEEEeeeEeec------------CCCCceeeeeeeEEecCcEEEEEe
Confidence 0 0000 000 1122333332211 112467889999999999999999
Q ss_pred cCCCChhHHHhhhhCCCCCCeeeeEEEEcCccC----Ch-hcccceEEEEccCC---CCCCCCCHHHHHHHhhhhcCC--
Q 001400 863 VSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPK----RQ-ETFARISGYCEQND---IHSPGLTVLESLLFSAWLRLP-- 932 (1085)
Q Consensus 863 ~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~----~~-~~~~~~~gy~~Q~~---~~~~~~tv~e~l~~~~~~~~~-- 932 (1085)
..|-|-+.|+.+|+|..+ +..|+|.++|.+. +. ...+..+||+|.+. .+.+.+|+.||+.+....+.|
T Consensus 292 V~GNGQ~eL~eaisGlr~--~~~G~I~l~G~~v~~~~~~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~ 369 (501)
T COG3845 292 VAGNGQSELVEAISGLRK--PASGRILLNGKDVLGRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFS 369 (501)
T ss_pred cCCCCHHHHHHHHhCCCc--cCCceEEECCEeccccCCHHHHHhcCCccCChhhccCccccCccHHHHhhhhhccccccc
Confidence 999999999999999875 3469999999985 22 23445689999985 456899999999876432211
Q ss_pred --CcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH
Q 001400 933 --SEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRT 1010 (1085)
Q Consensus 933 --~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEPtsgLD~~~~~~i~~~ 1010 (1085)
.-......+++..++++.++....... .....||||++||+-+||+|.++|++|++.+||-|||..+.+.|.+.
T Consensus 370 ~~g~l~~~~i~~~a~~li~~fdVr~~~~~----~~a~~LSGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~ 445 (501)
T COG3845 370 RGGFLDRRAIRKFARELIEEFDVRAPSPD----APARSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHER 445 (501)
T ss_pred cccccCHHHHHHHHHHHHHHcCccCCCCC----cchhhcCCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHH
Confidence 123445667788889998887622111 12457999999999999999999999999999999999999999999
Q ss_pred HHHHHHCCceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCCC
Q 001400 1011 VRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGS 1056 (1085)
Q Consensus 1011 l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~~ 1056 (1085)
|.+.++.|++|+++|-+++ +++..+|||.||.+ |+++...+..+
T Consensus 446 l~e~r~~G~AVLLiS~dLD-Eil~lsDrIaVi~~-Gri~~~~~~~~ 489 (501)
T COG3845 446 LLELRDAGKAVLLISEDLD-EILELSDRIAVIYE-GRIVGIVPPEE 489 (501)
T ss_pred HHHHHhcCCEEEEEehhHH-HHHHhhheeeeeeC-Cceeccccccc
Confidence 9999999999999999998 79999999999985 78888777654
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-47 Score=380.73 Aligned_cols=214 Identities=27% Similarity=0.380 Sum_probs=188.6
Q ss_pred cccccccccCCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCC----hhcccceEEE
Q 001400 831 ELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKR----QETFARISGY 906 (1085)
Q Consensus 831 ~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~----~~~~~~~~gy 906 (1085)
+++++.+.+++..+|+|||++|++||+++|+|||||||||||+||.++.. +.+|+|.++|.++. ....|+.+|+
T Consensus 4 ~i~~l~K~fg~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~--~~~G~I~i~g~~~~~~~~~~~~R~~vGm 81 (240)
T COG1126 4 EIKNLSKSFGDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEE--PDSGSITVDGEDVGDKKDILKLRRKVGM 81 (240)
T ss_pred EEEeeeEEeCCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcC--CCCceEEECCEeccchhhHHHHHHhcCe
Confidence 45666777889999999999999999999999999999999999999877 56999999997543 2457889999
Q ss_pred EccCCCCCCCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcC
Q 001400 907 CEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVAN 986 (1085)
Q Consensus 907 ~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~ 986 (1085)
|+|+..+||.+||.||+.++...- ...+.++.++...+.|+.+||.+.++.+. .+|||||||||+|||||+.+
T Consensus 82 VFQ~fnLFPHlTvleNv~lap~~v--~~~~k~eA~~~A~~lL~~VGL~~ka~~yP-----~qLSGGQqQRVAIARALaM~ 154 (240)
T COG1126 82 VFQQFNLFPHLTVLENVTLAPVKV--KKLSKAEAREKALELLEKVGLADKADAYP-----AQLSGGQQQRVAIARALAMD 154 (240)
T ss_pred ecccccccccchHHHHHHhhhHHH--cCCCHHHHHHHHHHHHHHcCchhhhhhCc-----cccCcHHHHHHHHHHHHcCC
Confidence 999999999999999999875322 23456667777889999999998888763 58999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCC
Q 001400 987 PSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1085)
Q Consensus 987 p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~ 1055 (1085)
|+++++|||||+|||+....+.+.+++++++|.|.||+||++.+ ..+.+||+++|+ +|+++..|+..
T Consensus 155 P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~F-Ar~VadrviFmd-~G~iie~g~p~ 221 (240)
T COG1126 155 PKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGF-AREVADRVIFMD-QGKIIEEGPPE 221 (240)
T ss_pred CCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHH-HHHhhheEEEee-CCEEEEecCHH
Confidence 99999999999999999999999999999999999999999875 678899999998 57888888654
|
|
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-45 Score=406.69 Aligned_cols=204 Identities=21% Similarity=0.287 Sum_probs=154.9
Q ss_pred cceeeeccceeeeeccccccccccccCCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCc
Q 001400 814 PLSMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGY 893 (1085)
Q Consensus 814 ~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~ 893 (1085)
|..+.++|+.+.++ ++..++++++|.|.+++.+|+|||||+||||||+++.|... +..|.+.-.-+
T Consensus 387 ~pvi~~~nv~F~y~------------~~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~--p~~G~vs~~~H 452 (614)
T KOG0927|consen 387 PPVIMVQNVSFGYS------------DNPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQ--PTIGMVSRHSH 452 (614)
T ss_pred CCeEEEeccccCCC------------CcchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccc--ccccccccccc
Confidence 34556666665442 22368889999999999999999999999999999999766 45777654332
Q ss_pred cCChhcccceEEEEccC--CCCCCCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCH
Q 001400 894 PKRQETFARISGYCEQN--DIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLST 971 (1085)
Q Consensus 894 ~~~~~~~~~~~gy~~Q~--~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~ 971 (1085)
. ++++..|+ +.+.-..++.|+++=. .+ + ..+.+.+..++..+||....... ..++||+
T Consensus 453 ~--------~~~~y~Qh~~e~ldl~~s~le~~~~~----~~-~---~~~~e~~r~ilgrfgLtgd~q~~----p~~~LS~ 512 (614)
T KOG0927|consen 453 N--------KLPRYNQHLAEQLDLDKSSLEFMMPK----FP-D---EKELEEMRSILGRFGLTGDAQVV----PMSQLSD 512 (614)
T ss_pred c--------cchhhhhhhHhhcCcchhHHHHHHHh----cc-c---cchHHHHHHHHHHhCCCcccccc----chhhccc
Confidence 1 23344443 2233355677766421 11 1 23345577888888988544332 2468999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEecCcEEEEe
Q 001400 972 EQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYA 1051 (1085)
Q Consensus 972 Gqrqrl~iA~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~ 1051 (1085)
|||+||.+|+.++..|.||+|||||+|||..+...+.++|.++ ..+||++|||..+ +-..++++.+..+++...+.
T Consensus 513 Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~---~Ggvv~vSHDfrl-I~qVaeEi~~c~~~~~~~~~ 588 (614)
T KOG0927|consen 513 GQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEF---PGGVVLVSHDFRL-ISQVAEEIWVCENGTVTKWD 588 (614)
T ss_pred ccchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhcc---CCceeeeechhhH-HHHHHHHhHhhccCceeecC
Confidence 9999999999999999999999999999999999999999885 5699999999874 77889999999999999999
Q ss_pred cCCC
Q 001400 1052 GPLG 1055 (1085)
Q Consensus 1052 g~~~ 1055 (1085)
|...
T Consensus 589 G~i~ 592 (614)
T KOG0927|consen 589 GDIE 592 (614)
T ss_pred ccHH
Confidence 8764
|
|
| >KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-45 Score=441.14 Aligned_cols=248 Identities=44% Similarity=0.779 Sum_probs=227.6
Q ss_pred ccceeeeccceeeeeccccccccccccCCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCC-eeeeEEEEc
Q 001400 813 QPLSMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGG-IIEGDIYIS 891 (1085)
Q Consensus 813 ~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~-~~~G~i~i~ 891 (1085)
.+..+.|+++++....+.. ..+++|+|||++++|||++|||||+||||||||++|+|+..++ ..+|+|.+|
T Consensus 22 ~~~~~~~~~~~~~~~~~~~--------~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvN 93 (613)
T KOG0061|consen 22 EPVKLSFRNLTLSSKEKSK--------KTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLN 93 (613)
T ss_pred ccceeEEEEEEEEecCCCC--------ccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEEC
Confidence 3556778888776643211 3578999999999999999999999999999999999988753 689999999
Q ss_pred CccCChhcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCH
Q 001400 892 GYPKRQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLST 971 (1085)
Q Consensus 892 g~~~~~~~~~~~~gy~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~ 971 (1085)
|++.....+++.+|||.|+|.+.|.+||+|++.|+|.+|.|.....++++++++++++.++|.+++|.++|.++.+++||
T Consensus 94 G~~~~~~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSG 173 (613)
T KOG0061|consen 94 GRPRDSRSFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSG 173 (613)
T ss_pred CccCchhhhhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCcccc
Confidence 98888888999999999999999999999999999999999888889999999999999999999999999888889999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEecCcEEEEe
Q 001400 972 EQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYA 1051 (1085)
Q Consensus 972 Gqrqrl~iA~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~ 1051 (1085)
||||||+||.+|+.+|+||||||||||||+.++..++++|++++++|+|||||+|||+.++++.||++++|.+ |+++|.
T Consensus 174 GErkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~-G~~vy~ 252 (613)
T KOG0061|consen 174 GERKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSE-GEVVYS 252 (613)
T ss_pred chhhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcC-CcEEEe
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999986 599999
Q ss_pred cCCCCchHHHHHHHHhccccccCC
Q 001400 1052 GPLGSKSCELIKYFEVESFMFKSP 1075 (1085)
Q Consensus 1052 g~~~~~~~~~~~~~~~~~g~~~~~ 1075 (1085)
|+. .++.+||+.. |-| ||
T Consensus 253 G~~----~~~~~ff~~~-G~~-~P 270 (613)
T KOG0061|consen 253 GSP----RELLEFFSSL-GFP-CP 270 (613)
T ss_pred cCH----HHHHHHHHhC-CCC-CC
Confidence 995 5899999987 777 44
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-44 Score=360.81 Aligned_cols=221 Identities=27% Similarity=0.381 Sum_probs=187.9
Q ss_pred ceeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCC----CCCceEEEEccCCCCCC
Q 001400 147 KLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEF----VPPRTSAYVSQQDWQVA 222 (1085)
Q Consensus 147 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~----~~~~~~~yv~Q~d~~~~ 222 (1085)
+..+|+|||++|++||+++|+|||||||||||++|.|+..++ +|+|.++|.++... ..++.+|+|+|+..+||
T Consensus 14 ~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~---~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFP 90 (240)
T COG1126 14 DKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPD---SGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFP 90 (240)
T ss_pred CeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCC---CceEEECCEeccchhhHHHHHHhcCeecccccccc
Confidence 457999999999999999999999999999999999998776 99999999765322 24678999999999999
Q ss_pred CCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCc
Q 001400 223 EMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDE 302 (1085)
Q Consensus 223 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 302 (1085)
++||-||+..+...-. .....+.+....++|+.+||.+.+|.+
T Consensus 91 HlTvleNv~lap~~v~---------------------------------~~~k~eA~~~A~~lL~~VGL~~ka~~y---- 133 (240)
T COG1126 91 HLTVLENVTLAPVKVK---------------------------------KLSKAEAREKALELLEKVGLADKADAY---- 133 (240)
T ss_pred cchHHHHHHhhhHHHc---------------------------------CCCHHHHHHHHHHHHHHcCchhhhhhC----
Confidence 9999999988643210 011112234577889999999998865
Q ss_pred ccccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEec
Q 001400 303 MLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLS 382 (1085)
Q Consensus 303 ~~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~ 382 (1085)
+.+|||||||||+|||||+.+|+++++|||||+|||....++.+.++++++. +.|++.++|....+.+.+|||+.|+
T Consensus 134 -P~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~e--GmTMivVTHEM~FAr~VadrviFmd 210 (240)
T COG1126 134 -PAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEE--GMTMIIVTHEMGFAREVADRVIFMD 210 (240)
T ss_pred -ccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHc--CCeEEEEechhHHHHHhhheEEEee
Confidence 4579999999999999999999999999999999999999999999999974 5666668899999999999999999
Q ss_pred CCeEEEecChhhHHHHHHhCCCCCCCCCChhHHHHh
Q 001400 383 EGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQE 418 (1085)
Q Consensus 383 ~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~adfl~~ 418 (1085)
+|+++.+|+++++ |..|.+....+|+..
T Consensus 211 ~G~iie~g~p~~~--------f~~p~~~R~~~FL~~ 238 (240)
T COG1126 211 QGKIIEEGPPEEF--------FDNPKSERTRQFLSK 238 (240)
T ss_pred CCEEEEecCHHHH--------hcCCCCHHHHHHHHh
Confidence 9999999998876 456776667777754
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-43 Score=374.94 Aligned_cols=204 Identities=25% Similarity=0.364 Sum_probs=183.4
Q ss_pred CeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCCh------hcccceEEEEccCCCCC
Q 001400 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ------ETFARISGYCEQNDIHS 914 (1085)
Q Consensus 841 ~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~------~~~~~~~gy~~Q~~~~~ 914 (1085)
...+|+|||++|++||++||+|+||||||||++++.++.. |.+|+|.++|.++.. ..+|+.||++||+..++
T Consensus 18 ~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~--PtsG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFnLL 95 (339)
T COG1135 18 TVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLER--PTSGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLL 95 (339)
T ss_pred ceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCC--CCCceEEEcCEecccCChHHHHHHHhhccEEecccccc
Confidence 4679999999999999999999999999999999999877 579999999976532 35788899999999999
Q ss_pred CCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Q 001400 915 PGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDE 994 (1085)
Q Consensus 915 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDE 994 (1085)
...||.||+.|...+.. .++++.++++.++++.+||.+.++.+. .+|||||||||+|||||+.+|+||+.||
T Consensus 96 ssrTV~~NvA~PLeiag---~~k~ei~~RV~elLelVgL~dk~~~yP-----~qLSGGQKQRVaIARALa~~P~iLL~DE 167 (339)
T COG1135 96 SSRTVFENVAFPLELAG---VPKAEIKQRVAELLELVGLSDKADRYP-----AQLSGGQKQRVAIARALANNPKILLCDE 167 (339)
T ss_pred ccchHHhhhhhhHhhcC---CCHHHHHHHHHHHHHHcCChhhhccCc-----hhcCcchhhHHHHHHHHhcCCCEEEecC
Confidence 99999999999876653 456778889999999999998877653 5899999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHC-CceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCCC
Q 001400 995 PTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGS 1056 (1085)
Q Consensus 995 PtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~~ 1056 (1085)
|||+|||++.+.|.+.|+++.++ |.||++|||+++. +-+.|||+.+|+ .|+++..|++.+
T Consensus 168 aTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~V-vk~ic~rVavm~-~G~lvE~G~v~~ 228 (339)
T COG1135 168 ATSALDPETTQSILELLKDINRELGLTIVLITHEMEV-VKRICDRVAVLD-QGRLVEEGTVSE 228 (339)
T ss_pred ccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHH-HHHHhhhheEee-CCEEEEeccHHH
Confidence 99999999999999999999765 9999999999874 778899999998 579999998765
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-43 Score=374.49 Aligned_cols=226 Identities=26% Similarity=0.390 Sum_probs=192.4
Q ss_pred ccccccccCCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCCh---hcccceEEEEc
Q 001400 832 LKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFARISGYCE 908 (1085)
Q Consensus 832 ~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gy~~ 908 (1085)
+++++..|+++.+|+|+||++++|++++|+|||||||||||++|+|..+ +.+|+|.++|.++.. ..+++.+||+|
T Consensus 5 ~~~ls~~y~~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~--p~~G~V~l~g~~i~~~~~kelAk~ia~vp 82 (258)
T COG1120 5 VENLSFGYGGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLK--PKSGEVLLDGKDIASLSPKELAKKLAYVP 82 (258)
T ss_pred EEEEEEEECCeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCC--CCCCEEEECCCchhhcCHHHHhhhEEEec
Confidence 3444555678899999999999999999999999999999999999776 568999999998653 56889999999
Q ss_pred cCCCCCCCCCHHHHHHHhhhhcCC-CcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCC
Q 001400 909 QNDIHSPGLTVLESLLFSAWLRLP-SEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANP 987 (1085)
Q Consensus 909 Q~~~~~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p 987 (1085)
|.+...+.+||+|-+.++..-+.. .....+++.+.++++++.+++.++++..+ ..||||||||+.|||||+++|
T Consensus 83 Q~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~-----~~LSGGerQrv~iArALaQ~~ 157 (258)
T COG1120 83 QSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPV-----DELSGGERQRVLIARALAQET 157 (258)
T ss_pred cCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcc-----cccChhHHHHHHHHHHHhcCC
Confidence 999888899999999988432211 11224455567999999999999998865 589999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCCC--chHHHHHH
Q 001400 988 SIVFMDEPTSGLDARAAAIVMRTVRNIVN-TGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGS--KSCELIKY 1064 (1085)
Q Consensus 988 ~illlDEPtsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~~--~~~~~~~~ 1064 (1085)
+||+||||||+||...+..++++++++.+ +|.|||++.||++. ...+||++++|++ |++++.|+..+ ..+.+-+.
T Consensus 158 ~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~-A~ryad~~i~lk~-G~i~a~G~p~evlT~e~l~~V 235 (258)
T COG1120 158 PILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNL-AARYADHLILLKD-GKIVAQGTPEEVLTEENLREV 235 (258)
T ss_pred CEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-HHHhCCEEEEEEC-CeEEeecCcchhcCHHHHHHH
Confidence 99999999999999999999999999984 59999999999985 7889999999985 79999998765 24455556
Q ss_pred HH
Q 001400 1065 FE 1066 (1085)
Q Consensus 1065 ~~ 1066 (1085)
|.
T Consensus 236 yg 237 (258)
T COG1120 236 YG 237 (258)
T ss_pred hC
Confidence 63
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-43 Score=368.61 Aligned_cols=221 Identities=27% Similarity=0.403 Sum_probs=184.2
Q ss_pred ccccCCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCChhcccceEEEEccCCC--C
Q 001400 836 GVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDI--H 913 (1085)
Q Consensus 836 ~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gy~~Q~~~--~ 913 (1085)
++.|++.++|+||||+|++|++++|+||||||||||+|+|.|..+ +.+|+|.+.|.+.....-+.++|||||... .
T Consensus 11 ~v~y~~~~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~--p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~ 88 (254)
T COG1121 11 TVSYGNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLK--PSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDR 88 (254)
T ss_pred EEEECCEeeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCc--CCcceEEEccccccccccCCeEEEcCcccccCC
Confidence 333454469999999999999999999999999999999999766 568999999998765544678999999642 2
Q ss_pred CCCCCHHHHHHHhhhhcCC-CcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q 001400 914 SPGLTVLESLLFSAWLRLP-SEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFM 992 (1085)
Q Consensus 914 ~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illl 992 (1085)
...+||+|-+..+.+.+.. .....+.+++.++++|+.+|+.++++..++ +|||||+||+.|||||+++|++|+|
T Consensus 89 ~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~-----~LSGGQ~QRV~lARAL~~~p~lllL 163 (254)
T COG1121 89 SFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIG-----ELSGGQKQRVLLARALAQNPDLLLL 163 (254)
T ss_pred CCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCccc-----ccCcHHHHHHHHHHHhccCCCEEEe
Confidence 3457999999887443321 111233446789999999999999998764 7999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCCCc--hHHHHHHHH
Q 001400 993 DEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGSK--SCELIKYFE 1066 (1085)
Q Consensus 993 DEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~~~--~~~~~~~~~ 1066 (1085)
||||+|+|+.++..++++|++++++|+||++|+||++ .+.+.||+++.|+ +++++.|+..+. .+++..-|.
T Consensus 164 DEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~-~v~~~~D~vi~Ln--~~~~~~G~~~~~~~~~~l~~~~g 236 (254)
T COG1121 164 DEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLG-LVMAYFDRVICLN--RHLIASGPPEEVLTEENLEKAFG 236 (254)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcH-HhHhhCCEEEEEc--CeeEeccChhhccCHHHHHHHhC
Confidence 9999999999999999999999988999999999998 5889999999997 479999998763 234555454
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-43 Score=358.28 Aligned_cols=232 Identities=25% Similarity=0.333 Sum_probs=198.5
Q ss_pred ccccccccccCCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCCh------hcccce
Q 001400 830 VELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ------ETFARI 903 (1085)
Q Consensus 830 ~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~------~~~~~~ 903 (1085)
++++++.+.++++.+++|||++|++||+++|||+||+||||||++|.|... +.+|+|.++|.++.+ ...+++
T Consensus 9 I~vr~v~~~fG~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~--P~~GeI~i~G~~i~~ls~~~~~~ir~r 86 (263)
T COG1127 9 IEVRGVTKSFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLR--PDKGEILIDGEDIPQLSEEELYEIRKR 86 (263)
T ss_pred EEEeeeeeecCCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCC--CCCCeEEEcCcchhccCHHHHHHHHhh
Confidence 345555666789999999999999999999999999999999999999877 569999999998642 246788
Q ss_pred EEEEccCCCCCCCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcc-cccccCCCCCCCCCHHHHHHHHHHHH
Q 001400 904 SGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSL-SGALIGLPGINGLSTEQRKRLTIAVE 982 (1085)
Q Consensus 904 ~gy~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~~~~~~~~LS~Gqrqrl~iA~a 982 (1085)
+|+++|+-.+|..+||+||+.|.. |.....+....++.+..-++++||... .+.. +.+||||++||++||||
T Consensus 87 ~GvlFQ~gALFssltV~eNVafpl--re~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~-----PsELSGGM~KRvaLARA 159 (263)
T COG1127 87 MGVLFQQGALFSSLTVFENVAFPL--REHTKLPESLIRELVLMKLELVGLRGAAADLY-----PSELSGGMRKRVALARA 159 (263)
T ss_pred eeEEeeccccccccchhHhhheeh--HhhccCCHHHHHHHHHHHHHhcCCChhhhhhC-----chhhcchHHHHHHHHHH
Confidence 999999999999999999999864 333445566667778888888998876 4443 36899999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCCC----c
Q 001400 983 LVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGS----K 1057 (1085)
Q Consensus 983 L~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~~----~ 1057 (1085)
++.+|+|||+||||+||||.+...+-++|+++.++ |.|++++|||.+ .++..||++++|.+ |+++..|+..+ +
T Consensus 160 ialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~-s~~~i~Drv~~L~~-gkv~~~Gt~~el~~sd 237 (263)
T COG1127 160 IALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLD-SLLTIADRVAVLAD-GKVIAEGTPEELLASD 237 (263)
T ss_pred HhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChH-HHHhhhceEEEEeC-CEEEEeCCHHHHHhCC
Confidence 99999999999999999999999999999999876 999999999997 58899999999985 79999999865 2
Q ss_pred hHHHHHHHHhccccc
Q 001400 1058 SCELIKYFEVESFMF 1072 (1085)
Q Consensus 1058 ~~~~~~~~~~~~g~~ 1072 (1085)
..-+-+||.+..+=|
T Consensus 238 ~P~v~qf~~G~~~gp 252 (263)
T COG1127 238 DPWVRQFFNGIRDGP 252 (263)
T ss_pred CHHHHHHhcCCCCCc
Confidence 335778888775544
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-42 Score=355.73 Aligned_cols=210 Identities=26% Similarity=0.369 Sum_probs=184.9
Q ss_pred ceeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCC---CCceEEEEccCCCCCCC
Q 001400 147 KLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV---PPRTSAYVSQQDWQVAE 223 (1085)
Q Consensus 147 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~---~~~~~~yv~Q~d~~~~~ 223 (1085)
++.+++|+|++|++||+++++|||||||||+||+|.+++.|+ +|+|.+||.++.+.. .+|.+|||-|+-.+||+
T Consensus 13 ~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept---~G~I~i~g~~i~~~d~~~LRr~IGYviQqigLFPh 89 (309)
T COG1125 13 NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPT---SGEILIDGEDISDLDPVELRRKIGYVIQQIGLFPH 89 (309)
T ss_pred CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCC---CceEEECCeecccCCHHHHHHhhhhhhhhcccCCC
Confidence 457999999999999999999999999999999999999887 999999999987754 47899999999999999
Q ss_pred CCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCcc
Q 001400 224 MTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEM 303 (1085)
Q Consensus 224 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 303 (1085)
+||.|||.+-..+.+-. .++.+.+++++|+.+||+.. ...+++
T Consensus 90 ~Tv~eNIa~VP~L~~w~----------------------------------k~~i~~r~~ELl~lvgL~p~---~~~~Ry 132 (309)
T COG1125 90 LTVAENIATVPKLLGWD----------------------------------KERIKKRADELLDLVGLDPS---EYADRY 132 (309)
T ss_pred ccHHHHHHhhhhhcCCC----------------------------------HHHHHHHHHHHHHHhCCCHH---HHhhcC
Confidence 99999998866554321 12234569999999999752 122456
Q ss_pred cccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEecC
Q 001400 304 LKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSE 383 (1085)
Q Consensus 304 ~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~~ 383 (1085)
+..|||||+|||.+||||+.+|+|++||||+++||+-++.++.+.++++.+..++| |+.++|+.+|++.++|||++|++
T Consensus 133 P~eLSGGQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kT-ivfVTHDidEA~kLadri~vm~~ 211 (309)
T COG1125 133 PHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKT-IVFVTHDIDEALKLADRIAVMDA 211 (309)
T ss_pred chhcCcchhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCE-EEEEecCHHHHHhhhceEEEecC
Confidence 77899999999999999999999999999999999999999999999998887655 55588999999999999999999
Q ss_pred CeEEEecChhhHHH
Q 001400 384 GQIVYQGPRVSVLD 397 (1085)
Q Consensus 384 G~iv~~G~~~~~~~ 397 (1085)
|+++..+++++++.
T Consensus 212 G~i~Q~~~P~~il~ 225 (309)
T COG1125 212 GEIVQYDTPDEILA 225 (309)
T ss_pred CeEEEeCCHHHHHh
Confidence 99999999999874
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-42 Score=365.85 Aligned_cols=224 Identities=26% Similarity=0.374 Sum_probs=194.5
Q ss_pred cceeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCC------CCceEEEEccCCC
Q 001400 146 SKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV------PPRTSAYVSQQDW 219 (1085)
Q Consensus 146 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~------~~~~~~yv~Q~d~ 219 (1085)
....+|+|||+.|++|++++|+|+||||||||++++.++-.|+ +|+|.++|.++.... .++.+|+++|+..
T Consensus 17 ~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~Pt---sG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFn 93 (339)
T COG1135 17 GTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPT---SGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFN 93 (339)
T ss_pred CceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCC---CceEEEcCEecccCChHHHHHHHhhccEEecccc
Confidence 3467999999999999999999999999999999999988876 999999998876653 3578999999999
Q ss_pred CCCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccc
Q 001400 220 QVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLV 299 (1085)
Q Consensus 220 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~v 299 (1085)
++...||.||++|..+..+..+ .+.+.++.++|+.+||++.+|..
T Consensus 94 LLssrTV~~NvA~PLeiag~~k----------------------------------~ei~~RV~elLelVgL~dk~~~y- 138 (339)
T COG1135 94 LLSSRTVFENVAFPLELAGVPK----------------------------------AEIKQRVAELLELVGLSDKADRY- 138 (339)
T ss_pred ccccchHHhhhhhhHhhcCCCH----------------------------------HHHHHHHHHHHHHcCChhhhccC-
Confidence 9999999999999887765221 12245699999999999888755
Q ss_pred cCcccccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEE
Q 001400 300 GDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVI 379 (1085)
Q Consensus 300 g~~~~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii 379 (1085)
+.+|||||||||+|||||+.+|+||++|||||+|||.|+..|.+.|+++.+++| .||+.++|-++-+-.+||||.
T Consensus 139 ----P~qLSGGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lg-lTIvlITHEm~Vvk~ic~rVa 213 (339)
T COG1135 139 ----PAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELG-LTIVLITHEMEVVKRICDRVA 213 (339)
T ss_pred ----chhcCcchhhHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcC-CEEEEEechHHHHHHHhhhhe
Confidence 457999999999999999999999999999999999999999999999998775 556668899999999999999
Q ss_pred EecCCeEEEecChhhHHHHHHhCCCCCCCCCChhHHHHhhc
Q 001400 380 LLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVT 420 (1085)
Q Consensus 380 ~L~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~adfl~~v~ 420 (1085)
+|++|+++++|+..++ |..|.+.-..+|+.+..
T Consensus 214 vm~~G~lvE~G~v~~v--------F~~Pk~~~t~~fi~~~~ 246 (339)
T COG1135 214 VLDQGRLVEEGTVSEV--------FANPKHAITQEFIGETL 246 (339)
T ss_pred EeeCCEEEEeccHHHh--------hcCcchHHHHHHHHhhc
Confidence 9999999999999887 44566655666666544
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-42 Score=360.06 Aligned_cols=201 Identities=25% Similarity=0.378 Sum_probs=176.4
Q ss_pred cccccCCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCChhcccceEEEEccCCCCC
Q 001400 835 EGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHS 914 (1085)
Q Consensus 835 ~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gy~~Q~~~~~ 914 (1085)
.++.++...+|+|||++|.+||+++|+|||||||||||++|+|..+ +.+|+|.++|.++. .....+|||+|++.++
T Consensus 9 v~~~f~~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~--p~~G~V~~~g~~v~--~p~~~~~~vFQ~~~Ll 84 (248)
T COG1116 9 VSKSFGGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEK--PTSGEVLLDGRPVT--GPGPDIGYVFQEDALL 84 (248)
T ss_pred eEEEeCceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCcccC--CCCCCEEEEeccCccc
Confidence 3344566889999999999999999999999999999999999887 56899999998863 2355689999999999
Q ss_pred CCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Q 001400 915 PGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDE 994 (1085)
Q Consensus 915 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDE 994 (1085)
|-+||+||+.|+...+. ....+..+.++++++.+||.+..++.. .+|||||||||+|||||+.+|+||+|||
T Consensus 85 PW~Tv~~NV~l~l~~~~---~~~~e~~~~a~~~L~~VgL~~~~~~~P-----~qLSGGMrQRVaiARAL~~~P~lLLlDE 156 (248)
T COG1116 85 PWLTVLDNVALGLELRG---KSKAEARERAKELLELVGLAGFEDKYP-----HQLSGGMRQRVAIARALATRPKLLLLDE 156 (248)
T ss_pred chhhHHhhheehhhccc---cchHhHHHHHHHHHHHcCCcchhhcCc-----cccChHHHHHHHHHHHHhcCCCEEEEcC
Confidence 99999999999876543 344556668999999999999988763 6899999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHH-CCceEEEEecCccHHHHHhcCEEEEEecC-cEE
Q 001400 995 PTSGLDARAAAIVMRTVRNIVN-TGRTIVCTIHQPSIDIFESFDELLFMKRG-GEL 1048 (1085)
Q Consensus 995 PtsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~il~l~~g-G~~ 1048 (1085)
|+++||+.++..+++.+.++.+ .++|||+||||.+ +....+|||++|.++ |++
T Consensus 157 PFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~-EAv~LsdRivvl~~~P~~i 211 (248)
T COG1116 157 PFGALDALTREELQDELLRLWEETRKTVLLVTHDVD-EAVYLADRVVVLSNRPGRI 211 (248)
T ss_pred CcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHhhhCEEEEecCCCcce
Confidence 9999999999999999999975 5899999999997 677788999999875 444
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-42 Score=355.11 Aligned_cols=213 Identities=25% Similarity=0.343 Sum_probs=187.5
Q ss_pred ccccccccCCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCCh---hcccceEEEEc
Q 001400 832 LKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFARISGYCE 908 (1085)
Q Consensus 832 ~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gy~~ 908 (1085)
+++.++.|+++.+++|+|++|++||+++++|||||||||+|++|.++.. +.+|+|+|+|.++.. ...||.+|||-
T Consensus 4 ~~nvsk~y~~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLie--pt~G~I~i~g~~i~~~d~~~LRr~IGYvi 81 (309)
T COG1125 4 FENVSKRYGNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIE--PTSGEILIDGEDISDLDPVELRRKIGYVI 81 (309)
T ss_pred eeeeehhcCCceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccC--CCCceEEECCeecccCCHHHHHHhhhhhh
Confidence 3444556678899999999999999999999999999999999999877 579999999998764 46789999999
Q ss_pred cCCCCCCCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCc--ccccccCCCCCCCCCHHHHHHHHHHHHHhcC
Q 001400 909 QNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTS--LSGALIGLPGINGLSTEQRKRLTIAVELVAN 986 (1085)
Q Consensus 909 Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~ 986 (1085)
|.-.+||++||.||+.+-..+. .++.+..+++++|+|++++|.+ +.+.+ +.+|||||+||+.+||||+++
T Consensus 82 QqigLFPh~Tv~eNIa~VP~L~---~w~k~~i~~r~~ELl~lvgL~p~~~~~Ry-----P~eLSGGQQQRVGv~RALAad 153 (309)
T COG1125 82 QQIGLFPHLTVAENIATVPKLL---GWDKERIKKRADELLDLVGLDPSEYADRY-----PHELSGGQQQRVGVARALAAD 153 (309)
T ss_pred hhcccCCCccHHHHHHhhhhhc---CCCHHHHHHHHHHHHHHhCCCHHHHhhcC-----chhcCcchhhHHHHHHHHhcC
Confidence 9999999999999998765543 4566777888999999999975 55554 368999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCCC
Q 001400 987 PSIVFMDEPTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGS 1056 (1085)
Q Consensus 987 p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~~ 1056 (1085)
|+||+||||+++|||-++..+++.++++.++ |+|||++|||++ +.++.+||+.+|+ +|+++..++..+
T Consensus 154 P~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDid-EA~kLadri~vm~-~G~i~Q~~~P~~ 222 (309)
T COG1125 154 PPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDID-EALKLADRIAVMD-AGEIVQYDTPDE 222 (309)
T ss_pred CCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHH-HHHhhhceEEEec-CCeEEEeCCHHH
Confidence 9999999999999999999999999999765 999999999997 6889999999998 578887776543
|
|
| >PLN03211 ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-41 Score=417.58 Aligned_cols=252 Identities=35% Similarity=0.573 Sum_probs=216.2
Q ss_pred cceeeeccceeeeeccc----------------cccccccccCCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhC
Q 001400 814 PLSMAFGNINYFVDVPV----------------ELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG 877 (1085)
Q Consensus 814 ~~~~~~~~~~y~v~~~~----------------~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g 877 (1085)
+.++.|.++.|.+.... ..++..+.++++.+|+|||+++++||++||+||||||||||+++|+|
T Consensus 37 ~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG 116 (659)
T PLN03211 37 PITLKFMDVCYRVKFENMKNKGSNIKRILGHKPKISDETRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAG 116 (659)
T ss_pred ceEEEEEeEEEEEccCCCcccccccccccccccccccccccCCCCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhC
Confidence 67888999999886542 12233445667889999999999999999999999999999999999
Q ss_pred CCCCCeeeeEEEEcCccCChhcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCccc
Q 001400 878 RKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLS 957 (1085)
Q Consensus 878 ~~~~~~~~G~i~i~g~~~~~~~~~~~~gy~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~ 957 (1085)
+..++..+|+|.+||.+.... .++.+|||+|++.+++.+||+|++.|.+.++.+.....++..+.++++++.++|.+..
T Consensus 117 ~~~~~~~sG~I~inG~~~~~~-~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~ 195 (659)
T PLN03211 117 RIQGNNFTGTILANNRKPTKQ-ILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCE 195 (659)
T ss_pred CCCCCceeEEEEECCEECchh-hccceEEECcccccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhc
Confidence 866434689999999876533 3456899999999999999999999988776554444455567789999999999988
Q ss_pred ccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcC
Q 001400 958 GALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFD 1037 (1085)
Q Consensus 958 ~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d 1037 (1085)
+..++....++||||||||++||++|+.+|+||||||||+|||+.++..+++.|++++++|+|||+++|||+.++++.||
T Consensus 196 ~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D 275 (659)
T PLN03211 196 NTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFD 275 (659)
T ss_pred CceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhc
Confidence 88777655678999999999999999999999999999999999999999999999988899999999999866889999
Q ss_pred EEEEEecCcEEEEecCCCCchHHHHHHHHhccccc
Q 001400 1038 ELLFMKRGGELIYAGPLGSKSCELIKYFEVESFMF 1072 (1085)
Q Consensus 1038 ~il~l~~gG~~~~~g~~~~~~~~~~~~~~~~~g~~ 1072 (1085)
++++|+ +|++++.|+. +++++||+++ |.+
T Consensus 276 ~iilL~-~G~iv~~G~~----~~~~~~f~~~-G~~ 304 (659)
T PLN03211 276 SVLVLS-EGRCLFFGKG----SDAMAYFESV-GFS 304 (659)
T ss_pred eEEEec-CCcEEEECCH----HHHHHHHHHC-CCC
Confidence 999998 4799999985 5899999998 655
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-42 Score=353.82 Aligned_cols=219 Identities=27% Similarity=0.377 Sum_probs=185.8
Q ss_pred ccccccccc-CCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCCh------hcccce
Q 001400 831 ELKQEGVLE-DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ------ETFARI 903 (1085)
Q Consensus 831 ~~~~~~~~~-~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~------~~~~~~ 903 (1085)
+++++.+.| +++++|+|||++|++||++||+|+|||||||||++|.|... +.+|+|.++|.++.. ..+++.
T Consensus 5 ~~~nl~k~yp~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d--~t~G~i~~~g~~i~~~~~k~lr~~r~~ 82 (258)
T COG3638 5 EVKNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVD--PTSGEILFNGVQITKLKGKELRKLRRD 82 (258)
T ss_pred EEeeeeeecCCCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccC--CCcceEEecccchhccchHHHHHHHHh
Confidence 344445555 67899999999999999999999999999999999999765 568999999976432 356788
Q ss_pred EEEEccCCCCCCCCCHHHHHHHhhhhcCC-----CcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHH
Q 001400 904 SGYCEQNDIHSPGLTVLESLLFSAWLRLP-----SEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLT 978 (1085)
Q Consensus 904 ~gy~~Q~~~~~~~~tv~e~l~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~ 978 (1085)
+||++|++.+.+.++|.+|++.+..-+.+ .....++.+..+-++++.+|+.+.+-... +.|||||+|||+
T Consensus 83 iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra-----~~LSGGQQQRVa 157 (258)
T COG3638 83 IGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRA-----STLSGGQQQRVA 157 (258)
T ss_pred ceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHh-----ccCCcchhHHHH
Confidence 99999999999999999999877432211 23344566677788999999987766554 479999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCCCc
Q 001400 979 IAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVN-TGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGSK 1057 (1085)
Q Consensus 979 iA~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~~~ 1057 (1085)
|||||+++|+||+.|||+++|||.+++.||+.|+++.+ .|.|||+..|+.++ ..++|||++-|++ |+++|+||..+.
T Consensus 158 IARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdl-A~~Y~~Riigl~~-G~ivfDg~~~el 235 (258)
T COG3638 158 IARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDL-AKKYADRIIGLKA-GRIVFDGPASEL 235 (258)
T ss_pred HHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHH-HHHHHhhheEecC-CcEEEeCChhhh
Confidence 99999999999999999999999999999999999975 59999999999875 6788999999985 799999998764
Q ss_pred h
Q 001400 1058 S 1058 (1085)
Q Consensus 1058 ~ 1058 (1085)
.
T Consensus 236 ~ 236 (258)
T COG3638 236 T 236 (258)
T ss_pred h
Confidence 3
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-41 Score=379.11 Aligned_cols=219 Identities=32% Similarity=0.441 Sum_probs=189.2
Q ss_pred cccccccC-CeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCCh--hcccceEEEEcc
Q 001400 833 KQEGVLED-RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ--ETFARISGYCEQ 909 (1085)
Q Consensus 833 ~~~~~~~~-~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~--~~~~~~~gy~~Q 909 (1085)
+++.+.++ ++.+|+||||+|++|+++||+||||||||||+++|+|... +.+|+|.++|.+... ...++.+||++|
T Consensus 8 ~~l~k~~~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~--p~~G~i~i~G~~~~~~~~~~~~~igy~~~ 85 (293)
T COG1131 8 RNLTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLK--PTSGEILVLGYDVVKEPAKVRRRIGYVPQ 85 (293)
T ss_pred cceEEEeCCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEEcCEeCccCHHHHHhheEEEcc
Confidence 34455567 5899999999999999999999999999999999999877 468999999987654 467788999999
Q ss_pred CCCCCCCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCE
Q 001400 910 NDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSI 989 (1085)
Q Consensus 910 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~i 989 (1085)
++.+++.+||+|++.|.+.++.+.. ....+.++++++.++|.+..+..+ ++||+||||||.||+||+++|++
T Consensus 86 ~~~~~~~lT~~e~l~~~~~l~~~~~---~~~~~~~~~~l~~~~L~~~~~~~~-----~~lS~G~kqrl~ia~aL~~~P~l 157 (293)
T COG1131 86 EPSLYPELTVRENLEFFARLYGLSK---EEAEERIEELLELFGLEDKANKKV-----RTLSGGMKQRLSIALALLHDPEL 157 (293)
T ss_pred CCCCCccccHHHHHHHHHHHhCCCh---hHHHHHHHHHHHHcCCchhhCcch-----hhcCHHHHHHHHHHHHHhcCCCE
Confidence 9999999999999999998886532 344567899999999998554433 57999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHCC-ceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCCCchHHHHHHHHh
Q 001400 990 VFMDEPTSGLDARAAAIVMRTVRNIVNTG-RTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGSKSCELIKYFEV 1067 (1085)
Q Consensus 990 lllDEPtsgLD~~~~~~i~~~l~~~~~~g-~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~~~~~~~~~~~~~ 1067 (1085)
|||||||+||||.++..+++.|++++++| +||+++||.++ ++...||++++|++ |++++.|+.. ++.+.+..
T Consensus 158 liLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~-e~~~~~d~v~il~~-G~~~~~g~~~----~l~~~~~~ 230 (293)
T COG1131 158 LILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILE-EAEELCDRVIILND-GKIIAEGTPE----ELKEKFGG 230 (293)
T ss_pred EEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHH-HHHHhCCEEEEEeC-CEEEEeCCHH----HHHHhhcc
Confidence 99999999999999999999999999887 89999999997 67788999999985 7999999653 35555443
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-42 Score=362.42 Aligned_cols=214 Identities=29% Similarity=0.412 Sum_probs=189.3
Q ss_pred cccccccCCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCc---cCCh-hcccceEEEEc
Q 001400 833 KQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGY---PKRQ-ETFARISGYCE 908 (1085)
Q Consensus 833 ~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~---~~~~-~~~~~~~gy~~ 908 (1085)
.+..+..+...+++|||++|+.||++||+|||||||||||++|+|+.+ +..|.|.++|. +... ....|++||++
T Consensus 6 ~~~~~~~~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~--p~~G~I~~~~~~l~D~~~~~~~~R~VGfvF 83 (345)
T COG1118 6 NNVKKRFGAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLET--PDAGRIRLNGRVLFDVSNLAVRDRKVGFVF 83 (345)
T ss_pred hhhhhhcccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCC--CCCceEEECCEeccchhccchhhcceeEEE
Confidence 333445567789999999999999999999999999999999999987 56999999998 5444 34568899999
Q ss_pred cCCCCCCCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCC
Q 001400 909 QNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPS 988 (1085)
Q Consensus 909 Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~ 988 (1085)
|+..+|+.+||.+|+.|+...+ ....+..+.+.++++++++++|.++.+.+. .+||||||||+++||||+.+|+
T Consensus 84 Q~YALF~HmtVa~NIAFGl~~~-~~~p~~~~~r~rv~elL~lvqL~~la~ryP-----~QLSGGQrQRVALARALA~eP~ 157 (345)
T COG1118 84 QHYALFPHMTVADNIAFGLKVR-KERPSEAEIRARVEELLRLVQLEGLADRYP-----AQLSGGQRQRVALARALAVEPK 157 (345)
T ss_pred echhhcccchHHhhhhhccccc-ccCCChhhHHHHHHHHHHHhcccchhhcCc-----hhcChHHHHHHHHHHHhhcCCC
Confidence 9999999999999999998766 233455677888999999999999988763 5899999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCCC
Q 001400 989 IVFMDEPTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGS 1056 (1085)
Q Consensus 989 illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~~ 1056 (1085)
+|+||||+++||+.-+..+.+.|+++.++ |.|+|+||||++ +..+.+||+++|++ |+|+..|+..+
T Consensus 158 vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~e-ea~~ladrvvvl~~-G~Ieqvg~p~e 224 (345)
T COG1118 158 VLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQE-EALELADRVVVLNQ-GRIEQVGPPDE 224 (345)
T ss_pred eEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHH-HHHhhcceEEEecC-CeeeeeCCHHH
Confidence 99999999999999999999999999876 999999999987 79999999999985 78998888653
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-42 Score=378.79 Aligned_cols=217 Identities=29% Similarity=0.419 Sum_probs=193.5
Q ss_pred ecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCC-CceEEEEccCCCCCCCCCHHH
Q 001400 150 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP-PRTSAYVSQQDWQVAEMTVRE 228 (1085)
Q Consensus 150 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~E 228 (1085)
+|+|+|+.|++||+++|+|||||||||||++|||+..++ +|+|.++|.++++..| +|.+|+|+|+..++|+|||+|
T Consensus 18 ~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~---~G~I~i~g~~vt~l~P~~R~iamVFQ~yALyPhmtV~~ 94 (338)
T COG3839 18 VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPT---SGEILIDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYE 94 (338)
T ss_pred eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCChhHCCEEEEeCCccccCCCcHHH
Confidence 999999999999999999999999999999999999887 9999999999998776 489999999999999999999
Q ss_pred HHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCcccccCc
Q 001400 229 TLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGIS 308 (1085)
Q Consensus 229 ~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LS 308 (1085)
||.|+.+.++... .+.+.+++++.+.|+|++..|.. +++||
T Consensus 95 Niaf~Lk~~~~~k----------------------------------~ei~~rV~eva~~L~l~~lL~r~-----P~~LS 135 (338)
T COG3839 95 NIAFGLKLRGVPK----------------------------------AEIDKRVKEVAKLLGLEHLLNRK-----PLQLS 135 (338)
T ss_pred HhhhhhhhCCCch----------------------------------HHHHHHHHHHHHHcCChhHHhcC-----cccCC
Confidence 9999988764321 11245699999999999988865 45799
Q ss_pred hhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEecCCeEEE
Q 001400 309 GGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVY 388 (1085)
Q Consensus 309 GGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~~G~iv~ 388 (1085)
|||||||++||||+.+|++++||||+|.||+..+.++...++++.+.++ +++|.++|+..|+..++|+|++|++|++..
T Consensus 136 GGQrQRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~-~T~IYVTHDq~EAmtladri~Vm~~G~i~Q 214 (338)
T COG3839 136 GGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLG-TTTIYVTHDQVEAMTLADRIVVMNDGRIQQ 214 (338)
T ss_pred hhhHHHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcC-CcEEEEcCCHHHHHhhCCEEEEEeCCeeee
Confidence 9999999999999999999999999999999999999999999877664 556668999999999999999999999999
Q ss_pred ecChhhHHHHHHhCCCCCCCCCChhHHHH
Q 001400 389 QGPRVSVLDFFASMGFSCPKRKNVADFLQ 417 (1085)
Q Consensus 389 ~G~~~~~~~~f~~~G~~~p~~~~~adfl~ 417 (1085)
.|++.++ |..|.+.-+|.|+-
T Consensus 215 ~g~p~el--------y~~P~n~fVA~FiG 235 (338)
T COG3839 215 VGTPLEL--------YERPANLFVAGFIG 235 (338)
T ss_pred cCChHHH--------hhCccchhhhhhcC
Confidence 9999998 44677766777753
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-42 Score=379.39 Aligned_cols=223 Identities=31% Similarity=0.435 Sum_probs=196.9
Q ss_pred ceeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCC-CceEEEEccCCCCCCCCC
Q 001400 147 KLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP-PRTSAYVSQQDWQVAEMT 225 (1085)
Q Consensus 147 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lT 225 (1085)
+..+|+|+|+.|++||+++|+|||||||||||++|||+..|+ +|+|.++|.++....+ +|.+++|+|+-.+||+||
T Consensus 17 ~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~---~G~I~l~G~~i~~lpp~kR~ig~VFQ~YALFPHlt 93 (352)
T COG3842 17 DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPS---SGEILLDGEDITDVPPEKRPIGMVFQSYALFPHMT 93 (352)
T ss_pred CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCChhhcccceeecCcccCCCCc
Confidence 467999999999999999999999999999999999999887 9999999999988766 588999999999999999
Q ss_pred HHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCcccc
Q 001400 226 VRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLK 305 (1085)
Q Consensus 226 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 305 (1085)
|+||+.|+.+.+.... + .+.+.+++++|+.++|++.++.. +.
T Consensus 94 V~~NVafGLk~~~~~~-------------------~--------------~~i~~rv~e~L~lV~L~~~~~R~-----p~ 135 (352)
T COG3842 94 VEENVAFGLKVRKKLK-------------------K--------------AEIKARVEEALELVGLEGFADRK-----PH 135 (352)
T ss_pred HHHHhhhhhhhcCCCC-------------------H--------------HHHHHHHHHHHHHcCchhhhhhC-----hh
Confidence 9999999987432111 0 11234699999999999977754 45
Q ss_pred cCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEecCCe
Q 001400 306 GISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQ 385 (1085)
Q Consensus 306 ~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~~G~ 385 (1085)
+|||||+|||+|||||+.+|++|+||||.|+||..-+.++...|+++.+.. +.+.|.++|+..|++.++|||++|++|+
T Consensus 136 qLSGGQqQRVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~-giT~i~VTHDqeEAl~msDrI~Vm~~G~ 214 (352)
T COG3842 136 QLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQREL-GITFVYVTHDQEEALAMSDRIAVMNDGR 214 (352)
T ss_pred hhChHHHHHHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhc-CCeEEEEECCHHHHhhhccceEEccCCc
Confidence 799999999999999999999999999999999999999999999999887 4556668999999999999999999999
Q ss_pred EEEecChhhHHHHHHhCCCCCCCCCChhHHHHhh
Q 001400 386 IVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEV 419 (1085)
Q Consensus 386 iv~~G~~~~~~~~f~~~G~~~p~~~~~adfl~~v 419 (1085)
|...|+++++ |..|...-+|+|+-+.
T Consensus 215 I~Q~gtP~ei--------Y~~P~~~fVA~FiG~~ 240 (352)
T COG3842 215 IEQVGTPEEI--------YERPATRFVADFIGES 240 (352)
T ss_pred eeecCCHHHH--------hhCcchHHHHHHhCcc
Confidence 9999999998 4578777888887653
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-42 Score=360.02 Aligned_cols=222 Identities=31% Similarity=0.448 Sum_probs=188.6
Q ss_pred ceeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCc---cCCCCC-CCceEEEEccCCCCCC
Q 001400 147 KLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGH---GFKEFV-PPRTSAYVSQQDWQVA 222 (1085)
Q Consensus 147 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~---~~~~~~-~~~~~~yv~Q~d~~~~ 222 (1085)
...+++|||+.|+.||+++|+|||||||||||++|||+..|+ +|.|.+||. +.+... ..|.+|||+|+..+|+
T Consensus 14 ~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~---~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF~ 90 (345)
T COG1118 14 AFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPD---AGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFP 90 (345)
T ss_pred cccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCC---CceEEECCEeccchhccchhhcceeEEEechhhcc
Confidence 456899999999999999999999999999999999999887 999999999 555533 3489999999999999
Q ss_pred CCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCc
Q 001400 223 EMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDE 302 (1085)
Q Consensus 223 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 302 (1085)
+|||.+||.|+.+++... |+ ..+.+.+++++|+.+.|++.++ +
T Consensus 91 HmtVa~NIAFGl~~~~~~-------------------p~-------------~~~~r~rv~elL~lvqL~~la~-----r 133 (345)
T COG1118 91 HMTVADNIAFGLKVRKER-------------------PS-------------EAEIRARVEELLRLVQLEGLAD-----R 133 (345)
T ss_pred cchHHhhhhhcccccccC-------------------CC-------------hhhHHHHHHHHHHHhcccchhh-----c
Confidence 999999999998765110 00 1122446889999999988766 4
Q ss_pred ccccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEec
Q 001400 303 MLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLS 382 (1085)
Q Consensus 303 ~~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~ 382 (1085)
++.+|||||||||++||||+..|++|+||||+++||...+..+-+.|+++....+.|++ .++|+..|++++||+|++|+
T Consensus 134 yP~QLSGGQrQRVALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttv-fVTHD~eea~~ladrvvvl~ 212 (345)
T COG1118 134 YPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTV-FVTHDQEEALELADRVVVLN 212 (345)
T ss_pred CchhcChHHHHHHHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEE-EEeCCHHHHHhhcceEEEec
Confidence 56789999999999999999999999999999999999999999999999876655555 58899999999999999999
Q ss_pred CCeEEEecChhhHHHHHHhCCCCCCCCCChhHHHH
Q 001400 383 EGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQ 417 (1085)
Q Consensus 383 ~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~adfl~ 417 (1085)
+|+|...||+.++- ..|...-++.|+-
T Consensus 213 ~G~Ieqvg~p~ev~--------~~P~s~fV~~f~G 239 (345)
T COG1118 213 QGRIEQVGPPDEVY--------DHPASRFVARFLG 239 (345)
T ss_pred CCeeeeeCCHHHHh--------cCCCccceecccc
Confidence 99999999999984 3455444555543
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-41 Score=353.35 Aligned_cols=193 Identities=30% Similarity=0.450 Sum_probs=166.3
Q ss_pred eEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCCh------h-cccceEEEEccCCCCC
Q 001400 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ------E-TFARISGYCEQNDIHS 914 (1085)
Q Consensus 842 ~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~------~-~~~~~~gy~~Q~~~~~ 914 (1085)
..+|++|||+|++||++||||||||||||||++|.|... +.+|.+.++|.++.. . -+++.+||++|+..+.
T Consensus 18 ~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~--pt~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl 95 (226)
T COG1136 18 VEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDK--PTSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLL 95 (226)
T ss_pred eEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccC--CCCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCC
Confidence 689999999999999999999999999999999999877 468999999977542 1 2355799999999999
Q ss_pred CCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccc-cccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q 001400 915 PGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSG-ALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMD 993 (1085)
Q Consensus 915 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlD 993 (1085)
|.+||+||+.+...+... ........++++++.+++.+..+ .. +.+|||||||||+|||||+.+|+||+.|
T Consensus 96 ~~ltv~ENv~lpl~~~~~---~~~~~~~~~~~l~~~lgl~~~~~~~~-----p~eLSGGqqQRVAIARAL~~~P~iilAD 167 (226)
T COG1136 96 PDLTVLENVELPLLIAGK---SAGRRKRAAEELLEVLGLEDRLLKKK-----PSELSGGQQQRVAIARALINNPKIILAD 167 (226)
T ss_pred CCCCHHHHHHhHHHHcCC---ChhHHHHHHHHHHHhcCChhhhccCC-----chhcCHHHHHHHHHHHHHhcCCCeEEee
Confidence 999999999986544422 11245566788999999986655 33 3589999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHC-CceEEEEecCccHHHHHhcCEEEEEecCc
Q 001400 994 EPTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGG 1046 (1085)
Q Consensus 994 EPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~il~l~~gG 1046 (1085)
|||.+||.++.+.|+++++++.++ |+|||++|||+ .+...|||++.|++|+
T Consensus 168 EPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~--~lA~~~dr~i~l~dG~ 219 (226)
T COG1136 168 EPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDP--ELAKYADRVIELKDGK 219 (226)
T ss_pred CccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCH--HHHHhCCEEEEEeCCe
Confidence 999999999999999999999765 99999999997 4778999999999754
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-41 Score=375.39 Aligned_cols=212 Identities=32% Similarity=0.473 Sum_probs=185.3
Q ss_pred ceeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCC--CCCceEEEEccCCCCCCCC
Q 001400 147 KLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEF--VPPRTSAYVSQQDWQVAEM 224 (1085)
Q Consensus 147 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~--~~~~~~~yv~Q~d~~~~~l 224 (1085)
++.+|+|||+.|++|++++|+||||||||||||+|+|++.|+ +|+|.++|.+.... ..++.+||++|++.+++.+
T Consensus 17 ~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~---~G~i~i~G~~~~~~~~~~~~~igy~~~~~~~~~~l 93 (293)
T COG1131 17 DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPT---SGEILVLGYDVVKEPAKVRRRIGYVPQEPSLYPEL 93 (293)
T ss_pred CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEEcCEeCccCHHHHHhheEEEccCCCCCccc
Confidence 467999999999999999999999999999999999999886 99999999887552 3457899999999999999
Q ss_pred CHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCccc
Q 001400 225 TVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEML 304 (1085)
Q Consensus 225 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 304 (1085)
||+|||.|.+++.+.... ....+++++++.+||++..++ .+
T Consensus 94 T~~e~l~~~~~l~~~~~~----------------------------------~~~~~~~~~l~~~~L~~~~~~-----~~ 134 (293)
T COG1131 94 TVRENLEFFARLYGLSKE----------------------------------EAEERIEELLELFGLEDKANK-----KV 134 (293)
T ss_pred cHHHHHHHHHHHhCCChh----------------------------------HHHHHHHHHHHHcCCchhhCc-----ch
Confidence 999999999888754310 012358899999999985444 44
Q ss_pred ccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEecCC
Q 001400 305 KGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEG 384 (1085)
Q Consensus 305 ~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~~G 384 (1085)
++||+||||||+||.||+++|++|||||||+|||+.++.++++.|+++++. ++++|+..+|...++..+||+|++|++|
T Consensus 135 ~~lS~G~kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~-g~~tvlissH~l~e~~~~~d~v~il~~G 213 (293)
T COG1131 135 RTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKE-GGVTILLSTHILEEAEELCDRVIILNDG 213 (293)
T ss_pred hhcCHHHHHHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhC-CCcEEEEeCCcHHHHHHhCCEEEEEeCC
Confidence 679999999999999999999999999999999999999999999999875 4366666889999999999999999999
Q ss_pred eEEEecChhhHHHHHHh
Q 001400 385 QIVYQGPRVSVLDFFAS 401 (1085)
Q Consensus 385 ~iv~~G~~~~~~~~f~~ 401 (1085)
++++.|+.+++...+..
T Consensus 214 ~~~~~g~~~~l~~~~~~ 230 (293)
T COG1131 214 KIIAEGTPEELKEKFGG 230 (293)
T ss_pred EEEEeCCHHHHHHhhcc
Confidence 99999999887765543
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-41 Score=340.23 Aligned_cols=214 Identities=25% Similarity=0.339 Sum_probs=181.9
Q ss_pred ccccccCCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCC---CCCeeeeEEEEcCccCCh-----hcccceEE
Q 001400 834 QEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRK---TGGIIEGDIYISGYPKRQ-----ETFARISG 905 (1085)
Q Consensus 834 ~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~---~~~~~~G~i~i~g~~~~~-----~~~~~~~g 905 (1085)
++.+.|+.+++|+|||+.|++++++||+|||||||||||+++.+.. ++-..+|+|.++|.++.. ...|+.+|
T Consensus 12 ~l~~yYg~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~lRr~vG 91 (253)
T COG1117 12 DLNLYYGDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELRRRVG 91 (253)
T ss_pred ceeEEECchhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHHHHHhe
Confidence 3334457889999999999999999999999999999999999843 344678999999987643 45789999
Q ss_pred EEccCCCCCCCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcc-cccccCCCCCCCCCHHHHHHHHHHHHHh
Q 001400 906 YCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSL-SGALIGLPGINGLSTEQRKRLTIAVELV 984 (1085)
Q Consensus 906 y~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~~~~~~~~LS~Gqrqrl~iA~aL~ 984 (1085)
+|+|.|.-|| +|++||+.|+..+....+ ++.++.+++.++...|++- .|.+. .. ..+|||||+|||||||||+
T Consensus 92 MVFQkPnPFp-~SIydNVayG~r~~g~~~---~~ldeiVe~sLk~AaLWdEVKDrL~-~s-a~~LSGGQQQRLcIARalA 165 (253)
T COG1117 92 MVFQKPNPFP-MSIYDNVAYGLRLHGIKD---KELDEIVESSLKKAALWDEVKDRLH-KS-ALGLSGGQQQRLCIARALA 165 (253)
T ss_pred eeccCCCCCC-chHHHHHHHhHHhhccch---HHHHHHHHHHHHHhHhHHHhHHHhh-CC-ccCCChhHHHHHHHHHHHh
Confidence 9999999998 899999999987664433 5667889999999888754 33332 22 2469999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCCC
Q 001400 985 ANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGS 1056 (1085)
Q Consensus 985 ~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~~ 1056 (1085)
.+|+||+||||||+|||.+...|.++|.+++ +.-|||++||.+. ...+..|+..++.. |++++.|+..+
T Consensus 166 v~PeVlLmDEPtSALDPIsT~kIEeLi~eLk-~~yTIviVTHnmq-QAaRvSD~taFf~~-G~LvE~g~T~~ 234 (253)
T COG1117 166 VKPEVLLMDEPTSALDPISTLKIEELITELK-KKYTIVIVTHNMQ-QAARVSDYTAFFYL-GELVEFGPTDK 234 (253)
T ss_pred cCCcEEEecCcccccCchhHHHHHHHHHHHH-hccEEEEEeCCHH-HHHHHhHhhhhhcc-cEEEEEcCHHh
Confidence 9999999999999999999999999999996 5799999999986 57788999999985 69999998764
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-41 Score=358.76 Aligned_cols=211 Identities=32% Similarity=0.443 Sum_probs=180.8
Q ss_pred ceeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCC---CceEEEEccCCCCCCC
Q 001400 147 KLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP---PRTSAYVSQQDWQVAE 223 (1085)
Q Consensus 147 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~ 223 (1085)
++.||+|+|+.+++|++++|+||||||||||||+|+|.++|. +|+|.++|+++.+... .|.+|||||.....+.
T Consensus 14 ~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~---~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~ 90 (258)
T COG1120 14 GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPK---SGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFG 90 (258)
T ss_pred CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCC---CCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCC
Confidence 357999999999999999999999999999999999999887 9999999999877653 4789999999887888
Q ss_pred CCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCcc
Q 001400 224 MTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEM 303 (1085)
Q Consensus 224 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 303 (1085)
+||+|.+.++..-... .+ . ....+....+++.|+.+|+.+.++..+.
T Consensus 91 ~tV~d~V~~GR~p~~~--~~----------------~------------~~~~~D~~~v~~aL~~~~~~~la~r~~~--- 137 (258)
T COG1120 91 LTVYELVLLGRYPHLG--LF----------------G------------RPSKEDEEIVEEALELLGLEHLADRPVD--- 137 (258)
T ss_pred cEEeehHhhcCCcccc--cc----------------c------------CCCHhHHHHHHHHHHHhCcHHHhcCccc---
Confidence 9999999887432100 00 0 0001112358899999999999987764
Q ss_pred cccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEecC
Q 001400 304 LKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSE 383 (1085)
Q Consensus 304 ~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~~ 383 (1085)
.|||||||||.|||||+++|++|+||||||+||...+.++++.++++++.. +.++|+++|+...+..+||++++|++
T Consensus 138 --~LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~-~~tvv~vlHDlN~A~ryad~~i~lk~ 214 (258)
T COG1120 138 --ELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREK-GLTVVMVLHDLNLAARYADHLILLKD 214 (258)
T ss_pred --ccChhHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhc-CCEEEEEecCHHHHHHhCCEEEEEEC
Confidence 599999999999999999999999999999999999999999999999764 45566678999999999999999999
Q ss_pred CeEEEecChhhHH
Q 001400 384 GQIVYQGPRVSVL 396 (1085)
Q Consensus 384 G~iv~~G~~~~~~ 396 (1085)
|+++++|++++++
T Consensus 215 G~i~a~G~p~evl 227 (258)
T COG1120 215 GKIVAQGTPEEVL 227 (258)
T ss_pred CeEEeecCcchhc
Confidence 9999999998875
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-41 Score=352.91 Aligned_cols=206 Identities=28% Similarity=0.437 Sum_probs=175.8
Q ss_pred eecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCCCceEEEEccC---CCCCCCCC
Q 001400 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQ---DWQVAEMT 225 (1085)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~~~~~~yv~Q~---d~~~~~lT 225 (1085)
++|+|||+.+++|++++|+||||||||||+|+|.|++.|. +|+|.++|.+......+..+|||||. |+-|| +|
T Consensus 18 ~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~---~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP-~t 93 (254)
T COG1121 18 PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPS---SGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFP-IT 93 (254)
T ss_pred eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCC---cceEEEccccccccccCCeEEEcCcccccCCCCC-cC
Confidence 4999999999999999999999999999999999999887 99999999988776667789999994 56566 69
Q ss_pred HHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCcccc
Q 001400 226 VRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLK 305 (1085)
Q Consensus 226 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 305 (1085)
|+|.+..+..-+. ..... . ..+....++++|+.+||.+.+|..+|+
T Consensus 94 V~d~V~~g~~~~~--g~~~~---~-------------------------~~~d~~~v~~aL~~Vgm~~~~~r~i~~---- 139 (254)
T COG1121 94 VKDVVLLGRYGKK--GWFRR---L-------------------------NKKDKEKVDEALERVGMEDLRDRQIGE---- 139 (254)
T ss_pred HHHHHHccCcccc--ccccc---c-------------------------cHHHHHHHHHHHHHcCchhhhCCcccc----
Confidence 9999987632110 00000 0 011134599999999999999988875
Q ss_pred cCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEecCCe
Q 001400 306 GISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQ 385 (1085)
Q Consensus 306 ~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~~G~ 385 (1085)
|||||+|||-|||||+++|++|+|||||+|+|+.++..|++.|+++.++ +.+|++++|+...+.++||+|+.|+ ++
T Consensus 140 -LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e--g~tIl~vtHDL~~v~~~~D~vi~Ln-~~ 215 (254)
T COG1121 140 -LSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE--GKTVLMVTHDLGLVMAYFDRVICLN-RH 215 (254)
T ss_pred -cCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC--CCEEEEEeCCcHHhHhhCCEEEEEc-Ce
Confidence 9999999999999999999999999999999999999999999999876 4556668999999999999999995 67
Q ss_pred EEEecChhhHH
Q 001400 386 IVYQGPRVSVL 396 (1085)
Q Consensus 386 iv~~G~~~~~~ 396 (1085)
+++.|+++++.
T Consensus 216 ~~~~G~~~~~~ 226 (254)
T COG1121 216 LIASGPPEEVL 226 (254)
T ss_pred eEeccChhhcc
Confidence 89999998875
|
|
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-41 Score=336.01 Aligned_cols=207 Identities=27% Similarity=0.373 Sum_probs=184.8
Q ss_pred ccCCe-EEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCC--hhcccceEEEEccCCCCC
Q 001400 838 LEDRL-QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKR--QETFARISGYCEQNDIHS 914 (1085)
Q Consensus 838 ~~~~~-~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~--~~~~~~~~gy~~Q~~~~~ 914 (1085)
.|+.. ++++||||+++.||++||+|+|||||||+|++|+++.. |.+|.|+++|.+.. +...++.+|.++.+..++
T Consensus 10 ~y~~~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~--P~~G~v~idg~d~~~~p~~vrr~IGVl~~e~glY 87 (245)
T COG4555 10 SYGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLI--PDSGKVTIDGVDTVRDPSFVRRKIGVLFGERGLY 87 (245)
T ss_pred hccCHHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhcc--CCCceEEEeecccccChHHHhhhcceecCCcChh
Confidence 33433 48999999999999999999999999999999999877 56999999999864 345788999999888889
Q ss_pred CCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Q 001400 915 PGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDE 994 (1085)
Q Consensus 915 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDE 994 (1085)
..+|++||+.|.+.+. +....+.+++++++.+.++|.++.|..++ +||.|+||||+|||||+++|++++|||
T Consensus 88 ~RlT~rEnl~~Fa~L~---~l~~~~~kari~~l~k~l~l~~~~~rRv~-----~~S~G~kqkV~iARAlvh~P~i~vlDE 159 (245)
T COG4555 88 ARLTARENLKYFARLN---GLSRKEIKARIAELSKRLQLLEYLDRRVG-----EFSTGMKQKVAIARALVHDPSILVLDE 159 (245)
T ss_pred hhhhHHHHHHHHHHHh---hhhhhHHHHHHHHHHHHhChHHHHHHHHh-----hhchhhHHHHHHHHHHhcCCCeEEEcC
Confidence 9999999999988776 34456667889999999999999998874 799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCCC
Q 001400 995 PTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGS 1056 (1085)
Q Consensus 995 PtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~~ 1056 (1085)
||||||..+.+.+.+.++++.+.|++||++||.++ ++.+.||+++++++ |++++.|+...
T Consensus 160 P~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~-EvealCDrvivlh~-Gevv~~gs~~~ 219 (245)
T COG4555 160 PTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQ-EVEALCDRVIVLHK-GEVVLEGSIEA 219 (245)
T ss_pred CCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHH-HHHHhhheEEEEec-CcEEEcCCHHH
Confidence 99999999999999999999888999999999986 68889999999996 68999998754
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-41 Score=341.66 Aligned_cols=211 Identities=24% Similarity=0.341 Sum_probs=180.3
Q ss_pred cceeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCC------CCceEEEEccCCC
Q 001400 146 SKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV------PPRTSAYVSQQDW 219 (1085)
Q Consensus 146 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~------~~~~~~yv~Q~d~ 219 (1085)
.++.||+|||+.|++||+++|+|||||||||||++|.|++.|+ +|+|.+.|.++.... .++++|+++|+-.
T Consensus 19 G~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~---~GeI~i~G~~i~~ls~~~~~~ir~r~GvlFQ~gA 95 (263)
T COG1127 19 GDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPD---KGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGA 95 (263)
T ss_pred CCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCC---CCeEEEcCcchhccCHHHHHHHHhheeEEeeccc
Confidence 3467999999999999999999999999999999999999987 999999999886653 2467999999999
Q ss_pred CCCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccc
Q 001400 220 QVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLV 299 (1085)
Q Consensus 220 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~v 299 (1085)
+|..+||+||+.|..+-+.. .|+.. .+..+..-|+..||... +
T Consensus 96 LFssltV~eNVafplre~~~-------------------lp~~~--------------i~~lv~~KL~~VGL~~~----~ 138 (263)
T COG1127 96 LFSSLTVFENVAFPLREHTK-------------------LPESL--------------IRELVLMKLELVGLRGA----A 138 (263)
T ss_pred cccccchhHhhheehHhhcc-------------------CCHHH--------------HHHHHHHHHHhcCCChh----h
Confidence 99999999999997653211 11111 12235556788999765 2
Q ss_pred cCcccccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEE
Q 001400 300 GDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVI 379 (1085)
Q Consensus 300 g~~~~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii 379 (1085)
.+.++..||||++||+++|||++.+|+++|+||||+||||.++..+.++++++.+.++-| +++++|+.++++..+|+|+
T Consensus 139 ~~~~PsELSGGM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T-~i~VTHDl~s~~~i~Drv~ 217 (263)
T COG1127 139 ADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLT-VIMVTHDLDSLLTIADRVA 217 (263)
T ss_pred hhhCchhhcchHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCE-EEEEECChHHHHhhhceEE
Confidence 235667899999999999999999999999999999999999999999999999887655 4558899999999999999
Q ss_pred EecCCeEEEecChhhHHH
Q 001400 380 LLSEGQIVYQGPRVSVLD 397 (1085)
Q Consensus 380 ~L~~G~iv~~G~~~~~~~ 397 (1085)
+|.+|+|+.+|+++++.+
T Consensus 218 ~L~~gkv~~~Gt~~el~~ 235 (263)
T COG1127 218 VLADGKVIAEGTPEELLA 235 (263)
T ss_pred EEeCCEEEEeCCHHHHHh
Confidence 999999999999999864
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-41 Score=349.32 Aligned_cols=194 Identities=25% Similarity=0.376 Sum_probs=171.3
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCCCceEEEEccCCCCCCCCCHH
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVR 227 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 227 (1085)
..+|+|+|++|.+||+++|+|||||||||||++|+|+..|+ +|+|.++|.++ ..+...++||+|++.++|-+||+
T Consensus 16 ~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~---~G~V~~~g~~v--~~p~~~~~~vFQ~~~LlPW~Tv~ 90 (248)
T COG1116 16 VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPT---SGEVLLDGRPV--TGPGPDIGYVFQEDALLPWLTVL 90 (248)
T ss_pred eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCccc--CCCCCCEEEEeccCcccchhhHH
Confidence 57999999999999999999999999999999999999887 99999999987 34667899999999999999999
Q ss_pred HHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCcccccC
Q 001400 228 ETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGI 307 (1085)
Q Consensus 228 E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 307 (1085)
||+.|+....+... .+...+++++|+.+||.+..|.. +.+|
T Consensus 91 ~NV~l~l~~~~~~~----------------------------------~e~~~~a~~~L~~VgL~~~~~~~-----P~qL 131 (248)
T COG1116 91 DNVALGLELRGKSK----------------------------------AEARERAKELLELVGLAGFEDKY-----PHQL 131 (248)
T ss_pred hhheehhhccccch----------------------------------HhHHHHHHHHHHHcCCcchhhcC-----cccc
Confidence 99999887654211 01123588899999999988754 5679
Q ss_pred chhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEecC--Ce
Q 001400 308 SGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSE--GQ 385 (1085)
Q Consensus 308 SGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~~--G~ 385 (1085)
||||||||+|||||+.+|++|+||||+++||+.|+.++.+.|.++.+..+ .+++.++|+.+|+..++|||++|++ |+
T Consensus 132 SGGMrQRVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~-~TvllVTHdi~EAv~LsdRivvl~~~P~~ 210 (248)
T COG1116 132 SGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETR-KTVLLVTHDVDEAVYLADRVVVLSNRPGR 210 (248)
T ss_pred ChHHHHHHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhC-CEEEEEeCCHHHHHhhhCEEEEecCCCcc
Confidence 99999999999999999999999999999999999999999999887654 5566689999999999999999998 44
Q ss_pred E
Q 001400 386 I 386 (1085)
Q Consensus 386 i 386 (1085)
|
T Consensus 211 i 211 (248)
T COG1116 211 I 211 (248)
T ss_pred e
Confidence 4
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-41 Score=370.68 Aligned_cols=214 Identities=28% Similarity=0.370 Sum_probs=189.6
Q ss_pred cccccccccCCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCCh-hcccceEEEEcc
Q 001400 831 ELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ-ETFARISGYCEQ 909 (1085)
Q Consensus 831 ~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~-~~~~~~~gy~~Q 909 (1085)
+++++.+.+++..+|+|||++|+.||+++|+|||||||||||++|+|+.. +.+|+|.|+|.+.+. ....|.+|+|||
T Consensus 5 ~l~~v~K~yg~~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~--~~~G~I~i~g~~vt~l~P~~R~iamVFQ 82 (338)
T COG3839 5 ELKNVRKSFGSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEE--PTSGEILIDGRDVTDLPPEKRGIAMVFQ 82 (338)
T ss_pred EEeeeEEEcCCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEECCCCChhHCCEEEEeC
Confidence 34455555666559999999999999999999999999999999999887 579999999998775 345688999999
Q ss_pred CCCCCCCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCE
Q 001400 910 NDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSI 989 (1085)
Q Consensus 910 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~i 989 (1085)
+..++|++||+||+.|+..++. ...++.+++++++.+.+++.++.+... .+|||||||||+|||||+++|++
T Consensus 83 ~yALyPhmtV~~Niaf~Lk~~~---~~k~ei~~rV~eva~~L~l~~lL~r~P-----~~LSGGQrQRVAlaRAlVr~P~v 154 (338)
T COG3839 83 NYALYPHMTVYENIAFGLKLRG---VPKAEIDKRVKEVAKLLGLEHLLNRKP-----LQLSGGQRQRVALARALVRKPKV 154 (338)
T ss_pred CccccCCCcHHHHhhhhhhhCC---CchHHHHHHHHHHHHHcCChhHHhcCc-----ccCChhhHHHHHHHHHHhcCCCE
Confidence 9999999999999999987653 345667788999999999999988763 58999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHC-CceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCCC
Q 001400 990 VFMDEPTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGS 1056 (1085)
Q Consensus 990 lllDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~~ 1056 (1085)
++||||.|+||++.+..+...|+++.++ |.|+|.+|||.. +.+..+||+++|+ +|++...|...+
T Consensus 155 ~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~-EAmtladri~Vm~-~G~i~Q~g~p~e 220 (338)
T COG3839 155 FLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQV-EAMTLADRIVVMN-DGRIQQVGTPLE 220 (338)
T ss_pred EEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHH-HHHhhCCEEEEEe-CCeeeecCChHH
Confidence 9999999999999999999999998765 899999999974 7888999999998 689999887654
|
|
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-41 Score=331.64 Aligned_cols=207 Identities=29% Similarity=0.354 Sum_probs=183.3
Q ss_pred ceeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCC--CCCceEEEEccCCCCCCCC
Q 001400 147 KLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEF--VPPRTSAYVSQQDWQVAEM 224 (1085)
Q Consensus 147 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~--~~~~~~~yv~Q~d~~~~~l 224 (1085)
..++++||||.++.|++++|+|||||||||+|++|++++.|+ +|.|+++|.+.... ..++.+|.++.+..++..|
T Consensus 14 ~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~---~G~v~idg~d~~~~p~~vrr~IGVl~~e~glY~Rl 90 (245)
T COG4555 14 KVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPD---SGKVTIDGVDTVRDPSFVRRKIGVLFGERGLYARL 90 (245)
T ss_pred HHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCC---CceEEEeecccccChHHHhhhcceecCCcChhhhh
Confidence 445999999999999999999999999999999999999887 99999999987543 3468899999888889999
Q ss_pred CHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCccc
Q 001400 225 TVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEML 304 (1085)
Q Consensus 225 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 304 (1085)
|++|||.|.+++.+.. + .+.+.+++++.+.|+|..|.|+.+|+
T Consensus 91 T~rEnl~~Fa~L~~l~----------~------------------------~~~kari~~l~k~l~l~~~~~rRv~~--- 133 (245)
T COG4555 91 TARENLKYFARLNGLS----------R------------------------KEIKARIAELSKRLQLLEYLDRRVGE--- 133 (245)
T ss_pred hHHHHHHHHHHHhhhh----------h------------------------hHHHHHHHHHHHHhChHHHHHHHHhh---
Confidence 9999999988775422 1 12245689999999999999999874
Q ss_pred ccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEecCC
Q 001400 305 KGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEG 384 (1085)
Q Consensus 305 ~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~~G 384 (1085)
+|-|+||||+|||||+.+|+++++||||||||..+...+.+.++++... +.+|+..+|..+|+..+||+|++|++|
T Consensus 134 --~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~e--gr~viFSSH~m~EvealCDrvivlh~G 209 (245)
T COG4555 134 --FSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNE--GRAVIFSSHIMQEVEALCDRVIVLHKG 209 (245)
T ss_pred --hchhhHHHHHHHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcC--CcEEEEecccHHHHHHhhheEEEEecC
Confidence 9999999999999999999999999999999999999999999988653 456666789999999999999999999
Q ss_pred eEEEecChhhHHH
Q 001400 385 QIVYQGPRVSVLD 397 (1085)
Q Consensus 385 ~iv~~G~~~~~~~ 397 (1085)
++++.|+.+++.+
T Consensus 210 evv~~gs~~~l~~ 222 (245)
T COG4555 210 EVVLEGSIEALDA 222 (245)
T ss_pred cEEEcCCHHHHHH
Confidence 9999999988754
|
|
| >TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-40 Score=406.03 Aligned_cols=227 Identities=41% Similarity=0.692 Sum_probs=204.1
Q ss_pred CCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCC-eeeeEEEEcCccCChhcccceEEEEccCCCCCCCCC
Q 001400 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGG-IIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLT 918 (1085)
Q Consensus 840 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~-~~~G~i~i~g~~~~~~~~~~~~gy~~Q~~~~~~~~t 918 (1085)
+++.+|+|||++++|||++||+|||||||||||++|+|+.+++ ..+|+|.+||.+.....+++.+|||+|+|.+++.+|
T Consensus 36 ~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lT 115 (617)
T TIGR00955 36 PRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLT 115 (617)
T ss_pred CccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCc
Confidence 3567999999999999999999999999999999999986542 357999999998776667888999999999999999
Q ss_pred HHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCC-CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCC
Q 001400 919 VLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPG-INGLSTEQRKRLTIAVELVANPSIVFMDEPTS 997 (1085)
Q Consensus 919 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~-~~~LS~Gqrqrl~iA~aL~~~p~illlDEPts 997 (1085)
|+||+.|++.++.+.....+++++.++++++.+++.+.+|..++.++ ..+||||||||++||+||+.+|+||+|||||+
T Consensus 116 V~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPts 195 (617)
T TIGR00955 116 VREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTS 195 (617)
T ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCc
Confidence 99999999988877665666777789999999999999999887543 45799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCCCchHHHHHHHHhccccc
Q 001400 998 GLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGSKSCELIKYFEVESFMF 1072 (1085)
Q Consensus 998 gLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~~~~~~~~~~~~~~~g~~ 1072 (1085)
|||+.++..+++.|++++++|+|||+++|||+.++++.||++++|+ +|+++|.|+. +++.+||+++ |-+
T Consensus 196 gLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~-~G~~v~~G~~----~~~~~~f~~~-g~~ 264 (617)
T TIGR00955 196 GLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMA-EGRVAYLGSP----DQAVPFFSDL-GHP 264 (617)
T ss_pred chhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEee-CCeEEEECCH----HHHHHHHHHc-CCC
Confidence 9999999999999999988899999999999877899999999998 5799999995 5789999998 544
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-41 Score=371.77 Aligned_cols=215 Identities=26% Similarity=0.382 Sum_probs=190.2
Q ss_pred cccccccccCCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCCh-hcccceEEEEcc
Q 001400 831 ELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ-ETFARISGYCEQ 909 (1085)
Q Consensus 831 ~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~-~~~~~~~gy~~Q 909 (1085)
+++++.+.+++..+|+|||++|++||+++|+|||||||||||++|+|... +.+|+|.++|.++.. ...+|.+|+|||
T Consensus 7 ~i~~v~k~yg~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~--p~~G~I~l~G~~i~~lpp~kR~ig~VFQ 84 (352)
T COG3842 7 EIRNVSKSFGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQ--PSSGEILLDGEDITDVPPEKRPIGMVFQ 84 (352)
T ss_pred EEEeeeeecCCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEECCCCChhhcccceeec
Confidence 44556667788999999999999999999999999999999999999887 569999999998765 345788999999
Q ss_pred CCCCCCCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCE
Q 001400 910 NDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSI 989 (1085)
Q Consensus 910 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~i 989 (1085)
+..+||++||+||+.|+..++. ....++.++++++++++++|.++.+... .+|||||||||+|||||+.+|++
T Consensus 85 ~YALFPHltV~~NVafGLk~~~--~~~~~~i~~rv~e~L~lV~L~~~~~R~p-----~qLSGGQqQRVALARAL~~~P~v 157 (352)
T COG3842 85 SYALFPHMTVEENVAFGLKVRK--KLKKAEIKARVEEALELVGLEGFADRKP-----HQLSGGQQQRVALARALVPEPKV 157 (352)
T ss_pred CcccCCCCcHHHHhhhhhhhcC--CCCHHHHHHHHHHHHHHcCchhhhhhCh-----hhhChHHHHHHHHHHHhhcCcch
Confidence 9999999999999999976432 2344556778999999999999887753 58999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHH-CCceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCCC
Q 001400 990 VFMDEPTSGLDARAAAIVMRTVRNIVN-TGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGS 1056 (1085)
Q Consensus 990 lllDEPtsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~~ 1056 (1085)
|+||||.|+||..-+..+...++++.+ .|.|.|++|||.+ +.+..+|||.+|++ |+++..|+..+
T Consensus 158 LLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqe-EAl~msDrI~Vm~~-G~I~Q~gtP~e 223 (352)
T COG3842 158 LLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQE-EALAMSDRIAVMND-GRIEQVGTPEE 223 (352)
T ss_pred hhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHH-HHhhhccceEEccC-CceeecCCHHH
Confidence 999999999999999999999999975 4999999999986 68889999999984 79998887764
|
|
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-40 Score=325.20 Aligned_cols=201 Identities=27% Similarity=0.352 Sum_probs=173.8
Q ss_pred eEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCCh------hcccceEEEEccCCCCCC
Q 001400 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ------ETFARISGYCEQNDIHSP 915 (1085)
Q Consensus 842 ~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~------~~~~~~~gy~~Q~~~~~~ 915 (1085)
..+|+||||+|++||++-|+||||||||||||+|.+... +..|+|.++|+++.. .-.+|+||+|+|+.-+.+
T Consensus 15 ~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~--pt~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~ 92 (223)
T COG2884 15 REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEER--PTRGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLP 92 (223)
T ss_pred chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhc--CCCceEEECCeecccccccccchhhheeeeEeeeccccc
Confidence 569999999999999999999999999999999999766 568999999998643 236789999999999999
Q ss_pred CCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCC
Q 001400 916 GLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEP 995 (1085)
Q Consensus 916 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEP 995 (1085)
..||+||+.|...... ....+.++.+.++++.+||.+..+.+. .+||||||||++||||++.+|++|+.|||
T Consensus 93 ~~tvyeNVA~pL~v~G---~~~~~i~~rV~~~L~~VgL~~k~~~lP-----~~LSGGEQQRvaIARAiV~~P~vLlADEP 164 (223)
T COG2884 93 DRTVYENVALPLRVIG---KPPREIRRRVSEVLDLVGLKHKARALP-----SQLSGGEQQRVAIARAIVNQPAVLLADEP 164 (223)
T ss_pred cchHhhhhhhhhhccC---CCHHHHHHHHHHHHHHhccchhhhcCc-----cccCchHHHHHHHHHHHccCCCeEeecCC
Confidence 9999999999865543 344566678899999999988877653 58999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCC
Q 001400 996 TSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1085)
Q Consensus 996 tsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~ 1054 (1085)
|.+|||.....||+++.++...|.|||+.|||.++ +...-.|++.+.+ |+++.+...
T Consensus 165 TGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~l-v~~~~~rvl~l~~-Grl~~d~~~ 221 (223)
T COG2884 165 TGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLEL-VNRMRHRVLALED-GRLVRDESR 221 (223)
T ss_pred CCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHH-HHhccCcEEEEeC-CEEEecccc
Confidence 99999999999999999998889999999999653 4444468888875 688776543
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-40 Score=336.25 Aligned_cols=216 Identities=25% Similarity=0.356 Sum_probs=180.8
Q ss_pred ceeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCC------CCceEEEEccCCCC
Q 001400 147 KLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV------PPRTSAYVSQQDWQ 220 (1085)
Q Consensus 147 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~------~~~~~~yv~Q~d~~ 220 (1085)
.+++|+|||+.|++|||++|+|||||||||||++|.|+.++. +|+|.+||.++.... .++.+||++|+..+
T Consensus 16 ~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t---~G~i~~~g~~i~~~~~k~lr~~r~~iGmIfQ~~nL 92 (258)
T COG3638 16 GHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPT---SGEILFNGVQITKLKGKELRKLRRDIGMIFQQFNL 92 (258)
T ss_pred CceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCC---cceEEecccchhccchHHHHHHHHhceeEeccCCc
Confidence 457999999999999999999999999999999999988776 999999998776543 24789999999999
Q ss_pred CCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCccccccccc
Q 001400 221 VAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVG 300 (1085)
Q Consensus 221 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 300 (1085)
.+.+||.+|+..+..-+ .+.+ ....+..+..| +.+.-+.|+.+||.+.+-+..+
T Consensus 93 v~r~sv~~NVl~grl~~--~s~~---------~slfglfsk~d---------------k~~Al~aLervgi~~~A~qra~ 146 (258)
T COG3638 93 VPRLSVLENVLLGRLGY--TSTW---------RSLFGLFSKED---------------KAQALDALERVGILDKAYQRAS 146 (258)
T ss_pred ccccHHHHHHHhhhccc--chHH---------HHHhCCCCHHH---------------HHHHHHHHHHcCcHHHHHHHhc
Confidence 99999999998864321 1111 11122222222 3346678999999988877665
Q ss_pred CcccccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEE
Q 001400 301 DEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVIL 380 (1085)
Q Consensus 301 ~~~~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~ 380 (1085)
+|||||+|||+|||||+.+|++++-|||+++||+.++.++++.|++++...|.|+|+ .+|..+-+.++||||+-
T Consensus 147 -----~LSGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~-nLH~vdlA~~Y~~Riig 220 (258)
T COG3638 147 -----TLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIV-NLHQVDLAKKYADRIIG 220 (258)
T ss_pred -----cCCcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEE-EechHHHHHHHHhhheE
Confidence 599999999999999999999999999999999999999999999999876556555 56778999999999999
Q ss_pred ecCCeEEEecChhhHHH
Q 001400 381 LSEGQIVYQGPRVSVLD 397 (1085)
Q Consensus 381 L~~G~iv~~G~~~~~~~ 397 (1085)
|++|+|+|.||++++.+
T Consensus 221 l~~G~ivfDg~~~el~~ 237 (258)
T COG3638 221 LKAGRIVFDGPASELTD 237 (258)
T ss_pred ecCCcEEEeCChhhhhH
Confidence 99999999999988654
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-40 Score=330.81 Aligned_cols=221 Identities=25% Similarity=0.375 Sum_probs=180.7
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhC--CCCceeeEEEECCccCCCC-----CCCceEEEEccCCCC
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLG--HHLQVSGKITYNGHGFKEF-----VPPRTSAYVSQQDWQ 220 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~--~~~~~~G~i~~~G~~~~~~-----~~~~~~~yv~Q~d~~ 220 (1085)
+.+|+|||+.|+++++||++|||||||||||++|....+ +..+++|+|.|+|+++.+. ..++.+|+|+|.|.-
T Consensus 20 ~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~lRr~vGMVFQkPnP 99 (253)
T COG1117 20 KHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPNP 99 (253)
T ss_pred hhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHHHHHheeeccCCCC
Confidence 469999999999999999999999999999999987643 3557899999999987554 246899999999999
Q ss_pred CCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcc-cccccc
Q 001400 221 VAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDT-CADTLV 299 (1085)
Q Consensus 221 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~-~~dt~v 299 (1085)
|| +|++||+.|+.+.+|... +.+ +.+|+..|+.-+|-+ ..|.+
T Consensus 100 Fp-~SIydNVayG~r~~g~~~--~~l--------------------------------deiVe~sLk~AaLWdEVKDrL- 143 (253)
T COG1117 100 FP-MSIYDNVAYGLRLHGIKD--KEL--------------------------------DEIVESSLKKAALWDEVKDRL- 143 (253)
T ss_pred CC-chHHHHHHHhHHhhccch--HHH--------------------------------HHHHHHHHHHhHhHHHhHHHh-
Confidence 99 899999999999886533 111 123444444444432 22222
Q ss_pred cCcccccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEE
Q 001400 300 GDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVI 379 (1085)
Q Consensus 300 g~~~~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii 379 (1085)
++...+|||||+||++|||||+-+|+||+||||||+|||.++..|-+++.++.+ .-+|++++|...++....|+..
T Consensus 144 -~~sa~~LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~---~yTIviVTHnmqQAaRvSD~ta 219 (253)
T COG1117 144 -HKSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKK---KYTIVIVTHNMQQAARVSDYTA 219 (253)
T ss_pred -hCCccCCChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHh---ccEEEEEeCCHHHHHHHhHhhh
Confidence 123457999999999999999999999999999999999999999999999875 3456668999999999999999
Q ss_pred EecCCeEEEecChhhHHHHHHhCCCCCCCCCChhHHH
Q 001400 380 LLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFL 416 (1085)
Q Consensus 380 ~L~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~adfl 416 (1085)
.+..|+++++|+.+++ |..|.++.+.||+
T Consensus 220 Ff~~G~LvE~g~T~~i--------F~~P~~~~TedYi 248 (253)
T COG1117 220 FFYLGELVEFGPTDKI--------FTNPKHKRTEDYI 248 (253)
T ss_pred hhcccEEEEEcCHHhh--------hcCccHHHHHHHh
Confidence 9999999999999887 4467776666665
|
|
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-39 Score=364.71 Aligned_cols=209 Identities=28% Similarity=0.371 Sum_probs=179.2
Q ss_pred cccccCCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCCh--hcccceEEEEccCCC
Q 001400 835 EGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ--ETFARISGYCEQNDI 912 (1085)
Q Consensus 835 ~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~--~~~~~~~gy~~Q~~~ 912 (1085)
+++.+++..+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.++|+++.. ...++.+||++|++.
T Consensus 13 l~k~~~~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~--p~~G~v~i~G~~~~~~~~~~~~~ig~v~q~~~ 90 (306)
T PRK13537 13 VEKRYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTH--PDAGSISLCGEPVPSRARHARQRVGVVPQFDN 90 (306)
T ss_pred EEEEECCeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEecccchHHHHhcEEEEeccCc
Confidence 3334456789999999999999999999999999999999999876 568999999998643 345678999999999
Q ss_pred CCCCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q 001400 913 HSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFM 992 (1085)
Q Consensus 913 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illl 992 (1085)
+++.+|++||+.|.+.++. ....+....++++++.+++.+..+..+ .+||+|||||++||+||+.+|++|||
T Consensus 91 ~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~la~aL~~~P~lllL 162 (306)
T PRK13537 91 LDPDFTVRENLLVFGRYFG---LSAAAARALVPPLLEFAKLENKADAKV-----GELSGGMKRRLTLARALVNDPDVLVL 162 (306)
T ss_pred CCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchHhcCch-----hhCCHHHHHHHHHHHHHhCCCCEEEE
Confidence 9999999999987665432 222333456788999999987776654 47999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCC
Q 001400 993 DEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1085)
Q Consensus 993 DEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~ 1055 (1085)
||||+|||+.++..+++.|++++++|+|||++||+++ ++.+.||++++|++ |++++.|+..
T Consensus 163 DEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~-e~~~~~d~i~il~~-G~i~~~g~~~ 223 (306)
T PRK13537 163 DEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFME-EAERLCDRLCVIEE-GRKIAEGAPH 223 (306)
T ss_pred eCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEECCHH
Confidence 9999999999999999999999877999999999987 57788999999985 7899998754
|
|
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-40 Score=326.93 Aligned_cols=215 Identities=21% Similarity=0.324 Sum_probs=188.7
Q ss_pred ccccccccCCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCCh----hcccceEEEE
Q 001400 832 LKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ----ETFARISGYC 907 (1085)
Q Consensus 832 ~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~----~~~~~~~gy~ 907 (1085)
.+++.+.|++++++++||++|++||++||+|||||||||.+.++.|... +.+|.|.+||.+++. ...+..+||+
T Consensus 7 a~~l~K~y~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~--~d~G~i~ld~~diT~lPm~~RArlGigYL 84 (243)
T COG1137 7 AENLAKSYKKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVR--PDSGKILLDDEDITKLPMHKRARLGIGYL 84 (243)
T ss_pred ehhhhHhhCCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEe--cCCceEEECCcccccCChHHHhhcCcccc
Confidence 4556677889999999999999999999999999999999999999877 568999999998764 2334569999
Q ss_pred ccCCCCCCCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCC
Q 001400 908 EQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANP 987 (1085)
Q Consensus 908 ~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p 987 (1085)
||++..|..+||+||++.-...+.. +....+++..++++++.+++.++++... ..||||||+|+.|||||+.+|
T Consensus 85 pQE~SIFr~LtV~dNi~~vlE~~~~-d~~~~~~~~~l~~LL~ef~i~hlr~~~a-----~sLSGGERRR~EIARaLa~~P 158 (243)
T COG1137 85 PQEASIFRKLTVEDNIMAVLEIREK-DLKKAERKEELDALLEEFHITHLRDSKA-----YSLSGGERRRVEIARALAANP 158 (243)
T ss_pred cccchHhhcCcHHHHHHHHHhhhhc-chhHHHHHHHHHHHHHHhchHHHhcCcc-----cccccchHHHHHHHHHHhcCC
Confidence 9999999999999999866555532 2233456667889999999999988753 479999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCCC
Q 001400 988 SIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGS 1056 (1085)
Q Consensus 988 ~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~~ 1056 (1085)
+.++||||++|+||-+...|+++++.++++|..|++|-|... +....|||.+++.+ |++.+.|...+
T Consensus 159 ~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVR-EtL~i~dRaYIi~~-G~vla~G~p~e 225 (243)
T COG1137 159 KFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVR-ETLDICDRAYIISD-GKVLAEGSPEE 225 (243)
T ss_pred CEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHH-HHHhhhheEEEEec-CeEEecCCHHH
Confidence 999999999999999999999999999999999999999987 78899999999985 79999998765
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-39 Score=338.61 Aligned_cols=196 Identities=27% Similarity=0.429 Sum_probs=166.9
Q ss_pred ceeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCC-------CceEEEEccCCC
Q 001400 147 KLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP-------PRTSAYVSQQDW 219 (1085)
Q Consensus 147 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~-------~~~~~yv~Q~d~ 219 (1085)
..++|+++|+.|++||+++|+|||||||||||++|+|+..|+ +|.|.++|.++..... ++.+|||+|+..
T Consensus 17 ~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt---~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~n 93 (226)
T COG1136 17 KVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPT---SGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFN 93 (226)
T ss_pred ceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCC---CceEEECCEEcCcCCHHHHHHHHHHhEEEECccCC
Confidence 368999999999999999999999999999999999998876 9999999988876532 367999999999
Q ss_pred CCCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCccccc-cc
Q 001400 220 QVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCAD-TL 298 (1085)
Q Consensus 220 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~d-t~ 298 (1085)
++|++||+||+..+....+.... .....++.+++.+||.+..+ ..
T Consensus 94 Ll~~ltv~ENv~lpl~~~~~~~~----------------------------------~~~~~~~~l~~~lgl~~~~~~~~ 139 (226)
T COG1136 94 LLPDLTVLENVELPLLIAGKSAG----------------------------------RRKRAAEELLEVLGLEDRLLKKK 139 (226)
T ss_pred CCCCCCHHHHHHhHHHHcCCChh----------------------------------HHHHHHHHHHHhcCChhhhccCC
Confidence 99999999999987665543211 01234788899999987655 43
Q ss_pred ccCcccccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeE
Q 001400 299 VGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDV 378 (1085)
Q Consensus 299 vg~~~~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i 378 (1085)
+..|||||||||+|||||+.+|++++.||||.+||+.++..|++.++++++.. ++++++++|+ +++...|||+
T Consensus 140 -----p~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~-g~tii~VTHd-~~lA~~~dr~ 212 (226)
T COG1136 140 -----PSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKER-GKTIIMVTHD-PELAKYADRV 212 (226)
T ss_pred -----chhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhc-CCEEEEEcCC-HHHHHhCCEE
Confidence 45699999999999999999999999999999999999999999999998765 4555557676 5677899999
Q ss_pred EEecCCeE
Q 001400 379 ILLSEGQI 386 (1085)
Q Consensus 379 i~L~~G~i 386 (1085)
+.|.+|++
T Consensus 213 i~l~dG~~ 220 (226)
T COG1136 213 IELKDGKI 220 (226)
T ss_pred EEEeCCee
Confidence 99999994
|
|
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-39 Score=361.95 Aligned_cols=206 Identities=22% Similarity=0.335 Sum_probs=177.7
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCC------CceEEEEccCCCCC
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP------PRTSAYVSQQDWQV 221 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~------~~~~~yv~Q~d~~~ 221 (1085)
+++|+|+|++|++|++++|+||||||||||+++|+|+++|+ +|+|.++|.++..... ++.++|++|+..++
T Consensus 18 ~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~---~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~ 94 (343)
T TIGR02314 18 IQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT---SGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLL 94 (343)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHHHHHHHhcCEEEEECCcccc
Confidence 46999999999999999999999999999999999999876 9999999998865432 46799999999999
Q ss_pred CCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccC
Q 001400 222 AEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGD 301 (1085)
Q Consensus 222 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 301 (1085)
+.+||+||+.|+....+... .+...++.++++.+||.+..|..+
T Consensus 95 ~~~tv~eni~~~~~~~~~~~----------------------------------~~~~~~v~e~l~~vgL~~~~~~~~-- 138 (343)
T TIGR02314 95 SSRTVFGNVALPLELDNTPK----------------------------------DEIKRKVTELLALVGLGDKHDSYP-- 138 (343)
T ss_pred ccCcHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhhCCh--
Confidence 99999999998654332100 001234778999999998777654
Q ss_pred cccccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEe
Q 001400 302 EMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILL 381 (1085)
Q Consensus 302 ~~~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L 381 (1085)
..|||||||||+|||||+.+|++|+|||||||||+.++..+.+.|+++.+..+ .+|+.++|..+.+.++||+|++|
T Consensus 139 ---~~LSgGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g-~tiiliTH~~~~v~~~~d~v~vl 214 (343)
T TIGR02314 139 ---SNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLG-LTILLITHEMDVVKRICDCVAVI 214 (343)
T ss_pred ---hhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC-CEEEEEeCCHHHHHHhCCEEEEE
Confidence 56999999999999999999999999999999999999999999999987544 45556889999999999999999
Q ss_pred cCCeEEEecChhhHH
Q 001400 382 SEGQIVYQGPRVSVL 396 (1085)
Q Consensus 382 ~~G~iv~~G~~~~~~ 396 (1085)
++|++++.|+.+++.
T Consensus 215 ~~G~iv~~g~~~~v~ 229 (343)
T TIGR02314 215 SNGELIEQGTVSEIF 229 (343)
T ss_pred ECCEEEEEcCHHHHH
Confidence 999999999988874
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-39 Score=362.48 Aligned_cols=202 Identities=26% Similarity=0.323 Sum_probs=175.4
Q ss_pred eEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCChh------cccceEEEEccCCCCCC
Q 001400 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE------TFARISGYCEQNDIHSP 915 (1085)
Q Consensus 842 ~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~------~~~~~~gy~~Q~~~~~~ 915 (1085)
..+|+||||+|++||++||+|+||||||||+++|+|..+ +.+|+|.++|.++... ..++.+||++|+..+++
T Consensus 18 ~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~--p~~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~~ 95 (343)
T TIGR02314 18 IQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER--PTSGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLS 95 (343)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEECCcCCHHHHHHHhcCEEEEECCccccc
Confidence 579999999999999999999999999999999999876 5689999999876431 24668999999999999
Q ss_pred CCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCC
Q 001400 916 GLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEP 995 (1085)
Q Consensus 916 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEP 995 (1085)
..||+||+.|...... ....+.++.+.++++.+++.+..+... .+||||||||++|||||+.+|++|+||||
T Consensus 96 ~~tv~eni~~~~~~~~---~~~~~~~~~v~e~l~~vgL~~~~~~~~-----~~LSgGqkQRV~IARAL~~~P~iLLlDEP 167 (343)
T TIGR02314 96 SRTVFGNVALPLELDN---TPKDEIKRKVTELLALVGLGDKHDSYP-----SNLSGGQKQRVAIARALASNPKVLLCDEA 167 (343)
T ss_pred cCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCC
Confidence 9999999998754321 233445567889999999988777653 57999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHC-CceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCC
Q 001400 996 TSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1085)
Q Consensus 996 tsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~ 1055 (1085)
||+||+.++..+++.|+++.++ |.|||++||+++ .+.+.||++++|+ +|++++.|+..
T Consensus 168 ts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~-~v~~~~d~v~vl~-~G~iv~~g~~~ 226 (343)
T TIGR02314 168 TSALDPATTQSILELLKEINRRLGLTILLITHEMD-VVKRICDCVAVIS-NGELIEQGTVS 226 (343)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEEEcCHH
Confidence 9999999999999999999765 999999999986 4778899999998 47999998754
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-39 Score=357.22 Aligned_cols=186 Identities=22% Similarity=0.214 Sum_probs=139.3
Q ss_pred EEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCChhcccceEEEEccCCCCCCCCCHHHH
Q 001400 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLES 922 (1085)
Q Consensus 843 ~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gy~~Q~~~~~~~~tv~e~ 922 (1085)
+++.++++.+..-..++++|+||+||||+++++.|..+ +..|-+.+.+ +++++|..|...-+..+.|-+-
T Consensus 378 ~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~--~~rgi~~~~~--------r~ri~~f~Qhhvd~l~~~v~~v 447 (582)
T KOG0062|consen 378 QWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLT--PTRGIVGRHP--------RLRIKYFAQHHVDFLDKNVNAV 447 (582)
T ss_pred hhhhccCCccchhhhhheeccCchhHHHHHHHHhccCC--cccceeeecc--------cceecchhHhhhhHHHHHhHHH
Confidence 67889999999999999999999999999999998654 3567666654 4678999997554433333332
Q ss_pred HHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHH
Q 001400 923 LLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDAR 1002 (1085)
Q Consensus 923 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEPtsgLD~~ 1002 (1085)
- +-...+ | .. ..+.+++-+..+|+..-. ...+ +.+||||||-||++|.....+|.+|+|||||+.||..
T Consensus 448 d-~~~~~~-p-G~----~~ee~r~hl~~~Gl~g~l---a~~s-i~~LSGGQKsrvafA~~~~~~PhlLVLDEPTNhLD~d 516 (582)
T KOG0062|consen 448 D-FMEKSF-P-GK----TEEEIRRHLGSFGLSGEL---ALQS-IASLSGGQKSRVAFAACTWNNPHLLVLDEPTNHLDRD 516 (582)
T ss_pred H-HHHHhC-C-CC----CHHHHHHHHHhcCCCchh---hhcc-ccccCCcchhHHHHHHHhcCCCcEEEecCCCccccHH
Confidence 2 111111 1 11 123355667777776422 2112 4679999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEecCcEEEEecC
Q 001400 1003 AAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGP 1053 (1085)
Q Consensus 1003 ~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~ 1053 (1085)
+-..+-++|+++ +..|||||||.++ +-..|+++++.++|...-..|.
T Consensus 517 sl~AL~~Al~~F---~GGVv~VSHd~~f-i~~~c~E~Wvve~g~vt~ieg~ 563 (582)
T KOG0062|consen 517 SLGALAKALKNF---NGGVVLVSHDEEF-ISSLCKELWVVEDGKVTPIEGG 563 (582)
T ss_pred HHHHHHHHHHhc---CCcEEEEECcHHH-HhhcCceeEEEcCCcEEeeecc
Confidence 999999999885 5689999999764 6778999999997654445554
|
|
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-39 Score=331.53 Aligned_cols=225 Identities=28% Similarity=0.388 Sum_probs=190.5
Q ss_pred cccccccccCCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCCh----hcccceEEE
Q 001400 831 ELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ----ETFARISGY 906 (1085)
Q Consensus 831 ~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~----~~~~~~~gy 906 (1085)
+.+++++.++...+++||||++++||++||+||||||||||+|+|+|..+ +.+|+|.++|.++.. +..+..++.
T Consensus 6 ~v~~l~k~FGGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~--P~~G~v~~~G~~it~l~p~~iar~Gi~R 83 (250)
T COG0411 6 EVRGLSKRFGGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYK--PSSGTVIFRGRDITGLPPHRIARLGIAR 83 (250)
T ss_pred eeccceeecCCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeeccccc--CCCceEEECCcccCCCCHHHHHhcccee
Confidence 34556667788999999999999999999999999999999999999877 568999999998753 234556889
Q ss_pred EccCCCCCCCCCHHHHHHHhhhhc--------CCCc-ccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHH
Q 001400 907 CEQNDIHSPGLTVLESLLFSAWLR--------LPSE-IELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRL 977 (1085)
Q Consensus 907 ~~Q~~~~~~~~tv~e~l~~~~~~~--------~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl 977 (1085)
-||...+|+++||.||++.++..+ .+.. ....+..+.+.++++.++|.+.++...+ +||+||||||
T Consensus 84 TFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~-----~LsyG~qR~L 158 (250)
T COG0411 84 TFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAG-----NLSYGQQRRL 158 (250)
T ss_pred ecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhh-----cCChhHhHHH
Confidence 999999999999999998875422 1111 1234556778899999999999988763 7999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCCC
Q 001400 978 TIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVN-TGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGS 1056 (1085)
Q Consensus 978 ~iA~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~~ 1056 (1085)
.|||||+.+|++|+||||.+||.+.....+.+.|+++.+ .|.||++|-||++. ++..|||++||+. |++++.|+..+
T Consensus 159 EIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~-Vm~l~dri~Vl~~-G~~IAeG~P~e 236 (250)
T COG0411 159 EIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKL-VMGLADRIVVLNY-GEVIAEGTPEE 236 (250)
T ss_pred HHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHH-HhhhccEEEeccC-CcCcccCCHHH
Confidence 999999999999999999999999999999999999987 47999999999985 8999999999985 79999998765
Q ss_pred --chHHHHHH
Q 001400 1057 --KSCELIKY 1064 (1085)
Q Consensus 1057 --~~~~~~~~ 1064 (1085)
+...+++-
T Consensus 237 V~~dp~VieA 246 (250)
T COG0411 237 VRNNPRVIEA 246 (250)
T ss_pred HhcCHHhHHH
Confidence 23344443
|
|
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-39 Score=331.94 Aligned_cols=200 Identities=27% Similarity=0.373 Sum_probs=168.8
Q ss_pred EEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCChh----cccceEEEEccCCC--CCCC
Q 001400 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE----TFARISGYCEQNDI--HSPG 916 (1085)
Q Consensus 843 ~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~----~~~~~~gy~~Q~~~--~~~~ 916 (1085)
.+|+||||+|.+||++||+|+||||||||.++|+|... +.+|+|.++|.+.... .+.+.+.+|||+|. +-|.
T Consensus 21 ~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~--p~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~ 98 (252)
T COG1124 21 HALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEK--PSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPR 98 (252)
T ss_pred hhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccC--CCCceEEECCcccCccccchhhccceeEEecCCccccCcc
Confidence 49999999999999999999999999999999999877 5689999999875432 46788999999986 4588
Q ss_pred CCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcc-cccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCC
Q 001400 917 LTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSL-SGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEP 995 (1085)
Q Consensus 917 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEP 995 (1085)
.||.+.|.-.... ......+ +.+.++++.+||.+- .+.. +.+||||||||+||||||+.+|++||+|||
T Consensus 99 ~tv~~~l~Epl~~---~~~~~~~--~~i~~~L~~VgL~~~~l~R~-----P~eLSGGQ~QRiaIARAL~~~PklLIlDEp 168 (252)
T COG1124 99 RTVGRILSEPLRP---HGLSKSQ--QRIAELLDQVGLPPSFLDRR-----PHELSGGQRQRIAIARALIPEPKLLILDEP 168 (252)
T ss_pred hhHHHHHhhhhcc---CCccHHH--HHHHHHHHHcCCCHHHHhcC-----chhcChhHHHHHHHHHHhccCCCEEEecCc
Confidence 9999988654332 1222222 238899999999653 2322 357999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHH-CCceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCCC
Q 001400 996 TSGLDARAAAIVMRTVRNIVN-TGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGS 1056 (1085)
Q Consensus 996 tsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~~ 1056 (1085)
||+||+..++.|++++.++.+ .+.|.|+||||.+. +...|||+++|++ |++++.++.++
T Consensus 169 tSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~-v~~~cdRi~Vm~~-G~ivE~~~~~~ 228 (252)
T COG1124 169 TSALDVSVQAQILNLLLELKKERGLTYLFISHDLAL-VEHMCDRIAVMDN-GQIVEIGPTEE 228 (252)
T ss_pred hhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHH-HHHHhhheeeeeC-CeEEEeechhh
Confidence 999999999999999999975 48899999999874 7788999999985 79999998765
|
|
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-38 Score=346.03 Aligned_cols=205 Identities=26% Similarity=0.367 Sum_probs=172.8
Q ss_pred cCCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCCh------hcccceEEEEccCCC
Q 001400 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ------ETFARISGYCEQNDI 912 (1085)
Q Consensus 839 ~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~------~~~~~~~gy~~Q~~~ 912 (1085)
+++..+|+|+||+|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.. ..+++.+||++|++.
T Consensus 10 ~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~ 87 (235)
T cd03261 10 FGGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLR--PDSGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGA 87 (235)
T ss_pred ECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEccccChhhHHHHhcceEEEccCcc
Confidence 345679999999999999999999999999999999999876 468999999987542 234667999999999
Q ss_pred CCCCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q 001400 913 HSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFM 992 (1085)
Q Consensus 913 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illl 992 (1085)
+++.+||+||+.+...... ........+.++++++.+++.+..+..+ ..||||||||++|||||+.+|+||||
T Consensus 88 ~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~ia~al~~~p~llll 160 (235)
T cd03261 88 LFDSLTVFENVAFPLREHT--RLSEEEIREIVLEKLEAVGLRGAEDLYP-----AELSGGMKKRVALARALALDPELLLY 160 (235)
T ss_pred cCCCCcHHHHHHHHHhhcc--CCCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEe
Confidence 8999999999987643221 1223334456788999999977665543 57999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHC-CceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCC
Q 001400 993 DEPTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1085)
Q Consensus 993 DEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~ 1054 (1085)
||||+|||+.++..+++.|+++.++ |+|||++||+++ ++.+.||++++|++ |++++.|+.
T Consensus 161 DEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~-~~~~~~d~v~~l~~-G~i~~~g~~ 221 (235)
T cd03261 161 DEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLD-TAFAIADRIAVLYD-GKIVAEGTP 221 (235)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhcCEEEEEEC-CeEEEecCH
Confidence 9999999999999999999998764 899999999986 47778999999985 788888874
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=364.02 Aligned_cols=205 Identities=25% Similarity=0.358 Sum_probs=177.9
Q ss_pred CCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCCh-hcccceEEEEccCCCCCCCCC
Q 001400 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ-ETFARISGYCEQNDIHSPGLT 918 (1085)
Q Consensus 840 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~-~~~~~~~gy~~Q~~~~~~~~t 918 (1085)
++..+|+|+||+|++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++.. ...++.+|||+|++.++|.+|
T Consensus 15 ~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~--p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~lfp~~t 92 (356)
T PRK11650 15 GKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLER--ITSGEIWIGGRVVNELEPADRDIAMVFQNYALYPHMS 92 (356)
T ss_pred CCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCC--CCceEEEECCEECCCCCHHHCCEEEEeCCccccCCCC
Confidence 44679999999999999999999999999999999999876 568999999987643 223578999999999999999
Q ss_pred HHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCC
Q 001400 919 VLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSG 998 (1085)
Q Consensus 919 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEPtsg 998 (1085)
|+||+.|+...+. ....+..+.++++++.+++.++.+... .+|||||||||+|||||+.+|+||+||||||+
T Consensus 93 v~eNi~~~~~~~~---~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSgGq~QRvalARAL~~~P~llLLDEP~s~ 164 (356)
T PRK11650 93 VRENMAYGLKIRG---MPKAEIEERVAEAARILELEPLLDRKP-----RELSGGQRQRVAMGRAIVREPAVFLFDEPLSN 164 (356)
T ss_pred HHHHHHhHHhhcC---CCHHHHHHHHHHHHHHcCChhHhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 9999998764321 233444567889999999988777653 57999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHC-CceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCCC
Q 001400 999 LDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGS 1056 (1085)
Q Consensus 999 LD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~~ 1056 (1085)
||+.++..+.+.|+++.++ |.|+|++|||++ ++.+.+|++++|+ +|+++..|+..+
T Consensus 165 LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~l~D~i~vl~-~G~i~~~g~~~~ 221 (356)
T PRK11650 165 LDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQV-EAMTLADRVVVMN-GGVAEQIGTPVE 221 (356)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEe-CCEEEEECCHHH
Confidence 9999999999999998765 999999999986 5888999999997 579999987643
|
|
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-38 Score=362.59 Aligned_cols=207 Identities=26% Similarity=0.373 Sum_probs=179.9
Q ss_pred cccCCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCCh-hcccceEEEEccCCCCCC
Q 001400 837 VLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ-ETFARISGYCEQNDIHSP 915 (1085)
Q Consensus 837 ~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~-~~~~~~~gy~~Q~~~~~~ 915 (1085)
+.+++..+|+|+||++++||+++|+|||||||||||++|+|... +.+|+|.++|.+... ...+|.+|||+|++.++|
T Consensus 12 ~~~~~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~--p~~G~I~i~g~~~~~~~~~~r~ig~v~Q~~~lfp 89 (353)
T TIGR03265 12 KRFGAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLER--QTAGTIYQGGRDITRLPPQKRDYGIVFQSYALFP 89 (353)
T ss_pred EEeCCeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCC--CCceEEEECCEECCCCCHHHCCEEEEeCCcccCC
Confidence 33455679999999999999999999999999999999999876 568999999987643 234678999999999999
Q ss_pred CCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCC
Q 001400 916 GLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEP 995 (1085)
Q Consensus 916 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEP 995 (1085)
.+||+||+.|+...+ .....+.++.++++++.++|.++.+... .+|||||||||+|||||+.+|++|+||||
T Consensus 90 ~~tv~eNi~~~~~~~---~~~~~~~~~~~~~~l~~l~L~~~~~~~~-----~~LSgGq~QRvaLARaL~~~P~llLLDEP 161 (353)
T TIGR03265 90 NLTVADNIAYGLKNR---GMGRAEVAERVAELLDLVGLPGSERKYP-----GQLSGGQQQRVALARALATSPGLLLLDEP 161 (353)
T ss_pred CCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCCchhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 999999999986533 2233445667899999999988877653 57999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHC-CceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCC
Q 001400 996 TSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1085)
Q Consensus 996 tsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~ 1055 (1085)
||+||+.++..+.+.|+++.++ |.|+|++|||++ ++...+|++++|++ |+++..|+..
T Consensus 162 ~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~-ea~~l~d~i~vl~~-G~i~~~g~~~ 220 (353)
T TIGR03265 162 LSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQE-EALSMADRIVVMNH-GVIEQVGTPQ 220 (353)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEEEcCHH
Confidence 9999999999999999998765 899999999986 67889999999985 7899998764
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-38 Score=360.04 Aligned_cols=212 Identities=25% Similarity=0.341 Sum_probs=180.6
Q ss_pred ccccccccCCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCCh--hcccceEEEEcc
Q 001400 832 LKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ--ETFARISGYCEQ 909 (1085)
Q Consensus 832 ~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~--~~~~~~~gy~~Q 909 (1085)
++++++.+++..+|+||||+|++|+++||+||||||||||+++|+|... +.+|+|.++|.++.. ...++.+||++|
T Consensus 44 i~nl~k~y~~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~--p~~G~i~i~G~~~~~~~~~~~~~ig~v~q 121 (340)
T PRK13536 44 LAGVSKSYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTS--PDAGKITVLGVPVPARARLARARIGVVPQ 121 (340)
T ss_pred EEEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC--CCceEEEECCEECCcchHHHhccEEEEeC
Confidence 3444455567789999999999999999999999999999999999876 568999999988643 245678999999
Q ss_pred CCCCCCCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCE
Q 001400 910 NDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSI 989 (1085)
Q Consensus 910 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~i 989 (1085)
++.+++.+|+.||+.|.+..+. ....+..+.++++++.+++.+..+..+ .+||+|||||++||+||+.+|++
T Consensus 122 ~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~ll~~~~L~~~~~~~~-----~~LS~G~kqrv~lA~aL~~~P~l 193 (340)
T PRK13536 122 FDNLDLEFTVRENLLVFGRYFG---MSTREIEAVIPSLLEFARLESKADARV-----SDLSGGMKRRLTLARALINDPQL 193 (340)
T ss_pred CccCCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchhhCCCh-----hhCCHHHHHHHHHHHHHhcCCCE
Confidence 9999999999999987554332 122333455778899999987777654 47999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCC
Q 001400 990 VFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1085)
Q Consensus 990 lllDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~ 1055 (1085)
|||||||+|||+.++..++++|+++.++|.|||++||+++ ++.+.||++++|++ |++++.|+..
T Consensus 194 LiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~-e~~~~~d~i~il~~-G~i~~~g~~~ 257 (340)
T PRK13536 194 LILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFME-EAERLCDRLCVLEA-GRKIAEGRPH 257 (340)
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEcCHH
Confidence 9999999999999999999999999878999999999987 57788999999985 7999998764
|
|
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-38 Score=362.17 Aligned_cols=207 Identities=25% Similarity=0.347 Sum_probs=179.6
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCcee--eEEEECCccCCCCCC-CceEEEEccCCCCCCCC
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVS--GKITYNGHGFKEFVP-PRTSAYVSQQDWQVAEM 224 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~--G~i~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~l 224 (1085)
..+|+|+|++|++|++++|+|||||||||||++|+|+++|+ + |+|.++|.++....+ ++.++||+|+..+|+++
T Consensus 18 ~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~---~~~G~i~~~g~~~~~~~~~~r~ig~vfQ~~~l~p~~ 94 (362)
T TIGR03258 18 NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAA---GLTGRIAIADRDLTHAPPHKRGLALLFQNYALFPHL 94 (362)
T ss_pred eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCCEEEEECCEECCCCCHHHCCEEEEECCcccCCCC
Confidence 35999999999999999999999999999999999998876 7 999999998765433 46799999999999999
Q ss_pred CHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCccc
Q 001400 225 TVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEML 304 (1085)
Q Consensus 225 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 304 (1085)
||+||+.|+.+..+... .+.+.+++++++.+||++..|+.+
T Consensus 95 tv~enl~~~l~~~~~~~----------------------------------~~~~~~v~~~l~~~gL~~~~~~~~----- 135 (362)
T TIGR03258 95 KVEDNVAFGLRAQKMPK----------------------------------ADIAERVADALKLVGLGDAAAHLP----- 135 (362)
T ss_pred cHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHhcCCCchhhCCh-----
Confidence 99999999765432110 001234788999999998877655
Q ss_pred ccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEecCC
Q 001400 305 KGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEG 384 (1085)
Q Consensus 305 ~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~~G 384 (1085)
+.|||||||||+|||||+.+|++|+|||||+|||+.++.++.+.|+++.+..++++++.++|+..++..++|+|++|++|
T Consensus 136 ~~LSgGq~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G 215 (362)
T TIGR03258 136 AQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDG 215 (362)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 46999999999999999999999999999999999999999999999876543556677889999999999999999999
Q ss_pred eEEEecChhhHH
Q 001400 385 QIVYQGPRVSVL 396 (1085)
Q Consensus 385 ~iv~~G~~~~~~ 396 (1085)
+++..|+++++.
T Consensus 216 ~i~~~g~~~~~~ 227 (362)
T TIGR03258 216 RLAAHGEPQALY 227 (362)
T ss_pred EEEEEcCHHHHH
Confidence 999999998874
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=327.93 Aligned_cols=205 Identities=25% Similarity=0.319 Sum_probs=176.6
Q ss_pred eecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCC----CCceEEEEccCCC--CCC
Q 001400 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV----PPRTSAYVSQQDW--QVA 222 (1085)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~----~~~~~~yv~Q~d~--~~~ 222 (1085)
++|+|||++|.+||.++|+|+||||||||.++|+|+..|+ +|+|.++|.+..... ..+.+-+|+||+. +-|
T Consensus 21 ~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~---~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP 97 (252)
T COG1124 21 HALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPS---SGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNP 97 (252)
T ss_pred hhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCC---CceEEECCcccCccccchhhccceeEEecCCccccCc
Confidence 6999999999999999999999999999999999999887 999999998765543 3578899999974 678
Q ss_pred CCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCc
Q 001400 223 EMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDE 302 (1085)
Q Consensus 223 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 302 (1085)
..||++.|.-+.+..+.. +.+.++.++|+.+||+...- ++
T Consensus 98 ~~tv~~~l~Epl~~~~~~------------------------------------~~~~~i~~~L~~VgL~~~~l----~R 137 (252)
T COG1124 98 RRTVGRILSEPLRPHGLS------------------------------------KSQQRIAELLDQVGLPPSFL----DR 137 (252)
T ss_pred chhHHHHHhhhhccCCcc------------------------------------HHHHHHHHHHHHcCCCHHHH----hc
Confidence 899999997655432211 11233788999999986432 34
Q ss_pred ccccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEec
Q 001400 303 MLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLS 382 (1085)
Q Consensus 303 ~~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~ 382 (1085)
.+..|||||||||+|||||..+|++|++|||||+||++.+.+|++.|.++.+.. +.+.+.++|+..-+..+||||++|+
T Consensus 138 ~P~eLSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~-~lt~l~IsHdl~~v~~~cdRi~Vm~ 216 (252)
T COG1124 138 RPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKER-GLTYLFISHDLALVEHMCDRIAVMD 216 (252)
T ss_pred CchhcChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhc-CceEEEEeCcHHHHHHHhhheeeee
Confidence 566799999999999999999999999999999999999999999999998765 4566779999999999999999999
Q ss_pred CCeEEEecChhhHHH
Q 001400 383 EGQIVYQGPRVSVLD 397 (1085)
Q Consensus 383 ~G~iv~~G~~~~~~~ 397 (1085)
+|++++.++.+++.+
T Consensus 217 ~G~ivE~~~~~~l~~ 231 (252)
T COG1124 217 NGQIVEIGPTEELLS 231 (252)
T ss_pred CCeEEEeechhhhhc
Confidence 999999999998864
|
|
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=364.26 Aligned_cols=206 Identities=27% Similarity=0.366 Sum_probs=178.6
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCC-CceEEEEccCCCCCCCCCH
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP-PRTSAYVSQQDWQVAEMTV 226 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 226 (1085)
+.+|+|+|+.+++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++....+ ++.++||+|++.+||++||
T Consensus 17 ~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~---~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~lfp~~tv 93 (356)
T PRK11650 17 TQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERIT---SGEIWIGGRVVNELEPADRDIAMVFQNYALYPHMSV 93 (356)
T ss_pred CEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCC---ceEEEECCEECCCCCHHHCCEEEEeCCccccCCCCH
Confidence 35999999999999999999999999999999999998876 9999999998865443 4789999999999999999
Q ss_pred HHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCccccc
Q 001400 227 RETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKG 306 (1085)
Q Consensus 227 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 306 (1085)
+||+.|+.+..+... .+...+++++++.+||++..+..+ +.
T Consensus 94 ~eNi~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gL~~~~~~~~-----~~ 134 (356)
T PRK11650 94 RENMAYGLKIRGMPK----------------------------------AEIEERVAEAARILELEPLLDRKP-----RE 134 (356)
T ss_pred HHHHHhHHhhcCCCH----------------------------------HHHHHHHHHHHHHcCChhHhhCCh-----hh
Confidence 999999765322100 001234788999999988777654 56
Q ss_pred CchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEecCCeE
Q 001400 307 ISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQI 386 (1085)
Q Consensus 307 LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~~G~i 386 (1085)
|||||||||+|||||+.+|++|+||||||+||+.++..+.+.|+++.+.. +++++.++|+..++..++|+|++|++|++
T Consensus 135 LSgGq~QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~-g~tii~vTHd~~ea~~l~D~i~vl~~G~i 213 (356)
T PRK11650 135 LSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRL-KTTSLYVTHDQVEAMTLADRVVVMNGGVA 213 (356)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEeCCEE
Confidence 99999999999999999999999999999999999999999999987654 45566688999999999999999999999
Q ss_pred EEecChhhHH
Q 001400 387 VYQGPRVSVL 396 (1085)
Q Consensus 387 v~~G~~~~~~ 396 (1085)
+..|+++++.
T Consensus 214 ~~~g~~~~~~ 223 (356)
T PRK11650 214 EQIGTPVEVY 223 (356)
T ss_pred EEECCHHHHH
Confidence 9999998874
|
|
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-38 Score=361.15 Aligned_cols=205 Identities=24% Similarity=0.392 Sum_probs=178.7
Q ss_pred cCCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCChh-cccceEEEEccCCCCCCCC
Q 001400 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE-TFARISGYCEQNDIHSPGL 917 (1085)
Q Consensus 839 ~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~-~~~~~~gy~~Q~~~~~~~~ 917 (1085)
+++..+|+|+||+|++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++... ..+|.+|||+|++.++|++
T Consensus 16 ~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~--p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~~ 93 (351)
T PRK11432 16 FGSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEK--PTEGQIFIDGEDVTHRSIQQRDICMVFQSYALFPHM 93 (351)
T ss_pred ECCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCC--CCceEEEECCEECCCCCHHHCCEEEEeCCcccCCCC
Confidence 345679999999999999999999999999999999999876 5689999999876532 2357899999999999999
Q ss_pred CHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCC
Q 001400 918 TVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTS 997 (1085)
Q Consensus 918 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEPts 997 (1085)
||+||+.|+...+. ....+..+.++++++.+++.++.+... ..|||||||||+|||||+.+|++|+||||||
T Consensus 94 tv~eNi~~~l~~~~---~~~~~~~~~v~~~l~~~gl~~~~~r~~-----~~LSgGq~QRVaLARaL~~~P~lLLLDEP~s 165 (351)
T PRK11432 94 SLGENVGYGLKMLG---VPKEERKQRVKEALELVDLAGFEDRYV-----DQISGGQQQRVALARALILKPKVLLFDEPLS 165 (351)
T ss_pred CHHHHHHHHHhHcC---CCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEcCCcc
Confidence 99999999865432 233455667899999999988776653 5799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHC-CceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCC
Q 001400 998 GLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1085)
Q Consensus 998 gLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~ 1055 (1085)
+||+.++..+.+.|+++.++ |.|+|++|||++ ++.+.+|++++|++ |+++..|+..
T Consensus 166 ~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-e~~~laD~i~vm~~-G~i~~~g~~~ 222 (351)
T PRK11432 166 NLDANLRRSMREKIRELQQQFNITSLYVTHDQS-EAFAVSDTVIVMNK-GKIMQIGSPQ 222 (351)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEEEcCHH
Confidence 99999999999999999765 899999999986 57888999999985 7899888764
|
|
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-38 Score=361.64 Aligned_cols=206 Identities=24% Similarity=0.373 Sum_probs=178.9
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCC-CceEEEEccCCCCCCCCCH
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP-PRTSAYVSQQDWQVAEMTV 226 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 226 (1085)
..+|+|+|+.+++||+++|+|||||||||||++|+|+++++ +|+|.++|.++....+ +|.++||+|+..+||++||
T Consensus 19 ~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~---~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~~tv 95 (351)
T PRK11432 19 NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPT---EGQIFIDGEDVTHRSIQQRDICMVFQSYALFPHMSL 95 (351)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCC---ceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCCH
Confidence 45899999999999999999999999999999999999876 9999999998866544 4789999999999999999
Q ss_pred HHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCccccc
Q 001400 227 RETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKG 306 (1085)
Q Consensus 227 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 306 (1085)
+||+.|+.+.++... .+.+.+++++++.+||.+..+.. ++.
T Consensus 96 ~eNi~~~l~~~~~~~----------------------------------~~~~~~v~~~l~~~gl~~~~~r~-----~~~ 136 (351)
T PRK11432 96 GENVGYGLKMLGVPK----------------------------------EERKQRVKEALELVDLAGFEDRY-----VDQ 136 (351)
T ss_pred HHHHHHHHhHcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhcCC-----hhh
Confidence 999999865432110 01123478899999998877654 457
Q ss_pred CchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEecCCeE
Q 001400 307 ISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQI 386 (1085)
Q Consensus 307 LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~~G~i 386 (1085)
|||||||||+|||||+.+|++|+|||||+|||+.++.++.+.|+++.+..+ ++++.++|+..++..++|+|++|++|++
T Consensus 137 LSgGq~QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g-~tii~vTHd~~e~~~laD~i~vm~~G~i 215 (351)
T PRK11432 137 ISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFN-ITSLYVTHDQSEAFAVSDTVIVMNKGKI 215 (351)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcC-CEEEEEcCCHHHHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999999876544 4566688999999999999999999999
Q ss_pred EEecChhhHH
Q 001400 387 VYQGPRVSVL 396 (1085)
Q Consensus 387 v~~G~~~~~~ 396 (1085)
+..|+++++.
T Consensus 216 ~~~g~~~~~~ 225 (351)
T PRK11432 216 MQIGSPQELY 225 (351)
T ss_pred EEEcCHHHHH
Confidence 9999998874
|
|
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=339.65 Aligned_cols=201 Identities=26% Similarity=0.376 Sum_probs=178.1
Q ss_pred eEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCC----hhcccceEEEEccCCCC-CCC
Q 001400 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKR----QETFARISGYCEQNDIH-SPG 916 (1085)
Q Consensus 842 ~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~----~~~~~~~~gy~~Q~~~~-~~~ 916 (1085)
..+|+++|++|++|+.++|+|+||||||||+++|+|... +.+|.|.++|.+.. ...+++.+|||+|+|.. +..
T Consensus 17 ~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~--p~~G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~~~ 94 (235)
T COG1122 17 KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLK--PTSGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFG 94 (235)
T ss_pred ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCc--CCCCEEEECCeeccchhhHHHhhcceEEEEECccccccc
Confidence 589999999999999999999999999999999999877 46899999999855 45678899999999865 457
Q ss_pred CCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Q 001400 917 LTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPT 996 (1085)
Q Consensus 917 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEPt 996 (1085)
-||.|.+.|+.... ..+.++.+++++++++.+++.++++... ..|||||||||+||.+|+.+|++|+|||||
T Consensus 95 ~tV~~evafg~~n~---g~~~~e~~~rv~~~l~~vgl~~~~~r~p-----~~LSGGqkqRvaIA~vLa~~P~iliLDEPt 166 (235)
T COG1122 95 PTVEDEVAFGLENL---GLPREEIEERVAEALELVGLEELLDRPP-----FNLSGGQKQRVAIAGVLAMGPEILLLDEPT 166 (235)
T ss_pred CcHHHHHhhchhhc---CCCHHHHHHHHHHHHHHcCchhhccCCc-----cccCCcceeeHHhhHHHHcCCCEEEEcCCC
Confidence 79999999986533 3444567788999999999998877643 589999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHC-CceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCC
Q 001400 997 SGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1085)
Q Consensus 997 sgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~ 1054 (1085)
||||+.+++.+++.++++.++ |.|||++|||.+ .+.+.+|++++|++ |++++.|+.
T Consensus 167 a~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~-~~~~~ad~v~vl~~-G~i~~~g~p 223 (235)
T COG1122 167 AGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLE-LVLEYADRVVVLDD-GKILADGDP 223 (235)
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHH-HHHhhCCEEEEEEC-CEEeecCCH
Confidence 999999999999999999877 689999999987 47788999999985 799999974
|
|
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-38 Score=355.90 Aligned_cols=204 Identities=27% Similarity=0.379 Sum_probs=175.8
Q ss_pred CCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCCh--hcccceEEEEccCCCCCCCC
Q 001400 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ--ETFARISGYCEQNDIHSPGL 917 (1085)
Q Consensus 840 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~--~~~~~~~gy~~Q~~~~~~~~ 917 (1085)
++..+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.++|.++.. ...++.+||++|++.+++.+
T Consensus 4 ~~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~ 81 (302)
T TIGR01188 4 GDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLR--PTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDL 81 (302)
T ss_pred CCeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCC
Confidence 45679999999999999999999999999999999999876 568999999987643 23466799999999999999
Q ss_pred CHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCC
Q 001400 918 TVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTS 997 (1085)
Q Consensus 918 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEPts 997 (1085)
||+||+.+.+.++. .......+.++++++.+++.+..+..+ ..||||||||++||+||+.+|++|||||||+
T Consensus 82 tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~lllLDEPt~ 153 (302)
T TIGR01188 82 TGRENLEMMGRLYG---LPKDEAEERAEELLELFELGEAADRPV-----GTYSGGMRRRLDIAASLIHQPDVLFLDEPTT 153 (302)
T ss_pred cHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhHhCCch-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 99999988665432 222334456789999999987766654 5799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCC
Q 001400 998 GLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1085)
Q Consensus 998 gLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~ 1055 (1085)
|||+.++..+++.|+++.++|.|||++||+++ ++.+.||++++|++ |++++.|+..
T Consensus 154 gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~-~~~~~~d~v~~l~~-G~i~~~g~~~ 209 (302)
T TIGR01188 154 GLDPRTRRAIWDYIRALKEEGVTILLTTHYME-EADKLCDRIAIIDH-GRIIAEGTPE 209 (302)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEECCHH
Confidence 99999999999999999877999999999986 57788999999985 7899888753
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-38 Score=360.84 Aligned_cols=205 Identities=27% Similarity=0.336 Sum_probs=177.8
Q ss_pred cCCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeee--eEEEEcCccCCh-hcccceEEEEccCCCCCC
Q 001400 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIE--GDIYISGYPKRQ-ETFARISGYCEQNDIHSP 915 (1085)
Q Consensus 839 ~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~--G~i~i~g~~~~~-~~~~~~~gy~~Q~~~~~~ 915 (1085)
+++..+|+|+||+|++||+++|+|||||||||||++|+|... +.+ |+|.++|.++.. ...++.+||++|++.++|
T Consensus 15 ~~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~--p~~~~G~i~~~g~~~~~~~~~~r~ig~vfQ~~~l~p 92 (362)
T TIGR03258 15 YGANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVK--AAGLTGRIAIADRDLTHAPPHKRGLALLFQNYALFP 92 (362)
T ss_pred ECCeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCCEEEEECCEECCCCCHHHCCEEEEECCcccCC
Confidence 345679999999999999999999999999999999999876 457 999999987643 224577999999999999
Q ss_pred CCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCC
Q 001400 916 GLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEP 995 (1085)
Q Consensus 916 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEP 995 (1085)
.+||+||+.|+...+ .....+.++.++++++.++|.++.+... .+|||||||||+|||||+.+|++|+||||
T Consensus 93 ~~tv~enl~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~~~~-----~~LSgGq~QRvaLARAL~~~P~llLLDEP 164 (362)
T TIGR03258 93 HLKVEDNVAFGLRAQ---KMPKADIAERVADALKLVGLGDAAAHLP-----AQLSGGMQQRIAIARAIAIEPDVLLLDEP 164 (362)
T ss_pred CCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhcCCCchhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCc
Confidence 999999999876433 2233445567899999999988877654 58999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHC--CceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCC
Q 001400 996 TSGLDARAAAIVMRTVRNIVNT--GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1085)
Q Consensus 996 tsgLD~~~~~~i~~~l~~~~~~--g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~ 1055 (1085)
|+|||+..+..+.+.|+++.++ |.|+|++|||++ ++...+|++++|++ |+++..|+..
T Consensus 165 ~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~-ea~~l~dri~vl~~-G~i~~~g~~~ 224 (362)
T TIGR03258 165 LSALDANIRANMREEIAALHEELPELTILCVTHDQD-DALTLADKAGIMKD-GRLAAHGEPQ 224 (362)
T ss_pred cccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcCHH
Confidence 9999999999999999999875 799999999986 57888999999985 7999998754
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-38 Score=311.71 Aligned_cols=200 Identities=26% Similarity=0.378 Sum_probs=177.1
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCC------CCceEEEEccCCCCC
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV------PPRTSAYVSQQDWQV 221 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~------~~~~~~yv~Q~d~~~ 221 (1085)
..+|+|||+.|++||++.|+||||||||||||+|.+...|+ +|+|.+||+++.... .+|.||+|+|+.-++
T Consensus 15 ~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt---~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL 91 (223)
T COG2884 15 REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPT---RGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLL 91 (223)
T ss_pred chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCC---CceEEECCeecccccccccchhhheeeeEeeecccc
Confidence 56999999999999999999999999999999999998876 999999999986543 368999999999999
Q ss_pred CCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccC
Q 001400 222 AEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGD 301 (1085)
Q Consensus 222 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 301 (1085)
++.||.||++|+.+..|... .+.+.++.++|+..||.+.++..
T Consensus 92 ~~~tvyeNVA~pL~v~G~~~----------------------------------~~i~~rV~~~L~~VgL~~k~~~l--- 134 (223)
T COG2884 92 PDRTVYENVALPLRVIGKPP----------------------------------REIRRRVSEVLDLVGLKHKARAL--- 134 (223)
T ss_pred ccchHhhhhhhhhhccCCCH----------------------------------HHHHHHHHHHHHHhccchhhhcC---
Confidence 99999999999987765322 11244688999999999988754
Q ss_pred cccccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEe
Q 001400 302 EMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILL 381 (1085)
Q Consensus 302 ~~~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L 381 (1085)
+..|||||||||+||||++.+|++|+.||||-+||+..+.+|++.+.++.+. +|+|++.+|+..-+..+--+++.|
T Consensus 135 --P~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~--GtTVl~ATHd~~lv~~~~~rvl~l 210 (223)
T COG2884 135 --PSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRL--GTTVLMATHDLELVNRMRHRVLAL 210 (223)
T ss_pred --ccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhc--CcEEEEEeccHHHHHhccCcEEEE
Confidence 4579999999999999999999999999999999999999999999998763 677777889999898999999999
Q ss_pred cCCeEEEecC
Q 001400 382 SEGQIVYQGP 391 (1085)
Q Consensus 382 ~~G~iv~~G~ 391 (1085)
++|+++....
T Consensus 211 ~~Grl~~d~~ 220 (223)
T COG2884 211 EDGRLVRDES 220 (223)
T ss_pred eCCEEEeccc
Confidence 9999997653
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=387.05 Aligned_cols=256 Identities=29% Similarity=0.429 Sum_probs=201.1
Q ss_pred hHhhHHHHHHHhhcccCChHHHHHHHHHHHHhcCCCCCC--cEEEEeeeEEEEEEecCCCCCCChhhHHHHHHHHHHHHH
Q 001400 61 VQEQRLVLDRLVNAVEDDPERFFDRMRKRCEAVDLELPK--IEVRFQNLTVESFVHLGSRALPTIPNFIFNMTEALLRQL 138 (1085)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~l~v~~~~~~~~~~~~t~~~~~~~~~~~~~~~~ 138 (1085)
.++-+...+|+.++.+.++|.-.. +.....|+ =+++|+|+++.=
T Consensus 436 ~q~~~~~~~rL~dil~~~~E~~~~-------~~~~~~~~~~g~I~~~nvsf~y--------------------------- 481 (709)
T COG2274 436 FQQAKVALERLGDILDTPPEQEGD-------KTLIHLPKLQGEIEFENVSFRY--------------------------- 481 (709)
T ss_pred HHHHHHHHHHHHHHhcCCcccccc-------cccccccccCceEEEEEEEEEe---------------------------
Confidence 456788888999998888873111 11123333 479999998542
Q ss_pred hHhcCCCcceeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCC---CceEEEEc
Q 001400 139 RIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP---PRTSAYVS 215 (1085)
Q Consensus 139 ~~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~---~~~~~yv~ 215 (1085)
...+..+|+|+|++|+|||.++|+|+||||||||+|+|+|++.|. +|+|.+||+++++..+ ++.++||+
T Consensus 482 -----~~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~---~G~I~~dg~dl~~i~~~~lR~~ig~V~ 553 (709)
T COG2274 482 -----GPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQ---QGRILLDGVDLNDIDLASLRRQVGYVL 553 (709)
T ss_pred -----CCCCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEeHHhcCHHHHHhheeEEc
Confidence 112236999999999999999999999999999999999999887 9999999999887754 68999999
Q ss_pred cCCCCCCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccc
Q 001400 216 QQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCA 295 (1085)
Q Consensus 216 Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~ 295 (1085)
|++.+|. .||+||+.++.. ....+.+.+++ ...+. .+ .+..++..+
T Consensus 554 Q~~~Lf~-gSI~eNi~l~~p----~~~~e~i~~A~---------------------~~ag~-----~~---fI~~lP~gy 599 (709)
T COG2274 554 QDPFLFS-GSIRENIALGNP----EATDEEIIEAA---------------------QLAGA-----HE---FIENLPMGY 599 (709)
T ss_pred ccchhhc-CcHHHHHhcCCC----CCCHHHHHHHH---------------------HHhCc-----HH---HHHhccccc
Confidence 9998555 599999988532 11112222222 11111 11 134689999
Q ss_pred cccccCcccccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhc
Q 001400 296 DTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELF 375 (1085)
Q Consensus 296 dt~vg~~~~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~ 375 (1085)
||.||+ +..+||||||||++|||||+.+|+||+||||||+||+.+...|.+.|.++.+ ++|+|++. |. ..+...|
T Consensus 600 ~t~v~E-~G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~--~~T~I~Ia-HR-l~ti~~a 674 (709)
T COG2274 600 DTPVGE-GGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQ--GRTVIIIA-HR-LSTIRSA 674 (709)
T ss_pred cccccc-CCCCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhc--CCeEEEEE-cc-chHhhhc
Confidence 999996 4568999999999999999999999999999999999999999999999864 45666544 43 4578899
Q ss_pred CeEEEecCCeEEEecChhhHHH
Q 001400 376 DDVILLSEGQIVYQGPRVSVLD 397 (1085)
Q Consensus 376 D~ii~L~~G~iv~~G~~~~~~~ 397 (1085)
|+|++|++|+++.+|+.+++++
T Consensus 675 drIiVl~~Gkiv~~gs~~ell~ 696 (709)
T COG2274 675 DRIIVLDQGKIVEQGSHEELLA 696 (709)
T ss_pred cEEEEccCCceeccCCHHHHHH
Confidence 9999999999999999999986
|
|
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-38 Score=361.79 Aligned_cols=206 Identities=25% Similarity=0.394 Sum_probs=178.6
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCC-CceEEEEccCCCCCCCCCH
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP-PRTSAYVSQQDWQVAEMTV 226 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 226 (1085)
+.+|+|+|+++++|++++|+|||||||||||++|+|+.+|+ +|+|.++|.++....+ +|.++||+|+..+||++||
T Consensus 17 ~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~---~G~I~i~g~~~~~~~~~~r~ig~v~Q~~~lfp~~tv 93 (353)
T TIGR03265 17 FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQT---AGTIYQGGRDITRLPPQKRDYGIVFQSYALFPNLTV 93 (353)
T ss_pred eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCC---ceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCcH
Confidence 45899999999999999999999999999999999998876 9999999998865433 4789999999999999999
Q ss_pred HHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCccccc
Q 001400 227 RETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKG 306 (1085)
Q Consensus 227 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 306 (1085)
+||+.|+.+.++... .+...+++++++.+||++..|..+ ..
T Consensus 94 ~eNi~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~l~L~~~~~~~~-----~~ 134 (353)
T TIGR03265 94 ADNIAYGLKNRGMGR----------------------------------AEVAERVAELLDLVGLPGSERKYP-----GQ 134 (353)
T ss_pred HHHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCCCchhhCCh-----hh
Confidence 999999765322100 001234888999999998877654 57
Q ss_pred CchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEecCCeE
Q 001400 307 ISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQI 386 (1085)
Q Consensus 307 LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~~G~i 386 (1085)
|||||||||+|||||+.+|++++||||+++||..++.++.+.|+++.+..+ ++++.++|+..++..++|+|++|++|++
T Consensus 135 LSgGq~QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~-~tvi~vTHd~~ea~~l~d~i~vl~~G~i 213 (353)
T TIGR03265 135 LSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLG-VTTIMVTHDQEEALSMADRIVVMNHGVI 213 (353)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcC-CEEEEEcCCHHHHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999999876544 4556688999999999999999999999
Q ss_pred EEecChhhHH
Q 001400 387 VYQGPRVSVL 396 (1085)
Q Consensus 387 v~~G~~~~~~ 396 (1085)
++.|+++++.
T Consensus 214 ~~~g~~~~~~ 223 (353)
T TIGR03265 214 EQVGTPQEIY 223 (353)
T ss_pred EEEcCHHHHH
Confidence 9999998874
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-39 Score=372.71 Aligned_cols=214 Identities=26% Similarity=0.424 Sum_probs=176.4
Q ss_pred cCCCcceeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCC---CceEEEEccCC
Q 001400 142 RGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP---PRTSAYVSQQD 218 (1085)
Q Consensus 142 ~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~---~~~~~yv~Q~d 218 (1085)
++.+++.+||+|+|++|+|||.+||+|||||||||+.+.|-.+++|. +|+|++||+|+.+..+ ++.+|+|.|+|
T Consensus 475 YP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~Pt---sG~IllDG~~i~~~~~~~lr~~Ig~V~QEP 551 (716)
T KOG0058|consen 475 YPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPT---SGRILLDGVPISDINHKYLRRKIGLVGQEP 551 (716)
T ss_pred cCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCC---CCeEEECCeehhhcCHHHHHHHeeeeeccc
Confidence 34456788999999999999999999999999999999999999887 9999999999988764 58999999999
Q ss_pred CCCCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCccccccc
Q 001400 219 WQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTL 298 (1085)
Q Consensus 219 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~ 298 (1085)
.+|.. ||+|||.|+.. ....+.+..+++ .++ ..+. +.++++.+||.
T Consensus 552 vLFs~-sI~eNI~YG~~----~~t~e~i~~AAk---~AN-----------------------ah~F---I~~~p~gY~T~ 597 (716)
T KOG0058|consen 552 VLFSG-SIRENIAYGLD----NATDEEIEAAAK---MAN-----------------------AHEF---ITNFPDGYNTV 597 (716)
T ss_pred eeecc-cHHHHHhcCCC----CCCHHHHHHHHH---HhC-----------------------hHHH---HHhCccccccc
Confidence 98775 99999999754 111121211111 111 0122 34689999999
Q ss_pred ccCcccccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeE
Q 001400 299 VGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDV 378 (1085)
Q Consensus 299 vg~~~~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i 378 (1085)
||+++. +||||||||++|||||+.+|.||+|||.||+||+.+...+.+.|.+..+ ++| +++|.|.. .+.+.+|+|
T Consensus 598 VGEkG~-qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~--~rT-VlvIAHRL-STV~~Ad~I 672 (716)
T KOG0058|consen 598 VGEKGS-QLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQ--GRT-VLVIAHRL-STVRHADQI 672 (716)
T ss_pred cCCccc-cccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhc--CCe-EEEEehhh-hHhhhccEE
Confidence 998654 7999999999999999999999999999999999999999999988754 344 45466655 566889999
Q ss_pred EEecCCeEEEecChhhHHH
Q 001400 379 ILLSEGQIVYQGPRVSVLD 397 (1085)
Q Consensus 379 i~L~~G~iv~~G~~~~~~~ 397 (1085)
+++++|++++.|+++++++
T Consensus 673 vvi~~G~V~E~G~h~eLl~ 691 (716)
T KOG0058|consen 673 VVIDKGRVVEMGTHDELLS 691 (716)
T ss_pred EEEcCCeEEecccHHHHhh
Confidence 9999999999999999875
|
|
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-38 Score=338.47 Aligned_cols=200 Identities=28% Similarity=0.427 Sum_probs=170.8
Q ss_pred eEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCChhcccceEEEEccCCCCCCCCCHHH
Q 001400 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLE 921 (1085)
Q Consensus 842 ~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gy~~Q~~~~~~~~tv~e 921 (1085)
..+|+|+||+|++|++++|+|+||||||||+++|+|... +.+|+|.++|.++.. .++.++|++|++.+++..|++|
T Consensus 17 ~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~--~~~~i~~v~q~~~~~~~~tv~e 92 (220)
T cd03293 17 VTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLER--PTSGEVLVDGEPVTG--PGPDRGYVFQQDALLPWLTVLD 92 (220)
T ss_pred eEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECcc--ccCcEEEEecccccccCCCHHH
Confidence 579999999999999999999999999999999999865 468999999987642 3567999999998888899999
Q ss_pred HHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCH
Q 001400 922 SLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDA 1001 (1085)
Q Consensus 922 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEPtsgLD~ 1001 (1085)
|+.+....+. .......+.++++++.+++.+..+... ..||||||||++|||||+.+|++|||||||+|||+
T Consensus 93 ~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~ 164 (220)
T cd03293 93 NVALGLELQG---VPKAEARERAEELLELVGLSGFENAYP-----HQLSGGMRQRVALARALAVDPDVLLLDEPFSALDA 164 (220)
T ss_pred HHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhhhhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEECCCCCCCCH
Confidence 9987653321 122333456788999999976655543 57999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH-CCceEEEEecCccHHHHHhcCEEEEEec-CcEEEEecCC
Q 001400 1002 RAAAIVMRTVRNIVN-TGRTIVCTIHQPSIDIFESFDELLFMKR-GGELIYAGPL 1054 (1085)
Q Consensus 1002 ~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~il~l~~-gG~~~~~g~~ 1054 (1085)
.++..+++.|+++.+ .|+|||++||+++ ++.+.+|++++|++ .|+++..+++
T Consensus 165 ~~~~~~~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~~~G~i~~~~~~ 218 (220)
T cd03293 165 LTREQLQEELLDIWRETGKTVLLVTHDID-EAVFLADRVVVLSARPGRIVAEVEV 218 (220)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhCCEEEEEECCCCEEEEEEEe
Confidence 999999999999865 4899999999986 46788999999985 4899887765
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-38 Score=337.96 Aligned_cols=202 Identities=30% Similarity=0.422 Sum_probs=169.3
Q ss_pred cCCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCChh-cccceEEEEccCCCCCCCC
Q 001400 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE-TFARISGYCEQNDIHSPGL 917 (1085)
Q Consensus 839 ~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~-~~~~~~gy~~Q~~~~~~~~ 917 (1085)
+++..+|+|+||+|++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.++... ..++.++|++|++.+++.+
T Consensus 10 ~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~ 87 (213)
T cd03259 10 YGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLER--PDSGEILIDGRDVTGVPPERRNIGMVFQDYALFPHL 87 (213)
T ss_pred eCCeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEcCcCchhhccEEEEcCchhhccCC
Confidence 344679999999999999999999999999999999999866 5689999999876432 2346799999999888899
Q ss_pred CHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCC
Q 001400 918 TVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTS 997 (1085)
Q Consensus 918 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEPts 997 (1085)
|++||+.+...... .......+.++++++.+++.+..+... ..||||||||++|||||+.+|++|||||||+
T Consensus 88 tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrl~la~al~~~p~~lllDEPt~ 159 (213)
T cd03259 88 TVAENIAFGLKLRG---VPKAEIRARVRELLELVGLEGLLNRYP-----HELSGGQQQRVALARALAREPSLLLLDEPLS 159 (213)
T ss_pred cHHHHHHhHHHHcC---CCHHHHHHHHHHHHHHcCChhhhhcCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 99999987643221 122333456788999999977665543 4799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHH-CCceEEEEecCccHHHHHhcCEEEEEecCcEEEEec
Q 001400 998 GLDARAAAIVMRTVRNIVN-TGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAG 1052 (1085)
Q Consensus 998 gLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g 1052 (1085)
|||+.++..+++.|+++++ .|+|||++||+++ ++.+.||++++|++ |++++.|
T Consensus 160 ~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~-G~i~~~g 213 (213)
T cd03259 160 ALDAKLREELREELKELQRELGITTIYVTHDQE-EALALADRIAVMNE-GRIVQVG 213 (213)
T ss_pred cCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhcCEEEEEEC-CEEEecC
Confidence 9999999999999999876 4899999999986 46788999999986 6777654
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-38 Score=359.46 Aligned_cols=211 Identities=27% Similarity=0.373 Sum_probs=178.9
Q ss_pred ccccCCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCCh-hcccceEEEEccCCCCC
Q 001400 836 GVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ-ETFARISGYCEQNDIHS 914 (1085)
Q Consensus 836 ~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~-~~~~~~~gy~~Q~~~~~ 914 (1085)
.+.+++..+|+|+||+|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.. ...++.+||++|++.++
T Consensus 9 ~~~~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~--p~~G~I~i~g~~i~~~~~~~r~i~~v~Q~~~l~ 86 (353)
T PRK10851 9 KKSFGRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEH--QTSGHIRFHGTDVSRLHARDRKVGFVFQHYALF 86 (353)
T ss_pred EEEeCCeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECCCCCHHHCCEEEEecCcccC
Confidence 333455679999999999999999999999999999999999876 568999999987643 22356799999999999
Q ss_pred CCCCHHHHHHHhhhhcCC-CcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q 001400 915 PGLTVLESLLFSAWLRLP-SEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMD 993 (1085)
Q Consensus 915 ~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlD 993 (1085)
|.+||+||+.|+...+.. ......+..+.++++++.+++.+..+... .+||||||||++|||||+.+|++||||
T Consensus 87 p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LSgGq~QRvalArAL~~~P~llLLD 161 (353)
T PRK10851 87 RHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYP-----AQLSGGQKQRVALARALAVEPQILLLD 161 (353)
T ss_pred CCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 999999999987543210 11233445567889999999987776653 579999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHC-CceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCC
Q 001400 994 EPTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1085)
Q Consensus 994 EPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~ 1055 (1085)
|||+|||+.++..+.+.|+++.++ |.|+|++|||++ ++...+|++++|++ |++++.|+..
T Consensus 162 EP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~-ea~~~~Dri~vl~~-G~i~~~g~~~ 222 (353)
T PRK10851 162 EPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQE-EAMEVADRVVVMSQ-GNIEQAGTPD 222 (353)
T ss_pred CCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcCHH
Confidence 999999999999999999999765 899999999986 57888999999985 7899988754
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-36 Score=393.21 Aligned_cols=201 Identities=26% Similarity=0.375 Sum_probs=174.8
Q ss_pred CeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCCh--hcccceEEEEccCCCCCCCCC
Q 001400 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ--ETFARISGYCEQNDIHSPGLT 918 (1085)
Q Consensus 841 ~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~--~~~~~~~gy~~Q~~~~~~~~t 918 (1085)
++.+|+|+|+++++||+++|+|+||||||||+++|+|... +.+|+|.++|+++.. ...++.+|||+|++.+++.+|
T Consensus 942 ~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~--PtsG~I~i~G~dI~~~~~~~r~~IG~~pQ~~~L~~~LT 1019 (2272)
T TIGR01257 942 GRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLP--PTSGTVLVGGKDIETNLDAVRQSLGMCPQHNILFHHLT 1019 (2272)
T ss_pred CceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCC--CCceEEEECCEECcchHHHHhhcEEEEecCCcCCCCCC
Confidence 4679999999999999999999999999999999999876 568999999988643 235677999999999999999
Q ss_pred HHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCC
Q 001400 919 VLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSG 998 (1085)
Q Consensus 919 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEPtsg 998 (1085)
|+||+.|.+.++. ....+.++.++++++.++|.+..+..+ .+|||||||||+||+||+.+|+||||||||+|
T Consensus 1020 V~E~L~f~~~lkg---~~~~~~~~~v~~lL~~vgL~~~~~~~~-----~~LSGGqKQRLsLArALi~~PkVLLLDEPTSG 1091 (2272)
T TIGR01257 1020 VAEHILFYAQLKG---RSWEEAQLEMEAMLEDTGLHHKRNEEA-----QDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSG 1091 (2272)
T ss_pred HHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEECCCcC
Confidence 9999998765542 222334456889999999988777654 57999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCC
Q 001400 999 LDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1085)
Q Consensus 999 LD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~ 1054 (1085)
||+.+++.++++|++++ +|+|||+|||+++ ++...+||+++|++ |+++..|+.
T Consensus 1092 LDp~sr~~l~~lL~~l~-~g~TIIltTHdmd-ea~~laDrI~iL~~-GkL~~~Gs~ 1144 (2272)
T TIGR01257 1092 VDPYSRRSIWDLLLKYR-SGRTIIMSTHHMD-EADLLGDRIAIISQ-GRLYCSGTP 1144 (2272)
T ss_pred CCHHHHHHHHHHHHHHh-CCCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEecCH
Confidence 99999999999999984 6999999999986 46678999999985 788888864
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-38 Score=352.98 Aligned_cols=206 Identities=29% Similarity=0.378 Sum_probs=177.8
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCC--CCceEEEEccCCCCCCCCC
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV--PPRTSAYVSQQDWQVAEMT 225 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~lT 225 (1085)
+.+|+|||++|++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.+|||+|++.+++.+|
T Consensus 20 ~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~---~G~v~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~t 96 (306)
T PRK13537 20 KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPD---AGSISLCGEPVPSRARHARQRVGVVPQFDNLDPDFT 96 (306)
T ss_pred eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEecccchHHHHhcEEEEeccCcCCCCCc
Confidence 46999999999999999999999999999999999999876 999999999875432 3467999999999999999
Q ss_pred HHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCcccc
Q 001400 226 VRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLK 305 (1085)
Q Consensus 226 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 305 (1085)
|+||+.|.++..+... .+...+++++++.+||.+.+++.++
T Consensus 97 v~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~----- 137 (306)
T PRK13537 97 VRENLLVFGRYFGLSA----------------------------------AAARALVPPLLEFAKLENKADAKVG----- 137 (306)
T ss_pred HHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCchHhcCchh-----
Confidence 9999998655432110 0012246788999999988887764
Q ss_pred cCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEecCCe
Q 001400 306 GISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQ 385 (1085)
Q Consensus 306 ~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~~G~ 385 (1085)
+|||||||||+||+||+.+|++|||||||+|||+.++..+++.|+++++. +++|+.++|..+++.++||+|++|++|+
T Consensus 138 ~LS~G~~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~--g~till~sH~l~e~~~~~d~i~il~~G~ 215 (306)
T PRK13537 138 ELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLAR--GKTILLTTHFMEEAERLCDRLCVIEEGR 215 (306)
T ss_pred hCCHHHHHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhC--CCEEEEECCCHHHHHHhCCEEEEEECCE
Confidence 69999999999999999999999999999999999999999999998643 4566668899999999999999999999
Q ss_pred EEEecChhhHHH
Q 001400 386 IVYQGPRVSVLD 397 (1085)
Q Consensus 386 iv~~G~~~~~~~ 397 (1085)
+++.|+++++..
T Consensus 216 i~~~g~~~~l~~ 227 (306)
T PRK13537 216 KIAEGAPHALIE 227 (306)
T ss_pred EEEECCHHHHHh
Confidence 999999988754
|
|
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-38 Score=358.91 Aligned_cols=207 Identities=22% Similarity=0.303 Sum_probs=178.8
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCC-------CceEEEEccCCCC
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP-------PRTSAYVSQQDWQ 220 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~-------~~~~~yv~Q~d~~ 220 (1085)
+.+|+|+|++|++||+++|+|||||||||||++|+|+++|. +|+|.++|.++....+ ++.++||+|++.+
T Consensus 6 ~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~---~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l 82 (363)
T TIGR01186 6 KKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPT---AGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFAL 82 (363)
T ss_pred ceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCC---ceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcC
Confidence 46999999999999999999999999999999999999876 9999999998876543 5689999999999
Q ss_pred CCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCccccccccc
Q 001400 221 VAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVG 300 (1085)
Q Consensus 221 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 300 (1085)
++++||+||+.|+.+..+... .+...++.++++.+||++..++.+
T Consensus 83 ~~~~TV~eNi~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~vgL~~~~~~~p- 127 (363)
T TIGR01186 83 FPHMTILQNTSLGPELLGWPE----------------------------------QERKEKALELLKLVGLEEYEHRYP- 127 (363)
T ss_pred CCCCCHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHhcCCchhhhCCh-
Confidence 999999999999765432110 001234788899999987777655
Q ss_pred CcccccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEE
Q 001400 301 DEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVIL 380 (1085)
Q Consensus 301 ~~~~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~ 380 (1085)
..|||||||||+|||||+.+|++|+|||||+|||+.++.++.+.++++.+..+ .+|+.++|+.+++..++|+|++
T Consensus 128 ----~~LSGGq~QRV~lARAL~~~p~iLLlDEP~saLD~~~r~~l~~~l~~l~~~~~-~Tii~vTHd~~ea~~~~drI~v 202 (363)
T TIGR01186 128 ----DELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQ-KTIVFITHDLDEAIRIGDRIVI 202 (363)
T ss_pred ----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC-CEEEEEeCCHHHHHHhCCEEEE
Confidence 46999999999999999999999999999999999999999999999876444 4566688999999999999999
Q ss_pred ecCCeEEEecChhhHHH
Q 001400 381 LSEGQIVYQGPRVSVLD 397 (1085)
Q Consensus 381 L~~G~iv~~G~~~~~~~ 397 (1085)
|++|+++..|+++++..
T Consensus 203 l~~G~iv~~g~~~ei~~ 219 (363)
T TIGR01186 203 MKAGEIVQVGTPDEILR 219 (363)
T ss_pred EeCCEEEeeCCHHHHHh
Confidence 99999999999988753
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-38 Score=357.32 Aligned_cols=205 Identities=23% Similarity=0.308 Sum_probs=177.3
Q ss_pred cCCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCCh---hcc----cceEEEEccCC
Q 001400 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETF----ARISGYCEQND 911 (1085)
Q Consensus 839 ~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~---~~~----~~~~gy~~Q~~ 911 (1085)
++++.+|+|+||+|++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.++.. ..+ ++.+|||+|++
T Consensus 3 ~~~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~--p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~ 80 (363)
T TIGR01186 3 TGGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIE--PTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQF 80 (363)
T ss_pred cCCceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCC--CCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCC
Confidence 355679999999999999999999999999999999999877 568999999988653 222 56899999999
Q ss_pred CCCCCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEE
Q 001400 912 IHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVF 991 (1085)
Q Consensus 912 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~ill 991 (1085)
.++|.+||+||+.|+.... .....+..+.+.++++.++|.+..+... .+|||||||||+|||||+.+|+|||
T Consensus 81 ~l~~~~TV~eNi~~~~~~~---~~~~~~~~~~~~~~l~~vgL~~~~~~~p-----~~LSGGq~QRV~lARAL~~~p~iLL 152 (363)
T TIGR01186 81 ALFPHMTILQNTSLGPELL---GWPEQERKEKALELLKLVGLEEYEHRYP-----DELSGGMQQRVGLARALAAEPDILL 152 (363)
T ss_pred cCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhcCCchhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999999999876443 2234455667889999999987766543 5799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHC-CceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCC
Q 001400 992 MDEPTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1085)
Q Consensus 992 lDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~ 1055 (1085)
|||||++||+.++..+++.++++.++ |+|||++|||++ ++.+.+|++++|++ |+++..|+..
T Consensus 153 lDEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~-ea~~~~drI~vl~~-G~iv~~g~~~ 215 (363)
T TIGR01186 153 MDEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLD-EAIRIGDRIVIMKA-GEIVQVGTPD 215 (363)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeC-CEEEeeCCHH
Confidence 99999999999999999999999754 899999999986 47788999999975 7899988754
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-38 Score=353.86 Aligned_cols=210 Identities=26% Similarity=0.340 Sum_probs=175.9
Q ss_pred ccccccCCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCCh--hcccceEEEEccCC
Q 001400 834 QEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ--ETFARISGYCEQND 911 (1085)
Q Consensus 834 ~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~--~~~~~~~gy~~Q~~ 911 (1085)
++++.+++..+|+||||+|++|+++||+||||||||||+++|+|... +.+|+|.++|.+... ...++.+||++|++
T Consensus 9 ~l~~~~~~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~ 86 (303)
T TIGR01288 9 GVSKSYGDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMIS--PDRGKITVLGEPVPSRARLARVAIGVVPQFD 86 (303)
T ss_pred eEEEEeCCeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECcccHHHHhhcEEEEeccc
Confidence 33334455679999999999999999999999999999999999866 468999999987532 23467799999999
Q ss_pred CCCCCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEE
Q 001400 912 IHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVF 991 (1085)
Q Consensus 912 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~ill 991 (1085)
.+++.+|++||+.+.+..+. .......+.++++++.+++.+..+..+ ..||||||||++||+||+.+|++||
T Consensus 87 ~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~ll~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~lll 158 (303)
T TIGR01288 87 NLDPEFTVRENLLVFGRYFG---MSTREIEAVIPSLLEFARLESKADVRV-----ALLSGGMKRRLTLARALINDPQLLI 158 (303)
T ss_pred cCCcCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHCCChhHhcCch-----hhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 98899999999986543321 122333445678899999887666543 4799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCC
Q 001400 992 MDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1085)
Q Consensus 992 lDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~ 1055 (1085)
|||||+|||+.++..+++.|++++++|.|||++||+++ ++.+.||++++|++ |++++.|+..
T Consensus 159 LDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~-~~~~~~d~i~~l~~-G~i~~~g~~~ 220 (303)
T TIGR01288 159 LDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFME-EAERLCDRLCVLES-GRKIAEGRPH 220 (303)
T ss_pred EeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEcCHH
Confidence 99999999999999999999999878999999999987 57788999999985 7899888753
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-38 Score=308.35 Aligned_cols=201 Identities=25% Similarity=0.363 Sum_probs=173.5
Q ss_pred cceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCC-CceEEEEccCCCCCCCCCHHHHHH
Q 001400 153 DLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP-PRTSAYVSQQDWQVAEMTVRETLD 231 (1085)
Q Consensus 153 ~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~E~l~ 231 (1085)
.+++.|++||+++|+||||||||||||.++|...|. +|+|.+||.+.....| +|-+++++|+..+|.++||.+|+.
T Consensus 17 ~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~---~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNig 93 (231)
T COG3840 17 RFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPA---SGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIG 93 (231)
T ss_pred EEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCC---CceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhc
Confidence 477899999999999999999999999999999876 9999999999876655 588999999999999999999998
Q ss_pred HhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCcccccCchhh
Q 001400 232 FAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQ 311 (1085)
Q Consensus 232 f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGq 311 (1085)
++.. ++-+.. ...+..++.++..+||..+.+.+.+ +|||||
T Consensus 94 LGl~---P~LkL~-------------------------------a~~r~~v~~aa~~vGl~~~~~RLP~-----~LSGGq 134 (231)
T COG3840 94 LGLS---PGLKLN-------------------------------AEQREKVEAAAAQVGLAGFLKRLPG-----ELSGGQ 134 (231)
T ss_pred ccCC---cccccC-------------------------------HHHHHHHHHHHHHhChhhHhhhCcc-----ccCchH
Confidence 8642 111110 0113358899999999999887654 699999
Q ss_pred hhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEecCCeEEEecC
Q 001400 312 KKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQGP 391 (1085)
Q Consensus 312 kqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~~G~iv~~G~ 391 (1085)
||||++||+|+.+-+||+||||+|+||+.-+.++...+.+++.+.+.|++ +++|+.+++..++|+++++++|+|.++|+
T Consensus 135 RQRvALARclvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~Tll-mVTH~~~Da~~ia~~~~fl~~Gri~~~g~ 213 (231)
T COG3840 135 RQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLL-MVTHHPEDAARIADRVVFLDNGRIAAQGS 213 (231)
T ss_pred HHHHHHHHHHhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEE-EEeCCHHHHHHhhhceEEEeCCEEEeecc
Confidence 99999999999999999999999999999999999999999887655554 46677789999999999999999999999
Q ss_pred hhhHH
Q 001400 392 RVSVL 396 (1085)
Q Consensus 392 ~~~~~ 396 (1085)
.++..
T Consensus 214 ~~~~~ 218 (231)
T COG3840 214 TQELL 218 (231)
T ss_pred HHHHh
Confidence 87764
|
|
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-38 Score=337.56 Aligned_cols=205 Identities=27% Similarity=0.359 Sum_probs=172.7
Q ss_pred ccCCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCCh--hcccceEEEEccCCCCCC
Q 001400 838 LEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ--ETFARISGYCEQNDIHSP 915 (1085)
Q Consensus 838 ~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~--~~~~~~~gy~~Q~~~~~~ 915 (1085)
.+++..+|+|+||+|++||++||+|+||||||||+++|+|..+ +.+|+|.++|.+... ...++.++|++|++.+++
T Consensus 9 ~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~ 86 (220)
T cd03265 9 KYGDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLK--PTSGRATVAGHDVVREPREVRRRIGIVFQDLSVDD 86 (220)
T ss_pred EECCEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEecCcChHHHhhcEEEecCCccccc
Confidence 3345679999999999999999999999999999999999865 468999999986532 234567999999998889
Q ss_pred CCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCC
Q 001400 916 GLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEP 995 (1085)
Q Consensus 916 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEP 995 (1085)
.+|++||+.+....+. ....+..+.++++++.+++.+..+... ..||+|||||++||+||+.+|++|+||||
T Consensus 87 ~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qr~~la~al~~~p~llllDEP 158 (220)
T cd03265 87 ELTGWENLYIHARLYG---VPGAERRERIDELLDFVGLLEAADRLV-----KTYSGGMRRRLEIARSLVHRPEVLFLDEP 158 (220)
T ss_pred cCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCHHHhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 9999999988654331 122333456788999999977655543 57999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHC-CceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCC
Q 001400 996 TSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1085)
Q Consensus 996 tsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~ 1054 (1085)
|+|||+.++..+.+.|+++.++ |+|||++||+++ ++.+.+|++++|++ |+++..|+.
T Consensus 159 t~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 216 (220)
T cd03265 159 TIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYME-EAEQLCDRVAIIDH-GRIIAEGTP 216 (220)
T ss_pred ccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeC-CEEEEeCCh
Confidence 9999999999999999999876 899999999986 47778999999985 688887764
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-38 Score=361.09 Aligned_cols=224 Identities=27% Similarity=0.350 Sum_probs=184.1
Q ss_pred ccccccCCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCCh---hcccceEEEEccC
Q 001400 834 QEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFARISGYCEQN 910 (1085)
Q Consensus 834 ~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gy~~Q~ 910 (1085)
++++.++++.+|+|+||+|++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++.. ..+++.+||++|+
T Consensus 8 nls~~y~~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~--p~sG~I~l~G~~i~~~~~~~~~~~ig~v~q~ 85 (402)
T PRK09536 8 DLSVEFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLT--PTAGTVLVAGDDVEALSARAASRRVASVPQD 85 (402)
T ss_pred eEEEEECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCC--CCCcEEEECCEEcCcCCHHHHhcceEEEccC
Confidence 33344566789999999999999999999999999999999999876 568999999987643 3456789999999
Q ss_pred CCCCCCCCHHHHHHHhhhhcCC-CcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCE
Q 001400 911 DIHSPGLTVLESLLFSAWLRLP-SEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSI 989 (1085)
Q Consensus 911 ~~~~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~i 989 (1085)
+.+++.+||+||+.++...+.. .........+.++++++.+++.++.+..+ .+||+|||||+.|||||+++|+|
T Consensus 86 ~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~-----~~LSgGerQRv~IArAL~~~P~i 160 (402)
T PRK09536 86 TSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPV-----TSLSGGERQRVLLARALAQATPV 160 (402)
T ss_pred CCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHHHHHHHHcCCCE
Confidence 9988999999999876421110 01012334567899999999988777654 57999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCCC--chHHHHHHHH
Q 001400 990 VFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGS--KSCELIKYFE 1066 (1085)
Q Consensus 990 lllDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~~--~~~~~~~~~~ 1066 (1085)
|||||||+|||+.++..++++|+++.++|.|||+++|+++ ++.+.||++++|++ |++++.|+..+ ....+.+.|.
T Consensus 161 LLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~-~~~~~adrii~l~~-G~iv~~G~~~ev~~~~~l~~~~~ 237 (402)
T PRK09536 161 LLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLD-LAARYCDELVLLAD-GRVRAAGPPADVLTADTLRAAFD 237 (402)
T ss_pred EEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEecCHHHHhCcHHHHHHhC
Confidence 9999999999999999999999999877999999999987 47789999999985 78899987653 1223555554
|
|
| >COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-38 Score=324.21 Aligned_cols=234 Identities=23% Similarity=0.334 Sum_probs=203.8
Q ss_pred ccccccccccCCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCChhcccceEEEEcc
Q 001400 830 VELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQ 909 (1085)
Q Consensus 830 ~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gy~~Q 909 (1085)
++++++.+.++++.+++||||.++||+++|++|+|||||||++++|.|... +.+|.|.++|.+++.. ...+|||.|.
T Consensus 3 L~ie~vtK~Fg~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle--~~~G~I~~~g~~~~~~-~~~rIGyLPE 79 (300)
T COG4152 3 LEIEGVTKSFGDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLE--PTEGEITWNGGPLSQE-IKNRIGYLPE 79 (300)
T ss_pred eEEecchhccCceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCC--ccCceEEEcCcchhhh-hhhhcccChh
Confidence 345566677889999999999999999999999999999999999999877 5699999999987654 3567999999
Q ss_pred CCCCCCCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCE
Q 001400 910 NDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSI 989 (1085)
Q Consensus 910 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~i 989 (1085)
+..+++.+||.|.|.|.|.+. .++.++....+..+|+.+++.....+.+ .+||-|++|++.+-.+++++|++
T Consensus 80 ERGLy~k~tv~dql~yla~Lk---Gm~~~e~~~~~~~wLer~~i~~~~~~kI-----k~LSKGnqQKIQfisaviHePeL 151 (300)
T COG4152 80 ERGLYPKMTVEDQLKYLAELK---GMPKAEIQKKLQAWLERLEIVGKKTKKI-----KELSKGNQQKIQFISAVIHEPEL 151 (300)
T ss_pred hhccCccCcHHHHHHHHHHhc---CCcHHHHHHHHHHHHHhccccccccchH-----HHhhhhhhHHHHHHHHHhcCCCE
Confidence 999999999999999998876 4556677778899999999998877765 57999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCCCc------------
Q 001400 990 VFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGSK------------ 1057 (1085)
Q Consensus 990 lllDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~~~------------ 1057 (1085)
+|||||+|||||.+.+.+.+.+.+++++|.|||++||+++ .+-+.||++++|++ |+.|..|++...
T Consensus 152 lILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me-~vEeLCD~llmL~k-G~~V~~G~v~~ir~~~Gkk~~~ie 229 (300)
T COG4152 152 LILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRME-HVEELCDRLLMLKK-GQTVLYGTVEDIRRSFGKKRLVIE 229 (300)
T ss_pred EEecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHH-HHHHHhhhhheecC-CceEEeccHHHHHHhcCCceEEEe
Confidence 9999999999999999999999999999999999999997 68899999999985 688888877431
Q ss_pred hHHHHHHHHhccccccCCc
Q 001400 1058 SCELIKYFEVESFMFKSPR 1076 (1085)
Q Consensus 1058 ~~~~~~~~~~~~g~~~~~~ 1076 (1085)
+..-.+-.+.+||+-++..
T Consensus 230 s~~s~eeL~~ipgi~~~~~ 248 (300)
T COG4152 230 SDLSLEELANIPGILKITE 248 (300)
T ss_pred ccCchHHHhcCCCceeeee
Confidence 2223345788899987663
|
|
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-38 Score=360.53 Aligned_cols=206 Identities=26% Similarity=0.354 Sum_probs=178.5
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCC-CceEEEEccCCCCCCCCCH
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP-PRTSAYVSQQDWQVAEMTV 226 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 226 (1085)
.++|+|+|+.+++|++++|+|||||||||||++|+|+++++ +|+|.++|.++....+ +|.++||+|++.+||++||
T Consensus 27 ~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~---~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv 103 (375)
T PRK09452 27 KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPD---SGRIMLDGQDITHVPAENRHVNTVFQSYALFPHMTV 103 (375)
T ss_pred eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHHHCCEEEEecCcccCCCCCH
Confidence 35899999999999999999999999999999999999876 9999999998865433 4789999999999999999
Q ss_pred HHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCccccc
Q 001400 227 RETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKG 306 (1085)
Q Consensus 227 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 306 (1085)
+||+.|+.+..+... .+.+.+++++++.+||++..+..+ ..
T Consensus 104 ~eNi~~~l~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~p-----~~ 144 (375)
T PRK09452 104 FENVAFGLRMQKTPA----------------------------------AEITPRVMEALRMVQLEEFAQRKP-----HQ 144 (375)
T ss_pred HHHHHHHHhhcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhhCCh-----hh
Confidence 999999764322100 001234788999999998777654 57
Q ss_pred CchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEecCCeE
Q 001400 307 ISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQI 386 (1085)
Q Consensus 307 LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~~G~i 386 (1085)
|||||||||+|||||+.+|++|+||||+++||..++.++.+.|+++.+..+ +++|.++|+..++..++|+|++|++|++
T Consensus 145 LSgGq~QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g-~tiI~vTHd~~ea~~laDri~vl~~G~i 223 (375)
T PRK09452 145 LSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLG-ITFVFVTHDQEEALTMSDRIVVMRDGRI 223 (375)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcC-CEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999999887544 5566688999999999999999999999
Q ss_pred EEecChhhHH
Q 001400 387 VYQGPRVSVL 396 (1085)
Q Consensus 387 v~~G~~~~~~ 396 (1085)
+..|+++++.
T Consensus 224 ~~~g~~~~i~ 233 (375)
T PRK09452 224 EQDGTPREIY 233 (375)
T ss_pred EEEcCHHHHH
Confidence 9999998874
|
|
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-38 Score=314.85 Aligned_cols=234 Identities=24% Similarity=0.358 Sum_probs=194.4
Q ss_pred CCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCCh---hcccceEEEEccCCCCCCC
Q 001400 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFARISGYCEQNDIHSPG 916 (1085)
Q Consensus 840 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gy~~Q~~~~~~~ 916 (1085)
.++++|++||++++|||++||+|||||||||||+.|+|... +.+|++.++|.+... ...++..+.++|+..+...
T Consensus 12 ~Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~--p~~G~v~~~g~~l~~~~~~~lA~~raVlpQ~s~laFp 89 (259)
T COG4559 12 AGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELS--PDSGEVTLNGVPLNSWPPEELARHRAVLPQNSSLAFP 89 (259)
T ss_pred ecceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccC--CCCCeEeeCCcChhhCCHHHHHHHhhhcccCcccccc
Confidence 56789999999999999999999999999999999999876 458999999998754 4567778999999988878
Q ss_pred CCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhc------CCCEE
Q 001400 917 LTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVA------NPSIV 990 (1085)
Q Consensus 917 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~------~p~il 990 (1085)
.||+|-+.++..-... .....+..+.++++|+..++.+++.... ..|||||||||.+||.|++ ++++|
T Consensus 90 Ftv~eVV~mGr~p~~~-g~~~~e~~~i~~~ala~~d~~~la~R~y-----~~LSGGEqQRVqlARvLaQl~~~v~~~r~L 163 (259)
T COG4559 90 FTVQEVVQMGRIPHRS-GREPEEDERIAAQALAATDLSGLAGRDY-----RTLSGGEQQRVQLARVLAQLWPPVPSGRWL 163 (259)
T ss_pred eEHHHHHHhccccccc-CCCchhhHHHHHHHHHHcChhhhhccch-----hhcCchHHHHHHHHHHHHHccCCCCCCceE
Confidence 8999999998532111 1112244556789999999998887654 4799999999999999975 34699
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCCC--chHHHHHHHHhc
Q 001400 991 FMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGS--KSCELIKYFEVE 1068 (1085)
Q Consensus 991 llDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~~--~~~~~~~~~~~~ 1068 (1085)
|||||||+||...+..++++.|+++++|..|++|-||++. ...+|||+++|+ +|+++..|+..+ ..+.+-..|..-
T Consensus 164 ~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNL-AA~YaDrivll~-~Grv~a~g~p~~vlt~Etl~~vyg~~ 241 (259)
T COG4559 164 FLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNL-AAQYADRIVLLH-QGRVIASGSPQDVLTDETLERVYGAD 241 (259)
T ss_pred EecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchH-HHHhhheeeeee-CCeEeecCCHHHhcCHHHHHHHhCCc
Confidence 9999999999999999999999999999999999999986 778999999998 579999998766 345666677654
Q ss_pred cccccCCccceeeee
Q 001400 1069 SFMFKSPRIFYCQIL 1083 (1085)
Q Consensus 1069 ~g~~~~~~~~~~~~~ 1083 (1085)
-.|.+-|.-..++|+
T Consensus 242 ~~V~~~P~~~~P~V~ 256 (259)
T COG4559 242 IRVGRHPARNIPLVL 256 (259)
T ss_pred eeeeeccCCCCCeee
Confidence 466677776766665
|
|
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-38 Score=334.33 Aligned_cols=201 Identities=24% Similarity=0.432 Sum_probs=169.8
Q ss_pred cCCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCChhcccceEEEEccCCCCCCCCC
Q 001400 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLT 918 (1085)
Q Consensus 839 ~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gy~~Q~~~~~~~~t 918 (1085)
+++..+|+|+||++++|++++|+|+||||||||+++|+|..+ +.+|+|.++|.++.. ..++.++|++|++.+++.+|
T Consensus 10 ~~~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~-~~~~~i~~~~q~~~~~~~~t 86 (210)
T cd03269 10 FGRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIIL--PDSGEVLFDGKPLDI-AARNRIGYLPEERGLYPKMK 86 (210)
T ss_pred ECCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCCchhH-HHHccEEEeccCCcCCcCCc
Confidence 345679999999999999999999999999999999999865 468999999987643 34567999999998888999
Q ss_pred HHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCC
Q 001400 919 VLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSG 998 (1085)
Q Consensus 919 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEPtsg 998 (1085)
++||+.+....+. .......+.++++++.+++.+..+... .+||+|||||++||+||+.+|++|+|||||+|
T Consensus 87 v~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~la~al~~~p~~lllDEP~~~ 158 (210)
T cd03269 87 VIDQLVYLAQLKG---LKKEEARRRIDEWLERLELSEYANKRV-----EELSKGNQQKVQFIAAVIHDPELLILDEPFSG 158 (210)
T ss_pred HHHHHHHHHHHcC---CChHHHHHHHHHHHHHcCChHHHhCcH-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcC
Confidence 9999987654332 122333456788999999876655433 57999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEecCcEEEEec
Q 001400 999 LDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAG 1052 (1085)
Q Consensus 999 LD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g 1052 (1085)
||+.++..+.+.|+++.++|+|||++||+++ ++.+.+|++++|++ |++++.|
T Consensus 159 LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~-g~i~~~~ 210 (210)
T cd03269 159 LDPVNVELLKDVIRELARAGKTVILSTHQME-LVEELCDRVLLLNK-GRAVLYG 210 (210)
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhhhEEEEEeC-CEEEecC
Confidence 9999999999999998777899999999986 46678999999985 6777653
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-36 Score=367.54 Aligned_cols=215 Identities=27% Similarity=0.436 Sum_probs=174.2
Q ss_pred ccceeeeccceeeeeccccccccccccCCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcC
Q 001400 813 QPLSMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISG 892 (1085)
Q Consensus 813 ~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g 892 (1085)
.+-.+.++|++|.++. .+..+|+|+|++|+|||.+||+|+||||||||+|+|.|... +..|+|.+||
T Consensus 468 ~~g~I~~~nvsf~y~~-----------~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~--p~~G~I~~dg 534 (709)
T COG2274 468 LQGEIEFENVSFRYGP-----------DDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYK--PQQGRILLDG 534 (709)
T ss_pred cCceEEEEEEEEEeCC-----------CCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECC
Confidence 3446888888887742 23479999999999999999999999999999999999877 5799999999
Q ss_pred ccCC---hhcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCc-------ccccccC
Q 001400 893 YPKR---QETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTS-------LSGALIG 962 (1085)
Q Consensus 893 ~~~~---~~~~~~~~gy~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~ 962 (1085)
+++. ...+|+.+|||+|++.++.+ |++||+.++. | +.+ .+.+.++.+..+..+ -.+..++
T Consensus 535 ~dl~~i~~~~lR~~ig~V~Q~~~Lf~g-SI~eNi~l~~----p-~~~----~e~i~~A~~~ag~~~fI~~lP~gy~t~v~ 604 (709)
T COG2274 535 VDLNDIDLASLRRQVGYVLQDPFLFSG-SIRENIALGN----P-EAT----DEEIIEAAQLAGAHEFIENLPMGYDTPVG 604 (709)
T ss_pred EeHHhcCHHHHHhheeEEcccchhhcC-cHHHHHhcCC----C-CCC----HHHHHHHHHHhCcHHHHHhcccccccccc
Confidence 9865 46789999999999988755 9999998753 2 111 122333333333322 1233344
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEE
Q 001400 963 LPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFM 1042 (1085)
Q Consensus 963 ~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l 1042 (1085)
.. +.+||||||||++|||||+++|+||+||||||+||+++++.|++.|.++. .|+|+|+++|+++ .++.||+++||
T Consensus 605 E~-G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~-~~~T~I~IaHRl~--ti~~adrIiVl 680 (709)
T COG2274 605 EG-GANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQIL-QGRTVIIIAHRLS--TIRSADRIIVL 680 (709)
T ss_pred cC-CCCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHh-cCCeEEEEEccch--HhhhccEEEEc
Confidence 33 45799999999999999999999999999999999999999999999974 6899999999985 67899999999
Q ss_pred ecCcEEEEecCCC
Q 001400 1043 KRGGELIYAGPLG 1055 (1085)
Q Consensus 1043 ~~gG~~~~~g~~~ 1055 (1085)
+ +|+++..|+-.
T Consensus 681 ~-~Gkiv~~gs~~ 692 (709)
T COG2274 681 D-QGKIVEQGSHE 692 (709)
T ss_pred c-CCceeccCCHH
Confidence 8 57999999853
|
|
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-38 Score=358.49 Aligned_cols=204 Identities=24% Similarity=0.348 Sum_probs=176.9
Q ss_pred CCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCCh-hcccceEEEEccCCCCCCCCC
Q 001400 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ-ETFARISGYCEQNDIHSPGLT 918 (1085)
Q Consensus 840 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~-~~~~~~~gy~~Q~~~~~~~~t 918 (1085)
++..+|+|+||+|++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++.. ...+|.+||++|++.++|.+|
T Consensus 25 ~~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~--p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~lt 102 (375)
T PRK09452 25 DGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFET--PDSGRIMLDGQDITHVPAENRHVNTVFQSYALFPHMT 102 (375)
T ss_pred CCeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEECCCCCHHHCCEEEEecCcccCCCCC
Confidence 44679999999999999999999999999999999999876 568999999987643 223577999999999999999
Q ss_pred HHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCC
Q 001400 919 VLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSG 998 (1085)
Q Consensus 919 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEPtsg 998 (1085)
|+||+.|+...+. ....+..+.++++++.+++.++.+... .+|||||||||+|||||+.+|++|||||||++
T Consensus 103 v~eNi~~~l~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~p-----~~LSgGq~QRVaLARaL~~~P~llLLDEP~s~ 174 (375)
T PRK09452 103 VFENVAFGLRMQK---TPAAEITPRVMEALRMVQLEEFAQRKP-----HQLSGGQQQRVAIARAVVNKPKVLLLDESLSA 174 (375)
T ss_pred HHHHHHHHHhhcC---CCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCc
Confidence 9999998754331 233444566889999999988777653 57999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHC-CceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCC
Q 001400 999 LDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1085)
Q Consensus 999 LD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~ 1055 (1085)
||+..+..+.+.|+++.++ |.|+|++|||++ ++...+|++++|++ |+++..|+..
T Consensus 175 LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~-ea~~laDri~vl~~-G~i~~~g~~~ 230 (375)
T PRK09452 175 LDYKLRKQMQNELKALQRKLGITFVFVTHDQE-EALTMSDRIVVMRD-GRIEQDGTPR 230 (375)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcCHH
Confidence 9999999999999999764 999999999986 57888999999985 7999888754
|
|
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-38 Score=336.41 Aligned_cols=193 Identities=25% Similarity=0.325 Sum_probs=164.5
Q ss_pred eEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCCh------hcccceEEEEccCCCCCC
Q 001400 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ------ETFARISGYCEQNDIHSP 915 (1085)
Q Consensus 842 ~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~------~~~~~~~gy~~Q~~~~~~ 915 (1085)
..+|+|+||+|++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.++.. ..+++.++|++|++.+++
T Consensus 16 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 93 (216)
T TIGR00960 16 QPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEK--PTRGKIRFNGQDLTRLRGREIPFLRRHIGMVFQDHRLLS 93 (216)
T ss_pred eeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEehhhcChhHHHHHHHhceEEecCccccc
Confidence 469999999999999999999999999999999999866 468999999987532 124567999999999889
Q ss_pred CCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCC
Q 001400 916 GLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEP 995 (1085)
Q Consensus 916 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEP 995 (1085)
.+||+||+.+....+. .......+.++++++.+++.+..+... .+||||||||++|||||+.+|++||||||
T Consensus 94 ~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~laral~~~p~llllDEP 165 (216)
T TIGR00960 94 DRTVYDNVAFPLRIIG---VPPRDANERVSAALEKVGLEGKAHALP-----MQLSGGEQQRVAIARAIVHKPPLLLADEP 165 (216)
T ss_pred cccHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 9999999988654321 122334456788999999977665543 47999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEecC
Q 001400 996 TSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 1045 (1085)
Q Consensus 996 tsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~g 1045 (1085)
|+|||+.++..+.+.|++++++|.|||++||+++ .+.+.||++++|++|
T Consensus 166 t~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~-~~~~~~d~i~~l~~G 214 (216)
T TIGR00960 166 TGNLDPELSRDIMRLFEEFNRRGTTVLVATHDIN-LVETYRHRTLTLSRG 214 (216)
T ss_pred CCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEeCC
Confidence 9999999999999999998777999999999986 466789999999864
|
|
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-38 Score=338.87 Aligned_cols=206 Identities=24% Similarity=0.337 Sum_probs=172.9
Q ss_pred ccCCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCCh---hc-ccceEEEEccCCCC
Q 001400 838 LEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ET-FARISGYCEQNDIH 913 (1085)
Q Consensus 838 ~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~---~~-~~~~~gy~~Q~~~~ 913 (1085)
.+++..+|+|+||++++|++++|+|+||||||||+++|+|..+ +.+|+|.++|.+... .. .++.++|++|++.+
T Consensus 9 ~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~ 86 (232)
T cd03218 9 RYGKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVK--PDSGKILLDGQDITKLPMHKRARLGIGYLPQEASI 86 (232)
T ss_pred EeCCEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEecccCCHhHHHhccEEEecCCccc
Confidence 3445679999999999999999999999999999999999876 468999999987532 12 23569999999999
Q ss_pred CCCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q 001400 914 SPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMD 993 (1085)
Q Consensus 914 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlD 993 (1085)
++.+|++||+.+....+. .........++++++.+++.+..+... ..||+|||||++|||||+.+|++|+||
T Consensus 87 ~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~la~al~~~p~llllD 158 (232)
T cd03218 87 FRKLTVEENILAVLEIRG---LSKKEREEKLEELLEEFHITHLRKSKA-----SSLSGGERRRVEIARALATNPKFLLLD 158 (232)
T ss_pred cccCcHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEec
Confidence 999999999987643221 122333456788999999876655543 579999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCC
Q 001400 994 EPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1085)
Q Consensus 994 EPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~ 1055 (1085)
|||+|||+.+++.+.+.|+++.++|.|||++||+++ ++.+.+|++++|++ |++++.|+..
T Consensus 159 EPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~ 218 (232)
T cd03218 159 EPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVR-ETLSITDRAYIIYE-GKVLAEGTPE 218 (232)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CeEEEEeCHH
Confidence 999999999999999999998777999999999986 57888999999985 7888888754
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-37 Score=354.71 Aligned_cols=210 Identities=27% Similarity=0.382 Sum_probs=177.7
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCC-CceEEEEccCCCCCCCCCH
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP-PRTSAYVSQQDWQVAEMTV 226 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 226 (1085)
+.+|+|+|+.|++||+++|+|||||||||||++|+|.++|+ +|+|+++|+++....+ ++.++||+|++.+++++||
T Consensus 15 ~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~---~G~I~i~g~~i~~~~~~~r~i~~v~Q~~~l~p~~tv 91 (353)
T PRK10851 15 TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQT---SGHIRFHGTDVSRLHARDRKVGFVFQHYALFRHMTV 91 (353)
T ss_pred eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHHHCCEEEEecCcccCCCCcH
Confidence 35999999999999999999999999999999999998876 9999999998765433 3679999999999999999
Q ss_pred HHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCccccc
Q 001400 227 RETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKG 306 (1085)
Q Consensus 227 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 306 (1085)
+||+.|+.+......... . .+...+++++++.+||++..|..+ ..
T Consensus 92 ~eni~~~~~~~~~~~~~~------~------------------------~~~~~~~~~~l~~~~L~~~~~~~~-----~~ 136 (353)
T PRK10851 92 FDNIAFGLTVLPRRERPN------A------------------------AAIKAKVTQLLEMVQLAHLADRYP-----AQ 136 (353)
T ss_pred HHHHHhhhhhcccccCCC------H------------------------HHHHHHHHHHHHHcCCchhhhCCh-----hh
Confidence 999999754311000000 0 001234788999999988776554 56
Q ss_pred CchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEecCCeE
Q 001400 307 ISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQI 386 (1085)
Q Consensus 307 LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~~G~i 386 (1085)
|||||||||+|||||+.+|++|+|||||+|||+.++.++.+.|+++.+.. +.+++.++|+..++..++|+|++|++|++
T Consensus 137 LSgGq~QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~-g~tii~vTHd~~ea~~~~Dri~vl~~G~i 215 (353)
T PRK10851 137 LSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEEL-KFTSVFVTHDQEEAMEVADRVVVMSQGNI 215 (353)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 99999999999999999999999999999999999999999999987643 45566688999999999999999999999
Q ss_pred EEecChhhHH
Q 001400 387 VYQGPRVSVL 396 (1085)
Q Consensus 387 v~~G~~~~~~ 396 (1085)
++.|+++++.
T Consensus 216 ~~~g~~~~i~ 225 (353)
T PRK10851 216 EQAGTPDQVW 225 (353)
T ss_pred EEEcCHHHHH
Confidence 9999998874
|
|
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-38 Score=333.33 Aligned_cols=207 Identities=27% Similarity=0.377 Sum_probs=180.2
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCC----CCCCCceEEEEccCC-CCCC
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFK----EFVPPRTSAYVSQQD-WQVA 222 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~----~~~~~~~~~yv~Q~d-~~~~ 222 (1085)
..+|+|+|+.|++|+.++|+||||||||||+++|+|++.|. +|+|.++|.+.. ....++.+|||+|++ .++.
T Consensus 17 ~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~---~G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~~ 93 (235)
T COG1122 17 KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPT---SGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLF 93 (235)
T ss_pred ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCC---CCEEEECCeeccchhhHHHhhcceEEEEECcccccc
Confidence 57999999999999999999999999999999999999886 899999999865 223468899999996 4577
Q ss_pred CCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCc
Q 001400 223 EMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDE 302 (1085)
Q Consensus 223 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 302 (1085)
.-||.|.++|+....+.... +...+++++++.+||.+.++..
T Consensus 94 ~~tV~~evafg~~n~g~~~~----------------------------------e~~~rv~~~l~~vgl~~~~~r~---- 135 (235)
T COG1122 94 GPTVEDEVAFGLENLGLPRE----------------------------------EIEERVAEALELVGLEELLDRP---- 135 (235)
T ss_pred cCcHHHHHhhchhhcCCCHH----------------------------------HHHHHHHHHHHHcCchhhccCC----
Confidence 78999999999876653210 1234689999999999987754
Q ss_pred ccccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEec
Q 001400 303 MLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLS 382 (1085)
Q Consensus 303 ~~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~ 382 (1085)
+..|||||||||+||.+|+.+|++|+|||||||||+..+.++++.++++.+.. +.++|.++|+.+.+.+++|++++|+
T Consensus 136 -p~~LSGGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~-~~tii~~tHd~~~~~~~ad~v~vl~ 213 (235)
T COG1122 136 -PFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEG-GKTIIIVTHDLELVLEYADRVVVLD 213 (235)
T ss_pred -ccccCCcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcC-CCeEEEEeCcHHHHHhhCCEEEEEE
Confidence 45799999999999999999999999999999999999999999999998753 4556668899999999999999999
Q ss_pred CCeEEEecChhhHHH
Q 001400 383 EGQIVYQGPRVSVLD 397 (1085)
Q Consensus 383 ~G~iv~~G~~~~~~~ 397 (1085)
+|+++++|++.++.+
T Consensus 214 ~G~i~~~g~p~~i~~ 228 (235)
T COG1122 214 DGKILADGDPAEIFN 228 (235)
T ss_pred CCEEeecCCHHHHhh
Confidence 999999999877653
|
|
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=350.36 Aligned_cols=210 Identities=25% Similarity=0.360 Sum_probs=178.4
Q ss_pred ccccccCCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCCh--hcccceEEEEccCC
Q 001400 834 QEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ--ETFARISGYCEQND 911 (1085)
Q Consensus 834 ~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~--~~~~~~~gy~~Q~~ 911 (1085)
+.++.+++..+|+|+||++++||++||+||||||||||+++|+|... +.+|+|.++|.+... ...++.+||++|++
T Consensus 7 ~l~~~~~~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~--~~~G~i~i~g~~~~~~~~~~~~~ig~~~q~~ 84 (301)
T TIGR03522 7 SLTKLYGTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLP--PDSGSVQVCGEDVLQNPKEVQRNIGYLPEHN 84 (301)
T ss_pred EEEEEECCEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEcccChHHHHhceEEecCCC
Confidence 33444456789999999999999999999999999999999999876 568999999987643 23466799999999
Q ss_pred CCCCCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEE
Q 001400 912 IHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVF 991 (1085)
Q Consensus 912 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~ill 991 (1085)
.+++.+|+.||+.+.+.++. ....+..+.++++++.+++.+..+..+ ..||+|||||++||+||+.+|++||
T Consensus 85 ~l~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~lli 156 (301)
T TIGR03522 85 PLYLDMYVREYLQFIAGIYG---MKGQLLKQRVEEMIELVGLRPEQHKKI-----GQLSKGYRQRVGLAQALIHDPKVLI 156 (301)
T ss_pred CCCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHCCCchHhcCch-----hhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99999999999988765432 122333456789999999988776654 4799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCCC
Q 001400 992 MDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGS 1056 (1085)
Q Consensus 992 lDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~~ 1056 (1085)
|||||+|||+.++..+++.|++++ +++|||++||+++ ++.+.||++++|++ |++++.|+..+
T Consensus 157 LDEPt~gLD~~~~~~l~~~l~~~~-~~~tiii~sH~l~-~~~~~~d~i~~l~~-G~i~~~g~~~~ 218 (301)
T TIGR03522 157 LDEPTTGLDPNQLVEIRNVIKNIG-KDKTIILSTHIMQ-EVEAICDRVIIINK-GKIVADKKLDE 218 (301)
T ss_pred EcCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEEeCCHHH
Confidence 999999999999999999999986 4799999999986 57788999999985 79999888653
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-37 Score=338.32 Aligned_cols=207 Identities=29% Similarity=0.381 Sum_probs=171.9
Q ss_pred cCCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCChh---c-ccceEEEEccCCCCC
Q 001400 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE---T-FARISGYCEQNDIHS 914 (1085)
Q Consensus 839 ~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~---~-~~~~~gy~~Q~~~~~ 914 (1085)
+++..+|+|+||+|++||++||+|+||||||||+++|+|..+ +.+|+|.++|.++... . .++.++|++|++.++
T Consensus 10 ~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~ 87 (236)
T cd03219 10 FGGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLR--PTSGSVLFDGEDITGLPPHEIARLGIGRTFQIPRLF 87 (236)
T ss_pred ECCEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCC--CCCceEEECCEECCCCCHHHHHhcCEEEEecccccc
Confidence 344679999999999999999999999999999999999866 4689999999876431 2 235699999999999
Q ss_pred CCCCHHHHHHHhhhhcCCCc-------ccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCC
Q 001400 915 PGLTVLESLLFSAWLRLPSE-------IELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANP 987 (1085)
Q Consensus 915 ~~~tv~e~l~~~~~~~~~~~-------~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p 987 (1085)
+.+||+||+.+......... .......+.++++++.+++.+..+... ..||||||||++|||||+.+|
T Consensus 88 ~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~~p 162 (236)
T cd03219 88 PELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPA-----GELSYGQQRRLEIARALATDP 162 (236)
T ss_pred cCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCCh-----hhCCHHHHHHHHHHHHHhcCC
Confidence 99999999987653321110 012333456788999999876655543 579999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCC
Q 001400 988 SIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1085)
Q Consensus 988 ~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~ 1054 (1085)
++|+|||||+|||+.++..+++.|+++.++|+|||++||+++ ++.+.||++++|++ |+++..|+.
T Consensus 163 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 227 (236)
T cd03219 163 KLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMD-VVMSLADRVTVLDQ-GRVIAEGTP 227 (236)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEeC-CEEEeecCH
Confidence 999999999999999999999999998777999999999987 46778999999985 688888764
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-38 Score=320.59 Aligned_cols=213 Identities=27% Similarity=0.377 Sum_probs=177.1
Q ss_pred cccccccccCCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCCh----hcccceEEE
Q 001400 831 ELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ----ETFARISGY 906 (1085)
Q Consensus 831 ~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~----~~~~~~~gy 906 (1085)
+++++...|++.++|++|||++++||+++|+|+|||||||||++|+|..+ +.+|+|.++|.+++. +..++.++|
T Consensus 5 ~v~~l~~~YG~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~--~~~G~I~~~G~dit~~p~~~r~r~Gi~~ 82 (237)
T COG0410 5 EVENLSAGYGKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVR--PRSGRIIFDGEDITGLPPHERARLGIAY 82 (237)
T ss_pred eEEeEeecccceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeeEEECCeecCCCCHHHHHhCCeEe
Confidence 44556667888999999999999999999999999999999999999876 458999999998753 345677999
Q ss_pred EccCCCCCCCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcC-CCcccccccCCCCCCCCCHHHHHHHHHHHHHhc
Q 001400 907 CEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVE-LTSLSGALIGLPGINGLSTEQRKRLTIAVELVA 985 (1085)
Q Consensus 907 ~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~ 985 (1085)
|||....||.+||+|||..++..+... ......++++.+++- |.+.++... ..|||||||.|+|||||+.
T Consensus 83 VPegR~iF~~LTVeENL~~g~~~~~~~----~~~~~~~e~v~~lFP~Lker~~~~a-----G~LSGGEQQMLAiaRALm~ 153 (237)
T COG0410 83 VPEGRRIFPRLTVEENLLLGAYARRDK----EAQERDLEEVYELFPRLKERRNQRA-----GTLSGGEQQMLAIARALMS 153 (237)
T ss_pred CcccccchhhCcHHHHHhhhhhccccc----ccccccHHHHHHHChhHHHHhcCcc-----cCCChHHHHHHHHHHHHhc
Confidence 999999999999999999886544221 111122566666653 333444433 4799999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCCC
Q 001400 986 NPSIVFMDEPTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGS 1056 (1085)
Q Consensus 986 ~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~~ 1056 (1085)
+|++|+|||||.||-|.-.+.|.++|+++.++ |.||+++-++... ..+.+||.++|.+ |++++.|+..+
T Consensus 154 ~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~-Al~iaDr~yvle~-Griv~~G~~~e 223 (237)
T COG0410 154 RPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARF-ALEIADRGYVLEN-GRIVLSGTAAE 223 (237)
T ss_pred CCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHH-HHHhhCEEEEEeC-CEEEEecCHHH
Confidence 99999999999999999999999999999866 7799999998764 7788999999985 79999998654
|
|
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=357.72 Aligned_cols=206 Identities=27% Similarity=0.376 Sum_probs=176.3
Q ss_pred ccCCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCCh-hcccceEEEEccCCCCCCC
Q 001400 838 LEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ-ETFARISGYCEQNDIHSPG 916 (1085)
Q Consensus 838 ~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~-~~~~~~~gy~~Q~~~~~~~ 916 (1085)
.+++..+|+|+||+|++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++.. ...++.+||++|++.+++.
T Consensus 12 ~~~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~--p~~G~I~~~g~~i~~~~~~~~~i~~v~Q~~~l~~~ 89 (369)
T PRK11000 12 AYGDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLED--ITSGDLFIGEKRMNDVPPAERGVGMVFQSYALYPH 89 (369)
T ss_pred EeCCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEECCCCCHhHCCEEEEeCCcccCCC
Confidence 3455679999999999999999999999999999999999876 468999999987643 1234679999999999999
Q ss_pred CCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Q 001400 917 LTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPT 996 (1085)
Q Consensus 917 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEPt 996 (1085)
+||+||+.|+...+. ....+..+.++++++.+++.+..+... .+|||||||||+|||||+.+|++|||||||
T Consensus 90 ~tv~eni~~~~~~~~---~~~~~~~~~~~~~l~~lgL~~~~~~~~-----~~LSgGq~QRvaLAraL~~~P~lLLLDEPt 161 (369)
T PRK11000 90 LSVAENMSFGLKLAG---AKKEEINQRVNQVAEVLQLAHLLDRKP-----KALSGGQRQRVAIGRTLVAEPSVFLLDEPL 161 (369)
T ss_pred CCHHHHHHhHHhhcC---CCHHHHHHHHHHHHHHcCChhhhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 999999998754332 223344567889999999987766543 579999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHC-CceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCC
Q 001400 997 SGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1085)
Q Consensus 997 sgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~ 1055 (1085)
+|||+.++..+.+.|+++.++ |.|||++|||++ ++...+|++++|++ |+++..|+..
T Consensus 162 s~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~-~~~~~~d~i~vl~~-G~i~~~g~~~ 219 (369)
T PRK11000 162 SNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLDA-GRVAQVGKPL 219 (369)
T ss_pred ccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcCHH
Confidence 999999999999999998764 899999999986 57788999999985 7899888754
|
|
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=334.89 Aligned_cols=198 Identities=28% Similarity=0.428 Sum_probs=169.0
Q ss_pred EEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCCh--hcccceEEEEccCCCCCCCCCHH
Q 001400 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ--ETFARISGYCEQNDIHSPGLTVL 920 (1085)
Q Consensus 843 ~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~--~~~~~~~gy~~Q~~~~~~~~tv~ 920 (1085)
.+|+|+||+|++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.++.. ..+++.+||++|++.+++.+|++
T Consensus 19 ~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 96 (218)
T cd03266 19 QAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLE--PDAGFATVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTAR 96 (218)
T ss_pred eeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC--CCCceEEECCEEcccCHHHHHhhEEEecCCcccCcCCCHH
Confidence 69999999999999999999999999999999999866 468999999987642 23467799999999888889999
Q ss_pred HHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCC
Q 001400 921 ESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLD 1000 (1085)
Q Consensus 921 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEPtsgLD 1000 (1085)
||+.+....+. .......+.++++++.+++.+..+... ..||+|||||++|||||+.+|++|+|||||+|||
T Consensus 97 e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~illlDEPt~~LD 168 (218)
T cd03266 97 ENLEYFAGLYG---LKGDELTARLEELADRLGMEELLDRRV-----GGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLD 168 (218)
T ss_pred HHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCHHHHhhhh-----hhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcCCC
Confidence 99987543321 222334456788999999977666543 5799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEecCcEEEEec
Q 001400 1001 ARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAG 1052 (1085)
Q Consensus 1001 ~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g 1052 (1085)
+.++..+.+.|+++.++|+|||++||+++ ++.+.+|++++|++ |++++.|
T Consensus 169 ~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~i~~l~~-G~i~~~~ 218 (218)
T cd03266 169 VMATRALREFIRQLRALGKCILFSTHIMQ-EVERLCDRVVVLHR-GRVVYEG 218 (218)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhcCEEEEEEC-CEEeecC
Confidence 99999999999999777999999999986 47778999999985 6777643
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-37 Score=338.15 Aligned_cols=208 Identities=27% Similarity=0.374 Sum_probs=171.8
Q ss_pred cCCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCChh-cccceEEEEccCCCCCCCC
Q 001400 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE-TFARISGYCEQNDIHSPGL 917 (1085)
Q Consensus 839 ~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~-~~~~~~gy~~Q~~~~~~~~ 917 (1085)
+++..+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.++|.++... ..++.++|++|++.+++..
T Consensus 12 ~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~ 89 (239)
T cd03296 12 FGDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLER--PDSGTILFGGEDATDVPVQERNVGFVFQHYALFRHM 89 (239)
T ss_pred ECCEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECCcCCccccceEEEecCCcccCCC
Confidence 345679999999999999999999999999999999999866 4689999999875432 2245799999999888899
Q ss_pred CHHHHHHHhhhhcCC-CcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Q 001400 918 TVLESLLFSAWLRLP-SEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPT 996 (1085)
Q Consensus 918 tv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEPt 996 (1085)
||+||+.+....+.. .........+.++++++.+++.+..+... ..||+|||||++|||||+.+|++|+|||||
T Consensus 90 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~la~al~~~p~llllDEP~ 164 (239)
T cd03296 90 TVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYP-----AQLSGGQRQRVALARALAVEPKVLLLDEPF 164 (239)
T ss_pred CHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 999999876432211 00112233455788899999876655543 479999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHC-CceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCC
Q 001400 997 SGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1085)
Q Consensus 997 sgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~ 1055 (1085)
+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|++++|++ |++++.|+..
T Consensus 165 ~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~ 222 (239)
T cd03296 165 GALDAKVRKELRRWLRRLHDELHVTTVFVTHDQE-EALEVADRVVVMNK-GRIEQVGTPD 222 (239)
T ss_pred ccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CeEEEecCHH
Confidence 999999999999999999765 899999999986 46778999999985 7888888753
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-37 Score=356.51 Aligned_cols=204 Identities=25% Similarity=0.365 Sum_probs=176.9
Q ss_pred CCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCCh-hcccceEEEEccCCCCCCCCC
Q 001400 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ-ETFARISGYCEQNDIHSPGLT 918 (1085)
Q Consensus 840 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~-~~~~~~~gy~~Q~~~~~~~~t 918 (1085)
++..+|+|+||+|++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++.. ...+|.+||++|++.++|.+|
T Consensus 30 ~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~--p~~G~I~i~g~~i~~~~~~~r~ig~vfQ~~~lfp~lt 107 (377)
T PRK11607 30 DGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQ--PTAGQIMLDGVDLSHVPPYQRPINMMFQSYALFPHMT 107 (377)
T ss_pred CCEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEECCCCCHHHCCEEEEeCCCccCCCCC
Confidence 44679999999999999999999999999999999999876 568999999987643 235678999999999999999
Q ss_pred HHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCC
Q 001400 919 VLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSG 998 (1085)
Q Consensus 919 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEPtsg 998 (1085)
|.||+.|+...+. ....+..+.++++++.+++.++.+... .+|||||||||+|||||+.+|++|+|||||++
T Consensus 108 v~eNi~~~l~~~~---~~~~~~~~~v~~~l~~l~L~~~~~~~~-----~~LSgGq~QRVaLARAL~~~P~lLLLDEP~s~ 179 (377)
T PRK11607 108 VEQNIAFGLKQDK---LPKAEIASRVNEMLGLVHMQEFAKRKP-----HQLSGGQRQRVALARSLAKRPKLLLLDEPMGA 179 (377)
T ss_pred HHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 9999998754331 233445567889999999987776653 57999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHH-CCceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCC
Q 001400 999 LDARAAAIVMRTVRNIVN-TGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1085)
Q Consensus 999 LD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~ 1055 (1085)
||+.++..+.+.|+++.+ .|.|+|++|||++ ++...+|++++|++ |+++..|+..
T Consensus 180 LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~laDri~vl~~-G~i~~~g~~~ 235 (377)
T PRK11607 180 LDKKLRDRMQLEVVDILERVGVTCVMVTHDQE-EAMTMAGRIAIMNR-GKFVQIGEPE 235 (377)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEeC-CEEEEEcCHH
Confidence 999999999999999865 4899999999986 57889999999985 7999998754
|
|
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-37 Score=332.57 Aligned_cols=201 Identities=27% Similarity=0.389 Sum_probs=169.0
Q ss_pred CCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCChh-cccceEEEEccCCCCCCCCC
Q 001400 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE-TFARISGYCEQNDIHSPGLT 918 (1085)
Q Consensus 840 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~-~~~~~~gy~~Q~~~~~~~~t 918 (1085)
++..+|+|+||+|++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.++... ..++.++|++|++.+++..|
T Consensus 11 ~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~v~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~t 88 (213)
T cd03301 11 GNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEE--PTSGRIYIGGRDVTDLPPKDRDIAMVFQNYALYPHMT 88 (213)
T ss_pred CCeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECCcCCcccceEEEEecChhhccCCC
Confidence 44579999999999999999999999999999999999865 4689999999876432 22457999999998888899
Q ss_pred HHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCC
Q 001400 919 VLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSG 998 (1085)
Q Consensus 919 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEPtsg 998 (1085)
++||+.+....+. ....+..+.++++++.+++.+..+..+ ..||+|||||++|||||+.+|++|+|||||+|
T Consensus 89 v~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qr~~laral~~~p~llllDEPt~~ 160 (213)
T cd03301 89 VYDNIAFGLKLRK---VPKDEIDERVREVAELLQIEHLLDRKP-----KQLSGGQRQRVALGRAIVREPKVFLMDEPLSN 160 (213)
T ss_pred HHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCHHHHhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence 9999987643221 122334456788899999876665543 57999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHC-CceEEEEecCccHHHHHhcCEEEEEecCcEEEEec
Q 001400 999 LDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAG 1052 (1085)
Q Consensus 999 LD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g 1052 (1085)
||+.++..+++.|++++++ |.|||++||+++ ++...+|++++|++ |++++.|
T Consensus 161 LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~-g~~~~~g 213 (213)
T cd03301 161 LDAKLRVQMRAELKRLQQRLGTTTIYVTHDQV-EAMTMADRIAVMND-GQIQQIG 213 (213)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEEC-CEEEecC
Confidence 9999999999999999764 899999999986 46778999999985 6887765
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-38 Score=306.82 Aligned_cols=197 Identities=28% Similarity=0.363 Sum_probs=172.8
Q ss_pred eeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCCh-hcccceEEEEccCCCCCCCCCHHHHHHH
Q 001400 847 NVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ-ETFARISGYCEQNDIHSPGLTVLESLLF 925 (1085)
Q Consensus 847 ~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~-~~~~~~~gy~~Q~~~~~~~~tv~e~l~~ 925 (1085)
..+++|.+||++||+||||||||||+++|+|... +.+|+|.|+|.+... ....|-+++++|+.++|..+||.+|+-+
T Consensus 17 ~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~--P~~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNigL 94 (231)
T COG3840 17 RFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFET--PASGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGL 94 (231)
T ss_pred EEEEeecCCcEEEEECCCCccHHHHHHHHHhccC--CCCceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhcc
Confidence 5677899999999999999999999999999887 569999999998654 3456778999999999999999999988
Q ss_pred hhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHH
Q 001400 926 SAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAA 1005 (1085)
Q Consensus 926 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEPtsgLD~~~~~ 1005 (1085)
+.. |.-.-..+.++.++.+...+|+.++.+.+. .+||||||||+++||+|+++-+|++||||+|+|||.-+.
T Consensus 95 Gl~---P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP-----~~LSGGqRQRvALARclvR~~PilLLDEPFsALdP~LR~ 166 (231)
T COG3840 95 GLS---PGLKLNAEQREKVEAAAAQVGLAGFLKRLP-----GELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRA 166 (231)
T ss_pred cCC---cccccCHHHHHHHHHHHHHhChhhHhhhCc-----cccCchHHHHHHHHHHHhccCCeEEecCchhhcCHHHHH
Confidence 743 211123456677899999999998887764 479999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH-CCceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCC
Q 001400 1006 IVMRTVRNIVN-TGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1085)
Q Consensus 1006 ~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~ 1055 (1085)
.+..++.++++ ++.|++++||+|+ +....+|+++++++ |+|.+.|+..
T Consensus 167 eMl~Lv~~l~~E~~~TllmVTH~~~-Da~~ia~~~~fl~~-Gri~~~g~~~ 215 (231)
T COG3840 167 EMLALVSQLCDERKMTLLMVTHHPE-DAARIADRVVFLDN-GRIAAQGSTQ 215 (231)
T ss_pred HHHHHHHHHHHhhCCEEEEEeCCHH-HHHHhhhceEEEeC-CEEEeeccHH
Confidence 99999999985 5999999999998 78999999999985 7999999864
|
|
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-37 Score=354.14 Aligned_cols=203 Identities=26% Similarity=0.337 Sum_probs=173.5
Q ss_pred CeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCCh------hcccceEEEEccCCCCC
Q 001400 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ------ETFARISGYCEQNDIHS 914 (1085)
Q Consensus 841 ~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~------~~~~~~~gy~~Q~~~~~ 914 (1085)
+..+|+|+||+|++||++||+|+||||||||+++|+|..+ +.+|+|.++|.++.. ..+++.+||++|++.++
T Consensus 17 ~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~--p~~G~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~~~l~ 94 (343)
T PRK11153 17 TIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLER--PTSGRVLVDGQDLTALSEKELRKARRQIGMIFQHFNLL 94 (343)
T ss_pred ceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEECCcCCHHHHHHHhcCEEEEeCCCccC
Confidence 3579999999999999999999999999999999999876 468999999987642 12356799999999999
Q ss_pred CCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Q 001400 915 PGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDE 994 (1085)
Q Consensus 915 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDE 994 (1085)
+.+||+||+.+....+. .......+.++++++.+++.+..+... .+||||||||++|||||+.+|+||||||
T Consensus 95 ~~~tv~eni~~~~~~~~---~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSgGq~qRv~lAraL~~~p~iLlLDE 166 (343)
T PRK11153 95 SSRTVFDNVALPLELAG---TPKAEIKARVTELLELVGLSDKADRYP-----AQLSGGQKQRVAIARALASNPKVLLCDE 166 (343)
T ss_pred CCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 99999999988754331 223334456788999999987666543 5799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHC-CceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCC
Q 001400 995 PTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1085)
Q Consensus 995 PtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~ 1055 (1085)
||+|||+.++..+++.|+++.++ |+|||++||+++ ++.+.||++++|++ |++++.|+..
T Consensus 167 Pts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~-~i~~~~d~v~~l~~-G~i~~~g~~~ 226 (343)
T PRK11153 167 ATSALDPATTRSILELLKDINRELGLTIVLITHEMD-VVKRICDRVAVIDA-GRLVEQGTVS 226 (343)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcCHH
Confidence 99999999999999999999764 899999999986 47778999999985 7899888754
|
|
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-38 Score=332.25 Aligned_cols=192 Identities=28% Similarity=0.387 Sum_probs=162.5
Q ss_pred eEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCChhcccceEEEEccCCC-CCCCCCHH
Q 001400 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDI-HSPGLTVL 920 (1085)
Q Consensus 842 ~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gy~~Q~~~-~~~~~tv~ 920 (1085)
..+|+|+||+|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.....++.+||++|++. .+...|++
T Consensus 13 ~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv~ 90 (205)
T cd03226 13 TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIK--ESSGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSVR 90 (205)
T ss_pred CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEhhhHHhhcceEEEecChhhhhhhccHH
Confidence 579999999999999999999999999999999999876 568999999987654445667999999974 33467999
Q ss_pred HHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCC
Q 001400 921 ESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLD 1000 (1085)
Q Consensus 921 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEPtsgLD 1000 (1085)
||+.+...... .....++++++.+++.+..+..+ ..||+|||||++|||||+.+|++|+|||||+|||
T Consensus 91 e~l~~~~~~~~-------~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEPt~~LD 158 (205)
T cd03226 91 EELLLGLKELD-------AGNEQAETVLKDLDLYALKERHP-----LSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLD 158 (205)
T ss_pred HHHhhhhhhcC-------ccHHHHHHHHHHcCCchhcCCCc-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCC
Confidence 99987543211 01245788999999987666543 5799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEecCcEEE
Q 001400 1001 ARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELI 1049 (1085)
Q Consensus 1001 ~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~ 1049 (1085)
+.++..+++.|++++++|+|||++||+++ ++.+.+|++++|++ |+++
T Consensus 159 ~~~~~~l~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~-G~iv 205 (205)
T cd03226 159 YKNMERVGELIRELAAQGKAVIVITHDYE-FLAKVCDRVLLLAN-GAIV 205 (205)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEC
Confidence 99999999999999777999999999986 46678999999986 5653
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-36 Score=350.71 Aligned_cols=215 Identities=26% Similarity=0.430 Sum_probs=176.6
Q ss_pred ceeeeccceeeeeccccccccccccCCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCcc
Q 001400 815 LSMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYP 894 (1085)
Q Consensus 815 ~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~ 894 (1085)
-.+.|+|++|.++.. ++.++|+|+||+|+|||.+|||||||+||||+.++|.+... |.+|+|.+||+|
T Consensus 464 G~IeF~~VsFaYP~R----------p~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~--PtsG~IllDG~~ 531 (716)
T KOG0058|consen 464 GVIEFEDVSFAYPTR----------PDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYD--PTSGRILLDGVP 531 (716)
T ss_pred ceEEEEEeeeecCCC----------CCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcC--CCCCeEEECCee
Confidence 368888988888643 46789999999999999999999999999999999998766 679999999999
Q ss_pred CCh---hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCcccHHH-----HHHHHHHHHHHcCCCcccccccCCCCC
Q 001400 895 KRQ---ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELET-----QRAFVEEVMELVELTSLSGALIGLPGI 966 (1085)
Q Consensus 895 ~~~---~~~~~~~gy~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~~l~~~~~~~~~~~~~ 966 (1085)
+++ ..+++++|+|.|+|.+|.. ||+||+.|+.. ....++ +.+.+.+.+. ++.+-.+..+|..|
T Consensus 532 i~~~~~~~lr~~Ig~V~QEPvLFs~-sI~eNI~YG~~-----~~t~e~i~~AAk~ANah~FI~--~~p~gY~T~VGEkG- 602 (716)
T KOG0058|consen 532 ISDINHKYLRRKIGLVGQEPVLFSG-SIRENIAYGLD-----NATDEEIEAAAKMANAHEFIT--NFPDGYNTVVGEKG- 602 (716)
T ss_pred hhhcCHHHHHHHeeeeeccceeecc-cHHHHHhcCCC-----CCCHHHHHHHHHHhChHHHHH--hCccccccccCCcc-
Confidence 764 4578899999999999865 99999999853 112111 1112222222 34445566666554
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEecCc
Q 001400 967 NGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGG 1046 (1085)
Q Consensus 967 ~~LS~Gqrqrl~iA~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~gG 1046 (1085)
.+||||||||++|||||++||.||||||+||+||+++...|+++|.++. +++|||+|+|+++ ..+.+|+|+++++ |
T Consensus 603 ~qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~-~~rTVlvIAHRLS--TV~~Ad~Ivvi~~-G 678 (716)
T KOG0058|consen 603 SQLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLM-QGRTVLVIAHRLS--TVRHADQIVVIDK-G 678 (716)
T ss_pred ccccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhh-cCCeEEEEehhhh--HhhhccEEEEEcC-C
Confidence 4799999999999999999999999999999999999999999999876 4699999999976 6788999999985 7
Q ss_pred EEEEecCC
Q 001400 1047 ELIYAGPL 1054 (1085)
Q Consensus 1047 ~~~~~g~~ 1054 (1085)
++++.|.-
T Consensus 679 ~V~E~G~h 686 (716)
T KOG0058|consen 679 RVVEMGTH 686 (716)
T ss_pred eEEecccH
Confidence 99998853
|
|
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-37 Score=331.77 Aligned_cols=198 Identities=27% Similarity=0.408 Sum_probs=168.2
Q ss_pred cCCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCCh-hcccceEEEEccCCCCCCCC
Q 001400 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ-ETFARISGYCEQNDIHSPGL 917 (1085)
Q Consensus 839 ~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~-~~~~~~~gy~~Q~~~~~~~~ 917 (1085)
+++..+|+|+||++++|++++|+|+||||||||+++|+|..+ +.+|+|.++|.++.. ...++.++|++|++.+++..
T Consensus 10 ~~~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~ 87 (208)
T cd03268 10 YGKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIK--PDSGEITFDGKSYQKNIEALRRIGALIEAPGFYPNL 87 (208)
T ss_pred ECCeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCCcccchHHHHhhEEEecCCCccCccC
Confidence 345679999999999999999999999999999999999866 568999999987543 23456799999999888899
Q ss_pred CHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCC
Q 001400 918 TVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTS 997 (1085)
Q Consensus 918 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEPts 997 (1085)
|++||+.+....+. . ..+.++++++.+++.+..+... ..||+|||||++|||||+.+|++|+|||||+
T Consensus 88 tv~e~l~~~~~~~~---~----~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~llllDEPt~ 155 (208)
T cd03268 88 TARENLRLLARLLG---I----RKKRIDEVLDVVGLKDSAKKKV-----KGFSLGMKQRLGIALALLGNPDLLILDEPTN 155 (208)
T ss_pred cHHHHHHHHHHhcC---C----cHHHHHHHHHHcCCHHHHhhhH-----hhCCHHHHHHHHHHHHHhcCCCEEEECCCcc
Confidence 99999987643221 1 1245678899999977665543 4799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEecCcEEEEec
Q 001400 998 GLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAG 1052 (1085)
Q Consensus 998 gLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g 1052 (1085)
|||+.++..+++.|+++.++|+|||++||+++ .+.+.+|++++|++ |++++.|
T Consensus 156 ~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~v~~l~~-g~i~~~g 208 (208)
T cd03268 156 GLDPDGIKELRELILSLRDQGITVLISSHLLS-EIQKVADRIGIINK-GKLIEEG 208 (208)
T ss_pred cCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHhcCEEEEEEC-CEEEecC
Confidence 99999999999999998777899999999986 46678999999985 6887654
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-37 Score=335.65 Aligned_cols=206 Identities=25% Similarity=0.308 Sum_probs=170.0
Q ss_pred cCCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCC-----CCCeeeeEEEEcCccCCh-----hcccceEEEEc
Q 001400 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRK-----TGGIIEGDIYISGYPKRQ-----ETFARISGYCE 908 (1085)
Q Consensus 839 ~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~-----~~~~~~G~i~i~g~~~~~-----~~~~~~~gy~~ 908 (1085)
+++..+|+|+||+|++||+++|+|+||||||||+++|+|.. . +.+|+|.++|.++.. ..+++.+||++
T Consensus 10 ~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~ 87 (227)
T cd03260 10 YGDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGA--PDEGEVLLDGKDIYDLDVDVLELRRRVGMVF 87 (227)
T ss_pred cCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCC--CCCeEEEECCEEhhhcchHHHHHHhhEEEEe
Confidence 34557999999999999999999999999999999999976 4 568999999987532 23456799999
Q ss_pred cCCCCCCCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCC
Q 001400 909 QNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPS 988 (1085)
Q Consensus 909 Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~ 988 (1085)
|++.++ .+||+||+.+....+.. .......+.++++++.+++.+..+... .+.+||||||||++|||||+.+|+
T Consensus 88 q~~~~~-~~tv~e~l~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~---~~~~LSgG~~qrv~la~al~~~p~ 161 (227)
T cd03260 88 QKPNPF-PGSIYDNVAYGLRLHGI--KLKEELDERVEEALRKAALWDEVKDRL---HALGLSGGQQQRLCLARALANEPE 161 (227)
T ss_pred cCchhc-cccHHHHHHhHHHhcCC--CcHHHHHHHHHHHHHHcCCChHHhccC---CcccCCHHHHHHHHHHHHHhcCCC
Confidence 998887 79999999876433211 111223456788999999876554431 025799999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCC
Q 001400 989 IVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1085)
Q Consensus 989 illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~ 1055 (1085)
+|||||||+|||+.++..+++.|++++++ .|||++||+++ .+.+.||++++|++ |++++.|+..
T Consensus 162 llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~-~~~~~~d~i~~l~~-G~i~~~g~~~ 225 (227)
T cd03260 162 VLLLDEPTSALDPISTAKIEELIAELKKE-YTIVIVTHNMQ-QAARVADRTAFLLN-GRLVEFGPTE 225 (227)
T ss_pred EEEEeCCCccCCHHHHHHHHHHHHHHhhC-cEEEEEeccHH-HHHHhCCEEEEEeC-CEEEEecCcc
Confidence 99999999999999999999999999776 99999999986 46778999999985 6888888753
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-37 Score=339.30 Aligned_cols=205 Identities=28% Similarity=0.376 Sum_probs=169.5
Q ss_pred eEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCCh------hcccceEEEEccCCCCCC
Q 001400 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ------ETFARISGYCEQNDIHSP 915 (1085)
Q Consensus 842 ~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~------~~~~~~~gy~~Q~~~~~~ 915 (1085)
..+|+|+||+|++|++++|+|+||||||||+++|+|..+ +.+|+|.++|.++.. ...++.++|++|++.+++
T Consensus 14 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 91 (241)
T cd03256 14 KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVE--PTSGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLIE 91 (241)
T ss_pred cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCCceEEECCEeccccCHhHHHHHHhccEEEcccCcccc
Confidence 579999999999999999999999999999999999865 468999999987542 234567999999998888
Q ss_pred CCCHHHHHHHhhhhc-----CCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEE
Q 001400 916 GLTVLESLLFSAWLR-----LPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIV 990 (1085)
Q Consensus 916 ~~tv~e~l~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~il 990 (1085)
.+||+||+.+..... ...........+.+.++++.+++.+..+.. +.+||+|||||++|||||+.+|+||
T Consensus 92 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~la~al~~~p~ll 166 (241)
T cd03256 92 RLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQR-----ADQLSGGQQQRVAIARALMQQPKLI 166 (241)
T ss_pred cCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCC-----cccCCHHHHHHHHHHHHHhcCCCEE
Confidence 899999998753210 000111123345677889999987665543 3579999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHC-CceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCC
Q 001400 991 FMDEPTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1085)
Q Consensus 991 llDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~ 1055 (1085)
||||||+|||+.++..+++.|++++++ |+|||++||+++ ++...+|++++|++ |++++.|+..
T Consensus 167 llDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~-~~~~~~d~v~~l~~-G~i~~~~~~~ 230 (241)
T cd03256 167 LADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVD-LAREYADRIVGLKD-GRIVFDGPPA 230 (241)
T ss_pred EEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEeecCHH
Confidence 999999999999999999999998764 899999999987 47778999999985 7888888753
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-37 Score=333.63 Aligned_cols=192 Identities=31% Similarity=0.449 Sum_probs=163.1
Q ss_pred eEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCChh------c-ccceEEEEccCCCCC
Q 001400 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE------T-FARISGYCEQNDIHS 914 (1085)
Q Consensus 842 ~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~------~-~~~~~gy~~Q~~~~~ 914 (1085)
..+|+|+||+|++|++++|+||||||||||+++|+|..+ +.+|+|.++|.++... . .++.++|++|++.++
T Consensus 17 ~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 94 (218)
T cd03255 17 VQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDR--PTSGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLL 94 (218)
T ss_pred eeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcC--CCceeEEECCEehhhcchhHHHHHHhhcEEEEeeccccC
Confidence 579999999999999999999999999999999999876 4689999999875421 1 245799999999999
Q ss_pred CCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Q 001400 915 PGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDE 994 (1085)
Q Consensus 915 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDE 994 (1085)
+.+|++||+.+....+. .......+.++++++.+++.+..+... ..||+|||||++|||||+.+|+||||||
T Consensus 95 ~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~lllLDE 166 (218)
T cd03255 95 PDLTALENVELPLLLAG---VPKKERRERAEELLERVGLGDRLNHYP-----SELSGGQQQRVAIARALANDPKIILADE 166 (218)
T ss_pred CCCcHHHHHHHHHhhcC---CCHHHHHHHHHHHHHHcCCchhhhcCh-----hhcCHHHHHHHHHHHHHccCCCEEEEcC
Confidence 99999999988654332 122233456788999999977665543 5799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHH-CCceEEEEecCccHHHHHhcCEEEEEecC
Q 001400 995 PTSGLDARAAAIVMRTVRNIVN-TGRTIVCTIHQPSIDIFESFDELLFMKRG 1045 (1085)
Q Consensus 995 PtsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~il~l~~g 1045 (1085)
||+|||+.++..+.+.|+++.+ .|+|||++||+++. + +.||++++|++|
T Consensus 167 P~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~-~-~~~d~v~~l~~G 216 (218)
T cd03255 167 PTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPEL-A-EYADRIIELRDG 216 (218)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHH-H-hhhcEEEEeeCC
Confidence 9999999999999999999976 58999999999863 4 489999999864
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-37 Score=336.10 Aligned_cols=206 Identities=25% Similarity=0.353 Sum_probs=172.4
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCC------CCceEEEEccCCCCC
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV------PPRTSAYVSQQDWQV 221 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~------~~~~~~yv~Q~d~~~ 221 (1085)
+.+|+|+|++|++|++++|+|||||||||||++|+|.++|. +|+|.++|.++.... .++.++||+|++.++
T Consensus 13 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~ 89 (235)
T cd03261 13 RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPD---SGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALF 89 (235)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccChhhHHHHhcceEEEccCcccC
Confidence 46999999999999999999999999999999999998876 999999998875432 245799999999889
Q ss_pred CCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccC
Q 001400 222 AEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGD 301 (1085)
Q Consensus 222 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 301 (1085)
+.+||+||+.++......... ......++++++.+||.+..++.+
T Consensus 90 ~~~tv~~~l~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-- 134 (235)
T cd03261 90 DSLTVFENVAFPLREHTRLSE---------------------------------EEIREIVLEKLEAVGLRGAEDLYP-- 134 (235)
T ss_pred CCCcHHHHHHHHHhhccCCCH---------------------------------HHHHHHHHHHHHHcCCchhhcCCh--
Confidence 999999999886432100000 001123677899999987666655
Q ss_pred cccccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEe
Q 001400 302 EMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILL 381 (1085)
Q Consensus 302 ~~~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L 381 (1085)
..|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++++.. +++|+.++|+.+++..++|+|++|
T Consensus 135 ---~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~-~~tvi~vsH~~~~~~~~~d~v~~l 210 (235)
T cd03261 135 ---AELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKEL-GLTSIMVTHDLDTAFAIADRIAVL 210 (235)
T ss_pred ---hhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhc-CcEEEEEecCHHHHHHhcCEEEEE
Confidence 4699999999999999999999999999999999999999999999987533 455666889999999999999999
Q ss_pred cCCeEEEecChhhH
Q 001400 382 SEGQIVYQGPRVSV 395 (1085)
Q Consensus 382 ~~G~iv~~G~~~~~ 395 (1085)
++|++++.|+.+++
T Consensus 211 ~~G~i~~~g~~~~~ 224 (235)
T cd03261 211 YDGKIVAEGTPEEL 224 (235)
T ss_pred ECCeEEEecCHHHH
Confidence 99999999988765
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-37 Score=335.46 Aligned_cols=200 Identities=27% Similarity=0.348 Sum_probs=170.3
Q ss_pred EEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCChh------cccceEEEEccCCCCCCC
Q 001400 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE------TFARISGYCEQNDIHSPG 916 (1085)
Q Consensus 843 ~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~------~~~~~~gy~~Q~~~~~~~ 916 (1085)
.+|+|+||+|++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.++... ..++.++|++|++.+++.
T Consensus 19 ~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 96 (233)
T cd03258 19 TALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLER--PTSGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSS 96 (233)
T ss_pred eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcccCCHHHHHHHHhheEEEccCcccCCC
Confidence 79999999999999999999999999999999999876 4689999999876421 235679999999999999
Q ss_pred CCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Q 001400 917 LTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPT 996 (1085)
Q Consensus 917 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEPt 996 (1085)
+|++||+.+....+. .......+.++++++.+++.+..+... ..||+|||||++|||||+.+|++|+|||||
T Consensus 97 ~t~~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~lllLDEP~ 168 (233)
T cd03258 97 RTVFENVALPLEIAG---VPKAEIEERVLELLELVGLEDKADAYP-----AQLSGGQKQRVGIARALANNPKVLLCDEAT 168 (233)
T ss_pred CcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHCCChhhhhcCh-----hhCCHHHHHHHHHHHHHhcCCCEEEecCCC
Confidence 999999987643321 122333456788999999977665543 579999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHC-CceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCC
Q 001400 997 SGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1085)
Q Consensus 997 sgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~ 1054 (1085)
+|||+.++..+.+.|+++.++ |+|||++||+++ .+.+.+|++++|++ |++++.|+.
T Consensus 169 ~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 225 (233)
T cd03258 169 SALDPETTQSILALLRDINRELGLTIVLITHEME-VVKRICDRVAVMEK-GEVVEEGTV 225 (233)
T ss_pred CcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEecCH
Confidence 999999999999999998765 899999999986 46778999999985 788888764
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-37 Score=355.53 Aligned_cols=206 Identities=21% Similarity=0.301 Sum_probs=178.0
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCC-CceEEEEccCCCCCCCCCH
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP-PRTSAYVSQQDWQVAEMTV 226 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 226 (1085)
..+|+|+|+.+++|++++|+|||||||||||++|+|+.+++ +|+|.++|.++....+ +|.++||+|++.+||++||
T Consensus 32 ~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~---~G~I~i~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv 108 (377)
T PRK11607 32 QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPT---AGQIMLDGVDLSHVPPYQRPINMMFQSYALFPHMTV 108 (377)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHHHCCEEEEeCCCccCCCCCH
Confidence 35899999999999999999999999999999999999876 9999999998765433 5789999999999999999
Q ss_pred HHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCccccc
Q 001400 227 RETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKG 306 (1085)
Q Consensus 227 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 306 (1085)
.||+.|+.+..+... .+...+++++++.+||.+..+..+ .+
T Consensus 109 ~eNi~~~l~~~~~~~----------------------------------~~~~~~v~~~l~~l~L~~~~~~~~-----~~ 149 (377)
T PRK11607 109 EQNIAFGLKQDKLPK----------------------------------AEIASRVNEMLGLVHMQEFAKRKP-----HQ 149 (377)
T ss_pred HHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhcCCh-----hh
Confidence 999999765322100 001234788999999987766554 57
Q ss_pred CchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEecCCeE
Q 001400 307 ISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQI 386 (1085)
Q Consensus 307 LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~~G~i 386 (1085)
|||||||||+|||||+.+|++|+|||||++||..++.++.+.|+++.+..+ .+++.++|+..++..++|+|++|++|++
T Consensus 150 LSgGq~QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g-~tii~vTHd~~ea~~laDri~vl~~G~i 228 (377)
T PRK11607 150 LSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVG-VTCVMVTHDQEEAMTMAGRIAIMNRGKF 228 (377)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC-CEEEEEcCCHHHHHHhCCEEEEEeCCEE
Confidence 999999999999999999999999999999999999999999998876554 5566688999999999999999999999
Q ss_pred EEecChhhHH
Q 001400 387 VYQGPRVSVL 396 (1085)
Q Consensus 387 v~~G~~~~~~ 396 (1085)
+..|+++++.
T Consensus 229 ~~~g~~~~~~ 238 (377)
T PRK11607 229 VQIGEPEEIY 238 (377)
T ss_pred EEEcCHHHHH
Confidence 9999998874
|
|
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-37 Score=349.60 Aligned_cols=206 Identities=27% Similarity=0.387 Sum_probs=176.6
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCC--CCceEEEEccCCCCCCCCC
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV--PPRTSAYVSQQDWQVAEMT 225 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~lT 225 (1085)
+.+|+|+|+.|++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+|
T Consensus 6 ~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~t 82 (302)
T TIGR01188 6 FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPT---SGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLT 82 (302)
T ss_pred eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCc
Confidence 46999999999999999999999999999999999999876 999999998875321 2457999999999999999
Q ss_pred HHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCcccc
Q 001400 226 VRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLK 305 (1085)
Q Consensus 226 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 305 (1085)
|+||+.|.++..+... .....+++++++.+||++..++.++
T Consensus 83 v~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~----- 123 (302)
T TIGR01188 83 GRENLEMMGRLYGLPK----------------------------------DEAEERAEELLELFELGEAADRPVG----- 123 (302)
T ss_pred HHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCChhHhCCchh-----
Confidence 9999998655432110 0011247789999999987777654
Q ss_pred cCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEecCCe
Q 001400 306 GISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQ 385 (1085)
Q Consensus 306 ~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~~G~ 385 (1085)
.|||||||||+||+||+.+|++|+|||||+|||+.++..+++.|+++++. +++|+.++|..+++.++||+|++|++|+
T Consensus 124 ~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~--g~tvi~~sH~~~~~~~~~d~v~~l~~G~ 201 (302)
T TIGR01188 124 TYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEE--GVTILLTTHYMEEADKLCDRIAIIDHGR 201 (302)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhC--CCEEEEECCCHHHHHHhCCEEEEEECCE
Confidence 69999999999999999999999999999999999999999999998753 4566668899999999999999999999
Q ss_pred EEEecChhhHHH
Q 001400 386 IVYQGPRVSVLD 397 (1085)
Q Consensus 386 iv~~G~~~~~~~ 397 (1085)
+++.|+.+++.+
T Consensus 202 i~~~g~~~~l~~ 213 (302)
T TIGR01188 202 IIAEGTPEELKR 213 (302)
T ss_pred EEEECCHHHHHH
Confidence 999999888754
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-37 Score=350.98 Aligned_cols=206 Identities=24% Similarity=0.368 Sum_probs=175.9
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCC------CceEEEEccCCCCC
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP------PRTSAYVSQQDWQV 221 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~------~~~~~yv~Q~d~~~ 221 (1085)
+++|+|+|+.|++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++||+|++.++
T Consensus 18 ~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~~~l~ 94 (343)
T PRK11153 18 IHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPT---SGRVLVDGQDLTALSEKELRKARRQIGMIFQHFNLL 94 (343)
T ss_pred eEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCcCCHHHHHHHhcCEEEEeCCCccC
Confidence 56999999999999999999999999999999999999876 9999999998765321 46799999999989
Q ss_pred CCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccC
Q 001400 222 AEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGD 301 (1085)
Q Consensus 222 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 301 (1085)
+.+||+||+.|.....+... .+...+++++++.+||++..++.+
T Consensus 95 ~~~tv~eni~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gL~~~~~~~~-- 138 (343)
T PRK11153 95 SSRTVFDNVALPLELAGTPK----------------------------------AEIKARVTELLELVGLSDKADRYP-- 138 (343)
T ss_pred CCCcHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhhCCh--
Confidence 99999999998654322100 001124778899999988777654
Q ss_pred cccccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEe
Q 001400 302 EMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILL 381 (1085)
Q Consensus 302 ~~~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L 381 (1085)
+.|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++++.. +++|+.++|+.+++.++||+|++|
T Consensus 139 ---~~LSgGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~-g~tiilvtH~~~~i~~~~d~v~~l 214 (343)
T PRK11153 139 ---AQLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINREL-GLTIVLITHEMDVVKRICDRVAVI 214 (343)
T ss_pred ---hhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEE
Confidence 4699999999999999999999999999999999999999999999987643 455666889999999999999999
Q ss_pred cCCeEEEecChhhHH
Q 001400 382 SEGQIVYQGPRVSVL 396 (1085)
Q Consensus 382 ~~G~iv~~G~~~~~~ 396 (1085)
++|++++.|+.+++.
T Consensus 215 ~~G~i~~~g~~~~~~ 229 (343)
T PRK11153 215 DAGRLVEQGTVSEVF 229 (343)
T ss_pred ECCEEEEEcCHHHHH
Confidence 999999999988774
|
|
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-37 Score=316.75 Aligned_cols=206 Identities=26% Similarity=0.384 Sum_probs=171.8
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCC----CceEEEEccCCCCCCC
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP----PRTSAYVSQQDWQVAE 223 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 223 (1085)
.++|+|||+.+++||+++|+||||+||||||++|+|..++. +|+|.++|.+++...+ ++-++||||....|+.
T Consensus 16 ~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~---~G~I~~~G~dit~~p~~~r~r~Gi~~VPegR~iF~~ 92 (237)
T COG0410 16 IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPR---SGRIIFDGEDITGLPPHERARLGIAYVPEGRRIFPR 92 (237)
T ss_pred eeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeeEEECCeecCCCCHHHHHhCCeEeCcccccchhh
Confidence 68999999999999999999999999999999999998875 9999999999987755 3678999999999999
Q ss_pred CCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhC-CcccccccccCc
Q 001400 224 MTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILG-LDTCADTLVGDE 302 (1085)
Q Consensus 224 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lg-L~~~~dt~vg~~ 302 (1085)
|||+|||..++........ . ...+|.+.+.|= |..-.+..-|
T Consensus 93 LTVeENL~~g~~~~~~~~~-----------------~------------------~~~~e~v~~lFP~Lker~~~~aG-- 135 (237)
T COG0410 93 LTVEENLLLGAYARRDKEA-----------------Q------------------ERDLEEVYELFPRLKERRNQRAG-- 135 (237)
T ss_pred CcHHHHHhhhhhccccccc-----------------c------------------cccHHHHHHHChhHHHHhcCccc--
Confidence 9999999987543211000 0 000233333332 3333444433
Q ss_pred ccccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEec
Q 001400 303 MLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLS 382 (1085)
Q Consensus 303 ~~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~ 382 (1085)
+|||||+|-++|||||+++|++|+|||||.||-|.-..+|++.++++.+.. +.+|+.+.|+...+.+++||.++|.
T Consensus 136 ---~LSGGEQQMLAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~-g~tIlLVEQn~~~Al~iaDr~yvle 211 (237)
T COG0410 136 ---TLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEG-GMTILLVEQNARFALEIADRGYVLE 211 (237)
T ss_pred ---CCChHHHHHHHHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcC-CcEEEEEeccHHHHHHhhCEEEEEe
Confidence 599999999999999999999999999999999999999999999998653 4677789999999999999999999
Q ss_pred CCeEEEecChhhHHH
Q 001400 383 EGQIVYQGPRVSVLD 397 (1085)
Q Consensus 383 ~G~iv~~G~~~~~~~ 397 (1085)
+|++++.|+.+++.+
T Consensus 212 ~Griv~~G~~~eL~~ 226 (237)
T COG0410 212 NGRIVLSGTAAELLA 226 (237)
T ss_pred CCEEEEecCHHHHhc
Confidence 999999999988853
|
|
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-37 Score=343.26 Aligned_cols=202 Identities=24% Similarity=0.342 Sum_probs=169.7
Q ss_pred eEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCCh-----hcccceEEEEccCCC-CCC
Q 001400 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ-----ETFARISGYCEQNDI-HSP 915 (1085)
Q Consensus 842 ~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~-----~~~~~~~gy~~Q~~~-~~~ 915 (1085)
..+|+||||+|++||++||+|+||||||||+++|+|..+ +.+|+|.++|.++.. ..+++.+||++|++. .+.
T Consensus 20 ~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~ 97 (287)
T PRK13637 20 KKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLK--PTSGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLF 97 (287)
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCccEEEECCEECCCcCccHHHHhhceEEEecCchhccc
Confidence 469999999999999999999999999999999999876 568999999988643 245678999999874 334
Q ss_pred CCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCC--cccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q 001400 916 GLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELT--SLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMD 993 (1085)
Q Consensus 916 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlD 993 (1085)
..||+||+.|+.... .....+..+.++++++.+++. +..+.. +..||||||||++|||||+.+|++||||
T Consensus 98 ~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~-----~~~LSgGq~qrv~iAraL~~~P~llllD 169 (287)
T PRK13637 98 EETIEKDIAFGPINL---GLSEEEIENRVKRAMNIVGLDYEDYKDKS-----PFELSGGQKRRVAIAGVVAMEPKILILD 169 (287)
T ss_pred cccHHHHHHhHHHHC---CCCHHHHHHHHHHHHHHcCCCchhhccCC-----cccCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 579999999865332 223344456688999999996 444443 3579999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHC-CceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCC
Q 001400 994 EPTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1085)
Q Consensus 994 EPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~ 1055 (1085)
|||+|||+.++..+++.|++++++ |.|||++||+++ ++.+.||++++|++ |++++.|+..
T Consensus 170 EPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~drv~~l~~-G~i~~~g~~~ 230 (287)
T PRK13637 170 EPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSME-DVAKLADRIIVMNK-GKCELQGTPR 230 (287)
T ss_pred CCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEECCHH
Confidence 999999999999999999999765 899999999986 46678999999985 7888888754
|
|
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-37 Score=336.78 Aligned_cols=203 Identities=26% Similarity=0.343 Sum_probs=170.8
Q ss_pred cCCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCChhcccceEEEEccCCCCCCCCC
Q 001400 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLT 918 (1085)
Q Consensus 839 ~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gy~~Q~~~~~~~~t 918 (1085)
+++..+|+|+||+|++|++++|+|+||||||||+++|+|... +.+|+|.++|.+... ..+.+||++|++.+++..|
T Consensus 11 ~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~--~~~~~~~v~q~~~~~~~~t 86 (255)
T PRK11248 11 YGGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVP--YQHGSITLDGKPVEG--PGAERGVVFQNEGLLPWRN 86 (255)
T ss_pred eCCeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECCC--CCCcEEEEeCCCccCCCCc
Confidence 345679999999999999999999999999999999999865 468999999987643 2345899999998888899
Q ss_pred HHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCC
Q 001400 919 VLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSG 998 (1085)
Q Consensus 919 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEPtsg 998 (1085)
++||+.+....+. .......+.++++++.+++.+..+.. +..||||||||++|||||+.+|++|||||||+|
T Consensus 87 v~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LSgGq~qrl~laral~~~p~lllLDEPt~~ 158 (255)
T PRK11248 87 VQDNVAFGLQLAG---VEKMQRLEIAHQMLKKVGLEGAEKRY-----IWQLSGGQRQRVGIARALAANPQLLLLDEPFGA 158 (255)
T ss_pred HHHHHHhHHHHcC---CCHHHHHHHHHHHHHHcCChhHhhCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcc
Confidence 9999987643221 22233345678899999997665543 357999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHH-CCceEEEEecCccHHHHHhcCEEEEEec-CcEEEEecCC
Q 001400 999 LDARAAAIVMRTVRNIVN-TGRTIVCTIHQPSIDIFESFDELLFMKR-GGELIYAGPL 1054 (1085)
Q Consensus 999 LD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~il~l~~-gG~~~~~g~~ 1054 (1085)
||+.++..+.+.|+++++ .|+|||++||+++ .+...||++++|++ +|+++..++.
T Consensus 159 LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~-~~~~~~d~i~~l~~~~G~i~~~~~~ 215 (255)
T PRK11248 159 LDAFTREQMQTLLLKLWQETGKQVLLITHDIE-EAVFMATELVLLSPGPGRVVERLPL 215 (255)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCCcEEEEEecC
Confidence 999999999999999854 5899999999987 47788999999985 5899888754
|
|
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-37 Score=330.78 Aligned_cols=194 Identities=26% Similarity=0.342 Sum_probs=164.4
Q ss_pred CeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCCh------hcccceEEEEccCCCCC
Q 001400 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ------ETFARISGYCEQNDIHS 914 (1085)
Q Consensus 841 ~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~------~~~~~~~gy~~Q~~~~~ 914 (1085)
+..+|+|+||+|++|++++|+|+||||||||+++|+|..+ +.+|+|.++|.++.. ..+++.++|++|++.++
T Consensus 14 ~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 91 (214)
T TIGR02673 14 GVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALT--PSRGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLL 91 (214)
T ss_pred CceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcccCCHHHHHHHHhheEEEecChhhc
Confidence 3569999999999999999999999999999999999865 468999999987642 12456799999999888
Q ss_pred CCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Q 001400 915 PGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDE 994 (1085)
Q Consensus 915 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDE 994 (1085)
+..|+.||+.+....+. .......+.++++++.+++.+..+..+ ..||+|||||++|||||+.+|++|||||
T Consensus 92 ~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~la~al~~~p~lllLDE 163 (214)
T TIGR02673 92 PDRTVYENVALPLEVRG---KKEREIQRRVGAALRQVGLEHKADAFP-----EQLSGGEQQRVAIARAIVNSPPLLLADE 163 (214)
T ss_pred cCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCCHHHHHHHHHHHHHhCCCCEEEEeC
Confidence 89999999988643321 122333456788999999876555433 5799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEecC
Q 001400 995 PTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 1045 (1085)
Q Consensus 995 PtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~g 1045 (1085)
||+|||+.++..+.+.|+++.++|+|||++||+++ ++...||++++|++|
T Consensus 164 Pt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~i~~l~~G 213 (214)
T TIGR02673 164 PTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLS-LVDRVAHRVIILDDG 213 (214)
T ss_pred CcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEecCC
Confidence 99999999999999999998777999999999986 477789999999864
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-37 Score=334.89 Aligned_cols=205 Identities=25% Similarity=0.373 Sum_probs=172.6
Q ss_pred CCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCCh-----hcccceEEEEccCCCCC
Q 001400 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ-----ETFARISGYCEQNDIHS 914 (1085)
Q Consensus 840 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~-----~~~~~~~gy~~Q~~~~~ 914 (1085)
++..+|+|+||++++||++||+|+||||||||+++|+|... +.+|+|.++|.++.. ...++.++|++|++.++
T Consensus 12 ~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 89 (240)
T PRK09493 12 GPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEE--ITSGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLF 89 (240)
T ss_pred CCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECCcCChhHHHHhhceEEEecccccC
Confidence 44679999999999999999999999999999999999865 568999999987642 23456799999999888
Q ss_pred CCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Q 001400 915 PGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDE 994 (1085)
Q Consensus 915 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDE 994 (1085)
+.+||+||+.+...... ........+.+.++++.+++.+..+... ..||+|||||++|||||+.+|++|+|||
T Consensus 90 ~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~llllDE 162 (240)
T PRK09493 90 PHLTALENVMFGPLRVR--GASKEEAEKQARELLAKVGLAERAHHYP-----SELSGGQQQRVAIARALAVKPKLMLFDE 162 (240)
T ss_pred CCCcHHHHHHhHHHHhc--CCCHHHHHHHHHHHHHHcCChHHHhcCh-----hhcCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 89999999987532111 1222334456788999999876655543 5799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCC
Q 001400 995 PTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1085)
Q Consensus 995 PtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~ 1055 (1085)
||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.||++++|++ |++++.|+..
T Consensus 163 P~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~g~~~ 221 (240)
T PRK09493 163 PTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIG-FAEKVASRLIFIDK-GRIAEDGDPQ 221 (240)
T ss_pred CcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEeeCCHH
Confidence 99999999999999999998777999999999986 46678999999985 7899888754
|
|
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-37 Score=331.55 Aligned_cols=200 Identities=28% Similarity=0.400 Sum_probs=167.6
Q ss_pred eEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCChh------cc-cceEEEEccCCCCC
Q 001400 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE------TF-ARISGYCEQNDIHS 914 (1085)
Q Consensus 842 ~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~------~~-~~~~gy~~Q~~~~~ 914 (1085)
..+|+|+||+|++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.++... .+ ++.++|++|++.++
T Consensus 22 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~~~ 99 (233)
T PRK11629 22 TDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDT--PTSGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHLL 99 (233)
T ss_pred eeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEcCcCCHHHHHHHHhccEEEEecCcccC
Confidence 469999999999999999999999999999999999866 5689999999876431 12 25699999999888
Q ss_pred CCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Q 001400 915 PGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDE 994 (1085)
Q Consensus 915 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDE 994 (1085)
+.+|++||+.+....+. ......++.++++++.+++.+..+... .+||||||||++|||||+.+|+||||||
T Consensus 100 ~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgG~~qrl~la~al~~~p~lllLDE 171 (233)
T PRK11629 100 PDFTALENVAMPLLIGK---KKPAEINSRALEMLAAVGLEHRANHRP-----SELSGGERQRVAIARALVNNPRLVLADE 171 (233)
T ss_pred CCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 89999999988643221 122334456788999999977655543 5799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHH-CCceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCC
Q 001400 995 PTSGLDARAAAIVMRTVRNIVN-TGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1085)
Q Consensus 995 PtsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~ 1054 (1085)
||+|||+.++..+.+.|+++++ .|.|||++||+++. + +.+|++++|++ |+++..+++
T Consensus 172 Pt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~-~-~~~~~~~~l~~-G~i~~~~~~ 229 (233)
T PRK11629 172 PTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQL-A-KRMSRQLEMRD-GRLTAELSL 229 (233)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-H-HhhCEEEEEEC-CEEEEEecc
Confidence 9999999999999999999875 58999999999863 4 45689999974 789888875
|
|
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-37 Score=339.50 Aligned_cols=211 Identities=23% Similarity=0.271 Sum_probs=176.1
Q ss_pred cccccccCCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCCh---hc----ccceEE
Q 001400 833 KQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ET----FARISG 905 (1085)
Q Consensus 833 ~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~---~~----~~~~~g 905 (1085)
++..+.+++..+|+|+||+|++|++++|+|+||||||||+++|+|..+ +.+|+|.++|.++.. .. .++.+|
T Consensus 28 ~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~--p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~ 105 (269)
T cd03294 28 EEILKKTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIE--PTSGKVLIDGQDIAAMSRKELRELRRKKIS 105 (269)
T ss_pred hhhhhhcCCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEccccChhhhhhhhcCcEE
Confidence 345556677889999999999999999999999999999999999876 468999999987542 11 235799
Q ss_pred EEccCCCCCCCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhc
Q 001400 906 YCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVA 985 (1085)
Q Consensus 906 y~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~ 985 (1085)
|++|++.+++.+|++||+.+...... .......+.++++++.+++.+..+..+ .+||+|||||++|||||+.
T Consensus 106 ~v~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~Gq~qrv~lAral~~ 177 (269)
T cd03294 106 MVFQSFALLPHRTVLENVAFGLEVQG---VPRAEREERAAEALELVGLEGWEHKYP-----DELSGGMQQRVGLARALAV 177 (269)
T ss_pred EEecCcccCCCCcHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCHhHhhCCc-----ccCCHHHHHHHHHHHHHhc
Confidence 99999998889999999987643221 122333456788999999977666543 4799999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCC
Q 001400 986 NPSIVFMDEPTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1085)
Q Consensus 986 ~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~ 1055 (1085)
+|+||||||||+|||+.++..+.+.|+++.++ |+|||++||+++ ++.+.+|++++|++ |++++.|+..
T Consensus 178 ~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~-~~~~~~d~v~~l~~-G~i~~~g~~~ 246 (269)
T cd03294 178 DPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLD-EALRLGDRIAIMKD-GRLVQVGTPE 246 (269)
T ss_pred CCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEEC-CEEEEeCCHH
Confidence 99999999999999999999999999998754 899999999986 46788999999985 7888888754
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-37 Score=337.35 Aligned_cols=206 Identities=27% Similarity=0.338 Sum_probs=169.7
Q ss_pred CeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCCh------hcccceEEEEccCCCCC
Q 001400 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ------ETFARISGYCEQNDIHS 914 (1085)
Q Consensus 841 ~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~------~~~~~~~gy~~Q~~~~~ 914 (1085)
+..+|+|+||+|++|++++|+||||||||||+++|+|..+ +.+|+|.++|.++.. ..+++.+||++|++.++
T Consensus 14 ~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~ 91 (243)
T TIGR02315 14 GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVE--PSSGSILLEGTDITKLRGKKLRKLRRRIGMIFQHYNLI 91 (243)
T ss_pred CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCccEEEECCEEhhhCCHHHHHHHHhheEEEcCCCccc
Confidence 4569999999999999999999999999999999999876 468999999987542 12456799999999888
Q ss_pred CCCCHHHHHHHhhhhcC-----CCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCE
Q 001400 915 PGLTVLESLLFSAWLRL-----PSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSI 989 (1085)
Q Consensus 915 ~~~tv~e~l~~~~~~~~-----~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~i 989 (1085)
+.+|++||+.+...... ..........+.+.++++.+++.+..+.. +..||||||||++|||||+.+|++
T Consensus 92 ~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qrv~la~al~~~p~l 166 (243)
T TIGR02315 92 ERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQR-----ADQLSGGQQQRVAIARALAQQPDL 166 (243)
T ss_pred ccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCC-----cccCCHHHHHHHHHHHHHhcCCCE
Confidence 89999999976431100 00011123345678889999987665543 357999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHC-CceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCC
Q 001400 990 VFMDEPTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1085)
Q Consensus 990 lllDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~ 1055 (1085)
|+|||||+|||+.++..+.+.|+++.++ |+|||++||+++ .+.+.||++++|++ |++++.|+..
T Consensus 167 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~-~~~~~~d~v~~l~~-G~i~~~~~~~ 231 (243)
T TIGR02315 167 ILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVD-LAKKYADRIVGLKA-GEIVFDGAPS 231 (243)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEEC-CEEEecCCHH
Confidence 9999999999999999999999998764 899999999986 46678999999985 7888888754
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-37 Score=353.90 Aligned_cols=206 Identities=25% Similarity=0.388 Sum_probs=176.5
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCC-CceEEEEccCCCCCCCCCH
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP-PRTSAYVSQQDWQVAEMTV 226 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 226 (1085)
+.+|+|+|++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++....+ ++.++||+|++.+++.+||
T Consensus 16 ~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~---~G~I~~~g~~i~~~~~~~~~i~~v~Q~~~l~~~~tv 92 (369)
T PRK11000 16 VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDIT---SGDLFIGEKRMNDVPPAERGVGMVFQSYALYPHLSV 92 (369)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHhHCCEEEEeCCcccCCCCCH
Confidence 36999999999999999999999999999999999998876 9999999998765432 4679999999999999999
Q ss_pred HHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCccccc
Q 001400 227 RETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKG 306 (1085)
Q Consensus 227 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 306 (1085)
+||+.|+.+..+... .+...+++++++.+||++..++.+ ..
T Consensus 93 ~eni~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~lgL~~~~~~~~-----~~ 133 (369)
T PRK11000 93 AENMSFGLKLAGAKK----------------------------------EEINQRVNQVAEVLQLAHLLDRKP-----KA 133 (369)
T ss_pred HHHHHhHHhhcCCCH----------------------------------HHHHHHHHHHHHHcCChhhhcCCh-----hh
Confidence 999998754322100 001224788899999988777655 46
Q ss_pred CchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEecCCeE
Q 001400 307 ISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQI 386 (1085)
Q Consensus 307 LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~~G~i 386 (1085)
|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.+.. +++++.++|+..++..++|+|++|++|++
T Consensus 134 LSgGq~QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~-g~tvI~vTHd~~~~~~~~d~i~vl~~G~i 212 (369)
T PRK11000 134 LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRL-GRTMIYVTHDQVEAMTLADKIVVLDAGRV 212 (369)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHh-CCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 99999999999999999999999999999999999999999999987643 44566688999999999999999999999
Q ss_pred EEecChhhHH
Q 001400 387 VYQGPRVSVL 396 (1085)
Q Consensus 387 v~~G~~~~~~ 396 (1085)
+..|+++++.
T Consensus 213 ~~~g~~~~i~ 222 (369)
T PRK11000 213 AQVGKPLELY 222 (369)
T ss_pred EEEcCHHHHH
Confidence 9999988774
|
|
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-37 Score=330.58 Aligned_cols=200 Identities=30% Similarity=0.448 Sum_probs=169.3
Q ss_pred eEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCCh--hcccceEEEEccCCCCCCCCCH
Q 001400 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ--ETFARISGYCEQNDIHSPGLTV 919 (1085)
Q Consensus 842 ~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~--~~~~~~~gy~~Q~~~~~~~~tv 919 (1085)
..+|+||||++++||++||+||||||||||+++|+|..+ +.+|+|.++|.++.. ..+++.+||++|++.+++..|+
T Consensus 15 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv 92 (220)
T cd03263 15 KPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELR--PTSGTAYINGYSIRTDRKAARQSLGYCPQFDALFDELTV 92 (220)
T ss_pred ceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEecccchHHHhhhEEEecCcCCccccCCH
Confidence 579999999999999999999999999999999999866 468999999987642 2345679999999988889999
Q ss_pred HHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCC
Q 001400 920 LESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGL 999 (1085)
Q Consensus 920 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEPtsgL 999 (1085)
+||+.+....+. .......+.++++++.+++.+..+... ..||+|||||++|||||+.+|++|+|||||+||
T Consensus 93 ~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~llllDEP~~~L 164 (220)
T cd03263 93 REHLRFYARLKG---LPKSEIKEEVELLLRVLGLTDKANKRA-----RTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGL 164 (220)
T ss_pred HHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCHHHHhChh-----hhCCHHHHHHHHHHHHHhcCCCEEEECCCCCCC
Confidence 999987654331 122233455788999999876655543 579999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCC
Q 001400 1000 DARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1085)
Q Consensus 1000 D~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~ 1054 (1085)
|+.++..+.+.|+++++ ++|||++||+++ .+.+.+|++++|++ |++++.|+.
T Consensus 165 D~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~~-g~i~~~~~~ 216 (220)
T cd03263 165 DPASRRAIWDLILEVRK-GRSIILTTHSMD-EAEALCDRIAIMSD-GKLRCIGSP 216 (220)
T ss_pred CHHHHHHHHHHHHHHhc-CCEEEEEcCCHH-HHHHhcCEEEEEEC-CEEEecCCH
Confidence 99999999999999865 699999999986 46678999999985 688888764
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-37 Score=336.39 Aligned_cols=206 Identities=27% Similarity=0.366 Sum_probs=171.8
Q ss_pred cCCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCCh-----------hcccceEEEE
Q 001400 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ-----------ETFARISGYC 907 (1085)
Q Consensus 839 ~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~-----------~~~~~~~gy~ 907 (1085)
+++..+|+|+||+|++|++++|+|+||||||||+++|+|..+ +.+|+|.++|.++.. ...++.++|+
T Consensus 13 ~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v 90 (250)
T PRK11264 13 FHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQ--PEAGTIRVGDITIDTARSLSQQKGLIRQLRQHVGFV 90 (250)
T ss_pred ECCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEccccccccchhhHHHHhhhhEEEE
Confidence 344579999999999999999999999999999999999866 468999999987532 2345679999
Q ss_pred ccCCCCCCCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCC
Q 001400 908 EQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANP 987 (1085)
Q Consensus 908 ~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p 987 (1085)
+|++.+++..|++||+.+...... ........+.++++++.+++.+..+.. +..||+|||||++|||||+.+|
T Consensus 91 ~q~~~~~~~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LS~Gq~qrv~la~al~~~p 163 (250)
T PRK11264 91 FQNFNLFPHRTVLENIIEGPVIVK--GEPKEEATARARELLAKVGLAGKETSY-----PRRLSGGQQQRVAIARALAMRP 163 (250)
T ss_pred ecCcccCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCcchhhCC-----hhhCChHHHHHHHHHHHHhcCC
Confidence 999988889999999987532111 112233445678889999987665543 3579999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCC
Q 001400 988 SIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1085)
Q Consensus 988 ~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~ 1055 (1085)
++|||||||+|||+.++..+++.|+++.++|.|||++||+++ ++.+.+|++++|++ |++++.|+..
T Consensus 164 ~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~ 229 (250)
T PRK11264 164 EVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMS-FARDVADRAIFMDQ-GRIVEQGPAK 229 (250)
T ss_pred CEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEEC-CEEEEeCCHH
Confidence 999999999999999999999999999877999999999986 46778999999985 7888888753
|
|
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-37 Score=331.12 Aligned_cols=202 Identities=28% Similarity=0.409 Sum_probs=167.0
Q ss_pred cCCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCChh---c-ccceEEEEccCCCCC
Q 001400 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE---T-FARISGYCEQNDIHS 914 (1085)
Q Consensus 839 ~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~---~-~~~~~gy~~Q~~~~~ 914 (1085)
+++..+|+|+||++++||++||+||||||||||+++|+|..+ +.+|+|.++|.+.... . .++.++|++|++.++
T Consensus 10 ~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~ 87 (222)
T cd03224 10 YGKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLP--PRSGSIRFDGRDITGLPPHERARAGIGYVPEGRRIF 87 (222)
T ss_pred cCCeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcCCCCHHHHHhcCeEEeccccccC
Confidence 345679999999999999999999999999999999999876 4689999999875421 1 245699999999999
Q ss_pred CCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHc-CCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q 001400 915 PGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELV-ELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMD 993 (1085)
Q Consensus 915 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlD 993 (1085)
+.+|++||+.+....+. .......+.++++.+ ++.+..+.. +..||+|||||++|||||+.+|++|+||
T Consensus 88 ~~~t~~~~l~~~~~~~~-----~~~~~~~~~~~l~~~~~l~~~~~~~-----~~~LS~G~~qrv~laral~~~p~llllD 157 (222)
T cd03224 88 PELTVEENLLLGAYARR-----RAKRKARLERVYELFPRLKERRKQL-----AGTLSGGEQQMLAIARALMSRPKLLLLD 157 (222)
T ss_pred CCCcHHHHHHHHhhhcC-----chhHHHHHHHHHHHHHhhhhhhhCc-----hhhCCHHHHHHHHHHHHHhcCCCEEEEC
Confidence 99999999987653321 112233456677776 455444433 3579999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCC
Q 001400 994 EPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1085)
Q Consensus 994 EPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~ 1054 (1085)
|||+|||+.++..+++.|++++++|+|||++||+++ ++...+|++++|++ |+++..|+.
T Consensus 158 EPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 216 (222)
T cd03224 158 EPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNAR-FALEIADRAYVLER-GRVVLEGTA 216 (222)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhccEEEEeeC-CeEEEeCCH
Confidence 999999999999999999998777899999999986 46788999999985 788888764
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-37 Score=334.59 Aligned_cols=202 Identities=28% Similarity=0.404 Sum_probs=170.8
Q ss_pred eEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCCh---hcccceEEEEccCCCCCCCCC
Q 001400 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFARISGYCEQNDIHSPGLT 918 (1085)
Q Consensus 842 ~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gy~~Q~~~~~~~~t 918 (1085)
..+|+|+||+|++|++++|+|+||||||||+++|+|..+ +.+|+|.++|.++.. ..+++.++|++|++.+++.+|
T Consensus 14 ~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 91 (242)
T cd03295 14 KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIE--PTSGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHMT 91 (242)
T ss_pred ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCeEcCcCChHHhhcceEEEccCccccCCCc
Confidence 569999999999999999999999999999999999866 468999999987542 234567999999999999999
Q ss_pred HHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCc--ccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Q 001400 919 VLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTS--LSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPT 996 (1085)
Q Consensus 919 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEPt 996 (1085)
++||+.+....+. .......+.++++++.+++.+ ..+.. +.+||+|||||++|||||+.+|++|||||||
T Consensus 92 v~e~l~~~~~~~~---~~~~~~~~~~~~~l~~l~l~~~~~~~~~-----~~~LS~G~~qrv~laral~~~p~llllDEPt 163 (242)
T cd03295 92 VEENIALVPKLLK---WPKEKIRERADELLALVGLDPAEFADRY-----PHELSGGQQQRVGVARALAADPPLLLMDEPF 163 (242)
T ss_pred HHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCCcHHHHhcC-----hhhCCHHHHHHHHHHHHHhcCCCEEEecCCc
Confidence 9999987643321 122334456788999999875 44443 3579999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHC-CceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCC
Q 001400 997 SGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1085)
Q Consensus 997 sgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~ 1055 (1085)
+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|++++|++ |++++.|+..
T Consensus 164 ~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~ 221 (242)
T cd03295 164 GALDPITRDQLQEEFKRLQQELGKTIVFVTHDID-EAFRLADRIAIMKN-GEIVQVGTPD 221 (242)
T ss_pred ccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEecCHH
Confidence 999999999999999999764 899999999986 47788999999985 7888888753
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-37 Score=329.70 Aligned_cols=202 Identities=27% Similarity=0.427 Sum_probs=164.3
Q ss_pred cCCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCChhcccceEEEEccCCCCC--CC
Q 001400 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHS--PG 916 (1085)
Q Consensus 839 ~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gy~~Q~~~~~--~~ 916 (1085)
+++..+|+|+||+|++||+++|+|+||||||||+++|+|... +.+|+|.++|.++. ..++.++|++|++.+. +.
T Consensus 9 ~~~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~--~~~~~i~~v~q~~~~~~~~~ 84 (213)
T cd03235 9 YGGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLK--PTSGSIRVFGKPLE--KERKRIGYVPQRRSIDRDFP 84 (213)
T ss_pred ECCEEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--CCCCEEEECCccHH--HHHhheEEeccccccccCCC
Confidence 344679999999999999999999999999999999999865 46899999998653 3456799999998763 34
Q ss_pred CCHHHHHHHhhhhcCC-CcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCC
Q 001400 917 LTVLESLLFSAWLRLP-SEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEP 995 (1085)
Q Consensus 917 ~tv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEP 995 (1085)
.|++||+.+....... .........+.++++++.+++.+..+... ..||||||||++|||||+.+|++||||||
T Consensus 85 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~llllDEP 159 (213)
T cd03235 85 ISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQI-----GELSGGQQQRVLLARALVQDPDLLLLDEP 159 (213)
T ss_pred CcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 7999999875322110 00111223456788999999876655443 57999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEecCcEEEEec
Q 001400 996 TSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAG 1052 (1085)
Q Consensus 996 tsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g 1052 (1085)
|+|||+.++..+.+.|++++++|.|||++||+++ ++.+.+|++++|++ | +++.|
T Consensus 160 t~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~-~-~~~~g 213 (213)
T cd03235 160 FAGVDPKTQEDIYELLRELRREGMTILVVTHDLG-LVLEYFDRVLLLNR-T-VVASG 213 (213)
T ss_pred cccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEcC-c-EeecC
Confidence 9999999999999999998777899999999986 46778999999974 4 55543
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-37 Score=346.88 Aligned_cols=229 Identities=24% Similarity=0.373 Sum_probs=186.8
Q ss_pred cCCCCCCcEEEEeeeEEEEEEecCCCCCCChhhHHHHHHHHHHHHHhHhcCCCcceeecccceeeEeCCeEEEEeCCCCC
Q 001400 93 VDLELPKIEVRFQNLTVESFVHLGSRALPTIPNFIFNMTEALLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSS 172 (1085)
Q Consensus 93 ~~~~~~~~~v~~~~l~v~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~Gs 172 (1085)
..+..|.=.|+|+|++.+-. ++++||+++||+|++|+.+||+|+|||
T Consensus 343 ~~i~~~~~~I~F~dV~f~y~---------------------------------~k~~iL~gvsf~I~kGekVaIvG~nGs 389 (591)
T KOG0057|consen 343 LPIELFGGSIEFDDVHFSYG---------------------------------PKRKVLKGVSFTIPKGEKVAIVGSNGS 389 (591)
T ss_pred CCcccCCCcEEEEeeEEEeC---------------------------------CCCceecceeEEecCCCEEEEECCCCC
Confidence 46667777899999986531 234599999999999999999999999
Q ss_pred ChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCC---CceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCchhhhHHH
Q 001400 173 GKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP---PRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITEL 249 (1085)
Q Consensus 173 GKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~ 249 (1085)
||||+|++|.+.++ + +|+|.+||.++++..+ ++.||||||+..+|.+ ||.+||.++.. ...++.+.+.
T Consensus 390 GKSTilr~LlrF~d-~---sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFnd-TIl~NI~YGn~----sas~eeV~e~ 460 (591)
T KOG0057|consen 390 GKSTILRLLLRFFD-Y---SGSILIDGQDIKEVSLESLRQSIGVVPQDSVLFND-TILYNIKYGNP----SASDEEVVEA 460 (591)
T ss_pred CHHHHHHHHHHHhc-c---CCcEEECCeeHhhhChHHhhhheeEeCCcccccch-hHHHHhhcCCC----CcCHHHHHHH
Confidence 99999999999987 4 9999999999887653 6889999999987765 99999999742 2233444455
Q ss_pred HHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCcccccCchhhhhHHHHHHHHhCCCcEeE
Q 001400 250 ARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLF 329 (1085)
Q Consensus 250 ~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqkqRvsia~al~~~p~vll 329 (1085)
|++- ++ .|. ...|++.++|.||+++. -|||||||||++|||++.+|+|++
T Consensus 461 ~k~a---~~-----------------------hd~---i~~l~~GY~T~VGerG~-~LSGGekQrvslaRa~lKda~Il~ 510 (591)
T KOG0057|consen 461 CKRA---GL-----------------------HDV---ISRLPDGYQTLVGERGL-MLSGGEKQRVSLARAFLKDAPILL 510 (591)
T ss_pred HHHc---Cc-----------------------HHH---HHhccccchhhHhhccc-ccccchHHHHHHHHHHhcCCCeEE
Confidence 5432 11 111 34588999999998765 599999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEecCCeEEEecChhhHHH
Q 001400 330 MDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVLD 397 (1085)
Q Consensus 330 lDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~~G~iv~~G~~~~~~~ 397 (1085)
+|||||+||+.|..+|++.+.... .++|+|+ +.|.. .+..-||+|++|++|++...|+.++++.
T Consensus 511 ~DEaTS~LD~~TE~~i~~~i~~~~--~~rTvI~-IvH~l-~ll~~~DkI~~l~nG~v~e~gth~ell~ 574 (591)
T KOG0057|consen 511 LDEATSALDSETEREILDMIMDVM--SGRTVIM-IVHRL-DLLKDFDKIIVLDNGTVKEYGTHSELLA 574 (591)
T ss_pred ecCcccccchhhHHHHHHHHHHhc--CCCeEEE-EEecc-hhHhcCCEEEEEECCeeEEeccHHHHhh
Confidence 999999999999999999999842 3455554 55655 4567899999999999999999999976
|
|
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-37 Score=338.21 Aligned_cols=217 Identities=18% Similarity=0.285 Sum_probs=176.5
Q ss_pred CCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCChh------cccceEEEEccCCCC
Q 001400 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE------TFARISGYCEQNDIH 913 (1085)
Q Consensus 840 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~------~~~~~~gy~~Q~~~~ 913 (1085)
++..+|+||||+|++|++++|+|+||||||||+++|+|..+ +.+|+|.++|.++... ..++.++|++|++.+
T Consensus 18 ~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~ 95 (269)
T PRK11831 18 GNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIA--PDHGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGAL 95 (269)
T ss_pred CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEccccChhhHHHHhhcEEEEeccccc
Confidence 45679999999999999999999999999999999999876 4689999999875421 235679999999988
Q ss_pred CCCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q 001400 914 SPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMD 993 (1085)
Q Consensus 914 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlD 993 (1085)
++.+|+.||+.+...... ........+.+.++++.+++.+..+..+ ..||||||||++|||||+.+|++||||
T Consensus 96 ~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgGq~qrv~laral~~~p~lllLD 168 (269)
T PRK11831 96 FTDMNVFDNVAYPLREHT--QLPAPLLHSTVMMKLEAVGLRGAAKLMP-----SELSGGMARRAALARAIALEPDLIMFD 168 (269)
T ss_pred CCCCCHHHHHHHHHHHcc--CCCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 889999999987532211 1122333455778899999977665543 579999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHC-CceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCCCc----hHHHHHHHHh
Q 001400 994 EPTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGSK----SCELIKYFEV 1067 (1085)
Q Consensus 994 EPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~~~----~~~~~~~~~~ 1067 (1085)
|||+|||+.++..+.+.|+++.++ |+|||++||+++ ++.+.+|++++|++ |++++.|+..+. ...+-.|++.
T Consensus 169 EPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~-~~~~~~d~v~~l~~-G~i~~~g~~~~~~~~~~~~~~~~~~~ 245 (269)
T PRK11831 169 EPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVP-EVLSIADHAYIVAD-KKIVAHGSAQALQANPDPRVRQFLDG 245 (269)
T ss_pred CCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhhCEEEEEEC-CEEEEeCCHHHHhcCCcHHHHHHHHH
Confidence 999999999999999999998765 899999999986 47788999999985 789988875431 1234556654
|
|
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-37 Score=347.84 Aligned_cols=206 Identities=28% Similarity=0.372 Sum_probs=176.8
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCC--CCceEEEEccCCCCCCCCC
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV--PPRTSAYVSQQDWQVAEMT 225 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~lT 225 (1085)
+.+|+|+|++|++|++++|+||||||||||+++|+|.+.|+ +|+|.++|+++.... .++.++|++|++.+++.+|
T Consensus 54 ~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~---~G~i~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~t 130 (340)
T PRK13536 54 KAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPD---AGKITVLGVPVPARARLARARIGVVPQFDNLDLEFT 130 (340)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC---ceEEEECCEECCcchHHHhccEEEEeCCccCCCCCc
Confidence 46999999999999999999999999999999999999886 999999999875432 3467999999999899999
Q ss_pred HHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCcccc
Q 001400 226 VRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLK 305 (1085)
Q Consensus 226 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 305 (1085)
|+||+.|.+...+... .+....++++++.+||++.+++.++
T Consensus 131 v~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~ll~~~~L~~~~~~~~~----- 171 (340)
T PRK13536 131 VRENLLVFGRYFGMST----------------------------------REIEAVIPSLLEFARLESKADARVS----- 171 (340)
T ss_pred HHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhCCChh-----
Confidence 9999987554332100 0011236678899999988887765
Q ss_pred cCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEecCCe
Q 001400 306 GISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQ 385 (1085)
Q Consensus 306 ~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~~G~ 385 (1085)
+|||||||||+||+||+.+|++|+|||||+|||+.++.++++.|++++.. +++|+.++|..+++.++||+|++|++|+
T Consensus 172 ~LS~G~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~--g~tilisSH~l~e~~~~~d~i~il~~G~ 249 (340)
T PRK13536 172 DLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLAR--GKTILLTTHFMEEAERLCDRLCVLEAGR 249 (340)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC--CCEEEEECCCHHHHHHhCCEEEEEECCE
Confidence 69999999999999999999999999999999999999999999998753 4566668899999999999999999999
Q ss_pred EEEecChhhHHH
Q 001400 386 IVYQGPRVSVLD 397 (1085)
Q Consensus 386 iv~~G~~~~~~~ 397 (1085)
++++|+.+++..
T Consensus 250 i~~~g~~~~l~~ 261 (340)
T PRK13536 250 KIAEGRPHALID 261 (340)
T ss_pred EEEEcCHHHHHh
Confidence 999999988764
|
|
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-37 Score=328.81 Aligned_cols=193 Identities=27% Similarity=0.357 Sum_probs=164.1
Q ss_pred eEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCCh------hcccceEEEEccCCCCCC
Q 001400 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ------ETFARISGYCEQNDIHSP 915 (1085)
Q Consensus 842 ~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~------~~~~~~~gy~~Q~~~~~~ 915 (1085)
+.+|+|+||++++|++++|+|+||||||||+++|+|..+ +.+|+|.++|.++.. ..+++.++|++|++.+++
T Consensus 14 ~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~ 91 (214)
T cd03292 14 TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEEL--PTSGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLP 91 (214)
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEcccCCHHHHHHHHHheEEEecCchhcc
Confidence 469999999999999999999999999999999999865 468999999987542 124567999999999999
Q ss_pred CCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCC
Q 001400 916 GLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEP 995 (1085)
Q Consensus 916 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEP 995 (1085)
.+|++||+.+....+. .......+.++++++.+++.+..+... .+||+|||||++|||||+.+|++|+||||
T Consensus 92 ~~t~~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEP 163 (214)
T cd03292 92 DRNVYENVAFALEVTG---VPPREIRKRVPAALELVGLSHKHRALP-----AELSGGEQQRVAIARAIVNSPTILIADEP 163 (214)
T ss_pred CCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCHHHhhCCh-----hhcCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 9999999988643321 122334456788999999876655443 47999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEecC
Q 001400 996 TSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 1045 (1085)
Q Consensus 996 tsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~g 1045 (1085)
|+|||+.++..+.+.|+++.++|.|||++||+++ .+.+.+|++++|++|
T Consensus 164 t~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~-~~~~~~d~i~~l~~G 212 (214)
T cd03292 164 TGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKE-LVDTTRHRVIALERG 212 (214)
T ss_pred CCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeCC
Confidence 9999999999999999998777999999999986 466779999999854
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-37 Score=319.73 Aligned_cols=221 Identities=23% Similarity=0.355 Sum_probs=186.8
Q ss_pred cceeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCCC----ceEEEEccCCCCC
Q 001400 146 SKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPP----RTSAYVSQQDWQV 221 (1085)
Q Consensus 146 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~~----~~~~yv~Q~d~~~ 221 (1085)
....+++|||+++++||+++|+||||||||||+|+|+|.++|+ +|+|.++|++++...+. .-++.-+|...+|
T Consensus 15 GGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~---~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~rlF 91 (250)
T COG0411 15 GGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPS---SGTVIFRGRDITGLPPHRIARLGIARTFQITRLF 91 (250)
T ss_pred CCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCC---CceEEECCcccCCCCHHHHHhccceeeccccccc
Confidence 3467999999999999999999999999999999999999987 99999999999877653 4678899999999
Q ss_pred CCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccC
Q 001400 222 AEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGD 301 (1085)
Q Consensus 222 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 301 (1085)
++|||-||+..++..+.. +.......+.. ....+...+..++|+.+||.+.+|+..|+
T Consensus 92 ~~lTVlENv~va~~~~~~---~~~~l~~~~~~-------------------~~e~~~~e~A~~~Le~vgL~~~a~~~A~~ 149 (250)
T COG0411 92 PGLTVLENVAVGAHARLG---LSGLLGRPRAR-------------------KEEREARERARELLEFVGLGELADRPAGN 149 (250)
T ss_pred CCCcHHHHHHHHhhhhhh---hhhhhccccch-------------------hhHHHHHHHHHHHHHHcCCchhhcchhhc
Confidence 999999999988664421 00000000000 00112234578899999999999998875
Q ss_pred cccccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEe
Q 001400 302 EMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILL 381 (1085)
Q Consensus 302 ~~~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L 381 (1085)
||+|||||+.|||||+.+|++|+||||.+||.+..+.++.+.++++.+. ++.+|+.+-|+..-++.+||||+||
T Consensus 150 -----LsyG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~-~g~tillIEHdM~~Vm~l~dri~Vl 223 (250)
T COG0411 150 -----LSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDR-GGVTILLIEHDMKLVMGLADRIVVL 223 (250)
T ss_pred -----CChhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhc-CCcEEEEEEeccHHHhhhccEEEec
Confidence 9999999999999999999999999999999999999999999999864 4577777999999999999999999
Q ss_pred cCCeEEEecChhhHHH
Q 001400 382 SEGQIVYQGPRVSVLD 397 (1085)
Q Consensus 382 ~~G~iv~~G~~~~~~~ 397 (1085)
+.|+++.+|+++++.+
T Consensus 224 ~~G~~IAeG~P~eV~~ 239 (250)
T COG0411 224 NYGEVIAEGTPEEVRN 239 (250)
T ss_pred cCCcCcccCCHHHHhc
Confidence 9999999999999863
|
|
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-37 Score=333.91 Aligned_cols=207 Identities=24% Similarity=0.350 Sum_probs=172.6
Q ss_pred ccCCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCCh----hcccceEEEEccCCCC
Q 001400 838 LEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ----ETFARISGYCEQNDIH 913 (1085)
Q Consensus 838 ~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~----~~~~~~~gy~~Q~~~~ 913 (1085)
.++++.+|+|+||++++|+++||+|+||||||||+++|+|..+ +.+|+|.++|.++.. ...++.++|++|++.+
T Consensus 12 ~~~~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~ 89 (241)
T PRK10895 12 AYKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVP--RDAGNIIIDDEDISLLPLHARARRGIGYLPQEASI 89 (241)
T ss_pred EeCCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECCCCCHHHHHHhCeEEeccCCcc
Confidence 3345679999999999999999999999999999999999866 468999999987642 1235679999999988
Q ss_pred CCCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q 001400 914 SPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMD 993 (1085)
Q Consensus 914 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlD 993 (1085)
++.+|++||+.+....+. ..........++++++.+++.+..+.. +..||+|||||++|||||+.+|++|+||
T Consensus 90 ~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~laral~~~p~llllD 162 (241)
T PRK10895 90 FRRLSVYDNLMAVLQIRD--DLSAEQREDRANELMEEFHIEHLRDSM-----GQSLSGGERRRVEIARALAANPKFILLD 162 (241)
T ss_pred cccCcHHHHHhhhhhccc--ccCHHHHHHHHHHHHHHcCCHHHhhcc-----hhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 888999999987542221 112233445678889999887655443 3579999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCC
Q 001400 994 EPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1085)
Q Consensus 994 EPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~ 1055 (1085)
|||+|||+.++..+.+.++++.++|.|||++||+++ ++.+.+|++++|++ |++++.|+..
T Consensus 163 EPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~-~~~~~~d~v~~l~~-G~i~~~~~~~ 222 (241)
T PRK10895 163 EPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVR-ETLAVCERAYIVSQ-GHLIAHGTPT 222 (241)
T ss_pred CCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHH-HHHHhcCEEEEEeC-CeEEeeCCHH
Confidence 999999999999999999998777999999999986 57788999999985 6888888754
|
|
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-37 Score=328.08 Aligned_cols=193 Identities=28% Similarity=0.393 Sum_probs=161.6
Q ss_pred eEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCCh---hcccceEEEEccCCC-CCCCC
Q 001400 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFARISGYCEQNDI-HSPGL 917 (1085)
Q Consensus 842 ~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gy~~Q~~~-~~~~~ 917 (1085)
..+|+|+||+|++|+++||+||||||||||+++|+|... +.+|+|.++|.++.. ..+++.++|++|++. .++..
T Consensus 14 ~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 91 (211)
T cd03225 14 RPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLG--PTSGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGP 91 (211)
T ss_pred eeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEEcccCCHHHHHhhceEEecChhhhcCCC
Confidence 679999999999999999999999999999999999866 468999999987532 334567999999975 35678
Q ss_pred CHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCC
Q 001400 918 TVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTS 997 (1085)
Q Consensus 918 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEPts 997 (1085)
|++||+.+....+. .........++++++.+++.+..+... ..||||||||++|||||+.+|++|+|||||+
T Consensus 92 t~~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~laral~~~p~llllDEPt~ 163 (211)
T cd03225 92 TVEEEVAFGLENLG---LPEEEIEERVEEALELVGLEGLRDRSP-----FTLSGGQKQRVAIAGVLAMDPDILLLDEPTA 163 (211)
T ss_pred cHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCcHhhhcCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 99999987543221 122233445788899999876555443 5799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEecC
Q 001400 998 GLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 1045 (1085)
Q Consensus 998 gLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~g 1045 (1085)
|||+.++..+++.|+++.++|+|||++||+++ ++...||++++|++|
T Consensus 164 ~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~G 210 (211)
T cd03225 164 GLDPAGRRELLELLKKLKAEGKTIIIVTHDLD-LLLELADRVIVLEDG 210 (211)
T ss_pred cCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeCC
Confidence 99999999999999999877999999999986 466779999999864
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=331.01 Aligned_cols=204 Identities=27% Similarity=0.406 Sum_probs=169.2
Q ss_pred cCCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCCh--hcccceEEEEccCCCCCCC
Q 001400 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ--ETFARISGYCEQNDIHSPG 916 (1085)
Q Consensus 839 ~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~--~~~~~~~gy~~Q~~~~~~~ 916 (1085)
+++..+|+|+||+|++||++||+|+||||||||+++|+|... +.+|+|.++|.++.. ....+.++|++|++.+++.
T Consensus 11 ~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~i~~~~~~~~~~i~~~~q~~~~~~~ 88 (236)
T TIGR03864 11 YGARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYV--AQEGQISVAGHDLRRAPRAALARLGVVFQQPTLDLD 88 (236)
T ss_pred ECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCEEcccCChhhhhhEEEeCCCCCCccc
Confidence 345679999999999999999999999999999999999866 468999999987542 1223579999999988889
Q ss_pred CCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Q 001400 917 LTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPT 996 (1085)
Q Consensus 917 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEPt 996 (1085)
.|++||+.+....+. .......+.++++++.+++.+..+... ..||+|||||++|||||+.+|+||||||||
T Consensus 89 ~t~~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrl~laral~~~p~llllDEP~ 160 (236)
T TIGR03864 89 LSVRQNLRYHAALHG---LSRAEARERIAALLARLGLAERADDKV-----RELNGGHRRRVEIARALLHRPALLLLDEPT 160 (236)
T ss_pred CcHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCChhhhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 999999987643321 122333456788899999876655443 479999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHH-CCceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCC
Q 001400 997 SGLDARAAAIVMRTVRNIVN-TGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1085)
Q Consensus 997 sgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~ 1055 (1085)
+|||+.++..+.+.|+++++ +|.|||++||+++. + +.+|++++|++ |++++.|+..
T Consensus 161 ~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~-~-~~~d~i~~l~~-G~i~~~~~~~ 217 (236)
T TIGR03864 161 VGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDE-I-EADDRLVVLHR-GRVLADGAAA 217 (236)
T ss_pred cCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhh-H-hhCCEEEEEeC-CeEEEeCCHH
Confidence 99999999999999999875 58999999999863 4 45999999985 6888887653
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-37 Score=326.88 Aligned_cols=200 Identities=33% Similarity=0.481 Sum_probs=167.5
Q ss_pred cCCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCCh--hcccceEEEEccCCCCCCC
Q 001400 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ--ETFARISGYCEQNDIHSPG 916 (1085)
Q Consensus 839 ~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~--~~~~~~~gy~~Q~~~~~~~ 916 (1085)
+++..+|+|+||++++| +++|+|+||||||||+++|+|..+ +.+|+|.++|.++.. ...++.++|++|++.+++.
T Consensus 10 ~~~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~ 86 (211)
T cd03264 10 YGKKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTP--PSSGTIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPN 86 (211)
T ss_pred ECCEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCC--CCccEEEECCCccccchHHHHhheEEecCCCccccc
Confidence 34557999999999999 999999999999999999999866 468999999987543 2345679999999999999
Q ss_pred CCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Q 001400 917 LTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPT 996 (1085)
Q Consensus 917 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEPt 996 (1085)
+|+.||+.+....+. ....+..+.++++++.+++.+..+... ..||+|||||++|||||+.+|++|||||||
T Consensus 87 ~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~llllDEPt 158 (211)
T cd03264 87 FTVREFLDYIAWLKG---IPSKEVKARVDEVLELVNLGDRAKKKI-----GSLSGGMRRRVGIAQALVGDPSILIVDEPT 158 (211)
T ss_pred CCHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHCCCHHHHhCch-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 999999987654331 122233456788999999976655433 579999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEecCcEEEEec
Q 001400 997 SGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAG 1052 (1085)
Q Consensus 997 sgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g 1052 (1085)
+|||+.++..+.+.|+++++ +.|||++||+++ .+.+.+|++++|++ |++++.|
T Consensus 159 ~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~-~~~~~~d~i~~l~~-g~i~~~g 211 (211)
T cd03264 159 AGLDPEERIRFRNLLSELGE-DRIVILSTHIVE-DVESLCNQVAVLNK-GKLVFEG 211 (211)
T ss_pred ccCCHHHHHHHHHHHHHHhC-CCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEecC
Confidence 99999999999999999875 699999999986 46678999999985 6777654
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-36 Score=325.12 Aligned_cols=204 Identities=19% Similarity=0.282 Sum_probs=152.0
Q ss_pred ccceeeeccceeeeeccccccccccccCCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcC
Q 001400 813 QPLSMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISG 892 (1085)
Q Consensus 813 ~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g 892 (1085)
.|..+-.++++|.++ +.++++++++|-|.--..+|||||||.||||||++|.|... +..|+..-+
T Consensus 583 ~PPvLGlH~VtFgy~------------gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~--P~~GE~RKn- 647 (807)
T KOG0066|consen 583 NPPVLGLHDVTFGYP------------GQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLD--PNDGELRKN- 647 (807)
T ss_pred CCCeeecccccccCC------------CCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCC--CCcchhhcc-
Confidence 344455566655432 56788999999999999999999999999999999999776 446664322
Q ss_pred ccCChhcccceEEEEccCCC--CCCCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCC
Q 001400 893 YPKRQETFARISGYCEQNDI--HSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLS 970 (1085)
Q Consensus 893 ~~~~~~~~~~~~gy~~Q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS 970 (1085)
.+-+||+..|... +-..-|.-|.|.-.. ..+. +.....+-.+||...++.+- +..||
T Consensus 648 -------hrL~iG~FdQh~~E~L~~Eetp~EyLqr~F------Nlpy----q~ARK~LG~fGL~sHAHTik----ikdLS 706 (807)
T KOG0066|consen 648 -------HRLRIGWFDQHANEALNGEETPVEYLQRKF------NLPY----QEARKQLGTFGLASHAHTIK----IKDLS 706 (807)
T ss_pred -------ceeeeechhhhhHHhhccccCHHHHHHHhc------CCCh----HHHHHHhhhhhhhhccceEe----eeecC
Confidence 2345888887643 334456777664221 1122 22346677788877666543 45799
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEecCcEEEE
Q 001400 971 TEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIY 1050 (1085)
Q Consensus 971 ~Gqrqrl~iA~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~ 1050 (1085)
||||-||++|-.-+..|+||||||||++||.++...+-++|+++ ...||++|||..+ +.+.-..++|+.+.|.-..
T Consensus 707 GGQKaRValaeLal~~PDvlILDEPTNNLDIESIDALaEAIney---~GgVi~VsHDeRL-i~eT~C~LwVvE~Q~i~eI 782 (807)
T KOG0066|consen 707 GGQKARVALAELALGGPDVLILDEPTNNLDIESIDALAEAINEY---NGGVIMVSHDERL-IVETDCNLWVVENQGIDEI 782 (807)
T ss_pred CcchHHHHHHHHhcCCCCEEEecCCCCCcchhhHHHHHHHHHhc---cCcEEEEecccce-eeecCceEEEEccCChhhc
Confidence 99999999999999999999999999999999999999999986 5689999999764 5565567888887776566
Q ss_pred ecCCCC
Q 001400 1051 AGPLGS 1056 (1085)
Q Consensus 1051 ~g~~~~ 1056 (1085)
.|...+
T Consensus 783 dGdFeD 788 (807)
T KOG0066|consen 783 DGDFED 788 (807)
T ss_pred cccHHH
Confidence 666543
|
|
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-37 Score=342.57 Aligned_cols=203 Identities=25% Similarity=0.331 Sum_probs=169.4
Q ss_pred eEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCC-------------------------
Q 001400 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKR------------------------- 896 (1085)
Q Consensus 842 ~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~------------------------- 896 (1085)
..+|+||||+|++||++||+|+||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 20 ~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (305)
T PRK13651 20 LKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLL--PDTGTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKI 97 (305)
T ss_pred ccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCcEEEEeceeccccccccccccccccccccccccccc
Confidence 359999999999999999999999999999999999876 45899999986531
Q ss_pred --hhcccceEEEEccCCC-CCCCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCC-cccccccCCCCCCCCCHH
Q 001400 897 --QETFARISGYCEQNDI-HSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELT-SLSGALIGLPGINGLSTE 972 (1085)
Q Consensus 897 --~~~~~~~~gy~~Q~~~-~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~~~~~LS~G 972 (1085)
....++.+||++|++. .+...||+||+.|+.... ........+.++++++.++|. ++.+.. +..||||
T Consensus 98 ~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~~LSgG 169 (305)
T PRK13651 98 KKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSM---GVSKEEAKKRAAKYIELVGLDESYLQRS-----PFELSGG 169 (305)
T ss_pred chHHHHHhceEEEeeCcccccccccHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHcCCChhhhhCC-----hhhCCHH
Confidence 1234677999999862 344579999999875432 223344456788999999996 555543 3579999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEecCcEEEEec
Q 001400 973 QRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAG 1052 (1085)
Q Consensus 973 qrqrl~iA~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g 1052 (1085)
||||++||++|+.+|++|||||||+|||+.++..+++.|+++.+.|.|||++|||++ .+.+.||++++|++ |++++.|
T Consensus 170 qkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~-~~~~~adrv~vl~~-G~i~~~g 247 (305)
T PRK13651 170 QKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLD-NVLEWTKRTIFFKD-GKIIKDG 247 (305)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHH-HHHHhCCEEEEEEC-CEEEEEC
Confidence 999999999999999999999999999999999999999999877999999999986 47788999999985 6899988
Q ss_pred CCCC
Q 001400 1053 PLGS 1056 (1085)
Q Consensus 1053 ~~~~ 1056 (1085)
+..+
T Consensus 248 ~~~~ 251 (305)
T PRK13651 248 DTYD 251 (305)
T ss_pred CHHH
Confidence 7643
|
|
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-37 Score=341.59 Aligned_cols=202 Identities=25% Similarity=0.318 Sum_probs=168.7
Q ss_pred eEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCCh-------hcccceEEEEccCCC-C
Q 001400 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ-------ETFARISGYCEQNDI-H 913 (1085)
Q Consensus 842 ~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~-------~~~~~~~gy~~Q~~~-~ 913 (1085)
..+|+||||+|++||++||+|+||||||||+++|+|... +.+|+|.++|+++.. ..+++.+|||+|++. .
T Consensus 20 ~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~ 97 (290)
T PRK13634 20 RRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQ--PTSGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQ 97 (290)
T ss_pred ccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCcEEEECCEECccccccchHHHHHhhEEEEeeCchhh
Confidence 469999999999999999999999999999999999876 468999999987631 235667999999863 2
Q ss_pred CCCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCC-cccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q 001400 914 SPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELT-SLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFM 992 (1085)
Q Consensus 914 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illl 992 (1085)
+...||+||+.|+.... .....+..+.++++++.++|. ...+.. +..||+|||||++|||||+.+|++|||
T Consensus 98 l~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~~LSgGq~qrv~lAraL~~~P~llll 169 (290)
T PRK13634 98 LFEETVEKDICFGPMNF---GVSEEDAKQKAREMIELVGLPEELLARS-----PFELSGGQMRRVAIAGVLAMEPEVLVL 169 (290)
T ss_pred hhhhhHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCChhhhhCC-----cccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 33579999998875322 122333445688999999996 455543 357999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHC-CceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCC
Q 001400 993 DEPTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1085)
Q Consensus 993 DEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~ 1055 (1085)
||||+|||+.++..+++.|+++.++ |.|||++|||++ ++.+.||++++|+ +|++++.|+..
T Consensus 170 DEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~-~~~~~~drv~~l~-~G~i~~~g~~~ 231 (290)
T PRK13634 170 DEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSME-DAARYADQIVVMH-KGTVFLQGTPR 231 (290)
T ss_pred ECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEEECCHH
Confidence 9999999999999999999999764 999999999987 4778899999998 57899988754
|
|
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-35 Score=336.69 Aligned_cols=215 Identities=27% Similarity=0.478 Sum_probs=177.9
Q ss_pred ccceeeeccceeeeeccccccccccccCCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcC
Q 001400 813 QPLSMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISG 892 (1085)
Q Consensus 813 ~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g 892 (1085)
.+..+..++++|.++ +++++++|+|+++++|+++||+|+||||||||+++|+|..+ +.+|+|.+||
T Consensus 317 ~~~ei~~~~l~~~y~------------~g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~--~~~G~I~vng 382 (559)
T COG4988 317 PPIEISLENLSFRYP------------DGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLA--PTQGEIRVNG 382 (559)
T ss_pred CCceeeecceEEecC------------CCCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCC--CCCceEEECC
Confidence 345555566666542 23389999999999999999999999999999999999877 4689999999
Q ss_pred ccCC---hhcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCccccc------ccCC
Q 001400 893 YPKR---QETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGA------LIGL 963 (1085)
Q Consensus 893 ~~~~---~~~~~~~~gy~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~------~~~~ 963 (1085)
.+.. ...+++.++||+|+|.++++ |++||+.++. + +. .++.+.++++..++.+..+. .++.
T Consensus 383 ~~l~~l~~~~~~k~i~~v~Q~p~lf~g-TireNi~l~~----~-~~----s~e~i~~al~~a~l~~~v~~p~GLdt~ige 452 (559)
T COG4988 383 IDLRDLSPEAWRKQISWVSQNPYLFAG-TIRENILLAR----P-DA----SDEEIIAALDQAGLLEFVPKPDGLDTVIGE 452 (559)
T ss_pred ccccccCHHHHHhHeeeeCCCCccccc-cHHHHhhccC----C-cC----CHHHHHHHHHHhcHHHhhcCCCcccchhcc
Confidence 8754 56789999999999999876 9999998752 1 11 23456788888888766554 2332
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEe
Q 001400 964 PGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMK 1043 (1085)
Q Consensus 964 ~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~ 1043 (1085)
++.+|||||+|||++||||+.+++++++||||++||.++.+.|++.|.++++ ++|||++||++. ....+|+|++|+
T Consensus 453 -~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~-~ktvl~itHrl~--~~~~~D~I~vld 528 (559)
T COG4988 453 -GGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAK-QKTVLVITHRLE--DAADADRIVVLD 528 (559)
T ss_pred -CCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHh-CCeEEEEEcChH--HHhcCCEEEEec
Confidence 3467999999999999999999999999999999999999999999999875 699999999974 567889999998
Q ss_pred cCcEEEEecCCCC
Q 001400 1044 RGGELIYAGPLGS 1056 (1085)
Q Consensus 1044 ~gG~~~~~g~~~~ 1056 (1085)
+ |+++..|...+
T Consensus 529 ~-G~l~~~g~~~~ 540 (559)
T COG4988 529 N-GRLVEQGTHEE 540 (559)
T ss_pred C-CceeccCCHHH
Confidence 4 78999887543
|
|
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=328.30 Aligned_cols=197 Identities=26% Similarity=0.323 Sum_probs=165.7
Q ss_pred CeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCCh---h---cccceEEEEccCCCCC
Q 001400 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---E---TFARISGYCEQNDIHS 914 (1085)
Q Consensus 841 ~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~---~---~~~~~~gy~~Q~~~~~ 914 (1085)
+..+|+|+||+|++||++||+|+||||||||+++|+|..+ +.+|+|.++|.++.. . .+++.++|++|++.++
T Consensus 14 ~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~~~q~~~~~ 91 (222)
T PRK10908 14 GRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIER--PSAGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLL 91 (222)
T ss_pred CCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEcccCChhHHHHHHhheEEEecCcccc
Confidence 3569999999999999999999999999999999999876 568999999987532 1 2456799999999888
Q ss_pred CCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Q 001400 915 PGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDE 994 (1085)
Q Consensus 915 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDE 994 (1085)
+..|++||+.+....+. ....+....++++++.+++.+..+.. +..||+|||||++|||||+.+|++|+|||
T Consensus 92 ~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~laral~~~p~llllDE 163 (222)
T PRK10908 92 MDRTVYDNVAIPLIIAG---ASGDDIRRRVSAALDKVGLLDKAKNF-----PIQLSGGEQQRVGIARAVVNKPAVLLADE 163 (222)
T ss_pred ccccHHHHHHhHHHhcC---CCHHHHHHHHHHHHHHcCChhhhhCC-----chhCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 89999999988654321 22233344577889999987665543 25799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEecCcEEE
Q 001400 995 PTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELI 1049 (1085)
Q Consensus 995 PtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~ 1049 (1085)
||+|||+.++..+.+.|+++.++|.|||++||+++ ++...+|++++|++ |+++
T Consensus 164 Pt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~ 216 (222)
T PRK10908 164 PTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIG-LISRRSYRMLTLSD-GHLH 216 (222)
T ss_pred CCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEc
Confidence 99999999999999999998777899999999986 46677999999986 5653
|
|
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-36 Score=338.15 Aligned_cols=202 Identities=25% Similarity=0.325 Sum_probs=169.8
Q ss_pred eEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCCh---hcccceEEEEccCCC-CCCCC
Q 001400 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFARISGYCEQNDI-HSPGL 917 (1085)
Q Consensus 842 ~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gy~~Q~~~-~~~~~ 917 (1085)
..+|+||||+|++||++||+|+||||||||+++|+|... +.+|+|.++|.+... ...++.+||++|++. .++..
T Consensus 18 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~ 95 (274)
T PRK13647 18 TKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYL--PQRGRVKVMGREVNAENEKWVRSKVGLVFQDPDDQVFSS 95 (274)
T ss_pred CeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCceEEEECCEECCCCCHHHHHhhEEEEecChhhhhccC
Confidence 469999999999999999999999999999999999876 468999999987643 234567999999873 34568
Q ss_pred CHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCC
Q 001400 918 TVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTS 997 (1085)
Q Consensus 918 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEPts 997 (1085)
||.||+.|+.... ........+.++++++.+++.+..+... ..||||||||++|||||+.+|++|||||||+
T Consensus 96 tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LSgG~~qrv~laraL~~~p~llllDEPt~ 167 (274)
T PRK13647 96 TVWDDVAFGPVNM---GLDKDEVERRVEEALKAVRMWDFRDKPP-----YHLSYGQKKRVAIAGVLAMDPDVIVLDEPMA 167 (274)
T ss_pred cHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHHHhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEECCCc
Confidence 9999998764321 1223333456788999999977666543 5799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCC
Q 001400 998 GLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1085)
Q Consensus 998 gLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~ 1055 (1085)
|||+.++..+++.|++++++|.|||++||+++ .+.+.||++++|++ |++++.|+..
T Consensus 168 ~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~-~~~~~~d~i~~l~~-G~i~~~g~~~ 223 (274)
T PRK13647 168 YLDPRGQETLMEILDRLHNQGKTVIVATHDVD-LAAEWADQVIVLKE-GRVLAEGDKS 223 (274)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEECCHH
Confidence 99999999999999999877999999999986 46688999999985 7888888753
|
|
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-37 Score=326.84 Aligned_cols=197 Identities=26% Similarity=0.362 Sum_probs=165.5
Q ss_pred cCCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCCh-----hcccceEEEEccCCCC
Q 001400 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ-----ETFARISGYCEQNDIH 913 (1085)
Q Consensus 839 ~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~-----~~~~~~~gy~~Q~~~~ 913 (1085)
+++..+|+++||++++|+++||+|+||||||||+++|+|..+ +.+|+|.++|.+... ..+++.++|++|++.+
T Consensus 10 ~~~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~ 87 (213)
T cd03262 10 FGDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEE--PDSGTIIIDGLKLTDDKKNINELRQKVGMVFQQFNL 87 (213)
T ss_pred ECCeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEECCccchhHHHHHhcceEEeccccc
Confidence 344679999999999999999999999999999999999876 468999999987631 2346789999999998
Q ss_pred CCCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q 001400 914 SPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMD 993 (1085)
Q Consensus 914 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlD 993 (1085)
++.+|++||+.+...... ........+.++++++.+++.+..+... .+||+|||||++|||||+.+|++||||
T Consensus 88 ~~~~t~~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~llllD 160 (213)
T cd03262 88 FPHLTVLENITLAPIKVK--GMSKAEAEERALELLEKVGLADKADAYP-----AQLSGGQQQRVAIARALAMNPKVMLFD 160 (213)
T ss_pred CCCCcHHHHHHhHHHHhc--CCCHHHHHHHHHHHHHHcCCHhHhhhCc-----cccCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 889999999987542111 1122334456788899999876655543 579999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEecC
Q 001400 994 EPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 1045 (1085)
Q Consensus 994 EPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~g 1045 (1085)
|||+|||+.++..+.+.|+++.++|+|||++||+++ ++.+.+|++++|++|
T Consensus 161 EP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~-~~~~~~d~i~~l~~g 211 (213)
T cd03262 161 EPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMG-FAREVADRVIFMDDG 211 (213)
T ss_pred CCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeCC
Confidence 999999999999999999999877899999999986 466789999999864
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-36 Score=327.03 Aligned_cols=205 Identities=38% Similarity=0.712 Sum_probs=169.5
Q ss_pred eEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCC-CCeeeeEEEEcCccCChhcccceEEEEccCCCCCCCCCHH
Q 001400 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKT-GGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVL 920 (1085)
Q Consensus 842 ~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~-~~~~~G~i~i~g~~~~~~~~~~~~gy~~Q~~~~~~~~tv~ 920 (1085)
+.+|+|+||+|++||+++|+||||||||||+++|+|... +.+.+|+|.++|.+.....+++.++|++|++.+++.+|++
T Consensus 20 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 99 (226)
T cd03234 20 ARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKCVAYVRQDDILLPGLTVR 99 (226)
T ss_pred cccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhcccEEEeCCCCccCcCCcHH
Confidence 579999999999999999999999999999999999754 1246899999998775555677899999999999999999
Q ss_pred HHHHHhhhhcCCCcccHHHHHHHHHH-HHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCC
Q 001400 921 ESLLFSAWLRLPSEIELETQRAFVEE-VMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGL 999 (1085)
Q Consensus 921 e~l~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEPtsgL 999 (1085)
||+.|......+...........+++ .++.+++.+..+.. +..||+|||||++|||+|+.+|++|+|||||+||
T Consensus 100 enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrl~laral~~~p~illlDEP~~gL 174 (226)
T cd03234 100 ETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNL-----VKGISGGERRRVSIAVQLLWDPKVLILDEPTSGL 174 (226)
T ss_pred HHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhccc-----ccCcCHHHHHHHHHHHHHHhCCCEEEEeCCCcCC
Confidence 99998654332221111222233445 78888887665543 3579999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEecCcEEEEec
Q 001400 1000 DARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAG 1052 (1085)
Q Consensus 1000 D~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g 1052 (1085)
|+.++..+.+.++++.++|.|||++||++..++.+.+|++++|++ |++++.|
T Consensus 175 D~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~-G~i~~~g 226 (226)
T cd03234 175 DSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSS-GEIVYSG 226 (226)
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeC-CEEEecC
Confidence 999999999999998777899999999974357889999999985 7888764
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-36 Score=329.37 Aligned_cols=209 Identities=29% Similarity=0.394 Sum_probs=172.2
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCC-CceEEEEccCCCCCCCCCH
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP-PRTSAYVSQQDWQVAEMTV 226 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 226 (1085)
+.+|+|+|+++++|++++|+|||||||||||++|+|.++|. +|+|.++|.++..... ++.++|++|++.+++.+||
T Consensus 15 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv 91 (239)
T cd03296 15 FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPD---SGTILFGGEDATDVPVQERNVGFVFQHYALFRHMTV 91 (239)
T ss_pred EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCCccccceEEEecCCcccCCCCH
Confidence 36999999999999999999999999999999999998776 9999999988754322 4579999999988888999
Q ss_pred HHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCccccc
Q 001400 227 RETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKG 306 (1085)
Q Consensus 227 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 306 (1085)
+||+.|+....+...+.+ . ......++.+++.+||++..++.+ ..
T Consensus 92 ~e~l~~~~~~~~~~~~~~-----------------~-------------~~~~~~~~~~l~~~~l~~~~~~~~-----~~ 136 (239)
T cd03296 92 FDNVAFGLRVKPRSERPP-----------------E-------------AEIRAKVHELLKLVQLDWLADRYP-----AQ 136 (239)
T ss_pred HHHHhhhhhhccccccCC-----------------H-------------HHHHHHHHHHHHHcCChhhhhcCh-----hh
Confidence 999988643221100000 0 001123677899999987666554 46
Q ss_pred CchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEecCCeE
Q 001400 307 ISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQI 386 (1085)
Q Consensus 307 LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~~G~i 386 (1085)
|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++++.. +++|+.++|+..++..++|++++|++|++
T Consensus 137 LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~-~~tvii~sH~~~~~~~~~d~i~~l~~G~i 215 (239)
T cd03296 137 LSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDEL-HVTTVFVTHDQEEALEVADRVVVMNKGRI 215 (239)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHhCCEEEEEECCeE
Confidence 99999999999999999999999999999999999999999999987643 34566677888889999999999999999
Q ss_pred EEecChhhH
Q 001400 387 VYQGPRVSV 395 (1085)
Q Consensus 387 v~~G~~~~~ 395 (1085)
++.|+.+++
T Consensus 216 ~~~~~~~~~ 224 (239)
T cd03296 216 EQVGTPDEV 224 (239)
T ss_pred EEecCHHHH
Confidence 999988765
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=326.19 Aligned_cols=200 Identities=31% Similarity=0.432 Sum_probs=167.6
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCC-CCceEEEEccCCCCCCCCCH
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV-PPRTSAYVSQQDWQVAEMTV 226 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~-~~~~~~yv~Q~d~~~~~lTV 226 (1085)
+++|+|+|+++++|++++|+||||||||||+++|+|.++|. +|+|.++|.++.... .++.++|++|++.+++.+||
T Consensus 13 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv 89 (213)
T cd03259 13 VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPD---SGEILIDGRDVTGVPPERRNIGMVFQDYALFPHLTV 89 (213)
T ss_pred eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEEcCcCchhhccEEEEcCchhhccCCcH
Confidence 46999999999999999999999999999999999998876 999999998875432 24579999999888889999
Q ss_pred HHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCccccc
Q 001400 227 RETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKG 306 (1085)
Q Consensus 227 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 306 (1085)
+||+.++....+.. . . .....++++++.+||++..++.+ ..
T Consensus 90 ~~~l~~~~~~~~~~--~--------~------------------------~~~~~~~~~l~~~~l~~~~~~~~-----~~ 130 (213)
T cd03259 90 AENIAFGLKLRGVP--K--------A------------------------EIRARVRELLELVGLEGLLNRYP-----HE 130 (213)
T ss_pred HHHHHhHHHHcCCC--H--------H------------------------HHHHHHHHHHHHcCChhhhhcCh-----hh
Confidence 99998764321100 0 0 00123677889999987776655 46
Q ss_pred CchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEecCCeE
Q 001400 307 ISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQI 386 (1085)
Q Consensus 307 LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~~G~i 386 (1085)
|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++++.. +++|+.++|+.+++.+++|+|++|++|++
T Consensus 131 LSgG~~qrl~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~-~~tii~~sH~~~~~~~~~d~v~~l~~G~i 209 (213)
T cd03259 131 LSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQREL-GITTIYVTHDQEEALALADRIAVMNEGRI 209 (213)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHc-CCEEEEEecCHHHHHHhcCEEEEEECCEE
Confidence 99999999999999999999999999999999999999999999987533 45566688888999999999999999999
Q ss_pred EEec
Q 001400 387 VYQG 390 (1085)
Q Consensus 387 v~~G 390 (1085)
++.|
T Consensus 210 ~~~g 213 (213)
T cd03259 210 VQVG 213 (213)
T ss_pred EecC
Confidence 8765
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-36 Score=326.11 Aligned_cols=211 Identities=25% Similarity=0.361 Sum_probs=174.9
Q ss_pred cCCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCChhcccceEEEEccCCCCCCCCC
Q 001400 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLT 918 (1085)
Q Consensus 839 ~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gy~~Q~~~~~~~~t 918 (1085)
+++..+|+|+||++++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.+..... .+.++|++|++.+++..|
T Consensus 10 ~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~~~~~~~~~-~~~~~~~~q~~~~~~~~t 86 (223)
T TIGR03740 10 FGKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILR--PTSGEIIFDGHPWTRKD-LHKIGSLIESPPLYENLT 86 (223)
T ss_pred ECCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEeccccc-cccEEEEcCCCCccccCC
Confidence 345679999999999999999999999999999999999866 56899999998764322 357999999998888899
Q ss_pred HHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCC
Q 001400 919 VLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSG 998 (1085)
Q Consensus 919 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEPtsg 998 (1085)
++||+.+....+. .. ...+.++++.+++.+..+... ..||+|||||++|||||+.+|++|+|||||+|
T Consensus 87 ~~~~~~~~~~~~~---~~----~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~~rv~laral~~~p~llllDEP~~~ 154 (223)
T TIGR03740 87 ARENLKVHTTLLG---LP----DSRIDEVLNIVDLTNTGKKKA-----KQFSLGMKQRLGIAIALLNHPKLLILDEPTNG 154 (223)
T ss_pred HHHHHHHHHHHcC---CC----HHHHHHHHHHcCCcHHHhhhH-----hhCCHHHHHHHHHHHHHhcCCCEEEECCCccC
Confidence 9999987643321 11 234678889999987665543 47999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCCCchHHHHHHHHh
Q 001400 999 LDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGSKSCELIKYFEV 1067 (1085)
Q Consensus 999 LD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~~~~~~~~~~~~~ 1067 (1085)
||+.++..+++.|+++.++|+|||++||+++ ++.+.+|++++|++ |++++.|+..+ ...+-+.|..
T Consensus 155 LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-g~i~~~~~~~~-~~~~~~~~~~ 220 (223)
T TIGR03740 155 LDPIGIQELRELIRSFPEQGITVILSSHILS-EVQQLADHIGIISE-GVLGYQGKINK-SENLEKLFVE 220 (223)
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHhcCEEEEEeC-CEEEEecChhh-cccHHHHHHH
Confidence 9999999999999999777999999999986 46788999999985 78999888653 2334444443
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-36 Score=332.86 Aligned_cols=205 Identities=22% Similarity=0.312 Sum_probs=170.9
Q ss_pred CCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCCh----------------hcccce
Q 001400 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ----------------ETFARI 903 (1085)
Q Consensus 840 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~----------------~~~~~~ 903 (1085)
++..+|+|+||+|++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.++.. ..+++.
T Consensus 16 ~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (257)
T PRK10619 16 GEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEK--PSEGSIVVNGQTINLVRDKDGQLKVADKNQLRLLRTR 93 (257)
T ss_pred CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEcccccccccccccccchHHHHHhhc
Confidence 44679999999999999999999999999999999999876 468999999986531 234567
Q ss_pred EEEEccCCCCCCCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCccc-ccccCCCCCCCCCHHHHHHHHHHHH
Q 001400 904 SGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLS-GALIGLPGINGLSTEQRKRLTIAVE 982 (1085)
Q Consensus 904 ~gy~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~~~~~~LS~Gqrqrl~iA~a 982 (1085)
++|++|++.+++.+|++||+.+...... ........+.+.++++.+++.+.. +.. +..||+|||||++||||
T Consensus 94 i~~v~q~~~l~~~~sv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~~LS~G~~qrv~lara 166 (257)
T PRK10619 94 LTMVFQHFNLWSHMTVLENVMEAPIQVL--GLSKQEARERAVKYLAKVGIDERAQGKY-----PVHLSGGQQQRVSIARA 166 (257)
T ss_pred eEEEecCcccCCCCcHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHcCCChhhhhCC-----cccCCHHHHHHHHHHHH
Confidence 9999999999989999999987532111 112233455678899999987643 332 35799999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCC
Q 001400 983 LVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1085)
Q Consensus 983 L~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~ 1055 (1085)
|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ .+...||++++|++ |++++.|+..
T Consensus 167 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~ 237 (257)
T PRK10619 167 LAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG-FARHVSSHVIFLHQ-GKIEEEGAPE 237 (257)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEEC-CEEEEeCCHH
Confidence 99999999999999999999999999999999777999999999986 46677999999985 7888888753
|
|
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=334.09 Aligned_cols=209 Identities=22% Similarity=0.253 Sum_probs=171.1
Q ss_pred cCCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCChh---c-ccceEEEEccCCCCC
Q 001400 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE---T-FARISGYCEQNDIHS 914 (1085)
Q Consensus 839 ~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~---~-~~~~~gy~~Q~~~~~ 914 (1085)
+++..+|+|+||++++|++++|+|+||||||||+++|+|..+ +.+|+|.++|.++... . .+..++|++|++.++
T Consensus 15 ~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~ 92 (255)
T PRK11300 15 FGGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYK--PTGGTILLRGQHIEGLPGHQIARMGVVRTFQHVRLF 92 (255)
T ss_pred ECCEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcC--CCcceEEECCEECCCCCHHHHHhcCeEEeccCcccC
Confidence 345679999999999999999999999999999999999866 5689999999876421 1 234589999999999
Q ss_pred CCCCHHHHHHHhhhhcCC----------C--cccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHH
Q 001400 915 PGLTVLESLLFSAWLRLP----------S--EIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVE 982 (1085)
Q Consensus 915 ~~~tv~e~l~~~~~~~~~----------~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~a 982 (1085)
+.+|++||+.++...... . .....+....++++++.+++.+..+... ..||+|||||++||+|
T Consensus 93 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrv~la~a 167 (255)
T PRK11300 93 REMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQA-----GNLAYGQQRRLEIARC 167 (255)
T ss_pred CCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCCh-----hhCCHHHHHHHHHHHH
Confidence 999999999876421100 0 0011123345678888888876655543 5799999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCCC
Q 001400 983 LVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGS 1056 (1085)
Q Consensus 983 L~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~~ 1056 (1085)
|+.+|++|||||||+|||+.++..+.+.|++++++ |.|||++||+++ ++.+.||++++|++ |++++.|+..+
T Consensus 168 l~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~-g~i~~~~~~~~ 240 (255)
T PRK11300 168 MVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMK-LVMGISDRIYVVNQ-GTPLANGTPEE 240 (255)
T ss_pred HhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CeEEecCCHHH
Confidence 99999999999999999999999999999999765 899999999986 47788999999985 78898887643
|
|
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-36 Score=337.29 Aligned_cols=224 Identities=27% Similarity=0.361 Sum_probs=180.4
Q ss_pred eecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCC-------CCCceEEEEccCC-CC
Q 001400 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEF-------VPPRTSAYVSQQD-WQ 220 (1085)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~-------~~~~~~~yv~Q~d-~~ 220 (1085)
.+|+|+|++|++|++++|+||||||||||+++|+|.++|. +|+|+++|.++... ..++.++||+|++ ..
T Consensus 20 ~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~ 96 (288)
T PRK13643 20 RALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPT---EGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQ 96 (288)
T ss_pred cceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCC---CcEEEECCEECccccccccHHHHHhhEEEEecCcchh
Confidence 5999999999999999999999999999999999999876 99999999987421 1245799999986 23
Q ss_pred CCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCc-ccccccc
Q 001400 221 VAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLD-TCADTLV 299 (1085)
Q Consensus 221 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~v 299 (1085)
+...||.||+.|+....+... . +...++.++++.+||. ...++.
T Consensus 97 l~~~tv~~~l~~~~~~~~~~~----------~------------------------~~~~~~~~~l~~~~L~~~~~~~~- 141 (288)
T PRK13643 97 LFEETVLKDVAFGPQNFGIPK----------E------------------------KAEKIAAEKLEMVGLADEFWEKS- 141 (288)
T ss_pred cccchHHHHHHhHHHHcCCCH----------H------------------------HHHHHHHHHHHHcCCChhhccCC-
Confidence 444699999998754322100 0 0122477889999996 344543
Q ss_pred cCcccccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEE
Q 001400 300 GDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVI 379 (1085)
Q Consensus 300 g~~~~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii 379 (1085)
++.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.+. +.+|+.++|+.+++.++||+|+
T Consensus 142 ----~~~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~--g~til~vtHd~~~~~~~~dri~ 215 (288)
T PRK13643 142 ----PFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQS--GQTVVLVTHLMDDVADYADYVY 215 (288)
T ss_pred ----cccCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHC--CCEEEEEecCHHHHHHhCCEEE
Confidence 4579999999999999999999999999999999999999999999988653 4566668899999999999999
Q ss_pred EecCCeEEEecChhhHH---HHHHhCCCCCCCCCChhHHH
Q 001400 380 LLSEGQIVYQGPRVSVL---DFFASMGFSCPKRKNVADFL 416 (1085)
Q Consensus 380 ~L~~G~iv~~G~~~~~~---~~f~~~G~~~p~~~~~adfl 416 (1085)
+|++|+++++|+++++. ++++..|+.+|.....++.+
T Consensus 216 ~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 255 (288)
T PRK13643 216 LLEKGHIISCGTPSDVFQEVDFLKAHELGVPKATHFADQL 255 (288)
T ss_pred EEECCEEEEECCHHHHHcCHHHHHHcCCCCChHHHHHHHH
Confidence 99999999999998874 34556677776654444433
|
|
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=339.61 Aligned_cols=201 Identities=22% Similarity=0.343 Sum_probs=168.2
Q ss_pred eEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCCh-------hcccceEEEEccCC--C
Q 001400 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ-------ETFARISGYCEQND--I 912 (1085)
Q Consensus 842 ~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~-------~~~~~~~gy~~Q~~--~ 912 (1085)
..+|+||||+|++||++||+|+||||||||+++|+|... +..|+|.++|.++.. ..+++.+|||+|++ .
T Consensus 20 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~--p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~ 97 (286)
T PRK13646 20 HQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLK--PTTGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQ 97 (286)
T ss_pred cCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEECccccccchHHHHHhheEEEecChHhc
Confidence 469999999999999999999999999999999999876 468999999987632 23567899999986 3
Q ss_pred CCCCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCC-cccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEE
Q 001400 913 HSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELT-SLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVF 991 (1085)
Q Consensus 913 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~ill 991 (1085)
+++ .|+.||+.|+.... ........+.+.++++.+++. +..+.. +..||+|||||++|||||+.+|+|||
T Consensus 98 l~~-~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~~LSgGq~qrv~laraL~~~p~ill 168 (286)
T PRK13646 98 LFE-DTVEREIIFGPKNF---KMNLDEVKNYAHRLLMDLGFSRDVMSQS-----PFQMSGGQMRKIAIVSILAMNPDIIV 168 (286)
T ss_pred cch-hhHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHcCCChhhhhCC-----cccCCHHHHHHHHHHHHHHhCCCEEE
Confidence 444 59999998864322 123334455678899999986 455543 35799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHH-CCceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCC
Q 001400 992 MDEPTSGLDARAAAIVMRTVRNIVN-TGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1085)
Q Consensus 992 lDEPtsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~ 1055 (1085)
|||||+|||+.++..+.+.|+++.+ .|.|||++||+++ ++.+.+|++++|++ |++++.|+..
T Consensus 169 lDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~-~~~~~~dri~~l~~-G~i~~~g~~~ 231 (286)
T PRK13646 169 LDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMN-EVARYADEVIVMKE-GSIVSQTSPK 231 (286)
T ss_pred EECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEECCHH
Confidence 9999999999999999999999975 4899999999986 46788999999985 7899888754
|
|
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=328.58 Aligned_cols=200 Identities=25% Similarity=0.309 Sum_probs=162.0
Q ss_pred EEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCCh------hcccceEEEEccCC--CCC
Q 001400 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ------ETFARISGYCEQND--IHS 914 (1085)
Q Consensus 843 ~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~------~~~~~~~gy~~Q~~--~~~ 914 (1085)
.+|+|+||+|++||++||+|+||||||||+++|+|... +.+|+|.++|.++.. ..+++.+||++|++ .+.
T Consensus 19 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 96 (228)
T cd03257 19 KALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLK--PTSGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLN 96 (228)
T ss_pred eeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEccccchhhHHHhhccEEEEecCchhhcC
Confidence 69999999999999999999999999999999999866 568999999987643 23456899999998 456
Q ss_pred CCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCC-cccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q 001400 915 PGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELT-SLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMD 993 (1085)
Q Consensus 915 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlD 993 (1085)
+.+|++||+.+........ .........++++++.+++. ...+.. +..||+|||||++|||||+.+|++||||
T Consensus 97 ~~~tv~~nl~~~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LS~G~~qrv~laral~~~p~lllLD 170 (228)
T cd03257 97 PRMTIGEQIAEPLRIHGKL-SKKEARKEAVLLLLVGVGLPEEVLNRY-----PHELSGGQRQRVAIARALALNPKLLIAD 170 (228)
T ss_pred CcCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHHHHCCCChhHhhCC-----chhcCHHHHHHHHHHHHHhcCCCEEEec
Confidence 7899999998764332211 11111112235788888884 344433 3579999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHC-CceEEEEecCccHHHHHhcCEEEEEecCcEEEEec
Q 001400 994 EPTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAG 1052 (1085)
Q Consensus 994 EPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g 1052 (1085)
|||+|||+.++..+.+.|++++++ |+|||++||+++ .+...+|++++|++ |+++..|
T Consensus 171 EPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~-G~i~~~g 228 (228)
T cd03257 171 EPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLG-VVAKIADRVAVMYA-GKIVEEG 228 (228)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEeC-CEEEecC
Confidence 999999999999999999999765 899999999986 46668999999985 6777654
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=339.34 Aligned_cols=218 Identities=27% Similarity=0.397 Sum_probs=177.2
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCC-----CCceEEEEccCCC-CC
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV-----PPRTSAYVSQQDW-QV 221 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~-----~~~~~~yv~Q~d~-~~ 221 (1085)
+++|+|||++|++||+++|+||||||||||+++|+|.++|. +|+|.++|.++.... .++.++||+|++. .+
T Consensus 20 ~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~ 96 (287)
T PRK13637 20 KKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPT---SGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQL 96 (287)
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---ccEEEECCEECCCcCccHHHHhhceEEEecCchhcc
Confidence 46999999999999999999999999999999999999876 999999999876532 2467999999863 34
Q ss_pred CCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCc--ccccccc
Q 001400 222 AEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLD--TCADTLV 299 (1085)
Q Consensus 222 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~--~~~dt~v 299 (1085)
..+||+||+.|+....+.. + .+...+++++++.+||+ +..|+.
T Consensus 97 ~~~tv~e~l~~~~~~~~~~-~---------------------------------~~~~~~~~~~l~~~gL~~~~~~~~~- 141 (287)
T PRK13637 97 FEETIEKDIAFGPINLGLS-E---------------------------------EEIENRVKRAMNIVGLDYEDYKDKS- 141 (287)
T ss_pred ccccHHHHHHhHHHHCCCC-H---------------------------------HHHHHHHHHHHHHcCCCchhhccCC-
Confidence 4679999998864322110 0 00122478889999996 445544
Q ss_pred cCcccccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEE
Q 001400 300 GDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVI 379 (1085)
Q Consensus 300 g~~~~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii 379 (1085)
++.||||||||++||+||+.+|++|+|||||+|||+.++.++.+.|+++++.. +++|+.++|+.+++..+||+|+
T Consensus 142 ----~~~LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~-g~tvi~vtHd~~~~~~~~drv~ 216 (287)
T PRK13637 142 ----PFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEY-NMTIILVSHSMEDVAKLADRII 216 (287)
T ss_pred ----cccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEE
Confidence 45799999999999999999999999999999999999999999999987643 4566678899999999999999
Q ss_pred EecCCeEEEecChhhHHH---HHHhCCCCCCC
Q 001400 380 LLSEGQIVYQGPRVSVLD---FFASMGFSCPK 408 (1085)
Q Consensus 380 ~L~~G~iv~~G~~~~~~~---~f~~~G~~~p~ 408 (1085)
+|++|++++.|+++++.+ .+...|+.+|.
T Consensus 217 ~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~ 248 (287)
T PRK13637 217 VMNKGKCELQGTPREVFKEVETLESIGLAVPQ 248 (287)
T ss_pred EEECCEEEEECCHHHHHhCHHHHHHcCCCCCh
Confidence 999999999999988743 23345555544
|
|
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-36 Score=338.63 Aligned_cols=202 Identities=25% Similarity=0.319 Sum_probs=168.9
Q ss_pred eEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCCh-------hcccceEEEEccCCC-C
Q 001400 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ-------ETFARISGYCEQNDI-H 913 (1085)
Q Consensus 842 ~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~-------~~~~~~~gy~~Q~~~-~ 913 (1085)
+.+|+||||+|++||++||+|+||||||||+++|+|... +.+|+|.++|.++.. ...++.+||++|++. .
T Consensus 20 ~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~v~q~~~~~ 97 (287)
T PRK13641 20 KKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLK--PSSGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQ 97 (287)
T ss_pred ccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEECccccccchHHHHHhceEEEEeChhhh
Confidence 469999999999999999999999999999999999876 568999999987532 234567999999973 2
Q ss_pred CCCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCC-cccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q 001400 914 SPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELT-SLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFM 992 (1085)
Q Consensus 914 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illl 992 (1085)
+..+|+.||+.|+...+ ........+.++++++.+++. +..+... ..||+|||||++|||||+.+|++|||
T Consensus 98 ~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~-----~~LSgGq~qrl~laral~~~p~lLlL 169 (287)
T PRK13641 98 LFENTVLKDVEFGPKNF---GFSEDEAKEKALKWLKKVGLSEDLISKSP-----FELSGGQMRRVAIAGVMAYEPEILCL 169 (287)
T ss_pred hccchHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhHhhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 33579999998764322 122334445678999999996 5555543 57999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCC
Q 001400 993 DEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1085)
Q Consensus 993 DEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~ 1055 (1085)
||||+|||+.++..+.+.|+++.++|.|||++||+++ .+.+.||++++|++ |++++.|+..
T Consensus 170 DEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~-~~~~~~d~v~~l~~-G~i~~~g~~~ 230 (287)
T PRK13641 170 DEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMD-DVAEYADDVLVLEH-GKLIKHASPK 230 (287)
T ss_pred ECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCHH
Confidence 9999999999999999999999777999999999986 47788999999985 7888888754
|
|
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=327.45 Aligned_cols=204 Identities=29% Similarity=0.382 Sum_probs=171.8
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCC--CCCceEEEEccCCCCCCCCC
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEF--VPPRTSAYVSQQDWQVAEMT 225 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~--~~~~~~~yv~Q~d~~~~~lT 225 (1085)
+++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++... ..++.++|++|++.+++.+|
T Consensus 13 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~t 89 (220)
T cd03265 13 FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPT---SGRATVAGHDVVREPREVRRRIGIVFQDLSVDDELT 89 (220)
T ss_pred EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEecCcChHHHhhcEEEecCCccccccCc
Confidence 46999999999999999999999999999999999998776 99999999876432 12357999999998899999
Q ss_pred HHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCcccc
Q 001400 226 VRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLK 305 (1085)
Q Consensus 226 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 305 (1085)
|+||+.+.....+... .+....++++++.+||++..++.+ .
T Consensus 90 v~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-----~ 130 (220)
T cd03265 90 GWENLYIHARLYGVPG----------------------------------AERRERIDELLDFVGLLEAADRLV-----K 130 (220)
T ss_pred HHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCHHHhhCCh-----h
Confidence 9999988643321100 001224778899999987777665 4
Q ss_pred cCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEecCCe
Q 001400 306 GISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQ 385 (1085)
Q Consensus 306 ~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~~G~ 385 (1085)
.|||||||||+||+|++.+|++++|||||+|||+.++..+.+.|+++.+.. +++|+.++|+.+++.+++|++++|.+|+
T Consensus 131 ~LS~G~~qr~~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~-~~tvi~~tH~~~~~~~~~d~i~~l~~G~ 209 (220)
T cd03265 131 TYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEF-GMTILLTTHYMEEAEQLCDRVAIIDHGR 209 (220)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEeCCE
Confidence 699999999999999999999999999999999999999999999987643 4556668899999999999999999999
Q ss_pred EEEecChhh
Q 001400 386 IVYQGPRVS 394 (1085)
Q Consensus 386 iv~~G~~~~ 394 (1085)
+++.|++++
T Consensus 210 i~~~~~~~~ 218 (220)
T cd03265 210 IIAEGTPEE 218 (220)
T ss_pred EEEeCChHH
Confidence 999988765
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=332.34 Aligned_cols=196 Identities=22% Similarity=0.301 Sum_probs=166.8
Q ss_pred CCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCChhcccceEEEEccCCCCCCCCCH
Q 001400 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTV 919 (1085)
Q Consensus 840 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gy~~Q~~~~~~~~tv 919 (1085)
++..+|+|+||+|++||+++|+|+||||||||+++|+|... +.+|+|.++|.+.. ..++.++|++|++.+++..||
T Consensus 23 ~~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~--p~~G~i~~~g~~~~--~~~~~i~~v~q~~~l~~~~tv 98 (257)
T PRK11247 23 GERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLET--PSAGELLAGTAPLA--EAREDTRLMFQDARLLPWKKV 98 (257)
T ss_pred CCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEHH--HhhCceEEEecCccCCCCCcH
Confidence 34579999999999999999999999999999999999866 46899999987643 345679999999988888999
Q ss_pred HHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCC
Q 001400 920 LESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGL 999 (1085)
Q Consensus 920 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEPtsgL 999 (1085)
+||+.+... . .....+.++++.+++.+..+.. +..||||||||++|||+|+.+|++|||||||+||
T Consensus 99 ~enl~~~~~-----~----~~~~~~~~~l~~~gl~~~~~~~-----~~~LSgGqkqrl~laraL~~~p~lllLDEPt~~L 164 (257)
T PRK11247 99 IDNVGLGLK-----G----QWRDAALQALAAVGLADRANEW-----PAALSGGQKQRVALARALIHRPGLLLLDEPLGAL 164 (257)
T ss_pred HHHHHhccc-----c----hHHHHHHHHHHHcCChhHhcCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCC
Confidence 999987421 0 1124567889999997765554 3579999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHH-CCceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCC
Q 001400 1000 DARAAAIVMRTVRNIVN-TGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1085)
Q Consensus 1000 D~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~ 1055 (1085)
|+.++..+.+.|+++.+ .|.|||++||+++ .+.+.+|++++|++ |++++.++..
T Consensus 165 D~~~~~~l~~~L~~~~~~~~~tviivsHd~~-~~~~~~d~i~~l~~-G~i~~~~~~~ 219 (257)
T PRK11247 165 DALTRIEMQDLIESLWQQHGFTVLLVTHDVS-EAVAMADRVLLIEE-GKIGLDLTVD 219 (257)
T ss_pred CHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEeecccc
Confidence 99999999999999865 4899999999986 46778999999985 6888888653
|
|
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-36 Score=341.85 Aligned_cols=201 Identities=23% Similarity=0.318 Sum_probs=167.9
Q ss_pred eEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCCh-------------------hcccc
Q 001400 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ-------------------ETFAR 902 (1085)
Q Consensus 842 ~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~-------------------~~~~~ 902 (1085)
..+|+||||+|++||++||+|+||||||||+++|+|..+ +.+|+|.++|.++.. ...++
T Consensus 39 ~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~--p~~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (320)
T PRK13631 39 LVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIK--SKYGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRR 116 (320)
T ss_pred ccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCeEEECCEEcccccccccccccccccccchHHHHHh
Confidence 469999999999999999999999999999999999876 568999999976532 23567
Q ss_pred eEEEEccCC--CCCCCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCC-cccccccCCCCCCCCCHHHHHHHHH
Q 001400 903 ISGYCEQND--IHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELT-SLSGALIGLPGINGLSTEQRKRLTI 979 (1085)
Q Consensus 903 ~~gy~~Q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~~~~~LS~Gqrqrl~i 979 (1085)
.+|||+|++ .+++ .|++||+.|+.... .....+....+.++++.+++. +..+.. +.+||||||||++|
T Consensus 117 ~ig~v~Q~~~~~l~~-~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~~LSgGqkqRvai 187 (320)
T PRK13631 117 RVSMVFQFPEYQLFK-DTIEKDIMFGPVAL---GVKKSEAKKLAKFYLNKMGLDDSYLERS-----PFGLSGGQKRRVAI 187 (320)
T ss_pred cEEEEEECchhcccc-chHHHHHHhhHHhc---CCCHHHHHHHHHHHHHHcCCChhHhcCC-----cccCCHHHHHHHHH
Confidence 899999987 3454 59999998864322 122333445678899999986 444443 35799999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCC
Q 001400 980 AVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1085)
Q Consensus 980 A~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~ 1055 (1085)
||||+.+|+||||||||+|||+.++..+++.|+++.++|+|||++||+++ .+.+.||++++|++ |+++..|+..
T Consensus 188 AraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~-~~~~~adri~vl~~-G~i~~~g~~~ 261 (320)
T PRK13631 188 AGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTME-HVLEVADEVIVMDK-GKILKTGTPY 261 (320)
T ss_pred HHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEeCCHH
Confidence 99999999999999999999999999999999998777999999999986 46788999999985 7899988754
|
|
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-36 Score=325.33 Aligned_cols=195 Identities=27% Similarity=0.395 Sum_probs=162.4
Q ss_pred eEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCChh---c---cc-ceEEEEccCCCCC
Q 001400 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE---T---FA-RISGYCEQNDIHS 914 (1085)
Q Consensus 842 ~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~---~---~~-~~~gy~~Q~~~~~ 914 (1085)
..+|+|+||+|++|++++|+||||||||||+++|+|..+ +.+|+|.++|.++... . ++ +.++|++|++.++
T Consensus 18 ~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~ 95 (221)
T TIGR02211 18 TRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDN--PTSGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLL 95 (221)
T ss_pred eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEhhhcCHhHHHHHHHhcEEEEecccccC
Confidence 579999999999999999999999999999999999866 5689999999875421 1 22 5799999999888
Q ss_pred CCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Q 001400 915 PGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDE 994 (1085)
Q Consensus 915 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDE 994 (1085)
+..|++||+.+....+. .......+.+.++++.+++.+..+... ..||+|||||++|||+|+.+|+||||||
T Consensus 96 ~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~illlDE 167 (221)
T TIGR02211 96 PDFTALENVAMPLLIGK---KSVKEAKERAYEMLEKVGLEHRINHRP-----SELSGGERQRVAIARALVNQPSLVLADE 167 (221)
T ss_pred CCCcHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCCHHHHHHHHHHHHHhCCCCEEEEeC
Confidence 89999999987643321 122233455778999999976655543 5799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHH-CCceEEEEecCccHHHHHhcCEEEEEecCcEEE
Q 001400 995 PTSGLDARAAAIVMRTVRNIVN-TGRTIVCTIHQPSIDIFESFDELLFMKRGGELI 1049 (1085)
Q Consensus 995 PtsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~ 1049 (1085)
||+|||+.++..+.+.|+++++ .|.|||++||+++ .+ +.+|++++|++ |+++
T Consensus 168 Pt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~-~~-~~~d~v~~l~~-G~i~ 220 (221)
T TIGR02211 168 PTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLE-LA-KKLDRVLEMKD-GQLF 220 (221)
T ss_pred CCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HH-hhcCEEEEEeC-CEec
Confidence 9999999999999999999875 4899999999986 34 55899999985 5654
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=326.80 Aligned_cols=195 Identities=25% Similarity=0.364 Sum_probs=163.9
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCC------CCceEEEEccCCCCC
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV------PPRTSAYVSQQDWQV 221 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~------~~~~~~yv~Q~d~~~ 221 (1085)
+.+|+|+|+++++|++++|+|||||||||||++|+|.++|. +|+|.++|.++.... .++.++|++|++.++
T Consensus 16 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 92 (216)
T TIGR00960 16 QPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPT---RGKIRFNGQDLTRLRGREIPFLRRHIGMVFQDHRLL 92 (216)
T ss_pred eeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEehhhcChhHHHHHHHhceEEecCcccc
Confidence 35999999999999999999999999999999999998876 999999998775432 235799999999889
Q ss_pred CCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccC
Q 001400 222 AEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGD 301 (1085)
Q Consensus 222 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 301 (1085)
+.+||+||+.++.+..+... ......++++++.+||++..++.+
T Consensus 93 ~~~tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-- 136 (216)
T TIGR00960 93 SDRTVYDNVAFPLRIIGVPP----------------------------------RDANERVSAALEKVGLEGKAHALP-- 136 (216)
T ss_pred ccccHHHHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCChhhhhCCh--
Confidence 99999999988654321100 001224678899999987776654
Q ss_pred cccccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEe
Q 001400 302 EMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILL 381 (1085)
Q Consensus 302 ~~~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L 381 (1085)
..|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.+. +++|+.++|+.+++..++|++++|
T Consensus 137 ---~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~--~~tii~vsH~~~~~~~~~d~i~~l 211 (216)
T TIGR00960 137 ---MQLSGGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRR--GTTVLVATHDINLVETYRHRTLTL 211 (216)
T ss_pred ---hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHhCCEEEEE
Confidence 469999999999999999999999999999999999999999999998653 455666888889999999999999
Q ss_pred cCCeE
Q 001400 382 SEGQI 386 (1085)
Q Consensus 382 ~~G~i 386 (1085)
++|++
T Consensus 212 ~~G~i 216 (216)
T TIGR00960 212 SRGRL 216 (216)
T ss_pred eCCcC
Confidence 99975
|
|
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-36 Score=338.06 Aligned_cols=201 Identities=27% Similarity=0.369 Sum_probs=169.0
Q ss_pred EEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCCh-------hcccceEEEEccCC--CC
Q 001400 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ-------ETFARISGYCEQND--IH 913 (1085)
Q Consensus 843 ~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~-------~~~~~~~gy~~Q~~--~~ 913 (1085)
.+|+||||+|.+||++||+|+||||||||+++|+|... +.+|+|+++|.++.. ..+++.+||++|++ .+
T Consensus 20 ~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l 97 (288)
T PRK13643 20 RALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQ--PTEGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQL 97 (288)
T ss_pred cceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCC--CCCcEEEECCEECccccccccHHHHHhhEEEEecCcchhc
Confidence 59999999999999999999999999999999999876 568999999987631 23567899999987 34
Q ss_pred CCCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCC-cccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q 001400 914 SPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELT-SLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFM 992 (1085)
Q Consensus 914 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illl 992 (1085)
+ ..||.||+.|+.... .....+.++.+.++++.+++. .+.+.. +..||+|||||++|||+|+.+|+||||
T Consensus 98 ~-~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~~LSgGqkqrvaiA~aL~~~p~illL 168 (288)
T PRK13643 98 F-EETVLKDVAFGPQNF---GIPKEKAEKIAAEKLEMVGLADEFWEKS-----PFELSGGQMRRVAIAGILAMEPEVLVL 168 (288)
T ss_pred c-cchHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCChhhccCC-----cccCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 4 469999999875332 123344456678999999985 344443 357999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCCC
Q 001400 993 DEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGS 1056 (1085)
Q Consensus 993 DEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~~ 1056 (1085)
||||+|||+.++..+.+.|++++++|.|||++||+++ ++.+.||++++|++ |++++.|+..+
T Consensus 169 DEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~-~~~~~~dri~~l~~-G~i~~~g~~~~ 230 (288)
T PRK13643 169 DEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMD-DVADYADYVYLLEK-GHIISCGTPSD 230 (288)
T ss_pred ECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEECCHHH
Confidence 9999999999999999999999877999999999986 46788999999985 78999987643
|
|
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-36 Score=332.88 Aligned_cols=210 Identities=25% Similarity=0.370 Sum_probs=172.6
Q ss_pred ccCCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCCh---hcccceEEEEccCCCCC
Q 001400 838 LEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFARISGYCEQNDIHS 914 (1085)
Q Consensus 838 ~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gy~~Q~~~~~ 914 (1085)
.+++..+|+||||++++|++++|+|+||||||||+++|+|..+ +.+|+|.++|.++.. ..+++.++|++|++.++
T Consensus 11 ~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~ 88 (255)
T PRK11231 11 GYGTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLT--PQSGTVFLGDKPISMLSSRQLARRLALLPQHHLTP 88 (255)
T ss_pred EECCEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcC--CCCcEEEECCEEhHHCCHHHHhhheEEecccCCCC
Confidence 3455679999999999999999999999999999999999865 468999999986532 23456799999998888
Q ss_pred CCCCHHHHHHHhhhhcCC-CcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q 001400 915 PGLTVLESLLFSAWLRLP-SEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMD 993 (1085)
Q Consensus 915 ~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlD 993 (1085)
+.+|+.||+.++...... ...........++++++.+++.+..+... ..||+|||||++|||||+.+|++||||
T Consensus 89 ~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllD 163 (255)
T PRK11231 89 EGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRL-----TDLSGGQRQRAFLAMVLAQDTPVVLLD 163 (255)
T ss_pred CCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 889999999875311000 01111223455788899999876665543 579999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCCC
Q 001400 994 EPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGS 1056 (1085)
Q Consensus 994 EPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~~ 1056 (1085)
|||+|||+.++..+.+.|+++.++|+|||++||+++ ++.+.+|++++|++ |+++..|+..+
T Consensus 164 EP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~~ 224 (255)
T PRK11231 164 EPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLN-QASRYCDHLVVLAN-GHVMAQGTPEE 224 (255)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHhcCEEEEEEC-CeEEEEcCHHH
Confidence 999999999999999999998777999999999986 57788999999985 68888887654
|
|
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-36 Score=329.31 Aligned_cols=207 Identities=24% Similarity=0.325 Sum_probs=170.6
Q ss_pred cCCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCChh----cccceEEEEccCCCCC
Q 001400 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE----TFARISGYCEQNDIHS 914 (1085)
Q Consensus 839 ~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~----~~~~~~gy~~Q~~~~~ 914 (1085)
+++..+|+|+||+|++||+++|+|+||||||||+++|+|... +.+|+|.++|.++... ..++.++|++|++.++
T Consensus 12 ~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~ 89 (242)
T TIGR03411 12 FDGFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTR--PDEGSVLFGGTDLTGLPEHQIARAGIGRKFQKPTVF 89 (242)
T ss_pred cCCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCCeEEECCeecCCCCHHHHHhcCeeEeccccccC
Confidence 345679999999999999999999999999999999999865 4689999999875421 1345699999999999
Q ss_pred CCCCHHHHHHHhhhhcCC-----CcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCE
Q 001400 915 PGLTVLESLLFSAWLRLP-----SEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSI 989 (1085)
Q Consensus 915 ~~~tv~e~l~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~i 989 (1085)
+.+|++||+.+....... ...........++++++.+++.+..+... ..||+|||||++|||||+.+|++
T Consensus 90 ~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~Ge~qrv~laral~~~p~~ 164 (242)
T TIGR03411 90 ENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLA-----GLLSHGQKQWLEIGMLLMQDPKL 164 (242)
T ss_pred CCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHHHHHHHhcCCCE
Confidence 999999999875321100 00112233456788999999877655543 57999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCC
Q 001400 990 VFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1085)
Q Consensus 990 lllDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~ 1055 (1085)
|+|||||+|||+.++..+++.|+++.+ ++|||++||+++ ++.+.||++++|++ |+++..|+..
T Consensus 165 lllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~~-g~~~~~~~~~ 227 (242)
T TIGR03411 165 LLLDEPVAGMTDEETEKTAELLKSLAG-KHSVVVVEHDME-FVRSIADKVTVLHQ-GSVLAEGSLD 227 (242)
T ss_pred EEecCCccCCCHHHHHHHHHHHHHHhc-CCEEEEEECCHH-HHHHhCCEEEEEEC-CeEEeeCCHH
Confidence 999999999999999999999999865 799999999986 46778999999985 7888888754
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-36 Score=334.04 Aligned_cols=207 Identities=23% Similarity=0.320 Sum_probs=174.1
Q ss_pred ceeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCC-------CceEEEEccCCC
Q 001400 147 KLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP-------PRTSAYVSQQDW 219 (1085)
Q Consensus 147 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~-------~~~~~yv~Q~d~ 219 (1085)
.+.+|+|+|++|++|++++|+|||||||||||++|+|.++|. +|+|.++|.++..... ++.++|++|++.
T Consensus 36 ~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~---~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~~ 112 (269)
T cd03294 36 QTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPT---SGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFA 112 (269)
T ss_pred CceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEccccChhhhhhhhcCcEEEEecCcc
Confidence 357999999999999999999999999999999999999876 9999999988754321 357999999999
Q ss_pred CCCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccc
Q 001400 220 QVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLV 299 (1085)
Q Consensus 220 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~v 299 (1085)
+++.+||+||+.+.....+... ......++++++.+||++..++.+
T Consensus 113 ~~~~~tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~ 158 (269)
T cd03294 113 LLPHRTVLENVAFGLEVQGVPR----------------------------------AEREERAAEALELVGLEGWEHKYP 158 (269)
T ss_pred cCCCCcHHHHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCCHhHhhCCc
Confidence 8989999999988643321100 000123677899999987777665
Q ss_pred cCcccccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEE
Q 001400 300 GDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVI 379 (1085)
Q Consensus 300 g~~~~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii 379 (1085)
+ .|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++++.. +++|+.++|+.+++.+++|+++
T Consensus 159 ~-----~LS~Gq~qrv~lAral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~-g~tiii~tH~~~~~~~~~d~v~ 232 (269)
T cd03294 159 D-----ELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAEL-QKTIVFITHDLDEALRLGDRIA 232 (269)
T ss_pred c-----cCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhcCEEE
Confidence 4 699999999999999999999999999999999999999999999987543 4556667888899999999999
Q ss_pred EecCCeEEEecChhhHH
Q 001400 380 LLSEGQIVYQGPRVSVL 396 (1085)
Q Consensus 380 ~L~~G~iv~~G~~~~~~ 396 (1085)
+|++|++++.|+.+++.
T Consensus 233 ~l~~G~i~~~g~~~~~~ 249 (269)
T cd03294 233 IMKDGRLVQVGTPEEIL 249 (269)
T ss_pred EEECCEEEEeCCHHHHH
Confidence 99999999999987764
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-36 Score=330.16 Aligned_cols=202 Identities=21% Similarity=0.317 Sum_probs=167.4
Q ss_pred CCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCChh----cccceEEEEccCCCCCC
Q 001400 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE----TFARISGYCEQNDIHSP 915 (1085)
Q Consensus 840 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~----~~~~~~gy~~Q~~~~~~ 915 (1085)
++..+|+|+||+|++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.+.... ..++.++|++|++.+++
T Consensus 16 ~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~ 93 (237)
T PRK11614 16 GKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPR--ATSGRIVFDGKDITDWQTAKIMREAVAIVPEGRRVFS 93 (237)
T ss_pred CCceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC--CCCceEEECCEecCCCCHHHHHHhCEEEeccCcccCC
Confidence 44579999999999999999999999999999999999866 4689999999875431 24567999999998888
Q ss_pred CCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHc-CCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Q 001400 916 GLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELV-ELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDE 994 (1085)
Q Consensus 916 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDE 994 (1085)
..||.||+.+..... . .....+.++++++.+ ++.+..+.. +..||+|||||++|||||+.+|+||+|||
T Consensus 94 ~~tv~~~l~~~~~~~---~--~~~~~~~~~~~l~~~~~l~~~~~~~-----~~~LS~G~~qrl~la~al~~~p~illlDE 163 (237)
T PRK11614 94 RMTVEENLAMGGFFA---E--RDQFQERIKWVYELFPRLHERRIQR-----AGTMSGGEQQMLAIGRALMSQPRLLLLDE 163 (237)
T ss_pred CCcHHHHHHHhhhcc---C--hhHHHHHHHHHHHHHHHHHHHHhCc-----hhhCCHHHHHHHHHHHHHHhCCCEEEEcC
Confidence 899999998754211 1 112233456677766 355444332 35799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCC
Q 001400 995 PTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1085)
Q Consensus 995 PtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~ 1055 (1085)
||+|||+.++..+.+.|+++.++|+|||++||+++ ++.+.+|++++|++ |++++.|+..
T Consensus 164 Pt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~ 222 (237)
T PRK11614 164 PSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNAN-QALKLADRGYVLEN-GHVVLEDTGD 222 (237)
T ss_pred ccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH-HHHhhCCEEEEEeC-CEEEeeCCHH
Confidence 99999999999999999998877999999999986 57889999999985 7899998764
|
|
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-36 Score=330.21 Aligned_cols=205 Identities=27% Similarity=0.336 Sum_probs=168.6
Q ss_pred cCCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCC---eeeeEEEEcCccCCh-----hcccceEEEEccC
Q 001400 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGG---IIEGDIYISGYPKRQ-----ETFARISGYCEQN 910 (1085)
Q Consensus 839 ~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~---~~~G~i~i~g~~~~~-----~~~~~~~gy~~Q~ 910 (1085)
+++..+++|+||+|++||+++|+|+||||||||+++|+|...+. ..+|+|.++|.++.. ...++.++|++|+
T Consensus 11 ~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~ 90 (247)
T TIGR00972 11 YGEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQK 90 (247)
T ss_pred ECCeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHHHhheEEEecC
Confidence 34457999999999999999999999999999999999986521 128999999987642 2345679999999
Q ss_pred CCCCCCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCC----cccccccCCCCCCCCCHHHHHHHHHHHHHhcC
Q 001400 911 DIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELT----SLSGALIGLPGINGLSTEQRKRLTIAVELVAN 986 (1085)
Q Consensus 911 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~----~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~ 986 (1085)
+.+++ .|++||+.+....+. ........+.++++++.+++. +..+.. +..||+|||||++|||||+.+
T Consensus 91 ~~~~~-~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-----~~~LSgG~~qrv~laral~~~ 162 (247)
T TIGR00972 91 PNPFP-MSIYDNIAYGPRLHG--IKDKKELDEIVEESLKKAALWDEVKDRLHDS-----ALGLSGGQQQRLCIARALAVE 162 (247)
T ss_pred cccCC-CCHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCCcchhhHhhCC-----cccCCHHHHHHHHHHHHHhcC
Confidence 88888 999999987653321 112233445678899999986 333332 357999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCC
Q 001400 987 PSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1085)
Q Consensus 987 p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~ 1054 (1085)
|++|||||||+|||+.++..+++.|+++.+ ++|||++||+++ ++.+.+|++++|++ |++++.|+.
T Consensus 163 p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 227 (247)
T TIGR00972 163 PEVLLLDEPTSALDPIATGKIEELIQELKK-KYTIVIVTHNMQ-QAARISDRTAFFYD-GELVEYGPT 227 (247)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCeEEEEecCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 999999999999999999999999999876 589999999986 47788999999985 688888875
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-36 Score=341.04 Aligned_cols=206 Identities=30% Similarity=0.387 Sum_probs=174.2
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCC--CCceEEEEccCCCCCCCCC
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV--PPRTSAYVSQQDWQVAEMT 225 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~lT 225 (1085)
..+|+|+|++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+|
T Consensus 17 ~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~t 93 (303)
T TIGR01288 17 KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPD---RGKITVLGEPVPSRARLARVAIGVVPQFDNLDPEFT 93 (303)
T ss_pred eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECcccHHHHhhcEEEEeccccCCcCCc
Confidence 36999999999999999999999999999999999998876 999999998764321 2467999999998889999
Q ss_pred HHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCcccc
Q 001400 226 VRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLK 305 (1085)
Q Consensus 226 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 305 (1085)
|+||+.+.....+... . .....++.+++.+||++..++.++
T Consensus 94 v~e~l~~~~~~~~~~~----------~------------------------~~~~~~~~ll~~~~l~~~~~~~~~----- 134 (303)
T TIGR01288 94 VRENLLVFGRYFGMST----------R------------------------EIEAVIPSLLEFARLESKADVRVA----- 134 (303)
T ss_pred HHHHHHHHHHHcCCCH----------H------------------------HHHHHHHHHHHHCCChhHhcCchh-----
Confidence 9999986543221100 0 001236678899999888777664
Q ss_pred cCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEecCCe
Q 001400 306 GISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQ 385 (1085)
Q Consensus 306 ~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~~G~ 385 (1085)
.|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++++. +++|+.++|+.+++.++||+|++|++|+
T Consensus 135 ~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~--g~til~~sH~~~~~~~~~d~i~~l~~G~ 212 (303)
T TIGR01288 135 LLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLAR--GKTILLTTHFMEEAERLCDRLCVLESGR 212 (303)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhC--CCEEEEECCCHHHHHHhCCEEEEEECCE
Confidence 69999999999999999999999999999999999999999999998753 4566668899999999999999999999
Q ss_pred EEEecChhhHHH
Q 001400 386 IVYQGPRVSVLD 397 (1085)
Q Consensus 386 iv~~G~~~~~~~ 397 (1085)
+++.|+.+++..
T Consensus 213 i~~~g~~~~~~~ 224 (303)
T TIGR01288 213 KIAEGRPHALID 224 (303)
T ss_pred EEEEcCHHHHHh
Confidence 999999888753
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-36 Score=304.37 Aligned_cols=206 Identities=28% Similarity=0.465 Sum_probs=173.7
Q ss_pred eecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCCC---ceEEEEccCCCCCCCCC
Q 001400 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPP---RTSAYVSQQDWQVAEMT 225 (1085)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~~---~~~~yv~Q~d~~~~~lT 225 (1085)
.+|++||++++||||++|+||||||||||||+|+|.+.|+ +|++++||.+++.+.+. +.-+..+|+..+-+..|
T Consensus 15 ~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~---~G~v~~~g~~l~~~~~~~lA~~raVlpQ~s~laFpFt 91 (259)
T COG4559 15 RLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPD---SGEVTLNGVPLNSWPPEELARHRAVLPQNSSLAFPFT 91 (259)
T ss_pred eeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCC---CCeEeeCCcChhhCCHHHHHHHhhhcccCcccccceE
Confidence 5999999999999999999999999999999999999887 99999999999877543 56689999977766679
Q ss_pred HHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCcccc
Q 001400 226 VRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLK 305 (1085)
Q Consensus 226 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 305 (1085)
|+|-+.++..-.+.+.. |. +....++.+|...++.+.+... .+
T Consensus 92 v~eVV~mGr~p~~~g~~-----------------~~---------------e~~~i~~~ala~~d~~~la~R~-----y~ 134 (259)
T COG4559 92 VQEVVQMGRIPHRSGRE-----------------PE---------------EDERIAAQALAATDLSGLAGRD-----YR 134 (259)
T ss_pred HHHHHHhcccccccCCC-----------------ch---------------hhHHHHHHHHHHcChhhhhccc-----hh
Confidence 99999998654322211 00 1123477788888888776543 45
Q ss_pred cCchhhhhHHHHHHHHhC------CCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEE
Q 001400 306 GISGGQKKRLTTGELLVG------PARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVI 379 (1085)
Q Consensus 306 ~LSGGqkqRvsia~al~~------~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii 379 (1085)
.|||||||||.+||.|+. ++++||||||||+||...+..+++..|++++. +..|+.++|+.+-+..++|+|+
T Consensus 135 ~LSGGEqQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~--g~~V~~VLHDLNLAA~YaDriv 212 (259)
T COG4559 135 TLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLARE--GGAVLAVLHDLNLAAQYADRIV 212 (259)
T ss_pred hcCchHHHHHHHHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhc--CCcEEEEEccchHHHHhhheee
Confidence 799999999999999985 44699999999999999999999999999985 3556668899999999999999
Q ss_pred EecCCeEEEecChhhHH
Q 001400 380 LLSEGQIVYQGPRVSVL 396 (1085)
Q Consensus 380 ~L~~G~iv~~G~~~~~~ 396 (1085)
+|++||++..|++++++
T Consensus 213 ll~~Grv~a~g~p~~vl 229 (259)
T COG4559 213 LLHQGRVIASGSPQDVL 229 (259)
T ss_pred eeeCCeEeecCCHHHhc
Confidence 99999999999998886
|
|
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-37 Score=306.96 Aligned_cols=209 Identities=20% Similarity=0.344 Sum_probs=180.0
Q ss_pred ceeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCC----CceEEEEccCCCCCC
Q 001400 147 KLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP----PRTSAYVSQQDWQVA 222 (1085)
Q Consensus 147 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~----~~~~~yv~Q~d~~~~ 222 (1085)
++++++|||+.+++||+++++|||||||||...++.|+..|+ +|+|.++|.+++.+.. +.-+||+||++..|-
T Consensus 16 kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d---~G~i~ld~~diT~lPm~~RArlGigYLpQE~SIFr 92 (243)
T COG1137 16 KRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPD---SGKILLDDEDITKLPMHKRARLGIGYLPQEASIFR 92 (243)
T ss_pred CeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecC---CceEEECCcccccCChHHHhhcCcccccccchHhh
Confidence 457999999999999999999999999999999999999988 9999999999987654 246899999999999
Q ss_pred CCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCc
Q 001400 223 EMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDE 302 (1085)
Q Consensus 223 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 302 (1085)
.+||+|||.-....+....+ ..+.+.+.+.+|+.|.|.|+++..-
T Consensus 93 ~LtV~dNi~~vlE~~~~d~~--------------------------------~~~~~~~l~~LL~ef~i~hlr~~~a--- 137 (243)
T COG1137 93 KLTVEDNIMAVLEIREKDLK--------------------------------KAERKEELDALLEEFHITHLRDSKA--- 137 (243)
T ss_pred cCcHHHHHHHHHhhhhcchh--------------------------------HHHHHHHHHHHHHHhchHHHhcCcc---
Confidence 99999999866543321000 0011335789999999999998653
Q ss_pred ccccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEec
Q 001400 303 MLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLS 382 (1085)
Q Consensus 303 ~~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~ 382 (1085)
-.||||||+|+.|||||+.+|+.++||||++|+||-+..+|.+.++++... +.-|++.-|...|+..++||.++++
T Consensus 138 --~sLSGGERRR~EIARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~r--giGvLITDHNVREtL~i~dRaYIi~ 213 (243)
T COG1137 138 --YSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDR--GIGVLITDHNVRETLDICDRAYIIS 213 (243)
T ss_pred --cccccchHHHHHHHHHHhcCCCEEEecCCccCCCchhHHHHHHHHHHHHhC--CceEEEccccHHHHHhhhheEEEEe
Confidence 369999999999999999999999999999999999999999999999763 4445557799999999999999999
Q ss_pred CCeEEEecChhhHHH
Q 001400 383 EGQIVYQGPRVSVLD 397 (1085)
Q Consensus 383 ~G~iv~~G~~~~~~~ 397 (1085)
+|++..+|+++++.+
T Consensus 214 ~G~vla~G~p~ei~~ 228 (243)
T COG1137 214 DGKVLAEGSPEEIVN 228 (243)
T ss_pred cCeEEecCCHHHHhc
Confidence 999999999998863
|
|
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-36 Score=334.44 Aligned_cols=205 Identities=23% Similarity=0.320 Sum_probs=170.7
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCC---CCceEEEEccCCC-CCCC
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV---PPRTSAYVSQQDW-QVAE 223 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~---~~~~~~yv~Q~d~-~~~~ 223 (1085)
..+|+|+|++|++|++++|+||||||||||+++|+|.++|. +|+|.++|.++.... .++.++||+|++. .++.
T Consensus 20 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~ 96 (279)
T PRK13650 20 KYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAE---SGQIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVG 96 (279)
T ss_pred CeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEECCcCcHHHHHhhceEEEcChHHhccc
Confidence 35999999999999999999999999999999999999876 999999999875432 2357999999973 6778
Q ss_pred CCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCcc
Q 001400 224 MTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEM 303 (1085)
Q Consensus 224 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 303 (1085)
+||+|||.|+....+... .+...+++++++.+||++..+..+
T Consensus 97 ~tv~eni~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gL~~~~~~~~---- 138 (279)
T PRK13650 97 ATVEDDVAFGLENKGIPH----------------------------------EEMKERVNEALELVGMQDFKEREP---- 138 (279)
T ss_pred ccHHHHHHhhHHhCCCCH----------------------------------HHHHHHHHHHHHHCCCHhHhhCCc----
Confidence 899999988643221100 001224778899999987776654
Q ss_pred cccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEecC
Q 001400 304 LKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSE 383 (1085)
Q Consensus 304 ~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~~ 383 (1085)
..|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++++.. +++|+.++|+.+++ ..+|+|++|++
T Consensus 139 -~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~-g~tilivtH~~~~~-~~~dri~~l~~ 215 (279)
T PRK13650 139 -ARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDY-QMTVISITHDLDEV-ALSDRVLVMKN 215 (279)
T ss_pred -ccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEecCHHHH-HhCCEEEEEEC
Confidence 4699999999999999999999999999999999999999999999987643 45555577888887 58999999999
Q ss_pred CeEEEecChhhHH
Q 001400 384 GQIVYQGPRVSVL 396 (1085)
Q Consensus 384 G~iv~~G~~~~~~ 396 (1085)
|+++..|+++++.
T Consensus 216 G~i~~~g~~~~~~ 228 (279)
T PRK13650 216 GQVESTSTPRELF 228 (279)
T ss_pred CEEEEECCHHHHH
Confidence 9999999988765
|
|
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-36 Score=336.71 Aligned_cols=204 Identities=26% Similarity=0.353 Sum_probs=170.9
Q ss_pred CeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCC-----hhcccceEEEEccCCCC-C
Q 001400 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKR-----QETFARISGYCEQNDIH-S 914 (1085)
Q Consensus 841 ~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~-----~~~~~~~~gy~~Q~~~~-~ 914 (1085)
+..+|+||||+|++||++||+|+||||||||+++|+|..+ +.+|+|.++|.+.. ...+++.+||++|++.. .
T Consensus 18 ~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~--p~~G~i~i~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~ 95 (283)
T PRK13636 18 GTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILK--PSSGRILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQL 95 (283)
T ss_pred CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCccEEEECCEECCCCcchHHHHHhhEEEEecCcchhh
Confidence 3569999999999999999999999999999999999876 56899999998763 12356789999998742 3
Q ss_pred CCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Q 001400 915 PGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDE 994 (1085)
Q Consensus 915 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDE 994 (1085)
...|++||+.+..... ........+.++++++.+++.+..+... ..||+|||||++|||||+.+|+||+|||
T Consensus 96 ~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LS~G~~qrl~laraL~~~p~lLilDE 167 (283)
T PRK13636 96 FSASVYQDVSFGAVNL---KLPEDEVRKRVDNALKRTGIEHLKDKPT-----HCLSFGQKKRVAIAGVLVMEPKVLVLDE 167 (283)
T ss_pred ccccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHCCChhhhhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 4679999998764322 1223334456789999999987666543 5799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHC-CceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCCC
Q 001400 995 PTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGS 1056 (1085)
Q Consensus 995 PtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~~ 1056 (1085)
||+|||+.++..+++.|+++.++ |+|||++||+++ ++.+.||++++|++ |++++.|+..+
T Consensus 168 Pt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~-~~~~~~dri~~l~~-G~i~~~g~~~~ 228 (283)
T PRK13636 168 PTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDID-IVPLYCDNVFVMKE-GRVILQGNPKE 228 (283)
T ss_pred CccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEeCCHHH
Confidence 99999999999999999999765 899999999986 46678999999985 68999987643
|
|
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-36 Score=329.13 Aligned_cols=205 Identities=26% Similarity=0.346 Sum_probs=170.7
Q ss_pred cCCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCC---------hhcccceEEEEcc
Q 001400 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKR---------QETFARISGYCEQ 909 (1085)
Q Consensus 839 ~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~---------~~~~~~~~gy~~Q 909 (1085)
+++..+|+|+||++++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.++. ....++.++|++|
T Consensus 12 ~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q 89 (242)
T PRK11124 12 YGAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEM--PRSGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQ 89 (242)
T ss_pred ECCeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEecccccccchhhHHHHHhheEEEec
Confidence 344579999999999999999999999999999999999876 56899999998642 1234567999999
Q ss_pred CCCCCCCCCHHHHHHHhh-hhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCC
Q 001400 910 NDIHSPGLTVLESLLFSA-WLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPS 988 (1085)
Q Consensus 910 ~~~~~~~~tv~e~l~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~ 988 (1085)
++.+++.+|+.||+.+.. ... ..........+.++++.+++.+..+... ..||+|||||++|||||+.+|+
T Consensus 90 ~~~~~~~~tv~e~i~~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrv~laral~~~p~ 161 (242)
T PRK11124 90 QYNLWPHLTVQQNLIEAPCRVL---GLSKDQALARAEKLLERLRLKPYADRFP-----LHLSGGQQQRVAIARALMMEPQ 161 (242)
T ss_pred CccccCCCcHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCCHHHHHHHHHHHHHhcCCC
Confidence 999999999999997532 111 1122233456788899999876665543 5799999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCC
Q 001400 989 IVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1085)
Q Consensus 989 illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~ 1055 (1085)
+|+|||||+|||+.++..+.+.|+++.++|.|||++||+++ ++.+.+|++++|++ |++++.|+..
T Consensus 162 llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~-~~~~~~d~i~~l~~-g~i~~~~~~~ 226 (242)
T PRK11124 162 VLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVE-VARKTASRVVYMEN-GHIVEQGDAS 226 (242)
T ss_pred EEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEEEC-CEEEEeCCHH
Confidence 99999999999999999999999998777999999999986 46678999999985 7888888754
|
|
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-36 Score=346.92 Aligned_cols=205 Identities=24% Similarity=0.297 Sum_probs=174.1
Q ss_pred cCCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCChh---c----ccceEEEEccCC
Q 001400 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE---T----FARISGYCEQND 911 (1085)
Q Consensus 839 ~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~---~----~~~~~gy~~Q~~ 911 (1085)
++...+|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|.++... . .++.+||++|++
T Consensus 38 ~~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~--p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~ 115 (400)
T PRK10070 38 TGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIE--PTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSF 115 (400)
T ss_pred cCCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCC--CCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCC
Confidence 345568999999999999999999999999999999999876 5689999999876421 1 235799999999
Q ss_pred CCCCCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEE
Q 001400 912 IHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVF 991 (1085)
Q Consensus 912 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~ill 991 (1085)
.+++.+||+||+.|....+. .......+.++++++.+++.+..+... .+||||||||++|||||+.+|+|||
T Consensus 116 ~l~~~~Tv~enl~~~~~~~~---~~~~~~~~~~~e~L~~~gL~~~~~~~~-----~~LSgGq~QRv~LArAL~~~P~iLL 187 (400)
T PRK10070 116 ALMPHMTVLDNTAFGMELAG---INAEERREKALDALRQVGLENYAHSYP-----DELSGGMRQRVGLARALAINPDILL 187 (400)
T ss_pred cCCCCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCChhhhcCc-----ccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99999999999998754332 222334456788999999987766543 5799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHH-CCceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCC
Q 001400 992 MDEPTSGLDARAAAIVMRTVRNIVN-TGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1085)
Q Consensus 992 lDEPtsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~ 1055 (1085)
|||||+|||+.++..+++.|+++.+ .|+|||++||+++ ++.+.+|++++|++ |+++..|+..
T Consensus 188 LDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~-~~~~~~Dri~vL~~-G~i~~~g~~~ 250 (400)
T PRK10070 188 MDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLD-EAMRIGDRIAIMQN-GEVVQVGTPD 250 (400)
T ss_pred EECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHH-HHHHhCCEEEEEEC-CEEEecCCHH
Confidence 9999999999999999999999875 5899999999986 57788999999985 7898888654
|
|
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-36 Score=328.77 Aligned_cols=214 Identities=26% Similarity=0.370 Sum_probs=173.1
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCC----CceEEEEccCCCCCCC
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP----PRTSAYVSQQDWQVAE 223 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 223 (1085)
..+|+|+|++|++|++++|+|||||||||||++|+|.++|. +|+|.++|.++..... ++.++|++|++.+++.
T Consensus 13 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~ 89 (236)
T cd03219 13 LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPT---SGSVLFDGEDITGLPPHEIARLGIGRTFQIPRLFPE 89 (236)
T ss_pred EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCC---CceEEECCEECCCCCHHHHHhcCEEEEecccccccC
Confidence 46999999999999999999999999999999999998876 9999999998765432 3469999999998999
Q ss_pred CCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCcc
Q 001400 224 MTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEM 303 (1085)
Q Consensus 224 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 303 (1085)
+||+||+.+.....+...... .. . ... .......++++++.+||++..++.+
T Consensus 90 ~tv~~~l~~~~~~~~~~~~~~----~~------~-~~~-------------~~~~~~~~~~~l~~~~l~~~~~~~~---- 141 (236)
T cd03219 90 LTVLENVMVAAQARTGSGLLL----AR------A-RRE-------------EREARERAEELLERVGLADLADRPA---- 141 (236)
T ss_pred CCHHHHHHHHHhhcccccccc----cc------c-ccc-------------HHHHHHHHHHHHHHcCccchhhCCh----
Confidence 999999988654321100000 00 0 000 0011234778899999987666554
Q ss_pred cccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEecC
Q 001400 304 LKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSE 383 (1085)
Q Consensus 304 ~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~~ 383 (1085)
+.|||||||||+||+||+.+|++++|||||+|||..++..+.+.|+++++ . +++|+.++|+.+++.+++|++++|++
T Consensus 142 -~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~-~~tii~vsH~~~~~~~~~d~i~~l~~ 218 (236)
T cd03219 142 -GELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRE-R-GITVLLVEHDMDVVMSLADRVTVLDQ 218 (236)
T ss_pred -hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-C-CCEEEEEecCHHHHHHhCCEEEEEeC
Confidence 46999999999999999999999999999999999999999999999875 3 44566688889999999999999999
Q ss_pred CeEEEecChhhH
Q 001400 384 GQIVYQGPRVSV 395 (1085)
Q Consensus 384 G~iv~~G~~~~~ 395 (1085)
|++++.|+++++
T Consensus 219 G~i~~~~~~~~~ 230 (236)
T cd03219 219 GRVIAEGTPDEV 230 (236)
T ss_pred CEEEeecCHHHh
Confidence 999999988765
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-36 Score=330.89 Aligned_cols=208 Identities=26% Similarity=0.304 Sum_probs=167.2
Q ss_pred CCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCC---CeeeeEEEEcCccCCh-----hcccceEEEEccCC
Q 001400 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTG---GIIEGDIYISGYPKRQ-----ETFARISGYCEQND 911 (1085)
Q Consensus 840 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~---~~~~G~i~i~g~~~~~-----~~~~~~~gy~~Q~~ 911 (1085)
++..+|+|+||+|++||++||+|+||||||||+++|+|..++ .+.+|+|.++|.++.. ..+++.+||++|++
T Consensus 23 ~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~ 102 (258)
T PRK14268 23 GEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKP 102 (258)
T ss_pred CCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHHHHhhhEEEEecCC
Confidence 445799999999999999999999999999999999997642 1358999999987532 23456799999998
Q ss_pred CCCCCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEE
Q 001400 912 IHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVF 991 (1085)
Q Consensus 912 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~ill 991 (1085)
.+++ .|++||+.|....+. .......+.++++++.+++.+........ .+..||+|||||++|||||+.+|+|||
T Consensus 103 ~~~~-~tv~enl~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-~~~~LSgG~~qrv~laral~~~p~lll 177 (258)
T PRK14268 103 NPFP-MSIYDNVAYGPRIHG---ANKKDLDGVVENALRSAALWDETSDRLKS-PALSLSGGQQQRLCIARTLAVKPKIIL 177 (258)
T ss_pred ccCc-ccHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCCcchhhhhcC-ChhhCCHHHHHHHHHHHHHHcCCCEEE
Confidence 8877 899999988643221 12233345578889988874321111111 235799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCC
Q 001400 992 MDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1085)
Q Consensus 992 lDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~ 1055 (1085)
|||||+|||+.++..+++.|+++. +|+|||++||+++ ++.+.||++++|++ |++++.|+..
T Consensus 178 lDEPt~~LD~~~~~~l~~~l~~l~-~~~tiiivsH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~ 238 (258)
T PRK14268 178 FDEPTSALDPISTARIEDLIMNLK-KDYTIVIVTHNMQ-QAARISDYTGFFLM-GELIEFGQTR 238 (258)
T ss_pred EeCCCcccCHHHHHHHHHHHHHHh-hCCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEeCCHH
Confidence 999999999999999999999986 4899999999986 46678999999984 7899988753
|
|
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-36 Score=330.42 Aligned_cols=205 Identities=24% Similarity=0.319 Sum_probs=171.5
Q ss_pred CCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCCh----------------hcccce
Q 001400 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ----------------ETFARI 903 (1085)
Q Consensus 840 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~----------------~~~~~~ 903 (1085)
++..+|+||||+|++||+++|+|+||||||||+++|+|... +.+|+|.++|.++.. ..+++.
T Consensus 11 ~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~ 88 (252)
T TIGR03005 11 GILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEP--IDEGQIQVEGEQLYHMPGRNGPLVPADEKHLRQMRNK 88 (252)
T ss_pred CCeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEccccccccccccccchhHHHHHhhC
Confidence 44579999999999999999999999999999999999876 468999999986532 134667
Q ss_pred EEEEccCCCCCCCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHH
Q 001400 904 SGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVEL 983 (1085)
Q Consensus 904 ~gy~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL 983 (1085)
++|++|++.+++..|+.||+.+..... .........+.++++++.+++.+..+.. +..||+|||||++|||||
T Consensus 89 i~~v~q~~~~~~~~tv~~nl~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LS~G~~qrv~laral 161 (252)
T TIGR03005 89 IGMVFQSFNLFPHKTVLDNVTEAPVLV--LGMARAEAEKRAMELLDMVGLADKADHM-----PAQLSGGQQQRVAIARAL 161 (252)
T ss_pred eEEEecCcccCCCCcHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHcCChhHhhcC-----hhhcCHHHHHHHHHHHHH
Confidence 999999999889999999998753211 1122233445678899999987665543 257999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCC
Q 001400 984 VANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1085)
Q Consensus 984 ~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~ 1055 (1085)
+.+|++|||||||+|||+.++..+.+.|+++.++ |.|||++||+++ ++...+|++++|++ |++++.|+..
T Consensus 162 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~-G~i~~~g~~~ 232 (252)
T TIGR03005 162 AMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMG-FAREFADRVCFFDK-GRIVEQGKPD 232 (252)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHhcCEEEEEEC-CEEEEeCCHH
Confidence 9999999999999999999999999999998764 899999999986 46678999999985 7898888754
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-36 Score=335.98 Aligned_cols=201 Identities=25% Similarity=0.325 Sum_probs=170.5
Q ss_pred eEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCCh---hcccceEEEEccCCC-CCCCC
Q 001400 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFARISGYCEQNDI-HSPGL 917 (1085)
Q Consensus 842 ~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gy~~Q~~~-~~~~~ 917 (1085)
..+|+||||+|++||++||+|+||||||||+++|+|... +.+|+|.++|.++.. ...++.+||++|++. .++..
T Consensus 20 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~ 97 (279)
T PRK13650 20 KYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLE--AESGQIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGA 97 (279)
T ss_pred CeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEECCcCcHHHHHhhceEEEcChHHhcccc
Confidence 459999999999999999999999999999999999876 568999999987642 335668999999974 56778
Q ss_pred CHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCC
Q 001400 918 TVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTS 997 (1085)
Q Consensus 918 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEPts 997 (1085)
||+||+.|+.... .....+..+.++++++.+++.+..+... ..||+|||||++|||||+.+|+||+|||||+
T Consensus 98 tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSgGq~qrv~lAral~~~p~lLlLDEPt~ 169 (279)
T PRK13650 98 TVEDDVAFGLENK---GIPHEEMKERVNEALELVGMQDFKEREP-----ARLSGGQKQRVAIAGAVAMRPKIIILDEATS 169 (279)
T ss_pred cHHHHHHhhHHhC---CCCHHHHHHHHHHHHHHCCCHhHhhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEECCcc
Confidence 9999998864322 2233444566889999999987666543 5799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHC-CceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCC
Q 001400 998 GLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1085)
Q Consensus 998 gLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~ 1055 (1085)
|||+.++..+++.|++++++ |+|||++||+++ .+ ..||++++|++ |+++..|+..
T Consensus 170 ~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~-~~-~~~dri~~l~~-G~i~~~g~~~ 225 (279)
T PRK13650 170 MLDPEGRLELIKTIKGIRDDYQMTVISITHDLD-EV-ALSDRVLVMKN-GQVESTSTPR 225 (279)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEEC-CEEEEECCHH
Confidence 99999999999999999865 999999999986 34 67999999975 7899888754
|
|
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-36 Score=328.25 Aligned_cols=210 Identities=21% Similarity=0.284 Sum_probs=167.6
Q ss_pred cCCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCCh---hcc-cceEEEEccCCCCC
Q 001400 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETF-ARISGYCEQNDIHS 914 (1085)
Q Consensus 839 ~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~---~~~-~~~~gy~~Q~~~~~ 914 (1085)
+++..+|+|+||+|++||+++|+|+||||||||+++|+|.....+.+|+|.++|.+... ... +..++|++|++.++
T Consensus 10 ~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~ 89 (243)
T TIGR01978 10 VEDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGLFLAFQYPEEI 89 (243)
T ss_pred ECCEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccceEeeecccccc
Confidence 34567999999999999999999999999999999999974111568999999987543 122 33489999999999
Q ss_pred CCCCHHHHHHHhhhhcCCC----cccHHHHHHHHHHHHHHcCCC-cccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCE
Q 001400 915 PGLTVLESLLFSAWLRLPS----EIELETQRAFVEEVMELVELT-SLSGALIGLPGINGLSTEQRKRLTIAVELVANPSI 989 (1085)
Q Consensus 915 ~~~tv~e~l~~~~~~~~~~----~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~i 989 (1085)
+.+|++|++.+........ ........+.++++++.+++. ...+.... ..||+|||||++|||||+.+|++
T Consensus 90 ~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~----~~LS~G~~qrl~la~al~~~p~l 165 (243)
T TIGR01978 90 PGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVN----EGFSGGEKKRNEILQMALLEPKL 165 (243)
T ss_pred CCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccc----cCcCHHHHHHHHHHHHHhcCCCE
Confidence 9999999998754321110 011222345678889999986 34443321 24999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHh-cCEEEEEecCcEEEEecCC
Q 001400 990 VFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFES-FDELLFMKRGGELIYAGPL 1054 (1085)
Q Consensus 990 lllDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~-~d~il~l~~gG~~~~~g~~ 1054 (1085)
|||||||+|||+.++..+.+.|+++.++|.|||++||+++ .+... +|++++|++ |++++.|+.
T Consensus 166 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~-~~~~~~~d~i~~l~~-G~i~~~g~~ 229 (243)
T TIGR01978 166 AILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQR-LLNYIKPDYVHVLLD-GRIVKSGDV 229 (243)
T ss_pred EEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHH-HHHhhcCCeEEEEeC-CEEEEecCH
Confidence 9999999999999999999999999777899999999986 35566 799999985 788888764
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-36 Score=340.09 Aligned_cols=205 Identities=22% Similarity=0.274 Sum_probs=171.5
Q ss_pred CeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCCh------hcccceEEEEccCC--C
Q 001400 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ------ETFARISGYCEQND--I 912 (1085)
Q Consensus 841 ~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~------~~~~~~~gy~~Q~~--~ 912 (1085)
...+|+||||+|++||++||+|+||||||||+++|+|... +.+|+|.++|.++.. ..+++.++|++|++ .
T Consensus 33 ~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~--p~~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~ 110 (331)
T PRK15079 33 TLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVK--ATDGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLAS 110 (331)
T ss_pred ceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCC--CCCcEEEECCEECCcCCHHHHHHHhCceEEEecCchhh
Confidence 3579999999999999999999999999999999999876 468999999987642 12456799999997 5
Q ss_pred CCCCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCC-cccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEE
Q 001400 913 HSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELT-SLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVF 991 (1085)
Q Consensus 913 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~ill 991 (1085)
++|.+|+.||+.+......+ .....+.++.+.++++.+++. ...+.. +.+||||||||++|||||+.+|++||
T Consensus 111 l~p~~tv~~~i~~~l~~~~~-~~~~~~~~~~~~~~l~~vgl~~~~~~~~-----p~~LSgG~~QRv~iArAL~~~P~lli 184 (331)
T PRK15079 111 LNPRMTIGEIIAEPLRTYHP-KLSRQEVKDRVKAMMLKVGLLPNLINRY-----PHEFSGGQCQRIGIARALILEPKLII 184 (331)
T ss_pred cCCCCCHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHHcCCChHHhcCC-----cccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 78899999999876433211 123344556778999999984 334443 35899999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHC-CceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCC
Q 001400 992 MDEPTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1085)
Q Consensus 992 lDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~ 1055 (1085)
+||||+|||+.++..+++.|+++.++ |.|||+||||++ .+.+.+|++++|.+ |++++.|+..
T Consensus 185 lDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~-~~~~~~dri~vl~~-G~ive~g~~~ 247 (331)
T PRK15079 185 CDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLA-VVKHISDRVLVMYL-GHAVELGTYD 247 (331)
T ss_pred EeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcCHH
Confidence 99999999999999999999999764 999999999986 46678999999985 7999998754
|
|
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-36 Score=328.88 Aligned_cols=212 Identities=24% Similarity=0.288 Sum_probs=169.9
Q ss_pred cCCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCC---eeeeEEEEcCccCCh---hcccceEEEEccCCC
Q 001400 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGG---IIEGDIYISGYPKRQ---ETFARISGYCEQNDI 912 (1085)
Q Consensus 839 ~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~---~~~G~i~i~g~~~~~---~~~~~~~gy~~Q~~~ 912 (1085)
+++..+|+|+||+|++||+++|+|+||||||||+++|+|...+. +.+|+|.++|.++.. ..+++.+||++|++.
T Consensus 13 ~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~ 92 (250)
T PRK14247 13 FGQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRRRVQMVFQIPN 92 (250)
T ss_pred ECCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhccEEEEeccCc
Confidence 34457999999999999999999999999999999999976421 368999999987642 345667999999998
Q ss_pred CCCCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q 001400 913 HSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFM 992 (1085)
Q Consensus 913 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illl 992 (1085)
+++.+|+.||+.+....+... ....+..+.++++++.+++.+....... ..+.+||||||||++|||||+.+|+||+|
T Consensus 93 ~~~~~tv~enl~~~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~~LSgG~~qrv~laral~~~p~lllL 170 (250)
T PRK14247 93 PIPNLSIFENVALGLKLNRLV-KSKKELQERVRWALEKAQLWDEVKDRLD-APAGKLSGGQQQRLCIARALAFQPEVLLA 170 (250)
T ss_pred cCCCCcHHHHHHHHHHhcccc-CCHHHHHHHHHHHHHHcCCCcchhhhhc-CCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 888999999998764322110 1223334567889999988542111111 11357999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCC
Q 001400 993 DEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1085)
Q Consensus 993 DEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~ 1055 (1085)
||||+|||+.++..+.+.|+++. +|+|||++||+++ .+.+.+|++++|++ |+++..|+..
T Consensus 171 DEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~g~~~ 230 (250)
T PRK14247 171 DEPTANLDPENTAKIESLFLELK-KDMTIVLVTHFPQ-QAARISDYVAFLYK-GQIVEWGPTR 230 (250)
T ss_pred cCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCHH-HHHHhcCEEEEEEC-CeEEEECCHH
Confidence 99999999999999999999985 4899999999986 46778999999985 7888888754
|
|
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-36 Score=330.68 Aligned_cols=205 Identities=26% Similarity=0.390 Sum_probs=170.8
Q ss_pred cCCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCCh---hcccceEEEEccCCCCCC
Q 001400 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFARISGYCEQNDIHSP 915 (1085)
Q Consensus 839 ~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gy~~Q~~~~~~ 915 (1085)
+++..+|+|+||+|++|++++|+|+||||||||+++|+|... +.+|+|.++|.+... ..+++.++|++|++.+++
T Consensus 12 ~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~ 89 (258)
T PRK13548 12 LGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELS--PDSGEVRLNGRPLADWSPAELARRRAVLPQHSSLSF 89 (258)
T ss_pred eCCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCEEcccCCHHHhhhheEEEccCCcCCC
Confidence 345679999999999999999999999999999999999865 568999999986532 234567999999988878
Q ss_pred CCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHh------cCCCE
Q 001400 916 GLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELV------ANPSI 989 (1085)
Q Consensus 916 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~------~~p~i 989 (1085)
.+|++||+.+...... .........++++++.+++.+..+... ..||||||||++|||||+ .+|++
T Consensus 90 ~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGe~qrv~la~al~~~~~~~~~p~l 161 (258)
T PRK13548 90 PFTVEEVVAMGRAPHG---LSRAEDDALVAAALAQVDLAHLAGRDY-----PQLSGGEQQRVQLARVLAQLWEPDGPPRW 161 (258)
T ss_pred CCCHHHHHHhhhcccC---CCcHHHHHHHHHHHHHcCCHhHhcCCc-----ccCCHHHHHHHHHHHHHhcccccCCCCCE
Confidence 8999999987532111 111223345788999999977665543 579999999999999999 59999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHH-HCCceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCC
Q 001400 990 VFMDEPTSGLDARAAAIVMRTVRNIV-NTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1085)
Q Consensus 990 lllDEPtsgLD~~~~~~i~~~l~~~~-~~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~ 1055 (1085)
|+|||||+|||+.++..+.+.|+++. ++|.|||++||+++ .+...||++++|++ |++++.|+..
T Consensus 162 llLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~ 226 (258)
T PRK13548 162 LLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLN-LAARYADRIVLLHQ-GRLVADGTPA 226 (258)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhcCEEEEEEC-CEEEeeCCHH
Confidence 99999999999999999999999987 57999999999986 46778999999985 6888888754
|
|
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-36 Score=324.45 Aligned_cols=195 Identities=25% Similarity=0.383 Sum_probs=162.4
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCC-------CCceEEEEccCCCC
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV-------PPRTSAYVSQQDWQ 220 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~-------~~~~~~yv~Q~d~~ 220 (1085)
+.+|+|+|+++++|++++|+|||||||||||++|+|.++|. +|+|.++|.++.... .++.++|++|++.+
T Consensus 17 ~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~ 93 (218)
T cd03255 17 VQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPT---SGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNL 93 (218)
T ss_pred eeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCC---ceeEEECCEehhhcchhHHHHHHhhcEEEEeecccc
Confidence 46999999999999999999999999999999999998876 999999998875432 13579999999988
Q ss_pred CCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCccccccccc
Q 001400 221 VAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVG 300 (1085)
Q Consensus 221 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 300 (1085)
++.+||+||+.++....+... ......++++++.+||++..++.+
T Consensus 94 ~~~~tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~- 138 (218)
T cd03255 94 LPDLTALENVELPLLLAGVPK----------------------------------KERRERAEELLERVGLGDRLNHYP- 138 (218)
T ss_pred CCCCcHHHHHHHHHhhcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhhcCh-
Confidence 999999999988654321100 000123678899999987666554
Q ss_pred CcccccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEE
Q 001400 301 DEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVIL 380 (1085)
Q Consensus 301 ~~~~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~ 380 (1085)
+.|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++++.. +++|+.++|+.+++. ++|++++
T Consensus 139 ----~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~-~~tii~~sH~~~~~~-~~d~v~~ 212 (218)
T cd03255 139 ----SELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEA-GTTIVVVTHDPELAE-YADRIIE 212 (218)
T ss_pred ----hhcCHHHHHHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhc-CCeEEEEECCHHHHh-hhcEEEE
Confidence 4699999999999999999999999999999999999999999999987533 445666778888876 9999999
Q ss_pred ecCCeE
Q 001400 381 LSEGQI 386 (1085)
Q Consensus 381 L~~G~i 386 (1085)
|++|++
T Consensus 213 l~~G~i 218 (218)
T cd03255 213 LRDGKI 218 (218)
T ss_pred eeCCcC
Confidence 999974
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-36 Score=326.71 Aligned_cols=204 Identities=21% Similarity=0.342 Sum_probs=171.6
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCC----CceEEEEccCCCCCCC
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP----PRTSAYVSQQDWQVAE 223 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 223 (1085)
+.+|+|+|+++++|++++|+|||||||||||++|+|.++|. +|+|.++|.++..... ++.++|++|++.+++.
T Consensus 13 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 89 (232)
T cd03218 13 RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPD---SGKILLDGQDITKLPMHKRARLGIGYLPQEASIFRK 89 (232)
T ss_pred EEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEecccCCHhHHHhccEEEecCCcccccc
Confidence 46999999999999999999999999999999999998876 9999999987754321 2469999999988999
Q ss_pred CCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCcc
Q 001400 224 MTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEM 303 (1085)
Q Consensus 224 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 303 (1085)
+||+||+.+.....+... ......++.+++.+||++..++.+
T Consensus 90 ~tv~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~---- 131 (232)
T cd03218 90 LTVEENILAVLEIRGLSK----------------------------------KEREEKLEELLEEFHITHLRKSKA---- 131 (232)
T ss_pred CcHHHHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCChhhhhCCh----
Confidence 999999987543221000 001124678899999987766654
Q ss_pred cccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEecC
Q 001400 304 LKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSE 383 (1085)
Q Consensus 304 ~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~~ 383 (1085)
..|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++++. +++|+.++|+.+++.+++|++++|++
T Consensus 132 -~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~--~~tii~~sH~~~~~~~~~d~i~~l~~ 208 (232)
T cd03218 132 -SSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDR--GIGVLITDHNVRETLSITDRAYIIYE 208 (232)
T ss_pred -hhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 469999999999999999999999999999999999999999999988752 45566688888899999999999999
Q ss_pred CeEEEecChhhH
Q 001400 384 GQIVYQGPRVSV 395 (1085)
Q Consensus 384 G~iv~~G~~~~~ 395 (1085)
|++++.|+.+++
T Consensus 209 G~i~~~~~~~~~ 220 (232)
T cd03218 209 GKVLAEGTPEEI 220 (232)
T ss_pred CeEEEEeCHHHh
Confidence 999999988765
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-36 Score=321.89 Aligned_cols=194 Identities=27% Similarity=0.379 Sum_probs=162.4
Q ss_pred eeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCChh-cccceEEEEccCCCCCCCCCHHHHHHH
Q 001400 847 NVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE-TFARISGYCEQNDIHSPGLTVLESLLF 925 (1085)
Q Consensus 847 ~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~-~~~~~~gy~~Q~~~~~~~~tv~e~l~~ 925 (1085)
|+||+|++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.++... ..++.+||++|++.+++.+|++||+.+
T Consensus 16 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~--~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~ 93 (211)
T cd03298 16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFET--PQSGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVGL 93 (211)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcCcCCHhHccEEEEecccccCCCCcHHHHHhc
Confidence 9999999999999999999999999999999876 5689999999876431 234679999999998899999999987
Q ss_pred hhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHH
Q 001400 926 SAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAA 1005 (1085)
Q Consensus 926 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEPtsgLD~~~~~ 1005 (1085)
....+. .. ....++.++++++.+++.+..+... ..||+|||||++|||||+.+|++|+|||||+|||+.++.
T Consensus 94 ~~~~~~--~~-~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~ia~al~~~p~llllDEP~~~LD~~~~~ 165 (211)
T cd03298 94 GLSPGL--KL-TAEDRQAIEVALARVGLAGLEKRLP-----GELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRA 165 (211)
T ss_pred cccccc--Cc-cHHHHHHHHHHHHHcCCHHHHhCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHH
Confidence 532111 11 1223456788999999977665543 479999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH-CCceEEEEecCccHHHHHhcCEEEEEecCcEEEEec
Q 001400 1006 IVMRTVRNIVN-TGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAG 1052 (1085)
Q Consensus 1006 ~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g 1052 (1085)
.+++.|+++++ .|.|||++||+++ ++.+.+|++++|++ |+++..|
T Consensus 166 ~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~-G~i~~~~ 211 (211)
T cd03298 166 EMLDLVLDLHAETKMTVLMVTHQPE-DAKRLAQRVVFLDN-GRIAAQG 211 (211)
T ss_pred HHHHHHHHHHHhcCCEEEEEecCHH-HHHhhhCEEEEEEC-CEEeecC
Confidence 99999999875 4899999999986 46678999999985 6777543
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-35 Score=322.55 Aligned_cols=169 Identities=24% Similarity=0.303 Sum_probs=133.2
Q ss_pred eEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCChhcccceEEEEccCCCCCCCCCHHHHHHHhhh
Q 001400 849 TGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLESLLFSAW 928 (1085)
Q Consensus 849 s~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gy~~Q~~~~~~~~tv~e~l~~~~~ 928 (1085)
.++|..||+++++||||-||||+.++|+|..+ +.+|+ .. .-.++|-||--.-....||.+.+.-...
T Consensus 361 ~G~i~~gEvigilGpNgiGKTTFvk~LAG~ik--Pdeg~----~~-------~~~vSyKPQyI~~~~~gtV~~~l~~~~~ 427 (591)
T COG1245 361 EGEIYDGEVIGILGPNGIGKTTFVKLLAGVIK--PDEGS----EE-------DLKVSYKPQYISPDYDGTVEDLLRSAIR 427 (591)
T ss_pred CCeeecceEEEEECCCCcchHHHHHHHhcccc--CCCCC----Cc-------cceEeecceeecCCCCCcHHHHHHHhhh
Confidence 35778899999999999999999999999766 45665 11 1246788886544467899997753221
Q ss_pred hcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHH
Q 001400 929 LRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVM 1008 (1085)
Q Consensus 929 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEPtsgLD~~~~~~i~ 1008 (1085)
-+.. ..-+..++.+-++|..+.+..+ .+|||||.|||+||.+|.++.++.+||||++.||.+.+-.+-
T Consensus 428 ~~~~-------~s~~~~ei~~pl~l~~i~e~~v-----~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR~~va 495 (591)
T COG1245 428 SAFG-------SSYFKTEIVKPLNLEDLLERPV-----DELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVA 495 (591)
T ss_pred hhcc-------cchhHHhhcCccchHHHHhccc-----ccCCchhHHHHHHHHHhccccCEEEecCchhhccHHHHHHHH
Confidence 1111 1123457888888888887765 479999999999999999999999999999999999999999
Q ss_pred HHHHHHHH-CCceEEEEecCccHHHHHhcCEEEEEe
Q 001400 1009 RTVRNIVN-TGRTIVCTIHQPSIDIFESFDELLFMK 1043 (1085)
Q Consensus 1009 ~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~il~l~ 1043 (1085)
+.||++.. .++|.+++-||..+ +--..||++|..
T Consensus 496 kvIRR~~e~~~kta~vVdHDi~~-~dyvsDr~ivF~ 530 (591)
T COG1245 496 KVIRRFIENNEKTALVVDHDIYM-IDYVSDRLIVFE 530 (591)
T ss_pred HHHHHHHhhcCceEEEEecceeh-hhhhhceEEEEe
Confidence 99999975 58999999999764 445578888875
|
|
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-36 Score=331.83 Aligned_cols=222 Identities=27% Similarity=0.360 Sum_probs=176.7
Q ss_pred cCCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCC-eeeeEEEEcCccCCh--------hcccceEEEEcc
Q 001400 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGG-IIEGDIYISGYPKRQ--------ETFARISGYCEQ 909 (1085)
Q Consensus 839 ~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~-~~~G~i~i~g~~~~~--------~~~~~~~gy~~Q 909 (1085)
+++..+|+|+||++++||+++|+|+||||||||+++|+|...+. ..+|+|.++|.++.. ...++.++|++|
T Consensus 14 ~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~i~~~~q 93 (262)
T PRK09984 14 FNQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKSRANTGYIFQ 93 (262)
T ss_pred eCCeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHHHHHhheEEEcc
Confidence 34567999999999999999999999999999999999986532 236999999987532 223567999999
Q ss_pred CCCCCCCCCHHHHHHHhhhhcCCC-----cccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHh
Q 001400 910 NDIHSPGLTVLESLLFSAWLRLPS-----EIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELV 984 (1085)
Q Consensus 910 ~~~~~~~~tv~e~l~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~ 984 (1085)
++.+++.+|++||+.+......+. ..........++++++.+++.+..+... ..||+|||||++|||||+
T Consensus 94 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~ 168 (262)
T PRK09984 94 QFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRV-----STLSGGQQQRVAIARALM 168 (262)
T ss_pred ccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCc-----cccCHHHHHHHHHHHHHh
Confidence 999889999999998753210000 0111233456788999999976665543 579999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCCCc-hHHHH
Q 001400 985 ANPSIVFMDEPTSGLDARAAAIVMRTVRNIVN-TGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGSK-SCELI 1062 (1085)
Q Consensus 985 ~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~~~-~~~~~ 1062 (1085)
.+|++|||||||+|||+.++..+++.|+++.+ .|.|||++||+++ .+.+.+|++++|.+ |++++.|+..+. ...+.
T Consensus 169 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~-~~~~~~d~i~~l~~-g~i~~~g~~~~~~~~~~~ 246 (262)
T PRK09984 169 QQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVD-YALRYCERIVALRQ-GHVFYDGSSQQFDNERFD 246 (262)
T ss_pred cCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCHHHhccHHHH
Confidence 99999999999999999999999999999975 4899999999986 47788999999985 688888876542 22344
Q ss_pred HHHHh
Q 001400 1063 KYFEV 1067 (1085)
Q Consensus 1063 ~~~~~ 1067 (1085)
+.|..
T Consensus 247 ~~~~~ 251 (262)
T PRK09984 247 HLYRS 251 (262)
T ss_pred HHHhh
Confidence 44544
|
|
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-36 Score=326.20 Aligned_cols=204 Identities=27% Similarity=0.335 Sum_probs=167.2
Q ss_pred cCCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCChh----cccceEEEEccCCCCC
Q 001400 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE----TFARISGYCEQNDIHS 914 (1085)
Q Consensus 839 ~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~----~~~~~~gy~~Q~~~~~ 914 (1085)
+++..+|+|+||++++||+++|+|+||||||||+++|+|... +.+|+|.++|.+.... ..++.++|++|++.++
T Consensus 10 ~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~ 87 (230)
T TIGR03410 10 YGQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLP--VKSGSIRLDGEDITKLPPHERARAGIAYVPQGREIF 87 (230)
T ss_pred eCCeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCEECCCCCHHHHHHhCeEEeccCCccc
Confidence 345679999999999999999999999999999999999876 5689999999875421 1345799999999999
Q ss_pred CCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcC-CCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q 001400 915 PGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVE-LTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMD 993 (1085)
Q Consensus 915 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlD 993 (1085)
+.+|++||+.+....+.. . ..+..+++++.++ +.+..+.. +..||+|||||++|||||+.+|++|+||
T Consensus 88 ~~~tv~~~l~~~~~~~~~---~---~~~~~~~~l~~~~~l~~~~~~~-----~~~LS~G~~qrv~la~al~~~p~illlD 156 (230)
T TIGR03410 88 PRLTVEENLLTGLAALPR---R---SRKIPDEIYELFPVLKEMLGRR-----GGDLSGGQQQQLAIARALVTRPKLLLLD 156 (230)
T ss_pred CCCcHHHHHHHHHHhcCc---c---hHHHHHHHHHHHHhHHHHhhCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEec
Confidence 999999999876432211 1 1223466777765 34444443 3579999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHC-CceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCCCc
Q 001400 994 EPTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGSK 1057 (1085)
Q Consensus 994 EPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~~~ 1057 (1085)
|||+|||+.++..+++.|+++.++ |+|||++||+++ ++...+|++++|++ |+++..|+..+.
T Consensus 157 EPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~-g~i~~~~~~~~~ 219 (230)
T TIGR03410 157 EPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLD-FARELADRYYVMER-GRVVASGAGDEL 219 (230)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEECCHHHc
Confidence 999999999999999999998764 899999999986 46668999999985 789998886543
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-36 Score=327.51 Aligned_cols=204 Identities=25% Similarity=0.369 Sum_probs=172.0
Q ss_pred eecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCC------CceEEEEccCCCCCC
Q 001400 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP------PRTSAYVSQQDWQVA 222 (1085)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~------~~~~~yv~Q~d~~~~ 222 (1085)
++|+|+|++|++|++++|+||||||||||+++|+|.++|. +|+|.++|+++..... ++.++|++|++.+++
T Consensus 19 ~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 95 (233)
T cd03258 19 TALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPT---SGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLS 95 (233)
T ss_pred eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcccCCHHHHHHHHhheEEEccCcccCC
Confidence 6999999999999999999999999999999999999876 9999999998754321 357999999999899
Q ss_pred CCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCc
Q 001400 223 EMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDE 302 (1085)
Q Consensus 223 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 302 (1085)
.+||+||+.+.....+... ......++++++.+||++..+..+
T Consensus 96 ~~t~~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~--- 138 (233)
T cd03258 96 SRTVFENVALPLEIAGVPK----------------------------------AEIEERVLELLELVGLEDKADAYP--- 138 (233)
T ss_pred CCcHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHCCChhhhhcCh---
Confidence 9999999987643221100 000123677899999987766554
Q ss_pred ccccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEec
Q 001400 303 MLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLS 382 (1085)
Q Consensus 303 ~~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~ 382 (1085)
..|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++++.. +++|+.++|+.+++.+++|++++|+
T Consensus 139 --~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~-~~tvii~sH~~~~~~~~~d~i~~l~ 215 (233)
T cd03258 139 --AQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINREL-GLTIVLITHEMEVVKRICDRVAVME 215 (233)
T ss_pred --hhCCHHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 4699999999999999999999999999999999999999999999987543 4556667888889999999999999
Q ss_pred CCeEEEecChhhH
Q 001400 383 EGQIVYQGPRVSV 395 (1085)
Q Consensus 383 ~G~iv~~G~~~~~ 395 (1085)
+|++++.|+.+++
T Consensus 216 ~G~i~~~~~~~~~ 228 (233)
T cd03258 216 KGEVVEEGTVEEV 228 (233)
T ss_pred CCEEEEecCHHHH
Confidence 9999999987765
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-36 Score=342.36 Aligned_cols=206 Identities=21% Similarity=0.309 Sum_probs=175.2
Q ss_pred cCCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCc----cCCh---h---cc-cceEEEE
Q 001400 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGY----PKRQ---E---TF-ARISGYC 907 (1085)
Q Consensus 839 ~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~----~~~~---~---~~-~~~~gy~ 907 (1085)
++...+|+|+||+|++||+++|+|+||||||||+++|+|... +.+|+|+++|. ++.. . .+ ++.++|+
T Consensus 34 ~g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~--p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~v 111 (382)
T TIGR03415 34 TGLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNP--VSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMV 111 (382)
T ss_pred hCCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCcEEEECCEecccccccCCHHHHHHHhcCCEEEE
Confidence 456789999999999999999999999999999999999876 56899999996 3221 1 12 2579999
Q ss_pred ccCCCCCCCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCC
Q 001400 908 EQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANP 987 (1085)
Q Consensus 908 ~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p 987 (1085)
+|++.+++.+||+||+.|+...+ .....+..+.++++++.++|.+..+... .+||||||||++|||||+.+|
T Consensus 112 fQ~~~l~p~~Tv~eNi~~~~~~~---g~~~~~~~~~a~e~le~vgL~~~~~~~~-----~~LSgGq~QRV~LARALa~~P 183 (382)
T TIGR03415 112 FQKFALMPWLTVEENVAFGLEMQ---GMPEAERRKRVDEQLELVGLAQWADKKP-----GELSGGMQQRVGLARAFAMDA 183 (382)
T ss_pred ECCCcCCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999875433 1233445567889999999987766643 479999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCCC
Q 001400 988 SIVFMDEPTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGS 1056 (1085)
Q Consensus 988 ~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~~ 1056 (1085)
+||||||||+|||+.++..+++.|+++.++ |+|||++|||++ ++.+.+|++++|++ |+++..|+..+
T Consensus 184 ~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~-e~~~l~DrI~vl~~-G~iv~~g~~~e 251 (382)
T TIGR03415 184 DILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLD-EALKIGNRIAIMEG-GRIIQHGTPEE 251 (382)
T ss_pred CEEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEecCHHH
Confidence 999999999999999999999999999764 999999999987 47788999999985 78999887643
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-36 Score=346.59 Aligned_cols=200 Identities=30% Similarity=0.436 Sum_probs=166.7
Q ss_pred eecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCC---CCceEEEEccCCCCCCCCC
Q 001400 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV---PPRTSAYVSQQDWQVAEMT 225 (1085)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~---~~~~~~yv~Q~d~~~~~lT 225 (1085)
++++|+|++++||+.++|+|+||||||||+++|+|+++++ +|+|.+||.+..+.. ++++++||+|++.+|+ .|
T Consensus 335 ~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~---~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~-gT 410 (559)
T COG4988 335 PALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPT---QGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFA-GT 410 (559)
T ss_pred cccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCC---CceEEECCccccccCHHHHHhHeeeeCCCCcccc-cc
Confidence 6999999999999999999999999999999999999886 999999999987765 5689999999998666 59
Q ss_pred HHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCC------cccccccc
Q 001400 226 VRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGL------DTCADTLV 299 (1085)
Q Consensus 226 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL------~~~~dt~v 299 (1085)
+||||.++.... . ++.+.++++.-|| +...||.+
T Consensus 411 ireNi~l~~~~~----s------------------------------------~e~i~~al~~a~l~~~v~~p~GLdt~i 450 (559)
T COG4988 411 IRENILLARPDA----S------------------------------------DEEIIAALDQAGLLEFVPKPDGLDTVI 450 (559)
T ss_pred HHHHhhccCCcC----C------------------------------------HHHHHHHHHHhcHHHhhcCCCcccchh
Confidence 999999863210 0 0112233333333 45779999
Q ss_pred cCcccccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEE
Q 001400 300 GDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVI 379 (1085)
Q Consensus 300 g~~~~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii 379 (1085)
|+ ..++|||||+|||++|||++.+++++++||||++||..|...|.+.|.++++ ++|+++ ++|.. +...-+|+|+
T Consensus 451 ge-~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~--~ktvl~-itHrl-~~~~~~D~I~ 525 (559)
T COG4988 451 GE-GGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAK--QKTVLV-ITHRL-EDAADADRIV 525 (559)
T ss_pred cc-CCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHh--CCeEEE-EEcCh-HHHhcCCEEE
Confidence 96 4678999999999999999999999999999999999999999999999986 345554 55554 4556789999
Q ss_pred EecCCeEEEecChhhHHH
Q 001400 380 LLSEGQIVYQGPRVSVLD 397 (1085)
Q Consensus 380 ~L~~G~iv~~G~~~~~~~ 397 (1085)
+|++|+++++|.++++.+
T Consensus 526 vld~G~l~~~g~~~~L~~ 543 (559)
T COG4988 526 VLDNGRLVEQGTHEELSE 543 (559)
T ss_pred EecCCceeccCCHHHHhh
Confidence 999999999999998853
|
|
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-36 Score=323.20 Aligned_cols=200 Identities=30% Similarity=0.389 Sum_probs=168.4
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCCCceEEEEccCCCCCCCCCHH
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVR 227 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 227 (1085)
+++|+|+|+.|++|++++|+||||||||||+++|+|.++|. +|+|.++|.++.. .++.++|++|++.+++.+||+
T Consensus 17 ~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~--~~~~i~~v~q~~~~~~~~tv~ 91 (220)
T cd03293 17 VTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPT---SGEVLVDGEPVTG--PGPDRGYVFQQDALLPWLTVL 91 (220)
T ss_pred eEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECcc--ccCcEEEEecccccccCCCHH
Confidence 46999999999999999999999999999999999998776 9999999988753 346799999999888889999
Q ss_pred HHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCcccccC
Q 001400 228 ETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGI 307 (1085)
Q Consensus 228 E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 307 (1085)
||+.++....+... ......++.+++.+||++..+..+ ..|
T Consensus 92 e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-----~~L 132 (220)
T cd03293 92 DNVALGLELQGVPK----------------------------------AEARERAEELLELVGLSGFENAYP-----HQL 132 (220)
T ss_pred HHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCChhhhhCCc-----ccC
Confidence 99988643321100 000123678899999987766654 469
Q ss_pred chhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEec--CCe
Q 001400 308 SGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLS--EGQ 385 (1085)
Q Consensus 308 SGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~--~G~ 385 (1085)
|||||||++||+||+.+|++++|||||+|||+.++..+.+.|+++.+.. +++|+.++|+.+++.+++|++++|+ +|+
T Consensus 133 SgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~~~~G~ 211 (220)
T cd03293 133 SGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRET-GKTVLLVTHDIDEAVFLADRVVVLSARPGR 211 (220)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHc-CCEEEEEecCHHHHHHhCCEEEEEECCCCE
Confidence 9999999999999999999999999999999999999999999886533 4456667888889999999999999 799
Q ss_pred EEEecCh
Q 001400 386 IVYQGPR 392 (1085)
Q Consensus 386 iv~~G~~ 392 (1085)
++..++.
T Consensus 212 i~~~~~~ 218 (220)
T cd03293 212 IVAEVEV 218 (220)
T ss_pred EEEEEEe
Confidence 9988764
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-36 Score=322.15 Aligned_cols=199 Identities=31% Similarity=0.399 Sum_probs=167.7
Q ss_pred eecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCC-CCceEEEEccCCCCCCCCCHH
Q 001400 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV-PPRTSAYVSQQDWQVAEMTVR 227 (1085)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~-~~~~~~yv~Q~d~~~~~lTV~ 227 (1085)
++|+|+|++|++|++++|+|||||||||||++|+|.++|. +|+|.++|.++.... .++.++|++|++.+++.+||+
T Consensus 14 ~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~v~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 90 (213)
T cd03301 14 TALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPT---SGRIYIGGRDVTDLPPKDRDIAMVFQNYALYPHMTVY 90 (213)
T ss_pred eeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCCcccceEEEEecChhhccCCCHH
Confidence 5999999999999999999999999999999999998776 999999998875432 235799999999888899999
Q ss_pred HHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCcccccC
Q 001400 228 ETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGI 307 (1085)
Q Consensus 228 E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 307 (1085)
||+.+.....+... .+....++++++.+||++..+..+ +.|
T Consensus 91 ~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-----~~L 131 (213)
T cd03301 91 DNIAFGLKLRKVPK----------------------------------DEIDERVREVAELLQIEHLLDRKP-----KQL 131 (213)
T ss_pred HHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCCHHHHhCCh-----hhC
Confidence 99988643321100 001123677899999987777655 469
Q ss_pred chhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEecCCeEE
Q 001400 308 SGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIV 387 (1085)
Q Consensus 308 SGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~~G~iv 387 (1085)
|||||||++||+||+.+|++++|||||+|||+.++..+.+.|+++++..+ ++|+.++|+.+++.+++|+|++|++|+++
T Consensus 132 S~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~-~tvi~~sH~~~~~~~~~d~i~~l~~g~~~ 210 (213)
T cd03301 132 SGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLG-TTTIYVTHDQVEAMTMADRIAVMNDGQIQ 210 (213)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcC-CEEEEEeCCHHHHHHhcCeEEEEECCEEE
Confidence 99999999999999999999999999999999999999999999876433 45666778889999999999999999999
Q ss_pred Eec
Q 001400 388 YQG 390 (1085)
Q Consensus 388 ~~G 390 (1085)
+.|
T Consensus 211 ~~g 213 (213)
T cd03301 211 QIG 213 (213)
T ss_pred ecC
Confidence 876
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-36 Score=338.56 Aligned_cols=213 Identities=20% Similarity=0.258 Sum_probs=175.7
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCC-------CceEEEEccCC--
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP-------PRTSAYVSQQD-- 218 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~-------~~~~~yv~Q~d-- 218 (1085)
..+|+|||++|++||+++|+|+||||||||+++|+|.+++....+|+|.++|.++..... .+.++||+|++
T Consensus 29 ~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~ 108 (330)
T PRK09473 29 VTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKELNKLRAEQISMIFQDPMT 108 (330)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHHHHHhcCCEEEEEcCchh
Confidence 569999999999999999999999999999999999987642348999999998765431 24799999997
Q ss_pred CCCCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCccccccc
Q 001400 219 WQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTL 298 (1085)
Q Consensus 219 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~ 298 (1085)
.+.+.+||.+++.+......... . .+...++.++|+.+||++..++
T Consensus 109 ~l~p~~~v~~~i~~~~~~~~~~~---------~------------------------~~~~~~~~~~L~~vgL~~~~~~- 154 (330)
T PRK09473 109 SLNPYMRVGEQLMEVLMLHKGMS---------K------------------------AEAFEESVRMLDAVKMPEARKR- 154 (330)
T ss_pred hcCCCCCHHHHHHHHHHHhcCCC---------H------------------------HHHHHHHHHHHHHcCCCChHHH-
Confidence 67899999999976543221000 0 0012246778899999764332
Q ss_pred ccCcccccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeE
Q 001400 299 VGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDV 378 (1085)
Q Consensus 299 vg~~~~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i 378 (1085)
. +..+.+|||||||||+||+||+.+|++|++||||+|||..++.+|.+.|+++.+.. +++++.++|+...+.+++|+|
T Consensus 155 ~-~~~p~~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~-g~til~iTHdl~~~~~~~Dri 232 (330)
T PRK09473 155 M-KMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREF-NTAIIMITHDLGVVAGICDKV 232 (330)
T ss_pred h-cCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHc-CCEEEEEECCHHHHHHhCCEE
Confidence 2 35667899999999999999999999999999999999999999999999987643 466777899999999999999
Q ss_pred EEecCCeEEEecChhhHH
Q 001400 379 ILLSEGQIVYQGPRVSVL 396 (1085)
Q Consensus 379 i~L~~G~iv~~G~~~~~~ 396 (1085)
++|++|++++.|+.+++.
T Consensus 233 ~vm~~G~ive~g~~~~i~ 250 (330)
T PRK09473 233 LVMYAGRTMEYGNARDVF 250 (330)
T ss_pred EEEECCEEEEECCHHHHH
Confidence 999999999999998875
|
|
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-36 Score=326.52 Aligned_cols=203 Identities=24% Similarity=0.325 Sum_probs=168.4
Q ss_pred eecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhh-----CCCCceeeEEEECCccCCCCC-----CCceEEEEccCC
Q 001400 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRL-----GHHLQVSGKITYNGHGFKEFV-----PPRTSAYVSQQD 218 (1085)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l-----~~~~~~~G~i~~~G~~~~~~~-----~~~~~~yv~Q~d 218 (1085)
++|+|+|++|++|++++|+||||||||||+++|+|.+ ++. +|+|.++|.++.... .++.++|++|++
T Consensus 14 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~ 90 (227)
T cd03260 14 HALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPD---EGEVLLDGKDIYDLDVDVLELRRRVGMVFQKP 90 (227)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCC---CeEEEECCEEhhhcchHHHHHHhhEEEEecCc
Confidence 6999999999999999999999999999999999998 554 999999998865432 245799999998
Q ss_pred CCCCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCccccccc
Q 001400 219 WQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTL 298 (1085)
Q Consensus 219 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~ 298 (1085)
.++ .+||+||+.++....+.... .....+++++++.+||.+..+..
T Consensus 91 ~~~-~~tv~e~l~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~ 136 (227)
T cd03260 91 NPF-PGSIYDNVAYGLRLHGIKLK---------------------------------EELDERVEEALRKAALWDEVKDR 136 (227)
T ss_pred hhc-cccHHHHHHhHHHhcCCCcH---------------------------------HHHHHHHHHHHHHcCCChHHhcc
Confidence 877 79999999886543211000 00112367789999998766554
Q ss_pred ccCcccccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeE
Q 001400 299 VGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDV 378 (1085)
Q Consensus 299 vg~~~~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i 378 (1085)
+. +..|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++++. ++|+.++|+.+++.+++|++
T Consensus 137 ~~---~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~---~tii~~sH~~~~~~~~~d~i 210 (227)
T cd03260 137 LH---ALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKE---YTIVIVTHNMQQAARVADRT 210 (227)
T ss_pred CC---cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhC---cEEEEEeccHHHHHHhCCEE
Confidence 30 3579999999999999999999999999999999999999999999998653 56666888999999999999
Q ss_pred EEecCCeEEEecChhh
Q 001400 379 ILLSEGQIVYQGPRVS 394 (1085)
Q Consensus 379 i~L~~G~iv~~G~~~~ 394 (1085)
++|++|++++.|++++
T Consensus 211 ~~l~~G~i~~~g~~~~ 226 (227)
T cd03260 211 AFLLNGRLVEFGPTEQ 226 (227)
T ss_pred EEEeCCEEEEecCccc
Confidence 9999999999998654
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-36 Score=339.06 Aligned_cols=205 Identities=25% Similarity=0.366 Sum_probs=176.3
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCC--CCceEEEEccCCCCCCCCC
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV--PPRTSAYVSQQDWQVAEMT 225 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~lT 225 (1085)
+.+|+|+|+.+++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+|
T Consensus 15 ~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~---~G~i~i~g~~~~~~~~~~~~~ig~~~q~~~l~~~~t 91 (301)
T TIGR03522 15 QNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPD---SGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDMY 91 (301)
T ss_pred EEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEcccChHHHHhceEEecCCCCCCCCCc
Confidence 46999999999999999999999999999999999998876 999999998875421 2457999999999999999
Q ss_pred HHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCcccc
Q 001400 226 VRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLK 305 (1085)
Q Consensus 226 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 305 (1085)
|+||+.|.++..+... .+...+++++++.+||++..++.+ +
T Consensus 92 v~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gl~~~~~~~~-----~ 132 (301)
T TIGR03522 92 VREYLQFIAGIYGMKG----------------------------------QLLKQRVEEMIELVGLRPEQHKKI-----G 132 (301)
T ss_pred HHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHCCCchHhcCch-----h
Confidence 9999998665432110 001224778899999998887765 4
Q ss_pred cCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEecCCe
Q 001400 306 GISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQ 385 (1085)
Q Consensus 306 ~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~~G~ 385 (1085)
.|||||||||+||+||+++|++|+|||||+|||+.++.++++.|++++. + ++|+.++|..+++.++||+|++|++|+
T Consensus 133 ~LS~G~~qrv~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~--~-~tiii~sH~l~~~~~~~d~i~~l~~G~ 209 (301)
T TIGR03522 133 QLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGK--D-KTIILSTHIMQEVEAICDRVIIINKGK 209 (301)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcC--C-CEEEEEcCCHHHHHHhCCEEEEEECCE
Confidence 6999999999999999999999999999999999999999999998853 4 566778899999999999999999999
Q ss_pred EEEecChhhHHH
Q 001400 386 IVYQGPRVSVLD 397 (1085)
Q Consensus 386 iv~~G~~~~~~~ 397 (1085)
+++.|+.+++..
T Consensus 210 i~~~g~~~~~~~ 221 (301)
T TIGR03522 210 IVADKKLDELSA 221 (301)
T ss_pred EEEeCCHHHHHH
Confidence 999999988754
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-36 Score=333.61 Aligned_cols=201 Identities=24% Similarity=0.332 Sum_probs=169.4
Q ss_pred eEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCCh----hcccceEEEEccCCC-CCCC
Q 001400 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ----ETFARISGYCEQNDI-HSPG 916 (1085)
Q Consensus 842 ~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~----~~~~~~~gy~~Q~~~-~~~~ 916 (1085)
..+|+||||+|++||++||+|+||||||||+++|+|..+ +.+|+|.++|.++.. ...++.+||++|++. .+..
T Consensus 15 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 92 (274)
T PRK13644 15 TPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLR--PQKGKVLVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVG 92 (274)
T ss_pred CceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEECCccccHHHHHhheEEEEEChhhhccc
Confidence 469999999999999999999999999999999999866 568999999987642 234567999999975 3567
Q ss_pred CCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Q 001400 917 LTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPT 996 (1085)
Q Consensus 917 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEPt 996 (1085)
.|+.||+.|..... ........+.++++++.+++.+..+... ..||+|||||++|||||+.+|+||||||||
T Consensus 93 ~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrv~laral~~~p~lllLDEPt 164 (274)
T PRK13644 93 RTVEEDLAFGPENL---CLPPIEIRKRVDRALAEIGLEKYRHRSP-----KTLSGGQGQCVALAGILTMEPECLIFDEVT 164 (274)
T ss_pred chHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHHHhcCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 89999998764322 1223334456788999999987666543 579999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCC
Q 001400 997 SGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1085)
Q Consensus 997 sgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~ 1055 (1085)
+|||+.++..+++.|+++.++|.|||++||+++ ++ +.+|++++|++ |++++.|+..
T Consensus 165 ~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~-~~-~~~d~v~~l~~-G~i~~~g~~~ 220 (274)
T PRK13644 165 SMLDPDSGIAVLERIKKLHEKGKTIVYITHNLE-EL-HDADRIIVMDR-GKIVLEGEPE 220 (274)
T ss_pred ccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HH-hhCCEEEEEEC-CEEEEECCHH
Confidence 999999999999999998777999999999986 34 66999999985 6888888754
|
|
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-36 Score=337.15 Aligned_cols=218 Identities=23% Similarity=0.327 Sum_probs=175.5
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCC-------CCCceEEEEccCCC-
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEF-------VPPRTSAYVSQQDW- 219 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~-------~~~~~~~yv~Q~d~- 219 (1085)
.++|+|||++|++||+++|+||||||||||+++|+|.++|+ +|+|.++|+++... ..++.++||+|++.
T Consensus 20 ~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~ 96 (290)
T PRK13634 20 RRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPT---SGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEH 96 (290)
T ss_pred ccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECCEECccccccchHHHHHhhEEEEeeCchh
Confidence 35999999999999999999999999999999999998876 99999999987531 12357999999862
Q ss_pred CCCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCc-cccccc
Q 001400 220 QVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLD-TCADTL 298 (1085)
Q Consensus 220 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~ 298 (1085)
.+...||+||+.|+....+... .+...+++++++.+||. ...++.
T Consensus 97 ~l~~~tv~eni~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gL~~~~~~~~ 142 (290)
T PRK13634 97 QLFEETVEKDICFGPMNFGVSE----------------------------------EDAKQKAREMIELVGLPEELLARS 142 (290)
T ss_pred hhhhhhHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHCCCChhhhhCC
Confidence 3445799999998644321100 00112478889999996 455654
Q ss_pred ccCcccccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeE
Q 001400 299 VGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDV 378 (1085)
Q Consensus 299 vg~~~~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i 378 (1085)
+ +.|||||||||+||+||+.+|++|+|||||+|||+.++.++.+.|++++... +++|+.++|+.+++.+++|+|
T Consensus 143 ~-----~~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~-g~tviiitHd~~~~~~~~drv 216 (290)
T PRK13634 143 P-----FELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEK-GLTTVLVTHSMEDAARYADQI 216 (290)
T ss_pred c-----ccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEE
Confidence 4 5699999999999999999999999999999999999999999999987643 456666889999999999999
Q ss_pred EEecCCeEEEecChhhHH---HHHHhCCCCCCC
Q 001400 379 ILLSEGQIVYQGPRVSVL---DFFASMGFSCPK 408 (1085)
Q Consensus 379 i~L~~G~iv~~G~~~~~~---~~f~~~G~~~p~ 408 (1085)
++|++|++++.|+++++. ..+...|..+|.
T Consensus 217 ~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~ 249 (290)
T PRK13634 217 VVMHKGTVFLQGTPREIFADPDELEAIGLDLPE 249 (290)
T ss_pred EEEECCEEEEECCHHHHhcCHHHHHHCCCCCCH
Confidence 999999999999988764 223344544443
|
|
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-36 Score=332.00 Aligned_cols=208 Identities=28% Similarity=0.395 Sum_probs=171.0
Q ss_pred CCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCC---hhcccceEEEEccCCCCCCC
Q 001400 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKR---QETFARISGYCEQNDIHSPG 916 (1085)
Q Consensus 840 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~---~~~~~~~~gy~~Q~~~~~~~ 916 (1085)
++..+|+|+||+|++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.++. ...+++.++|++|++.+++.
T Consensus 22 ~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~ 99 (265)
T PRK10575 22 PGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQP--PSEGEILLDAQPLESWSSKAFARKVAYLPQQLPAAEG 99 (265)
T ss_pred CCEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--CCCCEEEECCEehhhCCHHHHhhheEEeccCCCCCCC
Confidence 44679999999999999999999999999999999999866 56899999998753 23345679999999888888
Q ss_pred CCHHHHHHHhhhhcCC-CcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCC
Q 001400 917 LTVLESLLFSAWLRLP-SEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEP 995 (1085)
Q Consensus 917 ~tv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEP 995 (1085)
+|+.||+.+....... .........+.++++++.+++.+..+... ..||||||||++|||||+.+|+|||||||
T Consensus 100 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~laral~~~p~lllLDEP 174 (265)
T PRK10575 100 MTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLV-----DSLSGGERQRAWIAMLVAQDSRCLLLDEP 174 (265)
T ss_pred ccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 9999999875321100 00111223455788999999876555543 47999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHC-CceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCCC
Q 001400 996 TSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGS 1056 (1085)
Q Consensus 996 tsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~~ 1056 (1085)
|+|||+.++..+.+.|+++.++ |.|||++||+++ ++.+.+|++++|++ |+++..|+..+
T Consensus 175 t~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~-~i~~~~d~i~~l~~-G~i~~~~~~~~ 234 (265)
T PRK10575 175 TSALDIAHQVDVLALVHRLSQERGLTVIAVLHDIN-MAARYCDYLVALRG-GEMIAQGTPAE 234 (265)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CeEEEecCHHH
Confidence 9999999999999999998765 899999999986 47788999999985 78888887543
|
|
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-36 Score=323.44 Aligned_cols=201 Identities=20% Similarity=0.305 Sum_probs=166.7
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCC-------CceEEEEccCCCC
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP-------PRTSAYVSQQDWQ 220 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~-------~~~~~yv~Q~d~~ 220 (1085)
+++|+|+|++|++|++++|+|||||||||||++|+|.++|. +|+|+++|.++..... ++.++|++|++.+
T Consensus 22 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~~ 98 (233)
T PRK11629 22 TDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPT---SGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHL 98 (233)
T ss_pred eeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcCcCCHHHHHHHHhccEEEEecCccc
Confidence 46999999999999999999999999999999999998776 9999999998765432 2569999999988
Q ss_pred CCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCccccccccc
Q 001400 221 VAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVG 300 (1085)
Q Consensus 221 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 300 (1085)
++.+||+||+.+.....+... .+.+.+++++++.+||++..++.+
T Consensus 99 ~~~~tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gl~~~~~~~~- 143 (233)
T PRK11629 99 LPDFTALENVAMPLLIGKKKP----------------------------------AEINSRALEMLAAVGLEHRANHRP- 143 (233)
T ss_pred CCCCCHHHHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhhCCh-
Confidence 999999999988643221000 001224678899999987666554
Q ss_pred CcccccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEE
Q 001400 301 DEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVIL 380 (1085)
Q Consensus 301 ~~~~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~ 380 (1085)
..|||||||||+||+|++.+|++|+|||||+|||+.++..+.+.|+++++.. +++|+.++|+.+++.. +|++++
T Consensus 144 ----~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~-g~tvii~sH~~~~~~~-~~~~~~ 217 (233)
T PRK11629 144 ----SELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQ-GTAFLVVTHDLQLAKR-MSRQLE 217 (233)
T ss_pred ----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHh-hCEEEE
Confidence 4699999999999999999999999999999999999999999999986533 4556667788888766 589999
Q ss_pred ecCCeEEEecCh
Q 001400 381 LSEGQIVYQGPR 392 (1085)
Q Consensus 381 L~~G~iv~~G~~ 392 (1085)
|++|++++.|+.
T Consensus 218 l~~G~i~~~~~~ 229 (233)
T PRK11629 218 MRDGRLTAELSL 229 (233)
T ss_pred EECCEEEEEecc
Confidence 999999998864
|
|
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-36 Score=345.91 Aligned_cols=206 Identities=20% Similarity=0.281 Sum_probs=175.5
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCC-------CceEEEEccCCCC
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP-------PRTSAYVSQQDWQ 220 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~-------~~~~~yv~Q~d~~ 220 (1085)
..+|+|+|++|++||+++|+|||||||||||++|+|+++|. +|+|.++|.++..... ++.++||+|++.+
T Consensus 41 ~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~---sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l 117 (400)
T PRK10070 41 SLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPT---RGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFAL 117 (400)
T ss_pred eEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCC---CCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcC
Confidence 46899999999999999999999999999999999999876 9999999998765432 3479999999999
Q ss_pred CCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCccccccccc
Q 001400 221 VAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVG 300 (1085)
Q Consensus 221 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 300 (1085)
++.+||+||+.|+....+... .+...+++++++.+||++..++.+
T Consensus 118 ~~~~Tv~enl~~~~~~~~~~~----------------------------------~~~~~~~~e~L~~~gL~~~~~~~~- 162 (400)
T PRK10070 118 MPHMTVLDNTAFGMELAGINA----------------------------------EERREKALDALRQVGLENYAHSYP- 162 (400)
T ss_pred CCCCCHHHHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCCChhhhcCc-
Confidence 999999999998754332110 001124678899999987766554
Q ss_pred CcccccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEE
Q 001400 301 DEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVIL 380 (1085)
Q Consensus 301 ~~~~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~ 380 (1085)
+.|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++.+.. +++|+.++|+.+++..++|+|++
T Consensus 163 ----~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~-g~TIIivTHd~~~~~~~~Dri~v 237 (400)
T PRK10070 163 ----DELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKH-QRTIVFISHDLDEAMRIGDRIAI 237 (400)
T ss_pred ----ccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHC-CCeEEEEECCHHHHHHhCCEEEE
Confidence 5699999999999999999999999999999999999999999999987543 44566688999999999999999
Q ss_pred ecCCeEEEecChhhHH
Q 001400 381 LSEGQIVYQGPRVSVL 396 (1085)
Q Consensus 381 L~~G~iv~~G~~~~~~ 396 (1085)
|++|++++.|+++++.
T Consensus 238 L~~G~i~~~g~~~~l~ 253 (400)
T PRK10070 238 MQNGEVVQVGTPDEIL 253 (400)
T ss_pred EECCEEEecCCHHHHH
Confidence 9999999999988764
|
|
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-36 Score=323.28 Aligned_cols=198 Identities=28% Similarity=0.435 Sum_probs=166.6
Q ss_pred eecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCC--CCCceEEEEccCCCCCCCCCH
Q 001400 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEF--VPPRTSAYVSQQDWQVAEMTV 226 (1085)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~--~~~~~~~yv~Q~d~~~~~lTV 226 (1085)
++|+|+|+++++|++++|+|||||||||||++|+|.++|. +|+|.++|.++... ..++.++|++|++.+++.+||
T Consensus 19 ~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 95 (218)
T cd03266 19 QAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPD---AGFATVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTA 95 (218)
T ss_pred eeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC---CceEEECCEEcccCHHHHHhhEEEecCCcccCcCCCH
Confidence 6999999999999999999999999999999999998876 99999999887532 124679999999988898999
Q ss_pred HHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCccccc
Q 001400 227 RETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKG 306 (1085)
Q Consensus 227 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 306 (1085)
+||+.+.....+... ......++++++.+||++..+..+ ..
T Consensus 96 ~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-----~~ 136 (218)
T cd03266 96 RENLEYFAGLYGLKG----------------------------------DELTARLEELADRLGMEELLDRRV-----GG 136 (218)
T ss_pred HHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCHHHHhhhh-----hh
Confidence 999987543221100 001224678899999987776654 46
Q ss_pred CchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEecCCeE
Q 001400 307 ISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQI 386 (1085)
Q Consensus 307 LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~~G~i 386 (1085)
||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++.+. +.+++.++|+.+++.+++|++++|++|++
T Consensus 137 LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~--~~tii~~tH~~~~~~~~~d~i~~l~~G~i 214 (218)
T cd03266 137 FSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRAL--GKCILFSTHIMQEVERLCDRVVVLHRGRV 214 (218)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHhcCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999999998642 44566688888999999999999999999
Q ss_pred EEec
Q 001400 387 VYQG 390 (1085)
Q Consensus 387 v~~G 390 (1085)
++.|
T Consensus 215 ~~~~ 218 (218)
T cd03266 215 VYEG 218 (218)
T ss_pred eecC
Confidence 8764
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-36 Score=324.31 Aligned_cols=203 Identities=29% Similarity=0.426 Sum_probs=171.2
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCC--CCCceEEEEccCCCCCCCCC
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEF--VPPRTSAYVSQQDWQVAEMT 225 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~--~~~~~~~yv~Q~d~~~~~lT 225 (1085)
+++|+|+|+++++|++++|+||||||||||+++|+|.++|. +|+|.++|+++... ..++.++|++|++.+++.+|
T Consensus 15 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~t 91 (220)
T cd03263 15 KPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPT---SGTAYINGYSIRTDRKAARQSLGYCPQFDALFDELT 91 (220)
T ss_pred ceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEecccchHHHhhhEEEecCcCCccccCC
Confidence 46999999999999999999999999999999999998876 99999999887532 12456999999998888999
Q ss_pred HHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCcccc
Q 001400 226 VRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLK 305 (1085)
Q Consensus 226 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 305 (1085)
|+||+.+..+..+... + .....++++++.+||++..++.+ .
T Consensus 92 v~~~l~~~~~~~~~~~--~--------------------------------~~~~~~~~~l~~~~l~~~~~~~~-----~ 132 (220)
T cd03263 92 VREHLRFYARLKGLPK--S--------------------------------EIKEEVELLLRVLGLTDKANKRA-----R 132 (220)
T ss_pred HHHHHHHHHHHcCCCH--H--------------------------------HHHHHHHHHHHHcCCHHHHhChh-----h
Confidence 9999988654322100 0 00123677899999987777655 4
Q ss_pred cCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEecCCe
Q 001400 306 GISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQ 385 (1085)
Q Consensus 306 ~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~~G~ 385 (1085)
.|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++++ + ++++.++|+.+++.+++|++++|++|+
T Consensus 133 ~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~-~tii~~sH~~~~~~~~~d~i~~l~~g~ 209 (220)
T cd03263 133 TLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK--G-RSIILTTHSMDEAEALCDRIAIMSDGK 209 (220)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhc--C-CEEEEEcCCHHHHHHhcCEEEEEECCE
Confidence 6999999999999999999999999999999999999999999999864 3 566668888889999999999999999
Q ss_pred EEEecChhhH
Q 001400 386 IVYQGPRVSV 395 (1085)
Q Consensus 386 iv~~G~~~~~ 395 (1085)
+++.|+.+++
T Consensus 210 i~~~~~~~~~ 219 (220)
T cd03263 210 LRCIGSPQEL 219 (220)
T ss_pred EEecCCHHHc
Confidence 9999987653
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-36 Score=328.38 Aligned_cols=210 Identities=26% Similarity=0.273 Sum_probs=168.9
Q ss_pred CCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCC---eeeeEEEEcCccCC-----hhcccceEEEEccCC
Q 001400 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGG---IIEGDIYISGYPKR-----QETFARISGYCEQND 911 (1085)
Q Consensus 840 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~---~~~G~i~i~g~~~~-----~~~~~~~~gy~~Q~~ 911 (1085)
++..+|+|+||+|++||+++|+|+||||||||+++|+|..++. +.+|+|.++|.++. ...+++.++|++|++
T Consensus 15 ~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~ 94 (253)
T PRK14267 15 GSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMVFQYP 94 (253)
T ss_pred CCeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHHHhhceeEEecCC
Confidence 4457999999999999999999999999999999999986532 35899999998763 123456799999999
Q ss_pred CCCCCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcc-cccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEE
Q 001400 912 IHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSL-SGALIGLPGINGLSTEQRKRLTIAVELVANPSIV 990 (1085)
Q Consensus 912 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~il 990 (1085)
.+++.+|+.||+.+....+.. ........+.++++++.+++... .+.... .+..||+|||||++|||||+.+|++|
T Consensus 95 ~~~~~~tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~--~~~~LS~G~~qrv~laral~~~p~ll 171 (253)
T PRK14267 95 NPFPHLTIYDNVAIGVKLNGL-VKSKKELDERVEWALKKAALWDEVKDRLND--YPSNLSGGQRQRLVIARALAMKPKIL 171 (253)
T ss_pred ccCCCCcHHHHHHHHHHhcCc-cCCHHHHHHHHHHHHHHcCCccchhhhhcc--ChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 999999999999876432211 01122334457788888887532 111111 13579999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCC
Q 001400 991 FMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1085)
Q Consensus 991 llDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~ 1055 (1085)
+|||||+|||+.++..+.+.|+++.+ ++|||++||+++ .+...+|++++|++ |++++.|+..
T Consensus 172 llDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~ 233 (253)
T PRK14267 172 LMDEPTANIDPVGTAKIEELLFELKK-EYTIVLVTHSPA-QAARVSDYVAFLYL-GKLIEVGPTR 233 (253)
T ss_pred EEcCCCccCCHHHHHHHHHHHHHHhh-CCEEEEEECCHH-HHHhhCCEEEEEEC-CEEEEeCCHH
Confidence 99999999999999999999999864 799999999986 46778999999985 7899888754
|
|
| >COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-36 Score=296.79 Aligned_cols=201 Identities=28% Similarity=0.392 Sum_probs=177.6
Q ss_pred eEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCChhcccceEEEEccCCCCCCCCCHHH
Q 001400 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLE 921 (1085)
Q Consensus 842 ~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gy~~Q~~~~~~~~tv~e 921 (1085)
..+|+|+|++|.+||.++++|||||||||||++++|..+ +..|+|.+||.++..... .-|.|+|++.++|-+|+.|
T Consensus 18 ~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~--P~~G~i~l~~r~i~gPga--ergvVFQ~~~LlPWl~~~d 93 (259)
T COG4525 18 RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVT--PSRGSIQLNGRRIEGPGA--ERGVVFQNEALLPWLNVID 93 (259)
T ss_pred hhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcC--cccceEEECCEeccCCCc--cceeEeccCccchhhHHHH
Confidence 348999999999999999999999999999999999887 568999999998754322 2389999999999999999
Q ss_pred HHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCH
Q 001400 922 SLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDA 1001 (1085)
Q Consensus 922 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEPtsgLD~ 1001 (1085)
|+.|+..++ .+.+.++.+.+.+.+..++|.+..++.+ .+||||||||+.|||||+.+|+.|+||||+++||+
T Consensus 94 NvafgL~l~---Gi~k~~R~~~a~q~l~~VgL~~~~~~~i-----~qLSGGmrQRvGiARALa~eP~~LlLDEPfgAlDa 165 (259)
T COG4525 94 NVAFGLQLR---GIEKAQRREIAHQMLALVGLEGAEHKYI-----WQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDA 165 (259)
T ss_pred HHHHHHHhc---CCCHHHHHHHHHHHHHHhCcccccccce-----EeecchHHHHHHHHHHhhcCcceEeecCchhhHHH
Confidence 999998877 4567888889999999999998887654 58999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH-CCceEEEEecCccHHHHHhcCEEEEEecC-cEEEEecCCC
Q 001400 1002 RAAAIVMRTVRNIVN-TGRTIVCTIHQPSIDIFESFDELLFMKRG-GELIYAGPLG 1055 (1085)
Q Consensus 1002 ~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~il~l~~g-G~~~~~g~~~ 1055 (1085)
-+++.++++|-++.+ +|+.+++|||+.+. ..-.+++++||..| |+++..-+++
T Consensus 166 ~tRe~mQelLldlw~~tgk~~lliTH~ieE-AlflatrLvvlsp~pgRvv~~~~~d 220 (259)
T COG4525 166 LTREQMQELLLDLWQETGKQVLLITHDIEE-ALFLATRLVVLSPGPGRVVERLPLD 220 (259)
T ss_pred HHHHHHHHHHHHHHHHhCCeEEEEeccHHH-HHhhhheeEEecCCCceeeEecCCC
Confidence 999999999999875 69999999999874 44467999999854 7888877764
|
|
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=329.02 Aligned_cols=207 Identities=21% Similarity=0.342 Sum_probs=172.5
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCC------CCceEEEEccCCCCC
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV------PPRTSAYVSQQDWQV 221 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~------~~~~~~yv~Q~d~~~ 221 (1085)
+.+|+|+|++|++|++++|+|||||||||||++|+|.++|. +|+|.++|.++.... .++.++|++|++.++
T Consensus 20 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~ 96 (269)
T PRK11831 20 RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPD---HGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGALF 96 (269)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEccccChhhHHHHhhcEEEEecccccC
Confidence 35999999999999999999999999999999999998876 999999998775432 135699999999888
Q ss_pred CCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccC
Q 001400 222 AEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGD 301 (1085)
Q Consensus 222 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 301 (1085)
+.+||.||+.+....... .+ .. .....+..+++.+||++..++.+
T Consensus 97 ~~~tv~enl~~~~~~~~~---~~------~~------------------------~~~~~~~~~l~~~gl~~~~~~~~-- 141 (269)
T PRK11831 97 TDMNVFDNVAYPLREHTQ---LP------AP------------------------LLHSTVMMKLEAVGLRGAAKLMP-- 141 (269)
T ss_pred CCCCHHHHHHHHHHHccC---CC------HH------------------------HHHHHHHHHHHHcCChhhhhCCh--
Confidence 999999999875321100 00 00 00123677889999988777655
Q ss_pred cccccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEe
Q 001400 302 EMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILL 381 (1085)
Q Consensus 302 ~~~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L 381 (1085)
..|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++++.. +++|+.++|+.+++.+++|++++|
T Consensus 142 ---~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~-g~tiiivsH~~~~~~~~~d~v~~l 217 (269)
T PRK11831 142 ---SELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSAL-GVTCVVVSHDVPEVLSIADHAYIV 217 (269)
T ss_pred ---hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhc-CcEEEEEecCHHHHHHhhCEEEEE
Confidence 4699999999999999999999999999999999999999999999987533 455666889999999999999999
Q ss_pred cCCeEEEecChhhHH
Q 001400 382 SEGQIVYQGPRVSVL 396 (1085)
Q Consensus 382 ~~G~iv~~G~~~~~~ 396 (1085)
++|++++.|+++++.
T Consensus 218 ~~G~i~~~g~~~~~~ 232 (269)
T PRK11831 218 ADKKIVAHGSAQALQ 232 (269)
T ss_pred ECCEEEEeCCHHHHh
Confidence 999999999987764
|
|
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-36 Score=332.07 Aligned_cols=202 Identities=25% Similarity=0.355 Sum_probs=169.8
Q ss_pred eEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCCh---hcccceEEEEccCCC-CCCCC
Q 001400 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFARISGYCEQNDI-HSPGL 917 (1085)
Q Consensus 842 ~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gy~~Q~~~-~~~~~ 917 (1085)
..+|+||||+|++||++||+|+||||||||+++|+|... +.+|+|.++|.++.. ..+++.+||++|++. .+...
T Consensus 17 ~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~ 94 (277)
T PRK13652 17 KEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILK--PTSGSVLIRGEPITKENIREVRKFVGLVFQNPDDQIFSP 94 (277)
T ss_pred CceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEECCcCCHHHHHhheEEEecCcccccccc
Confidence 459999999999999999999999999999999999866 568999999987542 345667999999974 33467
Q ss_pred CHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCC
Q 001400 918 TVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTS 997 (1085)
Q Consensus 918 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEPts 997 (1085)
||.||+.+..... ........+.++++++.+++.+..+... ..||+|||||++|||||+.+|++|||||||+
T Consensus 95 tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~Gq~qrl~laraL~~~p~llilDEPt~ 166 (277)
T PRK13652 95 TVEQDIAFGPINL---GLDEETVAHRVSSALHMLGLEELRDRVP-----HHLSGGEKKRVAIAGVIAMEPQVLVLDEPTA 166 (277)
T ss_pred cHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHCCChhHhcCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcc
Confidence 9999998764322 1233334456788999999977666543 5799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHC-CceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCC
Q 001400 998 GLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1085)
Q Consensus 998 gLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~ 1055 (1085)
|||+.++..+.+.++++.++ |.|||++||+++ ++.+.||++++|++ |++++.|+..
T Consensus 167 gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~-~~~~~~drv~~l~~-G~i~~~g~~~ 223 (277)
T PRK13652 167 GLDPQGVKELIDFLNDLPETYGMTVIFSTHQLD-LVPEMADYIYVMDK-GRIVAYGTVE 223 (277)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEEC-CeEEEECCHH
Confidence 99999999999999999765 899999999986 47788999999985 6889988754
|
|
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-36 Score=335.79 Aligned_cols=205 Identities=25% Similarity=0.358 Sum_probs=169.3
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCC----------------------
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEF---------------------- 205 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~---------------------- 205 (1085)
..+|+|+|+.|++||+++|+||||||||||+++|+|.++|+ +|+|+++|.+....
T Consensus 20 ~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (305)
T PRK13651 20 LKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPD---TGTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKK 96 (305)
T ss_pred ccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CcEEEEeceecccccccccccccccccccccccccc
Confidence 35999999999999999999999999999999999999876 89999998754210
Q ss_pred -----CCCceEEEEccCC-CCCCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchh
Q 001400 206 -----VPPRTSAYVSQQD-WQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTS 279 (1085)
Q Consensus 206 -----~~~~~~~yv~Q~d-~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~ 279 (1085)
..++.++||+|++ ..+...||+|||.|+....+... ....
T Consensus 97 ~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~----------------------------------~~~~ 142 (305)
T PRK13651 97 IKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSK----------------------------------EEAK 142 (305)
T ss_pred cchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCH----------------------------------HHHH
Confidence 1245799999985 34556799999998654322100 0012
Q ss_pred HHHHHHHHHhCCc-ccccccccCcccccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCC
Q 001400 280 LVVEYIMKILGLD-TCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDG 358 (1085)
Q Consensus 280 ~~~~~~l~~lgL~-~~~dt~vg~~~~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~ 358 (1085)
.+++++++.+||+ +..++. +..|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ . +
T Consensus 143 ~~~~~~l~~~gL~~~~~~~~-----~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~-~-g 215 (305)
T PRK13651 143 KRAAKYIELVGLDESYLQRS-----PFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNK-Q-G 215 (305)
T ss_pred HHHHHHHHHcCCChhhhhCC-----hhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-C-C
Confidence 2477889999996 555554 457999999999999999999999999999999999999999999999874 3 4
Q ss_pred EEEEEEecChhHHHhhcCeEEEecCCeEEEecChhhHH
Q 001400 359 TTVISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVL 396 (1085)
Q Consensus 359 t~ii~~~q~~~~~~~~~D~ii~L~~G~iv~~G~~~~~~ 396 (1085)
++|+.++|+.+++.+++|+|++|++|++++.|+++++.
T Consensus 216 ~tiiivtHd~~~~~~~adrv~vl~~G~i~~~g~~~~~~ 253 (305)
T PRK13651 216 KTIILVTHDLDNVLEWTKRTIFFKDGKIIKDGDTYDIL 253 (305)
T ss_pred CEEEEEeeCHHHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 55666889999999999999999999999999988864
|
|
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-36 Score=333.26 Aligned_cols=201 Identities=27% Similarity=0.335 Sum_probs=169.8
Q ss_pred eEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCCh---hcccceEEEEccCCC-CCCCC
Q 001400 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFARISGYCEQNDI-HSPGL 917 (1085)
Q Consensus 842 ~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gy~~Q~~~-~~~~~ 917 (1085)
+.+|+|+||+|++||++||+|+||||||||+++|+|... +.+|+|.++|.++.. ...++.+||++|++. .++..
T Consensus 20 ~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~--p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~~~ 97 (279)
T PRK13635 20 TYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLL--PEAGTITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGA 97 (279)
T ss_pred ccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCcEEEECCEECCcCcHHHHhhheEEEEeCHHHhcccc
Confidence 469999999999999999999999999999999999876 468999999987643 234567999999974 56678
Q ss_pred CHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCC
Q 001400 918 TVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTS 997 (1085)
Q Consensus 918 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEPts 997 (1085)
||.||+.+..... .....+..+.++++++.++|.+..+... ..||+|||||++|||||+.+|+||||||||+
T Consensus 98 tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LS~G~~qrv~laral~~~p~lllLDEPt~ 169 (279)
T PRK13635 98 TVQDDVAFGLENI---GVPREEMVERVDQALRQVGMEDFLNREP-----HRLSGGQKQRVAIAGVLALQPDIIILDEATS 169 (279)
T ss_pred cHHHHHhhhHhhC---CCCHHHHHHHHHHHHHHcCChhhhhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcc
Confidence 9999998764332 1223344556789999999987666543 4799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHC-CceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCC
Q 001400 998 GLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1085)
Q Consensus 998 gLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~ 1055 (1085)
|||+.++..+++.|+++.++ |.|||++||+++. + ..+|++++|.+ |++++.|+..
T Consensus 170 gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~-~-~~~d~i~~l~~-G~i~~~g~~~ 225 (279)
T PRK13635 170 MLDPRGRREVLETVRQLKEQKGITVLSITHDLDE-A-AQADRVIVMNK-GEILEEGTPE 225 (279)
T ss_pred cCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHH-H-HcCCEEEEEEC-CEEEEECCHH
Confidence 99999999999999999875 8999999999863 4 46999999985 6889988754
|
|
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-36 Score=343.31 Aligned_cols=209 Identities=27% Similarity=0.423 Sum_probs=175.8
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCC---CCceEEEEccCCCCCCCC
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV---PPRTSAYVSQQDWQVAEM 224 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~---~~~~~~yv~Q~d~~~~~l 224 (1085)
+++|+|+|+.|++||+++|+||||||||||||+|+|.++|. +|+|.++|.++.... .++.++||+|++.+++.+
T Consensus 16 ~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~---sG~I~l~G~~i~~~~~~~~~~~ig~v~q~~~l~~~~ 92 (402)
T PRK09536 16 TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPT---AGTVLVAGDDVEALSARAASRRVASVPQDTSLSFEF 92 (402)
T ss_pred EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCC---CcEEEECCEEcCcCCHHHHhcceEEEccCCCCCCCC
Confidence 46999999999999999999999999999999999999876 999999999876543 246799999999888999
Q ss_pred CHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCccc
Q 001400 225 TVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEML 304 (1085)
Q Consensus 225 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 304 (1085)
||+||+.++..... .++.. . ......+++++++.+||.+..++.+
T Consensus 93 tv~e~v~~~~~~~~--~~~~~-------------~---------------~~~~~~~v~~~le~vgl~~~~~~~~----- 137 (402)
T PRK09536 93 DVRQVVEMGRTPHR--SRFDT-------------W---------------TETDRAAVERAMERTGVAQFADRPV----- 137 (402)
T ss_pred CHHHHHHhccchhc--ccccC-------------C---------------CHHHHHHHHHHHHHcCCchhhcCCh-----
Confidence 99999988532110 00000 0 0011235788999999988777654
Q ss_pred ccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEecCC
Q 001400 305 KGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEG 384 (1085)
Q Consensus 305 ~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~~G 384 (1085)
+.|||||||||+|||||+.+|++|+|||||+|||+.++.++.+.|+++++ . +++|+.++|+.+++.++||++++|++|
T Consensus 138 ~~LSgGerQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~-~-g~TIIivsHdl~~~~~~adrii~l~~G 215 (402)
T PRK09536 138 TSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVD-D-GKTAVAAIHDLDLAARYCDELVLLADG 215 (402)
T ss_pred hhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHh-c-CCEEEEEECCHHHHHHhCCEEEEEECC
Confidence 46999999999999999999999999999999999999999999999975 3 456666889999999999999999999
Q ss_pred eEEEecChhhHH
Q 001400 385 QIVYQGPRVSVL 396 (1085)
Q Consensus 385 ~iv~~G~~~~~~ 396 (1085)
++++.|+++++.
T Consensus 216 ~iv~~G~~~ev~ 227 (402)
T PRK09536 216 RVRAAGPPADVL 227 (402)
T ss_pred EEEEecCHHHHh
Confidence 999999998764
|
|
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-36 Score=320.99 Aligned_cols=198 Identities=25% Similarity=0.377 Sum_probs=167.2
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCCCceEEEEccCCCCCCCCCHH
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVR 227 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 227 (1085)
+.+|+|+|+++++|++++|+|||||||||||++|+|.++|. +|+|.++|+++.. ..++.++|++|++.+++.+||+
T Consensus 13 ~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~-~~~~~i~~~~q~~~~~~~~tv~ 88 (210)
T cd03269 13 VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPD---SGEVLFDGKPLDI-AARNRIGYLPEERGLYPKMKVI 88 (210)
T ss_pred EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCCchhH-HHHccEEEeccCCcCCcCCcHH
Confidence 36999999999999999999999999999999999998776 9999999987653 2346799999999888889999
Q ss_pred HHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCcccccC
Q 001400 228 ETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGI 307 (1085)
Q Consensus 228 E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 307 (1085)
||+.+.....+... ......++++++.+||++..++.+ ..|
T Consensus 89 e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-----~~L 129 (210)
T cd03269 89 DQLVYLAQLKGLKK----------------------------------EEARRRIDEWLERLELSEYANKRV-----EEL 129 (210)
T ss_pred HHHHHHHHHcCCCh----------------------------------HHHHHHHHHHHHHcCChHHHhCcH-----hhC
Confidence 99987643321100 001123677899999987776654 469
Q ss_pred chhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEecCCeEE
Q 001400 308 SGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIV 387 (1085)
Q Consensus 308 SGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~~G~iv 387 (1085)
||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++.+. +.+|+.++|+.+++.+++|++++|++|+++
T Consensus 130 S~G~~qrl~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~--~~tii~~sH~~~~~~~~~d~i~~l~~g~i~ 207 (210)
T cd03269 130 SKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARA--GKTVILSTHQMELVEELCDRVLLLNKGRAV 207 (210)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHC--CCEEEEECCCHHHHHHhhhEEEEEeCCEEE
Confidence 999999999999999999999999999999999999999999988653 456666889999999999999999999998
Q ss_pred Eec
Q 001400 388 YQG 390 (1085)
Q Consensus 388 ~~G 390 (1085)
+.|
T Consensus 208 ~~~ 210 (210)
T cd03269 208 LYG 210 (210)
T ss_pred ecC
Confidence 764
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-36 Score=330.99 Aligned_cols=208 Identities=24% Similarity=0.346 Sum_probs=171.8
Q ss_pred CCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCCh---hcccceEEEEccCCCCCCC
Q 001400 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFARISGYCEQNDIHSPG 916 (1085)
Q Consensus 840 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gy~~Q~~~~~~~ 916 (1085)
++..+|+|+||++++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.++.. ..+++.++|++|++.+++.
T Consensus 18 ~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~ 95 (265)
T PRK10253 18 GKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMT--PAHGHVWLDGEHIQHYASKEVARRIGLLAQNATTPGD 95 (265)
T ss_pred CCEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCC--CCCcEEEECCEEhhhCCHHHHhhheEEeeccCcCCCC
Confidence 45679999999999999999999999999999999999876 468999999987532 2345679999999988888
Q ss_pred CCHHHHHHHhhhhcCC-CcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCC
Q 001400 917 LTVLESLLFSAWLRLP-SEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEP 995 (1085)
Q Consensus 917 ~tv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEP 995 (1085)
.|++||+.+......+ .....+.....++++++.+++.+..+... ..||+|||||++|||||+.+|++|+||||
T Consensus 96 ~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~Gq~qrv~laral~~~p~llllDEP 170 (265)
T PRK10253 96 ITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSV-----DTLSGGQRQRAWIAMVLAQETAIMLLDEP 170 (265)
T ss_pred CcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCc-----ccCChHHHHHHHHHHHHhcCCCEEEEeCc
Confidence 9999999875211100 00011223456788999999976655543 57999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHC-CceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCCC
Q 001400 996 TSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGS 1056 (1085)
Q Consensus 996 tsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~~ 1056 (1085)
|+|||+.++..+.+.|+++.++ |.|||++||+++ .+.+.+|++++|++ |++++.|+..+
T Consensus 171 t~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~-~~~~~~d~i~~l~~-G~i~~~g~~~~ 230 (265)
T PRK10253 171 TTWLDISHQIDLLELLSELNREKGYTLAAVLHDLN-QACRYASHLIALRE-GKIVAQGAPKE 230 (265)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCHHH
Confidence 9999999999999999998764 899999999986 47888999999985 78888887653
|
|
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-36 Score=335.95 Aligned_cols=216 Identities=22% Similarity=0.384 Sum_probs=173.9
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCC-------------------CCC
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEF-------------------VPP 208 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~-------------------~~~ 208 (1085)
..+|+|+|++|++|++++|+||||||||||+++|+|+++|. +|+|+++|.++.+. ..+
T Consensus 39 ~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~---~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (320)
T PRK13631 39 LVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSK---YGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELR 115 (320)
T ss_pred ccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCeEEECCEEcccccccccccccccccccchHHHHH
Confidence 35999999999999999999999999999999999999876 99999999876432 124
Q ss_pred ceEEEEccCC--CCCCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHH
Q 001400 209 RTSAYVSQQD--WQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIM 286 (1085)
Q Consensus 209 ~~~~yv~Q~d--~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l 286 (1085)
+.++||+|++ .+++ .||+||+.|+....+.. . .....++++++
T Consensus 116 ~~ig~v~Q~~~~~l~~-~tv~eni~~~~~~~~~~-~---------------------------------~~~~~~~~~~l 160 (320)
T PRK13631 116 RRVSMVFQFPEYQLFK-DTIEKDIMFGPVALGVK-K---------------------------------SEAKKLAKFYL 160 (320)
T ss_pred hcEEEEEECchhcccc-chHHHHHHhhHHhcCCC-H---------------------------------HHHHHHHHHHH
Confidence 6799999986 4454 59999998864321110 0 00112467789
Q ss_pred HHhCCc-ccccccccCcccccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEe
Q 001400 287 KILGLD-TCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLL 365 (1085)
Q Consensus 287 ~~lgL~-~~~dt~vg~~~~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~ 365 (1085)
+.+||+ ...++ .+.+|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++... +++|++++
T Consensus 161 ~~~gL~~~~~~~-----~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~--g~Tiiivt 233 (320)
T PRK13631 161 NKMGLDDSYLER-----SPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKAN--NKTVFVIT 233 (320)
T ss_pred HHcCCChhHhcC-----CcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHC--CCEEEEEe
Confidence 999996 34443 34579999999999999999999999999999999999999999999988653 45666688
Q ss_pred cChhHHHhhcCeEEEecCCeEEEecChhhHH---HHHHhCCCCCCC
Q 001400 366 QPAPEAYELFDDVILLSEGQIVYQGPRVSVL---DFFASMGFSCPK 408 (1085)
Q Consensus 366 q~~~~~~~~~D~ii~L~~G~iv~~G~~~~~~---~~f~~~G~~~p~ 408 (1085)
|+.+++..++|+|++|++|++++.|+++++. +.++..|+.+|.
T Consensus 234 Hd~~~~~~~adri~vl~~G~i~~~g~~~~~~~~~~~~~~~~~~~p~ 279 (320)
T PRK13631 234 HTMEHVLEVADEVIVMDKGKILKTGTPYEIFTDQHIINSTSIQVPR 279 (320)
T ss_pred cCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcCHHHHHHcCCCCCh
Confidence 9999999999999999999999999998764 234445555544
|
|
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-36 Score=332.86 Aligned_cols=201 Identities=26% Similarity=0.353 Sum_probs=165.9
Q ss_pred eEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCCh-------hcccceEEEEccCC--C
Q 001400 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ-------ETFARISGYCEQND--I 912 (1085)
Q Consensus 842 ~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~-------~~~~~~~gy~~Q~~--~ 912 (1085)
..+|+||||+|++|++++|+|+||||||||+++|+|... +.+|+|.++|.++.. ..+++.++|++|++ .
T Consensus 20 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~~~q~~~~~ 97 (280)
T PRK13649 20 GRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHV--PTQGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQ 97 (280)
T ss_pred cceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEccccccccCHHHHHhheEEEeeChhhh
Confidence 359999999999999999999999999999999999866 468999999987532 23456799999986 3
Q ss_pred CCCCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCc-ccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEE
Q 001400 913 HSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTS-LSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVF 991 (1085)
Q Consensus 913 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~ill 991 (1085)
++ ..|++||+.+...... .......+.++++++.+++.. ..+.. +..||+|||||++|||||+.+|++||
T Consensus 98 ~~-~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LSgG~~qrv~la~al~~~p~lll 168 (280)
T PRK13649 98 LF-EETVLKDVAFGPQNFG---VSQEEAEALAREKLALVGISESLFEKN-----PFELSGGQMRRVAIAGILAMEPKILV 168 (280)
T ss_pred hc-cccHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCChhhhhCC-----cccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 44 4699999987643221 122333455778899998863 44433 35799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCC
Q 001400 992 MDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1085)
Q Consensus 992 lDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~ 1055 (1085)
|||||+|||+.++..+.+.|++++++|+|||++||+++ .+.+.+|++++|++ |++++.|+..
T Consensus 169 LDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~-G~i~~~g~~~ 230 (280)
T PRK13649 169 LDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMD-DVANYADFVYVLEK-GKLVLSGKPK 230 (280)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHH-HHHHhCCEEEEEEC-CEEEEeCCHH
Confidence 99999999999999999999999777999999999986 46678999999985 7888888754
|
|
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-36 Score=332.18 Aligned_cols=205 Identities=25% Similarity=0.338 Sum_probs=169.1
Q ss_pred cCCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCCh-----hcccceEEEEccCCCC
Q 001400 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ-----ETFARISGYCEQNDIH 913 (1085)
Q Consensus 839 ~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~-----~~~~~~~gy~~Q~~~~ 913 (1085)
+++..+|+|+||+|++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.++.. ...++.+||++|++..
T Consensus 11 ~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~ 88 (271)
T PRK13638 11 YQDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLR--PQKGAVLWQGKPLDYSKRGLLALRQQVATVFQDPEQ 88 (271)
T ss_pred cCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--CCccEEEECCEEcccccCCHHHHHhheEEEeeChhh
Confidence 344569999999999999999999999999999999999876 568999999987531 2345679999998753
Q ss_pred -CCCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q 001400 914 -SPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFM 992 (1085)
Q Consensus 914 -~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illl 992 (1085)
....|+.||+.+....+ ........+.++++++.+++.+..+.. +..||||||||++|||||+.+|+||||
T Consensus 89 ~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qrl~laraL~~~p~lllL 160 (271)
T PRK13638 89 QIFYTDIDSDIAFSLRNL---GVPEAEITRRVDEALTLVDAQHFRHQP-----IQCLSHGQKKRVAIAGALVLQARYLLL 160 (271)
T ss_pred ccccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHhHhcCC-----chhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 34568999998754322 112233345578899999987766553 357999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCC
Q 001400 993 DEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1085)
Q Consensus 993 DEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~ 1055 (1085)
||||+|||+.++..+.+.|+++.++|.|||++||+++ .+.+.+|++++|++ |++++.|+..
T Consensus 161 DEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~-~~~~~~d~i~~l~~-G~i~~~g~~~ 221 (271)
T PRK13638 161 DEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDID-LIYEISDAVYVLRQ-GQILTHGAPG 221 (271)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCHH
Confidence 9999999999999999999998777999999999986 46678999999985 7888888753
|
|
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-36 Score=323.21 Aligned_cols=202 Identities=26% Similarity=0.400 Sum_probs=168.2
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCC----CceEEEEccCCCCCCC
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP----PRTSAYVSQQDWQVAE 223 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 223 (1085)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|. +|+|.++|.++..... ++.++|++|++.+++.
T Consensus 13 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 89 (222)
T cd03224 13 SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPR---SGSIRFDGRDITGLPPHERARAGIGYVPEGRRIFPE 89 (222)
T ss_pred eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcCCCCHHHHHhcCeEEeccccccCCC
Confidence 36999999999999999999999999999999999998876 9999999988754332 3569999999988999
Q ss_pred CCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHh-CCcccccccccCc
Q 001400 224 MTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKIL-GLDTCADTLVGDE 302 (1085)
Q Consensus 224 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~l-gL~~~~dt~vg~~ 302 (1085)
+||+||+.+.....+ . . +....++.+++.+ ++++..++.+
T Consensus 90 ~t~~~~l~~~~~~~~--~--~--------------------------------~~~~~~~~~l~~~~~l~~~~~~~~--- 130 (222)
T cd03224 90 LTVEENLLLGAYARR--R--A--------------------------------KRKARLERVYELFPRLKERRKQLA--- 130 (222)
T ss_pred CcHHHHHHHHhhhcC--c--h--------------------------------hHHHHHHHHHHHHHhhhhhhhCch---
Confidence 999999988643221 0 0 0011245566666 4666555544
Q ss_pred ccccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEec
Q 001400 303 MLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLS 382 (1085)
Q Consensus 303 ~~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~ 382 (1085)
+.|||||||||+|||||+.+|++++|||||+|||+.++..+.+.|++++. . +++|+.++|+.+++.+++|++++|+
T Consensus 131 --~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~-~~tiii~sH~~~~~~~~~d~i~~l~ 206 (222)
T cd03224 131 --GTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRD-E-GVTILLVEQNARFALEIADRAYVLE 206 (222)
T ss_pred --hhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHH-C-CCEEEEEeCCHHHHHHhccEEEEee
Confidence 46999999999999999999999999999999999999999999999875 3 4566668888999999999999999
Q ss_pred CCeEEEecChhhH
Q 001400 383 EGQIVYQGPRVSV 395 (1085)
Q Consensus 383 ~G~iv~~G~~~~~ 395 (1085)
+|++++.|+.+++
T Consensus 207 ~G~i~~~~~~~~~ 219 (222)
T cd03224 207 RGRVVLEGTAAEL 219 (222)
T ss_pred CCeEEEeCCHHHH
Confidence 9999999987765
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=319.48 Aligned_cols=203 Identities=24% Similarity=0.312 Sum_probs=182.5
Q ss_pred eEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCCh-------hcccceEEEEccCCCCC
Q 001400 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ-------ETFARISGYCEQNDIHS 914 (1085)
Q Consensus 842 ~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~-------~~~~~~~gy~~Q~~~~~ 914 (1085)
..-++|+||+|+.||++.|||-||||||||+++|.++.. +..|+|.++|.++.. .-+++.+++|||+..++
T Consensus 41 vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLie--pt~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLl 118 (386)
T COG4175 41 VVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIE--PTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALL 118 (386)
T ss_pred EEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCC--CCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccc
Confidence 446789999999999999999999999999999999877 679999999987532 22456799999999999
Q ss_pred CCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Q 001400 915 PGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDE 994 (1085)
Q Consensus 915 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDE 994 (1085)
|..||.||+.|+..++ .++.+++++.+.++++.+||.+..+.+. ++||||+||||.|||||+.+|+||+|||
T Consensus 119 PhrtVl~Nv~fGLev~---Gv~~~er~~~a~~~l~~VgL~~~~~~yp-----~eLSGGMqQRVGLARAla~~~~IlLMDE 190 (386)
T COG4175 119 PHRTVLENVAFGLEVQ---GVPKAEREERALEALELVGLEGYADKYP-----NELSGGMQQRVGLARALANDPDILLMDE 190 (386)
T ss_pred cchhHhhhhhcceeec---CCCHHHHHHHHHHHHHHcCchhhhhcCc-----ccccchHHHHHHHHHHHccCCCEEEecC
Confidence 9999999999997765 4667888899999999999999988764 6899999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHC-CceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCCC
Q 001400 995 PTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGS 1056 (1085)
Q Consensus 995 PtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~~ 1056 (1085)
|+|+|||--+..+++.|.++.++ ++|||+||||++ +.++.-|||.+|+ +|+++..|...+
T Consensus 191 aFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLd-EAlriG~rIaimk-dG~ivQ~Gtp~e 251 (386)
T COG4175 191 AFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLD-EALRIGDRIAIMK-DGEIVQVGTPEE 251 (386)
T ss_pred chhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHH-HHHhccceEEEec-CCeEEEeCCHHH
Confidence 99999999999999999998754 899999999997 6889999999998 589999998754
|
|
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=327.76 Aligned_cols=211 Identities=22% Similarity=0.277 Sum_probs=169.7
Q ss_pred cCCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCC---eeeeEEEEcCccCC-----hhcccceEEEEccC
Q 001400 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGG---IIEGDIYISGYPKR-----QETFARISGYCEQN 910 (1085)
Q Consensus 839 ~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~---~~~G~i~i~g~~~~-----~~~~~~~~gy~~Q~ 910 (1085)
+++..+|+|+||+|++||++||+|+||||||||+++|+|..++. +.+|+|.++|.++. ...+++.+||++|+
T Consensus 14 ~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~~~~i~~~~q~ 93 (258)
T PRK14241 14 YGSFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAVRRTIGMVFQR 93 (258)
T ss_pred ECCEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHHHhcceEEEccc
Confidence 34457999999999999999999999999999999999976421 25899999998753 12345679999999
Q ss_pred CCCCCCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcc-cccccCCCCCCCCCHHHHHHHHHHHHHhcCCCE
Q 001400 911 DIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSL-SGALIGLPGINGLSTEQRKRLTIAVELVANPSI 989 (1085)
Q Consensus 911 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~i 989 (1085)
+.+++.+|++||+.+....+. .......++.++++++.+++.+. .+... ..+.+||+|||||++|||||+.+|++
T Consensus 94 ~~~~~~~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--~~~~~LS~G~~qrv~laral~~~p~l 169 (258)
T PRK14241 94 PNPFPTMSIRDNVVAGLKLNG--VRNKKDLDELVEKSLRGANLWNEVKDRLD--KPGGGLSGGQQQRLCIARAIAVEPDV 169 (258)
T ss_pred cccCCCCcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhhHhh--CCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 988999999999987653321 11223344567888988887421 11111 12357999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEec-----CcEEEEecCCC
Q 001400 990 VFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKR-----GGELIYAGPLG 1055 (1085)
Q Consensus 990 lllDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~-----gG~~~~~g~~~ 1055 (1085)
|||||||+|||+.++..+.+.|++++ +++|||++||+++ ++.+.+|++++|++ .|++++.|+..
T Consensus 170 lllDEPt~~LD~~~~~~l~~~l~~~~-~~~tviivsH~~~-~~~~~~d~i~~l~~~~~~~~g~i~~~~~~~ 238 (258)
T PRK14241 170 LLMDEPCSALDPISTLAIEDLINELK-QDYTIVIVTHNMQ-QAARVSDQTAFFNLEATGKPGRLVEIDDTE 238 (258)
T ss_pred EEEcCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEecCHH-HHHHhCCEEEEEecccCCCCceEEecCCHH
Confidence 99999999999999999999999985 4789999999986 47788999999973 57999988753
|
|
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-36 Score=341.54 Aligned_cols=208 Identities=22% Similarity=0.279 Sum_probs=175.5
Q ss_pred cceeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCc----cCCCCCC-------CceEEEE
Q 001400 146 SKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGH----GFKEFVP-------PRTSAYV 214 (1085)
Q Consensus 146 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~----~~~~~~~-------~~~~~yv 214 (1085)
....+|+|+|+.|++||+++|+||||||||||+++|+|.++|. +|+|+++|. ++..... ++.++||
T Consensus 35 g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~---~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~v 111 (382)
T TIGR03415 35 GLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVS---RGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMV 111 (382)
T ss_pred CCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CcEEEECCEecccccccCCHHHHHHHhcCCEEEE
Confidence 3467999999999999999999999999999999999999876 999999996 3322211 2479999
Q ss_pred ccCCCCCCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCccc
Q 001400 215 SQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTC 294 (1085)
Q Consensus 215 ~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~ 294 (1085)
+|++.+++.+||+||+.|+....+... .+.+..++++++.+||++.
T Consensus 112 fQ~~~l~p~~Tv~eNi~~~~~~~g~~~----------------------------------~~~~~~a~e~le~vgL~~~ 157 (382)
T TIGR03415 112 FQKFALMPWLTVEENVAFGLEMQGMPE----------------------------------AERRKRVDEQLELVGLAQW 157 (382)
T ss_pred ECCCcCCCCCcHHHHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCCchh
Confidence 999999999999999998754332110 0012247788999999887
Q ss_pred ccccccCcccccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhh
Q 001400 295 ADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYEL 374 (1085)
Q Consensus 295 ~dt~vg~~~~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~ 374 (1085)
.|..+ ..|||||||||+|||||+.+|+||+|||||+|||+.++.++.+.|+++.+..+ ++|+.++|+.+++.++
T Consensus 158 ~~~~~-----~~LSgGq~QRV~LARALa~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~-~TII~iTHdl~e~~~l 231 (382)
T TIGR03415 158 ADKKP-----GELSGGMQQRVGLARAFAMDADILLMDEPFSALDPLIRTQLQDELLELQAKLN-KTIIFVSHDLDEALKI 231 (382)
T ss_pred hcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhcC-CEEEEEeCCHHHHHHh
Confidence 77655 46999999999999999999999999999999999999999999999876444 5566688999999999
Q ss_pred cCeEEEecCCeEEEecChhhHH
Q 001400 375 FDDVILLSEGQIVYQGPRVSVL 396 (1085)
Q Consensus 375 ~D~ii~L~~G~iv~~G~~~~~~ 396 (1085)
+|+|++|++|+++..|+++++.
T Consensus 232 ~DrI~vl~~G~iv~~g~~~ei~ 253 (382)
T TIGR03415 232 GNRIAIMEGGRIIQHGTPEEIV 253 (382)
T ss_pred CCEEEEEECCEEEEecCHHHHh
Confidence 9999999999999999988774
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-36 Score=328.90 Aligned_cols=209 Identities=27% Similarity=0.378 Sum_probs=171.8
Q ss_pred cCCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCCh---hcccceEEEEccCCCCCC
Q 001400 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFARISGYCEQNDIHSP 915 (1085)
Q Consensus 839 ~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gy~~Q~~~~~~ 915 (1085)
+++..+|+|+||++++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.+... ...++.++|++|++.+++
T Consensus 11 ~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~ 88 (256)
T TIGR03873 11 AGGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALR--PDAGTVDLAGVDLHGLSRRARARRVALVEQDSDTAV 88 (256)
T ss_pred ECCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC--CCCCEEEECCEEcccCCHHHHhhheEEecccCccCC
Confidence 345679999999999999999999999999999999999866 468999999987542 234557999999987778
Q ss_pred CCCHHHHHHHhhh-hcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Q 001400 916 GLTVLESLLFSAW-LRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDE 994 (1085)
Q Consensus 916 ~~tv~e~l~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDE 994 (1085)
..||+||+.+... .+...........+.+.++++.+++.+..+... ..||+|||||++|||||+.+|++++|||
T Consensus 89 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~la~al~~~p~llllDE 163 (256)
T TIGR03873 89 PLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDM-----STLSGGERQRVHVARALAQEPKLLLLDE 163 (256)
T ss_pred CCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 8999999987521 100000111223346788999999876665543 5799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCCC
Q 001400 995 PTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGS 1056 (1085)
Q Consensus 995 PtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~~ 1056 (1085)
||+|||+.++..+++.|+++.++|.|||++||+++ .+.+.+|++++|++ |+++..|+..+
T Consensus 164 Pt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~g~~~~ 223 (256)
T TIGR03873 164 PTNHLDVRAQLETLALVRELAATGVTVVAALHDLN-LAASYCDHVVVLDG-GRVVAAGPPRE 223 (256)
T ss_pred ccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeC-CCEEEecCHHH
Confidence 99999999999999999999777899999999987 47788999999985 68888887653
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-36 Score=289.82 Aligned_cols=200 Identities=30% Similarity=0.397 Sum_probs=170.8
Q ss_pred ccCCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCCh-------hcccceEEEEccC
Q 001400 838 LEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ-------ETFARISGYCEQN 910 (1085)
Q Consensus 838 ~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~-------~~~~~~~gy~~Q~ 910 (1085)
..+...+|++|++.|++||.+||+|||||||||||-+|+|... +.+|+|.+.|++... .-+.+.+|+|+|.
T Consensus 19 ~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~--~ssGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQS 96 (228)
T COG4181 19 GEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDD--PSSGEVRLLGQPLHKLDEDARAALRARHVGFVFQS 96 (228)
T ss_pred CCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCC--CCCceEEEcCcchhhcCHHHHHHhhccceeEEEEe
Confidence 3466789999999999999999999999999999999999877 568999999998642 1245679999999
Q ss_pred CCCCCCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEE
Q 001400 911 DIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIV 990 (1085)
Q Consensus 911 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~il 990 (1085)
..+.|++|..||+.....++... .........+.++.+||.+..+.+. .+|||||+|||+||||++..|+||
T Consensus 97 F~Lip~ltAlENV~lPleL~ge~---~~~~~~~A~~lL~~vGLg~Rl~HyP-----~qLSGGEQQRVAiARAfa~~P~vL 168 (228)
T COG4181 97 FHLIPNLTALENVALPLELRGES---SADSRAGAKALLEAVGLGKRLTHYP-----AQLSGGEQQRVALARAFAGRPDVL 168 (228)
T ss_pred eeccccchhhhhccchhhhcCCc---cccHHHHHHHHHHHhCcccccccCc-----cccCchHHHHHHHHHHhcCCCCEE
Confidence 99999999999999887776421 1223344678899999987665543 589999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHH-CCceEEEEecCccHHHHHhcCEEEEEecCcEEEE
Q 001400 991 FMDEPTSGLDARAAAIVMRTVRNIVN-TGRTIVCTIHQPSIDIFESFDELLFMKRGGELIY 1050 (1085)
Q Consensus 991 llDEPtsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~ 1050 (1085)
|.||||-+||.++...|.+++-.+.. .|.|.|++||||. +...|||.+-|.+ |+++.
T Consensus 169 fADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~--LA~Rc~R~~r~~~-G~l~~ 226 (228)
T COG4181 169 FADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQ--LAARCDRQLRLRS-GRLVE 226 (228)
T ss_pred eccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHH--HHHhhhheeeeec-ceecc
Confidence 99999999999999999999998864 5999999999985 6778999999986 67764
|
|
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-36 Score=326.52 Aligned_cols=213 Identities=27% Similarity=0.395 Sum_probs=172.0
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCC------CCceEEEEccCCCCC
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV------PPRTSAYVSQQDWQV 221 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~------~~~~~~yv~Q~d~~~ 221 (1085)
+.+|+|+|+++++|++++|+||||||||||+++|+|.++|. +|+|.++|.++.... .++.++|++|++.++
T Consensus 14 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 90 (241)
T cd03256 14 KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPT---SGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLI 90 (241)
T ss_pred cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---CceEEECCEeccccCHhHHHHHHhccEEEcccCccc
Confidence 46999999999999999999999999999999999998776 999999998876432 135799999999888
Q ss_pred CCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccC
Q 001400 222 AEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGD 301 (1085)
Q Consensus 222 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 301 (1085)
+.+||+||+.++..... .... . ..+... ......++.+++.+||.+..++.+
T Consensus 91 ~~~tv~~~l~~~~~~~~--~~~~---~------~~~~~~---------------~~~~~~~~~~l~~~~l~~~~~~~~-- 142 (241)
T cd03256 91 ERLSVLENVLSGRLGRR--STWR---S------LFGLFP---------------KEEKQRALAALERVGLLDKAYQRA-- 142 (241)
T ss_pred ccCcHHHHHHhhhcccc--hhhh---h------hcccCc---------------HHHHHHHHHHHHHcCChhhhCCCc--
Confidence 99999999987532110 0000 0 000000 001234677899999987666544
Q ss_pred cccccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEe
Q 001400 302 EMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILL 381 (1085)
Q Consensus 302 ~~~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L 381 (1085)
..|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++++.. +++|+.++|+.+++..++|++++|
T Consensus 143 ---~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~-~~tii~~tH~~~~~~~~~d~v~~l 218 (241)
T cd03256 143 ---DQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREE-GITVIVSLHQVDLAREYADRIVGL 218 (241)
T ss_pred ---ccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEE
Confidence 5699999999999999999999999999999999999999999999987543 445666888899999999999999
Q ss_pred cCCeEEEecChhhH
Q 001400 382 SEGQIVYQGPRVSV 395 (1085)
Q Consensus 382 ~~G~iv~~G~~~~~ 395 (1085)
++|++++.|+++++
T Consensus 219 ~~G~i~~~~~~~~~ 232 (241)
T cd03256 219 KDGRIVFDGPPAEL 232 (241)
T ss_pred ECCEEEeecCHHHh
Confidence 99999999998775
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=320.14 Aligned_cols=215 Identities=22% Similarity=0.310 Sum_probs=179.4
Q ss_pred ceeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhC-C-CCceeeEEEECCccCCCCC-------CCceEEEEccC
Q 001400 147 KLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLG-H-HLQVSGKITYNGHGFKEFV-------PPRTSAYVSQQ 217 (1085)
Q Consensus 147 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~-~-~~~~~G~i~~~G~~~~~~~-------~~~~~~yv~Q~ 217 (1085)
...+++||||.+++||+++|+|.|||||||+.++|+|+++ + ....+|+|.++|.++-.+. ..+.++||+|+
T Consensus 17 ~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~mIfQ~ 96 (316)
T COG0444 17 VVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQD 96 (316)
T ss_pred cEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHHHHhhcCceEEEEEcC
Confidence 4679999999999999999999999999999999999997 4 3457899999999765443 23589999999
Q ss_pred C--CCCCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccc
Q 001400 218 D--WQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCA 295 (1085)
Q Consensus 218 d--~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~ 295 (1085)
+ .+.|.+||.+.+.-..+.+.... . ..+...++.++|+.+||++-.
T Consensus 97 p~~sLnPv~~Ig~Qi~E~l~~h~~~~--------~------------------------~~ea~~~a~~~L~~Vgi~~~~ 144 (316)
T COG0444 97 PMTSLNPVMTIGDQIAEVLRLHGKGL--------S------------------------KKEAKERAIELLELVGIPDPE 144 (316)
T ss_pred chhhcCChhhHHHHHHHHHHHhhcch--------h------------------------hHHHHHHHHHHHHHcCCCCHH
Confidence 6 57888999998866544321100 0 011233577889999998743
Q ss_pred cccccCcccccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhc
Q 001400 296 DTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELF 375 (1085)
Q Consensus 296 dt~vg~~~~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~ 375 (1085)
. +-+.+..+|||||||||.||.||+.+|++|+.||||++||..++.+|++.|+++.++ .+++++.++|+..-+.++|
T Consensus 145 ~--~~~~YPhelSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e-~~~aiilITHDl~vva~~a 221 (316)
T COG0444 145 R--RLKSYPHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQRE-KGTALILITHDLGVVAEIA 221 (316)
T ss_pred H--HHhhCCcccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhc
Confidence 2 235677899999999999999999999999999999999999999999999999885 4677888999999999999
Q ss_pred CeEEEecCCeEEEecChhhHH
Q 001400 376 DDVILLSEGQIVYQGPRVSVL 396 (1085)
Q Consensus 376 D~ii~L~~G~iv~~G~~~~~~ 396 (1085)
|||+||+.|+||+.|+.+++.
T Consensus 222 Dri~VMYaG~iVE~g~~~~i~ 242 (316)
T COG0444 222 DRVAVMYAGRIVEEGPVEEIF 242 (316)
T ss_pred ceEEEEECcEEEEeCCHHHHh
Confidence 999999999999999998874
|
|
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=321.17 Aligned_cols=196 Identities=27% Similarity=0.381 Sum_probs=163.7
Q ss_pred eEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCChh---c---c-cceEEEEccCCCCC
Q 001400 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE---T---F-ARISGYCEQNDIHS 914 (1085)
Q Consensus 842 ~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~---~---~-~~~~gy~~Q~~~~~ 914 (1085)
..+|+|+||+|++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.+.... . . ++.++|++|++.++
T Consensus 23 ~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~l~ 100 (228)
T PRK10584 23 LSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDD--GSSGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFMLI 100 (228)
T ss_pred eEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC--CCCeeEEECCEEcccCCHHHHHHHHhheEEEEEcccccC
Confidence 369999999999999999999999999999999999866 4689999999875421 1 1 35799999999888
Q ss_pred CCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Q 001400 915 PGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDE 994 (1085)
Q Consensus 915 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDE 994 (1085)
+.+|+.||+.+....+. .......+.+.++++.+++.+..+..+ ..||+|||||++|||||+.+|++|||||
T Consensus 101 ~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~Ge~qrl~la~al~~~p~llllDE 172 (228)
T PRK10584 101 PTLNALENVELPALLRG---ESSRQSRNGAKALLEQLGLGKRLDHLP-----AQLSGGEQQRVALARAFNGRPDVLFADE 172 (228)
T ss_pred CCcCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCHhHhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 89999999987643321 122334456788999999876655443 4799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHC-CceEEEEecCccHHHHHhcCEEEEEecCcEEEE
Q 001400 995 PTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIY 1050 (1085)
Q Consensus 995 PtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~ 1050 (1085)
||+|||+.++..+.+.|++++++ |.|||++||+++ .+ +.+|++++|++ |++++
T Consensus 173 Pt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~-~~~d~i~~l~~-g~i~~ 226 (228)
T PRK10584 173 PTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQ-LA-ARCDRRLRLVN-GQLQE 226 (228)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEEC-CEEEe
Confidence 99999999999999999998754 899999999986 34 56999999985 67754
|
|
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=325.72 Aligned_cols=210 Identities=23% Similarity=0.288 Sum_probs=166.9
Q ss_pred cCCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCC---CCCeeeeEEEEcCccCCh-----hcccceEEEEccC
Q 001400 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRK---TGGIIEGDIYISGYPKRQ-----ETFARISGYCEQN 910 (1085)
Q Consensus 839 ~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~---~~~~~~G~i~i~g~~~~~-----~~~~~~~gy~~Q~ 910 (1085)
+++..+|+|+||+|++||+++|+|+||||||||+++|+|.. ++.+.+|+|.++|.++.. ..+++.++|++|+
T Consensus 13 ~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~ 92 (250)
T PRK14245 13 YGDFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDELRKNVGMVFQR 92 (250)
T ss_pred ECCEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHHHHhhheEEEecC
Confidence 34567999999999999999999999999999999999952 211247999999987642 2345679999999
Q ss_pred CCCCCCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEE
Q 001400 911 DIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIV 990 (1085)
Q Consensus 911 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~il 990 (1085)
+.+++ .|++||+.+....+.. .......+.++++++.+++.+........ .+..||+|||||++|||||+.+|++|
T Consensus 93 ~~~~~-~tv~~nl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-~~~~LS~G~~qrv~laral~~~p~ll 168 (250)
T PRK14245 93 PNPFP-KSIFENVAYGLRVNGV--KDNAFIRQRVEETLKGAALWDEVKDKLKE-SAFALSGGQQQRLCIARAMAVSPSVL 168 (250)
T ss_pred CccCc-ccHHHHHHHHHHHcCC--CcHHHHHHHHHHHHHHcCCCcchhhhhhC-CcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 88876 5999999876433211 11122345578889988885421111111 23579999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCC
Q 001400 991 FMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1085)
Q Consensus 991 llDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~ 1055 (1085)
||||||+|||+.++..+.+.|+++. +++|||++||+++ ++.+.||++++|++ |++++.|+..
T Consensus 169 lLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiivtH~~~-~~~~~~d~v~~l~~-G~~~~~~~~~ 230 (250)
T PRK14245 169 LMDEPASALDPISTAKVEELIHELK-KDYTIVIVTHNMQ-QAARVSDKTAFFYM-GEMVEYDDTK 230 (250)
T ss_pred EEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHhhCCEEEEEEC-CEEEEECCHH
Confidence 9999999999999999999999985 5899999999986 47788999999985 7899998754
|
|
| >cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-36 Score=313.70 Aligned_cols=173 Identities=61% Similarity=0.993 Sum_probs=151.0
Q ss_pred eEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCChhcccceEEEEccCCCCCCCCCHHH
Q 001400 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLE 921 (1085)
Q Consensus 842 ~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gy~~Q~~~~~~~~tv~e 921 (1085)
..+|+|+||++++||+++|+|+||||||||+++|+|.....+.+|+|.++|.++. ..+++.++|++|++.+++.+|++|
T Consensus 20 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~-~~~~~~i~~~~q~~~~~~~~tv~~ 98 (192)
T cd03232 20 RQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLD-KNFQRSTGYVEQQDVHSPNLTVRE 98 (192)
T ss_pred eEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehH-HHhhhceEEecccCccccCCcHHH
Confidence 5699999999999999999999999999999999996432246899999998764 345667999999998889999999
Q ss_pred HHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCH
Q 001400 922 SLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDA 1001 (1085)
Q Consensus 922 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEPtsgLD~ 1001 (1085)
|+.+.... + .||+|||||++|||||+.+|++|+|||||+|||+
T Consensus 99 ~l~~~~~~-------------------~------------------~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~ 141 (192)
T cd03232 99 ALRFSALL-------------------R------------------GLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDS 141 (192)
T ss_pred HHHHHHHH-------------------h------------------cCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCH
Confidence 99864210 0 4999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEecCcEEEEec
Q 001400 1002 RAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAG 1052 (1085)
Q Consensus 1002 ~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g 1052 (1085)
.++..+++.|+++++.|+|||++||+++.++.+.+|++++|+++|++++.|
T Consensus 142 ~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 142 QAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred HHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 999999999999877799999999998633567899999998657888765
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-36 Score=317.72 Aligned_cols=192 Identities=23% Similarity=0.357 Sum_probs=161.8
Q ss_pred cCCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCC---h----hcccceEEEEccCC
Q 001400 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKR---Q----ETFARISGYCEQND 911 (1085)
Q Consensus 839 ~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~---~----~~~~~~~gy~~Q~~ 911 (1085)
+++..+|+|+||+|++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.++. . ...++.++|++|++
T Consensus 8 ~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~ 85 (206)
T TIGR03608 8 FGDKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEK--FDSGQVYLNGKETPPLNSKKASKFRREKLGYLFQNF 85 (206)
T ss_pred ECCEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEccccchhhHHHHHHhCeeEEecch
Confidence 345679999999999999999999999999999999999876 56899999998742 1 12456799999999
Q ss_pred CCCCCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEE
Q 001400 912 IHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVF 991 (1085)
Q Consensus 912 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~ill 991 (1085)
.+++..|++||+.+....+ ........+.++++++.+++.+..+... .+||+|||||++|||||+.+|++||
T Consensus 86 ~~~~~~t~~e~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS~G~~qr~~laral~~~p~lll 157 (206)
T TIGR03608 86 ALIENETVEENLDLGLKYK---KLSKKEKREKKKEALEKVGLNLKLKQKI-----YELSGGEQQRVALARAILKDPPLIL 157 (206)
T ss_pred hhccCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCchhhhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEE
Confidence 9888899999998864322 1222334456788999999977666543 4799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEE
Q 001400 992 MDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFM 1042 (1085)
Q Consensus 992 lDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l 1042 (1085)
|||||+|||+.++..+.+.|+++.++|.|||++||+++ ..+.+|++++|
T Consensus 158 lDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~--~~~~~d~i~~l 206 (206)
T TIGR03608 158 ADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPE--VAKQADRVIEL 206 (206)
T ss_pred EeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--HHhhcCEEEeC
Confidence 99999999999999999999998777999999999985 34679999875
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. |
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-36 Score=330.82 Aligned_cols=203 Identities=28% Similarity=0.306 Sum_probs=170.1
Q ss_pred eecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCC---CCceEEEEccCCC-CCCCC
Q 001400 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV---PPRTSAYVSQQDW-QVAEM 224 (1085)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~---~~~~~~yv~Q~d~-~~~~l 224 (1085)
.+|+|+|++|++|++++|+||||||||||+++|+|.++|. +|+|.++|.++.... .++.++|++|++. .++.+
T Consensus 19 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~ 95 (274)
T PRK13647 19 KALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQ---RGRVKVMGREVNAENEKWVRSKVGLVFQDPDDQVFSS 95 (274)
T ss_pred eeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---ceEEEECCEECCCCCHHHHHhhEEEEecChhhhhccC
Confidence 5999999999999999999999999999999999999876 999999999875432 1357999999963 45678
Q ss_pred CHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCccc
Q 001400 225 TVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEML 304 (1085)
Q Consensus 225 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 304 (1085)
||+||+.|+....+... ......++++++.+||.+..++.+
T Consensus 96 tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~L~~~~~~~~----- 136 (274)
T PRK13647 96 TVWDDVAFGPVNMGLDK----------------------------------DEVERRVEEALKAVRMWDFRDKPP----- 136 (274)
T ss_pred cHHHHHHhhHHHcCCCH----------------------------------HHHHHHHHHHHHHCCCHHHhcCCh-----
Confidence 99999988643221100 001224778899999987777655
Q ss_pred ccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEecCC
Q 001400 305 KGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEG 384 (1085)
Q Consensus 305 ~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~~G 384 (1085)
..|||||||||+||+||+.+|++|+|||||+|||+.++.++.+.|+++++. +++|+.++|+.+++.+++|+|++|++|
T Consensus 137 ~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~--g~tili~tH~~~~~~~~~d~i~~l~~G 214 (274)
T PRK13647 137 YHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQ--GKTVIVATHDVDLAAEWADQVIVLKEG 214 (274)
T ss_pred hhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 469999999999999999999999999999999999999999999998753 455666889999999999999999999
Q ss_pred eEEEecChhhH
Q 001400 385 QIVYQGPRVSV 395 (1085)
Q Consensus 385 ~iv~~G~~~~~ 395 (1085)
++++.|+++++
T Consensus 215 ~i~~~g~~~~~ 225 (274)
T PRK13647 215 RVLAEGDKSLL 225 (274)
T ss_pred EEEEECCHHHh
Confidence 99999998654
|
|
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-35 Score=327.45 Aligned_cols=205 Identities=22% Similarity=0.270 Sum_probs=166.1
Q ss_pred CCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCC---eeeeEEEEcCccCCh-----hcccceEEEEccCC
Q 001400 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGG---IIEGDIYISGYPKRQ-----ETFARISGYCEQND 911 (1085)
Q Consensus 840 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~---~~~G~i~i~g~~~~~-----~~~~~~~gy~~Q~~ 911 (1085)
++..+|+|+||+|++||+++|+|+||||||||+++|+|..++. +.+|+|.++|.++.. ..+++.+||++|++
T Consensus 18 ~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~ 97 (254)
T PRK14273 18 TDFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILELRRKIGMVFQTP 97 (254)
T ss_pred CCceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHHHHhhceEEEeecc
Confidence 3456999999999999999999999999999999999976531 247999999987531 23466799999998
Q ss_pred CCCCCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCc----ccccccCCCCCCCCCHHHHHHHHHHHHHhcCC
Q 001400 912 IHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTS----LSGALIGLPGINGLSTEQRKRLTIAVELVANP 987 (1085)
Q Consensus 912 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p 987 (1085)
.+++ .||+||+.+....... .......+.++++++.+++.+ ..+. .+.+||||||||++|||||+.+|
T Consensus 98 ~~~~-~tv~eni~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~~~-----~~~~LSgG~~qrv~laral~~~p 169 (254)
T PRK14273 98 NPFL-MSIYDNISYGPKIHGT--KDKKKLDEIVEQSLKKSALWNEVKDKLNT-----NALSLSGGQQQRLCIARTLAIEP 169 (254)
T ss_pred cccc-CcHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHhCCchhhHHHHhC-----CcccCCHHHHHHHHHHHHHHcCC
Confidence 8774 8999999886433211 112233456778888888732 2222 23579999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCC
Q 001400 988 SIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1085)
Q Consensus 988 ~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~ 1055 (1085)
++|||||||+|||+.++..+++.|+++. ++.|||++||+++ .+.+.+|++++|++ |+++..|+..
T Consensus 170 ~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tvii~sH~~~-~~~~~~d~i~~l~~-G~i~~~g~~~ 234 (254)
T PRK14273 170 NVILMDEPTSALDPISTGKIEELIINLK-ESYTIIIVTHNMQ-QAGRISDRTAFFLN-GCIEEESSTD 234 (254)
T ss_pred CEEEEeCCCcccCHHHHHHHHHHHHHHh-cCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCHH
Confidence 9999999999999999999999999985 4799999999986 46788999999985 7898888753
|
|
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-35 Score=315.27 Aligned_cols=183 Identities=46% Similarity=0.768 Sum_probs=156.4
Q ss_pred cceeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCC--CCCceEEEEccCCCCCCC
Q 001400 146 SKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEF--VPPRTSAYVSQQDWQVAE 223 (1085)
Q Consensus 146 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~--~~~~~~~yv~Q~d~~~~~ 223 (1085)
.++.+|+|+|+.|++|++++|+|||||||||||++|+|.+++..+.+|+|.++|+++... ..++.++|++|++.+++.
T Consensus 18 ~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~~~i~~~~q~~~~~~~ 97 (202)
T cd03233 18 SKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYPGEIIYVSEEDVHFPT 97 (202)
T ss_pred CCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhcceEEEEecccccCCC
Confidence 345799999999999999999999999999999999999873223599999999987543 234679999999999999
Q ss_pred CCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCcc
Q 001400 224 MTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEM 303 (1085)
Q Consensus 224 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 303 (1085)
+||+||+.++.+.. . +..
T Consensus 98 ~tv~~~l~~~~~~~---------------------------------------------------------~-----~~~ 115 (202)
T cd03233 98 LTVRETLDFALRCK---------------------------------------------------------G-----NEF 115 (202)
T ss_pred CcHHHHHhhhhhhc---------------------------------------------------------c-----ccc
Confidence 99999998753210 1 123
Q ss_pred cccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEecC
Q 001400 304 LKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSE 383 (1085)
Q Consensus 304 ~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~~ 383 (1085)
+..||||||||++||+||+.+|++++|||||+|||+.++..+.+.++++.+..+.++++++||+.+++.+++|++++|++
T Consensus 116 ~~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~ 195 (202)
T cd03233 116 VRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYE 195 (202)
T ss_pred hhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEEC
Confidence 34699999999999999999999999999999999999999999999987644556777778888899999999999999
Q ss_pred CeEEEec
Q 001400 384 GQIVYQG 390 (1085)
Q Consensus 384 G~iv~~G 390 (1085)
|++++.|
T Consensus 196 G~i~~~g 202 (202)
T cd03233 196 GRQIYYG 202 (202)
T ss_pred CEEEecC
Confidence 9998765
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=335.65 Aligned_cols=208 Identities=17% Similarity=0.243 Sum_probs=168.9
Q ss_pred eEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCC--CeeeeEEEEcCccCCh---hc----ccceEEEEccCC-
Q 001400 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTG--GIIEGDIYISGYPKRQ---ET----FARISGYCEQND- 911 (1085)
Q Consensus 842 ~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~--~~~~G~i~i~g~~~~~---~~----~~~~~gy~~Q~~- 911 (1085)
..+|+||||+|++||++||+|+||||||||+++|+|...+ .+.+|+|.++|.++.. .. +++.++|++|++
T Consensus 20 ~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~ 99 (326)
T PRK11022 20 FRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRNLVGAEVAMIFQDPM 99 (326)
T ss_pred EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCch
Confidence 5799999999999999999999999999999999997542 2468999999987642 11 224699999998
Q ss_pred -CCCCCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEE
Q 001400 912 -IHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIV 990 (1085)
Q Consensus 912 -~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~il 990 (1085)
.+.|.+|+.+++........ .....+..+.+.++++.++|.+..+..... +.+||||||||++|||||+.+|+||
T Consensus 100 ~~l~p~~~v~~~i~~~l~~~~--~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~--p~~LSgGq~QRv~iArAL~~~P~ll 175 (326)
T PRK11022 100 TSLNPCYTVGFQIMEAIKVHQ--GGNKKTRRQRAIDLLNQVGIPDPASRLDVY--PHQLSGGMSQRVMIAMAIACRPKLL 175 (326)
T ss_pred hhcCCcCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHCCCCChHHHHhCC--chhCCHHHHHHHHHHHHHHhCCCEE
Confidence 46788999988865433221 123344556788999999997532211112 3589999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHH-CCceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCC
Q 001400 991 FMDEPTSGLDARAAAIVMRTVRNIVN-TGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1085)
Q Consensus 991 llDEPtsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~ 1055 (1085)
|+||||+|||+.++..+++.|+++.+ .|.|||+||||++ .+.+.+|++++|.+ |++++.|+..
T Consensus 176 ilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~-~~~~~adri~vm~~-G~ive~g~~~ 239 (326)
T PRK11022 176 IADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLA-LVAEAAHKIIVMYA-GQVVETGKAH 239 (326)
T ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEECCHH
Confidence 99999999999999999999999976 5999999999986 36678999999985 7999998754
|
|
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=325.01 Aligned_cols=213 Identities=22% Similarity=0.304 Sum_probs=169.2
Q ss_pred cccCCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCC-CeeeeEEEEcCccCCh---hcccceEEEEccCCC
Q 001400 837 VLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTG-GIIEGDIYISGYPKRQ---ETFARISGYCEQNDI 912 (1085)
Q Consensus 837 ~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~-~~~~G~i~i~g~~~~~---~~~~~~~gy~~Q~~~ 912 (1085)
+.+++..+|+|+||+|++||+++|+|+||||||||+++|+|...+ .+.+|+|.++|.++.. ..+++.++|++|++.
T Consensus 10 ~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~ 89 (246)
T PRK14269 10 LFYGKKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPN 89 (246)
T ss_pred EEECCEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhhEEEEecCCc
Confidence 334456799999999999999999999999999999999997531 2468999999987643 234667999999988
Q ss_pred CCCCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q 001400 913 HSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFM 992 (1085)
Q Consensus 913 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illl 992 (1085)
+++ .|++||+.+....+.... ......+.++++++.+++.+....... ..+..||+|||||++|||||+.+|++|+|
T Consensus 90 l~~-~tv~eni~~~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~~LS~G~~qrv~laral~~~p~lllL 166 (246)
T PRK14269 90 VFV-KSIYENISYAPKLHGMIK-NKDEEEALVVDCLQKVGLFEEVKDKLK-QNALALSGGQQQRLCIARALAIKPKLLLL 166 (246)
T ss_pred ccc-ccHHHHhhhHHhhcCccc-ChHHHHHHHHHHHHHcCCChhhhHHhc-CCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 886 699999987643321100 112334457788999998532111111 12357999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCC
Q 001400 993 DEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1085)
Q Consensus 993 DEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~ 1055 (1085)
||||+|||+.++..+.+.|+++. +|+|||++||+++ ++.+.+|++++|++ |++++.|+..
T Consensus 167 DEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~tH~~~-~~~~~~d~i~~l~~-G~i~~~g~~~ 226 (246)
T PRK14269 167 DEPTSALDPISSGVIEELLKELS-HNLSMIMVTHNMQ-QGKRVADYTAFFHL-GELIEFGESK 226 (246)
T ss_pred cCCcccCCHHHHHHHHHHHHHHh-CCCEEEEEecCHH-HHHhhCcEEEEEEC-CEEEEECCHH
Confidence 99999999999999999999986 4899999999986 47788999999985 7899888753
|
|
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-36 Score=318.42 Aligned_cols=222 Identities=23% Similarity=0.328 Sum_probs=193.6
Q ss_pred ceeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCC-------CceEEEEccCCC
Q 001400 147 KLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP-------PRTSAYVSQQDW 219 (1085)
Q Consensus 147 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~-------~~~~~yv~Q~d~ 219 (1085)
...-++|+|+.|+.||+..|||=||||||||+++|.++..|+ +|+|.++|.++..... ++.+++|+|+-.
T Consensus 40 ~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept---~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~Fa 116 (386)
T COG4175 40 LVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPT---RGEILVDGKDIAKLSAAELRELRRKKISMVFQSFA 116 (386)
T ss_pred cEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCC---CceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhc
Confidence 356789999999999999999999999999999999999886 9999999998765532 468999999999
Q ss_pred CCCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccc
Q 001400 220 QVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLV 299 (1085)
Q Consensus 220 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~v 299 (1085)
++|+.||.||..|+...+|.+.. +.+.+..+.|+..||+...+.++
T Consensus 117 LlPhrtVl~Nv~fGLev~Gv~~~----------------------------------er~~~a~~~l~~VgL~~~~~~yp 162 (386)
T COG4175 117 LLPHRTVLENVAFGLEVQGVPKA----------------------------------EREERALEALELVGLEGYADKYP 162 (386)
T ss_pred cccchhHhhhhhcceeecCCCHH----------------------------------HHHHHHHHHHHHcCchhhhhcCc
Confidence 99999999999999998876421 11234778899999999888655
Q ss_pred cCcccccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEE
Q 001400 300 GDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVI 379 (1085)
Q Consensus 300 g~~~~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii 379 (1085)
.+||||+||||.|||||+.+|+||+||||+|+|||--+.++.+.|.++...+++| |+.++|+.+|++.+.|||.
T Consensus 163 -----~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KT-IvFitHDLdEAlriG~rIa 236 (386)
T COG4175 163 -----NELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKT-IVFITHDLDEALRIGDRIA 236 (386)
T ss_pred -----ccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCe-EEEEecCHHHHHhccceEE
Confidence 5699999999999999999999999999999999999999999999998877665 5558999999999999999
Q ss_pred EecCCeEEEecChhhHHHHHHhCCCCCCCCCChhHHHHhh
Q 001400 380 LLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEV 419 (1085)
Q Consensus 380 ~L~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~adfl~~v 419 (1085)
+|.+|+|+..|++++++. .|...-+++|...+
T Consensus 237 imkdG~ivQ~Gtp~eIl~--------~PAndYV~~Fv~~v 268 (386)
T COG4175 237 IMKDGEIVQVGTPEEILL--------NPANDYVRDFVRNV 268 (386)
T ss_pred EecCCeEEEeCCHHHHHc--------CccHHHHHHHHhcC
Confidence 999999999999999974 35555566676654
|
|
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=331.69 Aligned_cols=205 Identities=20% Similarity=0.280 Sum_probs=169.9
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCC-------CCceEEEEccCC--
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV-------PPRTSAYVSQQD-- 218 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~-------~~~~~~yv~Q~d-- 218 (1085)
+++|+|||++|++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.++||+|++
T Consensus 20 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~ 96 (286)
T PRK13646 20 HQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPT---TGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPES 96 (286)
T ss_pred cCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEECccccccchHHHHHhheEEEecChHh
Confidence 35999999999999999999999999999999999999876 999999999875421 245799999986
Q ss_pred CCCCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCc-ccccc
Q 001400 219 WQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLD-TCADT 297 (1085)
Q Consensus 219 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt 297 (1085)
.+++ .||.||+.|+....+... .+...+++++++.+||. ...++
T Consensus 97 ~l~~-~tv~e~i~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gL~~~~~~~ 141 (286)
T PRK13646 97 QLFE-DTVEREIIFGPKNFKMNL----------------------------------DEVKNYAHRLLMDLGFSRDVMSQ 141 (286)
T ss_pred ccch-hhHHHHHHhhHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCChhhhhC
Confidence 3444 599999988643211100 00122477889999996 55555
Q ss_pred cccCcccccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCe
Q 001400 298 LVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDD 377 (1085)
Q Consensus 298 ~vg~~~~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ 377 (1085)
. ++.|||||||||+||+||+.+|++++|||||+|||+.++.++.+.|+++.+. .+++|+.++|+.+++.+++|+
T Consensus 142 ~-----~~~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~-~g~tvl~vtH~~~~~~~~~dr 215 (286)
T PRK13646 142 S-----PFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTD-ENKTIILVSHDMNEVARYADE 215 (286)
T ss_pred C-----cccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHh-CCCEEEEEecCHHHHHHhCCE
Confidence 4 4579999999999999999999999999999999999999999999998754 346666788999999999999
Q ss_pred EEEecCCeEEEecChhhHH
Q 001400 378 VILLSEGQIVYQGPRVSVL 396 (1085)
Q Consensus 378 ii~L~~G~iv~~G~~~~~~ 396 (1085)
|++|++|++++.|+++++.
T Consensus 216 i~~l~~G~i~~~g~~~~~~ 234 (286)
T PRK13646 216 VIVMKEGSIVSQTSPKELF 234 (286)
T ss_pred EEEEECCEEEEECCHHHHH
Confidence 9999999999999988764
|
|
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-35 Score=323.94 Aligned_cols=210 Identities=21% Similarity=0.295 Sum_probs=168.2
Q ss_pred CCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCC--CC-eeeeEEEEcCccCCh-----hcccceEEEEccCC
Q 001400 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKT--GG-IIEGDIYISGYPKRQ-----ETFARISGYCEQND 911 (1085)
Q Consensus 840 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~--~~-~~~G~i~i~g~~~~~-----~~~~~~~gy~~Q~~ 911 (1085)
++..+|+|+||+|++||++||+|+||||||||+++|+|..+ +. +.+|+|.++|.++.. ..+++.++|++|++
T Consensus 15 ~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~ 94 (252)
T PRK14256 15 GKNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIRRRVGMVFQKP 94 (252)
T ss_pred CCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHHhhccEEEEecCC
Confidence 44579999999999999999999999999999999999753 21 257999999987632 23567799999999
Q ss_pred CCCCCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEE
Q 001400 912 IHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVF 991 (1085)
Q Consensus 912 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~ill 991 (1085)
.+++..|++||+.+...... ........+.++++++.+++......... ..+..||+|||||++|||||+.+|++|+
T Consensus 95 ~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~~LS~G~~qrl~laral~~~p~lll 171 (252)
T PRK14256 95 NPFPAMSIYDNVIAGYKLNG--RVNRSEADEIVESSLKRVALWDEVKDRLK-SNAMELSGGQQQRLCIARTIAVKPEVIL 171 (252)
T ss_pred CCCCcCcHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhHHhh-CCcCcCCHHHHHHHHHHHHHhcCCCEEE
Confidence 98988999999987543221 11122233457788888887532111111 1235799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCC
Q 001400 992 MDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1085)
Q Consensus 992 lDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~ 1055 (1085)
|||||+|||+.++..+.+.|+++.+ +.|||++||+++ ++.+.||++++|. +|+++..|+..
T Consensus 172 lDEP~~gLD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~~~~~~d~i~~l~-~G~i~~~~~~~ 232 (252)
T PRK14256 172 MDEPASALDPISTLKIEELIEELKE-KYTIIIVTHNMQ-QAARVSDYTAFFY-MGDLVECGETK 232 (252)
T ss_pred EcCCcccCCHHHHHHHHHHHHHHHh-CCcEEEEECCHH-HHHhhCCEEEEEE-CCEEEEeCCHH
Confidence 9999999999999999999999865 689999999986 4678899999997 47899888754
|
|
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-36 Score=325.25 Aligned_cols=206 Identities=28% Similarity=0.390 Sum_probs=171.6
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCC---CCceEEEEccCCCCCCCC
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV---PPRTSAYVSQQDWQVAEM 224 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~---~~~~~~yv~Q~d~~~~~l 224 (1085)
+.+|+|+|+.|++|++++|+|||||||||||++|+|.++|. +|+|.++|.++.... .++.++|++|++.+++.+
T Consensus 14 ~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 90 (242)
T cd03295 14 KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPT---SGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHM 90 (242)
T ss_pred ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCeEcCcCChHHhhcceEEEccCccccCCC
Confidence 45999999999999999999999999999999999998876 999999998775432 245789999999989999
Q ss_pred CHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcc--cccccccCc
Q 001400 225 TVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDT--CADTLVGDE 302 (1085)
Q Consensus 225 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~--~~dt~vg~~ 302 (1085)
||+||+.+.....+... ......+.++++.+||+. ..++.
T Consensus 91 tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~l~l~~~~~~~~~---- 132 (242)
T cd03295 91 TVEENIALVPKLLKWPK----------------------------------EKIRERADELLALVGLDPAEFADRY---- 132 (242)
T ss_pred cHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCCcHHHHhcC----
Confidence 99999987643221100 001223677899999975 44443
Q ss_pred ccccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEec
Q 001400 303 MLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLS 382 (1085)
Q Consensus 303 ~~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~ 382 (1085)
++.|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++++.. +++|+.++|+.+++.+++|+|++|+
T Consensus 133 -~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~-g~tvii~sH~~~~~~~~~d~i~~l~ 210 (242)
T cd03295 133 -PHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQEL-GKTIVFVTHDIDEAFRLADRIAIMK 210 (242)
T ss_pred -hhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHc-CCEEEEEecCHHHHHHhCCEEEEEE
Confidence 45799999999999999999999999999999999999999999999987533 4556667888889999999999999
Q ss_pred CCeEEEecChhhHH
Q 001400 383 EGQIVYQGPRVSVL 396 (1085)
Q Consensus 383 ~G~iv~~G~~~~~~ 396 (1085)
+|++++.|+.+++.
T Consensus 211 ~G~i~~~~~~~~~~ 224 (242)
T cd03295 211 NGEIVQVGTPDEIL 224 (242)
T ss_pred CCEEEEecCHHHHH
Confidence 99999999887653
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-36 Score=318.73 Aligned_cols=195 Identities=26% Similarity=0.415 Sum_probs=165.7
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCC-CCCceEEEEccCCCCCCCCCH
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEF-VPPRTSAYVSQQDWQVAEMTV 226 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~-~~~~~~~yv~Q~d~~~~~lTV 226 (1085)
.++|+|+|+.+++|++++|+|||||||||||++|+|.+++. +|+|.++|.++... ..++.++|++|++.+++.+||
T Consensus 13 ~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv 89 (208)
T cd03268 13 KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPD---SGEITFDGKSYQKNIEALRRIGALIEAPGFYPNLTA 89 (208)
T ss_pred eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCCcccchHHHHhhEEEecCCCccCccCcH
Confidence 46999999999999999999999999999999999998776 99999999876432 124579999999988989999
Q ss_pred HHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCccccc
Q 001400 227 RETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKG 306 (1085)
Q Consensus 227 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 306 (1085)
+||+.+.....+. .+..++++++.+||++..++.+ ..
T Consensus 90 ~e~l~~~~~~~~~--------------------------------------~~~~~~~~l~~~~l~~~~~~~~-----~~ 126 (208)
T cd03268 90 RENLRLLARLLGI--------------------------------------RKKRIDEVLDVVGLKDSAKKKV-----KG 126 (208)
T ss_pred HHHHHHHHHhcCC--------------------------------------cHHHHHHHHHHcCCHHHHhhhH-----hh
Confidence 9999875432110 0123677889999987776654 46
Q ss_pred CchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEecCCeE
Q 001400 307 ISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQI 386 (1085)
Q Consensus 307 LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~~G~i 386 (1085)
|||||||||+||+|++.+|++++|||||+|||+.++..+.+.|+++.+ . +.+++.++|+.+++.+++|++++|++|++
T Consensus 127 LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~-~~tii~~tH~~~~~~~~~d~v~~l~~g~i 204 (208)
T cd03268 127 FSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRD-Q-GITVLISSHLLSEIQKVADRIGIINKGKL 204 (208)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHH-C-CCEEEEEcCCHHHHHHhcCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999998875 3 34566678888999999999999999999
Q ss_pred EEec
Q 001400 387 VYQG 390 (1085)
Q Consensus 387 v~~G 390 (1085)
++.|
T Consensus 205 ~~~g 208 (208)
T cd03268 205 IEEG 208 (208)
T ss_pred EecC
Confidence 8765
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-36 Score=337.15 Aligned_cols=209 Identities=20% Similarity=0.248 Sum_probs=174.4
Q ss_pred ceeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCC------CCceEEEEccCC--
Q 001400 147 KLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV------PPRTSAYVSQQD-- 218 (1085)
Q Consensus 147 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~------~~~~~~yv~Q~d-- 218 (1085)
...+|+|||++|++||+++|+|+||||||||+++|+|++++. +|+|.++|.++.+.. .++.++||+|++
T Consensus 33 ~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~---~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~ 109 (331)
T PRK15079 33 TLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKAT---DGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLA 109 (331)
T ss_pred ceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCC---CcEEEECCEECCcCCHHHHHHHhCceEEEecCchh
Confidence 357999999999999999999999999999999999999875 999999999876543 245799999997
Q ss_pred CCCCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCc-ccccc
Q 001400 219 WQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLD-TCADT 297 (1085)
Q Consensus 219 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt 297 (1085)
.+++.+||.||+.+..+....... . .+....++++++.+||. ...++
T Consensus 110 ~l~p~~tv~~~i~~~l~~~~~~~~--------~------------------------~~~~~~~~~~l~~vgl~~~~~~~ 157 (331)
T PRK15079 110 SLNPRMTIGEIIAEPLRTYHPKLS--------R------------------------QEVKDRVKAMMLKVGLLPNLINR 157 (331)
T ss_pred hcCCCCCHHHHHHHHHHHhccCCC--------H------------------------HHHHHHHHHHHHHcCCChHHhcC
Confidence 578899999999886442210000 0 00122467889999994 34454
Q ss_pred cccCcccccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCe
Q 001400 298 LVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDD 377 (1085)
Q Consensus 298 ~vg~~~~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ 377 (1085)
.+..|||||||||+||+||+.+|++|++||||+|||..++.+|.+.|+++.+.. +++++.++|+...+.+++|+
T Consensus 158 -----~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~-~~til~iTHdl~~~~~~~dr 231 (331)
T PRK15079 158 -----YPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREM-GLSLIFIAHDLAVVKHISDR 231 (331)
T ss_pred -----CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHhCCE
Confidence 445799999999999999999999999999999999999999999999987643 45677789999999999999
Q ss_pred EEEecCCeEEEecChhhHH
Q 001400 378 VILLSEGQIVYQGPRVSVL 396 (1085)
Q Consensus 378 ii~L~~G~iv~~G~~~~~~ 396 (1085)
|++|++|++++.|+.+++.
T Consensus 232 i~vl~~G~ive~g~~~~i~ 250 (331)
T PRK15079 232 VLVMYLGHAVELGTYDEVY 250 (331)
T ss_pred EEEEECCEEEEEcCHHHHH
Confidence 9999999999999988774
|
|
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-35 Score=334.28 Aligned_cols=213 Identities=19% Similarity=0.238 Sum_probs=172.9
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCC-ceeeEEEECCccCCCCCC-------CceEEEEccCC-
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHL-QVSGKITYNGHGFKEFVP-------PRTSAYVSQQD- 218 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~-~~~G~i~~~G~~~~~~~~-------~~~~~yv~Q~d- 218 (1085)
..+|+|||++|++||+++|+|+||||||||+++|+|++++.. ..+|+|.++|.++..... ++.++||+|++
T Consensus 20 ~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~ 99 (326)
T PRK11022 20 FRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRNLVGAEVAMIFQDPM 99 (326)
T ss_pred EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCch
Confidence 569999999999999999999999999999999999986421 358999999998765431 24699999997
Q ss_pred -CCCCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccc
Q 001400 219 -WQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADT 297 (1085)
Q Consensus 219 -~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 297 (1085)
.+.|.+||.+++........... . .+...+++++|+.+||++..+.
T Consensus 100 ~~l~p~~~v~~~i~~~l~~~~~~~---------~------------------------~~~~~~~~~~L~~~gL~~~~~~ 146 (326)
T PRK11022 100 TSLNPCYTVGFQIMEAIKVHQGGN---------K------------------------KTRRQRAIDLLNQVGIPDPASR 146 (326)
T ss_pred hhcCCcCCHHHHHHHHHHHhcCCC---------H------------------------HHHHHHHHHHHHHCCCCChHHH
Confidence 47889999999876543211000 0 0012347888999999752211
Q ss_pred cccCcccccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCe
Q 001400 298 LVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDD 377 (1085)
Q Consensus 298 ~vg~~~~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ 377 (1085)
-+.....|||||||||+||+||+.+|++|++||||+|||..++.++++.|+++.+.. +.+++.++|+...+.+++|+
T Consensus 147 --l~~~p~~LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~-g~til~iTHdl~~~~~~adr 223 (326)
T PRK11022 147 --LDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKE-NMALVLITHDLALVAEAAHK 223 (326)
T ss_pred --HhCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCE
Confidence 123456799999999999999999999999999999999999999999999987644 45667788999999999999
Q ss_pred EEEecCCeEEEecChhhHH
Q 001400 378 VILLSEGQIVYQGPRVSVL 396 (1085)
Q Consensus 378 ii~L~~G~iv~~G~~~~~~ 396 (1085)
|++|++|++++.|+.+++.
T Consensus 224 i~vm~~G~ive~g~~~~~~ 242 (326)
T PRK11022 224 IIVMYAGQVVETGKAHDIF 242 (326)
T ss_pred EEEEECCEEEEECCHHHHh
Confidence 9999999999999998875
|
|
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-36 Score=318.75 Aligned_cols=192 Identities=30% Similarity=0.353 Sum_probs=161.4
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCCCceEEEEccCCC-CCCCCCH
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDW-QVAEMTV 226 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~~~~~~yv~Q~d~-~~~~lTV 226 (1085)
+++|+|+|+.+++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.....++.++|++|++. .+..+||
T Consensus 13 ~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv 89 (205)
T cd03226 13 TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKES---SGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSV 89 (205)
T ss_pred CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEhhhHHhhcceEEEecChhhhhhhccH
Confidence 46999999999999999999999999999999999998876 9999999988754333467999999974 3456899
Q ss_pred HHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCccccc
Q 001400 227 RETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKG 306 (1085)
Q Consensus 227 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 306 (1085)
+||+.+.....+ .....++++++.+||.+..++.+ ..
T Consensus 90 ~e~l~~~~~~~~--------------------------------------~~~~~~~~~l~~~~l~~~~~~~~-----~~ 126 (205)
T cd03226 90 REELLLGLKELD--------------------------------------AGNEQAETVLKDLDLYALKERHP-----LS 126 (205)
T ss_pred HHHHhhhhhhcC--------------------------------------ccHHHHHHHHHHcCCchhcCCCc-----hh
Confidence 999987532110 00123677899999988777655 46
Q ss_pred CchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEecCCeE
Q 001400 307 ISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQI 386 (1085)
Q Consensus 307 LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~~G~i 386 (1085)
||||||||++|||||+.+|++++|||||+|||+.++..+.+.|+++++. +.+++.++|+.+++.+++|++++|++|++
T Consensus 127 LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~--~~tii~~sH~~~~~~~~~d~i~~l~~G~i 204 (205)
T cd03226 127 LSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQ--GKAVIVITHDYEFLAKVCDRVLLLANGAI 204 (205)
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999999998653 44566678888999999999999999997
Q ss_pred E
Q 001400 387 V 387 (1085)
Q Consensus 387 v 387 (1085)
+
T Consensus 205 v 205 (205)
T cd03226 205 V 205 (205)
T ss_pred C
Confidence 5
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-36 Score=368.35 Aligned_cols=207 Identities=26% Similarity=0.395 Sum_probs=166.0
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCC---CceEEEEccCCCCCCCC
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP---PRTSAYVSQQDWQVAEM 224 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 224 (1085)
.++|+|+|++|+||+.++|+||||||||||+++|+|.+ |. +|+|.+||.++.+... ++.++||+|++++|. .
T Consensus 363 ~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~---~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~-~ 437 (588)
T PRK11174 363 KTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PY---QGSLKINGIELRELDPESWRKHLSWVGQNPQLPH-G 437 (588)
T ss_pred CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CC---CcEEEECCEecccCCHHHHHhheEEecCCCcCCC-c
Confidence 35999999999999999999999999999999999998 65 8999999999877653 578999999999776 5
Q ss_pred CHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCccc
Q 001400 225 TVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEML 304 (1085)
Q Consensus 225 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 304 (1085)
|++|||.++.. ....+.+.++++. + ..++.+ -.|++..||.||+. .
T Consensus 438 TI~eNI~~g~~----~~~~eei~~al~~------------------a---------~l~~~i--~~lp~G~dT~vge~-G 483 (588)
T PRK11174 438 TLRDNVLLGNP----DASDEQLQQALEN------------------A---------WVSEFL--PLLPQGLDTPIGDQ-A 483 (588)
T ss_pred CHHHHhhcCCC----CCCHHHHHHHHHH------------------h---------CHHHHH--HhcccccccccccC-C
Confidence 99999988521 0111111111110 0 012222 24677889999986 4
Q ss_pred ccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEecCC
Q 001400 305 KGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEG 384 (1085)
Q Consensus 305 ~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~~G 384 (1085)
.+||||||||++||||++++|+||+||||||+||+.++..|.+.|+++.+ ++|+|+ ++|.. +....||+|++|++|
T Consensus 484 ~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~~--~~TvIi-ItHrl-~~i~~aD~Iivl~~G 559 (588)
T PRK11174 484 AGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASR--RQTTLM-VTHQL-EDLAQWDQIWVMQDG 559 (588)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhC--CCEEEE-EecCh-HHHHhCCEEEEEeCC
Confidence 57999999999999999999999999999999999999999999998753 456555 55554 456779999999999
Q ss_pred eEEEecChhhHHH
Q 001400 385 QIVYQGPRVSVLD 397 (1085)
Q Consensus 385 ~iv~~G~~~~~~~ 397 (1085)
+++..|+++++.+
T Consensus 560 ~i~e~G~~~eL~~ 572 (588)
T PRK11174 560 QIVQQGDYAELSQ 572 (588)
T ss_pred eEeecCCHHHHHh
Confidence 9999999998864
|
|
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-35 Score=321.99 Aligned_cols=198 Identities=26% Similarity=0.354 Sum_probs=164.7
Q ss_pred eeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCChhcccceEEEEccCCCCCCCCCHHHHHH
Q 001400 845 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLESLL 924 (1085)
Q Consensus 845 L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gy~~Q~~~~~~~~tv~e~l~ 924 (1085)
|+|+||+|++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.++.... ...+|++|++.+++.+|+.||+.
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~--~~~~~v~q~~~l~~~~tv~e~l~ 76 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQ--PTSGGVILEGKQITEPG--PDRMVVFQNYSLLPWLTVRENIA 76 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEECCCCC--hhheEEecCcccCCCCCHHHHHH
Confidence 469999999999999999999999999999999876 56899999998764322 12489999999999999999998
Q ss_pred HhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHH
Q 001400 925 FSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAA 1004 (1085)
Q Consensus 925 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEPtsgLD~~~~ 1004 (1085)
+......+ ........+.+.++++.+++.+..+... ..||||||||++|||||+.+|++|||||||+|||+.++
T Consensus 77 ~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~ 150 (230)
T TIGR01184 77 LAVDRVLP-DLSKSERRAIVEEHIALVGLTEAADKRP-----GQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTR 150 (230)
T ss_pred HHHHhccc-CCCHHHHHHHHHHHHHHcCCHHHHcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHH
Confidence 75321111 1222334456788999999976655543 57999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHC-CceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCC
Q 001400 1005 AIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1085)
Q Consensus 1005 ~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~ 1054 (1085)
..+.+.|+++.++ |+|||++||+++ ++.+.+|++++|++ |+++..|+.
T Consensus 151 ~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~-G~i~~~~~~ 199 (230)
T TIGR01184 151 GNLQEELMQIWEEHRVTVLMVTHDVD-EALLLSDRVVMLTN-GPAANIGQI 199 (230)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEeC-CcEecccCc
Confidence 9999999998764 899999999986 47788999999985 688888764
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=335.14 Aligned_cols=203 Identities=26% Similarity=0.295 Sum_probs=170.3
Q ss_pred eEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCCh------hcccceEEEEccCC--CC
Q 001400 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ------ETFARISGYCEQND--IH 913 (1085)
Q Consensus 842 ~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~------~~~~~~~gy~~Q~~--~~ 913 (1085)
..+|+||||+|++||++||+|+||||||||+++|+|... +.+|+|.++|.++.. ..+++.++|++|++ .+
T Consensus 28 ~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~--p~~G~i~~~g~~l~~~~~~~~~~~r~~i~~v~Q~~~~~l 105 (327)
T PRK11308 28 VKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIET--PTGGELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGSL 105 (327)
T ss_pred eeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCC--CCCcEEEECCEEcCcCCHHHHHHHhCCEEEEEcCchhhc
Confidence 579999999999999999999999999999999999876 468999999987642 23466799999998 57
Q ss_pred CCCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCc-ccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q 001400 914 SPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTS-LSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFM 992 (1085)
Q Consensus 914 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illl 992 (1085)
.|.+|+.+++.+..... ......+..+.+.++++.+++.+ ..+.. +.+||||||||++|||||+.+|+|||+
T Consensus 106 ~p~~~v~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----p~~LSgGq~QRv~iArAL~~~P~lLil 178 (327)
T PRK11308 106 NPRKKVGQILEEPLLIN--TSLSAAERREKALAMMAKVGLRPEHYDRY-----PHMFSGGQRQRIAIARALMLDPDVVVA 178 (327)
T ss_pred CCccCHHHHHHHHHHHc--cCCCHHHHHHHHHHHHHHCCCChHHhcCC-----CccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 78899999987653322 11233445567889999999953 33433 358999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHC-CceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCC
Q 001400 993 DEPTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1085)
Q Consensus 993 DEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~ 1055 (1085)
||||++||..++..|+++|+++.++ |.|||+||||++ .+.+.+|++++|.+ |++++.|+..
T Consensus 179 DEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~-~~~~~adrv~vm~~-G~ive~g~~~ 240 (327)
T PRK11308 179 DEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLS-VVEHIADEVMVMYL-GRCVEKGTKE 240 (327)
T ss_pred ECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEECCHH
Confidence 9999999999999999999999764 999999999986 36678999999985 7999999754
|
|
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=329.79 Aligned_cols=216 Identities=25% Similarity=0.357 Sum_probs=175.4
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCC---CCceEEEEccCCC-CCCC
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV---PPRTSAYVSQQDW-QVAE 223 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~---~~~~~~yv~Q~d~-~~~~ 223 (1085)
+++|+|+|++|++|++++|+|||||||||||++|+|.++|. +|+|.++|+++.... .++.++|++|++. .++.
T Consensus 20 ~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~---~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~~ 96 (279)
T PRK13635 20 TYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPE---AGTITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVG 96 (279)
T ss_pred ccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECCEECCcCcHHHHhhheEEEEeCHHHhccc
Confidence 35999999999999999999999999999999999999876 999999999876432 2457999999973 5777
Q ss_pred CCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCcc
Q 001400 224 MTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEM 303 (1085)
Q Consensus 224 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 303 (1085)
+||.|||.++....+... .+...+++++++.+||++..++.+
T Consensus 97 ~tv~enl~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gL~~~~~~~~---- 138 (279)
T PRK13635 97 ATVQDDVAFGLENIGVPR----------------------------------EEMVERVDQALRQVGMEDFLNREP---- 138 (279)
T ss_pred ccHHHHHhhhHhhCCCCH----------------------------------HHHHHHHHHHHHHcCChhhhhCCc----
Confidence 899999988643221100 001224788899999988777655
Q ss_pred cccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEecC
Q 001400 304 LKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSE 383 (1085)
Q Consensus 304 ~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~~ 383 (1085)
..|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++++.. +++|+.++|+.+++. .+|+|++|++
T Consensus 139 -~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~-~~tilivsH~~~~~~-~~d~i~~l~~ 215 (279)
T PRK13635 139 -HRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQK-GITVLSITHDLDEAA-QADRVIVMNK 215 (279)
T ss_pred -ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcC-CCEEEEEecCHHHHH-cCCEEEEEEC
Confidence 4699999999999999999999999999999999999999999999987643 455666778878876 5999999999
Q ss_pred CeEEEecChhhHHH---HHHhCCCCCC
Q 001400 384 GQIVYQGPRVSVLD---FFASMGFSCP 407 (1085)
Q Consensus 384 G~iv~~G~~~~~~~---~f~~~G~~~p 407 (1085)
|++++.|+.+++.. .+...|+.+|
T Consensus 216 G~i~~~g~~~~~~~~~~~~~~~~~~~~ 242 (279)
T PRK13635 216 GEILEEGTPEEIFKSGHMLQEIGLDVP 242 (279)
T ss_pred CEEEEECCHHHHhcCHHHHHHcCCCCC
Confidence 99999999887653 3334454443
|
|
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-36 Score=326.46 Aligned_cols=213 Identities=24% Similarity=0.334 Sum_probs=171.4
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCC------CCceEEEEccCCCCC
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV------PPRTSAYVSQQDWQV 221 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~------~~~~~~yv~Q~d~~~ 221 (1085)
.++|+|+|+++++|++++|+|||||||||||++|+|.++|. +|+|.++|.++.... .++.++|++|++.++
T Consensus 15 ~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~ 91 (243)
T TIGR02315 15 KQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPS---SGSILLEGTDITKLRGKKLRKLRRRIGMIFQHYNLI 91 (243)
T ss_pred cceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---ccEEEECCEEhhhCCHHHHHHHHhheEEEcCCCccc
Confidence 45999999999999999999999999999999999998776 999999998875432 245799999999889
Q ss_pred CCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccC
Q 001400 222 AEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGD 301 (1085)
Q Consensus 222 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 301 (1085)
+.+||+||+.++..... .... .. .+..+ .....+++++++.+||.+..+..+
T Consensus 92 ~~~tv~~~l~~~~~~~~--~~~~---~~------~~~~~---------------~~~~~~~~~~l~~~~l~~~~~~~~-- 143 (243)
T TIGR02315 92 ERLTVLENVLHGRLGYK--PTWR---SL------LGRFS---------------EEDKERALSALERVGLADKAYQRA-- 143 (243)
T ss_pred ccccHHHHHhhcccccc--cchh---hh------hcccc---------------HHHHHHHHHHHHHcCcHhhhcCCc--
Confidence 99999999987532100 0000 00 00000 001234778899999987666544
Q ss_pred cccccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEe
Q 001400 302 EMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILL 381 (1085)
Q Consensus 302 ~~~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L 381 (1085)
..|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++.+.. +++|+.++|+.+++.++||++++|
T Consensus 144 ---~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~-~~tiii~tH~~~~~~~~~d~v~~l 219 (243)
T TIGR02315 144 ---DQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKED-GITVIINLHQVDLAKKYADRIVGL 219 (243)
T ss_pred ---ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHhcCeEEEE
Confidence 5699999999999999999999999999999999999999999999986543 455666888889999999999999
Q ss_pred cCCeEEEecChhhH
Q 001400 382 SEGQIVYQGPRVSV 395 (1085)
Q Consensus 382 ~~G~iv~~G~~~~~ 395 (1085)
++|++++.|+++++
T Consensus 220 ~~G~i~~~~~~~~~ 233 (243)
T TIGR02315 220 KAGEIVFDGAPSEL 233 (243)
T ss_pred ECCEEEecCCHHHh
Confidence 99999999988764
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=328.24 Aligned_cols=212 Identities=25% Similarity=0.388 Sum_probs=170.8
Q ss_pred ccCCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCC------eeeeEEEEcCccCCh---hcccceEEEEc
Q 001400 838 LEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGG------IIEGDIYISGYPKRQ---ETFARISGYCE 908 (1085)
Q Consensus 838 ~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~------~~~G~i~i~g~~~~~---~~~~~~~gy~~ 908 (1085)
.+++..+|+|+||+|++||+++|+|+||||||||+++|+|..++. ..+|+|.++|.+... ..+++.++|++
T Consensus 10 ~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~v~ 89 (272)
T PRK13547 10 ARRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPRLARLRAVLP 89 (272)
T ss_pred EECCEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHHHHHhhcEEec
Confidence 345567999999999999999999999999999999999976521 127999999987542 33456689999
Q ss_pred cCCCCCCCCCHHHHHHHhhhhcC-CCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHh---
Q 001400 909 QNDIHSPGLTVLESLLFSAWLRL-PSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELV--- 984 (1085)
Q Consensus 909 Q~~~~~~~~tv~e~l~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~--- 984 (1085)
|++..++.+|++||+.+...... ..........+.++++++.+++.+..+.. +..||+|||||++|||||+
T Consensus 90 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qrv~laral~~~~ 164 (272)
T PRK13547 90 QAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRD-----VTTLSGGELARVQFARVLAQLW 164 (272)
T ss_pred ccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCC-----cccCCHHHHHHHHHHHHHhccc
Confidence 99876667899999987532111 00111123345678899999997765543 3579999999999999999
Q ss_pred ------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCCC
Q 001400 985 ------ANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGS 1056 (1085)
Q Consensus 985 ------~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~~ 1056 (1085)
.+|++|+|||||+|||+.++..+.+.|+++.++ |.|||++||+++ ++.+.||++++|++ |++++.|+..+
T Consensus 165 ~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~-~~~~~~d~i~~l~~-G~i~~~g~~~~ 241 (272)
T PRK13547 165 PPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPN-LAARHADRIAMLAD-GAIVAHGAPAD 241 (272)
T ss_pred cccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEEC-CeEEEecCHHH
Confidence 599999999999999999999999999998765 899999999986 46678999999985 78998887643
|
|
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=327.74 Aligned_cols=204 Identities=24% Similarity=0.340 Sum_probs=168.7
Q ss_pred CeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCChh------cccceEEEEccCC--C
Q 001400 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE------TFARISGYCEQND--I 912 (1085)
Q Consensus 841 ~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~------~~~~~~gy~~Q~~--~ 912 (1085)
++.+|+|+||+|++||++||+|+||||||||+++|+|... +.+|+|.++|.++... .+++.++|++|++ .
T Consensus 23 ~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~ 100 (265)
T TIGR02769 23 RAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEK--PAQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSA 100 (265)
T ss_pred ceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEccccCHHHHHHHhhceEEEecChhhh
Confidence 3579999999999999999999999999999999999876 5689999999876421 2356799999997 4
Q ss_pred CCCCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCC-cccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEE
Q 001400 913 HSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELT-SLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVF 991 (1085)
Q Consensus 913 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~ill 991 (1085)
+.+..|++||+.+...... ........+.++++++.+++. ...+.. +..||+|||||++|||||+.+|++||
T Consensus 101 ~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~~LSgGe~qrv~laral~~~p~ill 173 (265)
T TIGR02769 101 VNPRMTVRQIIGEPLRHLT--SLDESEQKARIAELLDMVGLRSEDADKL-----PRQLSGGQLQRINIARALAVKPKLIV 173 (265)
T ss_pred cCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCChhhhhCC-----hhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 5678999999976532111 112223345678899999985 455543 35799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHC-CceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCC
Q 001400 992 MDEPTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1085)
Q Consensus 992 lDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~ 1055 (1085)
|||||+|||+.++..+.+.|+++.++ |.|||++||+++ .+.+.+|++++|++ |++++.|+..
T Consensus 174 LDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~-~~~~~~d~i~~l~~-G~i~~~g~~~ 236 (265)
T TIGR02769 174 LDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLR-LVQSFCQRVAVMDK-GQIVEECDVA 236 (265)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHHhcEEEEEeC-CEEEEECCHH
Confidence 99999999999999999999998764 899999999986 46678999999984 7899988764
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-35 Score=325.06 Aligned_cols=209 Identities=26% Similarity=0.345 Sum_probs=165.9
Q ss_pred CCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCC---CCeeeeEEEEcCccCCh-----hcccceEEEEccCC
Q 001400 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKT---GGIIEGDIYISGYPKRQ-----ETFARISGYCEQND 911 (1085)
Q Consensus 840 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~---~~~~~G~i~i~g~~~~~-----~~~~~~~gy~~Q~~ 911 (1085)
++..+|+|+||+|++||+++|+|+||||||||+++|+|... +.+.+|+|.++|.++.. ..+++.++|++|++
T Consensus 17 ~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~ 96 (253)
T PRK14242 17 GDFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVVELRRRVGMVFQKP 96 (253)
T ss_pred CCeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHHHHhhcEEEEecCC
Confidence 34569999999999999999999999999999999999642 11358999999987632 23456799999998
Q ss_pred CCCCCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEE
Q 001400 912 IHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVF 991 (1085)
Q Consensus 912 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~ill 991 (1085)
.+++ .|++||+.+....+.. .......+.++++++.+++.+....... ..+..||||||||++|||||+.+|+|||
T Consensus 97 ~~~~-~tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~~LSgGq~qrv~laral~~~p~lll 172 (253)
T PRK14242 97 NPFP-KSIFENVAYGLRVNGV--KDKAYLAERVERSLRHAALWDEVKDRLH-ESALGLSGGQQQRLCIARALAVEPEVLL 172 (253)
T ss_pred CCCc-CcHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHHcCCchhhhHHhh-CCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 8887 5999999886433211 1122334557788888888542111111 1235799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCC
Q 001400 992 MDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1085)
Q Consensus 992 lDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~ 1055 (1085)
|||||+|||+.++..+.+.|+++. ++.|||++||+++ ++.+.+|++++|++ |+++..|+..
T Consensus 173 lDEPt~~LD~~~~~~l~~~l~~~~-~~~tvii~tH~~~-~~~~~~d~v~~l~~-G~i~~~g~~~ 233 (253)
T PRK14242 173 MDEPASALDPIATQKIEELIHELK-ARYTIIIVTHNMQ-QAARVSDVTAFFYM-GKLIEVGPTE 233 (253)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHh-cCCeEEEEEecHH-HHHHhCCEEEEEEC-CEEEEeCCHH
Confidence 999999999999999999999985 4799999999986 46788999999985 6888887653
|
|
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-35 Score=322.82 Aligned_cols=209 Identities=23% Similarity=0.267 Sum_probs=170.6
Q ss_pred eeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCChh-cccceEEEEccCCCCCCCCCHHHHHHH
Q 001400 847 NVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE-TFARISGYCEQNDIHSPGLTVLESLLF 925 (1085)
Q Consensus 847 ~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~-~~~~~~gy~~Q~~~~~~~~tv~e~l~~ 925 (1085)
||||++++|+++||+|+||||||||+++|+|... +.+|+|.++|.++... ..++.++|++|++.+++.+|+.||+.+
T Consensus 17 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~ 94 (232)
T PRK10771 17 RFDLTVERGERVAILGPSGAGKSTLLNLIAGFLT--PASGSLTLNGQDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIGL 94 (232)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCeecCcCChhhccEEEEecccccccCCcHHHHHhc
Confidence 8999999999999999999999999999999866 5689999999875432 224579999999999999999999986
Q ss_pred hhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHH
Q 001400 926 SAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAA 1005 (1085)
Q Consensus 926 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEPtsgLD~~~~~ 1005 (1085)
...... . ......+.++++++.+++.+..+... ..||+|||||++|||||+.+|++|||||||+|||+.++.
T Consensus 95 ~~~~~~--~-~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~ 166 (232)
T PRK10771 95 GLNPGL--K-LNAAQREKLHAIARQMGIEDLLARLP-----GQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQ 166 (232)
T ss_pred cccccc--C-CCHHHHHHHHHHHHHcCcHHHHhCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHH
Confidence 532110 1 11233456788999999977666543 479999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHC-CceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCCC--chHHHHHHHHh
Q 001400 1006 IVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGS--KSCELIKYFEV 1067 (1085)
Q Consensus 1006 ~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~~--~~~~~~~~~~~ 1067 (1085)
.+.+.|+++.++ |+|||++||+++ ++.+.+|++++|++ |++++.|+..+ ....+.++|..
T Consensus 167 ~~~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-g~i~~~g~~~~~~~~~~~~~~~~~ 229 (232)
T PRK10771 167 EMLTLVSQVCQERQLTLLMVSHSLE-DAARIAPRSLVVAD-GRIAWDGPTDELLSGKASASALLG 229 (232)
T ss_pred HHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEeCCHHHHHhChhHHHHhhc
Confidence 999999998754 899999999986 46778999999985 78998887643 22344555533
|
|
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-35 Score=320.78 Aligned_cols=202 Identities=28% Similarity=0.409 Sum_probs=167.2
Q ss_pred cCCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCCh--hcccceEEEEc-cCCCCCC
Q 001400 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ--ETFARISGYCE-QNDIHSP 915 (1085)
Q Consensus 839 ~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~--~~~~~~~gy~~-Q~~~~~~ 915 (1085)
++.+.+|+|+||+|++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.+... ..+++.++|++ |.+.+++
T Consensus 31 ~~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~ 108 (236)
T cd03267 31 YREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQ--PTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWW 108 (236)
T ss_pred cCCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCEEccccchhhcccEEEEcCCccccCC
Confidence 355789999999999999999999999999999999999866 468999999986432 23456799997 5566778
Q ss_pred CCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCC
Q 001400 916 GLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEP 995 (1085)
Q Consensus 916 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEP 995 (1085)
.+|++|++.+....+. ....+..+.++++++.+++.+..+..+ ..||+|||||++||+||+.+|++|+||||
T Consensus 109 ~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrl~la~al~~~p~llllDEP 180 (236)
T cd03267 109 DLPVIDSFYLLAAIYD---LPPARFKKRLDELSELLDLEELLDTPV-----RQLSLGQRMRAEIAAALLHEPEILFLDEP 180 (236)
T ss_pred CCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhHhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 8999999987643321 122333445678899999877666543 47999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHC-CceEEEEecCccHHHHHhcCEEEEEecCcEEEEec
Q 001400 996 TSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAG 1052 (1085)
Q Consensus 996 tsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g 1052 (1085)
|+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|++++|.+ |++++.|
T Consensus 181 t~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~-G~i~~~g 236 (236)
T cd03267 181 TIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMK-DIEALARRVLVIDK-GRLLYDG 236 (236)
T ss_pred CCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHH-HHHHhCCEEEEEeC-CEEEecC
Confidence 9999999999999999998764 899999999986 46788999999985 6777654
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-35 Score=320.58 Aligned_cols=203 Identities=27% Similarity=0.390 Sum_probs=171.4
Q ss_pred CCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCChh-cccceEEEEccCCCCCCCCC
Q 001400 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE-TFARISGYCEQNDIHSPGLT 918 (1085)
Q Consensus 840 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~-~~~~~~gy~~Q~~~~~~~~t 918 (1085)
+++.+++|+||++++|++++|+|+||||||||+++|+|..+ +..|+|.++|.+.... ..++.+||++|++..++.+|
T Consensus 11 ~~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~--~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~t 88 (232)
T cd03300 11 GGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFET--PTSGEILLDGKDITNLPPHKRPVNTVFQNYALFPHLT 88 (232)
T ss_pred CCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEcCcCChhhcceEEEecccccCCCCc
Confidence 44579999999999999999999999999999999999876 4689999999876431 23467999999999888899
Q ss_pred HHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCC
Q 001400 919 VLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSG 998 (1085)
Q Consensus 919 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEPtsg 998 (1085)
++||+.+....+. .......+.++++++.+++.+..+... ..||+|||||++|||||+.+|++++|||||+|
T Consensus 89 ~~~nl~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS~G~~qrl~laral~~~p~llllDEP~~g 160 (232)
T cd03300 89 VFENIAFGLRLKK---LPKAEIKERVAEALDLVQLEGYANRKP-----SQLSGGQQQRVAIARALVNEPKVLLLDEPLGA 160 (232)
T ss_pred HHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence 9999987644331 122333456788999999987666543 57999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHC-CceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCC
Q 001400 999 LDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1085)
Q Consensus 999 LD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~ 1054 (1085)
||+.++..+.+.|+++.++ |+|||++||+++ ++.+.+|++++|++ |++++.|+.
T Consensus 161 LD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~-~~~~~~d~i~~l~~-G~~~~~~~~ 215 (232)
T cd03300 161 LDLKLRKDMQLELKRLQKELGITFVFVTHDQE-EALTMSDRIAVMNK-GKIQQIGTP 215 (232)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEEEC-CEEEecCCH
Confidence 9999999999999998764 899999999986 46788999999985 688888763
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-34 Score=356.64 Aligned_cols=124 Identities=25% Similarity=0.363 Sum_probs=100.3
Q ss_pred CCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcc-cccccCCCCCCCCCHHHHHHHHHHHHHhcCC---CEEE
Q 001400 916 GLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSL-SGALIGLPGINGLSTEQRKRLTIAVELVANP---SIVF 991 (1085)
Q Consensus 916 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p---~ill 991 (1085)
.+|+.|++.|...+. . .....+.++.++|..+ .+.. +..||||||||+.||++|+.+| +++|
T Consensus 791 ~ltv~E~l~~f~~~~---~------i~~~l~~L~~vgL~~l~l~~~-----~~tLSgGEkQRl~LAraL~~~p~~~~llI 856 (943)
T PRK00349 791 DMTVEEALEFFEAIP---K------IARKLQTLVDVGLGYIKLGQP-----ATTLSGGEAQRVKLAKELSKRSTGKTLYI 856 (943)
T ss_pred cCcHHHHHHHHHhch---h------hhHHHHHHHHCCCCcccccCC-----cccCCHHHHHHHHHHHHHhcCCCCCeEEE
Confidence 367888887754321 1 1123567888888653 3332 2579999999999999999999 9999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEe-----cCcEEEEecCCC
Q 001400 992 MDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMK-----RGGELIYAGPLG 1055 (1085)
Q Consensus 992 lDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~-----~gG~~~~~g~~~ 1055 (1085)
|||||+|||+.....+++.|+++.++|.|||+++|+++ ..+.+|+++.|. +||++++.|+..
T Consensus 857 LDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~--~i~~aD~ii~Lgp~~G~~~G~Iv~~Gt~~ 923 (943)
T PRK00349 857 LDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLD--VIKTADWIIDLGPEGGDGGGEIVATGTPE 923 (943)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH--HHHhCCEEEEecCCcCCCCCEEEEeCCHH
Confidence 99999999999999999999999888999999999975 446799999994 579999998753
|
|
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=340.11 Aligned_cols=195 Identities=27% Similarity=0.398 Sum_probs=167.3
Q ss_pred eeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCCh-------hcccceEEEEccCCCCCCCCCH
Q 001400 847 NVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ-------ETFARISGYCEQNDIHSPGLTV 919 (1085)
Q Consensus 847 ~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~-------~~~~~~~gy~~Q~~~~~~~~tv 919 (1085)
|+||+|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.. ...++.+||++|++.+++.+||
T Consensus 15 ~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~--p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv 92 (354)
T TIGR02142 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTR--PDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSV 92 (354)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCcH
Confidence 9999999999999999999999999999999876 468999999987532 1245679999999999999999
Q ss_pred HHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCC
Q 001400 920 LESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGL 999 (1085)
Q Consensus 920 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEPtsgL 999 (1085)
+||+.|+.... ......+.++++++.+++.+..+... .+||||||||++|||||+.+|++|||||||+||
T Consensus 93 ~enl~~~~~~~-----~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSgGqkqRvalAraL~~~p~lllLDEPts~L 162 (354)
T TIGR02142 93 RGNLRYGMKRA-----RPSERRISFERVIELLGIGHLLGRLP-----GRLSGGEKQRVAIGRALLSSPRLLLMDEPLAAL 162 (354)
T ss_pred HHHHHHHhhcc-----ChhHHHHHHHHHHHHcCChhHhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCC
Confidence 99998864321 11233456788999999987766543 579999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHC-CceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCC
Q 001400 1000 DARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1085)
Q Consensus 1000 D~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~ 1055 (1085)
|+.++..+++.|+++.++ |.|||++||+++ ++...+|++++|++ |+++..|+..
T Consensus 163 D~~~~~~l~~~L~~l~~~~g~tiiivtH~~~-~~~~~~d~i~~l~~-G~i~~~g~~~ 217 (354)
T TIGR02142 163 DDPRKYEILPYLERLHAEFGIPILYVSHSLQ-EVLRLADRVVVLED-GRVAAAGPIA 217 (354)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEeC-CEEEEECCHH
Confidence 999999999999999765 899999999986 57788999999985 7888888753
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-35 Score=316.76 Aligned_cols=198 Identities=24% Similarity=0.298 Sum_probs=165.6
Q ss_pred EeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCCh-hcccceEEEEccCCCCCCCCCHHHH
Q 001400 844 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ-ETFARISGYCEQNDIHSPGLTVLES 922 (1085)
Q Consensus 844 ~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~-~~~~~~~gy~~Q~~~~~~~~tv~e~ 922 (1085)
.++|+||++++|++++|+|+||||||||+++|+|..+ +.+|+|.++|.++.. ...++.++|++|++.+++.+|++||
T Consensus 13 ~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~en 90 (213)
T TIGR01277 13 LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIE--PASGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQN 90 (213)
T ss_pred cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEcccCChhccceEEEeccCccCCCCcHHHH
Confidence 3569999999999999999999999999999999876 468999999987643 2345679999999999989999999
Q ss_pred HHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHH
Q 001400 923 LLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDAR 1002 (1085)
Q Consensus 923 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEPtsgLD~~ 1002 (1085)
+.+...... . ........++++++.+++.+..+... ..||+|||||++|||||+.+|++++|||||+|||+.
T Consensus 91 ~~~~~~~~~--~-~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~ 162 (213)
T TIGR01277 91 IGLGLHPGL--K-LNAEQQEKVVDAAQQVGIADYLDRLP-----EQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPL 162 (213)
T ss_pred HHhHhhccC--C-ccHHHHHHHHHHHHHcCcHHHhhCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHH
Confidence 976532111 1 11123445778999999976665543 579999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHC-CceEEEEecCccHHHHHhcCEEEEEecCcEEEEecC
Q 001400 1003 AAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGP 1053 (1085)
Q Consensus 1003 ~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~ 1053 (1085)
++..+.+.|+++.++ |.|||++||+++ .+.+.+|++++|++ |+++..|+
T Consensus 163 ~~~~~~~~l~~~~~~~~~tii~vsh~~~-~~~~~~d~v~~l~~-g~i~~~~~ 212 (213)
T TIGR01277 163 LREEMLALVKQLCSERQRTLLMVTHHLS-DARAIASQIAVVSQ-GKIKVVSD 212 (213)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHhhcCeEEEEEC-CeEEEecC
Confidence 999999999998764 899999999986 46678999999974 78888765
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-35 Score=328.76 Aligned_cols=202 Identities=28% Similarity=0.354 Sum_probs=169.0
Q ss_pred eEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCCh-----hcccceEEEEccCCC-CCC
Q 001400 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ-----ETFARISGYCEQNDI-HSP 915 (1085)
Q Consensus 842 ~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~-----~~~~~~~gy~~Q~~~-~~~ 915 (1085)
..+|+||||+|++||++||+|+||||||||+++|+|... +.+|+|.++|.++.. ...++.++|++|++. .+.
T Consensus 15 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 92 (275)
T PRK13639 15 TEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILK--PTSGEVLIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLF 92 (275)
T ss_pred CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCccEEEECCEECccccchHHHHHhheEEEeeChhhhhc
Confidence 469999999999999999999999999999999999866 468999999987631 234567999999863 334
Q ss_pred CCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCC
Q 001400 916 GLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEP 995 (1085)
Q Consensus 916 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEP 995 (1085)
..||.||+.+..... .....+..+.+.++++.+++.+..+... ..||+|||||++|||||+.+|++|+||||
T Consensus 93 ~~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LS~Gq~qrv~laral~~~p~llllDEP 164 (275)
T PRK13639 93 APTVEEDVAFGPLNL---GLSKEEVEKRVKEALKAVGMEGFENKPP-----HHLSGGQKKRVAIAGILAMKPEIIVLDEP 164 (275)
T ss_pred cccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchhhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 579999998764321 1223334456788999999987766543 57999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCC
Q 001400 996 TSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1085)
Q Consensus 996 tsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~ 1055 (1085)
|+|||+.++..+++.|+++.++|.|||++||+++ .+.+.||++++|++ |++++.|+..
T Consensus 165 t~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~-~~~~~~d~i~~l~~-G~i~~~g~~~ 222 (275)
T PRK13639 165 TSGLDPMGASQIMKLLYDLNKEGITIIISTHDVD-LVPVYADKVYVMSD-GKIIKEGTPK 222 (275)
T ss_pred CcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEeCCHH
Confidence 9999999999999999999777999999999986 46778999999985 6888888754
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=358.28 Aligned_cols=220 Identities=22% Similarity=0.316 Sum_probs=179.1
Q ss_pred ccCCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCChh----cccceEEEEccCCCC
Q 001400 838 LEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE----TFARISGYCEQNDIH 913 (1085)
Q Consensus 838 ~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~----~~~~~~gy~~Q~~~~ 913 (1085)
.+++..+|+||||+|++||++||+||||||||||+++|+|..++++.+|+|.++|.++... ..++.+||++|++.+
T Consensus 14 ~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~ 93 (506)
T PRK13549 14 TFGGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERAGIAIIHQELAL 93 (506)
T ss_pred EeCCeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHCCeEEEEecccc
Confidence 3455679999999999999999999999999999999999865333689999999876431 234669999999988
Q ss_pred CCCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q 001400 914 SPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMD 993 (1085)
Q Consensus 914 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlD 993 (1085)
++.+||+||+.+....+...........+.++++++.+++.+..+..+ .+||||||||++|||||+.+|+|||||
T Consensus 94 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGqkqrv~la~al~~~p~lllLD 168 (506)
T PRK13549 94 VKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPV-----GNLGLGQQQLVEIAKALNKQARLLILD 168 (506)
T ss_pred CCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccch-----hhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 899999999988643221111122333456788999999977666543 579999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCCCc-hHHHHHH
Q 001400 994 EPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGSK-SCELIKY 1064 (1085)
Q Consensus 994 EPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~~~-~~~~~~~ 1064 (1085)
|||+|||+.++..+++.|+++.++|.|||++|||++ .+.+.||++++|++ |++++.|+..+. ..++++.
T Consensus 169 EPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~-~~~~~~d~v~~l~~-G~i~~~~~~~~~~~~~~~~~ 238 (506)
T PRK13549 169 EPTASLTESETAVLLDIIRDLKAHGIACIYISHKLN-EVKAISDTICVIRD-GRHIGTRPAAGMTEDDIITM 238 (506)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH-HHHHhcCEEEEEEC-CEEeeecccccCCHHHHHHH
Confidence 999999999999999999999877999999999986 46778999999985 689998887653 2334443
|
|
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=321.15 Aligned_cols=205 Identities=33% Similarity=0.506 Sum_probs=164.5
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCCCceEEEEccCCCCCCCCCHH
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVR 227 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 227 (1085)
+++|+|+|++|++||+++|+||||||||||+++|+|.+++..+.+|+|.++|+++.....++.++|++|++.+++.+||+
T Consensus 20 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 99 (226)
T cd03234 20 ARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKCVAYVRQDDILLPGLTVR 99 (226)
T ss_pred cccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhcccEEEeCCCCccCcCCcHH
Confidence 57999999999999999999999999999999999998721123999999998875434467899999999989999999
Q ss_pred HHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHH-HHHHhCCcccccccccCccccc
Q 001400 228 ETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEY-IMKILGLDTCADTLVGDEMLKG 306 (1085)
Q Consensus 228 E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~-~l~~lgL~~~~dt~vg~~~~~~ 306 (1085)
||+.|+.......... .+ .....++. .++.+++++..++. ++.
T Consensus 100 enl~~~~~~~~~~~~~---~~----------------------------~~~~~~~~~~l~~~~l~~~~~~~-----~~~ 143 (226)
T cd03234 100 ETLTYTAILRLPRKSS---DA----------------------------IRKKRVEDVLLRDLALTRIGGNL-----VKG 143 (226)
T ss_pred HHHHHHHHhhcccccc---hH----------------------------HHHHHHHHHHHHhhcchhhhccc-----ccC
Confidence 9999865432211000 00 00112344 78888887665554 456
Q ss_pred CchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecCh-hHHHhhcCeEEEecCCe
Q 001400 307 ISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPA-PEAYELFDDVILLSEGQ 385 (1085)
Q Consensus 307 LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~-~~~~~~~D~ii~L~~G~ 385 (1085)
|||||||||+|||+|+.+|++++|||||+|||+.++..+.+.++++.+. +.|+++ ++|.. .++.+++|++++|++|+
T Consensus 144 LS~G~~qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~-~~tiii-~sh~~~~~~~~~~d~i~~l~~G~ 221 (226)
T cd03234 144 ISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARR-NRIVIL-TIHQPRSDLFRLFDRILLLSSGE 221 (226)
T ss_pred cCHHHHHHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHC-CCEEEE-EecCCCHHHHHhCCEEEEEeCCE
Confidence 9999999999999999999999999999999999999999999988653 455555 55555 68999999999999999
Q ss_pred EEEec
Q 001400 386 IVYQG 390 (1085)
Q Consensus 386 iv~~G 390 (1085)
+++.|
T Consensus 222 i~~~g 226 (226)
T cd03234 222 IVYSG 226 (226)
T ss_pred EEecC
Confidence 99875
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-35 Score=316.75 Aligned_cols=198 Identities=26% Similarity=0.364 Sum_probs=164.8
Q ss_pred ccCCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCCh-------hcccceEEEEccC
Q 001400 838 LEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ-------ETFARISGYCEQN 910 (1085)
Q Consensus 838 ~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~-------~~~~~~~gy~~Q~ 910 (1085)
.++++.+ ||||+|++ |+++|+|+||||||||+++|+|... +.+|+|.++|.+... ...++.++|++|+
T Consensus 9 ~~~~~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~ 83 (214)
T cd03297 9 RLPDFTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEK--PDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQ 83 (214)
T ss_pred ecCCeee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEecccccchhhhhhHhhcEEEEecC
Confidence 3455555 99999999 9999999999999999999999866 468999999987531 1245679999999
Q ss_pred CCCCCCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEE
Q 001400 911 DIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIV 990 (1085)
Q Consensus 911 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~il 990 (1085)
+.+++.+|++||+.+..... .....++.++++++.+++.+..+.. +..||+|||||++|||||+.+|++|
T Consensus 84 ~~~~~~~t~~~~l~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~la~al~~~p~ll 153 (214)
T cd03297 84 YALFPHLNVRENLAFGLKRK-----RNREDRISVDELLDLLGLDHLLNRY-----PAQLSGGEKQRVALARALAAQPELL 153 (214)
T ss_pred CccCCCCCHHHHHHHHHhhC-----CHHHHHHHHHHHHHHcCCHhHhhcC-----cccCCHHHHHHHHHHHHHhcCCCEE
Confidence 98888999999998764221 1223345678899999987655543 3579999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHC-CceEEEEecCccHHHHHhcCEEEEEecCcEEEEec
Q 001400 991 FMDEPTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAG 1052 (1085)
Q Consensus 991 llDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g 1052 (1085)
+|||||+|||+.+++.+.+.|++++++ |+|||++||+++ ++.+.+|++++|++ |+++..|
T Consensus 154 llDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~g 214 (214)
T cd03297 154 LLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLS-EAEYLADRIVVMED-GRLQYIG 214 (214)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHH-HHHHhcCEEEEEEC-CEEEecC
Confidence 999999999999999999999999765 899999999986 46678999999985 6877654
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-35 Score=334.37 Aligned_cols=210 Identities=20% Similarity=0.254 Sum_probs=170.3
Q ss_pred CeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCC-eeeeEEEEcCccCCh---hc---c-cceEEEEccCC-
Q 001400 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGG-IIEGDIYISGYPKRQ---ET---F-ARISGYCEQND- 911 (1085)
Q Consensus 841 ~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~-~~~G~i~i~g~~~~~---~~---~-~~~~gy~~Q~~- 911 (1085)
...+|+||||+|++||++||+|+||||||||+++|+|...+. ..+|+|.++|.++.. .. + ++.++|++|++
T Consensus 28 ~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~ 107 (330)
T PRK09473 28 DVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKELNKLRAEQISMIFQDPM 107 (330)
T ss_pred CEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHHHHHhcCCEEEEEcCch
Confidence 357999999999999999999999999999999999986531 238999999987642 11 2 24799999998
Q ss_pred -CCCCCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEE
Q 001400 912 -IHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIV 990 (1085)
Q Consensus 912 -~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~il 990 (1085)
.+.|.+|+.+++.+...... .....+..+.+.++++.+++.+..+.... .+.+||||||||++|||||+.+|+||
T Consensus 108 ~~l~p~~~v~~~i~~~~~~~~--~~~~~~~~~~~~~~L~~vgL~~~~~~~~~--~p~~LSgG~~QRv~IArAL~~~P~ll 183 (330)
T PRK09473 108 TSLNPYMRVGEQLMEVLMLHK--GMSKAEAFEESVRMLDAVKMPEARKRMKM--YPHEFSGGMRQRVMIAMALLCRPKLL 183 (330)
T ss_pred hhcCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCCChHHHhcC--CcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 57789999999876543321 12334445667888999988653322212 23689999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHC-CceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCCC
Q 001400 991 FMDEPTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGS 1056 (1085)
Q Consensus 991 llDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~~ 1056 (1085)
|+||||++||+.++..+++.|+++.++ |.|||+||||++ .+.+.+|++++|. .|++++.|+..+
T Consensus 184 ilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~-~~~~~~Dri~vm~-~G~ive~g~~~~ 248 (330)
T PRK09473 184 IADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLG-VVAGICDKVLVMY-AGRTMEYGNARD 248 (330)
T ss_pred EEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHH-HHHHhCCEEEEEE-CCEEEEECCHHH
Confidence 999999999999999999999999765 899999999986 3667899999998 479999997543
|
|
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-35 Score=318.74 Aligned_cols=201 Identities=28% Similarity=0.353 Sum_probs=162.7
Q ss_pred eecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCC------CCceEEEEccCC--CC
Q 001400 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV------PPRTSAYVSQQD--WQ 220 (1085)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~------~~~~~~yv~Q~d--~~ 220 (1085)
++|+|+|+++++|++++|+|||||||||||++|+|.++|. +|+|.++|.++.... .++.++|++|++ .+
T Consensus 19 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 95 (228)
T cd03257 19 KALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPT---SGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSL 95 (228)
T ss_pred eeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEccccchhhHHHhhccEEEEecCchhhc
Confidence 6999999999999999999999999999999999998776 999999999875432 245799999998 45
Q ss_pred CCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCc-ccccccc
Q 001400 221 VAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLD-TCADTLV 299 (1085)
Q Consensus 221 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~v 299 (1085)
++.+||+||+.+.....+.... + + ......+++++.+||. ...+..+
T Consensus 96 ~~~~tv~~nl~~~~~~~~~~~~-~--------~-----------------------~~~~~~~~~l~~~~l~~~~~~~~~ 143 (228)
T cd03257 96 NPRMTIGEQIAEPLRIHGKLSK-K--------E-----------------------ARKEAVLLLLVGVGLPEEVLNRYP 143 (228)
T ss_pred CCcCCHHHHHHHHHHhccCCcH-H--------H-----------------------HHHHHHHHHHHHCCCChhHhhCCc
Confidence 6789999999876433211000 0 0 0011134678888985 4455444
Q ss_pred cCcccccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEE
Q 001400 300 GDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVI 379 (1085)
Q Consensus 300 g~~~~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii 379 (1085)
..|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++++.. +++|+.++|+.+++..++|+++
T Consensus 144 -----~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~-~~tii~~sH~~~~~~~~~d~i~ 217 (228)
T cd03257 144 -----HELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEEL-GLTLLFITHDLGVVAKIADRVA 217 (228)
T ss_pred -----hhcCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHhcCeEE
Confidence 4699999999999999999999999999999999999999999999987532 3456667888889999999999
Q ss_pred EecCCeEEEec
Q 001400 380 LLSEGQIVYQG 390 (1085)
Q Consensus 380 ~L~~G~iv~~G 390 (1085)
+|++|+++..|
T Consensus 218 ~l~~G~i~~~g 228 (228)
T cd03257 218 VMYAGKIVEEG 228 (228)
T ss_pred EEeCCEEEecC
Confidence 99999998765
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-35 Score=320.99 Aligned_cols=205 Identities=29% Similarity=0.395 Sum_probs=172.5
Q ss_pred cCCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCChh-cccceEEEEccCCCCCCCC
Q 001400 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE-TFARISGYCEQNDIHSPGL 917 (1085)
Q Consensus 839 ~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~-~~~~~~gy~~Q~~~~~~~~ 917 (1085)
+++..+|+|+||++.+||+++|+|+||||||||+++|+|..+ +..|+|.++|.++... ..++.++|++|++.+++..
T Consensus 10 ~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~i~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~ 87 (237)
T TIGR00968 10 FGSFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQ--PDSGRIRLNGQDATRVHARDRKIGFVFQHYALFKHL 87 (237)
T ss_pred ECCeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEcCcCChhhcCEEEEecChhhccCC
Confidence 345679999999999999999999999999999999999866 4689999999876532 2346799999999888899
Q ss_pred CHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCC
Q 001400 918 TVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTS 997 (1085)
Q Consensus 918 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEPts 997 (1085)
|+.||+.+....+. .......+.++++++.+++.+..+... ..||+||+||++|||+|+.+|++++|||||+
T Consensus 88 t~~enl~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS~G~~qrl~laral~~~p~llllDEP~~ 159 (237)
T TIGR00968 88 TVRDNIAFGLEIRK---HPKAKIKARVEELLELVQLEGLGDRYP-----NQLSGGQRQRVALARALAVEPQVLLLDEPFG 159 (237)
T ss_pred cHHHHHHhHHHhcC---CCHHHHHHHHHHHHHHcCCHhHhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 99999987654321 122233456788999999876666543 4799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHC-CceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCC
Q 001400 998 GLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1085)
Q Consensus 998 gLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~ 1055 (1085)
|||+.++..+.+.|+++.++ |+|||++||+++ ++.+.+|++++|++ |++++.|+.+
T Consensus 160 ~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~-~~~~~~d~i~~l~~-g~i~~~~~~~ 216 (237)
T TIGR00968 160 ALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQE-EAMEVADRIVVMSN-GKIEQIGSPD 216 (237)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHhhcCEEEEEEC-CEEEEecCHH
Confidence 99999999999999998765 899999999986 46788999999984 7888888754
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-36 Score=367.44 Aligned_cols=214 Identities=26% Similarity=0.400 Sum_probs=177.3
Q ss_pred cCCCcceeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCC---CceEEEEccCC
Q 001400 142 RGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP---PRTSAYVSQQD 218 (1085)
Q Consensus 142 ~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~---~~~~~yv~Q~d 218 (1085)
++.+++.+||+|+|+.|++|+.+||||||||||||.+.+|-..++|. +|.|.++|+++++... ++.+|.|+|+|
T Consensus 997 YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~---~G~V~IDg~dik~lnl~~LR~~i~lVsQEP 1073 (1228)
T KOG0055|consen 997 YPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPD---AGKVKIDGVDIKDLNLKWLRKQIGLVSQEP 1073 (1228)
T ss_pred CCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCC---CCeEEECCcccccCCHHHHHHhcceeccCc
Confidence 44567889999999999999999999999999999999999999886 9999999999988764 58899999999
Q ss_pred CCCCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCccccccc
Q 001400 219 WQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTL 298 (1085)
Q Consensus 219 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~ 298 (1085)
.+|.. |+||||.|+... -..+.+.++++. ++ ..+. +.+|++++||.
T Consensus 1074 ~LF~~-TIrENI~YG~~~----vs~~eIi~Aak~---AN-----------------------aH~F---I~sLP~GyDT~ 1119 (1228)
T KOG0055|consen 1074 VLFNG-TIRENIAYGSEE----VSEEEIIEAAKL---AN-----------------------AHNF---ISSLPQGYDTR 1119 (1228)
T ss_pred hhhcc-cHHHHHhccCCC----CCHHHHHHHHHH---hh-----------------------hHHH---HhcCcCcccCc
Confidence 97764 999999997211 111222222211 11 1112 45799999999
Q ss_pred ccCcccccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeE
Q 001400 299 VGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDV 378 (1085)
Q Consensus 299 vg~~~~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i 378 (1085)
||+++. +||||||||++||||++.||+||+|||.||+||+.+...+.+.|.+... ++|+|++. |- ..+..-+|.|
T Consensus 1120 vGerG~-QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~~--gRT~IvIA-HR-LSTIqnaD~I 1194 (1228)
T KOG0055|consen 1120 VGERGV-QLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAME--GRTTIVIA-HR-LSTIQNADVI 1194 (1228)
T ss_pred cCcccC-cCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhhc--CCcEEEEe-cc-hhhhhcCCEE
Confidence 998665 7999999999999999999999999999999999999999999998753 57777644 43 4567889999
Q ss_pred EEecCCeEEEecChhhHHH
Q 001400 379 ILLSEGQIVYQGPRVSVLD 397 (1085)
Q Consensus 379 i~L~~G~iv~~G~~~~~~~ 397 (1085)
+|+++|+|+++|++++++.
T Consensus 1195 ~Vi~~G~VvE~GtH~~L~~ 1213 (1228)
T KOG0055|consen 1195 AVLKNGKVVEQGTHDELLA 1213 (1228)
T ss_pred EEEECCEEEecccHHHHHh
Confidence 9999999999999999975
|
|
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=323.25 Aligned_cols=199 Identities=25% Similarity=0.343 Sum_probs=165.8
Q ss_pred CCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCCh---hcccceEEEEccCCCCCCC
Q 001400 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFARISGYCEQNDIHSPG 916 (1085)
Q Consensus 840 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gy~~Q~~~~~~~ 916 (1085)
++..+|+|+||+|++|++++|+|+||||||||+++|+|... +.+|+|.++|.++.. ..+++.++|++|++.+++
T Consensus 14 ~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~- 90 (241)
T PRK14250 14 FGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLID--PTEGSILIDGVDIKTIDVIDLRRKIGMVFQQPHLFE- 90 (241)
T ss_pred CCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEhhhcChHHhhhcEEEEecCchhch-
Confidence 44579999999999999999999999999999999999865 468999999987532 234567999999988776
Q ss_pred CCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCC-cccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCC
Q 001400 917 LTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELT-SLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEP 995 (1085)
Q Consensus 917 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEP 995 (1085)
.|++||+.+....+ . .....++++++.+++. +..+.. +..||+|||||++|||||+.+|++||||||
T Consensus 91 ~tv~e~l~~~~~~~---~----~~~~~~~~~l~~~~l~~~~~~~~-----~~~LS~G~~qrl~la~al~~~p~llllDEP 158 (241)
T PRK14250 91 GTVKDNIEYGPMLK---G----EKNVDVEYYLSIVGLNKEYATRD-----VKNLSGGEAQRVSIARTLANNPEVLLLDEP 158 (241)
T ss_pred hhHHHHHhcchhhc---C----cHHHHHHHHHHHcCCCHHHhhCC-----cccCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 69999997653221 1 1123567888999985 444443 357999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHC-CceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCC
Q 001400 996 TSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1085)
Q Consensus 996 tsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~ 1055 (1085)
|+|||+.++..+.+.|+++.++ |.|||++||+++ ++.+.+|++++|++ |+++..|+..
T Consensus 159 t~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~ 217 (241)
T PRK14250 159 TSALDPTSTEIIEELIVKLKNKMNLTVIWITHNME-QAKRIGDYTAFLNK-GILVEYAKTY 217 (241)
T ss_pred cccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHH-HHHHhCCEEEEEeC-CEEEEeCCHH
Confidence 9999999999999999998764 999999999986 46778999999985 6888887754
|
|
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=323.42 Aligned_cols=205 Identities=20% Similarity=0.337 Sum_probs=171.2
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCC-----CCCceEEEEccCCCCCC
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEF-----VPPRTSAYVSQQDWQVA 222 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~-----~~~~~~~yv~Q~d~~~~ 222 (1085)
+.+|+|+|+++++||+++|+||||||||||+++|+|.+++. +|+|.++|.++... ..++.++|++|++..++
T Consensus 14 ~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 90 (240)
T PRK09493 14 TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEIT---SGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFP 90 (240)
T ss_pred eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCChhHHHHhhceEEEecccccCC
Confidence 36999999999999999999999999999999999998776 99999999887542 12457999999998888
Q ss_pred CCCHHHHHHHhhhh-cCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccC
Q 001400 223 EMTVRETLDFAGQC-QGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGD 301 (1085)
Q Consensus 223 ~lTV~E~l~f~~~~-~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 301 (1085)
.+||+||+.|+... .+.. . ......++++++.+||+...+..+
T Consensus 91 ~~tv~~~l~~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~gl~~~~~~~~-- 134 (240)
T PRK09493 91 HLTALENVMFGPLRVRGAS----------K------------------------EEAEKQARELLAKVGLAERAHHYP-- 134 (240)
T ss_pred CCcHHHHHHhHHHHhcCCC----------H------------------------HHHHHHHHHHHHHcCChHHHhcCh--
Confidence 99999999875321 1100 0 001123678899999987666544
Q ss_pred cccccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEe
Q 001400 302 EMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILL 381 (1085)
Q Consensus 302 ~~~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L 381 (1085)
+.|||||||||+||+|++.+|++++|||||+|||..++..+.+.|+++.+. +++|+.++|+.+++..++|++++|
T Consensus 135 ---~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~--~~tiii~sH~~~~~~~~~d~i~~l 209 (240)
T PRK09493 135 ---SELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEE--GMTMVIVTHEIGFAEKVASRLIFI 209 (240)
T ss_pred ---hhcCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHhCCEEEEE
Confidence 469999999999999999999999999999999999999999999988643 455666788889999999999999
Q ss_pred cCCeEEEecChhhHH
Q 001400 382 SEGQIVYQGPRVSVL 396 (1085)
Q Consensus 382 ~~G~iv~~G~~~~~~ 396 (1085)
++|++++.|+.+++.
T Consensus 210 ~~G~i~~~g~~~~~~ 224 (240)
T PRK09493 210 DKGRIAEDGDPQVLI 224 (240)
T ss_pred ECCEEEeeCCHHHHh
Confidence 999999999987764
|
|
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-35 Score=335.02 Aligned_cols=211 Identities=16% Similarity=0.218 Sum_probs=168.1
Q ss_pred CeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCC--CeeeeEEEEcCccCCh---hc----ccceEEEEccCC
Q 001400 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTG--GIIEGDIYISGYPKRQ---ET----FARISGYCEQND 911 (1085)
Q Consensus 841 ~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~--~~~~G~i~i~g~~~~~---~~----~~~~~gy~~Q~~ 911 (1085)
...+|+||||+|++||++||+|+||||||||+++|+|.... .+.+|+|.++|.++.. .. +++.++|++|++
T Consensus 19 ~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~Q~~ 98 (330)
T PRK15093 19 WVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEP 98 (330)
T ss_pred CEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCc
Confidence 46799999999999999999999999999999999997642 2468999999987532 11 234799999997
Q ss_pred C--CCCCCCHHHHHHHhhhhcCCCc---ccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcC
Q 001400 912 I--HSPGLTVLESLLFSAWLRLPSE---IELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVAN 986 (1085)
Q Consensus 912 ~--~~~~~tv~e~l~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~ 986 (1085)
. +.|.+||.+++.+......... ....+..+.+.++++.++|.+..+..... +.+|||||||||+|||||+.+
T Consensus 99 ~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~--p~~LSgG~~QRv~iArAL~~~ 176 (330)
T PRK15093 99 QSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSF--PYELTEGECQKVMIAIALANQ 176 (330)
T ss_pred chhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCC--chhCCHHHHHHHHHHHHHHCC
Confidence 6 5688999999975322110000 01123345678999999997532211112 358999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCC
Q 001400 987 PSIVFMDEPTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1085)
Q Consensus 987 p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~ 1055 (1085)
|+||||||||+|||+.++..++++|+++.++ |.|||+||||++ .+.+.+|++++|.+ |++++.|+..
T Consensus 177 P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~-~v~~~~dri~vm~~-G~ive~g~~~ 244 (330)
T PRK15093 177 PRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQ-MLSQWADKINVLYC-GQTVETAPSK 244 (330)
T ss_pred CCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEECCHH
Confidence 9999999999999999999999999999764 999999999986 46688999999984 7999998754
|
|
| >COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=292.22 Aligned_cols=206 Identities=25% Similarity=0.361 Sum_probs=177.7
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCCCceEEEEccCCCCCCCCCHH
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVR 227 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 227 (1085)
+.+|+|+|+.|.+|+.++++||||||||||||+++|..+|. .|+|.+||.+++- |...-|.|+|++.++|-+||.
T Consensus 18 ~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~---~G~i~l~~r~i~g--PgaergvVFQ~~~LlPWl~~~ 92 (259)
T COG4525 18 RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPS---RGSIQLNGRRIEG--PGAERGVVFQNEALLPWLNVI 92 (259)
T ss_pred hhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcc---cceEEECCEeccC--CCccceeEeccCccchhhHHH
Confidence 56999999999999999999999999999999999999886 9999999998764 333458999999999999999
Q ss_pred HHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCcccccC
Q 001400 228 ETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGI 307 (1085)
Q Consensus 228 E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 307 (1085)
+|++|+.++.|..+. .| ..++.+.+...||+...+.. +-+|
T Consensus 93 dNvafgL~l~Gi~k~-------~R---------------------------~~~a~q~l~~VgL~~~~~~~-----i~qL 133 (259)
T COG4525 93 DNVAFGLQLRGIEKA-------QR---------------------------REIAHQMLALVGLEGAEHKY-----IWQL 133 (259)
T ss_pred HHHHHHHHhcCCCHH-------HH---------------------------HHHHHHHHHHhCcccccccc-----eEee
Confidence 999999998876432 11 22467788999999876654 4579
Q ss_pred chhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEec--CCe
Q 001400 308 SGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLS--EGQ 385 (1085)
Q Consensus 308 SGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~--~G~ 385 (1085)
||||||||.|||||..+|+.|+||||+.+||.-++.++.+.|-++.+..++. ++.++|+.+|+.-+++++++|+ .|+
T Consensus 134 SGGmrQRvGiARALa~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~-~lliTH~ieEAlflatrLvvlsp~pgR 212 (259)
T COG4525 134 SGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQ-VLLITHDIEEALFLATRLVVLSPGPGR 212 (259)
T ss_pred cchHHHHHHHHHHhhcCcceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCe-EEEEeccHHHHHhhhheeEEecCCCce
Confidence 9999999999999999999999999999999999999999999988776554 5558899999999999999997 489
Q ss_pred EEEecChhhHHHH
Q 001400 386 IVYQGPRVSVLDF 398 (1085)
Q Consensus 386 iv~~G~~~~~~~~ 398 (1085)
|+..=+.+-...|
T Consensus 213 vv~~~~~df~rR~ 225 (259)
T COG4525 213 VVERLPLDFARRY 225 (259)
T ss_pred eeEecCCCHHHHh
Confidence 9987776644443
|
|
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-35 Score=332.01 Aligned_cols=207 Identities=20% Similarity=0.228 Sum_probs=174.0
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCC------CCceEEEEccCC--C
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV------PPRTSAYVSQQD--W 219 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~------~~~~~~yv~Q~d--~ 219 (1085)
+.+|+|||+.|++||+++|+|+||||||||+++|+|.+++. +|+|.++|.++.... .++.++||+|++ .
T Consensus 28 ~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~---~G~i~~~g~~l~~~~~~~~~~~r~~i~~v~Q~~~~~ 104 (327)
T PRK11308 28 VKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPT---GGELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGS 104 (327)
T ss_pred eeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCC---CcEEEECCEEcCcCCHHHHHHHhCCEEEEEcCchhh
Confidence 57999999999999999999999999999999999998775 899999999876542 245799999997 5
Q ss_pred CCCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcc-ccccc
Q 001400 220 QVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDT-CADTL 298 (1085)
Q Consensus 220 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~-~~dt~ 298 (1085)
+.+.+||.+++.+..+...... . .+...++.++++.+||+. .+++.
T Consensus 105 l~p~~~v~~~l~~~~~~~~~~~---------~------------------------~~~~~~~~~~l~~~gL~~~~~~~~ 151 (327)
T PRK11308 105 LNPRKKVGQILEEPLLINTSLS---------A------------------------AERREKALAMMAKVGLRPEHYDRY 151 (327)
T ss_pred cCCccCHHHHHHHHHHHccCCC---------H------------------------HHHHHHHHHHHHHCCCChHHhcCC
Confidence 7889999999977543321000 0 001234788999999963 45554
Q ss_pred ccCcccccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeE
Q 001400 299 VGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDV 378 (1085)
Q Consensus 299 vg~~~~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i 378 (1085)
+..|||||||||+||+||+.+|++|++||||+|||..++.+|++.|+++.+.. +++++.++|+...+..++|+|
T Consensus 152 -----p~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~-g~til~iTHdl~~~~~~adrv 225 (327)
T PRK11308 152 -----PHMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQEL-GLSYVFISHDLSVVEHIADEV 225 (327)
T ss_pred -----CccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHhCCEE
Confidence 45799999999999999999999999999999999999999999999987643 456777899999999999999
Q ss_pred EEecCCeEEEecChhhHH
Q 001400 379 ILLSEGQIVYQGPRVSVL 396 (1085)
Q Consensus 379 i~L~~G~iv~~G~~~~~~ 396 (1085)
++|++|++++.|+.+++.
T Consensus 226 ~vm~~G~ive~g~~~~~~ 243 (327)
T PRK11308 226 MVMYLGRCVEKGTKEQIF 243 (327)
T ss_pred EEEECCEEEEECCHHHHh
Confidence 999999999999998875
|
|
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-35 Score=311.37 Aligned_cols=196 Identities=31% Similarity=0.580 Sum_probs=160.2
Q ss_pred eeeeccceeeeeccccccccccccCCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCC-eeeeEEEEcCcc
Q 001400 816 SMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGG-IIEGDIYISGYP 894 (1085)
Q Consensus 816 ~~~~~~~~y~v~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~-~~~G~i~i~g~~ 894 (1085)
.++|+|++|.++.. .++..+|+|+||+|++||+++|+|+||||||||+++|+|...+. +.+|+|.++|.+
T Consensus 3 ~~~~~~~~~~~~~~---------~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~ 73 (202)
T cd03233 3 TLSWRNISFTTGKG---------RSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIP 73 (202)
T ss_pred eEEEEccEEEeccC---------CCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEE
Confidence 46788888877432 13567999999999999999999999999999999999976522 568999999987
Q ss_pred CCh--hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHH
Q 001400 895 KRQ--ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTE 972 (1085)
Q Consensus 895 ~~~--~~~~~~~gy~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~G 972 (1085)
... ...++.++|++|++.+++.+||+||+.+..... .+.. +..||+|
T Consensus 74 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--------------------------~~~~-----~~~LS~G 122 (202)
T cd03233 74 YKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCK--------------------------GNEF-----VRGISGG 122 (202)
T ss_pred CccchhhhcceEEEEecccccCCCCcHHHHHhhhhhhc--------------------------cccc-----hhhCCHH
Confidence 643 235667999999999999999999997653110 1111 2479999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CceEEEEecCccHHHHHhcCEEEEEecCcEEEEe
Q 001400 973 QRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYA 1051 (1085)
Q Consensus 973 qrqrl~iA~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~ 1051 (1085)
||||++|||||+.+|++|||||||+|||+.+++.+++.|+++.++ +.|+|+++|+...++.+.+|++++|++ |++++.
T Consensus 123 e~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~-G~i~~~ 201 (202)
T cd03233 123 ERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYE-GRQIYY 201 (202)
T ss_pred HHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEEC-CEEEec
Confidence 999999999999999999999999999999999999999998765 677777665532357788999999985 688765
Q ss_pred c
Q 001400 1052 G 1052 (1085)
Q Consensus 1052 g 1052 (1085)
|
T Consensus 202 g 202 (202)
T cd03233 202 G 202 (202)
T ss_pred C
Confidence 4
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-35 Score=321.42 Aligned_cols=206 Identities=23% Similarity=0.365 Sum_probs=169.3
Q ss_pred eecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCC--CceeeEEEECCccCCCC-----CCCceEEEEccCCCCC
Q 001400 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHH--LQVSGKITYNGHGFKEF-----VPPRTSAYVSQQDWQV 221 (1085)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~--~~~~G~i~~~G~~~~~~-----~~~~~~~yv~Q~d~~~ 221 (1085)
.+|+|+|++|++||+++|+|||||||||||++|+|.++|. ...+|+|.++|.++... ..++.++|++|++.++
T Consensus 15 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~ 94 (247)
T TIGR00972 15 EALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPF 94 (247)
T ss_pred eeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHHHhheEEEecCcccC
Confidence 5999999999999999999999999999999999998753 12389999999987542 1246799999999888
Q ss_pred CCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCc----ccccc
Q 001400 222 AEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLD----TCADT 297 (1085)
Q Consensus 222 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~----~~~dt 297 (1085)
+ +||+||+.+.....+.... ......++.+++.+||. +..++
T Consensus 95 ~-~tv~e~l~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~~ 140 (247)
T TIGR00972 95 P-MSIYDNIAYGPRLHGIKDK---------------------------------KELDEIVEESLKKAALWDEVKDRLHD 140 (247)
T ss_pred C-CCHHHHHHhHHHhcCCCCH---------------------------------HHHHHHHHHHHHHcCCCcchhhHhhC
Confidence 8 9999999886433210000 00112367788999997 44454
Q ss_pred cccCcccccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCe
Q 001400 298 LVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDD 377 (1085)
Q Consensus 298 ~vg~~~~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ 377 (1085)
. ++.|||||||||+|||||+.+|++++|||||+|||+.++..+.+.|+++++ + .+|+.++|+..++.+++|+
T Consensus 141 ~-----~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~-~tiiivsH~~~~~~~~~d~ 212 (247)
T TIGR00972 141 S-----ALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKK--K-YTIVIVTHNMQQAARISDR 212 (247)
T ss_pred C-----cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--c-CeEEEEecCHHHHHHhCCE
Confidence 3 457999999999999999999999999999999999999999999999865 3 4566688999999999999
Q ss_pred EEEecCCeEEEecChhhHH
Q 001400 378 VILLSEGQIVYQGPRVSVL 396 (1085)
Q Consensus 378 ii~L~~G~iv~~G~~~~~~ 396 (1085)
+++|++|++++.|+.+++.
T Consensus 213 i~~l~~G~i~~~~~~~~~~ 231 (247)
T TIGR00972 213 TAFFYDGELVEYGPTEQIF 231 (247)
T ss_pred EEEEECCEEEEeCCHHHHH
Confidence 9999999999999987763
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-35 Score=331.18 Aligned_cols=201 Identities=20% Similarity=0.287 Sum_probs=165.0
Q ss_pred EEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCC--------hhcccceEEEEccCCCC-
Q 001400 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKR--------QETFARISGYCEQNDIH- 913 (1085)
Q Consensus 843 ~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~--------~~~~~~~~gy~~Q~~~~- 913 (1085)
.+|+||||+|++||++||+|+||||||||+++|+|..+ +.+|+|.++|.++. ...+++.++|++|++..
T Consensus 25 ~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~~~~~~~~~~~~~~~i~~v~q~~~~~ 102 (289)
T PRK13645 25 KALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLII--SETGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQ 102 (289)
T ss_pred ceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEEccccccccccHHHHhccEEEEEeCcchh
Confidence 59999999999999999999999999999999999876 46899999998752 12345679999999742
Q ss_pred CCCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCC-cccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q 001400 914 SPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELT-SLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFM 992 (1085)
Q Consensus 914 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illl 992 (1085)
....|++||+.|..... ........+.++++++.+++. +..+.. +..||+|||||++|||||+.+|++|||
T Consensus 103 ~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~ll~~~~L~~~~~~~~-----~~~LS~Gq~qrv~laral~~~p~lLlL 174 (289)
T PRK13645 103 LFQETIEKDIAFGPVNL---GENKQEAYKKVPELLKLVQLPEDYVKRS-----PFELSGGQKRRVALAGIIAMDGNTLVL 174 (289)
T ss_pred hhhhHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhHhcCC-----hhhCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 23469999998764322 112233345577888988884 455543 357999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHH-CCceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCC
Q 001400 993 DEPTSGLDARAAAIVMRTVRNIVN-TGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1085)
Q Consensus 993 DEPtsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~ 1055 (1085)
||||+|||+.++..+++.|+++.+ .|+|||++||+++ ++.+.||++++|++ |++++.|+..
T Consensus 175 DEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~-~~~~~~d~i~~l~~-G~i~~~g~~~ 236 (289)
T PRK13645 175 DEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMD-QVLRIADEVIVMHE-GKVISIGSPF 236 (289)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEeCCHH
Confidence 999999999999999999999876 4899999999986 47788999999985 6888888753
|
|
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-35 Score=324.61 Aligned_cols=205 Identities=21% Similarity=0.308 Sum_probs=170.3
Q ss_pred eecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCC-----------CCCceEEEEccC
Q 001400 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEF-----------VPPRTSAYVSQQ 217 (1085)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~-----------~~~~~~~yv~Q~ 217 (1085)
.+|+|+|++|++|++++|+||||||||||+++|+|.+++. +|+|.++|.++... ..++.++|++|+
T Consensus 17 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~q~ 93 (250)
T PRK11264 17 TVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPE---AGTIRVGDITIDTARSLSQQKGLIRQLRQHVGFVFQN 93 (250)
T ss_pred eeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEccccccccchhhHHHHhhhhEEEEecC
Confidence 5999999999999999999999999999999999998776 99999999876532 123579999999
Q ss_pred CCCCCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccc
Q 001400 218 DWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADT 297 (1085)
Q Consensus 218 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 297 (1085)
+.+++.+||+||+.++..... +... ......++++++.+||+...|+
T Consensus 94 ~~~~~~~tv~e~l~~~~~~~~-~~~~--------------------------------~~~~~~~~~~l~~~gl~~~~~~ 140 (250)
T PRK11264 94 FNLFPHRTVLENIIEGPVIVK-GEPK--------------------------------EEATARARELLAKVGLAGKETS 140 (250)
T ss_pred cccCCCCCHHHHHHHHHHHhc-CCCH--------------------------------HHHHHHHHHHHHHcCCcchhhC
Confidence 988888999999987532110 0000 0011236778899999876665
Q ss_pred cccCcccccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCe
Q 001400 298 LVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDD 377 (1085)
Q Consensus 298 ~vg~~~~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ 377 (1085)
.+ +.|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++.+. +.+|+.++|+.+++.+++|+
T Consensus 141 ~~-----~~LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~--~~tvi~~tH~~~~~~~~~d~ 213 (250)
T PRK11264 141 YP-----RRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQE--KRTMVIVTHEMSFARDVADR 213 (250)
T ss_pred Ch-----hhCChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhc--CCEEEEEeCCHHHHHHhcCE
Confidence 44 569999999999999999999999999999999999999999999998753 44566688999999999999
Q ss_pred EEEecCCeEEEecChhhHH
Q 001400 378 VILLSEGQIVYQGPRVSVL 396 (1085)
Q Consensus 378 ii~L~~G~iv~~G~~~~~~ 396 (1085)
+++|++|++++.|+.+++.
T Consensus 214 i~~l~~G~i~~~~~~~~~~ 232 (250)
T PRK11264 214 AIFMDQGRIVEQGPAKALF 232 (250)
T ss_pred EEEEECCEEEEeCCHHHHh
Confidence 9999999999999987663
|
|
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-35 Score=317.22 Aligned_cols=196 Identities=20% Similarity=0.337 Sum_probs=161.0
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCC-------CceEEEEccCCCC
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP-------PRTSAYVSQQDWQ 220 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~-------~~~~~yv~Q~d~~ 220 (1085)
+++|+|+|+.+++|++++|+|||||||||||++|+|.+++. +|+|.++|.++..... ++.++|++|++.+
T Consensus 18 ~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~ 94 (221)
T TIGR02211 18 TRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPT---SGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHL 94 (221)
T ss_pred eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEhhhcCHhHHHHHHHhcEEEEeccccc
Confidence 46999999999999999999999999999999999998876 9999999988755322 1469999999988
Q ss_pred CCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCccccccccc
Q 001400 221 VAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVG 300 (1085)
Q Consensus 221 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 300 (1085)
++.+||+||+.+......... . +....+.++++.+||++..+..+
T Consensus 95 ~~~~tv~~~l~~~~~~~~~~~----------~------------------------~~~~~~~~~l~~~~l~~~~~~~~- 139 (221)
T TIGR02211 95 LPDFTALENVAMPLLIGKKSV----------K------------------------EAKERAYEMLEKVGLEHRINHRP- 139 (221)
T ss_pred CCCCcHHHHHHHHHHhcCCCH----------H------------------------HHHHHHHHHHHHcCChhhhhCCh-
Confidence 889999999988543211000 0 00123667889999987666554
Q ss_pred CcccccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEE
Q 001400 301 DEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVIL 380 (1085)
Q Consensus 301 ~~~~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~ 380 (1085)
..|||||||||+||++|+.+|++|+|||||+|||..++..+.+.|+++++..+ .+|+.++|+..++. .+|++++
T Consensus 140 ----~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~-~tii~~tH~~~~~~-~~d~v~~ 213 (221)
T TIGR02211 140 ----SELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELN-TSFLVVTHDLELAK-KLDRVLE 213 (221)
T ss_pred ----hhCCHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcC-CEEEEEeCCHHHHh-hcCEEEE
Confidence 46999999999999999999999999999999999999999999999875434 45555777777775 4799999
Q ss_pred ecCCeEE
Q 001400 381 LSEGQIV 387 (1085)
Q Consensus 381 L~~G~iv 387 (1085)
|++|+++
T Consensus 214 l~~G~i~ 220 (221)
T TIGR02211 214 MKDGQLF 220 (221)
T ss_pred EeCCEec
Confidence 9999985
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-34 Score=366.78 Aligned_cols=135 Identities=21% Similarity=0.331 Sum_probs=105.8
Q ss_pred CCCCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcc-cccccCCCCCCCCCHHHHHHHHHHHHHh---cCCC
Q 001400 913 HSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSL-SGALIGLPGINGLSTEQRKRLTIAVELV---ANPS 988 (1085)
Q Consensus 913 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~~~~~~~~LS~Gqrqrl~iA~aL~---~~p~ 988 (1085)
.+...||.|+|.++..-.........+..+.+ ++++.+++..+ .+.. +..||||||||++||++|+ .+|+
T Consensus 759 ~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l-~~L~~vGL~~l~l~q~-----~~tLSGGE~QRV~LAraL~~~~~~P~ 832 (1809)
T PRK00635 759 RYKGKNIADILEMTAYEAEKFFLDEPSIHEKI-HALCSLGLDYLPLGRP-----LSSLSGGEIQRLKLAYELLAPSKKPT 832 (1809)
T ss_pred ccCCCCHHHHHHcCHHHHHHcccChHHHHHHH-HHHHHcCCcchhhcCc-----cccCCHHHHHHHHHHHHHhhcCCCCC
Confidence 44578999999876532111111122333445 47888888765 4443 2579999999999999998 6999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEe-----cCcEEEEecCCC
Q 001400 989 IVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMK-----RGGELIYAGPLG 1055 (1085)
Q Consensus 989 illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~-----~gG~~~~~g~~~ 1055 (1085)
++||||||+|||+.+...+++.|++++++|.|||+++|+++. + +.+|++++|. .||++++.|+..
T Consensus 833 LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~~-i-~~aDrVi~L~p~gg~~~G~iv~~Gtpe 902 (1809)
T PRK00635 833 LYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMHV-V-KVADYVLELGPEGGNLGGYLLASCSPE 902 (1809)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-H-HhCCEEEEEccCCCCCCCEEEEeCCHH
Confidence 999999999999999999999999998889999999999863 4 8899999995 368999998764
|
|
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-35 Score=328.34 Aligned_cols=206 Identities=26% Similarity=0.350 Sum_probs=171.0
Q ss_pred eecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCC-----CCCceEEEEccCCC-CCC
Q 001400 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEF-----VPPRTSAYVSQQDW-QVA 222 (1085)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~-----~~~~~~~yv~Q~d~-~~~ 222 (1085)
.+|+|+|++|++||+++|+||||||||||+++|+|.++|. +|+|.++|+++... ..++.++|++|++. .+.
T Consensus 20 ~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~---~G~i~i~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~ 96 (283)
T PRK13636 20 HALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPS---SGRILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLF 96 (283)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ccEEEECCEECCCCcchHHHHHhhEEEEecCcchhhc
Confidence 5999999999999999999999999999999999998876 99999999987421 12357999999973 345
Q ss_pred CCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCc
Q 001400 223 EMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDE 302 (1085)
Q Consensus 223 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 302 (1085)
..||+||+.+.....+... . .....++++++.+||.+..++.+
T Consensus 97 ~~tv~e~l~~~~~~~~~~~----------~------------------------~~~~~~~~~l~~~gL~~~~~~~~--- 139 (283)
T PRK13636 97 SASVYQDVSFGAVNLKLPE----------D------------------------EVRKRVDNALKRTGIEHLKDKPT--- 139 (283)
T ss_pred cccHHHHHHhHHHHcCCCH----------H------------------------HHHHHHHHHHHHCCChhhhhCCc---
Confidence 6799999988543221100 0 01124788899999987776554
Q ss_pred ccccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEec
Q 001400 303 MLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLS 382 (1085)
Q Consensus 303 ~~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~ 382 (1085)
+.||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|+++++.. +++|+.++|+.+++..+||++++|+
T Consensus 140 --~~LS~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~-g~tillvsH~~~~~~~~~dri~~l~ 216 (283)
T PRK13636 140 --HCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKEL-GLTIIIATHDIDIVPLYCDNVFVMK 216 (283)
T ss_pred --ccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhC-CCEEEEEecCHHHHHHhCCEEEEEE
Confidence 5699999999999999999999999999999999999999999999987643 4556668899999999999999999
Q ss_pred CCeEEEecChhhHHH
Q 001400 383 EGQIVYQGPRVSVLD 397 (1085)
Q Consensus 383 ~G~iv~~G~~~~~~~ 397 (1085)
+|++++.|+.+++..
T Consensus 217 ~G~i~~~g~~~~~~~ 231 (283)
T PRK13636 217 EGRVILQGNPKEVFA 231 (283)
T ss_pred CCEEEEeCCHHHHhc
Confidence 999999999887753
|
|
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-35 Score=327.34 Aligned_cols=208 Identities=23% Similarity=0.279 Sum_probs=165.6
Q ss_pred CCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCC---CeeeeEEEEcCccCC-----hhcccceEEEEccCC
Q 001400 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTG---GIIEGDIYISGYPKR-----QETFARISGYCEQND 911 (1085)
Q Consensus 840 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~---~~~~G~i~i~g~~~~-----~~~~~~~~gy~~Q~~ 911 (1085)
++..+|+|+||+|++||+++|+|+||||||||+++|+|.... .+.+|+|.++|.++. ...+++.++|++|++
T Consensus 24 ~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~~~~~~~i~~v~q~~ 103 (269)
T PRK14259 24 GTFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQP 103 (269)
T ss_pred CCEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCHHHHhhceEEEccCC
Confidence 445799999999999999999999999999999999997541 136899999998753 223456799999999
Q ss_pred CCCCCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEE
Q 001400 912 IHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVF 991 (1085)
Q Consensus 912 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~ill 991 (1085)
.+++. |++||+.+....+. .. ....+.++++++.+++......... ..+..||+|||||++|||||+.+|++||
T Consensus 104 ~l~~~-tv~enl~~~~~~~~---~~-~~~~~~~~~~l~~~~l~~~l~~~~~-~~~~~LS~G~~qrl~laral~~~p~lll 177 (269)
T PRK14259 104 NPFPK-SIYENIAFGARING---YT-GDMDELVERSLRKAAVWDECKDKLN-ESGYSLSGGQQQRLCIARTIAIEPEVIL 177 (269)
T ss_pred ccchh-hHHHHHhhhhhhcC---Cc-HHHHHHHHHHHHHhCCcchhhhhhC-CCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 88874 99999987653321 11 1223456677888876421111111 1235799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEec----------CcEEEEecCCC
Q 001400 992 MDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKR----------GGELIYAGPLG 1055 (1085)
Q Consensus 992 lDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~----------gG~~~~~g~~~ 1055 (1085)
|||||+|||+.++..++++|++++ ++.|||++||+++ ++.+.||++++|++ +|++++.|+.+
T Consensus 178 LDEPt~gLD~~~~~~l~~~l~~~~-~~~tiiivtH~~~-~~~~~~d~i~~l~~~~~~~~~~g~~g~~~~~~~~~ 249 (269)
T PRK14259 178 MDEPCSALDPISTLKIEETMHELK-KNFTIVIVTHNMQ-QAVRVSDMTAFFNAEEVEGGSGGKVGYLVEFNETK 249 (269)
T ss_pred EcCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCHH-HHHHhcCEEEEEeccccccccccccceEEEeCCHH
Confidence 999999999999999999999985 4799999999986 57789999999985 36789988764
|
|
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-35 Score=326.71 Aligned_cols=203 Identities=21% Similarity=0.310 Sum_probs=167.5
Q ss_pred eEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCCh---hcccceEEEEccCCC--CCCC
Q 001400 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFARISGYCEQNDI--HSPG 916 (1085)
Q Consensus 842 ~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gy~~Q~~~--~~~~ 916 (1085)
..+|+|+||+|++||++||+||||||||||+++|+|..+ +.+|+|.++|.++.. ...++.++|++|++. +++.
T Consensus 26 ~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~ 103 (267)
T PRK15112 26 VEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIE--PTSGELLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLNPR 103 (267)
T ss_pred cceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCC--CCCCEEEECCEECCCCchhhHhccEEEEecCchhhcCcc
Confidence 469999999999999999999999999999999999876 568999999987642 123457999999875 5678
Q ss_pred CCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCC-cccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCC
Q 001400 917 LTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELT-SLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEP 995 (1085)
Q Consensus 917 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEP 995 (1085)
+|+.+++.+...... ........+.++++++.+++. ...+.. +..||+|||||++|||||+.+|+|||||||
T Consensus 104 ~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LS~G~~qrv~laral~~~p~lllLDEP 176 (267)
T PRK15112 104 QRISQILDFPLRLNT--DLEPEQREKQIIETLRQVGLLPDHASYY-----PHMLAPGQKQRLGLARALILRPKVIIADEA 176 (267)
T ss_pred hhHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCCChHHHhcC-----chhcCHHHHHHHHHHHHHHhCCCEEEEcCC
Confidence 899999987643321 112233345678899999984 444433 257999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHC-CceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCC
Q 001400 996 TSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1085)
Q Consensus 996 tsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~ 1055 (1085)
|+|||+.++..+.+.|+++.++ |.|||++||+++ ++...||++++|++ |++++.|+..
T Consensus 177 t~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~ 235 (267)
T PRK15112 177 LASLDMSMRSQLINLMLELQEKQGISYIYVTQHLG-MMKHISDQVLVMHQ-GEVVERGSTA 235 (267)
T ss_pred cccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHH-HHHHhcCEEEEEEC-CEEEecCCHH
Confidence 9999999999999999999764 899999999986 46677999999985 7888888754
|
|
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-35 Score=320.38 Aligned_cols=206 Identities=25% Similarity=0.386 Sum_probs=170.0
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCC--CceEEEEccCCCCCCCCC
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP--PRTSAYVSQQDWQVAEMT 225 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~--~~~~~yv~Q~d~~~~~lT 225 (1085)
+.+|+|+|+.|++|++++|+||||||||||+++|+|.++|. +|+|.++|.++..... .+.++|++|++.+++.+|
T Consensus 14 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~i~~~~~~~~~~i~~~~q~~~~~~~~t 90 (236)
T TIGR03864 14 RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQ---EGQISVAGHDLRRAPRAALARLGVVFQQPTLDLDLS 90 (236)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCEEcccCChhhhhhEEEeCCCCCCcccCc
Confidence 46999999999999999999999999999999999998876 9999999987754321 257999999988888999
Q ss_pred HHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCcccc
Q 001400 226 VRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLK 305 (1085)
Q Consensus 226 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 305 (1085)
|+||+.+.....+... ......++++++.+||++..++.++
T Consensus 91 ~~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gl~~~~~~~~~----- 131 (236)
T TIGR03864 91 VRQNLRYHAALHGLSR----------------------------------AEARERIAALLARLGLAERADDKVR----- 131 (236)
T ss_pred HHHHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCChhhhcCChh-----
Confidence 9999987543221000 0001236778889999877776554
Q ss_pred cCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEecCCe
Q 001400 306 GISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQ 385 (1085)
Q Consensus 306 ~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~~G~ 385 (1085)
.||||||||++||+||+.+|++++|||||+|||+.++..+.+.|+++++.. +++++.++|..+++.. +|++++|++|+
T Consensus 132 ~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~-~~tiii~sH~~~~~~~-~d~i~~l~~G~ 209 (236)
T TIGR03864 132 ELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQ-GLSVLWATHLVDEIEA-DDRLVVLHRGR 209 (236)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhC-CCEEEEEecChhhHhh-CCEEEEEeCCe
Confidence 699999999999999999999999999999999999999999999987533 3456667788888864 99999999999
Q ss_pred EEEecChhhHHH
Q 001400 386 IVYQGPRVSVLD 397 (1085)
Q Consensus 386 iv~~G~~~~~~~ 397 (1085)
+++.|+.+++.+
T Consensus 210 i~~~~~~~~~~~ 221 (236)
T TIGR03864 210 VLADGAAAELRG 221 (236)
T ss_pred EEEeCCHHHHHH
Confidence 999998877643
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-35 Score=324.78 Aligned_cols=204 Identities=24% Similarity=0.289 Sum_probs=166.2
Q ss_pred CeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCC--C-CeeeeEEEEcCccCCh-----hcccceEEEEccCCC
Q 001400 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKT--G-GIIEGDIYISGYPKRQ-----ETFARISGYCEQNDI 912 (1085)
Q Consensus 841 ~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~--~-~~~~G~i~i~g~~~~~-----~~~~~~~gy~~Q~~~ 912 (1085)
+..+|+|+||+|++||+++|+|+||||||||+++|+|... + .+.+|+|.++|.++.. ..+++.++|++|++.
T Consensus 25 ~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~ 104 (260)
T PRK10744 25 KFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIALLRAKVGMVFQKPT 104 (260)
T ss_pred CeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccchHHHhcceEEEecCCc
Confidence 4569999999999999999999999999999999999753 1 1358999999987631 234677999999988
Q ss_pred CCCCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCc----ccccccCCCCCCCCCHHHHHHHHHHHHHhcCCC
Q 001400 913 HSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTS----LSGALIGLPGINGLSTEQRKRLTIAVELVANPS 988 (1085)
Q Consensus 913 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~ 988 (1085)
+++ .|++||+.+...... ........+.++++++.+++.+ ..+.. +.+||+|||||++|||||+.+|+
T Consensus 105 ~~~-~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-----~~~LS~Gq~qrv~laral~~~p~ 176 (260)
T PRK10744 105 PFP-MSIYDNIAFGVRLFE--KLSRAEMDERVEWALTKAALWNEVKDKLHQS-----GYSLSGGQQQRLCIARGIAIRPE 176 (260)
T ss_pred cCc-CcHHHHHhhhHhhcC--CCCHHHHHHHHHHHHHHcCCChhhHHHHhcC-----CCCCCHHHHHHHHHHHHHHCCCC
Confidence 777 799999987643221 1222333456788999988743 22222 35799999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCC
Q 001400 989 IVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1085)
Q Consensus 989 illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~ 1055 (1085)
||||||||+|||+.++..+.+.|+++. ++.|||++||+++ .+.+.+|++++|++ |+++..|+..
T Consensus 177 lllLDEPt~~LD~~~~~~l~~~L~~~~-~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~g~~~ 240 (260)
T PRK10744 177 VLLLDEPCSALDPISTGRIEELITELK-QDYTVVIVTHNMQ-QAARCSDYTAFMYL-GELIEFGNTD 240 (260)
T ss_pred EEEEcCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCHH
Confidence 999999999999999999999999985 4789999999986 46678999999985 7888888753
|
|
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-35 Score=322.07 Aligned_cols=200 Identities=27% Similarity=0.381 Sum_probs=167.3
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCCCceEEEEccCCCCCCCCCHH
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVR 227 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 227 (1085)
+.+|+|+|+.|++|++++|+|||||||||||++|+|.++|. +|+|.++|.++.. ..+.++|++|++.+++.+||+
T Consensus 14 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~--~~~~~~~v~q~~~~~~~~tv~ 88 (255)
T PRK11248 14 KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQ---HGSITLDGKPVEG--PGAERGVVFQNEGLLPWRNVQ 88 (255)
T ss_pred eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCC--CCCcEEEEeCCCccCCCCcHH
Confidence 35999999999999999999999999999999999998876 9999999988753 234689999999888889999
Q ss_pred HHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCcccccC
Q 001400 228 ETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGI 307 (1085)
Q Consensus 228 E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 307 (1085)
||+.+.....+... . .....++++++.+||++..++.+ ..|
T Consensus 89 e~l~~~~~~~~~~~----------~------------------------~~~~~~~~~l~~~gl~~~~~~~~-----~~L 129 (255)
T PRK11248 89 DNVAFGLQLAGVEK----------M------------------------QRLEIAHQMLKKVGLEGAEKRYI-----WQL 129 (255)
T ss_pred HHHHhHHHHcCCCH----------H------------------------HHHHHHHHHHHHcCChhHhhCCh-----hhC
Confidence 99987543221000 0 01124778899999987666544 469
Q ss_pred chhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEec--CCe
Q 001400 308 SGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLS--EGQ 385 (1085)
Q Consensus 308 SGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~--~G~ 385 (1085)
||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++++.. +++|+.++|+.+++..++|+|++|+ +|+
T Consensus 130 SgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~-g~tviivsH~~~~~~~~~d~i~~l~~~~G~ 208 (255)
T PRK11248 130 SGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQET-GKQVLLITHDIEEAVFMATELVLLSPGPGR 208 (255)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEeCCCcE
Confidence 9999999999999999999999999999999999999999999985433 4556668899999999999999998 599
Q ss_pred EEEecCh
Q 001400 386 IVYQGPR 392 (1085)
Q Consensus 386 iv~~G~~ 392 (1085)
++..++.
T Consensus 209 i~~~~~~ 215 (255)
T PRK11248 209 VVERLPL 215 (255)
T ss_pred EEEEecC
Confidence 9998864
|
|
| >COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-36 Score=298.94 Aligned_cols=226 Identities=23% Similarity=0.363 Sum_probs=193.7
Q ss_pred cccccccccCCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCCh---hcccceEEEE
Q 001400 831 ELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFARISGYC 907 (1085)
Q Consensus 831 ~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gy~ 907 (1085)
++++.++.++.+.+|+++|+.|++|.+++++|||||||||||.+++++.. ..+|+|+++|.++.. ...++.++..
T Consensus 3 ~i~nv~K~y~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~--~d~G~i~i~g~~~~~~~s~~LAk~lSIL 80 (252)
T COG4604 3 TIENVSKSYGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLK--KDSGEITIDGLELTSTPSKELAKKLSIL 80 (252)
T ss_pred eehhhhHhhCCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhcc--ccCceEEEeeeecccCChHHHHHHHHHH
Confidence 34556667789999999999999999999999999999999999998766 568999999998643 4567788888
Q ss_pred ccCCCCCCCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCC
Q 001400 908 EQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANP 987 (1085)
Q Consensus 908 ~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p 987 (1085)
-|+......+||+|-+.|+..-. .......+.+..++++++.++|.++.+... .+||||||||.-||+.|+++.
T Consensus 81 kQ~N~i~~rlTV~dLv~FGRfPY-SqGRlt~eD~~~I~~aieyl~L~~l~dryL-----d~LSGGQrQRAfIAMVlaQdT 154 (252)
T COG4604 81 KQENHINSRLTVRDLVGFGRFPY-SQGRLTKEDRRIINEAIEYLHLEDLSDRYL-----DELSGGQRQRAFIAMVLAQDT 154 (252)
T ss_pred HhhchhhheeEHHHHhhcCCCcc-cCCCCchHHHHHHHHHHHHhcccchHHHhH-----HhcccchhhhhhhheeeeccC
Confidence 89887778999999999984321 223345667788999999999999999875 579999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCCC--chHHHHHH
Q 001400 988 SIVFMDEPTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGS--KSCELIKY 1064 (1085)
Q Consensus 988 ~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~~--~~~~~~~~ 1064 (1085)
+.++||||.++||......+|+.+++++++ |+|||++.||.++ ..-.+|+|+-|++ |+++..|+..+ ..+.+-+-
T Consensus 155 dyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINf-AS~YsD~IVAlK~-G~vv~~G~~~eii~~~~L~ei 232 (252)
T COG4604 155 DYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINF-ASCYSDHIVALKN-GKVVKQGSPDEIIQPEILSEI 232 (252)
T ss_pred cEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccH-HHhhhhheeeecC-CEEEecCCHHHhcCHHHHHHH
Confidence 999999999999999999999999999876 9999999999885 5567799999985 79999999876 34556666
Q ss_pred HH
Q 001400 1065 FE 1066 (1085)
Q Consensus 1065 ~~ 1066 (1085)
|+
T Consensus 233 yd 234 (252)
T COG4604 233 YD 234 (252)
T ss_pred hc
Confidence 65
|
|
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-35 Score=324.99 Aligned_cols=209 Identities=23% Similarity=0.281 Sum_probs=166.6
Q ss_pred CCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCC---CeeeeEEEEcCccCCh-----hcccceEEEEccCC
Q 001400 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTG---GIIEGDIYISGYPKRQ-----ETFARISGYCEQND 911 (1085)
Q Consensus 840 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~---~~~~G~i~i~g~~~~~-----~~~~~~~gy~~Q~~ 911 (1085)
++..+|+|+||+|++||+++|+|+||||||||+++|+|...+ .+.+|+|.++|.++.. ..+++.+||++|++
T Consensus 30 ~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~ 109 (267)
T PRK14235 30 GEKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVVELRARVGMVFQKP 109 (267)
T ss_pred CCEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccchHHHhhceEEEecCC
Confidence 345799999999999999999999999999999999997542 1368999999987632 23466799999998
Q ss_pred CCCCCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEE
Q 001400 912 IHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVF 991 (1085)
Q Consensus 912 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~ill 991 (1085)
.+++. |+.||+.+....+.. ........+.++++++.+++.+....... ..+..||+|||||++|||||+.+|++||
T Consensus 110 ~~~~~-tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~~LSgGq~qrv~laral~~~p~lll 186 (267)
T PRK14235 110 NPFPK-SIYENVAYGPRIHGL-ARSKAELDEIVETSLRKAGLWEEVKDRLH-EPGTGLSGGQQQRLCIARAIAVSPEVIL 186 (267)
T ss_pred CCCCC-cHHHHHHHHHHhccc-ccchHHHHHHHHHHHHHcCCchhhhHHhh-CCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 88775 999999886533211 01122334557888999988542111111 1135799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCC
Q 001400 992 MDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1085)
Q Consensus 992 lDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~ 1054 (1085)
|||||+|||+.++..+.+.|+++.+ +.|||++||+++ .+...+|++++|++ |+++..|+.
T Consensus 187 LDEPt~~LD~~~~~~l~~~L~~l~~-~~tiiivtH~~~-~~~~~~d~v~~l~~-G~i~~~g~~ 246 (267)
T PRK14235 187 MDEPCSALDPIATAKVEELIDELRQ-NYTIVIVTHSMQ-QAARVSQRTAFFHL-GNLVEVGDT 246 (267)
T ss_pred EeCCCcCCCHHHHHHHHHHHHHHhc-CCeEEEEEcCHH-HHHhhCCEEEEEEC-CEEEEeCCH
Confidence 9999999999999999999999864 789999999986 46678999999985 788888864
|
|
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-35 Score=322.30 Aligned_cols=194 Identities=23% Similarity=0.285 Sum_probs=165.2
Q ss_pred eecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCCCceEEEEccCCCCCCCCCHHH
Q 001400 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRE 228 (1085)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E 228 (1085)
.+|+|+|+.|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.. .++.++|++|++.+++.+||+|
T Consensus 26 ~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~---~G~i~~~g~~~~~--~~~~i~~v~q~~~l~~~~tv~e 100 (257)
T PRK11247 26 TVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPS---AGELLAGTAPLAE--AREDTRLMFQDARLLPWKKVID 100 (257)
T ss_pred ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEHHH--hhCceEEEecCccCCCCCcHHH
Confidence 5999999999999999999999999999999999998876 9999999976532 2467999999998888899999
Q ss_pred HHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCcccccCc
Q 001400 229 TLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGIS 308 (1085)
Q Consensus 229 ~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LS 308 (1085)
|+.+... . . ....++.+++.+||.+..+..+ ..||
T Consensus 101 nl~~~~~----~-~-----------------------------------~~~~~~~~l~~~gl~~~~~~~~-----~~LS 135 (257)
T PRK11247 101 NVGLGLK----G-Q-----------------------------------WRDAALQALAAVGLADRANEWP-----AALS 135 (257)
T ss_pred HHHhccc----c-h-----------------------------------HHHHHHHHHHHcCChhHhcCCh-----hhCC
Confidence 9987421 0 0 0113567888999987666544 5699
Q ss_pred hhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEecCCeEEE
Q 001400 309 GGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVY 388 (1085)
Q Consensus 309 GGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~~G~iv~ 388 (1085)
|||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++.+..+ .+|+.++|+..++..++|+|++|++|++++
T Consensus 136 gGqkqrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~-~tviivsHd~~~~~~~~d~i~~l~~G~i~~ 214 (257)
T PRK11247 136 GGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHG-FTVLLVTHDVSEAVAMADRVLLIEEGKIGL 214 (257)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcC-CEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 9999999999999999999999999999999999999999998865433 456668888889999999999999999999
Q ss_pred ecChh
Q 001400 389 QGPRV 393 (1085)
Q Consensus 389 ~G~~~ 393 (1085)
.|+.+
T Consensus 215 ~~~~~ 219 (257)
T PRK11247 215 DLTVD 219 (257)
T ss_pred ecccc
Confidence 88753
|
|
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=317.42 Aligned_cols=197 Identities=28% Similarity=0.428 Sum_probs=166.3
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCC--CCceEEEEccCCCCCCCCC
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV--PPRTSAYVSQQDWQVAEMT 225 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~lT 225 (1085)
.++|+|+|+++++| +++|+|||||||||||++|+|.++|. +|+|.++|.++.... .++.++|++|++.+++.+|
T Consensus 13 ~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~t 88 (211)
T cd03264 13 KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPS---SGTIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNFT 88 (211)
T ss_pred EEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCC---ccEEEECCCccccchHHHHhheEEecCCCcccccCC
Confidence 36999999999999 99999999999999999999998876 999999998765432 2467999999999899999
Q ss_pred HHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCcccc
Q 001400 226 VRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLK 305 (1085)
Q Consensus 226 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 305 (1085)
|+||+.+.....+... . +....++.+++.+||++..++.+ .
T Consensus 89 v~~~l~~~~~~~~~~~--------------------~--------------~~~~~~~~~l~~~~l~~~~~~~~-----~ 129 (211)
T cd03264 89 VREFLDYIAWLKGIPS--------------------K--------------EVKARVDEVLELVNLGDRAKKKI-----G 129 (211)
T ss_pred HHHHHHHHHHHhCCCH--------------------H--------------HHHHHHHHHHHHCCCHHHHhCch-----h
Confidence 9999987543321100 0 00123678899999987777655 4
Q ss_pred cCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEecCCe
Q 001400 306 GISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQ 385 (1085)
Q Consensus 306 ~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~~G~ 385 (1085)
.|||||||||+||+||+.+|++++|||||+|||+.++.++.+.|+++++ + ++++.++|+.+++.+++|++++|++|+
T Consensus 130 ~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~-~tii~vsH~~~~~~~~~d~i~~l~~g~ 206 (211)
T cd03264 130 SLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGE--D-RIVILSTHIVEDVESLCNQVAVLNKGK 206 (211)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC--C-CEEEEEcCCHHHHHHhCCEEEEEECCE
Confidence 6999999999999999999999999999999999999999999999864 3 566678899999999999999999999
Q ss_pred EEEec
Q 001400 386 IVYQG 390 (1085)
Q Consensus 386 iv~~G 390 (1085)
+++.|
T Consensus 207 i~~~g 211 (211)
T cd03264 207 LVFEG 211 (211)
T ss_pred EEecC
Confidence 98765
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-35 Score=337.85 Aligned_cols=192 Identities=23% Similarity=0.365 Sum_probs=166.3
Q ss_pred eeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCCh-------hcccceEEEEccCCCCCCCCCH
Q 001400 847 NVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ-------ETFARISGYCEQNDIHSPGLTV 919 (1085)
Q Consensus 847 ~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~-------~~~~~~~gy~~Q~~~~~~~~tv 919 (1085)
|+||+|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.. ...++.+||++|++.+++.+||
T Consensus 16 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~--p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv 93 (352)
T PRK11144 16 TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTR--PQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKV 93 (352)
T ss_pred EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCcH
Confidence 8999999999999999999999999999999876 568999999987532 2245789999999999999999
Q ss_pred HHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCC
Q 001400 920 LESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGL 999 (1085)
Q Consensus 920 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEPtsgL 999 (1085)
+||+.|+.. ....+.++++++.+++.+..+... .+||||||||++|||||+.+|++|+|||||+||
T Consensus 94 ~enl~~~~~---------~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgGq~qRvalaraL~~~p~llLLDEPts~L 159 (352)
T PRK11144 94 RGNLRYGMA---------KSMVAQFDKIVALLGIEPLLDRYP-----GSLSGGEKQRVAIGRALLTAPELLLMDEPLASL 159 (352)
T ss_pred HHHHHhhhh---------hhhHHHHHHHHHHcCCchhhhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccC
Confidence 999987531 112345788999999987766543 579999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHC-CceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCCC
Q 001400 1000 DARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGS 1056 (1085)
Q Consensus 1000 D~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~~ 1056 (1085)
|+.++..+++.|+++.++ |.|||++|||++ ++...+|++++|++ |+++..|+..+
T Consensus 160 D~~~~~~l~~~L~~l~~~~g~tii~vTHd~~-~~~~~~d~i~~l~~-G~i~~~g~~~~ 215 (352)
T PRK11144 160 DLPRKRELLPYLERLAREINIPILYVSHSLD-EILRLADRVVVLEQ-GKVKAFGPLEE 215 (352)
T ss_pred CHHHHHHHHHHHHHHHHhcCCeEEEEecCHH-HHHHhCCEEEEEeC-CEEEEecCHHH
Confidence 999999999999999765 899999999986 57788999999985 78998887543
|
|
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-35 Score=329.15 Aligned_cols=201 Identities=23% Similarity=0.302 Sum_probs=168.3
Q ss_pred eEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeee---eEEEEcCccCCh---hcccceEEEEccCCC-CC
Q 001400 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIE---GDIYISGYPKRQ---ETFARISGYCEQNDI-HS 914 (1085)
Q Consensus 842 ~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~---G~i~i~g~~~~~---~~~~~~~gy~~Q~~~-~~ 914 (1085)
..+|+||||+|++||++||+|+||||||||+++|+|...+ .+ |+|.++|.++.. ...++.+||++|++. .+
T Consensus 20 ~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p--~~g~~G~i~i~g~~~~~~~~~~~~~~ig~v~q~~~~~~ 97 (282)
T PRK13640 20 KPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLP--DDNPNSKITVDGITLTAKTVWDIREKVGIVFQNPDNQF 97 (282)
T ss_pred ccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCC--CCCCCcEEEECCEECCcCCHHHHHhheEEEEECHHHhh
Confidence 4599999999999999999999999999999999998652 34 899999988643 234567999999974 56
Q ss_pred CCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Q 001400 915 PGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDE 994 (1085)
Q Consensus 915 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDE 994 (1085)
+..||+||+.|....+ .....+..+.++++++.+++.+..+... ..||+|||||++|||||+.+|++|||||
T Consensus 98 ~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LS~G~~qrv~laral~~~P~llllDE 169 (282)
T PRK13640 98 VGATVGDDVAFGLENR---AVPRPEMIKIVRDVLADVGMLDYIDSEP-----ANLSGGQKQRVAIAGILAVEPKIIILDE 169 (282)
T ss_pred ccCCHHHHHHhhHHhC---CCCHHHHHHHHHHHHHHCCChhHhcCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEEC
Confidence 7789999998764322 1223344456788999999987666543 5899999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHC-CceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCC
Q 001400 995 PTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1085)
Q Consensus 995 PtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~ 1055 (1085)
||+|||+.++..+++.|++++++ |.|||++||+++. + +.||++++|++ |++++.|+..
T Consensus 170 Pt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~-~-~~~d~i~~l~~-G~i~~~g~~~ 228 (282)
T PRK13640 170 STSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDE-A-NMADQVLVLDD-GKLLAQGSPV 228 (282)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-H-HhCCEEEEEEC-CEEEEeCCHH
Confidence 99999999999999999998764 8999999999863 4 57999999985 7899888764
|
|
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-35 Score=328.62 Aligned_cols=201 Identities=24% Similarity=0.302 Sum_probs=168.5
Q ss_pred eEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCCh----hcccceEEEEccCCCC-CCC
Q 001400 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ----ETFARISGYCEQNDIH-SPG 916 (1085)
Q Consensus 842 ~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~----~~~~~~~gy~~Q~~~~-~~~ 916 (1085)
+.+|+||||+|++||+++|+|+||||||||+++|+|... +.+|+|.++|.++.. ...++.+||++|++.. +..
T Consensus 23 ~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~i~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~ 100 (280)
T PRK13633 23 KLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLI--PSEGKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIVA 100 (280)
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEeccccccHHHHhhheEEEecChhhhhcc
Confidence 469999999999999999999999999999999999876 568999999987642 2346789999999742 335
Q ss_pred CCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Q 001400 917 LTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPT 996 (1085)
Q Consensus 917 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEPt 996 (1085)
.|+.|++.|..... .....+.++.++++++.+++.+..+... ..||+|||||++|||+|+.+|++|||||||
T Consensus 101 ~~v~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEPt 172 (280)
T PRK13633 101 TIVEEDVAFGPENL---GIPPEEIRERVDESLKKVGMYEYRRHAP-----HLLSGGQKQRVAIAGILAMRPECIIFDEPT 172 (280)
T ss_pred ccHHHHHHhhHhhc---CCCHHHHHHHHHHHHHHCCCHhHhhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 69999998865322 1223344566889999999987766543 579999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHH-CCceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCC
Q 001400 997 SGLDARAAAIVMRTVRNIVN-TGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1085)
Q Consensus 997 sgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~ 1055 (1085)
+|||+.++..+.+.|+++.+ .|.|||++||+++. +. .+|++++|++ |++++.|+..
T Consensus 173 ~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~-~~-~~d~v~~l~~-G~i~~~g~~~ 229 (280)
T PRK13633 173 AMLDPSGRREVVNTIKELNKKYGITIILITHYMEE-AV-EADRIIVMDS-GKVVMEGTPK 229 (280)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHH-Hh-cCCEEEEEEC-CEEEEecCHH
Confidence 99999999999999999976 49999999999873 44 4999999985 7888888754
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-35 Score=337.35 Aligned_cols=228 Identities=25% Similarity=0.379 Sum_probs=193.2
Q ss_pred ccccccccccCCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCCh----hcccceEE
Q 001400 830 VELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ----ETFARISG 905 (1085)
Q Consensus 830 ~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~----~~~~~~~g 905 (1085)
+++++.++.++..++|+||||++++||++||+|.||||||||+|+|+|..+ +.+|+|.++|.+... ......|+
T Consensus 9 l~~~~i~K~FggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~--p~~G~I~~~G~~~~~~sp~~A~~~GI~ 86 (500)
T COG1129 9 LELRGISKSFGGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYP--PDSGEILIDGKPVAFSSPRDALAAGIA 86 (500)
T ss_pred eeeecceEEcCCceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCccc--CCCceEEECCEEccCCCHHHHHhCCcE
Confidence 345666777888999999999999999999999999999999999999876 579999999987542 33556799
Q ss_pred EEccCCCCCCCCCHHHHHHHhhhhcCC-CcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHh
Q 001400 906 YCEQNDIHSPGLTVLESLLFSAWLRLP-SEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELV 984 (1085)
Q Consensus 906 y~~Q~~~~~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~ 984 (1085)
.|.|+..+.|++||.||+.++...+.+ .-++.+...+...++|+.+++....+..+ .+||.||||.|.|||||.
T Consensus 87 ~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v-----~~LsiaqrQ~VeIArAl~ 161 (500)
T COG1129 87 TVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLV-----GDLSIAQRQMVEIARALS 161 (500)
T ss_pred EEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhh-----hhCCHHHHHHHHHHHHHh
Confidence 999999999999999999887554331 23455666777889999998853344443 579999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEecCcEEEEecC-CCC-chHHHH
Q 001400 985 ANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGP-LGS-KSCELI 1062 (1085)
Q Consensus 985 ~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~-~~~-~~~~~~ 1062 (1085)
.+++|||||||||+|+....+.+.+.+++++++|.+||+|||+++ ++++.|||+.||.+ |+.+...+ .++ ...+++
T Consensus 162 ~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~-Ei~~i~DritVlRD-G~~v~~~~~~~~~~~~~lv 239 (500)
T COG1129 162 FDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLD-EVFEIADRITVLRD-GRVVGTRPTAAETSEDELV 239 (500)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHH-HHHHhcCEEEEEeC-CEEeeecccccCCCHHHHH
Confidence 999999999999999999999999999999999999999999997 79999999999986 68888888 354 344566
Q ss_pred HHHH
Q 001400 1063 KYFE 1066 (1085)
Q Consensus 1063 ~~~~ 1066 (1085)
+..-
T Consensus 240 ~~Mv 243 (500)
T COG1129 240 RLMV 243 (500)
T ss_pred HHhh
Confidence 5543
|
|
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-35 Score=327.03 Aligned_cols=202 Identities=24% Similarity=0.338 Sum_probs=168.8
Q ss_pred CeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCCh---hcccceEEEEccCCC-CCCC
Q 001400 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFARISGYCEQNDI-HSPG 916 (1085)
Q Consensus 841 ~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gy~~Q~~~-~~~~ 916 (1085)
++.+|+|+||+|++||+++|+|+||||||||+++|+|... +.+|+|.++|.++.. ..+++.+||++|++. .++.
T Consensus 21 ~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~ 98 (271)
T PRK13632 21 ENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLK--PQSGEIKIDGITISKENLKEIRKKIGIIFQNPDNQFIG 98 (271)
T ss_pred CccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEecCcCCHHHHhcceEEEEeCHHHhcCc
Confidence 3568999999999999999999999999999999999876 468999999987643 235677999999974 5677
Q ss_pred CCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Q 001400 917 LTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPT 996 (1085)
Q Consensus 917 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEPt 996 (1085)
.|++||+.+..... ..........++++++.+++.+..+... ..||+|||||++|||||+.+|++|+|||||
T Consensus 99 ~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~laral~~~p~lllLDEP~ 170 (271)
T PRK13632 99 ATVEDDIAFGLENK---KVPPKKMKDIIDDLAKKVGMEDYLDKEP-----QNLSGGQKQRVAIASVLALNPEIIIFDEST 170 (271)
T ss_pred ccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCHHHhhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 89999998764321 1122333456788999999977666543 579999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHC-CceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCC
Q 001400 997 SGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1085)
Q Consensus 997 sgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~ 1055 (1085)
+|||+.++..+++.|+++.++ ++|||++||+++. + ..+|++++|++ |+++..|+..
T Consensus 171 ~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~-~-~~~d~v~~l~~-G~i~~~g~~~ 227 (271)
T PRK13632 171 SMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDE-A-ILADKVIVFSE-GKLIAQGKPK 227 (271)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhH-H-hhCCEEEEEEC-CEEEEecCHH
Confidence 999999999999999998766 5999999999863 4 47999999985 6888888754
|
|
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-35 Score=318.56 Aligned_cols=200 Identities=27% Similarity=0.376 Sum_probs=169.0
Q ss_pred EeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCChh-cccceEEEEccCCCCCCCCCHHHH
Q 001400 844 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE-TFARISGYCEQNDIHSPGLTVLES 922 (1085)
Q Consensus 844 ~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~-~~~~~~gy~~Q~~~~~~~~tv~e~ 922 (1085)
+|+|+||+|++||+++|+|+||||||||+++|+|... +.+|+|+++|.++... ..++.++|++|++.+++.+|+.||
T Consensus 14 ~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~--p~~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~ 91 (235)
T cd03299 14 KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIK--PDSGKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYKN 91 (235)
T ss_pred eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCEEcCcCChhHcCEEEEeecCccCCCccHHHH
Confidence 7999999999999999999999999999999999866 5689999999876431 234679999999988889999999
Q ss_pred HHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHH
Q 001400 923 LLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDAR 1002 (1085)
Q Consensus 923 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEPtsgLD~~ 1002 (1085)
+.+..... ........+.+.++++.+++.+..+..+ ..||+|||||++|||||+.+|++++|||||+|||+.
T Consensus 92 l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~ 163 (235)
T cd03299 92 IAYGLKKR---KVDKKEIERKVLEIAEMLGIDHLLNRKP-----ETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVR 163 (235)
T ss_pred HHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHHhcCc-----ccCCHHHHHHHHHHHHHHcCCCEEEECCCcccCCHH
Confidence 98764322 1122333455678899999877666543 479999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHC-CceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCC
Q 001400 1003 AAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1085)
Q Consensus 1003 ~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~ 1055 (1085)
+++.+.+.|+++..+ |+|||++||++. ++.+.+|++++|++ |++++.|+..
T Consensus 164 ~~~~l~~~l~~~~~~~~~tili~tH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~ 215 (235)
T cd03299 164 TKEKLREELKKIRKEFGVTVLHVTHDFE-EAWALADKVAIMLN-GKLIQVGKPE 215 (235)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEecCHH
Confidence 999999999998764 999999999986 46778999999985 7888888743
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-35 Score=319.31 Aligned_cols=202 Identities=25% Similarity=0.315 Sum_probs=166.8
Q ss_pred cceeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCC--CCCceEEEEc-cCCCCCC
Q 001400 146 SKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEF--VPPRTSAYVS-QQDWQVA 222 (1085)
Q Consensus 146 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~--~~~~~~~yv~-Q~d~~~~ 222 (1085)
..+++|+|+|+.|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.+.... ..++.++|++ |++.+++
T Consensus 32 ~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~ 108 (236)
T cd03267 32 REVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPT---SGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWW 108 (236)
T ss_pred CCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCEEccccchhhcccEEEEcCCccccCC
Confidence 3457999999999999999999999999999999999998876 99999999865332 2245799997 5566778
Q ss_pred CCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCc
Q 001400 223 EMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDE 302 (1085)
Q Consensus 223 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 302 (1085)
.+||+|++.+.....+... .+....++.+++.+||++..|+.++
T Consensus 109 ~~tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gl~~~~~~~~~-- 152 (236)
T cd03267 109 DLPVIDSFYLLAAIYDLPP----------------------------------ARFKKRLDELSELLDLEELLDTPVR-- 152 (236)
T ss_pred CCcHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCChhHhcCChh--
Confidence 8999999988643321100 0011236778889999988887654
Q ss_pred ccccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEec
Q 001400 303 MLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLS 382 (1085)
Q Consensus 303 ~~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~ 382 (1085)
.||||||||++||+||+.+|++++|||||+|||+.++..+.+.|+++++.. +++|+.++|+.+++.+++|++++|+
T Consensus 153 ---~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~-~~tiiivsH~~~~~~~~~d~i~~l~ 228 (236)
T cd03267 153 ---QLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRER-GTTVLLTSHYMKDIEALARRVLVID 228 (236)
T ss_pred ---hCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcC-CCEEEEEecCHHHHHHhCCEEEEEe
Confidence 599999999999999999999999999999999999999999999987643 4456667888889999999999999
Q ss_pred CCeEEEec
Q 001400 383 EGQIVYQG 390 (1085)
Q Consensus 383 ~G~iv~~G 390 (1085)
+|++++.|
T Consensus 229 ~G~i~~~g 236 (236)
T cd03267 229 KGRLLYDG 236 (236)
T ss_pred CCEEEecC
Confidence 99998765
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-35 Score=326.83 Aligned_cols=203 Identities=25% Similarity=0.355 Sum_probs=168.9
Q ss_pred eecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCC----CCceEEEEccCCC-CCCC
Q 001400 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV----PPRTSAYVSQQDW-QVAE 223 (1085)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~----~~~~~~yv~Q~d~-~~~~ 223 (1085)
.+|+|+|++|++|++++|+|||||||||||++|+|.++|. +|+|.++|.++.... .++.++|++|++. .+..
T Consensus 16 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 92 (274)
T PRK13644 16 PALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQ---KGKVLVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVG 92 (274)
T ss_pred ceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEECCccccHHHHHhheEEEEEChhhhccc
Confidence 5999999999999999999999999999999999998876 999999999875432 2357999999975 4667
Q ss_pred CCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCcc
Q 001400 224 MTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEM 303 (1085)
Q Consensus 224 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 303 (1085)
+||.||+.|.....+.. . .+....++++++.+||++..++.+
T Consensus 93 ~tv~enl~~~~~~~~~~-~---------------------------------~~~~~~~~~~l~~~gl~~~~~~~~---- 134 (274)
T PRK13644 93 RTVEEDLAFGPENLCLP-P---------------------------------IEIRKRVDRALAEIGLEKYRHRSP---- 134 (274)
T ss_pred chHHHHHHhhHHHcCCC-H---------------------------------HHHHHHHHHHHHHCCCHHHhcCCc----
Confidence 89999998864322110 0 001123778899999988777655
Q ss_pred cccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEecC
Q 001400 304 LKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSE 383 (1085)
Q Consensus 304 ~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~~ 383 (1085)
..|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++... +++|+.++|+..++ ..+|+|++|++
T Consensus 135 -~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~--g~til~~tH~~~~~-~~~d~v~~l~~ 210 (274)
T PRK13644 135 -KTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEK--GKTIVYITHNLEEL-HDADRIIVMDR 210 (274)
T ss_pred -ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhC--CCEEEEEecCHHHH-hhCCEEEEEEC
Confidence 469999999999999999999999999999999999999999999998652 45566677888887 56999999999
Q ss_pred CeEEEecChhhHH
Q 001400 384 GQIVYQGPRVSVL 396 (1085)
Q Consensus 384 G~iv~~G~~~~~~ 396 (1085)
|++++.|+.+++.
T Consensus 211 G~i~~~g~~~~~~ 223 (274)
T PRK13644 211 GKIVLEGEPENVL 223 (274)
T ss_pred CEEEEECCHHHHh
Confidence 9999999987764
|
|
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-35 Score=338.14 Aligned_cols=195 Identities=25% Similarity=0.405 Sum_probs=169.4
Q ss_pred cceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCC-------CCCceEEEEccCCCCCCCCC
Q 001400 153 DLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEF-------VPPRTSAYVSQQDWQVAEMT 225 (1085)
Q Consensus 153 ~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~-------~~~~~~~yv~Q~d~~~~~lT 225 (1085)
|+|+.|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++... ..++.++||+|++.+++++|
T Consensus 16 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~---~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~t 92 (352)
T PRK11144 16 TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQ---KGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYK 92 (352)
T ss_pred EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCc
Confidence 899999999999999999999999999999998876 99999999876431 12467999999999999999
Q ss_pred HHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCcccc
Q 001400 226 VRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLK 305 (1085)
Q Consensus 226 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 305 (1085)
|+||+.|+.+.. ...+++++++.+||++..+..+ .
T Consensus 93 v~enl~~~~~~~----------------------------------------~~~~~~~~l~~~gl~~~~~~~~-----~ 127 (352)
T PRK11144 93 VRGNLRYGMAKS----------------------------------------MVAQFDKIVALLGIEPLLDRYP-----G 127 (352)
T ss_pred HHHHHHhhhhhh----------------------------------------hHHHHHHHHHHcCCchhhhCCc-----c
Confidence 999998753100 0123678899999987777654 4
Q ss_pred cCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEecCCe
Q 001400 306 GISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQ 385 (1085)
Q Consensus 306 ~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~~G~ 385 (1085)
.|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.+.. +++++.++|+.+++..++|++++|++|+
T Consensus 128 ~LSgGq~qRvalaraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~-g~tii~vTHd~~~~~~~~d~i~~l~~G~ 206 (352)
T PRK11144 128 SLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREI-NIPILYVSHSLDEILRLADRVVVLEQGK 206 (352)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhc-CCeEEEEecCHHHHHHhCCEEEEEeCCE
Confidence 699999999999999999999999999999999999999999999987643 4556668899999999999999999999
Q ss_pred EEEecChhhHH
Q 001400 386 IVYQGPRVSVL 396 (1085)
Q Consensus 386 iv~~G~~~~~~ 396 (1085)
++..|+++++.
T Consensus 207 i~~~g~~~~i~ 217 (352)
T PRK11144 207 VKAFGPLEEVW 217 (352)
T ss_pred EEEecCHHHHH
Confidence 99999998874
|
|
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-35 Score=325.82 Aligned_cols=205 Identities=26% Similarity=0.358 Sum_probs=168.6
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCC---CCceEEEEccCCC-CCCC
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV---PPRTSAYVSQQDW-QVAE 223 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~---~~~~~~yv~Q~d~-~~~~ 223 (1085)
+++|+|+|++|++|++++|+|||||||||||++|+|.++|. +|+|.++|.++.... .++.++|++|++. .++.
T Consensus 22 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~ 98 (271)
T PRK13632 22 NNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQ---SGEIKIDGITISKENLKEIRKKIGIIFQNPDNQFIG 98 (271)
T ss_pred ccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEecCcCCHHHHhcceEEEEeCHHHhcCc
Confidence 35899999999999999999999999999999999998876 999999999875432 2467999999974 5778
Q ss_pred CCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCcc
Q 001400 224 MTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEM 303 (1085)
Q Consensus 224 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 303 (1085)
+||+||+.+.....+... .+....++++++.+||++..++.+
T Consensus 99 ~tv~enl~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~---- 140 (271)
T PRK13632 99 ATVEDDIAFGLENKKVPP----------------------------------KKMKDIIDDLAKKVGMEDYLDKEP---- 140 (271)
T ss_pred ccHHHHHHhHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCHHHhhCCc----
Confidence 999999987543211000 001224778899999987777655
Q ss_pred cccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEecC
Q 001400 304 LKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSE 383 (1085)
Q Consensus 304 ~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~~ 383 (1085)
+.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++. ++++|+.++|+.+++. .+|++++|++
T Consensus 141 -~~LS~G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~-~~~tiii~sH~~~~~~-~~d~v~~l~~ 217 (271)
T PRK13632 141 -QNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKT-RKKTLISITHDMDEAI-LADKVIVFSE 217 (271)
T ss_pred -ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh-cCcEEEEEEechhHHh-hCCEEEEEEC
Confidence 469999999999999999999999999999999999999999999998753 3345555667777774 7999999999
Q ss_pred CeEEEecChhhHH
Q 001400 384 GQIVYQGPRVSVL 396 (1085)
Q Consensus 384 G~iv~~G~~~~~~ 396 (1085)
|++++.|+.+++.
T Consensus 218 G~i~~~g~~~~~~ 230 (271)
T PRK13632 218 GKLIAQGKPKEIL 230 (271)
T ss_pred CEEEEecCHHHHh
Confidence 9999999887654
|
|
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-35 Score=325.74 Aligned_cols=202 Identities=25% Similarity=0.336 Sum_probs=168.9
Q ss_pred eEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCCh---hcccceEEEEccCCC-CCCCC
Q 001400 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFARISGYCEQNDI-HSPGL 917 (1085)
Q Consensus 842 ~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gy~~Q~~~-~~~~~ 917 (1085)
..+|+|+||+|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+... ..+++.++|++|++. .++..
T Consensus 22 ~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~ 99 (269)
T PRK13648 22 SFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEK--VKSGEIFYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGS 99 (269)
T ss_pred CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEECCcCCHHHHHhheeEEEeChHHhcccc
Confidence 358999999999999999999999999999999999876 468999999987642 345677999999975 67788
Q ss_pred CHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCC
Q 001400 918 TVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTS 997 (1085)
Q Consensus 918 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEPts 997 (1085)
|+.+|+.|..... ........+.++++++.+++.+..+.. +..||+|||||++|||||+.+|++|||||||+
T Consensus 100 ~v~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrl~laral~~~p~lllLDEPt~ 171 (269)
T PRK13648 100 IVKYDVAFGLENH---AVPYDEMHRRVSEALKQVDMLERADYE-----PNALSGGQKQRVAIAGVLALNPSVIILDEATS 171 (269)
T ss_pred cHHHHHHhhHHhc---CCCHHHHHHHHHHHHHHcCCchhhhCC-----cccCCHHHHHHHHHHHHHHcCCCEEEEeCCcc
Confidence 9999998764322 112233345678899999987766554 35799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHC-CceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCCC
Q 001400 998 GLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGS 1056 (1085)
Q Consensus 998 gLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~~ 1056 (1085)
|||+.++..+++.|+++.++ |.|||++||+++. +. .+|++++|++ |++++.|+..+
T Consensus 172 ~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~-~~-~~d~i~~l~~-G~i~~~g~~~~ 228 (269)
T PRK13648 172 MLDPDARQNLLDLVRKVKSEHNITIISITHDLSE-AM-EADHVIVMNK-GTVYKEGTPTE 228 (269)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchH-Hh-cCCEEEEEEC-CEEEEecCHHH
Confidence 99999999999999998764 8999999999873 54 4999999985 78998887653
|
|
| >COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-36 Score=290.54 Aligned_cols=214 Identities=22% Similarity=0.320 Sum_probs=180.9
Q ss_pred cccccccccCCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCC-------------h
Q 001400 831 ELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKR-------------Q 897 (1085)
Q Consensus 831 ~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~-------------~ 897 (1085)
+++++.+.++...+|++||++.+.|+.+.|+|.|||||||+|+||.=+.+ +..|.|.++|..++ .
T Consensus 8 ~v~dlHK~~G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~--P~~G~I~v~geei~~k~~~~G~l~~ad~ 85 (256)
T COG4598 8 EVEDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEK--PSAGSIRVNGEEIRLKRDKDGQLKPADK 85 (256)
T ss_pred ehhHHHhhcccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcC--CCCceEEECCeEEEeeeCCCCCeeeCCH
Confidence 44566677888999999999999999999999999999999999997666 56899999996531 0
Q ss_pred ---hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHH
Q 001400 898 ---ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQR 974 (1085)
Q Consensus 898 ---~~~~~~~gy~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqr 974 (1085)
...+.+.|+|+|+.+++..+||.||+.-..-.- ...++.+..+..+..+..+|+.+.++.+. ..|||||+
T Consensus 86 ~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhV--Lg~~k~ea~e~Ae~~L~kVGi~ek~~~YP-----~~LSGGQQ 158 (256)
T COG4598 86 RQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHV--LGVSKAEAIERAEKYLAKVGIAEKADAYP-----AHLSGGQQ 158 (256)
T ss_pred HHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHh--hcCCHHHHHHHHHHHHHHhCchhhhhcCc-----cccCchHH
Confidence 124456899999999999999999997543211 13345566677788899999988877653 47999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCC
Q 001400 975 KRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1085)
Q Consensus 975 qrl~iA~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~ 1054 (1085)
||++|||||+.+|+++++|||||+|||+-.-.+.+.+++++++|+|.+++||.+.+ ..+...++++|.+ |++...|+.
T Consensus 159 QR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~F-AR~Vss~v~fLh~-G~iEE~G~P 236 (256)
T COG4598 159 QRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGF-ARDVSSHVIFLHQ-GKIEEEGPP 236 (256)
T ss_pred HHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhH-HHhhhhheEEeec-ceecccCCh
Confidence 99999999999999999999999999999999999999999999999999999864 5667789999985 799999987
Q ss_pred C
Q 001400 1055 G 1055 (1085)
Q Consensus 1055 ~ 1055 (1085)
.
T Consensus 237 ~ 237 (256)
T COG4598 237 E 237 (256)
T ss_pred H
Confidence 5
|
|
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-35 Score=322.48 Aligned_cols=209 Identities=22% Similarity=0.292 Sum_probs=166.2
Q ss_pred CCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCC--CC-eeeeEEEEcCccCCh-----hcccceEEEEccCC
Q 001400 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKT--GG-IIEGDIYISGYPKRQ-----ETFARISGYCEQND 911 (1085)
Q Consensus 840 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~--~~-~~~G~i~i~g~~~~~-----~~~~~~~gy~~Q~~ 911 (1085)
++..+|+|+||+|++||+++|+|+||||||||+++|+|... +. +.+|+|.++|.++.. ...++.+||++|++
T Consensus 23 ~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~ 102 (259)
T PRK14274 23 GQHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVELRKNIGMVFQKG 102 (259)
T ss_pred CCeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHHHHhhceEEEecCC
Confidence 34579999999999999999999999999999999999754 11 147999999987632 23456799999998
Q ss_pred CCCCCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEE
Q 001400 912 IHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVF 991 (1085)
Q Consensus 912 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~ill 991 (1085)
.+++. |++||+.+....+.. ....+..+.++++++.+++.+....... ..+.+||+|||||++|||+|+.+|+|||
T Consensus 103 ~~~~~-tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~l~-~~~~~LS~Gq~qrv~laral~~~p~lll 178 (259)
T PRK14274 103 NPFPQ-SIFDNVAYGPRIHGT--KNKKKLQEIVEKSLKDVALWDEVKDRLH-TQALSLSGGQQQRLCIARALATNPDVLL 178 (259)
T ss_pred ccccc-CHHHHHHhHHHhcCC--CCHHHHHHHHHHHHHHcCCchhhhhhhh-CCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 88875 999999876432211 1122334456788888887532111111 1235799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCC
Q 001400 992 MDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1085)
Q Consensus 992 lDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~ 1055 (1085)
|||||+|||+.++..+++.|+++.+ ++|||++||+++ .+.+.+|++++|++ |+++..|+..
T Consensus 179 lDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivtH~~~-~~~~~~d~i~~l~~-G~i~~~g~~~ 239 (259)
T PRK14274 179 MDEPTSALDPVSTRKIEELILKLKE-KYTIVIVTHNMQ-QAARVSDQTAFFYM-GELVECNDTN 239 (259)
T ss_pred EcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHH-HHHHhCCEEEEEEC-CEEEEECCHH
Confidence 9999999999999999999999864 799999999986 47788999999974 7899888754
|
|
| >cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-35 Score=309.37 Aligned_cols=171 Identities=54% Similarity=0.908 Sum_probs=151.1
Q ss_pred eEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCC--CCCeeeeEEEEcCccCChhcccceEEEEccCCCCCCCCCH
Q 001400 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRK--TGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTV 919 (1085)
Q Consensus 842 ~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~--~~~~~~G~i~i~g~~~~~~~~~~~~gy~~Q~~~~~~~~tv 919 (1085)
..+|+|+||++++||+++|+|+||||||||+++|+|.. . +.+|+|.++|.+......++.++|++|++.+++.+|+
T Consensus 22 ~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~--~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~t~ 99 (194)
T cd03213 22 KQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGL--GVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTV 99 (194)
T ss_pred ccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC--CCceEEEECCEeCchHhhhheEEEccCcccCCCCCcH
Confidence 56999999999999999999999999999999999986 5 5689999999987654556789999999988889999
Q ss_pred HHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCC
Q 001400 920 LESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGL 999 (1085)
Q Consensus 920 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEPtsgL 999 (1085)
+||+.+.... . .||+|||||++|||||+.+|++|+|||||+||
T Consensus 100 ~~~i~~~~~~---------------~----------------------~LS~G~~qrv~laral~~~p~illlDEP~~~L 142 (194)
T cd03213 100 RETLMFAAKL---------------R----------------------GLSGGERKRVSIALELVSNPSLLFLDEPTSGL 142 (194)
T ss_pred HHHHHHHHHh---------------c----------------------cCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCC
Confidence 9999754210 0 49999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEecCcEEEEec
Q 001400 1000 DARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAG 1052 (1085)
Q Consensus 1000 D~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g 1052 (1085)
|+.+++.+.+.|+++.++|+|||++||+++.++.+.+|++++|++ |++++.|
T Consensus 143 D~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~-G~i~~~~ 194 (194)
T cd03213 143 DSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQ-GRVIYFG 194 (194)
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeC-CEEEecC
Confidence 999999999999998777999999999986457778999999985 6777653
|
DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. |
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=321.04 Aligned_cols=209 Identities=22% Similarity=0.253 Sum_probs=167.7
Q ss_pred CCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCC---CeeeeEEEEcCccCCh-----hcccceEEEEccCC
Q 001400 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTG---GIIEGDIYISGYPKRQ-----ETFARISGYCEQND 911 (1085)
Q Consensus 840 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~---~~~~G~i~i~g~~~~~-----~~~~~~~gy~~Q~~ 911 (1085)
+++.+|+||||++++||++||+|+||||||||+++|+|...+ .+.+|+|.++|.++.. ...++.++|++|++
T Consensus 31 ~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~ 110 (267)
T PRK14237 31 GKKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVYEMRKHIGMVFQRP 110 (267)
T ss_pred CCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCChHHHhcceEEEecCC
Confidence 345799999999999999999999999999999999997642 1468999999987632 23466799999998
Q ss_pred CCCCCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEE
Q 001400 912 IHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVF 991 (1085)
Q Consensus 912 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~ill 991 (1085)
.+++ .|++||+.+...... ........+.++++++.+++.+..+..... .+..||+|||||++|||||+.+|++|+
T Consensus 111 ~~~~-~tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~-~~~~LS~G~~qrl~laral~~~p~lll 186 (267)
T PRK14237 111 NPFA-KSIYENITFALERAG--VKDKKVLDEIVETSLKQAALWDQVKDDLHK-SALTLSGGQQQRLCIARAIAVKPDILL 186 (267)
T ss_pred cccc-ccHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCCchhhhhhcC-CcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 8877 599999987643211 112223345677888888885321111111 245899999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCC
Q 001400 992 MDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1085)
Q Consensus 992 lDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~ 1055 (1085)
|||||+|||+.++..+.+.|+++. ++.|||++||+++ ++.+.||++++|++ |++++.|+..
T Consensus 187 LDEPt~~LD~~~~~~l~~~l~~~~-~~~tiii~tH~~~-~~~~~~d~i~~l~~-G~i~~~g~~~ 247 (267)
T PRK14237 187 MDEPASALDPISTMQLEETMFELK-KNYTIIIVTHNMQ-QAARASDYTAFFYL-GDLIEYDKTR 247 (267)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHh-cCCEEEEEecCHH-HHHHhcCEEEEEEC-CEEEEeCCHH
Confidence 999999999999999999999985 5799999999987 47788999999984 7899988764
|
|
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=318.83 Aligned_cols=210 Identities=24% Similarity=0.311 Sum_probs=166.2
Q ss_pred eecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhC--CCCceeeEEEECCccCCCC-----CCCceEEEEccCCCCC
Q 001400 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLG--HHLQVSGKITYNGHGFKEF-----VPPRTSAYVSQQDWQV 221 (1085)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~--~~~~~~G~i~~~G~~~~~~-----~~~~~~~yv~Q~d~~~ 221 (1085)
.+|+|+|+.|++|++++|+|||||||||||++|+|.++ +..+.+|+|.++|+++... ..++.++|++|++.++
T Consensus 20 ~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~ 99 (253)
T PRK14242 20 QALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVVELRRRVGMVFQKPNPF 99 (253)
T ss_pred eeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHHHHhhcEEEEecCCCCC
Confidence 59999999999999999999999999999999999864 1112489999999887532 1245799999998877
Q ss_pred CCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccC
Q 001400 222 AEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGD 301 (1085)
Q Consensus 222 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 301 (1085)
+ .||+||+.|+....+.... + .....++.+++.+||.+...+.. +
T Consensus 100 ~-~tv~enl~~~~~~~~~~~~-~--------------------------------~~~~~~~~~l~~~~l~~~~~~~~-~ 144 (253)
T PRK14242 100 P-KSIFENVAYGLRVNGVKDK-A--------------------------------YLAERVERSLRHAALWDEVKDRL-H 144 (253)
T ss_pred c-CcHHHHHHHHHHHcCCCCH-H--------------------------------HHHHHHHHHHHHcCCchhhhHHh-h
Confidence 7 5999999886432211000 0 00123666788888854221222 2
Q ss_pred cccccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEe
Q 001400 302 EMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILL 381 (1085)
Q Consensus 302 ~~~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L 381 (1085)
..++.|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++.+ + .+|+.++|+..++.+++|+|++|
T Consensus 145 ~~~~~LSgGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~-~tvii~tH~~~~~~~~~d~v~~l 221 (253)
T PRK14242 145 ESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKA--R-YTIIIVTHNMQQAARVSDVTAFF 221 (253)
T ss_pred CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc--C-CeEEEEEecHHHHHHhCCEEEEE
Confidence 34567999999999999999999999999999999999999999999999843 3 45666888899999999999999
Q ss_pred cCCeEEEecChhhHH
Q 001400 382 SEGQIVYQGPRVSVL 396 (1085)
Q Consensus 382 ~~G~iv~~G~~~~~~ 396 (1085)
++|++++.|+.+++.
T Consensus 222 ~~G~i~~~g~~~~~~ 236 (253)
T PRK14242 222 YMGKLIEVGPTEQIF 236 (253)
T ss_pred ECCEEEEeCCHHHHH
Confidence 999999999987663
|
|
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-35 Score=322.21 Aligned_cols=205 Identities=22% Similarity=0.272 Sum_probs=169.8
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCC----------------CCCceE
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEF----------------VPPRTS 211 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~----------------~~~~~~ 211 (1085)
+++|+|+|+.|++|++++|+||||||||||+++|+|.+++. +|+|.++|.++... ..++.+
T Consensus 18 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i 94 (257)
T PRK10619 18 HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPS---EGSIVVNGQTINLVRDKDGQLKVADKNQLRLLRTRL 94 (257)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEEcccccccccccccccchHHHHHhhce
Confidence 36999999999999999999999999999999999998775 89999999876421 113579
Q ss_pred EEEccCCCCCCCCCHHHHHHHhhh-hcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhC
Q 001400 212 AYVSQQDWQVAEMTVRETLDFAGQ-CQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILG 290 (1085)
Q Consensus 212 ~yv~Q~d~~~~~lTV~E~l~f~~~-~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lg 290 (1085)
+|++|++.+++.+||+||+.++.. ..+.. . .....++.++++.+|
T Consensus 95 ~~v~q~~~l~~~~sv~enl~~~~~~~~~~~-------~---------------------------~~~~~~~~~~l~~~g 140 (257)
T PRK10619 95 TMVFQHFNLWSHMTVLENVMEAPIQVLGLS-------K---------------------------QEARERAVKYLAKVG 140 (257)
T ss_pred EEEecCcccCCCCcHHHHHHHHHHHhCCCC-------H---------------------------HHHHHHHHHHHHHcC
Confidence 999999998999999999987532 11100 0 001224677899999
Q ss_pred Ccccc-cccccCcccccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChh
Q 001400 291 LDTCA-DTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAP 369 (1085)
Q Consensus 291 L~~~~-dt~vg~~~~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~ 369 (1085)
|.+.. +. ....|||||||||+|||||+.+|++++|||||+|||+.++..+.+.|+++++. +.+|+.++|+..
T Consensus 141 l~~~~~~~-----~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~--g~tiiivsH~~~ 213 (257)
T PRK10619 141 IDERAQGK-----YPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEE--GKTMVVVTHEMG 213 (257)
T ss_pred CChhhhhC-----CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhc--CCEEEEEeCCHH
Confidence 97653 43 34579999999999999999999999999999999999999999999998653 455666888899
Q ss_pred HHHhhcCeEEEecCCeEEEecChhhHH
Q 001400 370 EAYELFDDVILLSEGQIVYQGPRVSVL 396 (1085)
Q Consensus 370 ~~~~~~D~ii~L~~G~iv~~G~~~~~~ 396 (1085)
++..+||+|++|++|++++.|+++++.
T Consensus 214 ~~~~~~d~i~~l~~G~i~~~~~~~~~~ 240 (257)
T PRK10619 214 FARHVSSHVIFLHQGKIEEEGAPEQLF 240 (257)
T ss_pred HHHHhcCEEEEEECCEEEEeCCHHHhh
Confidence 999999999999999999999987763
|
|
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-35 Score=316.01 Aligned_cols=194 Identities=27% Similarity=0.397 Sum_probs=162.5
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCC------CCceEEEEccCCCCC
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV------PPRTSAYVSQQDWQV 221 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~------~~~~~~yv~Q~d~~~ 221 (1085)
..+|+|+|+.|++|++++|+||||||||||+++|+|.++|. +|+|.++|.++.... .++.++|++|++.++
T Consensus 15 ~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 91 (214)
T TIGR02673 15 VAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPS---RGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLL 91 (214)
T ss_pred ceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcccCCHHHHHHHHhheEEEecChhhc
Confidence 35999999999999999999999999999999999998776 999999999876432 235799999999888
Q ss_pred CCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccC
Q 001400 222 AEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGD 301 (1085)
Q Consensus 222 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 301 (1085)
+.+||+||+.++....+... ...+..++++++.+||++..++.+
T Consensus 92 ~~~tv~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-- 135 (214)
T TIGR02673 92 PDRTVYENVALPLEVRGKKE----------------------------------REIQRRVGAALRQVGLEHKADAFP-- 135 (214)
T ss_pred cCCcHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCChhhhhCCh--
Confidence 89999999988643221000 001123678899999987666554
Q ss_pred cccccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEe
Q 001400 302 EMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILL 381 (1085)
Q Consensus 302 ~~~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L 381 (1085)
..|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++.+. +++|+.++|+.+++.+++|++++|
T Consensus 136 ---~~LS~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~--~~tii~~tH~~~~~~~~~d~i~~l 210 (214)
T TIGR02673 136 ---EQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKR--GTTVIVATHDLSLVDRVAHRVIIL 210 (214)
T ss_pred ---hhCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHhcCEEEEe
Confidence 469999999999999999999999999999999999999999999998653 445666788889999999999999
Q ss_pred cCCe
Q 001400 382 SEGQ 385 (1085)
Q Consensus 382 ~~G~ 385 (1085)
++|+
T Consensus 211 ~~G~ 214 (214)
T TIGR02673 211 DDGR 214 (214)
T ss_pred cCCC
Confidence 9985
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-35 Score=315.40 Aligned_cols=211 Identities=23% Similarity=0.368 Sum_probs=172.9
Q ss_pred CeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCC---CCeeeeEEEEcCccCC---hh----cccceEEEEccC
Q 001400 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKT---GGIIEGDIYISGYPKR---QE----TFARISGYCEQN 910 (1085)
Q Consensus 841 ~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~---~~~~~G~i~i~g~~~~---~~----~~~~~~gy~~Q~ 910 (1085)
..++++||||++++||++||+|.|||||||+.+.|.|..+ ....+|+|.++|.++- .+ -+.+.++|++|+
T Consensus 17 ~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~mIfQ~ 96 (316)
T COG0444 17 VVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQD 96 (316)
T ss_pred cEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHHHHhhcCceEEEEEcC
Confidence 4689999999999999999999999999999999999764 2356789999998642 22 134579999999
Q ss_pred CC--CCCCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCC
Q 001400 911 DI--HSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPS 988 (1085)
Q Consensus 911 ~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~ 988 (1085)
+. +.|-+||.+.+.-......... ..++..+.+.++++.+++.+-.......| .+|||||||||.||.||+.+|+
T Consensus 97 p~~sLnPv~~Ig~Qi~E~l~~h~~~~-~~~ea~~~a~~~L~~Vgi~~~~~~~~~YP--helSGGMrQRV~IAmala~~P~ 173 (316)
T COG0444 97 PMTSLNPVMTIGDQIAEVLRLHGKGL-SKKEAKERAIELLELVGIPDPERRLKSYP--HELSGGMRQRVMIAMALALNPK 173 (316)
T ss_pred chhhcCChhhHHHHHHHHHHHhhcch-hhHHHHHHHHHHHHHcCCCCHHHHHhhCC--cccCCcHHHHHHHHHHHhCCCC
Confidence 75 5688899887764433221110 23445667888999999876543333333 5899999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCCC
Q 001400 989 IVFMDEPTSGLDARAAAIVMRTVRNIVN-TGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGS 1056 (1085)
Q Consensus 989 illlDEPtsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~~ 1056 (1085)
+||.||||++||...+++|+++|+++.+ .|.|+|+||||+.. +.+.||||.||. .|++++.|+..+
T Consensus 174 LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~v-va~~aDri~VMY-aG~iVE~g~~~~ 240 (316)
T COG0444 174 LLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGV-VAEIADRVAVMY-AGRIVEEGPVEE 240 (316)
T ss_pred EEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhcceEEEEE-CcEEEEeCCHHH
Confidence 9999999999999999999999999986 69999999999975 889999999998 589999998754
|
|
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-35 Score=330.51 Aligned_cols=211 Identities=21% Similarity=0.286 Sum_probs=171.3
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCC--CceeeEEEECCccCCCC-----CCCceEEEEccCCCC
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHH--LQVSGKITYNGHGFKEF-----VPPRTSAYVSQQDWQ 220 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~--~~~~G~i~~~G~~~~~~-----~~~~~~~yv~Q~d~~ 220 (1085)
..+|+|+|+.|++|++++|+|||||||||||++|+|...+. .+.+|+|.++|.++... ..++.++||+|++++
T Consensus 95 ~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~~~ 174 (329)
T PRK14257 95 KHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTP 174 (329)
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhhhccEEEEecCCcc
Confidence 35999999999999999999999999999999999987531 13489999999988532 235679999999997
Q ss_pred CCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCccccccccc
Q 001400 221 VAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVG 300 (1085)
Q Consensus 221 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 300 (1085)
+. .||+|||.|+....+... .+ ..+..++.+++.++|.+..++.++
T Consensus 175 ~~-~ti~eNi~~~~~~~~~~~-~~--------------------------------~~~~~~~~~l~~~~L~~~l~~~~~ 220 (329)
T PRK14257 175 FE-MSIFDNVAYGPRNNGIND-RK--------------------------------ILEKIVEKSLKSAALWDEVKDDLD 220 (329)
T ss_pred CC-CcHHHHHHhHHHhcCCCh-HH--------------------------------HHHHHHHHHHHHcCCcchhhhhhh
Confidence 75 799999998643221100 00 001125566777777655556665
Q ss_pred CcccccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEE
Q 001400 301 DEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVIL 380 (1085)
Q Consensus 301 ~~~~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~ 380 (1085)
. ...+|||||||||+|||||+.+|+||+|||||+|||+.+...+.+.|+++.+ + .++++++|....+.+++|+|++
T Consensus 221 ~-~~~~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~--~-~Tii~iTH~l~~i~~~~Driiv 296 (329)
T PRK14257 221 K-AGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKK--K-YSIIIVTHSMAQAQRISDETVF 296 (329)
T ss_pred C-CcccCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc--C-CEEEEEeCCHHHHHHhCCEEEE
Confidence 3 5668999999999999999999999999999999999999999999998864 3 5666788999999999999999
Q ss_pred ecCCeEEEecChhhHH
Q 001400 381 LSEGQIVYQGPRVSVL 396 (1085)
Q Consensus 381 L~~G~iv~~G~~~~~~ 396 (1085)
|++|+++..|+++++.
T Consensus 297 l~~G~i~e~g~~~~l~ 312 (329)
T PRK14257 297 FYQGWIEEAGETKTIF 312 (329)
T ss_pred EECCEEEEeCCHHHHh
Confidence 9999999999998874
|
|
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-35 Score=320.87 Aligned_cols=209 Identities=21% Similarity=0.291 Sum_probs=166.2
Q ss_pred CCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCC--C-eeeeEEEEcCccCCh-----hcccceEEEEccCC
Q 001400 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTG--G-IIEGDIYISGYPKRQ-----ETFARISGYCEQND 911 (1085)
Q Consensus 840 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~--~-~~~G~i~i~g~~~~~-----~~~~~~~gy~~Q~~ 911 (1085)
++..+|+|+||+|++||+++|+|+||||||||+++|+|.... . +.+|+|.++|.++.. ..+++.++|++|++
T Consensus 16 ~~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~ 95 (251)
T PRK14244 16 GSKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAKVGMVFQKP 95 (251)
T ss_pred CCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHhhhEEEEecCc
Confidence 345799999999999999999999999999999999997531 1 358999999987532 13466799999998
Q ss_pred CCCCCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEE
Q 001400 912 IHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVF 991 (1085)
Q Consensus 912 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~ill 991 (1085)
.+++. |++||+.+....+.. .......++.++++++.+++.+........ .+.+||+|||||++|||||+.+|+|||
T Consensus 96 ~~~~~-tv~~ni~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-~~~~LS~Gq~qrv~laral~~~p~lll 172 (251)
T PRK14244 96 NPFPK-SIYDNVAYGPKLHGL-AKNKKKLDEIVEKSLTSVGLWEELGDRLKD-SAFELSGGQQQRLCIARAIAVKPTMLL 172 (251)
T ss_pred ccccC-CHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHHHcCCCchhhhHhhc-ChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 88875 999999876432211 111223345577889999886421111111 235799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCC
Q 001400 992 MDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1085)
Q Consensus 992 lDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~ 1054 (1085)
|||||+|||+.++..+.+.|+++. +|+|||++||+++ ++.+.+|++++|++ |++++.|+.
T Consensus 173 lDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiiisH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 232 (251)
T PRK14244 173 MDEPCSALDPVATNVIENLIQELK-KNFTIIVVTHSMK-QAKKVSDRVAFFQS-GRIVEYNTT 232 (251)
T ss_pred EeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHhhcCEEEEEEC-CEEEEeCCH
Confidence 999999999999999999999985 5899999999986 46778999999985 688888764
|
|
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-35 Score=316.68 Aligned_cols=195 Identities=27% Similarity=0.379 Sum_probs=163.6
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCC------CCceEEEEccCCCCC
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV------PPRTSAYVSQQDWQV 221 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~------~~~~~~yv~Q~d~~~ 221 (1085)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|. +|+|.++|.++.... .++.++|++|++.++
T Consensus 14 ~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~ 90 (214)
T cd03292 14 TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPT---SGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLL 90 (214)
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcccCCHHHHHHHHHheEEEecCchhc
Confidence 36999999999999999999999999999999999998776 999999998875432 235799999999889
Q ss_pred CCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccC
Q 001400 222 AEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGD 301 (1085)
Q Consensus 222 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 301 (1085)
+.+||+||+.+.....+.. .+ .....++++++.+||++..++.+
T Consensus 91 ~~~t~~~~l~~~~~~~~~~--~~--------------------------------~~~~~~~~~l~~~~l~~~~~~~~-- 134 (214)
T cd03292 91 PDRNVYENVAFALEVTGVP--PR--------------------------------EIRKRVPAALELVGLSHKHRALP-- 134 (214)
T ss_pred cCCcHHHHHHHHHHHcCCC--HH--------------------------------HHHHHHHHHHHHcCCHHHhhCCh--
Confidence 9999999998864332110 00 01123677899999987776654
Q ss_pred cccccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEe
Q 001400 302 EMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILL 381 (1085)
Q Consensus 302 ~~~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L 381 (1085)
.+||||||||++||+||+.+|++++|||||+|||+.++..+.+.|+++.+. +++++.++|+.+++.+++|++++|
T Consensus 135 ---~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~--~~tiiivtH~~~~~~~~~d~i~~l 209 (214)
T cd03292 135 ---AELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKA--GTTVVVATHAKELVDTTRHRVIAL 209 (214)
T ss_pred ---hhcCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHhCCEEEEE
Confidence 469999999999999999999999999999999999999999999998653 455666888889999999999999
Q ss_pred cCCeE
Q 001400 382 SEGQI 386 (1085)
Q Consensus 382 ~~G~i 386 (1085)
++|++
T Consensus 210 ~~G~~ 214 (214)
T cd03292 210 ERGKL 214 (214)
T ss_pred eCCcC
Confidence 99974
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-35 Score=320.36 Aligned_cols=208 Identities=23% Similarity=0.277 Sum_probs=166.7
Q ss_pred CCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCC---eeeeEEEEcCccCCh-----hcccceEEEEccCC
Q 001400 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGG---IIEGDIYISGYPKRQ-----ETFARISGYCEQND 911 (1085)
Q Consensus 840 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~---~~~G~i~i~g~~~~~-----~~~~~~~gy~~Q~~ 911 (1085)
++..+|+|+||+|++||+++|+|+||||||||+++|+|..++. +.+|+|.++|.++.. ...++.+||++|++
T Consensus 15 ~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~ 94 (251)
T PRK14270 15 GEKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKP 94 (251)
T ss_pred CCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHHHHHhheEEEecCC
Confidence 4457999999999999999999999999999999999975421 257999999987632 23456799999998
Q ss_pred CCCCCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcc-cccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEE
Q 001400 912 IHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSL-SGALIGLPGINGLSTEQRKRLTIAVELVANPSIV 990 (1085)
Q Consensus 912 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~il 990 (1085)
.+++ .|++||+.|....... .........++++++.+++.+. .+.. . ..+..||+|||||++|||||+.+|+||
T Consensus 95 ~~~~-~tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~-~-~~~~~LS~G~~qrv~laral~~~p~ll 169 (251)
T PRK14270 95 NPFP-MSIYDNVAYGPRIHGI--KDKKELDKIVEWALKKAALWDEVKDDL-K-KSALKLSGGQQQRLCIARTIAVKPDVI 169 (251)
T ss_pred CcCC-CcHHHHHHhHHHhcCC--CcHHHHHHHHHHHHHHcCCchhhhhHh-h-CCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 8887 8999999876433211 1122334456788888887421 1111 1 123579999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCC
Q 001400 991 FMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1085)
Q Consensus 991 llDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~ 1055 (1085)
+|||||+|||+.++..+.+.|+++.+ +.|||++||+++ ++.+.+|++++|++ |++++.|+..
T Consensus 170 llDEP~~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~-~~~~~~d~v~~l~~-G~i~~~~~~~ 231 (251)
T PRK14270 170 LMDEPTSALDPISTLKIEDLMVELKK-EYTIVIVTHNMQ-QASRVSDYTAFFLM-GDLIEFNKTE 231 (251)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEEcCHH-HHHHhcCEEEEEEC-CeEEEeCCHH
Confidence 99999999999999999999999865 689999999986 47788999999985 7888888754
|
|
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-35 Score=320.26 Aligned_cols=206 Identities=19% Similarity=0.332 Sum_probs=170.9
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCC----CceEEEEccCCCCCCC
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP----PRTSAYVSQQDWQVAE 223 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 223 (1085)
+.+|+|+|+++++|++++|+|||||||||||++|+|.++|. +|+|+++|.++..... ++.++|++|++.+++.
T Consensus 16 ~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 92 (241)
T PRK10895 16 RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRD---AGNIIIDDEDISLLPLHARARRGIGYLPQEASIFRR 92 (241)
T ss_pred EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHHHHHHhCeEEeccCCccccc
Confidence 46999999999999999999999999999999999998776 9999999988754322 3579999999988888
Q ss_pred CCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCcc
Q 001400 224 MTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEM 303 (1085)
Q Consensus 224 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 303 (1085)
+||+||+.+..+...... . ......++++++.+||++..+..
T Consensus 93 ~tv~enl~~~~~~~~~~~---------~------------------------~~~~~~~~~~l~~~~l~~~~~~~----- 134 (241)
T PRK10895 93 LSVYDNLMAVLQIRDDLS---------A------------------------EQREDRANELMEEFHIEHLRDSM----- 134 (241)
T ss_pred CcHHHHHhhhhhcccccC---------H------------------------HHHHHHHHHHHHHcCCHHHhhcc-----
Confidence 999999987533211000 0 00122467789999998765554
Q ss_pred cccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEecC
Q 001400 304 LKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSE 383 (1085)
Q Consensus 304 ~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~~ 383 (1085)
.+.|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.++.++. . +.+++.++|+..++.+++|++++|++
T Consensus 135 ~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~-g~tiii~sH~~~~~~~~~d~v~~l~~ 212 (241)
T PRK10895 135 GQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRD-S-GLGVLITDHNVRETLAVCERAYIVSQ 212 (241)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-c-CCEEEEEEcCHHHHHHhcCEEEEEeC
Confidence 456999999999999999999999999999999999999999999998864 2 44566677888899999999999999
Q ss_pred CeEEEecChhhHH
Q 001400 384 GQIVYQGPRVSVL 396 (1085)
Q Consensus 384 G~iv~~G~~~~~~ 396 (1085)
|++++.|+++++.
T Consensus 213 G~i~~~~~~~~~~ 225 (241)
T PRK10895 213 GHLIAHGTPTEIL 225 (241)
T ss_pred CeEEeeCCHHHHh
Confidence 9999999987763
|
|
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-35 Score=319.70 Aligned_cols=206 Identities=23% Similarity=0.303 Sum_probs=166.3
Q ss_pred eecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCC--CceeeEEEECCccCCCC-----CCCceEEEEccCCCCC
Q 001400 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHH--LQVSGKITYNGHGFKEF-----VPPRTSAYVSQQDWQV 221 (1085)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~--~~~~G~i~~~G~~~~~~-----~~~~~~~yv~Q~d~~~ 221 (1085)
.+|+|+|++|++||+++|+|||||||||||++|+|.+++. .+.+|+|.++|.++... ..++.++|++|++..+
T Consensus 21 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~ 100 (254)
T PRK14273 21 KALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILELRRKIGMVFQTPNPF 100 (254)
T ss_pred eeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHHHHhhceEEEeeccccc
Confidence 5899999999999999999999999999999999998752 12489999999876421 1246799999998877
Q ss_pred CCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCc----ccccc
Q 001400 222 AEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLD----TCADT 297 (1085)
Q Consensus 222 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~----~~~dt 297 (1085)
+ +||+||+.|+....+.... ......++.+++.+|+. +..++
T Consensus 101 ~-~tv~eni~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~l~~~~~~ 146 (254)
T PRK14273 101 L-MSIYDNISYGPKIHGTKDK---------------------------------KKLDEIVEQSLKKSALWNEVKDKLNT 146 (254)
T ss_pred c-CcHHHHHHHHHHhcCCCCH---------------------------------HHHHHHHHHHHHHhCCchhhHHHHhC
Confidence 4 8999999886432211000 00112356677777773 33454
Q ss_pred cccCcccccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCe
Q 001400 298 LVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDD 377 (1085)
Q Consensus 298 ~vg~~~~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ 377 (1085)
. ++.|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++++ + ++++.++|+.+++.+++|+
T Consensus 147 ~-----~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~-~tvii~sH~~~~~~~~~d~ 218 (254)
T PRK14273 147 N-----ALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKE--S-YTIIIVTHNMQQAGRISDR 218 (254)
T ss_pred C-----cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhc--C-CEEEEEeCCHHHHHHhCCE
Confidence 3 457999999999999999999999999999999999999999999999853 3 5566688888999999999
Q ss_pred EEEecCCeEEEecChhhHH
Q 001400 378 VILLSEGQIVYQGPRVSVL 396 (1085)
Q Consensus 378 ii~L~~G~iv~~G~~~~~~ 396 (1085)
+++|++|+++..|+.+++.
T Consensus 219 i~~l~~G~i~~~g~~~~~~ 237 (254)
T PRK14273 219 TAFFLNGCIEEESSTDELF 237 (254)
T ss_pred EEEEECCEEEEeCCHHHHH
Confidence 9999999999999988764
|
|
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-35 Score=368.83 Aligned_cols=205 Identities=27% Similarity=0.369 Sum_probs=165.2
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCC---CceEEEEccCCCCCCCC
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP---PRTSAYVSQQDWQVAEM 224 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 224 (1085)
.++|+|+|++|+|||.++|+||||||||||+|+|+|.++|. +|+|.+||+++++... ++.++||+|++.+|+ .
T Consensus 466 ~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~---~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~-g 541 (686)
T TIGR03797 466 PLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPE---SGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMS-G 541 (686)
T ss_pred ccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEEcCcCCHHHHHhccEEEccCCccCc-c
Confidence 46999999999999999999999999999999999999886 9999999999887653 578999999998776 5
Q ss_pred CHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCccc
Q 001400 225 TVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEML 304 (1085)
Q Consensus 225 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 304 (1085)
|++|||.++.. ...+.+.++++ ..+ .++.+ -.|++..||.+|+. .
T Consensus 542 TI~eNi~~~~~-----~~~e~i~~al~---~a~------------------------l~~~i--~~lp~G~dt~ige~-G 586 (686)
T TIGR03797 542 SIFENIAGGAP-----LTLDEAWEAAR---MAG------------------------LAEDI--RAMPMGMHTVISEG-G 586 (686)
T ss_pred cHHHHHhcCCC-----CCHHHHHHHHH---HcC------------------------cHHHH--HhccccccccccCC-C
Confidence 99999987522 01111111110 000 11111 23677889999975 4
Q ss_pred ccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEecCC
Q 001400 305 KGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEG 384 (1085)
Q Consensus 305 ~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~~G 384 (1085)
.+||||||||++||||++++|++|+||||||+||+.++.+|.+.|+++ ++|+|+ ++|.. +....+|+|++|++|
T Consensus 587 ~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~----~~T~Ii-ItHr~-~~i~~~D~Iivl~~G 660 (686)
T TIGR03797 587 GTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL----KVTRIV-IAHRL-STIRNADRIYVLDAG 660 (686)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh----CCeEEE-EecCh-HHHHcCCEEEEEECC
Confidence 689999999999999999999999999999999999999999999875 345554 55655 455779999999999
Q ss_pred eEEEecChhhHHH
Q 001400 385 QIVYQGPRVSVLD 397 (1085)
Q Consensus 385 ~iv~~G~~~~~~~ 397 (1085)
+++++|+++++++
T Consensus 661 ~iv~~G~~~~Ll~ 673 (686)
T TIGR03797 661 RVVQQGTYDELMA 673 (686)
T ss_pred EEEEECCHHHHHh
Confidence 9999999998864
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-35 Score=353.35 Aligned_cols=219 Identities=26% Similarity=0.348 Sum_probs=178.7
Q ss_pred ccCCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCCh----hcccceEEEEccCCCC
Q 001400 838 LEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ----ETFARISGYCEQNDIH 913 (1085)
Q Consensus 838 ~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~----~~~~~~~gy~~Q~~~~ 913 (1085)
.+++..+|+|+||+|.+||++||+||||||||||+++|+|..+ +.+|+|.++|.++.. ...++.+||++|++.+
T Consensus 13 ~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~ 90 (501)
T PRK10762 13 AFPGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYT--RDAGSILYLGKEVTFNGPKSSQEAGIGIIHQELNL 90 (501)
T ss_pred EeCCeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECCCCCHHHHHhCCEEEEEcchhc
Confidence 3455679999999999999999999999999999999999876 468999999987532 1134579999999988
Q ss_pred CCCCCHHHHHHHhhhhcCC-CcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q 001400 914 SPGLTVLESLLFSAWLRLP-SEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFM 992 (1085)
Q Consensus 914 ~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illl 992 (1085)
++.+||+||+.|+...+.. ........++.++++++.+++.+..+..+ ..||||||||++|||||+.+|++|||
T Consensus 91 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~lllL 165 (501)
T PRK10762 91 IPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLV-----GELSIGEQQMVEIAKVLSFESKVIIM 165 (501)
T ss_pred cCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCch-----hhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 8999999999886432110 11122333456788999999987766543 47999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCCCc-hHHHHHHH
Q 001400 993 DEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGSK-SCELIKYF 1065 (1085)
Q Consensus 993 DEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~~~-~~~~~~~~ 1065 (1085)
||||+|||+.++..+++.|+++.+.|.|||++|||++ ++...||++++|++ |+++..|+..+. ...+.+++
T Consensus 166 DEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~-~~~~~~d~i~~l~~-G~i~~~~~~~~~~~~~~~~~~ 237 (501)
T PRK10762 166 DEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLK-EIFEICDDVTVFRD-GQFIAEREVADLTEDSLIEMM 237 (501)
T ss_pred eCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEeC-CEEEEecCcCcCCHHHHHHHh
Confidence 9999999999999999999999877999999999986 47788999999985 789988887653 23344443
|
|
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-35 Score=317.91 Aligned_cols=202 Identities=26% Similarity=0.316 Sum_probs=167.2
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCC----CceEEEEccCCCCCCC
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP----PRTSAYVSQQDWQVAE 223 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 223 (1085)
.++|+|+|+++++|++++|+|||||||||||++|+|.++|. +|+|.++|.++..... ++.++|++|++.+++.
T Consensus 13 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 89 (230)
T TIGR03410 13 SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVK---SGSIRLDGEDITKLPPHERARAGIAYVPQGREIFPR 89 (230)
T ss_pred eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEECCCCCHHHHHHhCeEEeccCCcccCC
Confidence 36999999999999999999999999999999999999876 9999999988754322 3569999999988999
Q ss_pred CCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhC-CcccccccccCc
Q 001400 224 MTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILG-LDTCADTLVGDE 302 (1085)
Q Consensus 224 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lg-L~~~~dt~vg~~ 302 (1085)
+||+||+.++....+.. .....+.+++.++ +.+..++.
T Consensus 90 ~tv~~~l~~~~~~~~~~-------------------------------------~~~~~~~~l~~~~~l~~~~~~~---- 128 (230)
T TIGR03410 90 LTVEENLLTGLAALPRR-------------------------------------SRKIPDEIYELFPVLKEMLGRR---- 128 (230)
T ss_pred CcHHHHHHHHHHhcCcc-------------------------------------hHHHHHHHHHHHHhHHHHhhCC----
Confidence 99999998764321100 0011345566665 45444544
Q ss_pred ccccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEec
Q 001400 303 MLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLS 382 (1085)
Q Consensus 303 ~~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~ 382 (1085)
++.||||||||++||+||+.+|++++|||||+|||+.++.++.+.|+++++.. +++++.++|+.+++..++|+|++|+
T Consensus 129 -~~~LS~G~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~-~~tii~~sH~~~~~~~~~d~v~~l~ 206 (230)
T TIGR03410 129 -GGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEG-GMAILLVEQYLDFARELADRYYVME 206 (230)
T ss_pred -hhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcC-CcEEEEEeCCHHHHHHhCCEEEEEE
Confidence 45699999999999999999999999999999999999999999999987532 4556668888999999999999999
Q ss_pred CCeEEEecChhhH
Q 001400 383 EGQIVYQGPRVSV 395 (1085)
Q Consensus 383 ~G~iv~~G~~~~~ 395 (1085)
+|++++.|+.+++
T Consensus 207 ~g~i~~~~~~~~~ 219 (230)
T TIGR03410 207 RGRVVASGAGDEL 219 (230)
T ss_pred CCEEEEECCHHHc
Confidence 9999999998765
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-35 Score=329.02 Aligned_cols=205 Identities=24% Similarity=0.321 Sum_probs=169.5
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCC-------CCceEEEEccCCC-
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV-------PPRTSAYVSQQDW- 219 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~-------~~~~~~yv~Q~d~- 219 (1085)
+.+|+|+|++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++.
T Consensus 20 ~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~ig~v~q~~~~ 96 (287)
T PRK13641 20 KKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPS---SGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEA 96 (287)
T ss_pred ccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEECccccccchHHHHHhceEEEEeChhh
Confidence 45999999999999999999999999999999999999876 999999998875321 1357999999962
Q ss_pred CCCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCc-cccccc
Q 001400 220 QVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLD-TCADTL 298 (1085)
Q Consensus 220 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~ 298 (1085)
.+..+||+||+.|+....+... .+...+++++++.+||+ ...++.
T Consensus 97 ~~~~~tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gL~~~~~~~~ 142 (287)
T PRK13641 97 QLFENTVLKDVEFGPKNFGFSE----------------------------------DEAKEKALKWLKKVGLSEDLISKS 142 (287)
T ss_pred hhccchHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCChhHhhCC
Confidence 3446899999988643221100 00122477889999996 455555
Q ss_pred ccCcccccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeE
Q 001400 299 VGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDV 378 (1085)
Q Consensus 299 vg~~~~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i 378 (1085)
+ +.|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++.+ .+++|+.++|+.+++.++||++
T Consensus 143 ~-----~~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~--~g~tvlivsH~~~~~~~~~d~v 215 (287)
T PRK13641 143 P-----FELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQK--AGHTVILVTHNMDDVAEYADDV 215 (287)
T ss_pred c-----ccCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh--CCCEEEEEeCCHHHHHHhCCEE
Confidence 4 46999999999999999999999999999999999999999999999864 2566667889999999999999
Q ss_pred EEecCCeEEEecChhhHH
Q 001400 379 ILLSEGQIVYQGPRVSVL 396 (1085)
Q Consensus 379 i~L~~G~iv~~G~~~~~~ 396 (1085)
++|++|++++.|+.+++.
T Consensus 216 ~~l~~G~i~~~g~~~~~~ 233 (287)
T PRK13641 216 LVLEHGKLIKHASPKEIF 233 (287)
T ss_pred EEEECCEEEEeCCHHHHh
Confidence 999999999999988764
|
|
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-35 Score=320.12 Aligned_cols=208 Identities=24% Similarity=0.316 Sum_probs=165.0
Q ss_pred CCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCC---CeeeeEEEEcCccCCh-----hcccceEEEEccCC
Q 001400 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTG---GIIEGDIYISGYPKRQ-----ETFARISGYCEQND 911 (1085)
Q Consensus 840 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~---~~~~G~i~i~g~~~~~-----~~~~~~~gy~~Q~~ 911 (1085)
++..+|+|+||+|++||+++|+|+||||||||+++|+|.... .+.+|+|.++|.++.. ...++.++|++|++
T Consensus 14 ~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~ 93 (250)
T PRK14240 14 GDFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQP 93 (250)
T ss_pred CCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHHHhccEEEEecCC
Confidence 345699999999999999999999999999999999996431 1257999999987642 23466799999998
Q ss_pred CCCCCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEE
Q 001400 912 IHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVF 991 (1085)
Q Consensus 912 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~ill 991 (1085)
.+++ .|++||+.+....+.. .......+.++++++.+++.+........ .+..||+|||||++|||||+.+|++|+
T Consensus 94 ~~~~-~t~~~ni~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~~~-~~~~LS~G~~qrv~laral~~~p~lll 169 (250)
T PRK14240 94 NPFP-MSIYDNVAYGPRTHGI--KDKKKLDEIVEKSLKGAALWDEVKDRLKK-SALGLSGGQQQRLCIARALAVEPEVLL 169 (250)
T ss_pred ccCc-ccHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHcCCchhhHHHHhc-CCCCCCHHHHHHHHHHHHHhcCCCEEE
Confidence 8877 8999999886433211 11223345677888888764211111111 235799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCC
Q 001400 992 MDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1085)
Q Consensus 992 lDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~ 1054 (1085)
|||||+|||+.++..+.+.|+++. ++.|||++||+++ .+.+.+|++++|++ |+++..|+.
T Consensus 170 lDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~sH~~~-~~~~~~d~v~~l~~-G~i~~~~~~ 229 (250)
T PRK14240 170 MDEPTSALDPISTLKIEELIQELK-KDYTIVIVTHNMQ-QASRISDKTAFFLN-GEIVEFGDT 229 (250)
T ss_pred EeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEEeCHH-HHHhhCCEEEEEEC-CEEEEeCCH
Confidence 999999999999999999999985 4899999999986 47788999999985 688888764
|
|
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-35 Score=330.28 Aligned_cols=217 Identities=16% Similarity=0.199 Sum_probs=172.0
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCC-CceeeEEEECCccCCCCCC-------CceEEEEccCCC
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHH-LQVSGKITYNGHGFKEFVP-------PRTSAYVSQQDW 219 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~-~~~~G~i~~~G~~~~~~~~-------~~~~~yv~Q~d~ 219 (1085)
..+|+|||++|++||+++|+|+||||||||+++|+|++++. ...+|+|.++|.++..... ++.++||+|++.
T Consensus 20 ~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~Q~~~ 99 (330)
T PRK15093 20 VKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQ 99 (330)
T ss_pred EEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCcc
Confidence 56999999999999999999999999999999999998642 2358999999998765432 246999999975
Q ss_pred --CCCCCCHHHHHHHhhhhcCC-CCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCccccc
Q 001400 220 --QVAEMTVRETLDFAGQCQGV-GSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCAD 296 (1085)
Q Consensus 220 --~~~~lTV~E~l~f~~~~~~~-~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~d 296 (1085)
+.+.+||.+++.+....... +..+ ... .+....+.++|+.+||.+..+
T Consensus 100 ~~l~p~~tv~~~l~~~~~~~~~~~~~~----------------~~~-------------~~~~~~~~~~L~~~gL~~~~~ 150 (330)
T PRK15093 100 SCLDPSERVGRQLMQNIPGWTYKGRWW----------------QRF-------------GWRKRRAIELLHRVGIKDHKD 150 (330)
T ss_pred hhcCccccHHHHHHHHHHhhhcccccc----------------ccH-------------HHHHHHHHHHHHHCCCCChHH
Confidence 57889999999764221100 0000 000 001234778999999975321
Q ss_pred ccccCcccccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcC
Q 001400 297 TLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFD 376 (1085)
Q Consensus 297 t~vg~~~~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D 376 (1085)
. -+..+..|||||||||+||+||+.+|++|++||||+|||+.++.++.+.|+++.+.. +++++.++|+...+.+++|
T Consensus 151 ~--~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~-g~tii~itHdl~~v~~~~d 227 (330)
T PRK15093 151 A--MRSFPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNN-NTTILLISHDLQMLSQWAD 227 (330)
T ss_pred H--HhCCchhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhc-CCEEEEEECCHHHHHHhCC
Confidence 1 123456799999999999999999999999999999999999999999999987643 4567778999999999999
Q ss_pred eEEEecCCeEEEecChhhHH
Q 001400 377 DVILLSEGQIVYQGPRVSVL 396 (1085)
Q Consensus 377 ~ii~L~~G~iv~~G~~~~~~ 396 (1085)
+|++|++|+|++.|+.+++.
T Consensus 228 ri~vm~~G~ive~g~~~~i~ 247 (330)
T PRK15093 228 KINVLYCGQTVETAPSKELV 247 (330)
T ss_pred EEEEEECCEEEEECCHHHHH
Confidence 99999999999999988764
|
|
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-35 Score=319.75 Aligned_cols=211 Identities=25% Similarity=0.302 Sum_probs=165.6
Q ss_pred cCCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCe---eeeEEEEcCccCCh-----hcccceEEEEccC
Q 001400 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGI---IEGDIYISGYPKRQ-----ETFARISGYCEQN 910 (1085)
Q Consensus 839 ~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~---~~G~i~i~g~~~~~-----~~~~~~~gy~~Q~ 910 (1085)
+++..+|+|+||+|++||+++|+|+||||||||+++|+|..++.+ .+|+|.++|.++.. ..+++.++|++|+
T Consensus 14 ~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~ 93 (252)
T PRK14272 14 YGDKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAMRRRVGMVFQK 93 (252)
T ss_pred ECCEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHHhhceeEEEecc
Confidence 345679999999999999999999999999999999999764322 37999999987532 2345679999999
Q ss_pred CCCCCCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEE
Q 001400 911 DIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIV 990 (1085)
Q Consensus 911 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~il 990 (1085)
+.+++..|+.||+.+....... ...+...+.++++++.+++......... ..+..||+|||||++|||||+.+|+||
T Consensus 94 ~~~~~~~t~~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~~-~~~~~LS~G~~qrv~laral~~~p~ll 170 (252)
T PRK14272 94 PNPFPTMSVFDNVVAGLKLAGI--RDRDHLMEVAERSLRGAALWDEVKDRLK-TPATGLSGGQQQRLCIARALAVEPEIL 170 (252)
T ss_pred CccCcCCCHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHcCcchhhhhhhc-CCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 9989889999999875432211 1122223445666666665321111111 123579999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCC
Q 001400 991 FMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1085)
Q Consensus 991 llDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~ 1055 (1085)
+|||||+|||+.++..+.+.|++++ ++.|||++||+++ .+.+.+|++++|++ |++++.|+..
T Consensus 171 llDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~ 232 (252)
T PRK14272 171 LMDEPTSALDPASTARIEDLMTDLK-KVTTIIIVTHNMH-QAARVSDTTSFFLV-GDLVEHGPTD 232 (252)
T ss_pred EEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCHH
Confidence 9999999999999999999999986 4799999999986 47778999999985 6888888754
|
|
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-35 Score=316.75 Aligned_cols=201 Identities=25% Similarity=0.311 Sum_probs=164.4
Q ss_pred EeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCC--CeeeeEEEEcCccCChhcc-cceEEEEccCCC--CCCCCC
Q 001400 844 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTG--GIIEGDIYISGYPKRQETF-ARISGYCEQNDI--HSPGLT 918 (1085)
Q Consensus 844 ~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~--~~~~G~i~i~g~~~~~~~~-~~~~gy~~Q~~~--~~~~~t 918 (1085)
+|+|+||+|++|++++|+|+||||||||+++|+|..++ .+.+|+|.++|.++..... ++.++|++|++. +.+.+|
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t 80 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFT 80 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccC
Confidence 46899999999999999999999999999999998652 0168999999987654332 357999999974 556789
Q ss_pred HHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCc---ccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCC
Q 001400 919 VLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTS---LSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEP 995 (1085)
Q Consensus 919 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEP 995 (1085)
+.|++.+....... ......+.++++++.+++.+ ..+.. +..||+|||||++|||||+.+|+||+||||
T Consensus 81 ~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~~~LS~G~~qrv~laral~~~p~vllLDEP 152 (230)
T TIGR02770 81 MGNHAIETLRSLGK---LSKQARALILEALEAVGLPDPEEVLKKY-----PFQLSGGMLQRVMIALALLLEPPFLIADEP 152 (230)
T ss_pred HHHHHHHHHHHcCc---cHHHHHHHHHHHHHHcCCCchHHHHhCC-----hhhcCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 99999765432211 11233456788999999873 33332 357999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHC-CceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCC
Q 001400 996 TSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1085)
Q Consensus 996 tsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~ 1054 (1085)
|+|||+.++..+.+.|++++++ |+|||++||+++ ++...+|++++|++ |+++..|+.
T Consensus 153 t~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 210 (230)
T TIGR02770 153 TTDLDVVNQARVLKLLRELRQLFGTGILLITHDLG-VVARIADEVAVMDD-GRIVERGTV 210 (230)
T ss_pred ccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 9999999999999999998764 899999999986 47778999999985 788888864
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-35 Score=320.22 Aligned_cols=208 Identities=25% Similarity=0.310 Sum_probs=164.8
Q ss_pred CCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCC--C-CeeeeEEEEcCccCCh-----hcccceEEEEccCC
Q 001400 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKT--G-GIIEGDIYISGYPKRQ-----ETFARISGYCEQND 911 (1085)
Q Consensus 840 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~--~-~~~~G~i~i~g~~~~~-----~~~~~~~gy~~Q~~ 911 (1085)
++..+|+|+||+|++||+++|+|+||||||||+++|+|... + .+.+|+|.++|.++.. ..+++.++|++|++
T Consensus 16 ~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~ 95 (252)
T PRK14239 16 NKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQP 95 (252)
T ss_pred CCeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHhhhhcEEEEecCC
Confidence 34579999999999999999999999999999999999632 1 1247999999987632 23456799999998
Q ss_pred CCCCCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcc-cccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEE
Q 001400 912 IHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSL-SGALIGLPGINGLSTEQRKRLTIAVELVANPSIV 990 (1085)
Q Consensus 912 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~il 990 (1085)
.+++ .|++||+.+....+.. .......+.++++++.+++.+. .+.... .+..||+|||||++|||||+.+|+||
T Consensus 96 ~~~~-~tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~--~~~~LS~G~~qrv~laral~~~p~ll 170 (252)
T PRK14239 96 NPFP-MSIYENVVYGLRLKGI--KDKQVLDEAVEKSLKGASIWDEVKDRLHD--SALGLSGGQQQRVCIARVLATSPKII 170 (252)
T ss_pred ccCc-CcHHHHHHHHHHHcCC--CcHHHHHHHHHHHHHHcCCchhHHHHHhc--CcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 8876 7999999876432211 1122234556778888887431 111111 23579999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCC
Q 001400 991 FMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1085)
Q Consensus 991 llDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~ 1055 (1085)
||||||+|||+.++..+.+.|+++.+ ++|||++||+++ ++.+.+|++++|++ |++++.|+..
T Consensus 171 llDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~~-G~i~~~g~~~ 232 (252)
T PRK14239 171 LLDEPTSALDPISAGKIEETLLGLKD-DYTMLLVTRSMQ-QASRISDRTGFFLD-GDLIEYNDTK 232 (252)
T ss_pred EEcCCccccCHHHHHHHHHHHHHHhh-CCeEEEEECCHH-HHHHhCCEEEEEEC-CEEEEeCCHH
Confidence 99999999999999999999999864 699999999986 47788999999985 6888888754
|
|
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=321.58 Aligned_cols=204 Identities=25% Similarity=0.326 Sum_probs=168.3
Q ss_pred eecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCC---CCceEEEEccCCC-CCCCC
Q 001400 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV---PPRTSAYVSQQDW-QVAEM 224 (1085)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~---~~~~~~yv~Q~d~-~~~~l 224 (1085)
.+|+|+|++|++|++++|+||||||||||+++|+|.+++. +|+|.++|.++.... .++.++|++|++. +++..
T Consensus 23 ~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~ 99 (269)
T PRK13648 23 FTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVK---SGEIFYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGS 99 (269)
T ss_pred cceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHHHHHhheeEEEeChHHhcccc
Confidence 5899999999999999999999999999999999998876 999999998875432 2457999999975 67888
Q ss_pred CHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCccc
Q 001400 225 TVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEML 304 (1085)
Q Consensus 225 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 304 (1085)
|+++|+.|.....+.. .+ .....++.+++.+||.+..++.+
T Consensus 100 ~v~~~~~~~~~~~~~~--~~--------------------------------~~~~~~~~~l~~~~l~~~~~~~~----- 140 (269)
T PRK13648 100 IVKYDVAFGLENHAVP--YD--------------------------------EMHRRVSEALKQVDMLERADYEP----- 140 (269)
T ss_pred cHHHHHHhhHHhcCCC--HH--------------------------------HHHHHHHHHHHHcCCchhhhCCc-----
Confidence 9999998864322110 00 00123677899999987766554
Q ss_pred ccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEecCC
Q 001400 305 KGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEG 384 (1085)
Q Consensus 305 ~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~~G 384 (1085)
+.||||||||++||||++.+|++++|||||+|||+.++..+.+.|+++.+.. +++|+.++|+..++.. +|+|++|++|
T Consensus 141 ~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~-~~tiiivtH~~~~~~~-~d~i~~l~~G 218 (269)
T PRK13648 141 NALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEH-NITIISITHDLSEAME-ADHVIVMNKG 218 (269)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEecCchHHhc-CCEEEEEECC
Confidence 5699999999999999999999999999999999999999999999986533 3455557777777775 9999999999
Q ss_pred eEEEecChhhHH
Q 001400 385 QIVYQGPRVSVL 396 (1085)
Q Consensus 385 ~iv~~G~~~~~~ 396 (1085)
++++.|+.+++.
T Consensus 219 ~i~~~g~~~~~~ 230 (269)
T PRK13648 219 TVYKEGTPTEIF 230 (269)
T ss_pred EEEEecCHHHHh
Confidence 999999988764
|
|
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=314.13 Aligned_cols=198 Identities=25% Similarity=0.359 Sum_probs=162.8
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCC-------CceEEEEccCCCC
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP-------PRTSAYVSQQDWQ 220 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~-------~~~~~yv~Q~d~~ 220 (1085)
..+|+|+|+.|++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+
T Consensus 23 ~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~l 99 (228)
T PRK10584 23 LSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGS---SGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFML 99 (228)
T ss_pred eEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC---CeeEEECCEEcccCCHHHHHHHHhheEEEEEccccc
Confidence 35999999999999999999999999999999999998876 9999999998765322 2469999999988
Q ss_pred CCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCccccccccc
Q 001400 221 VAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVG 300 (1085)
Q Consensus 221 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 300 (1085)
++.+||.||+.+.....+.. . ......++++++.+||.+..+..+
T Consensus 100 ~~~~tv~~~l~~~~~~~~~~---~-------------------------------~~~~~~~~~~l~~~~l~~~~~~~~- 144 (228)
T PRK10584 100 IPTLNALENVELPALLRGES---S-------------------------------RQSRNGAKALLEQLGLGKRLDHLP- 144 (228)
T ss_pred CCCcCHHHHHHHHHHhcCCC---H-------------------------------HHHHHHHHHHHHHcCCHhHhhCCh-
Confidence 89999999998754322100 0 001224778899999987766654
Q ss_pred CcccccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEE
Q 001400 301 DEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVIL 380 (1085)
Q Consensus 301 ~~~~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~ 380 (1085)
..||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|+++++..+ ++|+.++|+.+++ +.+|++++
T Consensus 145 ----~~LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~-~tii~~sH~~~~~-~~~d~i~~ 218 (228)
T PRK10584 145 ----AQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHG-TTLILVTHDLQLA-ARCDRRLR 218 (228)
T ss_pred ----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcC-CEEEEEecCHHHH-HhCCEEEE
Confidence 46999999999999999999999999999999999999999999999865434 4555577777776 55999999
Q ss_pred ecCCeEEEe
Q 001400 381 LSEGQIVYQ 389 (1085)
Q Consensus 381 L~~G~iv~~ 389 (1085)
|++|++++.
T Consensus 219 l~~g~i~~~ 227 (228)
T PRK10584 219 LVNGQLQEE 227 (228)
T ss_pred EECCEEEec
Confidence 999999753
|
|
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=321.13 Aligned_cols=225 Identities=22% Similarity=0.285 Sum_probs=175.3
Q ss_pred CCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCC---CeeeeEEEEcCccCCh----hcccceEEEEccCCC
Q 001400 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTG---GIIEGDIYISGYPKRQ----ETFARISGYCEQNDI 912 (1085)
Q Consensus 840 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~---~~~~G~i~i~g~~~~~----~~~~~~~gy~~Q~~~ 912 (1085)
++..+|+|+||+|++||+++|+|+||||||||+++|+|..++ .+.+|+|.++|.++.. ...++.++|++|++.
T Consensus 32 ~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~ 111 (276)
T PRK14271 32 AGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEFRRRVGMLFQRPN 111 (276)
T ss_pred CCEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHHHhhheEEeccCCc
Confidence 456799999999999999999999999999999999997542 1468999999987532 234667999999988
Q ss_pred CCCCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q 001400 913 HSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFM 992 (1085)
Q Consensus 913 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illl 992 (1085)
+++ .|++||+.+...... .....+....+.++++.+++......... ..+..||+|||||++|||||+.+|+||||
T Consensus 112 l~~-~tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~l~-~~~~~LSgGq~qrl~LAral~~~p~lllL 187 (276)
T PRK14271 112 PFP-MSIMDNVLAGVRAHK--LVPRKEFRGVAQARLTEVGLWDAVKDRLS-DSPFRLSGGQQQLLCLARTLAVNPEVLLL 187 (276)
T ss_pred cCC-ccHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCCCchhhhHhh-CCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 887 799999987542211 11222333456778888888643211111 12457999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCCCc-----hHHHHHHHHh
Q 001400 993 DEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGSK-----SCELIKYFEV 1067 (1085)
Q Consensus 993 DEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~~~-----~~~~~~~~~~ 1067 (1085)
||||+|||+.+++.+.+.|+++.+ +.|||++||+++ ++.+.+|++++|++ |+++..|+..+. ......|+++
T Consensus 188 DEPt~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~-~~~~~~dri~~l~~-G~i~~~g~~~~~~~~~~~~~~~~~~~~ 264 (276)
T PRK14271 188 DEPTSALDPTTTEKIEEFIRSLAD-RLTVIIVTHNLA-QAARISDRAALFFD-GRLVEEGPTEQLFSSPKHAETARYVAG 264 (276)
T ss_pred cCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCHHHHHhCcCcHHHHHHHhh
Confidence 999999999999999999999865 589999999986 47788999999985 789988875431 1234566676
Q ss_pred cccc
Q 001400 1068 ESFM 1071 (1085)
Q Consensus 1068 ~~g~ 1071 (1085)
.+|-
T Consensus 265 ~~~~ 268 (276)
T PRK14271 265 LSGD 268 (276)
T ss_pred cCCc
Confidence 6553
|
|
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-35 Score=324.40 Aligned_cols=205 Identities=24% Similarity=0.361 Sum_probs=171.2
Q ss_pred eecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCC---CCceEEEEccCCC-CCCCC
Q 001400 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV---PPRTSAYVSQQDW-QVAEM 224 (1085)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~---~~~~~~yv~Q~d~-~~~~l 224 (1085)
.+|+|+|++|++||+++|+||||||||||+++|+|.++|. +|+|.++|.++.... ..+.++||+|++. .+...
T Consensus 18 ~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~ 94 (277)
T PRK13652 18 EALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPT---SGSVLIRGEPITKENIREVRKFVGLVFQNPDDQIFSP 94 (277)
T ss_pred ceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHHHHHhheEEEecCcccccccc
Confidence 4999999999999999999999999999999999998876 999999998775422 2356899999963 34568
Q ss_pred CHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCccc
Q 001400 225 TVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEML 304 (1085)
Q Consensus 225 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 304 (1085)
||.||+.+.....+... ......++++++.+||.+..++.+
T Consensus 95 tv~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~----- 135 (277)
T PRK13652 95 TVEQDIAFGPINLGLDE----------------------------------ETVAHRVSSALHMLGLEELRDRVP----- 135 (277)
T ss_pred cHHHHHHhHHHHcCCCH----------------------------------HHHHHHHHHHHHHCCChhHhcCCc-----
Confidence 99999987543211100 001224778899999988777655
Q ss_pred ccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEecCC
Q 001400 305 KGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEG 384 (1085)
Q Consensus 305 ~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~~G 384 (1085)
+.||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|+++.+.. +++|+.++|+.+++.+++|+|++|++|
T Consensus 136 ~~LS~Gq~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~-g~tvli~tH~~~~~~~~~drv~~l~~G 214 (277)
T PRK13652 136 HHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETY-GMTVIFSTHQLDLVPEMADYIYVMDKG 214 (277)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEecCHHHHHHhCCEEEEEECC
Confidence 4699999999999999999999999999999999999999999999987643 456666888899999999999999999
Q ss_pred eEEEecChhhHH
Q 001400 385 QIVYQGPRVSVL 396 (1085)
Q Consensus 385 ~iv~~G~~~~~~ 396 (1085)
++++.|+++++.
T Consensus 215 ~i~~~g~~~~~~ 226 (277)
T PRK13652 215 RIVAYGTVEEIF 226 (277)
T ss_pred eEEEECCHHHHh
Confidence 999999988774
|
|
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-35 Score=320.27 Aligned_cols=209 Identities=22% Similarity=0.246 Sum_probs=169.4
Q ss_pred cCCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCC---CeeeeEEEEcCccCCh-----hcccceEEEEccC
Q 001400 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTG---GIIEGDIYISGYPKRQ-----ETFARISGYCEQN 910 (1085)
Q Consensus 839 ~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~---~~~~G~i~i~g~~~~~-----~~~~~~~gy~~Q~ 910 (1085)
+++..+|+|+||++++||++||+|+||||||||+++|+|...+ .+.+|+|.++|.++.. ..+++.++|++|+
T Consensus 18 ~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~ 97 (261)
T PRK14263 18 YGNFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYIGMVFQQ 97 (261)
T ss_pred eCCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchHhhhhceEEEecC
Confidence 4567899999999999999999999999999999999997642 1258999999987532 2345679999999
Q ss_pred CCCCCCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEE
Q 001400 911 DIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIV 990 (1085)
Q Consensus 911 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~il 990 (1085)
+.++ .+|+.||+.+....+.. .....+.++++++.+++.+....... ..+..||+|||||++|||||+.+|++|
T Consensus 98 ~~~~-~~tv~enl~~~~~~~~~----~~~~~~~~~~~l~~~~l~~~i~~~~~-~~~~~LS~G~~qrv~laral~~~p~ll 171 (261)
T PRK14263 98 PNPF-SMSIFDNVAFGLRLNRY----KGDLGDRVKHALQGAALWDEVKDKLK-VSGLSLSGGQQQRLCIARAIATEPEVL 171 (261)
T ss_pred Cccc-cccHHHHHHHHHhhcCc----hHHHHHHHHHHHHHcCCchhhhhhhh-CCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 8877 58999999887543211 12233567888898888542221111 124579999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEe-------cCcEEEEecCCC
Q 001400 991 FMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMK-------RGGELIYAGPLG 1055 (1085)
Q Consensus 991 llDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~-------~gG~~~~~g~~~ 1055 (1085)
||||||+|||+.++..+.+.|+++. ++.|||++||+++ ++.+.+|++++|+ ++|+++..|+..
T Consensus 172 llDEPtsgLD~~~~~~l~~~l~~~~-~~~tii~isH~~~-~i~~~~d~v~~l~~~~~~~~~~G~i~~~g~~~ 241 (261)
T PRK14263 172 LLDEPCSALDPIATRRVEELMVELK-KDYTIALVTHNMQ-QAIRVADTTAFFSVDISQGTRTGYLVEMGPTA 241 (261)
T ss_pred EEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHHhCCEEEEEecccccccCCceEEEeCCHH
Confidence 9999999999999999999999985 4799999999986 4778899999996 468999998754
|
|
| >TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-35 Score=313.59 Aligned_cols=195 Identities=28% Similarity=0.418 Sum_probs=165.0
Q ss_pred eEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCCh------hcccceEEEEccCCCCCC
Q 001400 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ------ETFARISGYCEQNDIHSP 915 (1085)
Q Consensus 842 ~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~------~~~~~~~gy~~Q~~~~~~ 915 (1085)
..+|+|+||++++|+++||+|+||||||||+++|+|..+ +.+|+|.++|.+... ..+++.++|++|++.+++
T Consensus 18 ~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 95 (220)
T TIGR02982 18 KQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRS--VQEGSLKVLGQELYGASEKELVQLRRNIGYIFQAHNLLG 95 (220)
T ss_pred eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEhHhcCHhHHHHHHhheEEEcCChhhcC
Confidence 679999999999999999999999999999999999866 568999999987532 134678999999998888
Q ss_pred CCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCC
Q 001400 916 GLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEP 995 (1085)
Q Consensus 916 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEP 995 (1085)
..|+.||+.+...... .....+....++++++.+++.+..+... ..||+|||||++|||+|+.+|++|+||||
T Consensus 96 ~~t~~~n~~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS~G~~qrv~laral~~~p~illlDEP 168 (220)
T TIGR02982 96 FLTARQNVQMALELQP--NLSYQEARERARAMLEAVGLGDHLDYYP-----HNLSGGQKQRVAIARALVHRPKLVLADEP 168 (220)
T ss_pred CCCHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCChhhhhcCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 8999999987643221 1223334456789999999976665543 57999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHH-CCceEEEEecCccHHHHHhcCEEEEEecCcEE
Q 001400 996 TSGLDARAAAIVMRTVRNIVN-TGRTIVCTIHQPSIDIFESFDELLFMKRGGEL 1048 (1085)
Q Consensus 996 tsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~ 1048 (1085)
|+|||+.++..+.+.|+++.+ .|+|||++||+++ ..+.+|++++|++ |++
T Consensus 169 ~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~--~~~~~d~v~~l~~-g~~ 219 (220)
T TIGR02982 169 TAALDSKSGRDVVELMQKLAREQGCTILIVTHDNR--ILDVADRIVHMED-GKL 219 (220)
T ss_pred CCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH--HHhhCCEEEEEEC-CEE
Confidence 999999999999999999876 4899999999975 4578999999985 453
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. |
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-35 Score=318.79 Aligned_cols=203 Identities=26% Similarity=0.307 Sum_probs=168.1
Q ss_pred eecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCC------C---CCCceEEEEccCCC
Q 001400 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKE------F---VPPRTSAYVSQQDW 219 (1085)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~------~---~~~~~~~yv~Q~d~ 219 (1085)
.+|+|+|+++++|++++|+|||||||||||++|+|.+++. +|+|.++|.++.. . ..++.++|++|++.
T Consensus 16 ~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~ 92 (242)
T PRK11124 16 QALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPR---SGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQYN 92 (242)
T ss_pred eeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEecccccccchhhHHHHHhheEEEecCcc
Confidence 5999999999999999999999999999999999998776 9999999987521 0 12357999999998
Q ss_pred CCCCCCHHHHHHHhh-hhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCccccccc
Q 001400 220 QVAEMTVRETLDFAG-QCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTL 298 (1085)
Q Consensus 220 ~~~~lTV~E~l~f~~-~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~ 298 (1085)
+++.+||.||+.+.. ...+... .+....++++++.+||+...++.
T Consensus 93 ~~~~~tv~e~i~~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gl~~~~~~~ 138 (242)
T PRK11124 93 LWPHLTVQQNLIEAPCRVLGLSK----------------------------------DQALARAEKLLERLRLKPYADRF 138 (242)
T ss_pred ccCCCcHHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCChhhhhCC
Confidence 899999999997531 1111000 00112367888999998766655
Q ss_pred ccCcccccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeE
Q 001400 299 VGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDV 378 (1085)
Q Consensus 299 vg~~~~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i 378 (1085)
+ +.|||||||||+||||++.+|++++|||||+|||+.++..+.+.|+++.+ . +++++.++|+..++.+++|++
T Consensus 139 ~-----~~LS~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~-~-~~tii~~sh~~~~~~~~~d~i 211 (242)
T PRK11124 139 P-----LHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAE-T-GITQVIVTHEVEVARKTASRV 211 (242)
T ss_pred h-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHH-c-CCEEEEEeCCHHHHHHhcCEE
Confidence 4 46999999999999999999999999999999999999999999998864 2 455666888889999999999
Q ss_pred EEecCCeEEEecChhhH
Q 001400 379 ILLSEGQIVYQGPRVSV 395 (1085)
Q Consensus 379 i~L~~G~iv~~G~~~~~ 395 (1085)
++|.+|++++.|+.+++
T Consensus 212 ~~l~~g~i~~~~~~~~~ 228 (242)
T PRK11124 212 VYMENGHIVEQGDASCF 228 (242)
T ss_pred EEEECCEEEEeCCHHHh
Confidence 99999999999987654
|
|
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-35 Score=320.81 Aligned_cols=210 Identities=22% Similarity=0.274 Sum_probs=167.5
Q ss_pred CCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCC-e--eeeEEEEcCccCCh-----hcccceEEEEccCC
Q 001400 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGG-I--IEGDIYISGYPKRQ-----ETFARISGYCEQND 911 (1085)
Q Consensus 840 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~-~--~~G~i~i~g~~~~~-----~~~~~~~gy~~Q~~ 911 (1085)
++..+|+|+||+|++||+++|+|+||||||||+++|+|..++. + .+|+|.++|.++.. ...++.++|++|++
T Consensus 18 ~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~ 97 (259)
T PRK14260 18 NTSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININRLRRQIGMVFQRP 97 (259)
T ss_pred CCeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchHhhhhheEEEeccc
Confidence 3457999999999999999999999999999999999975421 2 47999999987532 23456799999999
Q ss_pred CCCCCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEE
Q 001400 912 IHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVF 991 (1085)
Q Consensus 912 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~ill 991 (1085)
.+++ .|++||+.+....+.. .......+.++++++.+++.+....... ..+..||+|||||++|||||+.+|++|+
T Consensus 98 ~l~~-~tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~~-~~~~~LS~G~~qrv~laral~~~p~lll 173 (259)
T PRK14260 98 NPFP-MSIYENVAYGVRISAK--LPQADLDEIVESALKGAALWQEVKDKLN-KSALGLSGGQQQRLCIARALAIKPKVLL 173 (259)
T ss_pred ccCC-ccHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHcCCcchhhhHhc-CCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 8887 8999999876433211 1222334456788888887421111111 1235799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEec----CcEEEEecCCC
Q 001400 992 MDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKR----GGELIYAGPLG 1055 (1085)
Q Consensus 992 lDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~----gG~~~~~g~~~ 1055 (1085)
|||||+|||+.++..+.+.|+++.+ ++|||++||+++ ++.+.+|++++|+. .|++++.|+..
T Consensus 174 LDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~i~~~~d~i~~l~~~~~~~G~i~~~~~~~ 239 (259)
T PRK14260 174 MDEPCSALDPIATMKVEELIHSLRS-ELTIAIVTHNMQ-QATRVSDFTAFFSTDESRIGQMVEFGVTT 239 (259)
T ss_pred EcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCeEEEEeccCCCCceEEEeCCHH
Confidence 9999999999999999999999864 699999999987 57788999999974 48999998754
|
|
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-35 Score=318.99 Aligned_cols=209 Identities=23% Similarity=0.291 Sum_probs=165.4
Q ss_pred CCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCC---eeeeEEEEcCccCCh-----hcccceEEEEccCC
Q 001400 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGG---IIEGDIYISGYPKRQ-----ETFARISGYCEQND 911 (1085)
Q Consensus 840 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~---~~~G~i~i~g~~~~~-----~~~~~~~gy~~Q~~ 911 (1085)
++..+|+|+||+|.+|+++||+|+||||||||+++|+|..++. +..|+|.++|.++.. ..+++.++|++|++
T Consensus 15 ~~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~~i~~v~q~~ 94 (251)
T PRK14249 15 HKHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQP 94 (251)
T ss_pred CCeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChHHhhceEEEEecCC
Confidence 4457999999999999999999999999999999999976521 236999999987532 23467799999999
Q ss_pred CCCCCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEE
Q 001400 912 IHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVF 991 (1085)
Q Consensus 912 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~ill 991 (1085)
.+++. |++||+.+....+... ..+...+.++++++.+++.+....... ..+..||+|||||++|||||+.+|++||
T Consensus 95 ~~~~~-tv~enl~~~~~~~~~~--~~~~~~~~~~~~l~~~~l~~~l~~~~~-~~~~~LS~Gq~qrv~laral~~~p~lll 170 (251)
T PRK14249 95 NPFPK-SIFDNVAFGPRMLGTT--AQSRLDEVVEKSLRQAALWDEVKDNLH-KSGLALSGGQQQRLCIARVLAIEPEVIL 170 (251)
T ss_pred ccCcC-cHHHHHhhHHHhcCCC--hhhHHHHHHHHHHHHhCCchhhhhHhh-CCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 88875 9999998865432111 112223446677787776532111111 1235799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCC
Q 001400 992 MDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1085)
Q Consensus 992 lDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~ 1055 (1085)
|||||+|||+.++..+.+.|+++. ++.|||++||+++ .+.+.+|++++|++ |++++.|+..
T Consensus 171 LDEPt~~LD~~~~~~l~~~l~~~~-~~~tilivsh~~~-~~~~~~d~i~~l~~-G~i~~~~~~~ 231 (251)
T PRK14249 171 MDEPCSALDPVSTMRIEELMQELK-QNYTIAIVTHNMQ-QAARASDWTGFLLT-GDLVEYGRTG 231 (251)
T ss_pred EeCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCHH-HHHhhCCEEEEEeC-CeEEEeCCHH
Confidence 999999999999999999999984 6899999999986 47778999999985 6888888754
|
|
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=319.98 Aligned_cols=211 Identities=23% Similarity=0.253 Sum_probs=168.2
Q ss_pred CCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCC---eeeeEEEEcCccCCh-----hcccceEEEEccCC
Q 001400 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGG---IIEGDIYISGYPKRQ-----ETFARISGYCEQND 911 (1085)
Q Consensus 840 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~---~~~G~i~i~g~~~~~-----~~~~~~~gy~~Q~~ 911 (1085)
++..+|+|+||++++||++||+|+||||||||+++|+|...+. ...|+|.++|.++.. ...++.++|++|++
T Consensus 18 ~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~ 97 (261)
T PRK14258 18 DTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKP 97 (261)
T ss_pred CCeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccchHHhhccEEEEecCC
Confidence 3446999999999999999999999999999999999976531 136999999987531 23466799999998
Q ss_pred CCCCCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEE
Q 001400 912 IHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVF 991 (1085)
Q Consensus 912 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~ill 991 (1085)
.+++ .|++||+.+....... ....+..+.+.++++.+++.+..+..... .+..||+|||||++|||+|+.+|++|+
T Consensus 98 ~l~~-~tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-~~~~LSgGq~qrv~laral~~~p~vll 173 (261)
T PRK14258 98 NLFP-MSVYDNVAYGVKIVGW--RPKLEIDDIVESALKDADLWDEIKHKIHK-SALDLSGGQQQRLCIARALAVKPKVLL 173 (261)
T ss_pred ccCc-ccHHHHHHHHHHhcCC--CcHHHHHHHHHHHHHHcCCcchhhhHhcC-CcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 8887 8999999876432211 11223345678889998875422111111 235799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHH-CCceEEEEecCccHHHHHhcCEEEEEecC----cEEEEecCCC
Q 001400 992 MDEPTSGLDARAAAIVMRTVRNIVN-TGRTIVCTIHQPSIDIFESFDELLFMKRG----GELIYAGPLG 1055 (1085)
Q Consensus 992 lDEPtsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~il~l~~g----G~~~~~g~~~ 1055 (1085)
|||||+|||+.++..+.+.|+++++ .|.|||++||+++ ++.+.||++++|++| |++++.|+..
T Consensus 174 LDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~-~i~~~~d~i~~l~~~~~~~G~i~~~~~~~ 241 (261)
T PRK14258 174 MDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLH-QVSRLSDFTAFFKGNENRIGQLVEFGLTK 241 (261)
T ss_pred EeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhcCEEEEEccCCCcCceEEEeCCHH
Confidence 9999999999999999999999865 4899999999986 577889999999863 7999988754
|
|
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-35 Score=318.95 Aligned_cols=209 Identities=24% Similarity=0.258 Sum_probs=165.8
Q ss_pred CCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCC---eeeeEEEEcCccCC----hhcccceEEEEccCCC
Q 001400 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGG---IIEGDIYISGYPKR----QETFARISGYCEQNDI 912 (1085)
Q Consensus 840 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~---~~~G~i~i~g~~~~----~~~~~~~~gy~~Q~~~ 912 (1085)
+++.+|+|+||+|++||+++|+|+||||||||+++|+|..++. +.+|+|.++|.++. ....++.++|++|++.
T Consensus 14 ~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~q~~~ 93 (249)
T PRK14253 14 GENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADLRIKVGMVFQKPN 93 (249)
T ss_pred CCeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHHHhheeEEecCCC
Confidence 4567999999999999999999999999999999999975521 35899999998753 1234567999999998
Q ss_pred CCCCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q 001400 913 HSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFM 992 (1085)
Q Consensus 913 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illl 992 (1085)
+++ .|+.||+.+....... .......+.+.++++.+++.+........ .+.+||+|||||++|||||+.+|+||||
T Consensus 94 ~~~-~tv~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~LS~G~~qrv~laral~~~p~llll 169 (249)
T PRK14253 94 PFP-MSIYENVAYGLRAQGI--KDKKVLDEVVERSLRGAALWDEVKDRLKS-HAFGLSGGQQQRLCIARTIAMEPDVILM 169 (249)
T ss_pred cCc-ccHHHHHHhHHHhcCC--CchHHHHHHHHHHHHHcCCchhhhHHhhc-CcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 887 7999999876432111 11222334567778888775321111111 2357999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCC
Q 001400 993 DEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1085)
Q Consensus 993 DEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~ 1055 (1085)
||||+|||+.++..+++.|+++.+ +.|||++||+++ ++.+.+|++++|++ |+++..|+..
T Consensus 170 DEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~~~~~d~i~~l~~-G~i~~~g~~~ 229 (249)
T PRK14253 170 DEPTSALDPIATHKIEELMEELKK-NYTIVIVTHSMQ-QARRISDRTAFFLM-GELVEHDDTQ 229 (249)
T ss_pred eCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEecCHH-HHHHhCCEEEEEEC-CEEEEeCCHH
Confidence 999999999999999999999865 689999999986 47788999999985 7899888753
|
|
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-34 Score=316.63 Aligned_cols=200 Identities=25% Similarity=0.379 Sum_probs=166.8
Q ss_pred eecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCC---CCceEEEEccCCCCCCCCC
Q 001400 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV---PPRTSAYVSQQDWQVAEMT 225 (1085)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~---~~~~~~yv~Q~d~~~~~lT 225 (1085)
.+|+|+|++|++|++++|+|||||||||||++|+|.++|. +|+|.++|.++.... .++.++|++|++.+++ .|
T Consensus 17 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~-~t 92 (241)
T PRK14250 17 EILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPT---EGSILIDGVDIKTIDVIDLRRKIGMVFQQPHLFE-GT 92 (241)
T ss_pred eeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEhhhcChHHhhhcEEEEecCchhch-hh
Confidence 5999999999999999999999999999999999998876 999999998775432 2457999999988776 69
Q ss_pred HHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCc-ccccccccCccc
Q 001400 226 VRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLD-TCADTLVGDEML 304 (1085)
Q Consensus 226 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~vg~~~~ 304 (1085)
|+||+.+.....+ . ...+++.+++.+||+ +..++. .
T Consensus 93 v~e~l~~~~~~~~--~------------------------------------~~~~~~~~l~~~~l~~~~~~~~-----~ 129 (241)
T PRK14250 93 VKDNIEYGPMLKG--E------------------------------------KNVDVEYYLSIVGLNKEYATRD-----V 129 (241)
T ss_pred HHHHHhcchhhcC--c------------------------------------HHHHHHHHHHHcCCCHHHhhCC-----c
Confidence 9999976432110 0 011356788889996 444443 4
Q ss_pred ccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEecCC
Q 001400 305 KGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEG 384 (1085)
Q Consensus 305 ~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~~G 384 (1085)
..|||||||||+||+|++.+|++++|||||+|||+.++..+.+.|+++++..+ ++|+.++|+.+++.+++|+|++|++|
T Consensus 130 ~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g-~tii~~sH~~~~~~~~~d~i~~l~~G 208 (241)
T PRK14250 130 KNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMN-LTVIWITHNMEQAKRIGDYTAFLNKG 208 (241)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCC-CEEEEEeccHHHHHHhCCEEEEEeCC
Confidence 56999999999999999999999999999999999999999999999875333 45666888999999999999999999
Q ss_pred eEEEecChhhHH
Q 001400 385 QIVYQGPRVSVL 396 (1085)
Q Consensus 385 ~iv~~G~~~~~~ 396 (1085)
+++..|+++++.
T Consensus 209 ~i~~~~~~~~~~ 220 (241)
T PRK14250 209 ILVEYAKTYDFF 220 (241)
T ss_pred EEEEeCCHHHHh
Confidence 999999887763
|
|
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-35 Score=334.53 Aligned_cols=199 Identities=27% Similarity=0.457 Sum_probs=169.9
Q ss_pred cceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCC-------CCCceEEEEccCCCCCCCCC
Q 001400 153 DLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEF-------VPPRTSAYVSQQDWQVAEMT 225 (1085)
Q Consensus 153 ~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~-------~~~~~~~yv~Q~d~~~~~lT 225 (1085)
|+|+.+++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++... ..++.++|++|++.+++.+|
T Consensus 15 ~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~---~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~t 91 (354)
T TIGR02142 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPD---EGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLS 91 (354)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCc
Confidence 999999999999999999999999999999998876 99999999887432 12467999999999999999
Q ss_pred HHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCcccc
Q 001400 226 VRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLK 305 (1085)
Q Consensus 226 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 305 (1085)
|+||+.|+.+... . . ....+++++++.+||++..++.+ .
T Consensus 92 v~enl~~~~~~~~--~----------~------------------------~~~~~~~~~l~~~gL~~~~~~~~-----~ 130 (354)
T TIGR02142 92 VRGNLRYGMKRAR--P----------S------------------------ERRISFERVIELLGIGHLLGRLP-----G 130 (354)
T ss_pred HHHHHHHHhhccC--h----------h------------------------HHHHHHHHHHHHcCChhHhcCCh-----h
Confidence 9999988643110 0 0 01224778899999988777654 4
Q ss_pred cCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEecCCe
Q 001400 306 GISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQ 385 (1085)
Q Consensus 306 ~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~~G~ 385 (1085)
.|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.+.. +++++.++|+.+++..++|+|++|++|+
T Consensus 131 ~LSgGqkqRvalAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~-g~tiiivtH~~~~~~~~~d~i~~l~~G~ 209 (354)
T TIGR02142 131 RLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEF-GIPILYVSHSLQEVLRLADRVVVLEDGR 209 (354)
T ss_pred hCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhc-CCEEEEEecCHHHHHHhCCEEEEEeCCE
Confidence 699999999999999999999999999999999999999999999987643 4556668899999999999999999999
Q ss_pred EEEecChhhHH
Q 001400 386 IVYQGPRVSVL 396 (1085)
Q Consensus 386 iv~~G~~~~~~ 396 (1085)
+++.|+++++.
T Consensus 210 i~~~g~~~~~~ 220 (354)
T TIGR02142 210 VAAAGPIAEVW 220 (354)
T ss_pred EEEECCHHHHh
Confidence 99999988764
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-35 Score=316.14 Aligned_cols=207 Identities=21% Similarity=0.276 Sum_probs=167.7
Q ss_pred ecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCC-CceeeEEEECCccCCCCCC-CceEEEEccCCC--CCCCCC
Q 001400 150 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHH-LQVSGKITYNGHGFKEFVP-PRTSAYVSQQDW--QVAEMT 225 (1085)
Q Consensus 150 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~-~~~~G~i~~~G~~~~~~~~-~~~~~yv~Q~d~--~~~~lT 225 (1085)
+|+|+|+.|++|++++|+||||||||||+++|+|.++|. .+.+|+|.++|+++..... ++.++|++|++. +.+.+|
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t 80 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFT 80 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccC
Confidence 589999999999999999999999999999999998761 0139999999988754432 257999999974 556789
Q ss_pred HHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcc---cccccccCc
Q 001400 226 VRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDT---CADTLVGDE 302 (1085)
Q Consensus 226 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~---~~dt~vg~~ 302 (1085)
+.|++.+.....+... ......++++++.+||++ ..+.
T Consensus 81 ~~~~~~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~----- 121 (230)
T TIGR02770 81 MGNHAIETLRSLGKLS----------------------------------KQARALILEALEAVGLPDPEEVLKK----- 121 (230)
T ss_pred HHHHHHHHHHHcCccH----------------------------------HHHHHHHHHHHHHcCCCchHHHHhC-----
Confidence 9999977543211000 001224778899999973 3343
Q ss_pred ccccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEec
Q 001400 303 MLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLS 382 (1085)
Q Consensus 303 ~~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~ 382 (1085)
.+..|||||||||+||+||+.+|++|+|||||+|||..+...+.+.|+++++.. +++|+.++|..+++..++|++++|+
T Consensus 122 ~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~~~~~l~~~l~~~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~ 200 (230)
T TIGR02770 122 YPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQLF-GTGILLITHDLGVVARIADEVAVMD 200 (230)
T ss_pred ChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 345799999999999999999999999999999999999999999999987532 4566668888899999999999999
Q ss_pred CCeEEEecChhhHH
Q 001400 383 EGQIVYQGPRVSVL 396 (1085)
Q Consensus 383 ~G~iv~~G~~~~~~ 396 (1085)
+|+++..|+.+++.
T Consensus 201 ~G~i~~~~~~~~~~ 214 (230)
T TIGR02770 201 DGRIVERGTVKEIF 214 (230)
T ss_pred CCEEEEeCCHHHHH
Confidence 99999999987764
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-35 Score=316.78 Aligned_cols=201 Identities=26% Similarity=0.307 Sum_probs=165.7
Q ss_pred cccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCCCceEEEEccCCCCCCCCCHHHHH
Q 001400 151 LDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETL 230 (1085)
Q Consensus 151 L~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l 230 (1085)
|+|+|++|++|++++|+||||||||||+++|+|.++|. +|+|.++|.++..... ..+|++|++.+++.+||+||+
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~--~~~~v~q~~~l~~~~tv~e~l 75 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPT---SGGVILEGKQITEPGP--DRMVVFQNYSLLPWLTVRENI 75 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCCh--hheEEecCcccCCCCCHHHHH
Confidence 57999999999999999999999999999999998776 9999999988765322 248999999889999999999
Q ss_pred HHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCcccccCchh
Q 001400 231 DFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGG 310 (1085)
Q Consensus 231 ~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGG 310 (1085)
.+........ .+ . ......++++++.+||++..++.+ ..||||
T Consensus 76 ~~~~~~~~~~--~~------~------------------------~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG 118 (230)
T TIGR01184 76 ALAVDRVLPD--LS------K------------------------SERRAIVEEHIALVGLTEAADKRP-----GQLSGG 118 (230)
T ss_pred HHHHHhcccC--CC------H------------------------HHHHHHHHHHHHHcCCHHHHcCCh-----hhCCHH
Confidence 8753210000 00 0 001123677899999987777655 469999
Q ss_pred hhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEecCCeEEEec
Q 001400 311 QKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQG 390 (1085)
Q Consensus 311 qkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~~G~iv~~G 390 (1085)
|||||+||+||+.+|++++|||||+|||+.++..+.+.|+++++.. +.+|+.++|+.+++.+++|+|++|++|++++.|
T Consensus 119 ~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~-~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~~ 197 (230)
T TIGR01184 119 MKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEH-RVTVLMVTHDVDEALLLSDRVVMLTNGPAANIG 197 (230)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhcCEEEEEeCCcEeccc
Confidence 9999999999999999999999999999999999999999987643 445666888889999999999999999999988
Q ss_pred Chhh
Q 001400 391 PRVS 394 (1085)
Q Consensus 391 ~~~~ 394 (1085)
+..+
T Consensus 198 ~~~~ 201 (230)
T TIGR01184 198 QILE 201 (230)
T ss_pred Ccee
Confidence 6543
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-35 Score=353.04 Aligned_cols=210 Identities=27% Similarity=0.316 Sum_probs=174.0
Q ss_pred ccCCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCChh----cccceEEEEccCCCC
Q 001400 838 LEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE----TFARISGYCEQNDIH 913 (1085)
Q Consensus 838 ~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~----~~~~~~gy~~Q~~~~ 913 (1085)
.+++..+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.++|.++... ..++.+||++|++.+
T Consensus 14 ~~~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~ 91 (510)
T PRK09700 14 SFGPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHE--PTKGTITINNINYNKLDHKLAAQLGIGIIYQELSV 91 (510)
T ss_pred EcCCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcC--CCccEEEECCEECCCCCHHHHHHCCeEEEeecccc
Confidence 3455679999999999999999999999999999999999876 4689999999876421 123569999999988
Q ss_pred CCCCCHHHHHHHhhhhc----CCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCE
Q 001400 914 SPGLTVLESLLFSAWLR----LPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSI 989 (1085)
Q Consensus 914 ~~~~tv~e~l~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~i 989 (1085)
++.+||+||+.++.... ........+..+.++++++.+++.+..+..+ .+||||||||++|||||+.+|+|
T Consensus 92 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgG~~qrv~ia~al~~~p~l 166 (510)
T PRK09700 92 IDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKV-----ANLSISHKQMLEIAKTLMLDAKV 166 (510)
T ss_pred cCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccch-----hhCCHHHHHHHHHHHHHhcCCCE
Confidence 89999999998753211 0000112233456788999999987666543 57999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCCC
Q 001400 990 VFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGS 1056 (1085)
Q Consensus 990 lllDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~~ 1056 (1085)
|||||||+|||+.++..+++.|++++++|.|||++|||++ .+...||++++|++ |++++.|+..+
T Consensus 167 llLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~-~~~~~~d~v~~l~~-G~i~~~g~~~~ 231 (510)
T PRK09700 167 IIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLA-EIRRICDRYTVMKD-GSSVCSGMVSD 231 (510)
T ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEeeecchhh
Confidence 9999999999999999999999999878999999999986 46778999999985 78899887654
|
|
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-35 Score=359.91 Aligned_cols=209 Identities=22% Similarity=0.361 Sum_probs=166.2
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCC---CceEEEEccCCCCCCCC
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP---PRTSAYVSQQDWQVAEM 224 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 224 (1085)
.++|+|+|++|+||+.++|+||||||||||+++|+|.++|. +|+|.+||.++++... ++.++||+|++.+|+ .
T Consensus 356 ~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~-~ 431 (582)
T PRK11176 356 VPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDID---EGEILLDGHDLRDYTLASLRNQVALVSQNVHLFN-D 431 (582)
T ss_pred CccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCC---CceEEECCEEhhhcCHHHHHhhceEEccCceeec-c
Confidence 46999999999999999999999999999999999999886 9999999999876543 578999999998776 5
Q ss_pred CHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCccc
Q 001400 225 TVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEML 304 (1085)
Q Consensus 225 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 304 (1085)
|++|||.++..- ....+.+.+++ +... .++.+ -.|++..||.+|+. .
T Consensus 432 Ti~~Ni~~~~~~---~~~~~~i~~al------------------~~~~---------l~~~i--~~lp~Gldt~ig~~-g 478 (582)
T PRK11176 432 TIANNIAYARTE---QYSREQIEEAA------------------RMAY---------AMDFI--NKMDNGLDTVIGEN-G 478 (582)
T ss_pred hHHHHHhcCCCC---CCCHHHHHHHH------------------HHhC---------cHHHH--HhcccccCceeCCC-C
Confidence 999999875210 00011111110 0000 11112 12677889999975 4
Q ss_pred ccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEecCC
Q 001400 305 KGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEG 384 (1085)
Q Consensus 305 ~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~~G 384 (1085)
..||||||||++|||||+++|++|+||||||+||+.++..+.+.|+++.. ++|+|+ ++|.. +..+.||+|++|++|
T Consensus 479 ~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~~--~~tvI~-VtHr~-~~~~~~D~Ii~l~~g 554 (582)
T PRK11176 479 VLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK--NRTSLV-IAHRL-STIEKADEILVVEDG 554 (582)
T ss_pred CcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhC--CCEEEE-Eecch-HHHHhCCEEEEEECC
Confidence 67999999999999999999999999999999999999999999998743 445555 55655 566789999999999
Q ss_pred eEEEecChhhHHH
Q 001400 385 QIVYQGPRVSVLD 397 (1085)
Q Consensus 385 ~iv~~G~~~~~~~ 397 (1085)
+++..|+++++.+
T Consensus 555 ~i~e~g~~~~l~~ 567 (582)
T PRK11176 555 EIVERGTHAELLA 567 (582)
T ss_pred EEEEeCCHHHHHh
Confidence 9999999988864
|
|
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=328.24 Aligned_cols=208 Identities=23% Similarity=0.287 Sum_probs=166.4
Q ss_pred eEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCC---CeeeeEEEEcCccCCh-----hcccceEEEEccCCCC
Q 001400 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTG---GIIEGDIYISGYPKRQ-----ETFARISGYCEQNDIH 913 (1085)
Q Consensus 842 ~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~---~~~~G~i~i~g~~~~~-----~~~~~~~gy~~Q~~~~ 913 (1085)
..+|+||||+|++||++||+|+||||||||+++|+|.... .+.+|+|.++|.++.. ...++.++||+|++.+
T Consensus 95 ~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~~~ 174 (329)
T PRK14257 95 KHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTP 174 (329)
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhhhccEEEEecCCcc
Confidence 4699999999999999999999999999999999997531 2458999999998742 2456789999999988
Q ss_pred CCCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q 001400 914 SPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMD 993 (1085)
Q Consensus 914 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlD 993 (1085)
++ .|++||+.|+...... ...+...+.++++++.+++.+-.+..++. .+.+||||||||++|||||+.+|+||+||
T Consensus 175 ~~-~ti~eNi~~~~~~~~~--~~~~~~~~~~~~~l~~~~L~~~l~~~~~~-~~~~LSgGqkqRl~LARAl~~~p~IlLLD 250 (329)
T PRK14257 175 FE-MSIFDNVAYGPRNNGI--NDRKILEKIVEKSLKSAALWDEVKDDLDK-AGNALSGGQQQRLCIARAIALEPEVLLMD 250 (329)
T ss_pred CC-CcHHHHHHhHHHhcCC--ChHHHHHHHHHHHHHHcCCcchhhhhhhC-CcccCCHHHHHHHHHHHHHHhCCCEEEEe
Confidence 75 7999999986432111 11122234467788888874322222222 24579999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCCC
Q 001400 994 EPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGS 1056 (1085)
Q Consensus 994 EPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~~ 1056 (1085)
|||+|||+.+...+.+.|+++.+ ++|||++||+++ .+.+.||++++|++ |+++..|+..+
T Consensus 251 EPts~LD~~~~~~i~~~i~~l~~-~~Tii~iTH~l~-~i~~~~Driivl~~-G~i~e~g~~~~ 310 (329)
T PRK14257 251 EPTSALDPIATAKIEELILELKK-KYSIIIVTHSMA-QAQRISDETVFFYQ-GWIEEAGETKT 310 (329)
T ss_pred CCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCHHH
Confidence 99999999999999999999864 799999999986 36677999999985 79999987653
|
|
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-35 Score=322.22 Aligned_cols=205 Identities=21% Similarity=0.280 Sum_probs=164.3
Q ss_pred CCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCC--C-CeeeeEEEEcCccCCh-----hcccceEEEEccCC
Q 001400 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKT--G-GIIEGDIYISGYPKRQ-----ETFARISGYCEQND 911 (1085)
Q Consensus 840 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~--~-~~~~G~i~i~g~~~~~-----~~~~~~~gy~~Q~~ 911 (1085)
++..+|+|+||+|++||+++|+|+||||||||+++|+|... + .+.+|+|.++|.++.. ..+++.++|++|++
T Consensus 32 ~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~ 111 (268)
T PRK14248 32 GEKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVVNLRREIGMVFQKP 111 (268)
T ss_pred CCceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHHHHhccEEEEecCC
Confidence 34579999999999999999999999999999999999632 1 1468999999987642 23456799999998
Q ss_pred CCCCCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCc----ccccccCCCCCCCCCHHHHHHHHHHHHHhcCC
Q 001400 912 IHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTS----LSGALIGLPGINGLSTEQRKRLTIAVELVANP 987 (1085)
Q Consensus 912 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p 987 (1085)
.+++. |++||+.+...... .......++.+.++++.+++.. ..+. .+..||+|||||++|||||+.+|
T Consensus 112 ~~~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~~~~LSgGq~qrl~laral~~~p 183 (268)
T PRK14248 112 NPFPK-SIYNNITHALKYAG--ERRKSVLDEIVEESLTKAALWDEVKDRLHS-----SALSLSGGQQQRLCIARTLAMKP 183 (268)
T ss_pred ccCcc-cHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCCcchHHHHhc-----CcccCCHHHHHHHHHHHHHhCCC
Confidence 88875 99999987532211 1111223345677888887742 2222 23579999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCC
Q 001400 988 SIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1085)
Q Consensus 988 ~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~ 1055 (1085)
++|||||||+|||+.++..+.+.|+++.+ +.|||++||+++ ++.+.+|++++|++ |++++.|+..
T Consensus 184 ~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~~~~~~d~v~~l~~-G~i~~~~~~~ 248 (268)
T PRK14248 184 AVLLLDEPASALDPISNAKIEELITELKE-EYSIIIVTHNMQ-QALRVSDRTAFFLN-GDLVEYDQTE 248 (268)
T ss_pred CEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEEeCHH-HHHHhCCEEEEEEC-CEEEEeCCHH
Confidence 99999999999999999999999999854 789999999986 47788999999985 7899888753
|
|
| >cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-35 Score=310.20 Aligned_cols=187 Identities=27% Similarity=0.333 Sum_probs=159.9
Q ss_pred cCCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCCh--hcccceEEEEccCCCCCCC
Q 001400 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ--ETFARISGYCEQNDIHSPG 916 (1085)
Q Consensus 839 ~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~--~~~~~~~gy~~Q~~~~~~~ 916 (1085)
+++..+|+|+||+|++||++||+|+||||||||+++|+|..+ +.+|+|.++|.+... ..+++.++|++|++.+++.
T Consensus 10 ~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~ 87 (201)
T cd03231 10 RDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSP--PLAGRVLLNGGPLDFQRDSIARGLLYLGHAPGIKTT 87 (201)
T ss_pred eCCceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEecccccHHhhhheEEeccccccCCC
Confidence 345679999999999999999999999999999999999876 468999999987532 3456789999999988889
Q ss_pred CCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Q 001400 917 LTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPT 996 (1085)
Q Consensus 917 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEPt 996 (1085)
.|++||+.+.... . ..+.++++++.+++.+..+... ..||+|||||++|||||+.+|++|+|||||
T Consensus 88 ~tv~e~l~~~~~~------~---~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~laral~~~p~llllDEPt 153 (201)
T cd03231 88 LSVLENLRFWHAD------H---SDEQVEEALARVGLNGFEDRPV-----AQLSAGQQRRVALARLLLSGRPLWILDEPT 153 (201)
T ss_pred cCHHHHHHhhccc------c---cHHHHHHHHHHcCChhhhcCch-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 9999999874211 0 2345688899999987665543 579999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEE
Q 001400 997 SGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFM 1042 (1085)
Q Consensus 997 sgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l 1042 (1085)
+|||+.++..+++.|+++.++|+|+|++||++. +....+++++++
T Consensus 154 ~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~-~~~~~~~~~~~~ 198 (201)
T cd03231 154 TALDKAGVARFAEAMAGHCARGGMVVLTTHQDL-GLSEAGARELDL 198 (201)
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCEEEEEecCch-hhhhccceeEec
Confidence 999999999999999998777999999999976 577788998776
|
The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. |
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=323.38 Aligned_cols=208 Identities=26% Similarity=0.351 Sum_probs=169.7
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCC---CCceEEEEccCCC-CCCC
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV---PPRTSAYVSQQDW-QVAE 223 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~---~~~~~~yv~Q~d~-~~~~ 223 (1085)
+++|+|+|++|++|++++|+||||||||||+++|+|.++|....+|+|.++|.++.... .++.++|++|++. .++.
T Consensus 20 ~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~~~ig~v~q~~~~~~~~ 99 (282)
T PRK13640 20 KPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVG 99 (282)
T ss_pred ccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHHhheEEEEECHHHhhcc
Confidence 35999999999999999999999999999999999999875222399999999875432 2357999999974 5778
Q ss_pred CCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCcc
Q 001400 224 MTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEM 303 (1085)
Q Consensus 224 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 303 (1085)
+||+||+.|..+..+.. . .+...+++.+++.+||++..++.+
T Consensus 100 ~tv~enl~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~~L~~~~~~~~---- 141 (282)
T PRK13640 100 ATVGDDVAFGLENRAVP----------R------------------------PEMIKIVRDVLADVGMLDYIDSEP---- 141 (282)
T ss_pred CCHHHHHHhhHHhCCCC----------H------------------------HHHHHHHHHHHHHCCChhHhcCCc----
Confidence 99999998754322100 0 001224778899999987666554
Q ss_pred cccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEecC
Q 001400 304 LKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSE 383 (1085)
Q Consensus 304 ~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~~ 383 (1085)
+.|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++++.. +++|+.++|+.+++ ..+|++++|++
T Consensus 142 -~~LS~G~~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~-g~tvli~tH~~~~~-~~~d~i~~l~~ 218 (282)
T PRK13640 142 -ANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKN-NLTVISITHDIDEA-NMADQVLVLDD 218 (282)
T ss_pred -ccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEecCHHHH-HhCCEEEEEEC
Confidence 5799999999999999999999999999999999999999999999987543 44555577777777 57999999999
Q ss_pred CeEEEecChhhHH
Q 001400 384 GQIVYQGPRVSVL 396 (1085)
Q Consensus 384 G~iv~~G~~~~~~ 396 (1085)
|++++.|+++++.
T Consensus 219 G~i~~~g~~~~~~ 231 (282)
T PRK13640 219 GKLLAQGSPVEIF 231 (282)
T ss_pred CEEEEeCCHHHHh
Confidence 9999999988774
|
|
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=318.42 Aligned_cols=208 Identities=27% Similarity=0.366 Sum_probs=165.7
Q ss_pred CCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCC---CeeeeEEEEcCccCCh-----hcccceEEEEccCC
Q 001400 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTG---GIIEGDIYISGYPKRQ-----ETFARISGYCEQND 911 (1085)
Q Consensus 840 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~---~~~~G~i~i~g~~~~~-----~~~~~~~gy~~Q~~ 911 (1085)
++..+|+|+||+|++||+++|+|+||||||||+++|+|...+ .+.+|+|.++|.++.. ...++.++|++|++
T Consensus 14 ~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~~~~~i~~~~q~~ 93 (250)
T PRK14262 14 GEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKP 93 (250)
T ss_pred CCceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHHhhhhEEEEecCC
Confidence 345799999999999999999999999999999999997542 1258999999987532 23456799999998
Q ss_pred CCCCCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEE
Q 001400 912 IHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVF 991 (1085)
Q Consensus 912 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~ill 991 (1085)
.+++ .|++||+.+....... .......+.++++++.+++.+..+.... ..+.+||+|||||++|||||+.+|+||+
T Consensus 94 ~~~~-~tv~e~l~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~~LS~Gq~qr~~la~al~~~p~lll 169 (250)
T PRK14262 94 TPFP-MSIYDNVAFGPRIHGV--KSKHKLDRIVEESLKKAALWDEVKSELN-KPGTRLSGGQQQRLCIARALAVEPEVIL 169 (250)
T ss_pred ccCc-ccHHHHHHHHHHHcCC--CcHHHHHHHHHHHHHHcCCCchhHHHHh-CChhhcCHHHHHHHHHHHHHhCCCCEEE
Confidence 8877 8999999876432211 1122334456788888887532111111 1235799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCC
Q 001400 992 MDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1085)
Q Consensus 992 lDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~ 1054 (1085)
|||||+|||+.++..+++.|+++.+ ++|||++||+++ .+.+.+|++++|++ |+++..|+.
T Consensus 170 lDEP~~~LD~~~~~~l~~~l~~~~~-~~tili~sH~~~-~~~~~~d~i~~l~~-G~i~~~g~~ 229 (250)
T PRK14262 170 LDEPTSALDPIATQRIEKLLEELSE-NYTIVIVTHNIG-QAIRIADYIAFMYR-GELIEYGPT 229 (250)
T ss_pred EeCCccccCHHHHHHHHHHHHHHhc-CcEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEecCH
Confidence 9999999999999999999999864 799999999986 47788999999985 688888864
|
|
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-35 Score=318.98 Aligned_cols=203 Identities=26% Similarity=0.388 Sum_probs=166.7
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCC----CCceEEEEccCCCCCCC
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV----PPRTSAYVSQQDWQVAE 223 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~----~~~~~~yv~Q~d~~~~~ 223 (1085)
+.+|+|+|+.|++||+++|+|||||||||||++|+|.++|. +|+|.++|.++.... .++.++|++|++.+++.
T Consensus 18 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 94 (237)
T PRK11614 18 IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRAT---SGRIVFDGKDITDWQTAKIMREAVAIVPEGRRVFSR 94 (237)
T ss_pred ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC---CceEEECCEecCCCCHHHHHHhCEEEeccCcccCCC
Confidence 35999999999999999999999999999999999998876 999999998876543 23569999999988998
Q ss_pred CCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHh-CCcccccccccCc
Q 001400 224 MTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKIL-GLDTCADTLVGDE 302 (1085)
Q Consensus 224 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~l-gL~~~~dt~vg~~ 302 (1085)
+||+||+.++..... . + + ....++.+++.+ ++.+..++.
T Consensus 95 ~tv~~~l~~~~~~~~---~-~---~-----------------------------~~~~~~~~l~~~~~l~~~~~~~---- 134 (237)
T PRK11614 95 MTVEENLAMGGFFAE---R-D---Q-----------------------------FQERIKWVYELFPRLHERRIQR---- 134 (237)
T ss_pred CcHHHHHHHhhhccC---h-h---H-----------------------------HHHHHHHHHHHHHHHHHHHhCc----
Confidence 999999987532110 0 0 0 011244556666 465544443
Q ss_pred ccccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEec
Q 001400 303 MLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLS 382 (1085)
Q Consensus 303 ~~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~ 382 (1085)
...|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++++. + ++|+.++|+.+++.+++|++++|+
T Consensus 135 -~~~LS~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~-~-~tiii~sH~~~~~~~~~d~i~~l~ 211 (237)
T PRK11614 135 -AGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQ-G-MTIFLVEQNANQALKLADRGYVLE 211 (237)
T ss_pred -hhhCCHHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHC-C-CEEEEEeCcHHHHHhhCCEEEEEe
Confidence 3569999999999999999999999999999999999999999999998653 4 455557888899999999999999
Q ss_pred CCeEEEecChhhHH
Q 001400 383 EGQIVYQGPRVSVL 396 (1085)
Q Consensus 383 ~G~iv~~G~~~~~~ 396 (1085)
+|++++.|+.+++.
T Consensus 212 ~G~i~~~~~~~~~~ 225 (237)
T PRK11614 212 NGHVVLEDTGDALL 225 (237)
T ss_pred CCEEEeeCCHHHHh
Confidence 99999999987763
|
|
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-35 Score=321.96 Aligned_cols=207 Identities=23% Similarity=0.318 Sum_probs=170.4
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCC------CCceEEEEccCC--C
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV------PPRTSAYVSQQD--W 219 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~------~~~~~~yv~Q~d--~ 219 (1085)
+.+|+|+|++|++|++++|+|||||||||||++|+|.++|. +|+|.++|.++.... .++.++|++|++ .
T Consensus 24 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~ 100 (265)
T TIGR02769 24 APVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPA---QGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSA 100 (265)
T ss_pred eEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEccccCHHHHHHHhhceEEEecChhhh
Confidence 56999999999999999999999999999999999998876 999999998875432 235699999996 4
Q ss_pred CCCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCc-cccccc
Q 001400 220 QVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLD-TCADTL 298 (1085)
Q Consensus 220 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~ 298 (1085)
+++.+||+||+.+....... .. + ......++++++.+||. ...+..
T Consensus 101 ~~~~~tv~~~l~~~~~~~~~------------------~~--~-------------~~~~~~~~~~l~~~gl~~~~~~~~ 147 (265)
T TIGR02769 101 VNPRMTVRQIIGEPLRHLTS------------------LD--E-------------SEQKARIAELLDMVGLRSEDADKL 147 (265)
T ss_pred cCCCCCHHHHHHHHHHHhcC------------------CC--H-------------HHHHHHHHHHHHHcCCChhhhhCC
Confidence 56789999999765321100 00 0 00122467889999996 555554
Q ss_pred ccCcccccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeE
Q 001400 299 VGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDV 378 (1085)
Q Consensus 299 vg~~~~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i 378 (1085)
+ +.|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.+.. +++|+.++|+...+.+++|++
T Consensus 148 ~-----~~LSgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~-g~tiiivsH~~~~~~~~~d~i 221 (265)
T TIGR02769 148 P-----RQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAF-GTAYLFITHDLRLVQSFCQRV 221 (265)
T ss_pred h-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc-CcEEEEEeCCHHHHHHHhcEE
Confidence 4 5699999999999999999999999999999999999999999999987543 455666889999999999999
Q ss_pred EEecCCeEEEecChhhHH
Q 001400 379 ILLSEGQIVYQGPRVSVL 396 (1085)
Q Consensus 379 i~L~~G~iv~~G~~~~~~ 396 (1085)
++|++|++++.|+.+++.
T Consensus 222 ~~l~~G~i~~~g~~~~~~ 239 (265)
T TIGR02769 222 AVMDKGQIVEECDVAQLL 239 (265)
T ss_pred EEEeCCEEEEECCHHHHc
Confidence 999999999999988764
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-35 Score=318.10 Aligned_cols=211 Identities=24% Similarity=0.352 Sum_probs=171.8
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCC----CceEEEEccCCCCCCC
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP----PRTSAYVSQQDWQVAE 223 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 223 (1085)
+++|+|+|++|++|++++|+|||||||||||++|+|.++|. +|+|.++|.++..... ++.++|++|++.+++.
T Consensus 15 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 91 (242)
T TIGR03411 15 FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPD---EGSVLFGGTDLTGLPEHQIARAGIGRKFQKPTVFEN 91 (242)
T ss_pred eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CCeEEECCeecCCCCHHHHHhcCeeEeccccccCCC
Confidence 36999999999999999999999999999999999998876 9999999987754321 3469999999999999
Q ss_pred CCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCcc
Q 001400 224 MTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEM 303 (1085)
Q Consensus 224 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 303 (1085)
+||+||+.++..... ..+..... .. .......++++++.+||++..++.+
T Consensus 92 ~tv~~nl~~~~~~~~--~~~~~~~~----------~~--------------~~~~~~~~~~~l~~~~l~~~~~~~~---- 141 (242)
T TIGR03411 92 LTVFENLELALPRDK--SVFASLFF----------RL--------------SAEEKDRIEEVLETIGLADEADRLA---- 141 (242)
T ss_pred CCHHHHHHHhhhccc--cccccccc----------cc--------------HHHHHHHHHHHHHHcCCchhhcCCh----
Confidence 999999988543110 00000000 00 0001234788899999987766655
Q ss_pred cccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEecC
Q 001400 304 LKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSE 383 (1085)
Q Consensus 304 ~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~~ 383 (1085)
+.|||||||||+||+|++.+|++|+|||||+|||+.++..+.+.|+++.+ + .+|+.++|+.+++.++||+|++|++
T Consensus 142 -~~LS~Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~--~-~tii~~sH~~~~~~~~~d~i~~l~~ 217 (242)
T TIGR03411 142 -GLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG--K-HSVVVVEHDMEFVRSIADKVTVLHQ 217 (242)
T ss_pred -hhCCHHHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc--C-CEEEEEECCHHHHHHhCCEEEEEEC
Confidence 46999999999999999999999999999999999999999999999864 3 4566688889999999999999999
Q ss_pred CeEEEecChhhH
Q 001400 384 GQIVYQGPRVSV 395 (1085)
Q Consensus 384 G~iv~~G~~~~~ 395 (1085)
|++++.|+.+++
T Consensus 218 g~~~~~~~~~~~ 229 (242)
T TIGR03411 218 GSVLAEGSLDQV 229 (242)
T ss_pred CeEEeeCCHHHH
Confidence 999999987765
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-35 Score=358.54 Aligned_cols=209 Identities=28% Similarity=0.391 Sum_probs=170.6
Q ss_pred ceeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCC---CCceEEEEccCCCCCCC
Q 001400 147 KLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV---PPRTSAYVSQQDWQVAE 223 (1085)
Q Consensus 147 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~---~~~~~~yv~Q~d~~~~~ 223 (1085)
++++|+|+|+.++|||.++|+||||||||||++.|+|.+++. +|+|.+||.++++.. .++.++||+|++.+|.
T Consensus 341 ~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~---~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~- 416 (567)
T COG1132 341 KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPT---SGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFS- 416 (567)
T ss_pred CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCC---CCeEEECCEehhhcCHHHHHHhccEEcccceeec-
Confidence 346999999999999999999999999999999999999886 999999999988765 3588999999999887
Q ss_pred CCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCcc
Q 001400 224 MTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEM 303 (1085)
Q Consensus 224 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 303 (1085)
.||+|||.++..- ...+.+.++++.. ...+.+ ..|++++||.||++
T Consensus 417 ~TI~~NI~~g~~~----at~eei~~a~k~a---------------------------~~~d~I--~~lp~g~dt~vge~- 462 (567)
T COG1132 417 GTIRENIALGRPD----ATDEEIEEALKLA---------------------------NAHEFI--ANLPDGYDTIVGER- 462 (567)
T ss_pred ccHHHHHhcCCCC----CCHHHHHHHHHHh---------------------------ChHHHH--HhCcccccceecCC-
Confidence 7999999986321 0111122211110 012222 23577899999954
Q ss_pred cccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEecC
Q 001400 304 LKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSE 383 (1085)
Q Consensus 304 ~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~~ 383 (1085)
...||||||||++||||++.+|+||+||||||+||+.+...|.+.++++.+ ++|+++ +.|..+.+.+ +|+|++|++
T Consensus 463 G~~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~--~rT~ii-IaHRlsti~~-aD~IiVl~~ 538 (567)
T COG1132 463 GVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLK--GRTTLI-IAHRLSTIKN-ADRIIVLDN 538 (567)
T ss_pred CccCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHhc--CCEEEE-EeccHhHHHh-CCEEEEEEC
Confidence 457999999999999999999999999999999999999999999997753 457766 6676655555 999999999
Q ss_pred CeEEEecChhhHHH
Q 001400 384 GQIVYQGPRVSVLD 397 (1085)
Q Consensus 384 G~iv~~G~~~~~~~ 397 (1085)
|++++.|++++++.
T Consensus 539 G~i~e~G~h~eLl~ 552 (567)
T COG1132 539 GRIVERGTHEELLA 552 (567)
T ss_pred CEEEEecCHHHHHH
Confidence 99999999999875
|
|
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=319.38 Aligned_cols=205 Identities=26% Similarity=0.302 Sum_probs=165.2
Q ss_pred CCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCcc-----CCh---hc----ccceEEEE
Q 001400 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYP-----KRQ---ET----FARISGYC 907 (1085)
Q Consensus 840 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~-----~~~---~~----~~~~~gy~ 907 (1085)
++..+|+|+||+|++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.+ +.. .. .++.++|+
T Consensus 17 ~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~i~~~~~~~~~~~~~~~i~~v 94 (258)
T PRK11701 17 GPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLA--PDAGEVHYRMRDGQLRDLYALSEAERRRLLRTEWGFV 94 (258)
T ss_pred CCceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCccccccccccCCHHHHHHHhhcceEEE
Confidence 34579999999999999999999999999999999999866 468999999986 432 11 24569999
Q ss_pred ccCCC--CCCCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCc-ccccccCCCCCCCCCHHHHHHHHHHHHHh
Q 001400 908 EQNDI--HSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTS-LSGALIGLPGINGLSTEQRKRLTIAVELV 984 (1085)
Q Consensus 908 ~Q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~ 984 (1085)
+|++. +.+.+|+.||+.+....... .........+.++++.+++.+ ..+.. +..||+|||||++|||||+
T Consensus 95 ~q~~~~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LS~Gq~qrl~laral~ 167 (258)
T PRK11701 95 HQHPRDGLRMQVSAGGNIGERLMAVGA--RHYGDIRATAGDWLERVEIDAARIDDL-----PTTFSGGMQQRLQIARNLV 167 (258)
T ss_pred eeCcccccCccccHHHHHHHHHHHhcc--CcHHHHHHHHHHHHHHcCCChhHHhCC-----CccCCHHHHHHHHHHHHHh
Confidence 99974 56778999998764321111 111223455778899998863 33432 3579999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCC
Q 001400 985 ANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1085)
Q Consensus 985 ~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~ 1055 (1085)
.+|+||||||||+|||+.++..+++.|+++.++ |.|||++||+++ .+...+|++++|++ |++++.|+..
T Consensus 168 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~-~~~~~~d~i~~l~~-g~i~~~~~~~ 237 (258)
T PRK11701 168 THPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLA-VARLLAHRLLVMKQ-GRVVESGLTD 237 (258)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHhcCEEEEEEC-CEEEEeCCHH
Confidence 999999999999999999999999999998764 899999999986 46668999999985 7899888753
|
|
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-35 Score=320.43 Aligned_cols=206 Identities=29% Similarity=0.463 Sum_probs=170.8
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCC---CCceEEEEccCCCCCCCC
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV---PPRTSAYVSQQDWQVAEM 224 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~---~~~~~~yv~Q~d~~~~~l 224 (1085)
..+|+|+|++|++|++++|+|||||||||||++|+|.++|. +|+|.++|.++.... .++.++|++|++.+++.+
T Consensus 15 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 91 (258)
T PRK13548 15 RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPD---SGEVRLNGRPLADWSPAELARRRAVLPQHSSLSFPF 91 (258)
T ss_pred eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEEcccCCHHHhhhheEEEccCCcCCCCC
Confidence 35999999999999999999999999999999999998776 999999998765432 235689999998877889
Q ss_pred CHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCccc
Q 001400 225 TVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEML 304 (1085)
Q Consensus 225 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 304 (1085)
||+||+.+.....+. .. ......++++++.+||++..++.+
T Consensus 92 tv~e~l~~~~~~~~~--~~--------------------------------~~~~~~~~~~l~~~~l~~~~~~~~----- 132 (258)
T PRK13548 92 TVEEVVAMGRAPHGL--SR--------------------------------AEDDALVAAALAQVDLAHLAGRDY----- 132 (258)
T ss_pred CHHHHHHhhhcccCC--Cc--------------------------------HHHHHHHHHHHHHcCCHhHhcCCc-----
Confidence 999999875321110 00 001123677899999987666655
Q ss_pred ccCchhhhhHHHHHHHHh------CCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeE
Q 001400 305 KGISGGQKKRLTTGELLV------GPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDV 378 (1085)
Q Consensus 305 ~~LSGGqkqRvsia~al~------~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i 378 (1085)
..|||||||||+||+||+ .+|++|+|||||+|||+.++..+.+.|+++++.. +.+|+.++|+..++..++|+|
T Consensus 133 ~~LSgGe~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~-~~tiii~sH~~~~~~~~~d~i 211 (258)
T PRK13548 133 PQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHER-GLAVIVVLHDLNLAARYADRI 211 (258)
T ss_pred ccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEECCHHHHHHhcCEE
Confidence 469999999999999999 5999999999999999999999999999987333 445666788899999999999
Q ss_pred EEecCCeEEEecChhhHH
Q 001400 379 ILLSEGQIVYQGPRVSVL 396 (1085)
Q Consensus 379 i~L~~G~iv~~G~~~~~~ 396 (1085)
++|++|++++.|+.+++.
T Consensus 212 ~~l~~G~i~~~~~~~~~~ 229 (258)
T PRK13548 212 VLLHQGRLVADGTPAEVL 229 (258)
T ss_pred EEEECCEEEeeCCHHHHh
Confidence 999999999999887664
|
|
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-35 Score=313.36 Aligned_cols=197 Identities=26% Similarity=0.367 Sum_probs=167.6
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCCCceEEEEccCCCCCCCCCHH
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVR 227 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 227 (1085)
.++|+|+|+.+++|++++|+|||||||||||++|+|.++|. +|+|.++|+++.... .+.++|++|++.+++.+||+
T Consensus 13 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~~~~~~~~~-~~~~~~~~q~~~~~~~~t~~ 88 (223)
T TIGR03740 13 QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPT---SGEIIFDGHPWTRKD-LHKIGSLIESPPLYENLTAR 88 (223)
T ss_pred EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEeccccc-cccEEEEcCCCCccccCCHH
Confidence 46999999999999999999999999999999999998876 999999998765322 35799999999888889999
Q ss_pred HHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCcccccC
Q 001400 228 ETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGI 307 (1085)
Q Consensus 228 E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 307 (1085)
||+.+.....+. .+..+..+++.+||++..|..+ ..|
T Consensus 89 ~~~~~~~~~~~~--------------------------------------~~~~~~~~l~~~~l~~~~~~~~-----~~L 125 (223)
T TIGR03740 89 ENLKVHTTLLGL--------------------------------------PDSRIDEVLNIVDLTNTGKKKA-----KQF 125 (223)
T ss_pred HHHHHHHHHcCC--------------------------------------CHHHHHHHHHHcCCcHHHhhhH-----hhC
Confidence 999875432110 0113667888999987766554 469
Q ss_pred chhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEecCCeEE
Q 001400 308 SGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIV 387 (1085)
Q Consensus 308 SGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~~G~iv 387 (1085)
|||||||++||+|++.+|++++|||||+|||+.++..+.+.|+++++. +.+|+.++|+..++.+++|++++|++|+++
T Consensus 126 S~G~~~rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~--~~tiii~sH~~~~~~~~~d~i~~l~~g~i~ 203 (223)
T TIGR03740 126 SLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQ--GITVILSSHILSEVQQLADHIGIISEGVLG 203 (223)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHHC--CCEEEEEcCCHHHHHHhcCEEEEEeCCEEE
Confidence 999999999999999999999999999999999999999999998652 445666778888999999999999999999
Q ss_pred EecChh
Q 001400 388 YQGPRV 393 (1085)
Q Consensus 388 ~~G~~~ 393 (1085)
+.|+..
T Consensus 204 ~~~~~~ 209 (223)
T TIGR03740 204 YQGKIN 209 (223)
T ss_pred EecChh
Confidence 999764
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=353.19 Aligned_cols=208 Identities=28% Similarity=0.389 Sum_probs=173.2
Q ss_pred eeeeccceeeeeccccccccccccCCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccC
Q 001400 816 SMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPK 895 (1085)
Q Consensus 816 ~~~~~~~~y~v~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 895 (1085)
.+.++|++|.++. .+..+|+|+||+|+|||++||+|+||||||||+++|+|..+ +.+|+|.+||.++
T Consensus 451 ~I~~~nvsf~Y~~-----------~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~--p~~G~I~idg~~i 517 (686)
T TIGR03797 451 AIEVDRVTFRYRP-----------DGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFET--PESGSVFYDGQDL 517 (686)
T ss_pred eEEEEEEEEEcCC-----------CCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCEEc
Confidence 5778888777631 23569999999999999999999999999999999999877 5689999999987
Q ss_pred C---hhcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCccc-------ccccCCCC
Q 001400 896 R---QETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLS-------GALIGLPG 965 (1085)
Q Consensus 896 ~---~~~~~~~~gy~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~ 965 (1085)
+ ...+++.+|||+|++.++++ |++||+.++. + .+ ++.++++++..++.+.. +..++..
T Consensus 518 ~~~~~~~lr~~i~~v~Q~~~lf~g-TI~eNi~~~~----~--~~----~e~i~~al~~a~l~~~i~~lp~G~dt~ige~- 585 (686)
T TIGR03797 518 AGLDVQAVRRQLGVVLQNGRLMSG-SIFENIAGGA----P--LT----LDEAWEAARMAGLAEDIRAMPMGMHTVISEG- 585 (686)
T ss_pred CcCCHHHHHhccEEEccCCccCcc-cHHHHHhcCC----C--CC----HHHHHHHHHHcCcHHHHHhccccccccccCC-
Confidence 5 35678899999999998865 9999998752 1 11 23467788888776533 2333333
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEecC
Q 001400 966 INGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 1045 (1085)
Q Consensus 966 ~~~LS~Gqrqrl~iA~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~g 1045 (1085)
+.+||||||||++|||||+++|+||+||||||+||+.+++.+++.|+++ ++|+|++||+++ ..+.+|++++|++
T Consensus 586 G~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~---~~T~IiItHr~~--~i~~~D~Iivl~~- 659 (686)
T TIGR03797 586 GGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL---KVTRIVIAHRLS--TIRNADRIYVLDA- 659 (686)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh---CCeEEEEecChH--HHHcCCEEEEEEC-
Confidence 3579999999999999999999999999999999999999999999886 689999999975 5678999999985
Q ss_pred cEEEEecCC
Q 001400 1046 GELIYAGPL 1054 (1085)
Q Consensus 1046 G~~~~~g~~ 1054 (1085)
|+++..|+.
T Consensus 660 G~iv~~G~~ 668 (686)
T TIGR03797 660 GRVVQQGTY 668 (686)
T ss_pred CEEEEECCH
Confidence 799999984
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-34 Score=317.67 Aligned_cols=211 Identities=22% Similarity=0.275 Sum_probs=169.0
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCC--CceeeEEEECCccCCCC-----CCCceEEEEccCCCC
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHH--LQVSGKITYNGHGFKEF-----VPPRTSAYVSQQDWQ 220 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~--~~~~G~i~~~G~~~~~~-----~~~~~~~yv~Q~d~~ 220 (1085)
+++|+|+|+++++|++++|+|||||||||||++|+|.+++. .+.+|+|.++|.++... ..++.++|++|++.+
T Consensus 33 ~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~ 112 (267)
T PRK14237 33 KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVYEMRKHIGMVFQRPNP 112 (267)
T ss_pred eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCChHHHhcceEEEecCCcc
Confidence 35999999999999999999999999999999999998642 13599999999887532 124579999999887
Q ss_pred CCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCccccccccc
Q 001400 221 VAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVG 300 (1085)
Q Consensus 221 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 300 (1085)
++ .||+||+.++....+... + ......+.++++.+||..+.+...
T Consensus 113 ~~-~tv~eni~~~~~~~~~~~--~-------------------------------~~~~~~~~~~l~~~~l~~~i~~~~- 157 (267)
T PRK14237 113 FA-KSIYENITFALERAGVKD--K-------------------------------KVLDEIVETSLKQAALWDQVKDDL- 157 (267)
T ss_pred cc-ccHHHHHHhHHHhcCCCC--H-------------------------------HHHHHHHHHHHHHcCCCchhhhhh-
Confidence 77 699999988643211100 0 001123667788888864322222
Q ss_pred CcccccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEE
Q 001400 301 DEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVIL 380 (1085)
Q Consensus 301 ~~~~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~ 380 (1085)
+..++.||||||||++|||||+.+|++++|||||+|||+.++..+.+.|+++.+ + ++|+.++|+.+++.++||++++
T Consensus 158 ~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~-~tiii~tH~~~~~~~~~d~i~~ 234 (267)
T PRK14237 158 HKSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKK--N-YTIIIVTHNMQQAARASDYTAF 234 (267)
T ss_pred cCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc--C-CEEEEEecCHHHHHHhcCEEEE
Confidence 245568999999999999999999999999999999999999999999998853 3 5566678888899999999999
Q ss_pred ecCCeEEEecChhhHH
Q 001400 381 LSEGQIVYQGPRVSVL 396 (1085)
Q Consensus 381 L~~G~iv~~G~~~~~~ 396 (1085)
|++|++++.|+.+++.
T Consensus 235 l~~G~i~~~g~~~~~~ 250 (267)
T PRK14237 235 FYLGDLIEYDKTRNIF 250 (267)
T ss_pred EECCEEEEeCCHHHHh
Confidence 9999999999988763
|
|
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-35 Score=314.73 Aligned_cols=196 Identities=22% Similarity=0.322 Sum_probs=164.1
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCC------CCceEEEEccCCCCC
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV------PPRTSAYVSQQDWQV 221 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~------~~~~~~yv~Q~d~~~ 221 (1085)
+.+|+|+|+.|++|++++|+||||||||||+++|+|.++++ +|+|.++|.++.... .++.++|++|++.++
T Consensus 15 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~i~~~~~~~~~~~~~~i~~~~q~~~~~ 91 (222)
T PRK10908 15 RQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPS---AGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLL 91 (222)
T ss_pred CeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEcccCChhHHHHHHhheEEEecCcccc
Confidence 36999999999999999999999999999999999998776 999999998875432 235799999999888
Q ss_pred CCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccC
Q 001400 222 AEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGD 301 (1085)
Q Consensus 222 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 301 (1085)
+.+||+||+.+.....+... .+....++.+++.+||.+..++.+
T Consensus 92 ~~~tv~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-- 135 (222)
T PRK10908 92 MDRTVYDNVAIPLIIAGASG----------------------------------DDIRRRVSAALDKVGLLDKAKNFP-- 135 (222)
T ss_pred ccccHHHHHHhHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCChhhhhCCc--
Confidence 89999999988643321100 000123667888999987666544
Q ss_pred cccccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEe
Q 001400 302 EMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILL 381 (1085)
Q Consensus 302 ~~~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L 381 (1085)
..|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++.+. +++++.++|+.+++..++|+|++|
T Consensus 136 ---~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~--~~tiii~sH~~~~~~~~~d~i~~l 210 (222)
T PRK10908 136 ---IQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRV--GVTVLMATHDIGLISRRSYRMLTL 210 (222)
T ss_pred ---hhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHhCCEEEEE
Confidence 469999999999999999999999999999999999999999999998653 456666889999999999999999
Q ss_pred cCCeEE
Q 001400 382 SEGQIV 387 (1085)
Q Consensus 382 ~~G~iv 387 (1085)
++|+++
T Consensus 211 ~~G~i~ 216 (222)
T PRK10908 211 SDGHLH 216 (222)
T ss_pred ECCEEc
Confidence 999985
|
|
| >PRK13543 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-35 Score=311.72 Aligned_cols=190 Identities=24% Similarity=0.310 Sum_probs=162.2
Q ss_pred CCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCChhcccceEEEEccCCCCCCCCCH
Q 001400 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTV 919 (1085)
Q Consensus 840 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gy~~Q~~~~~~~~tv 919 (1085)
++..+++++||++++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.++.....++.++|++|++.+++.+|+
T Consensus 22 ~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~i~~~~~~~~i~~~~q~~~~~~~~t~ 99 (214)
T PRK13543 22 NEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLH--VESGQIQIDGKTATRGDRSRFMAYLGHLPGLKADLST 99 (214)
T ss_pred CCceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCC--CCCeeEEECCEEccchhhhhceEEeecCcccccCCcH
Confidence 34569999999999999999999999999999999999876 4689999999876543345679999999988888999
Q ss_pred HHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCC
Q 001400 920 LESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGL 999 (1085)
Q Consensus 920 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEPtsgL 999 (1085)
+||+.+....+. . ...+.++++++.+++.+..+... ..||+|||||++|||+++.+|++|+|||||+||
T Consensus 100 ~e~l~~~~~~~~---~---~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEPt~~L 168 (214)
T PRK13543 100 LENLHFLCGLHG---R---RAKQMPGSALAIVGLAGYEDTLV-----RQLSAGQKKRLALARLWLSPAPLWLLDEPYANL 168 (214)
T ss_pred HHHHHHHHHhcC---C---cHHHHHHHHHHHcCChhhccCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence 999987643321 1 12234678888899876665543 579999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEe
Q 001400 1000 DARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMK 1043 (1085)
Q Consensus 1000 D~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~ 1043 (1085)
|+.+++.+++.++++.++|.|||++||+++ ++.+.+|+++++.
T Consensus 169 D~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~~~i~~l~ 211 (214)
T PRK13543 169 DLEGITLVNRMISAHLRGGGAALVTTHGAY-AAPPVRTRMLTLE 211 (214)
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEecChh-hhhhhcceEEEEe
Confidence 999999999999998878999999999987 5788999999885
|
|
| >cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=311.75 Aligned_cols=200 Identities=24% Similarity=0.336 Sum_probs=162.9
Q ss_pred ccccccccCCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCChhcccceEEEEccCC
Q 001400 832 LKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQND 911 (1085)
Q Consensus 832 ~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gy~~Q~~ 911 (1085)
+.+..+.++++.+|+|+||+|++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.+... ..+..
T Consensus 25 ~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~~---------~~~~~ 93 (224)
T cd03220 25 ILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYP--PDSGTVTVRGRVSSL---------LGLGG 93 (224)
T ss_pred hhhhhhhcCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEchh---------hcccc
Confidence 4455556777889999999999999999999999999999999999866 568999999976421 11123
Q ss_pred CCCCCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEE
Q 001400 912 IHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVF 991 (1085)
Q Consensus 912 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~ill 991 (1085)
.+.+.+||+||+.+....+. ......++.++++++.+++.+..+..+ .+||+|||||++|||+|+.+|++||
T Consensus 94 ~~~~~~tv~enl~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~laral~~~p~lll 165 (224)
T cd03220 94 GFNPELTGRENIYLNGRLLG---LSRKEIDEKIDEIIEFSELGDFIDLPV-----KTYSSGMKARLAFAIATALEPDILL 165 (224)
T ss_pred cCCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 34567899999987653321 122333456778889999877666543 5799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEecCcEEEEec
Q 001400 992 MDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAG 1052 (1085)
Q Consensus 992 lDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g 1052 (1085)
|||||+|||+.++..+++.|+++.++|.|||++||+++ ++.+.+|++++|++ |++++.|
T Consensus 166 lDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~g 224 (224)
T cd03220 166 IDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPS-SIKRLCDRALVLEK-GKIRFDG 224 (224)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEecC
Confidence 99999999999999999999998777899999999986 46678999999985 6887654
|
Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2. |
| >cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-35 Score=301.35 Aligned_cols=159 Identities=29% Similarity=0.447 Sum_probs=142.9
Q ss_pred CCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCCh--hcccceEEEEccCCCCCCCC
Q 001400 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ--ETFARISGYCEQNDIHSPGL 917 (1085)
Q Consensus 840 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~--~~~~~~~gy~~Q~~~~~~~~ 917 (1085)
++..+|+|+||++++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.+... ..+++.++|++|++.+++..
T Consensus 11 ~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~ 88 (173)
T cd03230 11 GKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLK--PDSGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENL 88 (173)
T ss_pred CCeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEcccchHhhhccEEEEecCCccccCC
Confidence 34569999999999999999999999999999999999866 468999999987543 24456799999999888888
Q ss_pred CHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCC
Q 001400 918 TVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTS 997 (1085)
Q Consensus 918 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEPts 997 (1085)
|+.||+. ||+|||||++|||||+.+|++|+|||||+
T Consensus 89 tv~~~~~--------------------------------------------LS~G~~qrv~laral~~~p~illlDEPt~ 124 (173)
T cd03230 89 TVRENLK--------------------------------------------LSGGMKQRLALAQALLHDPELLILDEPTS 124 (173)
T ss_pred cHHHHhh--------------------------------------------cCHHHHHHHHHHHHHHcCCCEEEEeCCcc
Confidence 9999873 89999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEecC
Q 001400 998 GLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 1045 (1085)
Q Consensus 998 gLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~g 1045 (1085)
|||+.++..+.+.|+++.++|.|||++||+++ .+.+.+|++++|++|
T Consensus 125 ~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~-~~~~~~d~i~~l~~g 171 (173)
T cd03230 125 GLDPESRREFWELLRELKKEGKTILLSSHILE-EAERLCDRVAILNNG 171 (173)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhCCEEEEEeCC
Confidence 99999999999999999877899999999986 466789999999865
|
In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=322.35 Aligned_cols=201 Identities=26% Similarity=0.314 Sum_probs=168.5
Q ss_pred eEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCCh---hcccceEEEEccCCC-CCCCC
Q 001400 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFARISGYCEQNDI-HSPGL 917 (1085)
Q Consensus 842 ~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gy~~Q~~~-~~~~~ 917 (1085)
..+|+||||+|++||++||+|+||||||||+++|+|... +.+|+|.++|.++.. ...++.+||++|++. .++..
T Consensus 20 ~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~ 97 (277)
T PRK13642 20 VNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFE--EFEGKVKIDGELLTAENVWNLRRKIGMVFQNPDNQFVGA 97 (277)
T ss_pred CeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCCEEEECCEECCcCCHHHHhcceEEEEECHHHhhccC
Confidence 359999999999999999999999999999999999876 568999999987643 235678999999974 56778
Q ss_pred CHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCC
Q 001400 918 TVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTS 997 (1085)
Q Consensus 918 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEPts 997 (1085)
||.||+.++.... ........+.++++++.+++.+..+.. +..||+|||||++|||||+.+|+||||||||+
T Consensus 98 tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~lAraL~~~p~llllDEPt~ 169 (277)
T PRK13642 98 TVEDDVAFGMENQ---GIPREEMIKRVDEALLAVNMLDFKTRE-----PARLSGGQKQRVAVAGIIALRPEIIILDESTS 169 (277)
T ss_pred CHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHhHhhCC-----cccCCHHHHHHHHHHHHHHcCCCEEEEeCCcc
Confidence 9999998764322 112233345678899999997766553 35799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHC-CceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCC
Q 001400 998 GLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1085)
Q Consensus 998 gLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~ 1055 (1085)
|||+.++..+++.|++++++ |.|||++||+++. + ..+|++++|++ |+++..|+..
T Consensus 170 ~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~-~-~~~d~i~~l~~-G~i~~~g~~~ 225 (277)
T PRK13642 170 MLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDE-A-ASSDRILVMKA-GEIIKEAAPS 225 (277)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-H-HhCCEEEEEEC-CEEEEeCCHH
Confidence 99999999999999999765 9999999999863 4 46999999985 6888888754
|
|
| >PRK13538 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-35 Score=309.89 Aligned_cols=190 Identities=23% Similarity=0.309 Sum_probs=158.1
Q ss_pred cCCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCCh--hcccceEEEEccCCCCCCC
Q 001400 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ--ETFARISGYCEQNDIHSPG 916 (1085)
Q Consensus 839 ~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~--~~~~~~~gy~~Q~~~~~~~ 916 (1085)
+++..+|+|+||+|++||++||+|+||||||||+++|+|..+ +.+|+|.++|.+... ..+++.++|++|++.+++.
T Consensus 11 ~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--p~~G~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (204)
T PRK13538 11 RDERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLAR--PDAGEVLWQGEPIRRQRDEYHQDLLYLGHQPGIKTE 88 (204)
T ss_pred ECCEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEcccchHHhhhheEEeCCccccCcC
Confidence 345679999999999999999999999999999999999876 468999999987542 2345679999999988888
Q ss_pred CCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Q 001400 917 LTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPT 996 (1085)
Q Consensus 917 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEPt 996 (1085)
+|+.||+.+....+. . ...+.++++++.+++.+..+.. +..||+|||||++|||||+.+|++|+|||||
T Consensus 89 ~tv~e~l~~~~~~~~---~---~~~~~~~~~l~~~gl~~~~~~~-----~~~LS~G~~qrl~la~al~~~p~llllDEPt 157 (204)
T PRK13538 89 LTALENLRFYQRLHG---P---GDDEALWEALAQVGLAGFEDVP-----VRQLSAGQQRRVALARLWLTRAPLWILDEPF 157 (204)
T ss_pred CcHHHHHHHHHHhcC---c---cHHHHHHHHHHHcCCHHHhhCC-----hhhcCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 999999987643221 1 1234578899999997666554 3579999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEE
Q 001400 997 SGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFM 1042 (1085)
Q Consensus 997 sgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l 1042 (1085)
+|||+.++..+++.|+++.++|.|||++||+++ .+....+|++++
T Consensus 158 ~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~-~i~~~~~~~~~~ 202 (204)
T PRK13538 158 TAIDKQGVARLEALLAQHAEQGGMVILTTHQDL-PVASDKVRKLRL 202 (204)
T ss_pred ccCCHHHHHHHHHHHHHHHHCCCEEEEEecChh-hhccCCceEEec
Confidence 999999999999999998777899999999986 354444566554
|
|
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-34 Score=315.20 Aligned_cols=212 Identities=19% Similarity=0.275 Sum_probs=169.0
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCC---CCceEEEEccCCCCCCCC
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV---PPRTSAYVSQQDWQVAEM 224 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~---~~~~~~yv~Q~d~~~~~l 224 (1085)
+.+|+|+|+++++|++++|+||||||||||+++|+|.+++..+.+|+|+++|+++.+.. .++.++|++|++.+++ .
T Consensus 15 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~l~~-~ 93 (246)
T PRK14269 15 KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPNVFV-K 93 (246)
T ss_pred EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhhEEEEecCCcccc-c
Confidence 36999999999999999999999999999999999987532245999999999876432 2457999999988777 6
Q ss_pred CHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCccc
Q 001400 225 TVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEML 304 (1085)
Q Consensus 225 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 304 (1085)
||+||+.++....+.... . .....+++.+++.+||........ ++..
T Consensus 94 tv~eni~~~~~~~~~~~~-------------------~-------------~~~~~~~~~~l~~~~l~~~~~~~~-~~~~ 140 (246)
T PRK14269 94 SIYENISYAPKLHGMIKN-------------------K-------------DEEEALVVDCLQKVGLFEEVKDKL-KQNA 140 (246)
T ss_pred cHHHHhhhHHhhcCcccC-------------------h-------------HHHHHHHHHHHHHcCCChhhhHHh-cCCc
Confidence 999999886433211000 0 001123677888999853211111 2345
Q ss_pred ccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEecCC
Q 001400 305 KGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEG 384 (1085)
Q Consensus 305 ~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~~G 384 (1085)
+.|||||||||+|||||+.+|++++|||||+|||+.++..+.+.|+++.+ + ++++.++|+.+++.+++|++++|++|
T Consensus 141 ~~LS~G~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~--~-~tiii~tH~~~~~~~~~d~i~~l~~G 217 (246)
T PRK14269 141 LALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSH--N-LSMIMVTHNMQQGKRVADYTAFFHLG 217 (246)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC--C-CEEEEEecCHHHHHhhCcEEEEEECC
Confidence 67999999999999999999999999999999999999999999998753 3 55666888999999999999999999
Q ss_pred eEEEecChhhHH
Q 001400 385 QIVYQGPRVSVL 396 (1085)
Q Consensus 385 ~iv~~G~~~~~~ 396 (1085)
++++.|+.+++.
T Consensus 218 ~i~~~g~~~~~~ 229 (246)
T PRK14269 218 ELIEFGESKEFF 229 (246)
T ss_pred EEEEECCHHHHH
Confidence 999999987763
|
|
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-35 Score=311.08 Aligned_cols=195 Identities=24% Similarity=0.333 Sum_probs=163.5
Q ss_pred cceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCC-CCceEEEEccCCCCCCCCCHHHHHH
Q 001400 153 DLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV-PPRTSAYVSQQDWQVAEMTVRETLD 231 (1085)
Q Consensus 153 ~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~-~~~~~~yv~Q~d~~~~~lTV~E~l~ 231 (1085)
|+|+.|++|++++|+|||||||||||++|+|.++|. +|+|.++|.++.... .++.++|++|++.+++.+||+||+.
T Consensus 16 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~ 92 (211)
T cd03298 16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQ---SGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVG 92 (211)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcCcCCHhHccEEEEecccccCCCCcHHHHHh
Confidence 999999999999999999999999999999998876 999999998875432 2357999999999899999999998
Q ss_pred HhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCcccccCchhh
Q 001400 232 FAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQ 311 (1085)
Q Consensus 232 f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGq 311 (1085)
++..... .. . ...+..++++++.+||++..++.+ ..|||||
T Consensus 93 ~~~~~~~-~~--~-------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~ 133 (211)
T cd03298 93 LGLSPGL-KL--T-------------------------------AEDRQAIEVALARVGLAGLEKRLP-----GELSGGE 133 (211)
T ss_pred ccccccc-Cc--c-------------------------------HHHHHHHHHHHHHcCCHHHHhCCc-----ccCCHHH
Confidence 7532110 00 0 001224778899999987777654 4699999
Q ss_pred hhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEecCCeEEEec
Q 001400 312 KKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQG 390 (1085)
Q Consensus 312 kqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~~G~iv~~G 390 (1085)
|||++||+||+.+|++++|||||+|||..++..+.+.|+++++.. +.+|+.++|+..++.+++|++++|++|++++.|
T Consensus 134 ~qrv~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~-~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 134 RQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAET-KMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEecCHHHHHhhhCEEEEEECCEEeecC
Confidence 999999999999999999999999999999999999999987533 455666889999999999999999999998764
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-34 Score=318.98 Aligned_cols=206 Identities=23% Similarity=0.316 Sum_probs=171.5
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCC----------------CCceE
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV----------------PPRTS 211 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~----------------~~~~~ 211 (1085)
.++|+|+|++|++|++++|+||||||||||+++|+|.++|. +|+|.++|.++.... .++.+
T Consensus 13 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~i 89 (252)
T TIGR03005 13 LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPID---EGQIQVEGEQLYHMPGRNGPLVPADEKHLRQMRNKI 89 (252)
T ss_pred eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccccccccccccchhHHHHHhhCe
Confidence 36999999999999999999999999999999999998876 999999998774321 24579
Q ss_pred EEEccCCCCCCCCCHHHHHHHhhhh-cCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhC
Q 001400 212 AYVSQQDWQVAEMTVRETLDFAGQC-QGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILG 290 (1085)
Q Consensus 212 ~yv~Q~d~~~~~lTV~E~l~f~~~~-~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lg 290 (1085)
+|++|++.+++.+||.||+.++... .+.. .. .....++++++.+|
T Consensus 90 ~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~--------------------~~--------------~~~~~~~~~l~~~g 135 (252)
T TIGR03005 90 GMVFQSFNLFPHKTVLDNVTEAPVLVLGMA--------------------RA--------------EAEKRAMELLDMVG 135 (252)
T ss_pred EEEecCcccCCCCcHHHHHHHHHHHhcCCC--------------------HH--------------HHHHHHHHHHHHcC
Confidence 9999999889999999999875321 0000 00 00123677889999
Q ss_pred CcccccccccCcccccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhH
Q 001400 291 LDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPE 370 (1085)
Q Consensus 291 L~~~~dt~vg~~~~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~ 370 (1085)
|++..+..+ ..||||||||++||+||+.+|++++|||||+|||+.++..+.+.|+++.+.. +++++.++|+.++
T Consensus 136 l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~-~~tiiivsH~~~~ 209 (252)
T TIGR03005 136 LADKADHMP-----AQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEH-DLTMLLVTHEMGF 209 (252)
T ss_pred ChhHhhcCh-----hhcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc-CcEEEEEeCCHHH
Confidence 987666543 5699999999999999999999999999999999999999999999987643 4566668888899
Q ss_pred HHhhcCeEEEecCCeEEEecChhhHH
Q 001400 371 AYELFDDVILLSEGQIVYQGPRVSVL 396 (1085)
Q Consensus 371 ~~~~~D~ii~L~~G~iv~~G~~~~~~ 396 (1085)
+..++|++++|++|++++.|+.+++.
T Consensus 210 ~~~~~d~i~~l~~G~i~~~g~~~~~~ 235 (252)
T TIGR03005 210 AREFADRVCFFDKGRIVEQGKPDEIF 235 (252)
T ss_pred HHHhcCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999999987663
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-35 Score=332.34 Aligned_cols=211 Identities=23% Similarity=0.382 Sum_probs=168.9
Q ss_pred cceeeeccceeeeeccccccccccccCCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCc
Q 001400 814 PLSMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGY 893 (1085)
Q Consensus 814 ~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~ 893 (1085)
+-++.|+|+.+++. +++++|+++||+|++||++||+|+|||||||++++|.+... .+|+|.|||+
T Consensus 349 ~~~I~F~dV~f~y~------------~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d---~sG~I~IdG~ 413 (591)
T KOG0057|consen 349 GGSIEFDDVHFSYG------------PKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD---YSGSILIDGQ 413 (591)
T ss_pred CCcEEEEeeEEEeC------------CCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc---cCCcEEECCe
Confidence 34578888877662 34569999999999999999999999999999999999765 4799999999
Q ss_pred cCC---hhcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCccc-------ccccCC
Q 001400 894 PKR---QETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLS-------GALIGL 963 (1085)
Q Consensus 894 ~~~---~~~~~~~~gy~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~ 963 (1085)
++. .+..|+.||||||+..++. -||.+|+.|+.. +... +.+-++.+..++.+.- ...+|.
T Consensus 414 dik~~~~~SlR~~Ig~VPQd~~LFn-dTIl~NI~YGn~-----sas~----eeV~e~~k~a~~hd~i~~l~~GY~T~VGe 483 (591)
T KOG0057|consen 414 DIKEVSLESLRQSIGVVPQDSVLFN-DTILYNIKYGNP-----SASD----EEVVEACKRAGLHDVISRLPDGYQTLVGE 483 (591)
T ss_pred eHhhhChHHhhhheeEeCCcccccc-hhHHHHhhcCCC-----CcCH----HHHHHHHHHcCcHHHHHhccccchhhHhh
Confidence 864 4668899999999887774 599999998731 2222 2233444444443321 222333
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEe
Q 001400 964 PGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMK 1043 (1085)
Q Consensus 964 ~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~ 1043 (1085)
.| ..|||||||||+||||++.+|+|+++|||||+||.++.+.+++.+.+. ..|+|+|+|.|+. ++.+.||+|++|+
T Consensus 484 rG-~~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~-~~~rTvI~IvH~l--~ll~~~DkI~~l~ 559 (591)
T KOG0057|consen 484 RG-LMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDV-MSGRTVIMIVHRL--DLLKDFDKIIVLD 559 (591)
T ss_pred cc-cccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHh-cCCCeEEEEEecc--hhHhcCCEEEEEE
Confidence 33 459999999999999999999999999999999999999999999994 4699999999996 4788999999998
Q ss_pred cCcEEEEecCC
Q 001400 1044 RGGELIYAGPL 1054 (1085)
Q Consensus 1044 ~gG~~~~~g~~ 1054 (1085)
+ |++...|+-
T Consensus 560 n-G~v~e~gth 569 (591)
T KOG0057|consen 560 N-GTVKEYGTH 569 (591)
T ss_pred C-CeeEEeccH
Confidence 6 678877764
|
|
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-35 Score=312.18 Aligned_cols=194 Identities=31% Similarity=0.447 Sum_probs=160.6
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCC---CCceEEEEccCCC-CCCC
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV---PPRTSAYVSQQDW-QVAE 223 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~---~~~~~~yv~Q~d~-~~~~ 223 (1085)
+++|+|+|+++++|++++|+|||||||||||++|+|.++++ +|+|.++|.++.... .++.++|++|++. .++.
T Consensus 14 ~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 90 (211)
T cd03225 14 RPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPT---SGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFG 90 (211)
T ss_pred eeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEcccCCHHHHHhhceEEecChhhhcCC
Confidence 46999999999999999999999999999999999998876 999999998775432 2357899999974 4677
Q ss_pred CCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCcc
Q 001400 224 MTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEM 303 (1085)
Q Consensus 224 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 303 (1085)
+||+||+.++....+... ......++++++.+||++..++.+
T Consensus 91 ~t~~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~---- 132 (211)
T cd03225 91 PTVEEEVAFGLENLGLPE----------------------------------EEIEERVEEALELVGLEGLRDRSP---- 132 (211)
T ss_pred CcHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCcHhhhcCCc----
Confidence 899999987543211000 000123677889999987666554
Q ss_pred cccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEecC
Q 001400 304 LKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSE 383 (1085)
Q Consensus 304 ~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~~ 383 (1085)
..|||||||||+|||||+.+|++++|||||+|||+.++..+.+.|+++++. +++|+.++|+.+++..++|+|++|++
T Consensus 133 -~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~--~~tvi~~sH~~~~~~~~~d~i~~l~~ 209 (211)
T cd03225 133 -FTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAE--GKTIIIVTHDLDLLLELADRVIVLED 209 (211)
T ss_pred -ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHhCCEEEEEeC
Confidence 469999999999999999999999999999999999999999999998763 45666688889999999999999999
Q ss_pred Ce
Q 001400 384 GQ 385 (1085)
Q Consensus 384 G~ 385 (1085)
|+
T Consensus 210 G~ 211 (211)
T cd03225 210 GK 211 (211)
T ss_pred CC
Confidence 85
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=317.20 Aligned_cols=213 Identities=24% Similarity=0.308 Sum_probs=170.0
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCC--CceeeEEEECCccCCCCC---CCceEEEEccCCCCCC
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHH--LQVSGKITYNGHGFKEFV---PPRTSAYVSQQDWQVA 222 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~--~~~~G~i~~~G~~~~~~~---~~~~~~yv~Q~d~~~~ 222 (1085)
..+|+|+|++|++|++++|+||||||||||+++|+|.+++. .+.+|+|.++|.++.... .++.++|++|++.+++
T Consensus 16 ~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~ 95 (250)
T PRK14247 16 VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIP 95 (250)
T ss_pred eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhccEEEEeccCccCC
Confidence 35999999999999999999999999999999999998642 135999999998875432 2467999999998889
Q ss_pred CCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCc
Q 001400 223 EMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDE 302 (1085)
Q Consensus 223 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 302 (1085)
.+||+||+.++.+....... . .+....++++++.+||.+..+... +.
T Consensus 96 ~~tv~enl~~~~~~~~~~~~------------------~--------------~~~~~~~~~~l~~~~l~~~~~~~~-~~ 142 (250)
T PRK14247 96 NLSIFENVALGLKLNRLVKS------------------K--------------KELQERVRWALEKAQLWDEVKDRL-DA 142 (250)
T ss_pred CCcHHHHHHHHHHhccccCC------------------H--------------HHHHHHHHHHHHHcCCCcchhhhh-cC
Confidence 99999999886432210000 0 001123677888899854211111 23
Q ss_pred ccccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEec
Q 001400 303 MLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLS 382 (1085)
Q Consensus 303 ~~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~ 382 (1085)
.+..|||||||||+|||||+.+|++++|||||+|||+.++..+.+.|+++.+ + ++++.++|+.+++.+++|++++|+
T Consensus 143 ~~~~LSgG~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~--~-~tiii~sH~~~~~~~~~d~i~~l~ 219 (250)
T PRK14247 143 PAGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKK--D-MTIVLVTHFPQQAARISDYVAFLY 219 (250)
T ss_pred CcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc--C-CEEEEEeCCHHHHHHhcCEEEEEE
Confidence 3457999999999999999999999999999999999999999999999853 3 556668888889999999999999
Q ss_pred CCeEEEecChhhHH
Q 001400 383 EGQIVYQGPRVSVL 396 (1085)
Q Consensus 383 ~G~iv~~G~~~~~~ 396 (1085)
+|++++.|+.+++.
T Consensus 220 ~G~i~~~g~~~~~~ 233 (250)
T PRK14247 220 KGQIVEWGPTREVF 233 (250)
T ss_pred CCeEEEECCHHHHH
Confidence 99999999987763
|
|
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=322.73 Aligned_cols=205 Identities=21% Similarity=0.299 Sum_probs=167.0
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCC-------CCceEEEEccCCC-
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV-------PPRTSAYVSQQDW- 219 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~-------~~~~~~yv~Q~d~- 219 (1085)
+++|+|+|++|++|++++|+|||||||||||++|+|.++|. +|+|.++|.++.... .++.++|++|++.
T Consensus 20 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~i~~~~q~~~~ 96 (280)
T PRK13649 20 GRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPT---QGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPES 96 (280)
T ss_pred cceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccccccCHHHHHhheEEEeeChhh
Confidence 35999999999999999999999999999999999998876 999999998875421 2356999999962
Q ss_pred CCCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcc-ccccc
Q 001400 220 QVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDT-CADTL 298 (1085)
Q Consensus 220 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~-~~dt~ 298 (1085)
.+...||+||+.|.....+... .+....++++++.+||.. ..+..
T Consensus 97 ~~~~~tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~ 142 (280)
T PRK13649 97 QLFEETVLKDVAFGPQNFGVSQ----------------------------------EEAEALAREKLALVGISESLFEKN 142 (280)
T ss_pred hhccccHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCChhhhhCC
Confidence 2334799999987543221100 000123677888999963 44544
Q ss_pred ccCcccccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeE
Q 001400 299 VGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDV 378 (1085)
Q Consensus 299 vg~~~~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i 378 (1085)
++.|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++++. +++|+.++|+.+++.+++|++
T Consensus 143 -----~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~--~~tiiivsH~~~~~~~~~d~i 215 (280)
T PRK13649 143 -----PFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQS--GMTIVLVTHLMDDVANYADFV 215 (280)
T ss_pred -----cccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHC--CCEEEEEeccHHHHHHhCCEE
Confidence 4569999999999999999999999999999999999999999999998653 455666788888999999999
Q ss_pred EEecCCeEEEecChhhHH
Q 001400 379 ILLSEGQIVYQGPRVSVL 396 (1085)
Q Consensus 379 i~L~~G~iv~~G~~~~~~ 396 (1085)
++|++|++++.|+.+++.
T Consensus 216 ~~l~~G~i~~~g~~~~~~ 233 (280)
T PRK13649 216 YVLEKGKLVLSGKPKDIF 233 (280)
T ss_pred EEEECCEEEEeCCHHHHh
Confidence 999999999999988764
|
|
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=318.29 Aligned_cols=202 Identities=22% Similarity=0.255 Sum_probs=164.2
Q ss_pred eEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCC--CeeeeEEEEcCccCChhcc-cceEEEEccCCC--CCCC
Q 001400 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTG--GIIEGDIYISGYPKRQETF-ARISGYCEQNDI--HSPG 916 (1085)
Q Consensus 842 ~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~--~~~~G~i~i~g~~~~~~~~-~~~~gy~~Q~~~--~~~~ 916 (1085)
..+|+|+||+|++||+++|+|+||||||||+++|+|..++ .+.+|+|.++|.++..... ++.++|++|++. +.+.
T Consensus 16 ~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~i~~v~q~~~~~~~~~ 95 (254)
T PRK10418 16 QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRKIATIMQNPRSAFNPL 95 (254)
T ss_pred cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccccceEEEEecCCccccCcc
Confidence 3589999999999999999999999999999999998652 1168999999987653322 357999999974 4466
Q ss_pred CCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcc---cccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q 001400 917 LTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSL---SGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMD 993 (1085)
Q Consensus 917 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~---~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlD 993 (1085)
.|+.+++.+.+..... .. ..+.++++++.+++.+. .+.. +..||+|||||++|||||+.+|+|||||
T Consensus 96 ~~~~~~~~~~~~~~~~---~~--~~~~~~~~l~~~~l~~~~~~~~~~-----~~~LS~Gq~qrv~laral~~~p~lLlLD 165 (254)
T PRK10418 96 HTMHTHARETCLALGK---PA--DDATLTAALEAVGLENAARVLKLY-----PFEMSGGMLQRMMIALALLCEAPFIIAD 165 (254)
T ss_pred ccHHHHHHHHHHHcCC---Ch--HHHHHHHHHHHcCCCChhhhhhcC-----CcccCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 7999988664322211 11 22457889999998752 2332 3579999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHC-CceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCC
Q 001400 994 EPTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1085)
Q Consensus 994 EPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~ 1055 (1085)
|||+|||+.++..+.+.|++++++ |.|||++||+++ ++.+.+|++++|++ |+++..|+..
T Consensus 166 EPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~-~~~~~~d~v~~l~~-G~i~~~~~~~ 226 (254)
T PRK10418 166 EPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMG-VVARLADDVAVMSH-GRIVEQGDVE 226 (254)
T ss_pred CCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEecCHH
Confidence 999999999999999999998764 899999999986 46678999999985 7899888754
|
|
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=318.45 Aligned_cols=221 Identities=19% Similarity=0.256 Sum_probs=172.9
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCC----CceEEEEccCCCCCCC
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP----PRTSAYVSQQDWQVAE 223 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 223 (1085)
.++|+|+|+++++|++++|+||||||||||+++|+|.++|. +|+|.++|.++..... +..++|++|++.+++.
T Consensus 18 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 94 (255)
T PRK11300 18 LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPT---GGTILLRGQHIEGLPGHQIARMGVVRTFQHVRLFRE 94 (255)
T ss_pred EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCC---cceEEECCEECCCCCHHHHHhcCeEEeccCcccCCC
Confidence 46999999999999999999999999999999999998876 9999999988754321 2358999999999999
Q ss_pred CCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCcc
Q 001400 224 MTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEM 303 (1085)
Q Consensus 224 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 303 (1085)
+||+||+.++....... +........ ....+ . ..+....++.+++.+||++..++.+
T Consensus 95 ~tv~enl~~~~~~~~~~---~~~~~~~~~---~~~~~--~-----------~~~~~~~~~~~l~~~gl~~~~~~~~---- 151 (255)
T PRK11300 95 MTVIENLLVAQHQQLKT---GLFSGLLKT---PAFRR--A-----------ESEALDRAATWLERVGLLEHANRQA---- 151 (255)
T ss_pred CcHHHHHHHhhhccccc---hhhhhhccc---ccccc--c-----------hhHHHHHHHHHHHhCChhhhhhCCh----
Confidence 99999999864311000 000000000 00000 0 0011234677889999987666554
Q ss_pred cccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEecC
Q 001400 304 LKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSE 383 (1085)
Q Consensus 304 ~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~~ 383 (1085)
+.|||||||||+||+||+.+|++|+|||||+|||..++..+.+.|+++++.. +++|+.++|+.+++.+++|++++|++
T Consensus 152 -~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~-~~tii~~sH~~~~~~~~~d~i~~l~~ 229 (255)
T PRK11300 152 -GNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEH-NVTVLLIEHDMKLVMGISDRIYVVNQ 229 (255)
T ss_pred -hhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhc-CCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 4699999999999999999999999999999999999999999999987533 45666688899999999999999999
Q ss_pred CeEEEecChhhHH
Q 001400 384 GQIVYQGPRVSVL 396 (1085)
Q Consensus 384 G~iv~~G~~~~~~ 396 (1085)
|++++.|+.+++.
T Consensus 230 g~i~~~~~~~~~~ 242 (255)
T PRK11300 230 GTPLANGTPEEIR 242 (255)
T ss_pred CeEEecCCHHHHh
Confidence 9999999987653
|
|
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=319.67 Aligned_cols=205 Identities=20% Similarity=0.295 Sum_probs=166.7
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCC--CceeeEEEECCccCCCC-----CCCceEEEEccCCCC
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHH--LQVSGKITYNGHGFKEF-----VPPRTSAYVSQQDWQ 220 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~--~~~~G~i~~~G~~~~~~-----~~~~~~~yv~Q~d~~ 220 (1085)
+.+|+|+|++|++|++++|+|||||||||||++|+|.+++. .+.+|+|.++|.++... ..++.++|++|++.+
T Consensus 25 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~ 104 (258)
T PRK14268 25 KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPNP 104 (258)
T ss_pred eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHHHHhhhEEEEecCCcc
Confidence 35999999999999999999999999999999999988641 12499999999876432 124579999999887
Q ss_pred CCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCc----cccc
Q 001400 221 VAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLD----TCAD 296 (1085)
Q Consensus 221 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~----~~~d 296 (1085)
++ +||+||+.|..+..+... + .....++++++.+|+. +..+
T Consensus 105 ~~-~tv~enl~~~~~~~~~~~--~--------------------------------~~~~~~~~~l~~~~l~~~~~~~~~ 149 (258)
T PRK14268 105 FP-MSIYDNVAYGPRIHGANK--K--------------------------------DLDGVVENALRSAALWDETSDRLK 149 (258)
T ss_pred Cc-ccHHHHHHHHHHHcCCCH--H--------------------------------HHHHHHHHHHHHcCCCcchhhhhc
Confidence 77 899999988643221100 0 0012367788888884 2334
Q ss_pred ccccCcccccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcC
Q 001400 297 TLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFD 376 (1085)
Q Consensus 297 t~vg~~~~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D 376 (1085)
+ .+..|||||||||+|||||+.+|++++|||||+|||+.++..+.+.|+++.+ + ++|+.++|+.+++.+++|
T Consensus 150 ~-----~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~--~-~tiiivsH~~~~~~~~~d 221 (258)
T PRK14268 150 S-----PALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKK--D-YTIVIVTHNMQQAARISD 221 (258)
T ss_pred C-----ChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhh--C-CEEEEEECCHHHHHHhCC
Confidence 3 3457999999999999999999999999999999999999999999998853 3 566668889999999999
Q ss_pred eEEEecCCeEEEecChhhH
Q 001400 377 DVILLSEGQIVYQGPRVSV 395 (1085)
Q Consensus 377 ~ii~L~~G~iv~~G~~~~~ 395 (1085)
+|++|++|++++.|+.+++
T Consensus 222 ~i~~l~~G~i~~~~~~~~~ 240 (258)
T PRK14268 222 YTGFFLMGELIEFGQTRQI 240 (258)
T ss_pred EEEEEECCEEEEeCCHHHH
Confidence 9999999999999998776
|
|
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-35 Score=323.60 Aligned_cols=205 Identities=23% Similarity=0.331 Sum_probs=169.8
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCC----CCceEEEEccCCC-CCC
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV----PPRTSAYVSQQDW-QVA 222 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~----~~~~~~yv~Q~d~-~~~ 222 (1085)
+.+|+|+|++|++|++++|+||||||||||+++|+|.++++ +|+|.++|.++.... .++.++|++|++. .+.
T Consensus 23 ~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~i~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~ 99 (280)
T PRK13633 23 KLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPS---EGKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIV 99 (280)
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEeccccccHHHHhhheEEEecChhhhhc
Confidence 46999999999999999999999999999999999999876 999999999875421 2467999999974 234
Q ss_pred CCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCc
Q 001400 223 EMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDE 302 (1085)
Q Consensus 223 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 302 (1085)
..||.|++.|+....+... ......++++++.+||+...++.+
T Consensus 100 ~~~v~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gL~~~~~~~~--- 142 (280)
T PRK13633 100 ATIVEEDVAFGPENLGIPP----------------------------------EEIRERVDESLKKVGMYEYRRHAP--- 142 (280)
T ss_pred cccHHHHHHhhHhhcCCCH----------------------------------HHHHHHHHHHHHHCCCHhHhhCCc---
Confidence 5699999988643221100 001224788999999988777765
Q ss_pred ccccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEec
Q 001400 303 MLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLS 382 (1085)
Q Consensus 303 ~~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~ 382 (1085)
..|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++++.. +++|+.++|+..++.. +|++++|+
T Consensus 143 --~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~-g~tillvtH~~~~~~~-~d~v~~l~ 218 (280)
T PRK13633 143 --HLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKY-GITIILITHYMEEAVE-ADRIIVMD 218 (280)
T ss_pred --ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEecChHHHhc-CCEEEEEE
Confidence 4699999999999999999999999999999999999999999999987543 4555557788888765 99999999
Q ss_pred CCeEEEecChhhHH
Q 001400 383 EGQIVYQGPRVSVL 396 (1085)
Q Consensus 383 ~G~iv~~G~~~~~~ 396 (1085)
+|++++.|+.+++.
T Consensus 219 ~G~i~~~g~~~~~~ 232 (280)
T PRK13633 219 SGKVVMEGTPKEIF 232 (280)
T ss_pred CCEEEEecCHHHHh
Confidence 99999999988875
|
|
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-34 Score=321.91 Aligned_cols=208 Identities=23% Similarity=0.328 Sum_probs=164.7
Q ss_pred CCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCC--C-CeeeeEEEEcCccCCh-----hcccceEEEEccCC
Q 001400 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKT--G-GIIEGDIYISGYPKRQ-----ETFARISGYCEQND 911 (1085)
Q Consensus 840 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~--~-~~~~G~i~i~g~~~~~-----~~~~~~~gy~~Q~~ 911 (1085)
++..+|+|+||+|++||+++|+|+||||||||+++|+|... + .+.+|+|.++|.++.. ..+++.+||++|++
T Consensus 50 ~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~ 129 (286)
T PRK14275 50 GEFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIGMVFQKP 129 (286)
T ss_pred CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccchHHhhhcEEEECCCC
Confidence 44569999999999999999999999999999999999632 1 1258999999987532 13456799999999
Q ss_pred CCCCCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCc-ccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEE
Q 001400 912 IHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTS-LSGALIGLPGINGLSTEQRKRLTIAVELVANPSIV 990 (1085)
Q Consensus 912 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~il 990 (1085)
.+++. |++||+.+....+... ......+.+.++++.+++.. +.+... ..+..||||||||++|||||+.+|++|
T Consensus 130 ~l~~~-tv~enl~~~~~~~~~~--~~~~~~~~~~~~l~~~~l~~~l~~~~~--~~~~~LSgGq~qrv~LAraL~~~p~ll 204 (286)
T PRK14275 130 NPFPK-SIFDNIAYGPRLHGIN--DKKQLEEIVEKSLRKAALWDEVSDRLD--KNALGLSGGQQQRLCVARTLAVEPEIL 204 (286)
T ss_pred CCCcc-CHHHHHHhHHHhcCCC--cHHHHHHHHHHHHHHhCCccchhhHhh--CChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 88775 9999998864322111 12223455677888887742 111111 123579999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCC
Q 001400 991 FMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1085)
Q Consensus 991 llDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~ 1055 (1085)
||||||+|||+.++..+.+.|+++.+ +.|||++||+++ .+.+.+|++++|++ |+++..|+..
T Consensus 205 lLDEPt~gLD~~~~~~l~~~L~~~~~-~~tvIivsH~~~-~~~~~~d~i~~L~~-G~i~~~g~~~ 266 (286)
T PRK14275 205 LLDEPTSALDPKATAKIEDLIQELRG-SYTIMIVTHNMQ-QASRVSDYTMFFYE-GVLVEHAPTA 266 (286)
T ss_pred EEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCHH
Confidence 99999999999999999999999864 689999999986 46778999999985 7898888753
|
|
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-34 Score=316.91 Aligned_cols=210 Identities=20% Similarity=0.252 Sum_probs=166.3
Q ss_pred eecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhC--CCCceeeEEEECCccCCCC-----CCCceEEEEccCCCCC
Q 001400 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLG--HHLQVSGKITYNGHGFKEF-----VPPRTSAYVSQQDWQV 221 (1085)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~--~~~~~~G~i~~~G~~~~~~-----~~~~~~~yv~Q~d~~~ 221 (1085)
++|+|+|+.|++|++++|+||||||||||+++|+|.++ |..+.+|+|.++|.++... ..++.++|++|++.++
T Consensus 27 ~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 106 (260)
T PRK10744 27 HALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIALLRAKVGMVFQKPTPF 106 (260)
T ss_pred EEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccchHHHhcceEEEecCCccC
Confidence 59999999999999999999999999999999999986 2223589999999887421 1246799999998877
Q ss_pred CCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccC
Q 001400 222 AEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGD 301 (1085)
Q Consensus 222 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 301 (1085)
+ +||+||+.+.......... . ....+++++++.+||........ +
T Consensus 107 ~-~tv~~nl~~~~~~~~~~~~-------------------~--------------~~~~~~~~~l~~~~l~~~~~~~~-~ 151 (260)
T PRK10744 107 P-MSIYDNIAFGVRLFEKLSR-------------------A--------------EMDERVEWALTKAALWNEVKDKL-H 151 (260)
T ss_pred c-CcHHHHHhhhHhhcCCCCH-------------------H--------------HHHHHHHHHHHHcCCChhhHHHH-h
Confidence 7 8999999876432110000 0 00123677888888743111111 1
Q ss_pred cccccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEe
Q 001400 302 EMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILL 381 (1085)
Q Consensus 302 ~~~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L 381 (1085)
.....|||||||||+||+||+.+|++|+|||||+|||..++..+.+.|+++.+ + ++|+.++|+..++.+++|++++|
T Consensus 152 ~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~--~-~tiii~sH~~~~~~~~~d~i~~l 228 (260)
T PRK10744 152 QSGYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQ--D-YTVVIVTHNMQQAARCSDYTAFM 228 (260)
T ss_pred cCCCCCCHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc--C-CeEEEEeCCHHHHHHhCCEEEEE
Confidence 33457999999999999999999999999999999999999999999999853 3 45666888888999999999999
Q ss_pred cCCeEEEecChhhHH
Q 001400 382 SEGQIVYQGPRVSVL 396 (1085)
Q Consensus 382 ~~G~iv~~G~~~~~~ 396 (1085)
++|+++..|+.+++.
T Consensus 229 ~~G~i~~~g~~~~~~ 243 (260)
T PRK10744 229 YLGELIEFGNTDTIF 243 (260)
T ss_pred ECCEEEEeCCHHHHH
Confidence 999999999987764
|
|
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-35 Score=314.52 Aligned_cols=198 Identities=22% Similarity=0.336 Sum_probs=160.1
Q ss_pred CCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCCh---hcccceEEEEccCCCCCCC
Q 001400 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFARISGYCEQNDIHSPG 916 (1085)
Q Consensus 840 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gy~~Q~~~~~~~ 916 (1085)
++..+++|+||+|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.. ..+++.++|++|++.+++
T Consensus 18 ~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~- 94 (225)
T PRK10247 18 GDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLIS--PTSGTLLFEGEDISTLKPEIYRQQVSYCAQTPTLFG- 94 (225)
T ss_pred CCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccC--CCCCeEEECCEEcCcCCHHHHHhccEEEeccccccc-
Confidence 44579999999999999999999999999999999999765 568999999986532 234567999999988876
Q ss_pred CCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCC-cccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCC
Q 001400 917 LTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELT-SLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEP 995 (1085)
Q Consensus 917 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEP 995 (1085)
.|++||+.+....+.. . .....++++++.+++. ...+.. +..||+|||||++|||||+.+|++|+||||
T Consensus 95 ~tv~enl~~~~~~~~~---~--~~~~~~~~~l~~~~l~~~~~~~~-----~~~LS~G~~qrv~laral~~~p~llllDEP 164 (225)
T PRK10247 95 DTVYDNLIFPWQIRNQ---Q--PDPAIFLDDLERFALPDTILTKN-----IAELSGGEKQRISLIRNLQFMPKVLLLDEI 164 (225)
T ss_pred ccHHHHHHhHHhhcCC---C--hHHHHHHHHHHHcCCChHHhcCC-----cccCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 4999999875433211 1 1123467889999985 344443 357999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHH-CCceEEEEecCccHHHHHhcCEEEEEecCcEEEEec
Q 001400 996 TSGLDARAAAIVMRTVRNIVN-TGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAG 1052 (1085)
Q Consensus 996 tsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g 1052 (1085)
|+|||+.++..+.+.|+++.+ .|.|||++||+++. + +.+|++++|.+.+..+..|
T Consensus 165 t~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~-~-~~~d~i~~l~~~~~~~~~~ 220 (225)
T PRK10247 165 TSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDE-I-NHADKVITLQPHAGEMQEA 220 (225)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHH-H-HhCCEEEEEecccchHhhh
Confidence 999999999999999999875 48999999999863 4 5699999995333334333
|
|
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=357.08 Aligned_cols=206 Identities=22% Similarity=0.309 Sum_probs=165.9
Q ss_pred eecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCC---CceEEEEccCCCCCCCCC
Q 001400 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP---PRTSAYVSQQDWQVAEMT 225 (1085)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~lT 225 (1085)
++|+|+|++++|||.++|+|+||||||||+++|+|+++|. +|+|.+||.++++..+ ++.++||+|++.+|+. |
T Consensus 355 ~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~---~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~-T 430 (592)
T PRK10790 355 LVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLT---EGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLAD-T 430 (592)
T ss_pred ceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCC---CceEEECCEEhhhCCHHHHHhheEEEccCCccccc-h
Confidence 5999999999999999999999999999999999999887 9999999999876543 5789999999998875 9
Q ss_pred HHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCcccc
Q 001400 226 VRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLK 305 (1085)
Q Consensus 226 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 305 (1085)
++|||.++.. ...+.+.+++ +... .++.++ .|++..||.+|+. ..
T Consensus 431 i~~NI~~~~~-----~~d~~i~~a~------------------~~~g---------l~~~i~--~lp~Gldt~i~e~-g~ 475 (592)
T PRK10790 431 FLANVTLGRD-----ISEEQVWQAL------------------ETVQ---------LAELAR--SLPDGLYTPLGEQ-GN 475 (592)
T ss_pred HHHHHHhCCC-----CCHHHHHHHH------------------HHcC---------cHHHHH--hccccccccccCC-CC
Confidence 9999988521 0001111111 1000 111222 2567789999974 45
Q ss_pred cCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEecCCe
Q 001400 306 GISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQ 385 (1085)
Q Consensus 306 ~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~~G~ 385 (1085)
+||||||||++|||||+.+|+|++||||||+||+.++..|.+.|+++.. ++|+|+ ++|.. +....||+|++|++|+
T Consensus 476 ~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~--~~tvIi-vtHr~-~~l~~~D~ii~l~~G~ 551 (592)
T PRK10790 476 NLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVRE--HTTLVV-IAHRL-STIVEADTILVLHRGQ 551 (592)
T ss_pred CCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhC--CCEEEE-Eecch-HHHHhCCEEEEEECCE
Confidence 7999999999999999999999999999999999999999999998753 456555 55554 4566799999999999
Q ss_pred EEEecChhhHHH
Q 001400 386 IVYQGPRVSVLD 397 (1085)
Q Consensus 386 iv~~G~~~~~~~ 397 (1085)
++..|+++++.+
T Consensus 552 i~~~G~~~~L~~ 563 (592)
T PRK10790 552 AVEQGTHQQLLA 563 (592)
T ss_pred EEEEcCHHHHHh
Confidence 999999999864
|
|
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-34 Score=320.45 Aligned_cols=204 Identities=28% Similarity=0.377 Sum_probs=169.4
Q ss_pred eecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCC-----CCceEEEEccCCC-CCC
Q 001400 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV-----PPRTSAYVSQQDW-QVA 222 (1085)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~-----~~~~~~yv~Q~d~-~~~ 222 (1085)
.+|+|+|++|++||+++|+||||||||||+++|+|.+++. +|+|+++|.++.... .++.++|++|++. .+.
T Consensus 16 ~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 92 (275)
T PRK13639 16 EALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPT---SGEVLIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLF 92 (275)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ccEEEECCEECccccchHHHHHhheEEEeeChhhhhc
Confidence 5999999999999999999999999999999999998876 999999998874211 2457999999963 344
Q ss_pred CCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCc
Q 001400 223 EMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDE 302 (1085)
Q Consensus 223 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 302 (1085)
.+||.||+.|+....+. .+ . .....+.++++.+||.+..++.+
T Consensus 93 ~~tv~e~i~~~~~~~~~-~~---------~------------------------~~~~~~~~~l~~~~L~~~~~~~~--- 135 (275)
T PRK13639 93 APTVEEDVAFGPLNLGL-SK---------E------------------------EVEKRVKEALKAVGMEGFENKPP--- 135 (275)
T ss_pred cccHHHHHHHHHHHcCC-CH---------H------------------------HHHHHHHHHHHHCCCchhhcCCh---
Confidence 57999999875321110 00 0 01123677899999988777665
Q ss_pred ccccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEec
Q 001400 303 MLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLS 382 (1085)
Q Consensus 303 ~~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~ 382 (1085)
+.||||||||++||+||+.+|++++|||||+|||+.++.++.+.|+++++. +++|+.++|+.+++.++||++++|+
T Consensus 136 --~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~--~~til~vtH~~~~~~~~~d~i~~l~ 211 (275)
T PRK13639 136 --HHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKE--GITIIISTHDVDLVPVYADKVYVMS 211 (275)
T ss_pred --hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHC--CCEEEEEecCHHHHHHhCCEEEEEE
Confidence 469999999999999999999999999999999999999999999998753 4556668899999999999999999
Q ss_pred CCeEEEecChhhHH
Q 001400 383 EGQIVYQGPRVSVL 396 (1085)
Q Consensus 383 ~G~iv~~G~~~~~~ 396 (1085)
+|++++.|+++++.
T Consensus 212 ~G~i~~~g~~~~~~ 225 (275)
T PRK13639 212 DGKIIKEGTPKEVF 225 (275)
T ss_pred CCEEEEeCCHHHHh
Confidence 99999999988774
|
|
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=320.78 Aligned_cols=205 Identities=26% Similarity=0.343 Sum_probs=168.7
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCC-----CCCceEEEEccCCC-CC
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEF-----VPPRTSAYVSQQDW-QV 221 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~-----~~~~~~~yv~Q~d~-~~ 221 (1085)
+.+|+|+|++|++|++++|+|||||||||||++|+|.++|. +|+|.++|.++... ..++.++|++|++. .+
T Consensus 14 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~ 90 (271)
T PRK13638 14 EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQ---KGAVLWQGKPLDYSKRGLLALRQQVATVFQDPEQQI 90 (271)
T ss_pred cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC---ccEEEECCEEcccccCCHHHHHhheEEEeeChhhcc
Confidence 35999999999999999999999999999999999999876 99999999987421 12357999999975 34
Q ss_pred CCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccC
Q 001400 222 AEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGD 301 (1085)
Q Consensus 222 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 301 (1085)
...|+.||+.+.....+... . +....++.+++.+||.+..++.+
T Consensus 91 ~~~~~~~~l~~~~~~~~~~~--------------------~--------------~~~~~~~~~l~~~~l~~~~~~~~-- 134 (271)
T PRK13638 91 FYTDIDSDIAFSLRNLGVPE--------------------A--------------EITRRVDEALTLVDAQHFRHQPI-- 134 (271)
T ss_pred ccccHHHHHHHHHHHcCCCH--------------------H--------------HHHHHHHHHHHHcCCHhHhcCCc--
Confidence 55689999987543221100 0 00123677889999987776654
Q ss_pred cccccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEe
Q 001400 302 EMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILL 381 (1085)
Q Consensus 302 ~~~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L 381 (1085)
..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++.. +++|+.++|+..++.+++|++++|
T Consensus 135 ---~~LSgG~~qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~--g~tii~vtH~~~~~~~~~d~i~~l 209 (271)
T PRK13638 135 ---QCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQ--GNHVIISSHDIDLIYEISDAVYVL 209 (271)
T ss_pred ---hhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHhCCEEEEE
Confidence 469999999999999999999999999999999999999999999998753 445666889999999999999999
Q ss_pred cCCeEEEecChhhHH
Q 001400 382 SEGQIVYQGPRVSVL 396 (1085)
Q Consensus 382 ~~G~iv~~G~~~~~~ 396 (1085)
++|++++.|+.+++.
T Consensus 210 ~~G~i~~~g~~~~~~ 224 (271)
T PRK13638 210 RQGQILTHGAPGEVF 224 (271)
T ss_pred ECCEEEEeCCHHHHh
Confidence 999999999987764
|
|
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-34 Score=316.61 Aligned_cols=209 Identities=25% Similarity=0.278 Sum_probs=165.6
Q ss_pred CCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCC---eeeeEEEEcCccCCh-----hcccceEEEEccCC
Q 001400 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGG---IIEGDIYISGYPKRQ-----ETFARISGYCEQND 911 (1085)
Q Consensus 840 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~---~~~G~i~i~g~~~~~-----~~~~~~~gy~~Q~~ 911 (1085)
++..+|+|+||+|++||+++|+|+||||||||+++|+|..... +.+|+|.++|.++.. ...++.++|++|++
T Consensus 17 ~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~ 96 (253)
T PRK14261 17 GEKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVALRRKIGMVFQRP 96 (253)
T ss_pred CCeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchhhhhceEEEEecCC
Confidence 4467999999999999999999999999999999999964321 247999999987642 23456799999999
Q ss_pred CCCCCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEE
Q 001400 912 IHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVF 991 (1085)
Q Consensus 912 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~ill 991 (1085)
.+++. ||+||+.|....+.. ......++.+.++++.+++.+........ .+..||+|||||++|||||+.+|++++
T Consensus 97 ~~~~~-tv~eni~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~~~-~~~~LS~G~~qrv~laral~~~p~lll 172 (253)
T PRK14261 97 NPFPK-SIYENVAYGPRIHGE--KNKKTLDTIVEKSLKGAALWDEVKDRLHD-SALSLSGGQQQRLCIARTLAVNPEVIL 172 (253)
T ss_pred ccCcc-cHHHHHHhhHHhcCC--CCHHHHHHHHHHHHHHhcCchhhHHHhhc-ChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 88875 999999886543211 11223345577788888774311111111 235799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCC
Q 001400 992 MDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1085)
Q Consensus 992 lDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~ 1055 (1085)
|||||+|||+.++..+.+.|+++.+ ++|||++||+++ .+.+.+|++++|++ |+++..|+..
T Consensus 173 LDEP~~gLD~~~~~~l~~~l~~~~~-~~tvii~sh~~~-~~~~~~d~v~~l~~-G~i~~~g~~~ 233 (253)
T PRK14261 173 MDEPCSALDPIATAKIEDLIEDLKK-EYTVIIVTHNMQ-QAARVSDYTGFMYL-GKLIEFDKTT 233 (253)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHhh-CceEEEEEcCHH-HHHhhCCEEEEEEC-CEEEEcCCHH
Confidence 9999999999999999999999865 689999999986 46678999999985 7888888753
|
|
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-35 Score=330.47 Aligned_cols=202 Identities=26% Similarity=0.375 Sum_probs=165.9
Q ss_pred ceeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCC---CceEEEEccCCCCCCC
Q 001400 147 KLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP---PRTSAYVSQQDWQVAE 223 (1085)
Q Consensus 147 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~ 223 (1085)
+.++|+|+|+++++||.++|+|++|||||||++.|+|-++++ +|+|+.||.++..... ++.+++++|...+| .
T Consensus 350 ~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~---~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF-~ 425 (573)
T COG4987 350 QTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQ---QGSITLNGVEIASLDEQALRETISVLTQRVHLF-S 425 (573)
T ss_pred ccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCC---CCeeeECCcChhhCChhhHHHHHhhhccchHHH-H
Confidence 457999999999999999999999999999999999999887 9999999998876654 46889999988544 5
Q ss_pred CCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCC-------ccccc
Q 001400 224 MTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGL-------DTCAD 296 (1085)
Q Consensus 224 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL-------~~~~d 296 (1085)
.|+|+||..+...- + .+.+-++++..|| ++..|
T Consensus 426 ~Tlr~NL~lA~~~A---s-------------------------------------DEel~~aL~qvgL~~l~~~~p~gl~ 465 (573)
T COG4987 426 GTLRDNLRLANPDA---S-------------------------------------DEELWAALQQVGLEKLLESAPDGLN 465 (573)
T ss_pred HHHHHHHhhcCCCC---C-------------------------------------HHHHHHHHHHcCHHHHHHhChhhhh
Confidence 69999998753210 0 0113334444444 34678
Q ss_pred ccccCcccccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcC
Q 001400 297 TLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFD 376 (1085)
Q Consensus 297 t~vg~~~~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D 376 (1085)
|.+|+ +.+.||||||||++|||+|+.++++++|||||.|||+.|..++++.+.+.++ ++| ++.++|+...+ +.||
T Consensus 466 t~lge-~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~--~kT-ll~vTHrL~~l-e~~d 540 (573)
T COG4987 466 TWLGE-GGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAE--GKT-LLMVTHRLRGL-ERMD 540 (573)
T ss_pred chhcc-CCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhc--CCe-EEEEecccccH-hhcC
Confidence 89986 5668999999999999999999999999999999999999999999987654 455 44566766554 6789
Q ss_pred eEEEecCCeEEEecChhhHHH
Q 001400 377 DVILLSEGQIVYQGPRVSVLD 397 (1085)
Q Consensus 377 ~ii~L~~G~iv~~G~~~~~~~ 397 (1085)
+|++|++|+++++|.+.+++.
T Consensus 541 rIivl~~Gkiie~G~~~~Ll~ 561 (573)
T COG4987 541 RIIVLDNGKIIEEGTHAELLA 561 (573)
T ss_pred EEEEEECCeeeecCCHHhhhc
Confidence 999999999999999998864
|
|
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-34 Score=315.23 Aligned_cols=213 Identities=21% Similarity=0.252 Sum_probs=168.7
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhh--CCCCceeeEEEECCccCCCCCC----CceEEEEccCCCCC
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRL--GHHLQVSGKITYNGHGFKEFVP----PRTSAYVSQQDWQV 221 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l--~~~~~~~G~i~~~G~~~~~~~~----~~~~~yv~Q~d~~~ 221 (1085)
+.+|+|+|+.|++|++++|+|||||||||||++|+|.+ +|. +|+|.++|.++..... +..++|++|++.++
T Consensus 13 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~ 89 (243)
T TIGR01978 13 KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVT---SGTILFKGQDLLELEPDERARAGLFLAFQYPEEI 89 (243)
T ss_pred EEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC---cceEEECCEecCCCCHHHhhccceEeeecccccc
Confidence 46999999999999999999999999999999999985 444 9999999988754322 23489999999999
Q ss_pred CCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcc-ccccccc
Q 001400 222 AEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDT-CADTLVG 300 (1085)
Q Consensus 222 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~-~~dt~vg 300 (1085)
+.+|++|++.+............ ... ..+....++.+++.+||+. ..++.++
T Consensus 90 ~~~t~~~~~~~~~~~~~~~~~~~-------------~~~--------------~~~~~~~~~~~l~~~~l~~~~~~~~~~ 142 (243)
T TIGR01978 90 PGVSNLEFLRSALNARRSARGEE-------------PLD--------------LLDFLKLLKAKLALLGMDEEFLNRSVN 142 (243)
T ss_pred CCcCHHHHHHHHHHHhhcccccc-------------ccc--------------HHHHHHHHHHHHHHcCCchhhcccccc
Confidence 99999999987543211000000 000 0001234788899999974 4554442
Q ss_pred CcccccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhh-cCeEE
Q 001400 301 DEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYEL-FDDVI 379 (1085)
Q Consensus 301 ~~~~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~-~D~ii 379 (1085)
..|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++++ . +++|+.++|+.+++... +|+++
T Consensus 143 ----~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~-~~tvi~vsH~~~~~~~~~~d~i~ 216 (243)
T TIGR01978 143 ----EGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLRE-P-DRSFLIITHYQRLLNYIKPDYVH 216 (243)
T ss_pred ----cCcCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHH-C-CcEEEEEEecHHHHHhhcCCeEE
Confidence 24999999999999999999999999999999999999999999999864 2 45566688888888888 89999
Q ss_pred EecCCeEEEecChhhHH
Q 001400 380 LLSEGQIVYQGPRVSVL 396 (1085)
Q Consensus 380 ~L~~G~iv~~G~~~~~~ 396 (1085)
+|++|++++.|+.+++.
T Consensus 217 ~l~~G~i~~~g~~~~~~ 233 (243)
T TIGR01978 217 VLLDGRIVKSGDVELAK 233 (243)
T ss_pred EEeCCEEEEecCHHHhc
Confidence 99999999999987543
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=348.28 Aligned_cols=218 Identities=24% Similarity=0.315 Sum_probs=177.2
Q ss_pred cCCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCCh----hcccceEEEEccCCCCC
Q 001400 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ----ETFARISGYCEQNDIHS 914 (1085)
Q Consensus 839 ~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~----~~~~~~~gy~~Q~~~~~ 914 (1085)
+++..+|+||||+|++||++||+|+||||||||+++|+|... +.+|+|.++|.++.. ...++.+||++|++.++
T Consensus 8 ~~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~ 85 (491)
T PRK10982 8 FPGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQ--KDSGSILFQGKEIDFKSSKEALENGISMVHQELNLV 85 (491)
T ss_pred eCCEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC--CCceEEEECCEECCCCCHHHHHhCCEEEEecccccc
Confidence 345679999999999999999999999999999999999866 468999999987542 22356799999999888
Q ss_pred CCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Q 001400 915 PGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDE 994 (1085)
Q Consensus 915 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDE 994 (1085)
+.+||+||+.+................+.++++++.+++.+..+..+ .+|||||||||+|||||+.+|++|||||
T Consensus 86 ~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq~qrv~lA~al~~~p~lllLDE 160 (491)
T PRK10982 86 LQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKV-----ATLSVSQMQMIEIAKAFSYNAKIVIMDE 160 (491)
T ss_pred cCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCch-----hhCCHHHHHHHHHHHHHHhCCCEEEEeC
Confidence 89999999987532110100122333456788999999876655543 5799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCCCc-hHHHHHHH
Q 001400 995 PTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGSK-SCELIKYF 1065 (1085)
Q Consensus 995 PtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~~~-~~~~~~~~ 1065 (1085)
||+|||+.++..+++.|++++++|.|||++||+++ ++...||++++|++ |+++..|+..+. ..++.+.+
T Consensus 161 Pt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~~~~~~~~~~~~ 230 (491)
T PRK10982 161 PTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKME-EIFQLCDEITILRD-GQWIATQPLAGLTMDKIIAMM 230 (491)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEeecChhhCCHHHHHHHH
Confidence 99999999999999999999878999999999986 47788999999985 789998876553 23344433
|
|
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-34 Score=316.40 Aligned_cols=204 Identities=25% Similarity=0.336 Sum_probs=164.2
Q ss_pred CCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCC--C-eeeeEEEEcCccCCh-----hcccceEEEEccCC
Q 001400 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTG--G-IIEGDIYISGYPKRQ-----ETFARISGYCEQND 911 (1085)
Q Consensus 840 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~--~-~~~G~i~i~g~~~~~-----~~~~~~~gy~~Q~~ 911 (1085)
+...+|+|+||+|++||++||+|+||||||||+++|+|...+ . +.+|+|.++|.++.. ...++.++|++|++
T Consensus 15 ~~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~~~~~i~~~~q~~ 94 (251)
T PRK14251 15 GNYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVELRKEVGMVFQQP 94 (251)
T ss_pred CCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHHHhhccEEEEecCC
Confidence 445799999999999999999999999999999999997541 1 358999999987532 23456799999998
Q ss_pred CCCCCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCc----ccccccCCCCCCCCCHHHHHHHHHHHHHhcCC
Q 001400 912 IHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTS----LSGALIGLPGINGLSTEQRKRLTIAVELVANP 987 (1085)
Q Consensus 912 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p 987 (1085)
.+++ .|++||+.+....+.. .......+.++++++.+++.. ..+. .+.+||+|||||++|||||+.+|
T Consensus 95 ~~~~-~tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~~~~LS~Gq~qr~~laral~~~p 166 (251)
T PRK14251 95 TPFP-FSVYDNVAYGLKIAGV--KDKELIDQRVEESLKQAAIWKETKDNLDR-----NAQAFSGGQQQRICIARALAVRP 166 (251)
T ss_pred ccCC-CcHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHHcCCCcchHHHhcc-----ChhhCCHHHHHHHHHHHHHhcCC
Confidence 8775 7999999875432211 111223345678888888742 1222 23579999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCC
Q 001400 988 SIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1085)
Q Consensus 988 ~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~ 1054 (1085)
++|||||||+|||+.++..+.+.|+++. ++.|||++||+++ ++.+.+|++++|++ |+++..|+.
T Consensus 167 ~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiiiisH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 230 (251)
T PRK14251 167 KVVLLDEPTSALDPISSSEIEETLMELK-HQYTFIMVTHNLQ-QAGRISDQTAFLMN-GDLIEAGPT 230 (251)
T ss_pred CEEEecCCCccCCHHHHHHHHHHHHHHH-cCCeEEEEECCHH-HHHhhcCEEEEEEC-CEEEEeCCH
Confidence 9999999999999999999999999985 4799999999986 46778999999985 688888775
|
|
| >PRK15056 manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=320.64 Aligned_cols=206 Identities=24% Similarity=0.406 Sum_probs=164.4
Q ss_pred CeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCChhcccceEEEEccCCCCC--CCCC
Q 001400 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHS--PGLT 918 (1085)
Q Consensus 841 ~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gy~~Q~~~~~--~~~t 918 (1085)
++.+|+|+||+|++||++||+|+||||||||+++|+|..+ +.+|+|.++|.+......++.++|++|++.+. ...+
T Consensus 19 ~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~~~~~ 96 (272)
T PRK15056 19 GHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVR--LASGKISILGQPTRQALQKNLVAYVPQSEEVDWSFPVL 96 (272)
T ss_pred CcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEhHHhhccceEEEeccccccccCCCcc
Confidence 3569999999999999999999999999999999999866 46899999998764332334699999997652 2347
Q ss_pred HHHHHHHhhhhcC-CCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCC
Q 001400 919 VLESLLFSAWLRL-PSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTS 997 (1085)
Q Consensus 919 v~e~l~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEPts 997 (1085)
+.+++.++..... ..........+.++++++.+++.+..+..+ ..||+|||||++|||||+.+|+||+|||||+
T Consensus 97 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgG~~qrv~laraL~~~p~llllDEPt~ 171 (272)
T PRK15056 97 VEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQI-----GELSGGQKKRVFLARAIAQQGQVILLDEPFT 171 (272)
T ss_pred hhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 8888865321100 000111223345678899999977665543 5799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCCC
Q 001400 998 GLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGS 1056 (1085)
Q Consensus 998 gLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~~ 1056 (1085)
|||+.++..+.+.|++++++|+|||++||+++ .+.+.+|+++++ + |++++.|+..+
T Consensus 172 ~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~-~~~~~~d~v~~~-~-G~i~~~g~~~~ 227 (272)
T PRK15056 172 GVDVKTEARIISLLRELRDEGKTMLVSTHNLG-SVTEFCDYTVMV-K-GTVLASGPTET 227 (272)
T ss_pred cCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEE-C-CEEEeecCHHh
Confidence 99999999999999999777999999999986 477889998766 4 78998887654
|
|
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-34 Score=312.23 Aligned_cols=206 Identities=26% Similarity=0.332 Sum_probs=172.7
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCC-CCceEEEEccCCCCCCCCCH
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV-PPRTSAYVSQQDWQVAEMTV 226 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~-~~~~~~yv~Q~d~~~~~lTV 226 (1085)
+++|+|+|+.++||++++|+||||||||||+++|+|.+++. +|+|+++|+++.+.. .++.++|++|++..++.+||
T Consensus 13 ~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~ 89 (232)
T cd03300 13 FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPT---SGEILLDGKDITNLPPHKRPVNTVFQNYALFPHLTV 89 (232)
T ss_pred eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcCcCChhhcceEEEecccccCCCCcH
Confidence 36999999999999999999999999999999999999876 899999999876432 24679999999988888999
Q ss_pred HHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCccccc
Q 001400 227 RETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKG 306 (1085)
Q Consensus 227 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 306 (1085)
+||+.+.....+.. .. .....++++++.+||++..++.+ ..
T Consensus 90 ~~nl~~~~~~~~~~--~~--------------------------------~~~~~~~~~l~~~~l~~~~~~~~-----~~ 130 (232)
T cd03300 90 FENIAFGLRLKKLP--KA--------------------------------EIKERVAEALDLVQLEGYANRKP-----SQ 130 (232)
T ss_pred HHHHHHHHHhcCCC--HH--------------------------------HHHHHHHHHHHHcCCchhhcCCh-----hh
Confidence 99998764332110 00 01123678899999987776654 46
Q ss_pred CchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEecCCeE
Q 001400 307 ISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQI 386 (1085)
Q Consensus 307 LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~~G~i 386 (1085)
||||||||++|||||+.+|++++|||||+|||+.++..+.+.|+++++..+ .+|+.++|...++.+++|++++|++|++
T Consensus 131 lS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~-~tiii~sh~~~~~~~~~d~i~~l~~G~~ 209 (232)
T cd03300 131 LSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELG-ITFVFVTHDQEEALTMSDRIAVMNKGKI 209 (232)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcC-CEEEEEeCCHHHHHHhcCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999999875334 4555577888889999999999999999
Q ss_pred EEecChhhHH
Q 001400 387 VYQGPRVSVL 396 (1085)
Q Consensus 387 v~~G~~~~~~ 396 (1085)
++.|+.+++.
T Consensus 210 ~~~~~~~~~~ 219 (232)
T cd03300 210 QQIGTPEEIY 219 (232)
T ss_pred EecCCHHHHH
Confidence 9999876653
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-34 Score=318.78 Aligned_cols=205 Identities=25% Similarity=0.350 Sum_probs=168.8
Q ss_pred CeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCCh------hcccceEEEEccCCC--
Q 001400 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ------ETFARISGYCEQNDI-- 912 (1085)
Q Consensus 841 ~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~------~~~~~~~gy~~Q~~~-- 912 (1085)
++.+|+|+||+|++||+++|+|+||||||||+++|+|... +.+|+|.++|.++.. ...++.++|++|++.
T Consensus 24 ~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~sG~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~ 101 (268)
T PRK10419 24 HQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLES--PSQGNVSWRGEPLAKLNRAQRKAFRRDIQMVFQDSISA 101 (268)
T ss_pred ceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEeccccChhHHHHHHhcEEEEEcChhhc
Confidence 3579999999999999999999999999999999999865 568999999987542 124567999999973
Q ss_pred CCCCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCC-cccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEE
Q 001400 913 HSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELT-SLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVF 991 (1085)
Q Consensus 913 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~ill 991 (1085)
+.+..|+.|++.+..... ...........++++++.+++. ...+.. +..||+|||||++|||||+.+|+|||
T Consensus 102 ~~~~~t~~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~~LS~Ge~qrl~laral~~~p~lll 174 (268)
T PRK10419 102 VNPRKTVREIIREPLRHL--LSLDKAERLARASEMLRAVDLDDSVLDKR-----PPQLSGGQLQRVCLARALAVEPKLLI 174 (268)
T ss_pred cCCCCCHHHHHHHHHHhh--ccCCHHHHHHHHHHHHHHcCCChhHhhCC-----CccCChHHHHHHHHHHHHhcCCCEEE
Confidence 567789999987643211 1122333445678899999885 344443 35799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHC-CceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCCC
Q 001400 992 MDEPTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGS 1056 (1085)
Q Consensus 992 lDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~~ 1056 (1085)
|||||+|||+.++..+.+.|+++.++ |.|||++||+++ .+.+.+|++++|+ +|++++.|+..+
T Consensus 175 LDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~-~i~~~~d~i~~l~-~G~i~~~g~~~~ 238 (268)
T PRK10419 175 LDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLR-LVERFCQRVMVMD-NGQIVETQPVGD 238 (268)
T ss_pred EeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHH-HHHHhCCEEEEEE-CCEEeeeCChhh
Confidence 99999999999999999999998764 899999999986 4667899999998 478999987655
|
|
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-35 Score=312.69 Aligned_cols=200 Identities=27% Similarity=0.399 Sum_probs=161.0
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCCCceEEEEccCCCCC--CCCC
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQV--AEMT 225 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~~~~~~yv~Q~d~~~--~~lT 225 (1085)
.++|+|+|++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++.. .++.++|++|++.+. ..+|
T Consensus 12 ~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~--~~~~i~~v~q~~~~~~~~~~t 86 (213)
T cd03235 12 HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPT---SGSIRVFGKPLEK--ERKRIGYVPQRRSIDRDFPIS 86 (213)
T ss_pred EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC---CCEEEECCccHHH--HHhheEEeccccccccCCCCc
Confidence 46999999999999999999999999999999999998876 9999999986542 345799999997653 3489
Q ss_pred HHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCcccc
Q 001400 226 VRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLK 305 (1085)
Q Consensus 226 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 305 (1085)
|+||+.++...... .+.. .. ......++.+++.+||++..++.+ .
T Consensus 87 v~e~l~~~~~~~~~--~~~~--------------~~--------------~~~~~~~~~~l~~~~l~~~~~~~~-----~ 131 (213)
T cd03235 87 VRDVVLMGLYGHKG--LFRR--------------LS--------------KADKAKVDEALERVGLSELADRQI-----G 131 (213)
T ss_pred HHHHHHhccccccc--cccC--------------CC--------------HHHHHHHHHHHHHcCCHHHHhCCc-----c
Confidence 99999875321100 0000 00 001224778899999987666654 4
Q ss_pred cCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEecCCe
Q 001400 306 GISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQ 385 (1085)
Q Consensus 306 ~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~~G~ 385 (1085)
.|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++++ . +++++.++|+.+++.+++|++++|++|
T Consensus 132 ~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~-~~tvi~~sH~~~~~~~~~d~i~~l~~~- 208 (213)
T cd03235 132 ELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRR-E-GMTILVVTHDLGLVLEYFDRVLLLNRT- 208 (213)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-c-CCEEEEEeCCHHHHHHhcCEEEEEcCc-
Confidence 6999999999999999999999999999999999999999999999875 3 455666889999999999999999886
Q ss_pred EEEec
Q 001400 386 IVYQG 390 (1085)
Q Consensus 386 iv~~G 390 (1085)
+++.|
T Consensus 209 ~~~~g 213 (213)
T cd03235 209 VVASG 213 (213)
T ss_pred EeecC
Confidence 66554
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >PRK14254 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-34 Score=320.81 Aligned_cols=202 Identities=23% Similarity=0.290 Sum_probs=163.5
Q ss_pred CCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCC---CeeeeEEEEcCccCCh-----hcccceEEEEccCC
Q 001400 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTG---GIIEGDIYISGYPKRQ-----ETFARISGYCEQND 911 (1085)
Q Consensus 840 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~---~~~~G~i~i~g~~~~~-----~~~~~~~gy~~Q~~ 911 (1085)
++..+|+|+||+|++||+++|+|+||||||||+++|+|...+ .+.+|+|.++|.++.. ...++.++|++|++
T Consensus 50 ~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~i~~v~q~~ 129 (285)
T PRK14254 50 GDEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDPVALRRRIGMVFQKP 129 (285)
T ss_pred CCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccchHhhhccEEEEecCC
Confidence 445799999999999999999999999999999999997542 1358999999987532 23567899999998
Q ss_pred CCCCCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCc----ccccccCCCCCCCCCHHHHHHHHHHHHHhcCC
Q 001400 912 IHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTS----LSGALIGLPGINGLSTEQRKRLTIAVELVANP 987 (1085)
Q Consensus 912 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p 987 (1085)
.+++. |+.||+.+....+.. .. ...+.++++++.+++.. ..+.. +..||+|||||++|||||+.+|
T Consensus 130 ~l~~~-tv~enl~~~~~~~~~---~~-~~~~~~~~~l~~~~l~~~i~~~~~~~-----~~~LSgGe~qrv~LAraL~~~p 199 (285)
T PRK14254 130 NPFPK-SIYDNVAYGLKIQGY---DG-DIDERVEESLRRAALWDEVKDQLDSS-----GLDLSGGQQQRLCIARAIAPDP 199 (285)
T ss_pred ccCcC-CHHHHHHHHHHHcCC---cH-HHHHHHHHHHHHcCCCchhHHHHhCC-----cccCCHHHHHHHHHHHHHHcCC
Confidence 87775 999999876433211 11 23345788888888753 22222 3579999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEE-EecCcEEEEecCC
Q 001400 988 SIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLF-MKRGGELIYAGPL 1054 (1085)
Q Consensus 988 ~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~-l~~gG~~~~~g~~ 1054 (1085)
+||||||||+|||+.++..+.+.|+++++ +.|||++||+++ .+...+|++++ |+ .|+++..|+.
T Consensus 200 ~lLLLDEPts~LD~~~~~~l~~~L~~~~~-~~tiii~tH~~~-~i~~~~dri~v~l~-~G~i~~~g~~ 264 (285)
T PRK14254 200 EVILMDEPASALDPVATSKIEDLIEELAE-EYTVVIVTHNMQ-QAARISDKTAVFLT-GGELVEFDDT 264 (285)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHhhcCEEEEEee-CCEEEEeCCH
Confidence 99999999999999999999999999875 489999999986 46678999764 56 5788888874
|
|
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-34 Score=317.47 Aligned_cols=208 Identities=28% Similarity=0.407 Sum_probs=170.3
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCC---CceEEEEccCCCCCCCC
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP---PRTSAYVSQQDWQVAEM 224 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 224 (1085)
..+|+|+|+.+++|++++|+|||||||||||++|+|.+++. +|+|.++|.++..... ++.++|++|++.+++.+
T Consensus 14 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 90 (256)
T TIGR03873 14 RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPD---AGTVDLAGVDLHGLSRRARARRVALVEQDSDTAVPL 90 (256)
T ss_pred EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC---CCEEEECCEEcccCCHHHHhhheEEecccCccCCCC
Confidence 36999999999999999999999999999999999998876 9999999988755321 34689999998778889
Q ss_pred CHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCccc
Q 001400 225 TVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEML 304 (1085)
Q Consensus 225 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 304 (1085)
||+||+.++..... . . .. .+. .+....++++++.+||.+..++.+
T Consensus 91 tv~e~l~~~~~~~~--~-------~------~~-~~~--------------~~~~~~~~~~l~~~~l~~~~~~~~----- 135 (256)
T TIGR03873 91 TVRDVVALGRIPHR--S-------L------WA-GDS--------------PHDAAVVDRALARTELSHLADRDM----- 135 (256)
T ss_pred CHHHHHHhcchhhh--h-------h------cc-CCC--------------HHHHHHHHHHHHHcCcHhhhcCCc-----
Confidence 99999987421000 0 0 00 000 001124677889999987666654
Q ss_pred ccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEecCC
Q 001400 305 KGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEG 384 (1085)
Q Consensus 305 ~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~~G 384 (1085)
..|||||||||+||+|++.+|++++|||||+|||+.+...+.+.|+++.+. +++|+.++|+.+++.+++|+|++|++|
T Consensus 136 ~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~--~~tiii~sH~~~~~~~~~d~i~~l~~G 213 (256)
T TIGR03873 136 STLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAAT--GVTVVAALHDLNLAASYCDHVVVLDGG 213 (256)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhc--CCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 469999999999999999999999999999999999999999999998642 456666888899999999999999999
Q ss_pred eEEEecChhhH
Q 001400 385 QIVYQGPRVSV 395 (1085)
Q Consensus 385 ~iv~~G~~~~~ 395 (1085)
+++..|+.+++
T Consensus 214 ~i~~~g~~~~~ 224 (256)
T TIGR03873 214 RVVAAGPPREV 224 (256)
T ss_pred CEEEecCHHHh
Confidence 99999988765
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-34 Score=318.89 Aligned_cols=205 Identities=20% Similarity=0.287 Sum_probs=169.4
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCC---CCceEEEEccCCC-CCCC
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV---PPRTSAYVSQQDW-QVAE 223 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~---~~~~~~yv~Q~d~-~~~~ 223 (1085)
..+|+|+|++|++||+++|+||||||||||+++|+|.+++. +|+|.++|.++.... .++.++|++|++. .++.
T Consensus 20 ~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~ 96 (277)
T PRK13642 20 VNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEF---EGKVKIDGELLTAENVWNLRRKIGMVFQNPDNQFVG 96 (277)
T ss_pred CeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CCEEEECCEECCcCCHHHHhcceEEEEECHHHhhcc
Confidence 35999999999999999999999999999999999999876 999999998875422 2467999999974 5778
Q ss_pred CCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCcc
Q 001400 224 MTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEM 303 (1085)
Q Consensus 224 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 303 (1085)
.||.||+.++....+.. + . ....+++++++.+||.+..++.+
T Consensus 97 ~tv~eni~~~~~~~~~~-~---------~------------------------~~~~~~~~~l~~~~l~~~~~~~~---- 138 (277)
T PRK13642 97 ATVEDDVAFGMENQGIP-R---------E------------------------EMIKRVDEALLAVNMLDFKTREP---- 138 (277)
T ss_pred CCHHHHHHhhHHHcCCC-H---------H------------------------HHHHHHHHHHHHCCCHhHhhCCc----
Confidence 89999998754321110 0 0 00123678889999987666654
Q ss_pred cccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEecC
Q 001400 304 LKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSE 383 (1085)
Q Consensus 304 ~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~~ 383 (1085)
..|||||||||+|||||+.+|++++|||||+|||+.++..+.+.|+++++.. +++|+.++|+.+++. .+|+|++|++
T Consensus 139 -~~LS~G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~-g~tiil~sH~~~~~~-~~d~i~~l~~ 215 (277)
T PRK13642 139 -ARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKY-QLTVLSITHDLDEAA-SSDRILVMKA 215 (277)
T ss_pred -ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHH-hCCEEEEEEC
Confidence 4699999999999999999999999999999999999999999999987643 445566788888886 6999999999
Q ss_pred CeEEEecChhhHH
Q 001400 384 GQIVYQGPRVSVL 396 (1085)
Q Consensus 384 G~iv~~G~~~~~~ 396 (1085)
|+++..|+.+++.
T Consensus 216 G~i~~~g~~~~~~ 228 (277)
T PRK13642 216 GEIIKEAAPSELF 228 (277)
T ss_pred CEEEEeCCHHHHh
Confidence 9999999988764
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=349.59 Aligned_cols=201 Identities=22% Similarity=0.332 Sum_probs=171.3
Q ss_pred CCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCCh---hc-ccceEEEEccCCCCCC
Q 001400 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ET-FARISGYCEQNDIHSP 915 (1085)
Q Consensus 840 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~---~~-~~~~~gy~~Q~~~~~~ 915 (1085)
++..+|+|+||+|++|+++||+||||||||||+++|+|... +.+|+|.++|.++.. .. .++.+||++|++.+++
T Consensus 22 ~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~ 99 (510)
T PRK15439 22 SGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVP--PDSGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLLFP 99 (510)
T ss_pred CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECCCCCHHHHHhCCEEEEeccCccCC
Confidence 45679999999999999999999999999999999999866 468999999987542 11 2346999999999999
Q ss_pred CCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCC
Q 001400 916 GLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEP 995 (1085)
Q Consensus 916 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEP 995 (1085)
.+||+||+.|.... .....+.++++++.+++.+..+..+ ..|||||||||+|||||+.+|+|||||||
T Consensus 100 ~~tv~e~l~~~~~~-------~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~aL~~~p~lllLDEP 167 (510)
T PRK15439 100 NLSVKENILFGLPK-------RQASMQKMKQLLAALGCQLDLDSSA-----GSLEVADRQIVEILRGLMRDSRILILDEP 167 (510)
T ss_pred CCcHHHHhhccccc-------chHHHHHHHHHHHHcCCCccccCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEECC
Confidence 99999999875311 1223456788999999987666543 57999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCCC
Q 001400 996 TSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGS 1056 (1085)
Q Consensus 996 tsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~~ 1056 (1085)
|+|||+.++..+++.|++++++|.|||++|||++ .+.+.||++++|++ |++++.|+..+
T Consensus 168 t~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~-~~~~~~d~i~~l~~-G~i~~~g~~~~ 226 (510)
T PRK15439 168 TASLTPAETERLFSRIRELLAQGVGIVFISHKLP-EIRQLADRISVMRD-GTIALSGKTAD 226 (510)
T ss_pred CCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEecChHH
Confidence 9999999999999999999878999999999986 47788999999985 68888887654
|
|
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-34 Score=315.44 Aligned_cols=209 Identities=22% Similarity=0.290 Sum_probs=163.6
Q ss_pred CCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCC--C-CeeeeEEEEcCccCCh-----hcccceEEEEccCC
Q 001400 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKT--G-GIIEGDIYISGYPKRQ-----ETFARISGYCEQND 911 (1085)
Q Consensus 840 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~--~-~~~~G~i~i~g~~~~~-----~~~~~~~gy~~Q~~ 911 (1085)
++..+|+|+||+|.+||++||+|+||||||||+++|+|... + .+.+|+|.++|.++.. ...++.+||++|++
T Consensus 16 ~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~ 95 (252)
T PRK14255 16 GKFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQLRKQVGMVFQQP 95 (252)
T ss_pred CCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHHHhcCeEEEEECCC
Confidence 44679999999999999999999999999999999999643 1 1247999999987631 23456799999998
Q ss_pred CCCCCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEE
Q 001400 912 IHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVF 991 (1085)
Q Consensus 912 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~ill 991 (1085)
.+++ .|++||+.+....+... ......+.+.+.++.+++......... ..+..||+|||||++|||||+.+|++|+
T Consensus 96 ~~~~-~tv~~nl~~~~~~~~~~--~~~~~~~~~~~~l~~~~l~~~i~~~~~-~~~~~LS~Gq~qrv~laral~~~p~lll 171 (252)
T PRK14255 96 NPFP-FSIYENVIYGLRLAGVK--DKAVLDEAVETSLKQAAIWDEVKDHLH-ESALSLSGGQQQRVCIARVLAVKPDVIL 171 (252)
T ss_pred ccCC-CcHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHHcCCccchhhHHh-cCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 8887 69999998764332111 112223345667777776421111111 1235799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCC
Q 001400 992 MDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1085)
Q Consensus 992 lDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~ 1055 (1085)
|||||+|||+.++..+.+.|+++.+ +.|||++||+++ .+.+.+|++++|++ |+++..|+..
T Consensus 172 lDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~ 232 (252)
T PRK14255 172 LDEPTSALDPISSTQIENMLLELRD-QYTIILVTHSMH-QASRISDKTAFFLT-GNLIEFADTK 232 (252)
T ss_pred EcCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEeCCHH
Confidence 9999999999999999999999865 589999999986 47788999999985 7888888653
|
|
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-34 Score=317.01 Aligned_cols=208 Identities=25% Similarity=0.290 Sum_probs=165.9
Q ss_pred CeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCC---CeeeeEEEEcCccCCh-----hcccceEEEEccCCC
Q 001400 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTG---GIIEGDIYISGYPKRQ-----ETFARISGYCEQNDI 912 (1085)
Q Consensus 841 ~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~---~~~~G~i~i~g~~~~~-----~~~~~~~gy~~Q~~~ 912 (1085)
+..+|+|+||+|++||+++|+|+||||||||+++|+|.... .+.+|+|.++|.++.. ..+++.++|++|++.
T Consensus 37 ~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~~~~~~~i~~v~q~~~ 116 (272)
T PRK14236 37 DKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVAELRRRVGMVFQRPN 116 (272)
T ss_pred CeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCHHHHhccEEEEecCCc
Confidence 45799999999999999999999999999999999997542 1368999999987642 234678999999988
Q ss_pred CCCCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q 001400 913 HSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFM 992 (1085)
Q Consensus 913 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illl 992 (1085)
+++. |++||+.+....... .......+.++++++.+++.+........ .+..||+|||||++|||||+.+|+||||
T Consensus 117 l~~~-tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-~~~~LS~Gq~qrv~laral~~~p~lllL 192 (272)
T PRK14236 117 PFPK-SIYENVVYGLRLQGI--NNRRVLDEAVERSLRGAALWDEVKDRLHE-NAFGLSGGQQQRLVIARAIAIEPEVLLL 192 (272)
T ss_pred cCcc-cHHHHHHHHHHhcCC--CcHHHHHHHHHHHHHHcCCChhHHHHhhC-CcccCCHHHHHHHHHHHHHHCCCCEEEE
Confidence 8876 999999876432211 11122334577888888875311111111 1357999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCC
Q 001400 993 DEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1085)
Q Consensus 993 DEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~ 1055 (1085)
||||+|||+.++..+++.|+++.+ +.|||++||+++ ++.+.+|++++|++ |+++..|+..
T Consensus 193 DEPt~gLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~-~~~~~~d~i~~l~~-G~i~~~g~~~ 252 (272)
T PRK14236 193 DEPTSALDPISTLKIEELITELKS-KYTIVIVTHNMQ-QAARVSDYTAFMYM-GKLVEYGDTD 252 (272)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEeCCHH-HHHhhCCEEEEEEC-CEEEecCCHH
Confidence 999999999999999999999865 799999999986 46778999999985 7898888754
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-34 Score=348.21 Aligned_cols=212 Identities=22% Similarity=0.359 Sum_probs=173.4
Q ss_pred ccCCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCChh----cccceEEEEccCCCC
Q 001400 838 LEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE----TFARISGYCEQNDIH 913 (1085)
Q Consensus 838 ~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~----~~~~~~gy~~Q~~~~ 913 (1085)
.+++..+|+||||++++||++||+|+||||||||+++|+|..++++.+|+|.++|.++... ..++.+||++|++.+
T Consensus 10 ~~~~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~ 89 (500)
T TIGR02633 10 TFGGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAGIVIIHQELTL 89 (500)
T ss_pred EeCCeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCCEEEEeecccc
Confidence 3455679999999999999999999999999999999999865323589999999876431 134569999999988
Q ss_pred CCCCCHHHHHHHhhhhcCCC-cccHHHHHHHHHHHHHHcCCCccc-ccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEE
Q 001400 914 SPGLTVLESLLFSAWLRLPS-EIELETQRAFVEEVMELVELTSLS-GALIGLPGINGLSTEQRKRLTIAVELVANPSIVF 991 (1085)
Q Consensus 914 ~~~~tv~e~l~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~ill 991 (1085)
++.+||.||+.+....+... ........+.++++++.+++.+.. +.. +..|||||||||+|||||+.+|+|||
T Consensus 90 ~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LSgG~~qrv~iA~al~~~p~lll 164 (500)
T TIGR02633 90 VPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRP-----VGDYGGGQQQLVEIAKALNKQARLLI 164 (500)
T ss_pred CCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCc-----hhhCCHHHHHHHHHHHHHhhCCCEEE
Confidence 89999999998764322110 012233345678899999987543 222 35799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCCC
Q 001400 992 MDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGS 1056 (1085)
Q Consensus 992 lDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~~ 1056 (1085)
|||||+|||+.++..+.+.|++++++|.|||++|||++ .+.+.||++++|++ |++++.|+..+
T Consensus 165 LDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~-~~~~~~d~i~~l~~-G~i~~~~~~~~ 227 (500)
T TIGR02633 165 LDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLN-EVKAVCDTICVIRD-GQHVATKDMST 227 (500)
T ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHH-HHHHhCCEEEEEeC-CeEeeecCccc
Confidence 99999999999999999999999878999999999986 47778999999985 68888887654
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=320.28 Aligned_cols=209 Identities=22% Similarity=0.268 Sum_probs=164.9
Q ss_pred CCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCC---CeeeeEEEEcCccCCh-----hcccceEEEEccCC
Q 001400 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTG---GIIEGDIYISGYPKRQ-----ETFARISGYCEQND 911 (1085)
Q Consensus 840 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~---~~~~G~i~i~g~~~~~-----~~~~~~~gy~~Q~~ 911 (1085)
++..+|+|+||+|++||+++|+|+||||||||+++|+|.... .+.+|+|.++|.++.. ..+++.++|++|++
T Consensus 31 ~~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~~~~~~~i~~v~q~~ 110 (274)
T PRK14265 31 GGFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKLRRQVGMVFQRP 110 (274)
T ss_pred CCeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchhHHHhhcEEEEccCC
Confidence 445799999999999999999999999999999999997431 1247999999987532 23466899999998
Q ss_pred CCCCCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEE
Q 001400 912 IHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVF 991 (1085)
Q Consensus 912 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~ill 991 (1085)
.+++. |+.||+.+....+. .. ....+.++++++.+++.......... .+..||+|||||++|||||+.+|++||
T Consensus 111 ~l~~~-tv~~nl~~~~~~~~---~~-~~~~~~~~~~l~~~~l~~~l~~~~~~-~~~~LSgGq~qrv~LAraL~~~p~lll 184 (274)
T PRK14265 111 NPFPK-SIYENIAFAPRANG---YK-GNLDELVEDSLRRAAIWEEVKDKLKE-KGTALSGGQQQRLCIARAIAMKPDVLL 184 (274)
T ss_pred ccccc-cHHHHHHhHHHhcC---ch-HHHHHHHHHHHHHcccchhhHHHhcC-CcccCCHHHHHHHHHHHHHhhCCCEEE
Confidence 87764 99999987643221 11 11223456777777764211111111 235799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEe--------cCcEEEEecCCCC
Q 001400 992 MDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMK--------RGGELIYAGPLGS 1056 (1085)
Q Consensus 992 lDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~--------~gG~~~~~g~~~~ 1056 (1085)
|||||+|||+.++..+.+.|+++.+ ++|||++||+++ .+.+.+|++++|+ +.|++++.|+..+
T Consensus 185 LDEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~~~~~~~~~~G~~~~~g~~~~ 255 (274)
T PRK14265 185 MDEPCSALDPISTRQVEELCLELKE-QYTIIMVTHNMQ-QASRVADWTAFFNTEIDEYGKRRGKLVEFSPTEQ 255 (274)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEecccccccccCceEEEeCCHHH
Confidence 9999999999999999999999864 789999999987 4778899999997 2589999998753
|
|
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-34 Score=314.30 Aligned_cols=211 Identities=20% Similarity=0.263 Sum_probs=167.3
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhC--CCCceeeEEEECCccCCCCC-----CCceEEEEccCCCC
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLG--HHLQVSGKITYNGHGFKEFV-----PPRTSAYVSQQDWQ 220 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~--~~~~~~G~i~~~G~~~~~~~-----~~~~~~yv~Q~d~~ 220 (1085)
+++|+|+|+.+++|++++|+||||||||||+++|+|..+ +..+.+|+|.++|.++.... .++.++|++|++.+
T Consensus 16 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~ 95 (250)
T PRK14245 16 FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPNP 95 (250)
T ss_pred EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHHHHhhheEEEecCCcc
Confidence 359999999999999999999999999999999999732 21124899999999875421 23579999999887
Q ss_pred CCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCccccccccc
Q 001400 221 VAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVG 300 (1085)
Q Consensus 221 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 300 (1085)
++ .||+||+.++....+.... + .....++++++.+||.+...+..
T Consensus 96 ~~-~tv~~nl~~~~~~~~~~~~--------------------~-------------~~~~~~~~~l~~~~l~~~~~~~~- 140 (250)
T PRK14245 96 FP-KSIFENVAYGLRVNGVKDN--------------------A-------------FIRQRVEETLKGAALWDEVKDKL- 140 (250)
T ss_pred Cc-ccHHHHHHHHHHHcCCCcH--------------------H-------------HHHHHHHHHHHHcCCCcchhhhh-
Confidence 76 6999999876432211000 0 00123677888899865322222
Q ss_pred CcccccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEE
Q 001400 301 DEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVIL 380 (1085)
Q Consensus 301 ~~~~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~ 380 (1085)
+..+..|||||||||+|||+|+.+|++++|||||+|||+.++..+.+.|+++.+ + ++|+.++|+..++.+++|++++
T Consensus 141 ~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~-~tiiivtH~~~~~~~~~d~v~~ 217 (250)
T PRK14245 141 KESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKK--D-YTIVIVTHNMQQAARVSDKTAF 217 (250)
T ss_pred hCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--C-CeEEEEeCCHHHHHhhCCEEEE
Confidence 234567999999999999999999999999999999999999999999999843 3 4566688888999999999999
Q ss_pred ecCCeEEEecChhhHH
Q 001400 381 LSEGQIVYQGPRVSVL 396 (1085)
Q Consensus 381 L~~G~iv~~G~~~~~~ 396 (1085)
|++|++++.|+.+++.
T Consensus 218 l~~G~~~~~~~~~~~~ 233 (250)
T PRK14245 218 FYMGEMVEYDDTKKIF 233 (250)
T ss_pred EECCEEEEECCHHHHh
Confidence 9999999999988774
|
|
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=348.01 Aligned_cols=206 Identities=27% Similarity=0.334 Sum_probs=170.7
Q ss_pred cCCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCCh----hcccceEEEEccCCCCC
Q 001400 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ----ETFARISGYCEQNDIHS 914 (1085)
Q Consensus 839 ~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~----~~~~~~~gy~~Q~~~~~ 914 (1085)
+++..+|+||||++++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.++.. ..+++.+||++|++.++
T Consensus 14 ~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~ 91 (501)
T PRK11288 14 FPGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQ--PDAGSILIDGQEMRFASTTAALAAGVAIIYQELHLV 91 (501)
T ss_pred ECCEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCEECCCCCHHHHHhCCEEEEEechhcc
Confidence 345679999999999999999999999999999999999866 468999999987532 22456799999999889
Q ss_pred CCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Q 001400 915 PGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDE 994 (1085)
Q Consensus 915 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDE 994 (1085)
+.+||.||+.+................+.++++++.+++.+..+.. +..||||||||++|||||+.+|+||||||
T Consensus 92 ~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgGq~qrv~laral~~~p~lllLDE 166 (501)
T PRK11288 92 PEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTP-----LKYLSIGQRQMVEIAKALARNARVIAFDE 166 (501)
T ss_pred CCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCc-----hhhCCHHHHHHHHHHHHHHhCCCEEEEcC
Confidence 9999999998753211111112233345678899999997655543 35799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEecCcEEEEecC
Q 001400 995 PTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGP 1053 (1085)
Q Consensus 995 PtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~ 1053 (1085)
||+|||+.++..+++.|+++.++|.|||++|||++ .+...||++++|++ |+++..++
T Consensus 167 Pt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~-~~~~~~d~i~~l~~-G~i~~~~~ 223 (501)
T PRK11288 167 PTSSLSAREIEQLFRVIRELRAEGRVILYVSHRME-EIFALCDAITVFKD-GRYVATFD 223 (501)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEeecC
Confidence 99999999999999999999878999999999986 47788999999985 67776654
|
|
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-33 Score=345.36 Aligned_cols=104 Identities=23% Similarity=0.387 Sum_probs=88.6
Q ss_pred HHHHHHHcCCCcc-cccccCCCCCCCCCHHHHHHHHHHHHHhc---CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCc
Q 001400 944 VEEVMELVELTSL-SGALIGLPGINGLSTEQRKRLTIAVELVA---NPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGR 1019 (1085)
Q Consensus 944 ~~~~l~~~~l~~~-~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~---~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~ 1019 (1085)
..++++.++|..+ .+.. ...|||||+||+.||++|+. +|++++|||||+|||+.....+++.|+++.++|.
T Consensus 808 ~l~~L~~~gL~~l~l~~~-----~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~G~ 882 (924)
T TIGR00630 808 KLQTLCDVGLGYIKLGQP-----ATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQGN 882 (924)
T ss_pred HHHHHHHcCCCchhhcCc-----cccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCC
Confidence 3567777888643 2332 35799999999999999997 5999999999999999999999999999988899
Q ss_pred eEEEEecCccHHHHHhcCEEEEEe-----cCcEEEEecCC
Q 001400 1020 TIVCTIHQPSIDIFESFDELLFMK-----RGGELIYAGPL 1054 (1085)
Q Consensus 1020 tvi~~~H~~~~~~~~~~d~il~l~-----~gG~~~~~g~~ 1054 (1085)
|||+++|+++ ..+.+|++++|. +||++++.|+.
T Consensus 883 TVIvi~H~~~--~i~~aD~ii~Lgp~~G~~gG~iv~~G~~ 920 (924)
T TIGR00630 883 TVVVIEHNLD--VIKTADYIIDLGPEGGDGGGTIVASGTP 920 (924)
T ss_pred EEEEEeCCHH--HHHhCCEEEEecCCccCCCCEEEEeCCH
Confidence 9999999975 346799999994 57999999875
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-34 Score=312.68 Aligned_cols=204 Identities=27% Similarity=0.402 Sum_probs=171.5
Q ss_pred ecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCC-CCceEEEEccCCCCCCCCCHHH
Q 001400 150 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV-PPRTSAYVSQQDWQVAEMTVRE 228 (1085)
Q Consensus 150 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~-~~~~~~yv~Q~d~~~~~lTV~E 228 (1085)
+|+|+|++|+||++++|+||||||||||+++|+|.++|. +|+|.++|.++.... .++.++|++|++.+++.+||+|
T Consensus 14 ~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~---~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e 90 (235)
T cd03299 14 KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPD---SGKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYK 90 (235)
T ss_pred eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCEEcCcCChhHcCEEEEeecCccCCCccHHH
Confidence 799999999999999999999999999999999998876 999999998876532 2457999999998899999999
Q ss_pred HHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCcccccCc
Q 001400 229 TLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGIS 308 (1085)
Q Consensus 229 ~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LS 308 (1085)
|+.++....+.. . .+ ....+.++++.+||.+..++.+ +.||
T Consensus 91 ~l~~~~~~~~~~--~------------------~~--------------~~~~~~~~l~~~~l~~~~~~~~-----~~LS 131 (235)
T cd03299 91 NIAYGLKKRKVD--K------------------KE--------------IERKVLEIAEMLGIDHLLNRKP-----ETLS 131 (235)
T ss_pred HHHHHHHHcCCC--H------------------HH--------------HHHHHHHHHHHcCChhHHhcCc-----ccCC
Confidence 998764321100 0 00 0123667888999987777655 4699
Q ss_pred hhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEecCCeEEE
Q 001400 309 GGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVY 388 (1085)
Q Consensus 309 GGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~~G~iv~ 388 (1085)
|||||||+||+|++.+|++++|||||+|||+.++.++.+.|++++...+ ++++.++|..+++.+++|++++|++|++++
T Consensus 132 ~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~-~tili~tH~~~~~~~~~d~i~~l~~G~i~~ 210 (235)
T cd03299 132 GGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFG-VTVLHVTHDFEEAWALADKVAIMLNGKLIQ 210 (235)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcC-CEEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999865434 456667788899999999999999999999
Q ss_pred ecChhhHH
Q 001400 389 QGPRVSVL 396 (1085)
Q Consensus 389 ~G~~~~~~ 396 (1085)
.|+.+++.
T Consensus 211 ~~~~~~~~ 218 (235)
T cd03299 211 VGKPEEVF 218 (235)
T ss_pred ecCHHHHH
Confidence 99987664
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-35 Score=317.68 Aligned_cols=196 Identities=26% Similarity=0.414 Sum_probs=153.8
Q ss_pred eEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCCh---hcccceEEEEccCCCCCCCCC
Q 001400 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFARISGYCEQNDIHSPGLT 918 (1085)
Q Consensus 842 ~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gy~~Q~~~~~~~~t 918 (1085)
..+|+|+||++++||+++|+|+||||||||+++|+|... +.+|+|.++|.+... ..+++.++|++|++.+++ .|
T Consensus 15 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~t 91 (237)
T cd03252 15 PVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYV--PENGRVLVDGHDLALADPAWLRRQVGVVLQENVLFN-RS 91 (237)
T ss_pred ccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCCEEEECCeehHhcCHHHHhhcEEEEcCCchhcc-ch
Confidence 468999999999999999999999999999999999876 468999999987532 335667999999987764 69
Q ss_pred HHHHHHHhhhhcCCCcccHHHHH-----HHHHHHHHHc--CCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEE
Q 001400 919 VLESLLFSAWLRLPSEIELETQR-----AFVEEVMELV--ELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVF 991 (1085)
Q Consensus 919 v~e~l~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~ill 991 (1085)
|.||+.+.... ....... ...++.++.+ ++....+. .+.+||+|||||++|||||+.+|++|+
T Consensus 92 v~~nl~~~~~~-----~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~-----~~~~LSgG~~qrv~laral~~~p~lll 161 (237)
T cd03252 92 IRDNIALADPG-----MSMERVIEAAKLAGAHDFISELPEGYDTIVGE-----QGAGLSGGQRQRIAIARALIHNPRILI 161 (237)
T ss_pred HHHHhhccCCC-----CCHHHHHHHHHHcCcHHHHHhCcccccchhhc-----CCCcCCHHHHHHHHHHHHHhhCCCEEE
Confidence 99999764310 1111100 0112223322 22222222 235799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCC
Q 001400 992 MDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1085)
Q Consensus 992 lDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~ 1054 (1085)
|||||+|||+.++..+.+.|+++. +|+|||++||+++. + +.+|++++|++ |++++.|+.
T Consensus 162 lDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~sH~~~~-~-~~~d~v~~l~~-G~i~~~~~~ 220 (237)
T cd03252 162 FDEATSALDYESEHAIMRNMHDIC-AGRTVIIIAHRLST-V-KNADRIIVMEK-GRIVEQGSH 220 (237)
T ss_pred EeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHHH-H-HhCCEEEEEEC-CEEEEEcCH
Confidence 999999999999999999999986 48999999999863 4 56999999985 789988874
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=319.79 Aligned_cols=209 Identities=27% Similarity=0.372 Sum_probs=171.0
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCC---CCceEEEEccCCCCCCCC
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV---PPRTSAYVSQQDWQVAEM 224 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~---~~~~~~yv~Q~d~~~~~l 224 (1085)
+++|+|+|+++++|++++|+||||||||||+++|+|.+++. +|+|.++|.++.... .++.++|++|++.+++.+
T Consensus 24 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 100 (265)
T PRK10575 24 RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPS---EGEILLDAQPLESWSSKAFARKVAYLPQQLPAAEGM 100 (265)
T ss_pred EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC---CCEEEECCEehhhCCHHHHhhheEEeccCCCCCCCc
Confidence 36999999999999999999999999999999999998776 999999998764432 235799999998788889
Q ss_pred CHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCccc
Q 001400 225 TVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEML 304 (1085)
Q Consensus 225 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 304 (1085)
||.||+.++..... . .. + ... ......++.+++.+||++..++.++
T Consensus 101 tv~e~l~~~~~~~~-~-~~-------------~-~~~--------------~~~~~~~~~~l~~~~l~~~~~~~~~---- 146 (265)
T PRK10575 101 TVRELVAIGRYPWH-G-AL-------------G-RFG--------------AADREKVEEAISLVGLKPLAHRLVD---- 146 (265)
T ss_pred cHHHHHHhCccccc-c-cc-------------c-CCC--------------HHHHHHHHHHHHHcCCHHHhcCCcc----
Confidence 99999987532100 0 00 0 000 0012246788999999876676554
Q ss_pred ccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEecCC
Q 001400 305 KGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEG 384 (1085)
Q Consensus 305 ~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~~G 384 (1085)
.|||||||||+||+||+.+|++|+|||||+|||..++..+.+.|+++++.. +++|+.++|+.+++.+++|+|++|++|
T Consensus 147 -~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~-~~tiii~sH~~~~i~~~~d~i~~l~~G 224 (265)
T PRK10575 147 -SLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQER-GLTVIAVLHDINMAARYCDYLVALRGG 224 (265)
T ss_pred -cCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 699999999999999999999999999999999999999999999987543 455666888899999999999999999
Q ss_pred eEEEecChhhH
Q 001400 385 QIVYQGPRVSV 395 (1085)
Q Consensus 385 ~iv~~G~~~~~ 395 (1085)
++++.|+.+++
T Consensus 225 ~i~~~~~~~~~ 235 (265)
T PRK10575 225 EMIAQGTPAEL 235 (265)
T ss_pred eEEEecCHHHh
Confidence 99999988765
|
|
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=320.02 Aligned_cols=216 Identities=22% Similarity=0.301 Sum_probs=172.9
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCC--------CCceEEEEccCCC
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV--------PPRTSAYVSQQDW 219 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~--------~~~~~~yv~Q~d~ 219 (1085)
..+|+|+|+.+++|++++|+||||||||||+++|+|.++|+...+|+|.++|.++.... .++.++|++|++.
T Consensus 17 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~i~~~~q~~~ 96 (262)
T PRK09984 17 HQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKSRANTGYIFQQFN 96 (262)
T ss_pred eEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHHHHHhheEEEccccc
Confidence 35999999999999999999999999999999999998775334699999998764321 1356899999998
Q ss_pred CCCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccc
Q 001400 220 QVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLV 299 (1085)
Q Consensus 220 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~v 299 (1085)
+++.+||+||+.+...... . . ... ..+.. ..+.+.+++++++.+||++..|..+
T Consensus 97 ~~~~~tv~e~l~~~~~~~~--~-~------~~~--~~~~~---------------~~~~~~~~~~~l~~~~l~~~~~~~~ 150 (262)
T PRK09984 97 LVNRLSVLENVLIGALGST--P-F------WRT--CFSWF---------------TREQKQRALQALTRVGMVHFAHQRV 150 (262)
T ss_pred cccCCcHHHHHHhhhcccc--c-c------hhh--hcccc---------------cHHHHHHHHHHHHHcCCHHHHhCCc
Confidence 8999999999987532100 0 0 000 00000 0011234788999999987777655
Q ss_pred cCcccccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEE
Q 001400 300 GDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVI 379 (1085)
Q Consensus 300 g~~~~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii 379 (1085)
..|||||||||+|||||+.+|++|+|||||+|||..++..+.+.|+++++.. +++|+.++|+.+++..++|+|+
T Consensus 151 -----~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~-g~tvii~tH~~~~~~~~~d~i~ 224 (262)
T PRK09984 151 -----STLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQND-GITVVVTLHQVDYALRYCERIV 224 (262)
T ss_pred -----cccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEE
Confidence 4699999999999999999999999999999999999999999999987543 4566668888899999999999
Q ss_pred EecCCeEEEecChhhH
Q 001400 380 LLSEGQIVYQGPRVSV 395 (1085)
Q Consensus 380 ~L~~G~iv~~G~~~~~ 395 (1085)
+|++|++++.|+++++
T Consensus 225 ~l~~g~i~~~g~~~~~ 240 (262)
T PRK09984 225 ALRQGHVFYDGSSQQF 240 (262)
T ss_pred EEECCEEEEeCCHHHh
Confidence 9999999999987654
|
|
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-34 Score=312.15 Aligned_cols=201 Identities=21% Similarity=0.366 Sum_probs=168.6
Q ss_pred cceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCC-CCceEEEEccCCCCCCCCCHHHHHH
Q 001400 153 DLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV-PPRTSAYVSQQDWQVAEMTVRETLD 231 (1085)
Q Consensus 153 ~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~-~~~~~~yv~Q~d~~~~~lTV~E~l~ 231 (1085)
|+|+++++|++++|+|||||||||||++|+|.+++. +|+|.++|.++.... .++.++|++|++.+++.+||.||+.
T Consensus 17 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~ 93 (232)
T PRK10771 17 RFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPA---SGSLTLNGQDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIG 93 (232)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCeecCcCChhhccEEEEecccccccCCcHHHHHh
Confidence 899999999999999999999999999999998876 999999998875432 2357999999998899999999998
Q ss_pred HhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCcccccCchhh
Q 001400 232 FAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQ 311 (1085)
Q Consensus 232 f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGq 311 (1085)
+.... ... .. . .....++++++.+||++..++.+ ..|||||
T Consensus 94 ~~~~~-~~~--~~---~----------------------------~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~ 134 (232)
T PRK10771 94 LGLNP-GLK--LN---A----------------------------AQREKLHAIARQMGIEDLLARLP-----GQLSGGQ 134 (232)
T ss_pred ccccc-ccC--CC---H----------------------------HHHHHHHHHHHHcCcHHHHhCCc-----ccCCHHH
Confidence 75321 000 00 0 01224778899999987777665 4699999
Q ss_pred hhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEecCCeEEEecC
Q 001400 312 KKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQGP 391 (1085)
Q Consensus 312 kqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~~G~iv~~G~ 391 (1085)
||||+||+|++.+|++++|||||+|||..++..+.+.|+++.+.. +++++.++|+..++.+++|++++|++|++++.|+
T Consensus 135 ~qrv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~ 213 (232)
T PRK10771 135 RQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQER-QLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGP 213 (232)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 999999999999999999999999999999999999999987543 4456668888899999999999999999999999
Q ss_pred hhhHH
Q 001400 392 RVSVL 396 (1085)
Q Consensus 392 ~~~~~ 396 (1085)
.+++.
T Consensus 214 ~~~~~ 218 (232)
T PRK10771 214 TDELL 218 (232)
T ss_pred HHHHH
Confidence 87764
|
|
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-34 Score=313.03 Aligned_cols=211 Identities=19% Similarity=0.308 Sum_probs=167.2
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCC--CceeeEEEECCccCCCCC-----CCceEEEEccCCCC
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHH--LQVSGKITYNGHGFKEFV-----PPRTSAYVSQQDWQ 220 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~--~~~~G~i~~~G~~~~~~~-----~~~~~~yv~Q~d~~ 220 (1085)
+.+|+|+|++|++|++++|+|||||||||||++|+|.+++. .+.+|+|.++|.++.... .++.++|++|++.+
T Consensus 17 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~ 96 (251)
T PRK14270 17 KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKPNP 96 (251)
T ss_pred eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHHHHHhheEEEecCCCc
Confidence 35999999999999999999999999999999999987642 125899999999875321 24569999999987
Q ss_pred CCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCccccccccc
Q 001400 221 VAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVG 300 (1085)
Q Consensus 221 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 300 (1085)
++ +||+||+.|.....+.... .....+++.+++.+||........
T Consensus 97 ~~-~tv~enl~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~~- 141 (251)
T PRK14270 97 FP-MSIYDNVAYGPRIHGIKDK---------------------------------KELDKIVEWALKKAALWDEVKDDL- 141 (251)
T ss_pred CC-CcHHHHHHhHHHhcCCCcH---------------------------------HHHHHHHHHHHHHcCCchhhhhHh-
Confidence 77 8999999886433211000 000123566788888742111111
Q ss_pred CcccccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEE
Q 001400 301 DEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVIL 380 (1085)
Q Consensus 301 ~~~~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~ 380 (1085)
+...+.||||||||++||++++.+|++++|||||+|||+.++.++.+.|+++.+ + ++++.++|+..++.+++|++++
T Consensus 142 ~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~--~-~tiiivsH~~~~~~~~~d~v~~ 218 (251)
T PRK14270 142 KKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKK--E-YTIVIVTHNMQQASRVSDYTAF 218 (251)
T ss_pred hCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--C-CeEEEEEcCHHHHHHhcCEEEE
Confidence 234467999999999999999999999999999999999999999999999864 3 4566677888899999999999
Q ss_pred ecCCeEEEecChhhHH
Q 001400 381 LSEGQIVYQGPRVSVL 396 (1085)
Q Consensus 381 L~~G~iv~~G~~~~~~ 396 (1085)
|++|++++.|+.+++.
T Consensus 219 l~~G~i~~~~~~~~~~ 234 (251)
T PRK14270 219 FLMGDLIEFNKTEKIF 234 (251)
T ss_pred EECCeEEEeCCHHHHh
Confidence 9999999999988764
|
|
| >CHL00131 ycf16 sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-34 Score=314.67 Aligned_cols=210 Identities=24% Similarity=0.330 Sum_probs=165.2
Q ss_pred CCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCCh---hcccc-eEEEEccCCCCCC
Q 001400 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFAR-ISGYCEQNDIHSP 915 (1085)
Q Consensus 840 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~---~~~~~-~~gy~~Q~~~~~~ 915 (1085)
++..+|+||||++++||++||+|+||||||||+++|+|.....+.+|+|.++|.++.. ...++ .++|++|++.+++
T Consensus 18 ~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~q~~~~~~ 97 (252)
T CHL00131 18 NENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAHLGIFLAFQYPIEIP 97 (252)
T ss_pred CCEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhheeeEEEEeccccccc
Confidence 3457999999999999999999999999999999999962112568999999987643 12222 4789999999999
Q ss_pred CCCHHHHHHHhhhhcCC----CcccHHHHHHHHHHHHHHcCCC-cccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEE
Q 001400 916 GLTVLESLLFSAWLRLP----SEIELETQRAFVEEVMELVELT-SLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIV 990 (1085)
Q Consensus 916 ~~tv~e~l~~~~~~~~~----~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~il 990 (1085)
.+|+.+++.+....... .........+.+.++++.+++. ...+... ...||+|||||++|||||+.+|+||
T Consensus 98 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~----~~~LSgG~~qrv~la~al~~~p~ll 173 (252)
T CHL00131 98 GVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNV----NEGFSGGEKKRNEILQMALLDSELA 173 (252)
T ss_pred cccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhcccc----ccCCCHHHHHHHHHHHHHHcCCCEE
Confidence 99999998764321110 0111122234567888888886 3444332 1249999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHh-cCEEEEEecCcEEEEecCCC
Q 001400 991 FMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFES-FDELLFMKRGGELIYAGPLG 1055 (1085)
Q Consensus 991 llDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~-~d~il~l~~gG~~~~~g~~~ 1055 (1085)
||||||+|||+.++..+.+.|+++.++|+|||++||+++. +... +|++++|+ +|++++.|+..
T Consensus 174 llDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~-~~~~~~d~i~~l~-~G~i~~~~~~~ 237 (252)
T CHL00131 174 ILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRL-LDYIKPDYVHVMQ-NGKIIKTGDAE 237 (252)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHH-HHhhhCCEEEEEe-CCEEEEecChh
Confidence 9999999999999999999999987779999999999763 4444 79999997 57999988753
|
|
| >TIGR01166 cbiO cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=304.20 Aligned_cols=179 Identities=25% Similarity=0.316 Sum_probs=149.1
Q ss_pred CeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCCh-----hcccceEEEEccCCC-CC
Q 001400 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ-----ETFARISGYCEQNDI-HS 914 (1085)
Q Consensus 841 ~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~-----~~~~~~~gy~~Q~~~-~~ 914 (1085)
+..+|+|+||+|++||++||+|+||||||||+++|+|... +.+|+|.++|.+... ..+++.++|++|++. ..
T Consensus 4 ~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 81 (190)
T TIGR01166 4 GPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLR--PQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQL 81 (190)
T ss_pred ccceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceeEEECCEEccccccchHHHHhhEEEEecChhhcc
Confidence 4569999999999999999999999999999999999876 468999999987531 134567999999973 23
Q ss_pred CCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Q 001400 915 PGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDE 994 (1085)
Q Consensus 915 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDE 994 (1085)
...|++||+.+..... ........+.++++++.+++.+..+... ..||+|||||++|||||+.+|++|+|||
T Consensus 82 ~~~tv~~nl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDE 153 (190)
T TIGR01166 82 FAADVDQDVAFGPLNL---GLSEAEVERRVREALTAVGASGLRERPT-----HCLSGGEKKRVAIAGAVAMRPDVLLLDE 153 (190)
T ss_pred ccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCchhhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 3579999998864322 1122333456788999999977666543 5799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCcc
Q 001400 995 PTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPS 1029 (1085)
Q Consensus 995 PtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~ 1029 (1085)
||+|||+.++..+.+.|+++.++|+|||++||+++
T Consensus 154 Pt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~ 188 (190)
T TIGR01166 154 PTAGLDPAGREQMLAILRRLRAEGMTVVISTHDVD 188 (190)
T ss_pred CcccCCHHHHHHHHHHHHHHHHcCCEEEEEeeccc
Confidence 99999999999999999999777999999999975
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. |
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-35 Score=364.98 Aligned_cols=206 Identities=23% Similarity=0.330 Sum_probs=164.6
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCC---CCceEEEEccCCCCCCCC
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV---PPRTSAYVSQQDWQVAEM 224 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~---~~~~~~yv~Q~d~~~~~l 224 (1085)
+++|+|+|++|+||+.++|+||||||||||+++|+|.++|. +|+|.+||.++.+.. .++.++||+|++.+|. .
T Consensus 492 ~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~---~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~-g 567 (710)
T TIGR03796 492 PPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPW---SGEILFDGIPREEIPREVLANSVAMVDQDIFLFE-G 567 (710)
T ss_pred CCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEeHHHCCHHHHHhheeEEecCChhhh-c
Confidence 46999999999999999999999999999999999999886 999999999987664 3678999999998775 5
Q ss_pred CHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCccc
Q 001400 225 TVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEML 304 (1085)
Q Consensus 225 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 304 (1085)
|++|||.++.. ....+.+.++++ ..+ .++.+ -.|+...||.+|+. .
T Consensus 568 Ti~eNi~l~~~----~~~~~~i~~al~---~~~------------------------l~~~i--~~lp~gl~t~i~e~-G 613 (710)
T TIGR03796 568 TVRDNLTLWDP----TIPDADLVRACK---DAA------------------------IHDVI--TSRPGGYDAELAEG-G 613 (710)
T ss_pred cHHHHhhCCCC----CCCHHHHHHHHH---HhC------------------------CHHHH--HhCcCcccceeccC-C
Confidence 99999987421 111111111110 000 11111 23667889999975 4
Q ss_pred ccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEecCC
Q 001400 305 KGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEG 384 (1085)
Q Consensus 305 ~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~~G 384 (1085)
.+||||||||++||||++++|++|+||||||+||+.++..|.+.|++ .++|+|+ ++|..+ ....+|+|++|++|
T Consensus 614 ~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~----~~~T~Ii-itHrl~-~i~~~D~Iivl~~G 687 (710)
T TIGR03796 614 ANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR----RGCTCII-VAHRLS-TIRDCDEIIVLERG 687 (710)
T ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh----cCCEEEE-EecCHH-HHHhCCEEEEEeCC
Confidence 68999999999999999999999999999999999999999999985 2455555 556554 45669999999999
Q ss_pred eEEEecChhhHHH
Q 001400 385 QIVYQGPRVSVLD 397 (1085)
Q Consensus 385 ~iv~~G~~~~~~~ 397 (1085)
+++..|+++++++
T Consensus 688 ~i~~~G~~~~Ll~ 700 (710)
T TIGR03796 688 KVVQRGTHEELWA 700 (710)
T ss_pred EEEEecCHHHHHH
Confidence 9999999999864
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-34 Score=316.47 Aligned_cols=212 Identities=22% Similarity=0.311 Sum_probs=168.6
Q ss_pred eecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCC--CceeeEEEECCccCCC--C---CCCceEEEEccCCCCC
Q 001400 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHH--LQVSGKITYNGHGFKE--F---VPPRTSAYVSQQDWQV 221 (1085)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~--~~~~G~i~~~G~~~~~--~---~~~~~~~yv~Q~d~~~ 221 (1085)
++|+|+|++|++||+++|+||||||||||+++|+|.++|. .+.+|+|+++|+++.. . ..++.++|++|++.++
T Consensus 18 ~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~ 97 (253)
T PRK14267 18 HVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMVFQYPNPF 97 (253)
T ss_pred eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHHHhhceeEEecCCccC
Confidence 5999999999999999999999999999999999998762 1348999999998752 1 1245799999999889
Q ss_pred CCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccC
Q 001400 222 AEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGD 301 (1085)
Q Consensus 222 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 301 (1085)
+.+||.||+.++....+.....+ .....++++++.+||........ +
T Consensus 98 ~~~tv~enl~~~~~~~~~~~~~~--------------------------------~~~~~~~~~l~~~~l~~~~~~~~-~ 144 (253)
T PRK14267 98 PHLTIYDNVAIGVKLNGLVKSKK--------------------------------ELDERVEWALKKAALWDEVKDRL-N 144 (253)
T ss_pred CCCcHHHHHHHHHHhcCccCCHH--------------------------------HHHHHHHHHHHHcCCccchhhhh-c
Confidence 99999999987643221100000 00123667788888743211111 2
Q ss_pred cccccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEe
Q 001400 302 EMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILL 381 (1085)
Q Consensus 302 ~~~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L 381 (1085)
.....|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++++ + .+|+.++|+.+++..++|+|++|
T Consensus 145 ~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~-~tiii~sH~~~~~~~~~d~i~~l 221 (253)
T PRK14267 145 DYPSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK--E-YTIVLVTHSPAQAARVSDYVAFL 221 (253)
T ss_pred cChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh--C-CEEEEEECCHHHHHhhCCEEEEE
Confidence 34567999999999999999999999999999999999999999999999864 3 45666888889999999999999
Q ss_pred cCCeEEEecChhhHH
Q 001400 382 SEGQIVYQGPRVSVL 396 (1085)
Q Consensus 382 ~~G~iv~~G~~~~~~ 396 (1085)
++|++++.|+.+++.
T Consensus 222 ~~G~i~~~~~~~~~~ 236 (253)
T PRK14267 222 YLGKLIEVGPTRKVF 236 (253)
T ss_pred ECCEEEEeCCHHHHH
Confidence 999999999987764
|
|
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-34 Score=317.65 Aligned_cols=208 Identities=21% Similarity=0.233 Sum_probs=164.0
Q ss_pred CCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCC---CeeeeEEEEcCccCC-----hhcccceEEEEccCC
Q 001400 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTG---GIIEGDIYISGYPKR-----QETFARISGYCEQND 911 (1085)
Q Consensus 840 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~---~~~~G~i~i~g~~~~-----~~~~~~~~gy~~Q~~ 911 (1085)
++..+|+|+||+|++||++||+|+||||||||+++|+|.... .+.+|+|.++|.++. ...+++.+||++|++
T Consensus 21 ~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~ 100 (264)
T PRK14243 21 GSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVEVRRRIGMVFQKP 100 (264)
T ss_pred CCEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChHHHhhhEEEEccCC
Confidence 445799999999999999999999999999999999996431 125799999998753 223466799999998
Q ss_pred CCCCCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEE
Q 001400 912 IHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVF 991 (1085)
Q Consensus 912 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~ill 991 (1085)
.+++ .|+.||+.+....+. .. ....+.++++++.+++....+.... ..+..||+|||||++|||||+.+|+|||
T Consensus 101 ~~~~-~tv~enl~~~~~~~~---~~-~~~~~~~~~~l~~~~l~~~l~~~~~-~~~~~LSgGq~qrv~laral~~~p~lll 174 (264)
T PRK14243 101 NPFP-KSIYDNIAYGARING---YK-GDMDELVERSLRQAALWDEVKDKLK-QSGLSLSGGQQQRLCIARAIAVQPEVIL 174 (264)
T ss_pred cccc-ccHHHHHHhhhhhcC---cc-hHHHHHHHHHHHHhCchhhHHHHhc-CCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 8877 499999987643221 11 1223445667777776421111111 1235799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEec--------CcEEEEecCCC
Q 001400 992 MDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKR--------GGELIYAGPLG 1055 (1085)
Q Consensus 992 lDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~--------gG~~~~~g~~~ 1055 (1085)
|||||+|||+.++..+++.|+++.+ ++|||++||+++ ++.+.||++++|++ .|++++.|+..
T Consensus 175 LDEPt~~LD~~~~~~l~~~L~~~~~-~~tvi~vtH~~~-~~~~~~d~v~~l~~~~~~~~~~~g~i~~~~~~~ 244 (264)
T PRK14243 175 MDEPCSALDPISTLRIEELMHELKE-QYTIIIVTHNMQ-QAARVSDMTAFFNVELTEGGGRYGYLVEFDRTE 244 (264)
T ss_pred EeCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH-HHHHhCCEEEEEecccccccccCceEEEeCCHH
Confidence 9999999999999999999999865 589999999987 57889999999972 57999998753
|
|
| >COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-35 Score=305.16 Aligned_cols=195 Identities=27% Similarity=0.422 Sum_probs=170.7
Q ss_pred cceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCC-----C--CCceEEEEccCCCCCCCCC
Q 001400 153 DLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEF-----V--PPRTSAYVSQQDWQVAEMT 225 (1085)
Q Consensus 153 ~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~-----~--~~~~~~yv~Q~d~~~~~lT 225 (1085)
++++..+.-.+|||-|+||||||||+|+|+|+..|+ +|.|.+||..+.+. . .+|.+|||+|+..+||++|
T Consensus 16 ~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPd---eG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~t 92 (352)
T COG4148 16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTRPD---EGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYT 92 (352)
T ss_pred EEeccCCCCceEEEecCCCCChhhHHHHHhccCCcc---ccEEEECCEEeecccCCcccChhhheeeeEeeccccccceE
Confidence 567777775899999999999999999999999987 99999999865332 1 2589999999999999999
Q ss_pred HHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCcccc
Q 001400 226 VRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLK 305 (1085)
Q Consensus 226 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 305 (1085)
|+-||.|+.... .....|++...||++|..+.+ +.
T Consensus 93 VrgNL~YG~~~~----------------------------------------~~~~fd~iv~lLGI~hLL~R~-----P~ 127 (352)
T COG4148 93 VRGNLRYGMWKS----------------------------------------MRAQFDQLVALLGIEHLLDRY-----PG 127 (352)
T ss_pred Eecchhhhhccc----------------------------------------chHhHHHHHHHhCcHHHHhhC-----CC
Confidence 999999974321 011267889999999988754 45
Q ss_pred cCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEecCCe
Q 001400 306 GISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQ 385 (1085)
Q Consensus 306 ~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~~G~ 385 (1085)
.|||||||||+|||||++.|++|+||||.+.||-....+|+-+|.++.++. +.-|+.++|...|+..++|+|++|++|+
T Consensus 128 ~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~EilpylERL~~e~-~IPIlYVSHS~~Ev~RLAd~vV~le~Gk 206 (352)
T COG4148 128 TLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEI-NIPILYVSHSLDEVLRLADRVVVLENGK 206 (352)
T ss_pred ccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchhhHHHHHHHHHHHhc-CCCEEEEecCHHHHHhhhheEEEecCCe
Confidence 799999999999999999999999999999999999999999999998875 4556778999999999999999999999
Q ss_pred EEEecChhhHH
Q 001400 386 IVYQGPRVSVL 396 (1085)
Q Consensus 386 iv~~G~~~~~~ 396 (1085)
+...|+.+++.
T Consensus 207 V~A~g~~e~v~ 217 (352)
T COG4148 207 VKASGPLEEVW 217 (352)
T ss_pred EEecCcHHHHh
Confidence 99999998875
|
|
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-32 Score=344.19 Aligned_cols=209 Identities=30% Similarity=0.422 Sum_probs=171.7
Q ss_pred eeeeccceeeeeccccccccccccCCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccC
Q 001400 816 SMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPK 895 (1085)
Q Consensus 816 ~~~~~~~~y~v~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 895 (1085)
.+.++|++|.++. .++.+|+|+|++|++||++||+|+||||||||+++|+|..+ +.+|+|.+||.++
T Consensus 477 ~I~~~~vsf~y~~-----------~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~--p~~G~I~idg~~i 543 (710)
T TIGR03796 477 YVELRNITFGYSP-----------LEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQ--PWSGEILFDGIPR 543 (710)
T ss_pred eEEEEEEEEecCC-----------CCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEeH
Confidence 5777888776631 23469999999999999999999999999999999999876 5689999999986
Q ss_pred Ch---hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCccc-------ccccCCCC
Q 001400 896 RQ---ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLS-------GALIGLPG 965 (1085)
Q Consensus 896 ~~---~~~~~~~gy~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~ 965 (1085)
++ ..+++.+|||+|++.++.+ |++||+.++. + +.+ ++.++++++..++.+.. +..++..
T Consensus 544 ~~~~~~~lr~~i~~v~Q~~~lf~g-Ti~eNi~l~~----~-~~~----~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~- 612 (710)
T TIGR03796 544 EEIPREVLANSVAMVDQDIFLFEG-TVRDNLTLWD----P-TIP----DADLVRACKDAAIHDVITSRPGGYDAELAEG- 612 (710)
T ss_pred HHCCHHHHHhheeEEecCChhhhc-cHHHHhhCCC----C-CCC----HHHHHHHHHHhCCHHHHHhCcCcccceeccC-
Confidence 43 4578899999999998854 9999998641 1 111 23466777777765432 3334333
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEecC
Q 001400 966 INGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 1045 (1085)
Q Consensus 966 ~~~LS~Gqrqrl~iA~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~g 1045 (1085)
+.+||||||||++|||||+++|+||+||||||+||+.+++.+++.|++ .++|+|++||+++ ....+|++++|++
T Consensus 613 G~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~---~~~T~IiitHrl~--~i~~~D~Iivl~~- 686 (710)
T TIGR03796 613 GANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR---RGCTCIIVAHRLS--TIRDCDEIIVLER- 686 (710)
T ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh---cCCEEEEEecCHH--HHHhCCEEEEEeC-
Confidence 357999999999999999999999999999999999999999999986 4899999999975 5577999999985
Q ss_pred cEEEEecCC
Q 001400 1046 GELIYAGPL 1054 (1085)
Q Consensus 1046 G~~~~~g~~ 1054 (1085)
|+++..|+.
T Consensus 687 G~i~~~G~~ 695 (710)
T TIGR03796 687 GKVVQRGTH 695 (710)
T ss_pred CEEEEecCH
Confidence 799998874
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-34 Score=318.61 Aligned_cols=207 Identities=22% Similarity=0.264 Sum_probs=169.7
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCC---CCceEEEEccCCC--CCC
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV---PPRTSAYVSQQDW--QVA 222 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~---~~~~~~yv~Q~d~--~~~ 222 (1085)
+++|+|+|++|++|++++|+|||||||||||++|+|.++|. +|+|.++|.++.... .++.++|++|++. +++
T Consensus 26 ~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 102 (267)
T PRK15112 26 VEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPT---SGELLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLNP 102 (267)
T ss_pred cceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCC---CCEEEECCEECCCCchhhHhccEEEEecCchhhcCc
Confidence 46999999999999999999999999999999999999876 999999998875321 1346999999974 567
Q ss_pred CCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCc-ccccccccC
Q 001400 223 EMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLD-TCADTLVGD 301 (1085)
Q Consensus 223 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~vg~ 301 (1085)
.+||.+++.+..+...... . ......++.+++.+||. ...++.+
T Consensus 103 ~~tv~~~l~~~~~~~~~~~---------~------------------------~~~~~~~~~~l~~~~l~~~~~~~~~-- 147 (267)
T PRK15112 103 RQRISQILDFPLRLNTDLE---------P------------------------EQREKQIIETLRQVGLLPDHASYYP-- 147 (267)
T ss_pred chhHHHHHHHHHHhccCCC---------H------------------------HHHHHHHHHHHHHcCCChHHHhcCc--
Confidence 8899999987543211000 0 00112367889999994 5555443
Q ss_pred cccccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEe
Q 001400 302 EMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILL 381 (1085)
Q Consensus 302 ~~~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L 381 (1085)
..|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++++.. +++|+.++|+.+++..+||++++|
T Consensus 148 ---~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~-g~tviivsH~~~~~~~~~d~i~~l 223 (267)
T PRK15112 148 ---HMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQ-GISYIYVTQHLGMMKHISDQVLVM 223 (267)
T ss_pred ---hhcCHHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHc-CcEEEEEeCCHHHHHHhcCEEEEE
Confidence 4699999999999999999999999999999999999999999999987533 455666888899999999999999
Q ss_pred cCCeEEEecChhhHH
Q 001400 382 SEGQIVYQGPRVSVL 396 (1085)
Q Consensus 382 ~~G~iv~~G~~~~~~ 396 (1085)
++|++++.|+.+++.
T Consensus 224 ~~G~i~~~~~~~~~~ 238 (267)
T PRK15112 224 HQGEVVERGSTADVL 238 (267)
T ss_pred ECCEEEecCCHHHHh
Confidence 999999999887764
|
|
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=353.29 Aligned_cols=200 Identities=28% Similarity=0.439 Sum_probs=165.2
Q ss_pred eecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCC---CceEEEEccCCCCCCCCC
Q 001400 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP---PRTSAYVSQQDWQVAEMT 225 (1085)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~lT 225 (1085)
++|+|+|++++||+.++|+||||||||||+++|+|.++|+ +|+|++||.++.+... ++.++||+|++.+|+ .|
T Consensus 354 ~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~t 429 (574)
T PRK11160 354 PVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQ---QGEILLNGQPIADYSEAALRQAISVVSQRVHLFS-AT 429 (574)
T ss_pred cceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEhhhCCHHHHHhheeEEcccchhhc-cc
Confidence 5999999999999999999999999999999999999886 9999999999877643 567999999998776 59
Q ss_pred HHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCC------cccccccc
Q 001400 226 VRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGL------DTCADTLV 299 (1085)
Q Consensus 226 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL------~~~~dt~v 299 (1085)
++|||.++.. .... ..+.++++..|+ +++.||.|
T Consensus 430 i~~Ni~~~~~----~~~~------------------------------------~~i~~al~~~~l~~~i~~p~GldT~v 469 (574)
T PRK11160 430 LRDNLLLAAP----NASD------------------------------------EALIEVLQQVGLEKLLEDDKGLNAWL 469 (574)
T ss_pred HHHHhhcCCC----ccCH------------------------------------HHHHHHHHHcCCHHHHcCccccCchh
Confidence 9999987531 0000 012233333333 56789999
Q ss_pred cCcccccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEE
Q 001400 300 GDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVI 379 (1085)
Q Consensus 300 g~~~~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii 379 (1085)
|+. ...||||||||++||||++.+|++|+||||||+||+.++..|.+.|++..+ ++|+|+ ++|..+.+ ..+|+|+
T Consensus 470 ge~-g~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~~--~~tvii-itHr~~~~-~~~d~i~ 544 (574)
T PRK11160 470 GEG-GRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQ--NKTVLM-ITHRLTGL-EQFDRIC 544 (574)
T ss_pred cCC-CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC--CCEEEE-EecChhHH-HhCCEEE
Confidence 975 567999999999999999999999999999999999999999999998753 456555 55555444 5699999
Q ss_pred EecCCeEEEecChhhHHH
Q 001400 380 LLSEGQIVYQGPRVSVLD 397 (1085)
Q Consensus 380 ~L~~G~iv~~G~~~~~~~ 397 (1085)
+|++|++++.|+++++++
T Consensus 545 ~l~~G~i~~~g~~~~l~~ 562 (574)
T PRK11160 545 VMDNGQIIEQGTHQELLA 562 (574)
T ss_pred EEeCCeEEEeCCHHHHHh
Confidence 999999999999998864
|
|
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-34 Score=317.92 Aligned_cols=210 Identities=24% Similarity=0.356 Sum_probs=171.9
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCC---CceEEEEccCCCCCCCC
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP---PRTSAYVSQQDWQVAEM 224 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 224 (1085)
..+|+|+|+++++|++++|+|||||||||||++|+|.+++. +|+|.++|+++..... ++.++|++|++..++.+
T Consensus 20 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 96 (265)
T PRK10253 20 YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPA---HGHVWLDGEHIQHYASKEVARRIGLLAQNATTPGDI 96 (265)
T ss_pred EEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCC---CcEEEECCEEhhhCCHHHHhhheEEeeccCcCCCCC
Confidence 36999999999999999999999999999999999998876 9999999988754321 35699999999888889
Q ss_pred CHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCccc
Q 001400 225 TVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEML 304 (1085)
Q Consensus 225 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 304 (1085)
||+||+.++..-.. . ... ..+ ......++++++.+||++..++.+
T Consensus 97 tv~~~~~~~~~~~~-~-~~~-------------~~~---------------~~~~~~~~~~l~~~~l~~~~~~~~----- 141 (265)
T PRK10253 97 TVQELVARGRYPHQ-P-LFT-------------RWR---------------KEDEEAVTKAMQATGITHLADQSV----- 141 (265)
T ss_pred cHHHHHHhCccccc-c-ccc-------------CCC---------------HHHHHHHHHHHHHcCCHHHhcCCc-----
Confidence 99999987521000 0 000 000 001224678899999987666554
Q ss_pred ccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEecCC
Q 001400 305 KGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEG 384 (1085)
Q Consensus 305 ~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~~G 384 (1085)
+.||||||||++||||++.+|++++|||||+|||+.++..+.+.|+++++.. +++|+.++|+..++.+++|++++|++|
T Consensus 142 ~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~-~~tiii~tH~~~~~~~~~d~i~~l~~G 220 (265)
T PRK10253 142 DTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREK-GYTLAAVLHDLNQACRYASHLIALREG 220 (265)
T ss_pred ccCChHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 5699999999999999999999999999999999999999999999987533 455666888889999999999999999
Q ss_pred eEEEecChhhHH
Q 001400 385 QIVYQGPRVSVL 396 (1085)
Q Consensus 385 ~iv~~G~~~~~~ 396 (1085)
++++.|+.+++.
T Consensus 221 ~i~~~g~~~~~~ 232 (265)
T PRK10253 221 KIVAQGAPKEIV 232 (265)
T ss_pred EEEEeCCHHHHh
Confidence 999999987764
|
|
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-35 Score=311.36 Aligned_cols=195 Identities=24% Similarity=0.356 Sum_probs=162.3
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCC-----CCCceEEEEccCCCCCC
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEF-----VPPRTSAYVSQQDWQVA 222 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~-----~~~~~~~yv~Q~d~~~~ 222 (1085)
..+|+++|+.++||++++|+|||||||||||++|+|.+++. +|+|.++|+++... ..++.++|++|++.+++
T Consensus 13 ~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 89 (213)
T cd03262 13 FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPD---SGTIIIDGLKLTDDKKNINELRQKVGMVFQQFNLFP 89 (213)
T ss_pred eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCccchhHHHHHhcceEEecccccCC
Confidence 36999999999999999999999999999999999998876 99999999877421 12467999999998888
Q ss_pred CCCHHHHHHHhhh-hcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccC
Q 001400 223 EMTVRETLDFAGQ-CQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGD 301 (1085)
Q Consensus 223 ~lTV~E~l~f~~~-~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 301 (1085)
.+||+||+.++.. ..+.. . .+....++++++.+||++..++.+
T Consensus 90 ~~t~~e~l~~~~~~~~~~~------~----------------------------~~~~~~~~~~l~~~~l~~~~~~~~-- 133 (213)
T cd03262 90 HLTVLENITLAPIKVKGMS------K----------------------------AEAEERALELLEKVGLADKADAYP-- 133 (213)
T ss_pred CCcHHHHHHhHHHHhcCCC------H----------------------------HHHHHHHHHHHHHcCCHhHhhhCc--
Confidence 9999999987532 11100 0 001123677889999987666654
Q ss_pred cccccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEe
Q 001400 302 EMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILL 381 (1085)
Q Consensus 302 ~~~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L 381 (1085)
..|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++++. +++|+.++|+..++.+++|++++|
T Consensus 134 ---~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~--~~tvi~~sh~~~~~~~~~d~i~~l 208 (213)
T cd03262 134 ---AQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEE--GMTMVVVTHEMGFAREVADRVIFM 208 (213)
T ss_pred ---cccCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHhCCEEEEE
Confidence 469999999999999999999999999999999999999999999998752 445666889999999999999999
Q ss_pred cCCeE
Q 001400 382 SEGQI 386 (1085)
Q Consensus 382 ~~G~i 386 (1085)
++|++
T Consensus 209 ~~g~i 213 (213)
T cd03262 209 DDGRI 213 (213)
T ss_pred eCCcC
Confidence 99974
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=322.65 Aligned_cols=235 Identities=27% Similarity=0.393 Sum_probs=186.9
Q ss_pred hcCCCCCCcEEEEeeeEEEEEEecCCCCCCChhhHHHHHHHHHHHHHhHhcCCCcceeecccceeeEeCCeEEEEeCCCC
Q 001400 92 AVDLELPKIEVRFQNLTVESFVHLGSRALPTIPNFIFNMTEALLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPS 171 (1085)
Q Consensus 92 ~~~~~~~~~~v~~~~l~v~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~G 171 (1085)
+..++-|+-.+..|++++- + ...++++|+|+||.+.+|+-++|+||||
T Consensus 325 ~m~LP~P~g~L~Ve~l~~~-------------------------------P-Pg~~~pil~~isF~l~~G~~lgIIGPSg 372 (580)
T COG4618 325 RMPLPAPQGALSVERLTAA-------------------------------P-PGQKKPILKGISFALQAGEALGIIGPSG 372 (580)
T ss_pred CCCCCCCCceeeEeeeeec-------------------------------C-CCCCCcceecceeEecCCceEEEECCCC
Confidence 4556666778888888851 1 1234689999999999999999999999
Q ss_pred CChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCC---CceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCchhhhHH
Q 001400 172 SGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP---PRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITE 248 (1085)
Q Consensus 172 sGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~ 248 (1085)
||||||.++|.|..+|. +|.|.++|.+++...+ .+.+||.||+--+|+ .||.|||. |+.. ...-+.+.+
T Consensus 373 SGKSTLaR~lvG~w~p~---~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~-GTIaeNIa---Rf~~-~~d~~kIie 444 (580)
T COG4618 373 SGKSTLARLLVGIWPPT---SGSVRLDGADLRQWDREQLGRHIGYLPQDVELFD-GTIAENIA---RFGE-EADPEKVIE 444 (580)
T ss_pred ccHHHHHHHHHcccccC---CCcEEecchhhhcCCHHHhccccCcCcccceecC-CcHHHHHH---hccc-cCCHHHHHH
Confidence 99999999999988775 9999999999877654 478999999988777 49999994 2211 111111222
Q ss_pred HHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCcccccCchhhhhHHHHHHHHhCCCcEe
Q 001400 249 LARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVL 328 (1085)
Q Consensus 249 ~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqkqRvsia~al~~~p~vl 328 (1085)
.++ ..+ +.++ ++.|++.+||.||+. ..+||||||||+++|||++++|.++
T Consensus 445 AA~---------------------lAg------vHel--Il~lP~GYdT~iG~~-G~~LSgGQRQRIaLARAlYG~P~lv 494 (580)
T COG4618 445 AAR---------------------LAG------VHEL--ILRLPQGYDTRIGEG-GATLSGGQRQRIALARALYGDPFLV 494 (580)
T ss_pred HHH---------------------HcC------hHHH--HHhCcCCccCccCCC-CCCCCchHHHHHHHHHHHcCCCcEE
Confidence 221 111 1222 567999999999975 4589999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEecCCeEEEecChhhHHHHH
Q 001400 329 FMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVLDFF 399 (1085)
Q Consensus 329 llDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~~G~iv~~G~~~~~~~~f 399 (1085)
+||||-|+||+.....+.+.+.+... .|+++|+ ++| .+.+...+|+|++|++|++..+|++++++...
T Consensus 495 VLDEPNsNLD~~GE~AL~~Ai~~~k~-rG~~vvv-iaH-RPs~L~~~Dkilvl~~G~~~~FG~r~eVLa~~ 562 (580)
T COG4618 495 VLDEPNSNLDSEGEAALAAAILAAKA-RGGTVVV-IAH-RPSALASVDKILVLQDGRIAAFGPREEVLAKV 562 (580)
T ss_pred EecCCCCCcchhHHHHHHHHHHHHHH-cCCEEEE-Eec-CHHHHhhcceeeeecCChHHhcCCHHHHHHHh
Confidence 99999999999999999999998765 3555555 433 56789999999999999999999999998754
|
|
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-34 Score=307.25 Aligned_cols=199 Identities=21% Similarity=0.310 Sum_probs=166.0
Q ss_pred ecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCC-CCceEEEEccCCCCCCCCCHHH
Q 001400 150 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV-PPRTSAYVSQQDWQVAEMTVRE 228 (1085)
Q Consensus 150 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~-~~~~~~yv~Q~d~~~~~lTV~E 228 (1085)
+++|+|+++++|++++|+||||||||||+++|+|.++++ +|+|.++|+++.... .++.++|++|++.+++.+|++|
T Consensus 13 ~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~e 89 (213)
T TIGR01277 13 LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPA---SGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQ 89 (213)
T ss_pred cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEcccCChhccceEEEeccCccCCCCcHHH
Confidence 467999999999999999999999999999999998876 999999999875432 3467999999999899999999
Q ss_pred HHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCcccccCc
Q 001400 229 TLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGIS 308 (1085)
Q Consensus 229 ~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LS 308 (1085)
|+.+...... ... ...+..++++++.+||++..++.+ +.||
T Consensus 90 n~~~~~~~~~-~~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 130 (213)
T TIGR01277 90 NIGLGLHPGL-KLN---------------------------------AEQQEKVVDAAQQVGIADYLDRLP-----EQLS 130 (213)
T ss_pred HHHhHhhccC-Ccc---------------------------------HHHHHHHHHHHHHcCcHHHhhCCc-----ccCC
Confidence 9986432100 000 001223677899999987666654 4699
Q ss_pred hhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEecCCeEEE
Q 001400 309 GGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVY 388 (1085)
Q Consensus 309 GGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~~G~iv~ 388 (1085)
||||||++||+|++.+|++++|||||+|||..++..+.+.|+++.+.. +++|+.++|+.+++.+++|++++|++|+++.
T Consensus 131 ~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~-~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~ 209 (213)
T TIGR01277 131 GGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSER-QRTLLMVTHHLSDARAIASQIAVVSQGKIKV 209 (213)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHhhcCeEEEEECCeEEE
Confidence 999999999999999999999999999999999999999999987532 4566668888899999999999999999998
Q ss_pred ecC
Q 001400 389 QGP 391 (1085)
Q Consensus 389 ~G~ 391 (1085)
.|.
T Consensus 210 ~~~ 212 (213)
T TIGR01277 210 VSD 212 (213)
T ss_pred ecC
Confidence 874
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=300.89 Aligned_cols=161 Identities=30% Similarity=0.444 Sum_probs=143.7
Q ss_pred CCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCCh-----hcccceEEEEccCCCCC
Q 001400 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ-----ETFARISGYCEQNDIHS 914 (1085)
Q Consensus 840 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~-----~~~~~~~gy~~Q~~~~~ 914 (1085)
++..+++|+||++++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.+... ..+++.++|++|++.++
T Consensus 11 ~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 88 (178)
T cd03229 11 GQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEE--PDSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALF 88 (178)
T ss_pred CCeEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEccccchhHHHHhhcEEEEecCCccC
Confidence 44579999999999999999999999999999999999866 468999999987532 34567899999999888
Q ss_pred CCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Q 001400 915 PGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDE 994 (1085)
Q Consensus 915 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDE 994 (1085)
+..|++||+.+. ||+|||||++|||||+.+|++++|||
T Consensus 89 ~~~t~~~~l~~~------------------------------------------lS~G~~qr~~la~al~~~p~llilDE 126 (178)
T cd03229 89 PHLTVLENIALG------------------------------------------LSGGQQQRVALARALAMDPDVLLLDE 126 (178)
T ss_pred CCCCHHHheeec------------------------------------------CCHHHHHHHHHHHHHHCCCCEEEEeC
Confidence 889999987531 89999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHC-CceEEEEecCccHHHHHhcCEEEEEecC
Q 001400 995 PTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRG 1045 (1085)
Q Consensus 995 PtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~il~l~~g 1045 (1085)
||+|||+.++..+++.|++++++ |+|+|++||+++ .+.+.+|++++|++|
T Consensus 127 P~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~g 177 (178)
T cd03229 127 PTSALDPITRREVRALLKSLQAQLGITVVLVTHDLD-EAARLADRVVVLRDG 177 (178)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEeCC
Confidence 99999999999999999999876 899999999986 466689999999864
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14264 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-34 Score=322.02 Aligned_cols=211 Identities=24% Similarity=0.315 Sum_probs=164.6
Q ss_pred CCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCC---CeeeeEEEEcCccCCh-----hcccceEEEEccCC
Q 001400 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTG---GIIEGDIYISGYPKRQ-----ETFARISGYCEQND 911 (1085)
Q Consensus 840 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~---~~~~G~i~i~g~~~~~-----~~~~~~~gy~~Q~~ 911 (1085)
++..+|+++||+|++||+++|+|+||||||||+++|+|...+ .+.+|+|.++|.++.. ...++.++|++|++
T Consensus 56 ~~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~~~~~~~~i~~v~q~~ 135 (305)
T PRK14264 56 GDDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNLVELRKRVGMVFQSP 135 (305)
T ss_pred CCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccccHHHHhhceEEEccCC
Confidence 446799999999999999999999999999999999997531 2468999999987532 23456799999998
Q ss_pred CCCCCCCHHHHHHHhhhhcCCC---------ccc-HHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHH
Q 001400 912 IHSPGLTVLESLLFSAWLRLPS---------EIE-LETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAV 981 (1085)
Q Consensus 912 ~~~~~~tv~e~l~~~~~~~~~~---------~~~-~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~ 981 (1085)
.+++ .|++||+.+....+... ... .....+.++++++.+++.+....... ..+.+||+|||||++|||
T Consensus 136 ~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~~LSgGq~qrv~LAr 213 (305)
T PRK14264 136 NPFP-KSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLD-DNALGLSGGQQQRLCIAR 213 (305)
T ss_pred cccc-ccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhc-CccccCCHHHHHHHHHHH
Confidence 8777 49999998764321100 011 12234567788888887421111111 123579999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEE-EEecCcEEEEecCCC
Q 001400 982 ELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELL-FMKRGGELIYAGPLG 1055 (1085)
Q Consensus 982 aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il-~l~~gG~~~~~g~~~ 1055 (1085)
||+.+|+||||||||+|||+.++..+++.|+++++ +.|||++||+++ .+.+.+|+++ +|+ .|++++.|+..
T Consensus 214 aL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~-~i~~~~d~i~~~l~-~G~i~~~g~~~ 285 (305)
T PRK14264 214 CLAVDPEVILMDEPASALDPIATSKIEDLIEELAE-EYTVVVVTHNMQ-QAARISDQTAVFLT-GGELVEYDDTD 285 (305)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHH-HHHHhcCEEEEEec-CCEEEEeCCHH
Confidence 99999999999999999999999999999999875 589999999986 4678899975 566 57999988754
|
|
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-34 Score=361.28 Aligned_cols=208 Identities=25% Similarity=0.399 Sum_probs=167.0
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCC---CceEEEEccCCCCCCCC
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP---PRTSAYVSQQDWQVAEM 224 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 224 (1085)
.++|+|+|++|+||+.++|+||||||||||+++|+|.++|. +|+|.+||.++++... ++.++||+|++.+|. .
T Consensus 478 ~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~---~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~-~ 553 (694)
T TIGR03375 478 TPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPT---EGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFY-G 553 (694)
T ss_pred ccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEhhhCCHHHHHhccEEECCChhhhh-h
Confidence 35999999999999999999999999999999999999886 9999999999877643 578999999998776 5
Q ss_pred CHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCccc
Q 001400 225 TVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEML 304 (1085)
Q Consensus 225 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 304 (1085)
|++|||.++.. ....+.+.+.+ +.. + .++.+ -.|++..||.+|+. .
T Consensus 554 TI~eNi~~~~~----~~~~~~i~~a~------------------~~~---~------l~~~i--~~lp~gl~T~i~e~-G 599 (694)
T TIGR03375 554 TLRDNIALGAP----YADDEEILRAA------------------ELA---G------VTEFV--RRHPDGLDMQIGER-G 599 (694)
T ss_pred hHHHHHhCCCC----CCCHHHHHHHH------------------HHc---C------hHHHH--HhCcccccceecCC-C
Confidence 99999987521 00011111111 100 0 11112 24677889999975 4
Q ss_pred ccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEecCC
Q 001400 305 KGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEG 384 (1085)
Q Consensus 305 ~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~~G 384 (1085)
.+||||||||++||||++.+|++++||||||+||+.+...|.+.|+++.+ ++|+|+ ++|..+ ....||+|++|++|
T Consensus 600 ~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~--~~T~ii-ItHrl~-~~~~~D~iivl~~G 675 (694)
T TIGR03375 600 RSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLA--GKTLVL-VTHRTS-LLDLVDRIIVMDNG 675 (694)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhC--CCEEEE-EecCHH-HHHhCCEEEEEeCC
Confidence 67999999999999999999999999999999999999999999998753 455555 555554 56789999999999
Q ss_pred eEEEecChhhHHH
Q 001400 385 QIVYQGPRVSVLD 397 (1085)
Q Consensus 385 ~iv~~G~~~~~~~ 397 (1085)
++++.|+++++++
T Consensus 676 ~i~e~G~~~eLl~ 688 (694)
T TIGR03375 676 RIVADGPKDQVLE 688 (694)
T ss_pred EEEeeCCHHHHHH
Confidence 9999999998865
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-34 Score=314.40 Aligned_cols=210 Identities=22% Similarity=0.317 Sum_probs=166.1
Q ss_pred eecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhC--CCCceeeEEEECCccCCCC-----CCCceEEEEccCCCCC
Q 001400 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLG--HHLQVSGKITYNGHGFKEF-----VPPRTSAYVSQQDWQV 221 (1085)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~--~~~~~~G~i~~~G~~~~~~-----~~~~~~~yv~Q~d~~~ 221 (1085)
.+|+|+|++|++||+++|+|||||||||||++|+|..+ |....+|+|.++|+++... ..++.++|++|++.++
T Consensus 19 ~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~ 98 (252)
T PRK14239 19 KALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQPNPF 98 (252)
T ss_pred eeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHhhhhcEEEEecCCccC
Confidence 59999999999999999999999999999999999853 4222489999999887431 1246799999998877
Q ss_pred CCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccC
Q 001400 222 AEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGD 301 (1085)
Q Consensus 222 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 301 (1085)
+ +||+||+.+.....+... +. .....++++++.+|+.....+.. +
T Consensus 99 ~-~tv~enl~~~~~~~~~~~--~~-------------------------------~~~~~~~~~l~~~~l~~~~~~~~-~ 143 (252)
T PRK14239 99 P-MSIYENVVYGLRLKGIKD--KQ-------------------------------VLDEAVEKSLKGASIWDEVKDRL-H 143 (252)
T ss_pred c-CcHHHHHHHHHHHcCCCc--HH-------------------------------HHHHHHHHHHHHcCCchhHHHHH-h
Confidence 7 899999988643221100 00 00123566777888743211111 2
Q ss_pred cccccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEe
Q 001400 302 EMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILL 381 (1085)
Q Consensus 302 ~~~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L 381 (1085)
..+..|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++.+ + ++|+.++|+.+++.+++|+|++|
T Consensus 144 ~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~-~tii~~sH~~~~~~~~~d~i~~l 220 (252)
T PRK14239 144 DSALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKD--D-YTMLLVTRSMQQASRISDRTGFF 220 (252)
T ss_pred cCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhh--C-CeEEEEECCHHHHHHhCCEEEEE
Confidence 34567999999999999999999999999999999999999999999998854 3 45666888889999999999999
Q ss_pred cCCeEEEecChhhHH
Q 001400 382 SEGQIVYQGPRVSVL 396 (1085)
Q Consensus 382 ~~G~iv~~G~~~~~~ 396 (1085)
++|++++.|+.+++.
T Consensus 221 ~~G~i~~~g~~~~~~ 235 (252)
T PRK14239 221 LDGDLIEYNDTKQMF 235 (252)
T ss_pred ECCEEEEeCCHHHHH
Confidence 999999999988764
|
|
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-34 Score=359.61 Aligned_cols=206 Identities=24% Similarity=0.370 Sum_probs=161.4
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCC---CCceEEEEccCCCCCCCC
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV---PPRTSAYVSQQDWQVAEM 224 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~---~~~~~~yv~Q~d~~~~~l 224 (1085)
+++|+|+|++|+|||.++|+||||||||||+++|+|.++|. +|+|.+||.++++.. .++.++||+|++.+|. .
T Consensus 494 ~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~---~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~-g 569 (711)
T TIGR00958 494 VPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPT---GGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFS-G 569 (711)
T ss_pred CccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCC---CCEEEECCEEHHhcCHHHHHhhceEEecCccccc-c
Confidence 46999999999999999999999999999999999999886 999999999987664 3578999999998765 6
Q ss_pred CHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCccc
Q 001400 225 TVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEML 304 (1085)
Q Consensus 225 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 304 (1085)
|+||||.++... ...+.+.+++ +... .++.++ .|++..||.+|+. .
T Consensus 570 TIreNI~~g~~~----~~~e~i~~al------------------~~a~---------l~~~i~--~lp~GldT~ige~-G 615 (711)
T TIGR00958 570 SVRENIAYGLTD----TPDEEIMAAA------------------KAAN---------AHDFIM--EFPNGYDTEVGEK-G 615 (711)
T ss_pred CHHHHHhcCCCC----CCHHHHHHHH------------------HHcC---------CHHHHH--hCCCccCCcccCC-C
Confidence 999999885311 0001111110 0000 111111 3567789999975 4
Q ss_pred ccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEecCC
Q 001400 305 KGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEG 384 (1085)
Q Consensus 305 ~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~~G 384 (1085)
.+||||||||++||||++++|+|++||||||+||+.+...|.+ ... ..++ +++.++|..+ ....+|+|++|++|
T Consensus 616 ~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~-~~~---~~~~-TvIiItHrl~-~i~~aD~IivL~~G 689 (711)
T TIGR00958 616 SQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE-SRS---RASR-TVLLIAHRLS-TVERADQILVLKKG 689 (711)
T ss_pred CcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH-hhc---cCCC-eEEEEeccHH-HHHhCCEEEEEECC
Confidence 6799999999999999999999999999999999999999888 221 2234 4555666654 45779999999999
Q ss_pred eEEEecChhhHHH
Q 001400 385 QIVYQGPRVSVLD 397 (1085)
Q Consensus 385 ~iv~~G~~~~~~~ 397 (1085)
+++.+|+++++.+
T Consensus 690 ~ive~Gt~~eL~~ 702 (711)
T TIGR00958 690 SVVEMGTHKQLME 702 (711)
T ss_pred EEEEeeCHHHHHh
Confidence 9999999998864
|
|
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-32 Score=342.87 Aligned_cols=210 Identities=22% Similarity=0.404 Sum_probs=171.8
Q ss_pred eeeeccceeeeeccccccccccccCCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccC
Q 001400 816 SMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPK 895 (1085)
Q Consensus 816 ~~~~~~~~y~v~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 895 (1085)
.+.++|++|.++ ++..+|+|+|++|++|+++||+|+||||||||+++|+|... +.+|+|.+||.++
T Consensus 473 ~I~~~~vsf~y~------------~~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~--p~~G~I~idg~~i 538 (708)
T TIGR01193 473 DIVINDVSYSYG------------YGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQ--ARSGEILLNGFSL 538 (708)
T ss_pred cEEEEEEEEEcC------------CCCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCC--CCCcEEEECCEEH
Confidence 567778777653 12469999999999999999999999999999999999876 5689999999886
Q ss_pred C---hhcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCccc-------ccccCCCC
Q 001400 896 R---QETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLS-------GALIGLPG 965 (1085)
Q Consensus 896 ~---~~~~~~~~gy~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~ 965 (1085)
+ ...+++.+|||+|++.++++ |++||+.++.. + +.+ ++.++++++..++.+.. +..++..
T Consensus 539 ~~~~~~~lr~~i~~v~Q~~~lf~g-TI~eNi~l~~~---~-~~~----~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~- 608 (708)
T TIGR01193 539 KDIDRHTLRQFINYLPQEPYIFSG-SILENLLLGAK---E-NVS----QDEIWAACEIAEIKDDIENMPLGYQTELSEE- 608 (708)
T ss_pred HHcCHHHHHHheEEEecCceehhH-HHHHHHhccCC---C-CCC----HHHHHHHHHHhCCHHHHHhcccccCcEecCC-
Confidence 4 35678899999999998865 99999987521 1 111 23356677766664422 3334433
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEecC
Q 001400 966 INGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 1045 (1085)
Q Consensus 966 ~~~LS~Gqrqrl~iA~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~g 1045 (1085)
+.+||||||||++|||||+++|+||+||||||+||+.+++.+++.|+++ +|+|+|++||+++ ..+.+|++++|++
T Consensus 609 G~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~--~~~T~IiitHr~~--~~~~~D~i~~l~~- 683 (708)
T TIGR01193 609 GSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL--QDKTIIFVAHRLS--VAKQSDKIIVLDH- 683 (708)
T ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh--cCCEEEEEecchH--HHHcCCEEEEEEC-
Confidence 3579999999999999999999999999999999999999999999985 5899999999986 5678999999985
Q ss_pred cEEEEecCC
Q 001400 1046 GELIYAGPL 1054 (1085)
Q Consensus 1046 G~~~~~g~~ 1054 (1085)
|+++..|+-
T Consensus 684 G~i~~~G~~ 692 (708)
T TIGR01193 684 GKIIEQGSH 692 (708)
T ss_pred CEEEEECCH
Confidence 789988873
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-34 Score=312.30 Aligned_cols=210 Identities=24% Similarity=0.357 Sum_probs=165.2
Q ss_pred eecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCC--CCceeeEEEECCccCCCC-----CCCceEEEEccCCCCC
Q 001400 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGH--HLQVSGKITYNGHGFKEF-----VPPRTSAYVSQQDWQV 221 (1085)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~--~~~~~G~i~~~G~~~~~~-----~~~~~~~yv~Q~d~~~ 221 (1085)
++|+|+|++|++||+++|+|||||||||||++|+|.+++ ..+.+|+|.++|+++... ..++.++|++|++.++
T Consensus 17 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 96 (250)
T PRK14240 17 QALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPNPF 96 (250)
T ss_pred eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHHHhccEEEEecCCccC
Confidence 599999999999999999999999999999999998753 212589999999987531 1245799999998877
Q ss_pred CCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccC
Q 001400 222 AEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGD 301 (1085)
Q Consensus 222 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 301 (1085)
+ +||+||+.++....+.... . .....++++++.+++.+...... +
T Consensus 97 ~-~t~~~ni~~~~~~~~~~~~-------------------~--------------~~~~~~~~~l~~~~l~~~l~~~~-~ 141 (250)
T PRK14240 97 P-MSIYDNVAYGPRTHGIKDK-------------------K--------------KLDEIVEKSLKGAALWDEVKDRL-K 141 (250)
T ss_pred c-ccHHHHHHHHHHhcCCCCH-------------------H--------------HHHHHHHHHHHHcCCchhhHHHH-h
Confidence 7 8999999886433221000 0 00123566677777643211111 2
Q ss_pred cccccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEe
Q 001400 302 EMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILL 381 (1085)
Q Consensus 302 ~~~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L 381 (1085)
..+..|||||||||+|||||+.+|++++|||||+|||+.++..+.+.|+++.+ + ++|+.++|+.+++.+++|++++|
T Consensus 142 ~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~-~tiii~sH~~~~~~~~~d~v~~l 218 (250)
T PRK14240 142 KSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKK--D-YTIVIVTHNMQQASRISDKTAFF 218 (250)
T ss_pred cCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--C-CeEEEEEeCHHHHHhhCCEEEEE
Confidence 33457999999999999999999999999999999999999999999998853 3 45666788888999999999999
Q ss_pred cCCeEEEecChhhHH
Q 001400 382 SEGQIVYQGPRVSVL 396 (1085)
Q Consensus 382 ~~G~iv~~G~~~~~~ 396 (1085)
++|++++.|+.+++.
T Consensus 219 ~~G~i~~~~~~~~~~ 233 (250)
T PRK14240 219 LNGEIVEFGDTVDLF 233 (250)
T ss_pred ECCEEEEeCCHHHHH
Confidence 999999999987763
|
|
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-34 Score=317.46 Aligned_cols=209 Identities=25% Similarity=0.370 Sum_probs=170.9
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCC---CCceEEEEccCCCCCCCC
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV---PPRTSAYVSQQDWQVAEM 224 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~---~~~~~~yv~Q~d~~~~~l 224 (1085)
+++|+|+|+++++|++++|+|||||||||||++|+|.+++. +|+|.++|+++.... .++.++|++|++.+++.+
T Consensus 15 ~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 91 (255)
T PRK11231 15 KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQ---SGTVFLGDKPISMLSSRQLARRLALLPQHHLTPEGI 91 (255)
T ss_pred EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC---CcEEEECCEEhHHCCHHHHhhheEEecccCCCCCCc
Confidence 46999999999999999999999999999999999998775 999999998765432 235699999998888889
Q ss_pred CHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCccc
Q 001400 225 TVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEML 304 (1085)
Q Consensus 225 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 304 (1085)
||.||+.++..... ..+. ..+ ......++++++.+||++..++.+
T Consensus 92 tv~~~i~~~~~~~~--~~~~-------------~~~---------------~~~~~~~~~~l~~~~l~~~~~~~~----- 136 (255)
T PRK11231 92 TVRELVAYGRSPWL--SLWG-------------RLS---------------AEDNARVNQAMEQTRINHLADRRL----- 136 (255)
T ss_pred cHHHHHHhccchhh--hhcc-------------CCC---------------HHHHHHHHHHHHHcCCHHHHcCCc-----
Confidence 99999987531000 0000 000 001224678899999987777654
Q ss_pred ccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEecCC
Q 001400 305 KGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEG 384 (1085)
Q Consensus 305 ~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~~G 384 (1085)
..|||||||||+||+|++.+|++|+|||||+|||+.++..+.+.|+++... +++++.++|+.+++.+++|++++|++|
T Consensus 137 ~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~--~~tiii~tH~~~~~~~~~d~i~~l~~G 214 (255)
T PRK11231 137 TDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQ--GKTVVTVLHDLNQASRYCDHLVVLANG 214 (255)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHC--CCEEEEEECCHHHHHHhcCEEEEEECC
Confidence 469999999999999999999999999999999999999999999988653 455666888899999999999999999
Q ss_pred eEEEecChhhHH
Q 001400 385 QIVYQGPRVSVL 396 (1085)
Q Consensus 385 ~iv~~G~~~~~~ 396 (1085)
++++.|+.+++.
T Consensus 215 ~i~~~~~~~~~~ 226 (255)
T PRK11231 215 HVMAQGTPEEVM 226 (255)
T ss_pred eEEEEcCHHHhc
Confidence 999999887653
|
|
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-34 Score=314.12 Aligned_cols=212 Identities=20% Similarity=0.261 Sum_probs=169.0
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhC--CCCceeeEEEECCccCCCC-----CCCceEEEEccCCCC
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLG--HHLQVSGKITYNGHGFKEF-----VPPRTSAYVSQQDWQ 220 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~--~~~~~~G~i~~~G~~~~~~-----~~~~~~~yv~Q~d~~ 220 (1085)
+.+|+|+|+.|++|++++|+|||||||||||++|+|.++ |..+.+|+|.++|.++... ..++.++|++|++.+
T Consensus 17 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~ 96 (252)
T PRK14256 17 NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIRRRVGMVFQKPNP 96 (252)
T ss_pred eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHHhhccEEEEecCCCC
Confidence 359999999999999999999999999999999999875 3212489999999887432 224679999999988
Q ss_pred CCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCccccccccc
Q 001400 221 VAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVG 300 (1085)
Q Consensus 221 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 300 (1085)
++.+||+||+.++.+..+.... . .....++++++.+||........
T Consensus 97 ~~~~tv~enl~~~~~~~~~~~~-------------------~--------------~~~~~~~~~l~~~~l~~~~~~~~- 142 (252)
T PRK14256 97 FPAMSIYDNVIAGYKLNGRVNR-------------------S--------------EADEIVESSLKRVALWDEVKDRL- 142 (252)
T ss_pred CCcCcHHHHHHhHHHhcCCCCH-------------------H--------------HHHHHHHHHHHHcCCchhhhHHh-
Confidence 9999999999875432110000 0 00123677788888854211111
Q ss_pred CcccccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEE
Q 001400 301 DEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVIL 380 (1085)
Q Consensus 301 ~~~~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~ 380 (1085)
+..+..|||||||||+||+||+.+|++++|||||+|||..++.++.+.|+++++ + ++|+.++|+.+++.++||++++
T Consensus 143 ~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~--~-~tiiivsH~~~~~~~~~d~i~~ 219 (252)
T PRK14256 143 KSNAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKE--K-YTIIIVTHNMQQAARVSDYTAF 219 (252)
T ss_pred hCCcCcCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh--C-CcEEEEECCHHHHHhhCCEEEE
Confidence 123557999999999999999999999999999999999999999999999864 3 4566688889999999999999
Q ss_pred ecCCeEEEecChhhHH
Q 001400 381 LSEGQIVYQGPRVSVL 396 (1085)
Q Consensus 381 L~~G~iv~~G~~~~~~ 396 (1085)
|++|+++..|+.+++.
T Consensus 220 l~~G~i~~~~~~~~~~ 235 (252)
T PRK14256 220 FYMGDLVECGETKKIF 235 (252)
T ss_pred EECCEEEEeCCHHHHH
Confidence 9999999999987763
|
|
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-34 Score=317.61 Aligned_cols=207 Identities=23% Similarity=0.259 Sum_probs=162.6
Q ss_pred CeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCC---CCeeeeEEEEcCccCCh-----hcccceEEEEccCCC
Q 001400 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKT---GGIIEGDIYISGYPKRQ-----ETFARISGYCEQNDI 912 (1085)
Q Consensus 841 ~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~---~~~~~G~i~i~g~~~~~-----~~~~~~~gy~~Q~~~ 912 (1085)
+..+|+|+||+|++||++||+|+||||||||+++|+|... ..+.+|+|.++|.++.. ..+++.++|++|++.
T Consensus 36 ~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~ 115 (271)
T PRK14238 36 EDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVEELRTNVGMVFQKPN 115 (271)
T ss_pred CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccHHHHhhhEEEEecCCc
Confidence 3468999999999999999999999999999999999753 11368999999987631 234667999999988
Q ss_pred CCCCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCc-ccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEE
Q 001400 913 HSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTS-LSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVF 991 (1085)
Q Consensus 913 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~ill 991 (1085)
+++ .|++||+.+....+.. .........+.++++.+++.. +.+.... .+..||+|||||++|||+|+.+|+|||
T Consensus 116 ~~~-~tv~eni~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~l~~~~~~--~~~~LSgGe~qrv~laraL~~~p~lll 190 (271)
T PRK14238 116 PFP-KSIYDNVTYGPKIHGI--KDKKTLDEIVEKSLRGAAIWDELKDRLHD--NAYGLSGGQQQRLCIARCLAIEPDVIL 190 (271)
T ss_pred ccc-ccHHHHHHHHHHhcCC--CcHHHHHHHHHHHHHHcCCcchHHHHHhc--CcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 877 4999999876432211 111222344566676665421 2111111 235799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCC
Q 001400 992 MDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1085)
Q Consensus 992 lDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~ 1055 (1085)
|||||+|||+.++..+.+.|+++.+ ++|||++||+++ .+.+.+|++++|++ |++++.|+..
T Consensus 191 LDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~i~~~~d~i~~l~~-G~i~~~g~~~ 251 (271)
T PRK14238 191 MDEPTSALDPISTLKVEELVQELKK-DYSIIIVTHNMQ-QAARISDKTAFFLN-GYVNEYDDTD 251 (271)
T ss_pred EeCCCCcCCHHHHHHHHHHHHHHHc-CCEEEEEEcCHH-HHHHhCCEEEEEEC-CEEEEeCCHH
Confidence 9999999999999999999999865 799999999986 46778999999985 6888888754
|
|
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=356.57 Aligned_cols=209 Identities=26% Similarity=0.419 Sum_probs=171.4
Q ss_pred eeeeccceeeeeccccccccccccCCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccC
Q 001400 816 SMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPK 895 (1085)
Q Consensus 816 ~~~~~~~~y~v~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 895 (1085)
.+.++|+++... ++.++|+|+||+|+||+++||+|+||||||||+++|+|.. + .+|+|.+||.++
T Consensus 349 ~i~~~~vsf~~~------------~~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p--~~G~I~i~g~~i 413 (588)
T PRK11174 349 TIEAEDLEILSP------------DGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-P--YQGSLKINGIEL 413 (588)
T ss_pred eEEEEeeEEecc------------CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-C--CCcEEEECCEec
Confidence 577888865431 2356999999999999999999999999999999999976 3 489999999886
Q ss_pred Ch---hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcc-------cccccCCCC
Q 001400 896 RQ---ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSL-------SGALIGLPG 965 (1085)
Q Consensus 896 ~~---~~~~~~~gy~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~~~~~ 965 (1085)
.+ ..+++.++||+|++.++.+ |++||+.++. + +.. ++.++++++..++.+. .+..++..|
T Consensus 414 ~~~~~~~lr~~i~~v~Q~~~LF~~-TI~eNI~~g~----~-~~~----~eei~~al~~a~l~~~i~~lp~G~dT~vge~G 483 (588)
T PRK11174 414 RELDPESWRKHLSWVGQNPQLPHG-TLRDNVLLGN----P-DAS----DEQLQQALENAWVSEFLPLLPQGLDTPIGDQA 483 (588)
T ss_pred ccCCHHHHHhheEEecCCCcCCCc-CHHHHhhcCC----C-CCC----HHHHHHHHHHhCHHHHHHhcccccccccccCC
Confidence 53 5678899999999998865 9999998752 1 112 2345667777666542 234444433
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEecC
Q 001400 966 INGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 1045 (1085)
Q Consensus 966 ~~~LS~Gqrqrl~iA~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~g 1045 (1085)
.+||||||||++|||||+++|+||+||||||+||+++++.|++.|+++. +++|+|++||+++ ..+.+|++++|++
T Consensus 484 -~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvIiItHrl~--~i~~aD~Iivl~~- 558 (588)
T PRK11174 484 -AGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAAS-RRQTTLMVTHQLE--DLAQWDQIWVMQD- 558 (588)
T ss_pred -CCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEecChH--HHHhCCEEEEEeC-
Confidence 4699999999999999999999999999999999999999999999874 6899999999985 5678999999985
Q ss_pred cEEEEecCC
Q 001400 1046 GELIYAGPL 1054 (1085)
Q Consensus 1046 G~~~~~g~~ 1054 (1085)
|+++..|+-
T Consensus 559 G~i~e~G~~ 567 (588)
T PRK11174 559 GQIVQQGDY 567 (588)
T ss_pred CeEeecCCH
Confidence 789988874
|
|
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-34 Score=323.10 Aligned_cols=205 Identities=19% Similarity=0.309 Sum_probs=166.6
Q ss_pred eecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCC----C----CCCceEEEEccCCC-
Q 001400 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKE----F----VPPRTSAYVSQQDW- 219 (1085)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~----~----~~~~~~~yv~Q~d~- 219 (1085)
.+|+|+|++|++|++++|+|||||||||||++|+|.++|. +|+|.++|.++.. . ..++.++|++|++.
T Consensus 25 ~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~~i~~v~q~~~~ 101 (289)
T PRK13645 25 KALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISE---TGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEY 101 (289)
T ss_pred ceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEccccccccccHHHHhccEEEEEeCcch
Confidence 5999999999999999999999999999999999998876 9999999987642 1 12457999999974
Q ss_pred CCCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCc-cccccc
Q 001400 220 QVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLD-TCADTL 298 (1085)
Q Consensus 220 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~ 298 (1085)
.+...||+||+.|+....+.. . . .....++.+++.++|+ +..++.
T Consensus 102 ~~~~~tv~enl~~~~~~~~~~--~--------~------------------------~~~~~~~~ll~~~~L~~~~~~~~ 147 (289)
T PRK13645 102 QLFQETIEKDIAFGPVNLGEN--K--------Q------------------------EAYKKVPELLKLVQLPEDYVKRS 147 (289)
T ss_pred hhhhhHHHHHHHHHHHHcCCC--H--------H------------------------HHHHHHHHHHHHcCCChhHhcCC
Confidence 233469999998864321100 0 0 0012366788899995 455554
Q ss_pred ccCcccccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeE
Q 001400 299 VGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDV 378 (1085)
Q Consensus 299 vg~~~~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i 378 (1085)
+ ..|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.+.. +++|+.++|..+++.+++|++
T Consensus 148 ~-----~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~-~~tiiiisH~~~~~~~~~d~i 221 (289)
T PRK13645 148 P-----FELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEY-KKRIIMVTHNMDQVLRIADEV 221 (289)
T ss_pred h-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEecCHHHHHHhCCEE
Confidence 4 5699999999999999999999999999999999999999999999987543 455666888899999999999
Q ss_pred EEecCCeEEEecChhhHH
Q 001400 379 ILLSEGQIVYQGPRVSVL 396 (1085)
Q Consensus 379 i~L~~G~iv~~G~~~~~~ 396 (1085)
++|++|++++.|+.+++.
T Consensus 222 ~~l~~G~i~~~g~~~~~~ 239 (289)
T PRK13645 222 IVMHEGKVISIGSPFEIF 239 (289)
T ss_pred EEEECCEEEEeCCHHHHh
Confidence 999999999999987763
|
|
| >PRK13539 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=307.73 Aligned_cols=190 Identities=28% Similarity=0.357 Sum_probs=157.3
Q ss_pred cccCCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCChhcccceEEEEccCCCCCCC
Q 001400 837 VLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPG 916 (1085)
Q Consensus 837 ~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gy~~Q~~~~~~~ 916 (1085)
+.+++..+|+|+||+|++||++||+|+||||||||+++|+|... +.+|+|.++|.+.....+++.++|++|++.+++.
T Consensus 10 ~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 87 (207)
T PRK13539 10 CVRGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLP--PAAGTIKLDGGDIDDPDVAEACHYLGHRNAMKPA 87 (207)
T ss_pred EEECCeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEeCcchhhHhhcEEecCCCcCCCC
Confidence 33445679999999999999999999999999999999999866 4689999999875422256678999998888888
Q ss_pred CCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Q 001400 917 LTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPT 996 (1085)
Q Consensus 917 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEPt 996 (1085)
.|+.||+.+....+. .. .+.++++++.+++.+..+... ..||+|||||++|||||+.+|++|||||||
T Consensus 88 ~tv~~~l~~~~~~~~---~~----~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~la~al~~~p~llllDEPt 155 (207)
T PRK13539 88 LTVAENLEFWAAFLG---GE----ELDIAAALEAVGLAPLAHLPF-----GYLSAGQKRRVALARLLVSNRPIWILDEPT 155 (207)
T ss_pred CcHHHHHHHHHHhcC---Cc----HHHHHHHHHHcCCHHHHcCCh-----hhcCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 999999987543221 11 134678999999976554432 479999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEe
Q 001400 997 SGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMK 1043 (1085)
Q Consensus 997 sgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~ 1043 (1085)
+|||+.++..+++.|++++++|+|||++||+++ ++ .. |+++.+.
T Consensus 156 ~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~-~~-~~~~~~~ 199 (207)
T PRK13539 156 AALDAAAVALFAELIRAHLAQGGIVIAATHIPL-GL-PG-ARELDLG 199 (207)
T ss_pred ccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCch-hh-cc-CcEEeec
Confidence 999999999999999998778999999999975 23 33 8887774
|
|
| >PRK03695 vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-34 Score=312.93 Aligned_cols=198 Identities=25% Similarity=0.385 Sum_probs=166.4
Q ss_pred EeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCCh---hcccceEEEEccCCCCCCCCCHH
Q 001400 844 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFARISGYCEQNDIHSPGLTVL 920 (1085)
Q Consensus 844 ~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gy~~Q~~~~~~~~tv~ 920 (1085)
+|+||||++++|++++|+|+||||||||+++|+|..+ .+|+|.++|.++.. ..+++.+||++|++.+++.+|++
T Consensus 11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~---~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 87 (248)
T PRK03695 11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP---GSGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVF 87 (248)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC---CCeEEEECCEecCcCCHHHHhhheEEecccCccCCCccHH
Confidence 7899999999999999999999999999999999764 37999999987642 23445689999998888889999
Q ss_pred HHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhc-------CCCEEEEe
Q 001400 921 ESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVA-------NPSIVFMD 993 (1085)
Q Consensus 921 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~-------~p~illlD 993 (1085)
||+.+..... .......+.++++++.+++.+..+... ..||+|||||++||+||+. +|++||||
T Consensus 88 ~nl~~~~~~~----~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~~~~~~p~p~llllD 158 (248)
T PRK03695 88 QYLTLHQPDK----TRTEAVASALNEVAEALGLDDKLGRSV-----NQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLD 158 (248)
T ss_pred HHHHhcCccC----CCcHHHHHHHHHHHHHcCCHhHhcCCc-----ccCCHHHHHHHHHHHHHhccccccCCCCCEEEEc
Confidence 9998753211 112223456788999999876655543 5799999999999999997 67999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCC
Q 001400 994 EPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1085)
Q Consensus 994 EPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~ 1055 (1085)
|||+|||+.++..+.+.|+++.++|.|||++||+++ ++.+.+|++++|++ |++++.|+..
T Consensus 159 EPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~-G~i~~~g~~~ 218 (248)
T PRK03695 159 EPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLN-HTLRHADRVWLLKQ-GKLLASGRRD 218 (248)
T ss_pred CCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEECCHH
Confidence 999999999999999999999777999999999986 47788999999985 7899888754
|
|
| >PRK14246 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-34 Score=314.18 Aligned_cols=209 Identities=25% Similarity=0.320 Sum_probs=165.5
Q ss_pred ccCCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeee------eEEEEcCccCC---hhcccceEEEEc
Q 001400 838 LEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIE------GDIYISGYPKR---QETFARISGYCE 908 (1085)
Q Consensus 838 ~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~------G~i~i~g~~~~---~~~~~~~~gy~~ 908 (1085)
.+++..+|+|+||++.+||+++|+|+||||||||+++|+|... +.+ |++.++|.+.. ...+++.++|++
T Consensus 19 ~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~--~~~G~v~~~G~~~~~g~~~~~~~~~~~~~~i~~~~ 96 (257)
T PRK14246 19 YINDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIE--IYDSKIKVDGKVLYFGKDIFQIDAIKLRKEVGMVF 96 (257)
T ss_pred ecCCceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCcCceeEcCEEEECCcccccCCHHHHhcceEEEc
Confidence 3456779999999999999999999999999999999999755 234 55555555542 223567799999
Q ss_pred cCCCCCCCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCccc-ccccCCCCCCCCCHHHHHHHHHHHHHhcCC
Q 001400 909 QNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLS-GALIGLPGINGLSTEQRKRLTIAVELVANP 987 (1085)
Q Consensus 909 Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p 987 (1085)
|++.+++.+|++||+.+....... ....+..+.++++++.+++.+.. +.... .+..||+|||||++|||||+.+|
T Consensus 97 q~~~~~~~~tv~~nl~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~LS~G~~qrl~laral~~~P 172 (257)
T PRK14246 97 QQPNPFPHLSIYDNIAYPLKSHGI--KEKREIKKIVEECLRKVGLWKEVYDRLNS--PASQLSGGQQQRLTIARALALKP 172 (257)
T ss_pred cCCccCCCCcHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHcCCCccchhhhcC--CcccCCHHHHHHHHHHHHHHcCC
Confidence 999998999999999876432111 11233345678889998885321 11111 13579999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCC
Q 001400 988 SIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1085)
Q Consensus 988 ~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~ 1055 (1085)
++|+|||||+|||+.++..+.+.|+++.+ ++|||++||+++ .+.+.||++++|++ |+++..|+..
T Consensus 173 ~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiilvsh~~~-~~~~~~d~v~~l~~-g~i~~~g~~~ 237 (257)
T PRK14246 173 KVLLMDEPTSMIDIVNSQAIEKLITELKN-EIAIVIVSHNPQ-QVARVADYVAFLYN-GELVEWGSSN 237 (257)
T ss_pred CEEEEcCCCccCCHHHHHHHHHHHHHHhc-CcEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEECCHH
Confidence 99999999999999999999999999864 799999999986 46688999999985 7898888754
|
|
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-34 Score=315.77 Aligned_cols=200 Identities=27% Similarity=0.382 Sum_probs=155.0
Q ss_pred EEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCCh---hcccceEEEEccCCCCCCCCCH
Q 001400 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFARISGYCEQNDIHSPGLTV 919 (1085)
Q Consensus 843 ~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gy~~Q~~~~~~~~tv 919 (1085)
.+|+|+||++++|++++|+|+||||||||+++|+|..+ +.+|+|.++|.+... ...++.++|++|++.+++ .|+
T Consensus 16 ~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv 92 (234)
T cd03251 16 PVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYD--VDSGRILIDGHDVRDYTLASLRRQIGLVSQDVFLFN-DTV 92 (234)
T ss_pred cceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcccc--CCCCEEEECCEEhhhCCHHHHHhhEEEeCCCCeecc-ccH
Confidence 68999999999999999999999999999999999876 468999999986532 334667999999988776 699
Q ss_pred HHHHHHhhhhcCCCcccHHHHHHHHHHHHHHc--CCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCC
Q 001400 920 LESLLFSAWLRLPSEIELETQRAFVEEVMELV--ELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTS 997 (1085)
Q Consensus 920 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEPts 997 (1085)
+||+.+..................+++.++.+ ++....+.. +..||+|||||++|||||+.+|++|+|||||+
T Consensus 93 ~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-----~~~LS~G~~qrv~la~al~~~p~lllLDEP~~ 167 (234)
T cd03251 93 AENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGER-----GVKLSGGQRQRIAIARALLKDPPILILDEATS 167 (234)
T ss_pred HHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccC-----CCcCCHHHHHHHHHHHHHhcCCCEEEEeCccc
Confidence 99998753211000000000011223444443 333333322 35799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCC
Q 001400 998 GLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1085)
Q Consensus 998 gLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~ 1054 (1085)
|||+.++..+.+.|+++. ++.|||++||+++ ++ +.||++++|++ |+++..|+.
T Consensus 168 ~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~-~~-~~~d~v~~l~~-G~i~~~~~~ 220 (234)
T cd03251 168 ALDTESERLVQAALERLM-KNRTTFVIAHRLS-TI-ENADRIVVLED-GKIVERGTH 220 (234)
T ss_pred cCCHHHHHHHHHHHHHhc-CCCEEEEEecCHH-HH-hhCCEEEEecC-CeEeeeCCH
Confidence 999999999999999986 5899999999986 35 45999999986 688887764
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-34 Score=311.03 Aligned_cols=206 Identities=27% Similarity=0.397 Sum_probs=171.6
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCC-CceEEEEccCCCCCCCCCH
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP-PRTSAYVSQQDWQVAEMTV 226 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 226 (1085)
+++|+|+|+++++|++++|+||||||||||+++|+|.+++. +|+|.++|.++..... ++.++|++|++.+++.+|+
T Consensus 13 ~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~---~G~i~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~ 89 (237)
T TIGR00968 13 FQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPD---SGRIRLNGQDATRVHARDRKIGFVFQHYALFKHLTV 89 (237)
T ss_pred eeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcCcCChhhcCEEEEecChhhccCCcH
Confidence 36999999999999999999999999999999999998776 9999999988754332 4679999999988888999
Q ss_pred HHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCccccc
Q 001400 227 RETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKG 306 (1085)
Q Consensus 227 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 306 (1085)
+||+.+.....+... . .....++++++.++|....++.+ +.
T Consensus 90 ~enl~~~~~~~~~~~--~--------------------------------~~~~~~~~~l~~~~l~~~~~~~~-----~~ 130 (237)
T TIGR00968 90 RDNIAFGLEIRKHPK--A--------------------------------KIKARVEELLELVQLEGLGDRYP-----NQ 130 (237)
T ss_pred HHHHHhHHHhcCCCH--H--------------------------------HHHHHHHHHHHHcCCHhHhhCCh-----hh
Confidence 999987643221100 0 00123677888999976666554 46
Q ss_pred CchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEecCCeE
Q 001400 307 ISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQI 386 (1085)
Q Consensus 307 LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~~G~i 386 (1085)
||||||||++||++|+.+|++++|||||+|||..+...+.+.|++++... +.+++.++|...++.+++|++++|++|++
T Consensus 131 lS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~-~~tvli~sH~~~~~~~~~d~i~~l~~g~i 209 (237)
T TIGR00968 131 LSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEV-HVTTVFVTHDQEEAMEVADRIVVMSNGKI 209 (237)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHhhcCEEEEEECCEE
Confidence 99999999999999999999999999999999999999999999886532 34555577888889999999999999999
Q ss_pred EEecChhhHH
Q 001400 387 VYQGPRVSVL 396 (1085)
Q Consensus 387 v~~G~~~~~~ 396 (1085)
++.|+.+++.
T Consensus 210 ~~~~~~~~~~ 219 (237)
T TIGR00968 210 EQIGSPDEVY 219 (237)
T ss_pred EEecCHHHHH
Confidence 9999987764
|
|
| >TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-34 Score=314.41 Aligned_cols=205 Identities=26% Similarity=0.295 Sum_probs=163.6
Q ss_pred cCCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCcc-----CCh---h----cccceEEE
Q 001400 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYP-----KRQ---E----TFARISGY 906 (1085)
Q Consensus 839 ~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~-----~~~---~----~~~~~~gy 906 (1085)
+++..+|+|+||+|++|++++|+|+||||||||+++|+|..+ +.+|+|.++|.+ +.. . ..++.++|
T Consensus 13 ~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~ 90 (253)
T TIGR02323 13 YGGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLA--PDHGTATYIMRSGAELELYQLSEAERRRLMRTEWGF 90 (253)
T ss_pred eCCceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEEecccccccccccCCHHHHHHhhhcceEE
Confidence 344568999999999999999999999999999999999876 468999999976 321 1 12356899
Q ss_pred EccCCC--CCCCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCc-ccccccCCCCCCCCCHHHHHHHHHHHHH
Q 001400 907 CEQNDI--HSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTS-LSGALIGLPGINGLSTEQRKRLTIAVEL 983 (1085)
Q Consensus 907 ~~Q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~~~~~LS~Gqrqrl~iA~aL 983 (1085)
++|++. ..+..|+.+|+.+....... .........++++++.+++.+ ..+.. +..||+|||||++|||||
T Consensus 91 ~~q~~~~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~l~~l~l~~~~~~~~-----~~~LSgG~~qrv~laral 163 (253)
T TIGR02323 91 VHQNPRDGLRMRVSAGANIGERLMAIGA--RHYGNIRAAAHDWLEEVEIDPTRIDDL-----PRAFSGGMQQRLQIARNL 163 (253)
T ss_pred EEeCcccccCccccHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHcCCChhhhhcC-----chhcCHHHHHHHHHHHHH
Confidence 999875 34567899998654211110 011123356788899999863 44443 357999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCC
Q 001400 984 VANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1085)
Q Consensus 984 ~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~ 1054 (1085)
+.+|++|||||||+|||+.++..+++.|+++.++ |.|||++||+++ .+.+.+|++++|++ |++++.|+.
T Consensus 164 ~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~-~~~~~~d~~~~l~~-G~i~~~~~~ 233 (253)
T TIGR02323 164 VTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLG-VARLLAQRLLVMQQ-GRVVESGLT 233 (253)
T ss_pred hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEEC-CEEEEECCH
Confidence 9999999999999999999999999999998654 899999999986 46678999999985 788888874
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. |
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-34 Score=316.15 Aligned_cols=209 Identities=20% Similarity=0.285 Sum_probs=164.2
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCC--ceeeEEEECCccCCCC-----CCCceEEEEccCCCC
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHL--QVSGKITYNGHGFKEF-----VPPRTSAYVSQQDWQ 220 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~--~~~G~i~~~G~~~~~~-----~~~~~~~yv~Q~d~~ 220 (1085)
..+|+|+|++|++|++++|+|||||||||||++|+|.+++.. +.+|+|.++|.++... ..++.++|++|++.+
T Consensus 26 ~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l 105 (269)
T PRK14259 26 FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPNP 105 (269)
T ss_pred EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCHHHHhhceEEEccCCcc
Confidence 359999999999999999999999999999999999876311 2499999999876421 123569999999987
Q ss_pred CCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCccccccccc
Q 001400 221 VAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVG 300 (1085)
Q Consensus 221 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 300 (1085)
++ .||+||+.+.+...+.. + + ....++.+++.+++....+...
T Consensus 106 ~~-~tv~enl~~~~~~~~~~---~---~-----------------------------~~~~~~~~l~~~~l~~~l~~~~- 148 (269)
T PRK14259 106 FP-KSIYENIAFGARINGYT---G---D-----------------------------MDELVERSLRKAAVWDECKDKL- 148 (269)
T ss_pred ch-hhHHHHHhhhhhhcCCc---H---H-----------------------------HHHHHHHHHHHhCCcchhhhhh-
Confidence 87 59999998865432110 0 0 0112455667776642111111
Q ss_pred CcccccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEE
Q 001400 301 DEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVIL 380 (1085)
Q Consensus 301 ~~~~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~ 380 (1085)
+..+..|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++++ + ++|+.++|+..++.++||++++
T Consensus 149 ~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~--~-~tiiivtH~~~~~~~~~d~i~~ 225 (269)
T PRK14259 149 NESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKK--N-FTIVIVTHNMQQAVRVSDMTAF 225 (269)
T ss_pred CCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc--C-CEEEEEeCCHHHHHHhcCEEEE
Confidence 234467999999999999999999999999999999999999999999998853 3 5566688999999999999999
Q ss_pred ecC-----------CeEEEecChhhHH
Q 001400 381 LSE-----------GQIVYQGPRVSVL 396 (1085)
Q Consensus 381 L~~-----------G~iv~~G~~~~~~ 396 (1085)
|++ |++++.|+++++.
T Consensus 226 l~~~~~~~~~~g~~g~~~~~~~~~~~~ 252 (269)
T PRK14259 226 FNAEEVEGGSGGKVGYLVEFNETKKIF 252 (269)
T ss_pred EeccccccccccccceEEEeCCHHHHH
Confidence 996 6789999988874
|
|
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-34 Score=315.86 Aligned_cols=212 Identities=21% Similarity=0.296 Sum_probs=167.9
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCC--CceeeEEEECCccCCCC-----CCCceEEEEccCCCC
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHH--LQVSGKITYNGHGFKEF-----VPPRTSAYVSQQDWQ 220 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~--~~~~G~i~~~G~~~~~~-----~~~~~~~yv~Q~d~~ 220 (1085)
..+|+|+|+.|+||++++|+|||||||||||++|+|.+++. .+.+|+|+++|.++... ..++.++|++|++..
T Consensus 32 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~ 111 (267)
T PRK14235 32 KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVVELRARVGMVFQKPNP 111 (267)
T ss_pred EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccchHHHhhceEEEecCCCC
Confidence 35999999999999999999999999999999999998641 12489999999887531 124579999999887
Q ss_pred CCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCccccccccc
Q 001400 221 VAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVG 300 (1085)
Q Consensus 221 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 300 (1085)
++. ||.||+.|+....+.... .. .....++++++.+||.+......
T Consensus 112 ~~~-tv~enl~~~~~~~~~~~~------------------~~--------------~~~~~~~~~l~~~~l~~~~~~~~- 157 (267)
T PRK14235 112 FPK-SIYENVAYGPRIHGLARS------------------KA--------------ELDEIVETSLRKAGLWEEVKDRL- 157 (267)
T ss_pred CCC-cHHHHHHHHHHhcccccc------------------hH--------------HHHHHHHHHHHHcCCchhhhHHh-
Confidence 774 999999886533211000 00 00123677888899864211111
Q ss_pred CcccccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEE
Q 001400 301 DEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVIL 380 (1085)
Q Consensus 301 ~~~~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~ 380 (1085)
+..++.|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++++ + .+|+.++|+.+++..++|++++
T Consensus 158 ~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~--~-~tiiivtH~~~~~~~~~d~v~~ 234 (267)
T PRK14235 158 HEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQ--N-YTIVIVTHSMQQAARVSQRTAF 234 (267)
T ss_pred hCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc--C-CeEEEEEcCHHHHHhhCCEEEE
Confidence 233457999999999999999999999999999999999999999999999854 3 4566678888999999999999
Q ss_pred ecCCeEEEecChhhHH
Q 001400 381 LSEGQIVYQGPRVSVL 396 (1085)
Q Consensus 381 L~~G~iv~~G~~~~~~ 396 (1085)
|++|+++.+|+.+++.
T Consensus 235 l~~G~i~~~g~~~~~~ 250 (267)
T PRK14235 235 FHLGNLVEVGDTEKMF 250 (267)
T ss_pred EECCEEEEeCCHHHHH
Confidence 9999999999887663
|
|
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-34 Score=310.78 Aligned_cols=195 Identities=27% Similarity=0.436 Sum_probs=157.7
Q ss_pred eEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCCh---hcccceEEEEccCCCCCCCCC
Q 001400 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFARISGYCEQNDIHSPGLT 918 (1085)
Q Consensus 842 ~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gy~~Q~~~~~~~~t 918 (1085)
..+|+|+||+|++|++++|+||||||||||+++|+|... +.+|+|.++|.++.. ...++.++|++|++.+++ .|
T Consensus 17 ~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~t 93 (220)
T cd03245 17 IPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYK--PTSGSVLLDGTDIRQLDPADLRRNIGYVPQDVTLFY-GT 93 (220)
T ss_pred cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCCeEEECCEEhHHCCHHHHHhhEEEeCCCCcccc-ch
Confidence 469999999999999999999999999999999999865 468999999987532 234567999999988776 69
Q ss_pred HHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccC------CCCCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q 001400 919 VLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIG------LPGINGLSTEQRKRLTIAVELVANPSIVFM 992 (1085)
Q Consensus 919 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~------~~~~~~LS~Gqrqrl~iA~aL~~~p~illl 992 (1085)
+.||+.+.... .. ...+.++++.+++.+..+.... ...+..||||||||++|||||+.+|++|+|
T Consensus 94 v~e~l~~~~~~-----~~----~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~llll 164 (220)
T cd03245 94 LRDNITLGAPL-----AD----DERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLL 164 (220)
T ss_pred HHHHhhcCCCC-----CC----HHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99999764211 11 1234567777787665544321 012357999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEecCcEEEEec
Q 001400 993 DEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAG 1052 (1085)
Q Consensus 993 DEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g 1052 (1085)
||||+|||+.++..+++.|+++++ +.|||++||+++. .+.+|++++|++ |++++.|
T Consensus 165 DEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~~--~~~~d~v~~l~~-g~i~~~~ 220 (220)
T cd03245 165 DEPTSAMDMNSEERLKERLRQLLG-DKTLIIITHRPSL--LDLVDRIIVMDS-GRIVADG 220 (220)
T ss_pred eCccccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCHHH--HHhCCEEEEEeC-CeEeecC
Confidence 999999999999999999999865 4899999999863 478999999985 6777643
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-34 Score=315.03 Aligned_cols=210 Identities=20% Similarity=0.310 Sum_probs=166.2
Q ss_pred eecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCC--CCceeeEEEECCccCCCC-----CCCceEEEEccCCCCC
Q 001400 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGH--HLQVSGKITYNGHGFKEF-----VPPRTSAYVSQQDWQV 221 (1085)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~--~~~~~G~i~~~G~~~~~~-----~~~~~~~yv~Q~d~~~ 221 (1085)
.+|+|+|++|++|++++|+|||||||||||++|+|.+++ ..+.+|+|+++|.++... ..++.++|++|++.++
T Consensus 26 ~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~ 105 (259)
T PRK14274 26 HALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVELRKNIGMVFQKGNPF 105 (259)
T ss_pred eeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHHHHhhceEEEecCCccc
Confidence 599999999999999999999999999999999999863 222489999999987421 1245799999998888
Q ss_pred CCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccC
Q 001400 222 AEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGD 301 (1085)
Q Consensus 222 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 301 (1085)
+. ||+||+.|.....+.... .+...+++.+++.+||.+...... +
T Consensus 106 ~~-tv~enl~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~l-~ 150 (259)
T PRK14274 106 PQ-SIFDNVAYGPRIHGTKNK---------------------------------KKLQEIVEKSLKDVALWDEVKDRL-H 150 (259)
T ss_pred cc-CHHHHHHhHHHhcCCCCH---------------------------------HHHHHHHHHHHHHcCCchhhhhhh-h
Confidence 75 999999876432211000 000123566788888853211111 2
Q ss_pred cccccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEe
Q 001400 302 EMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILL 381 (1085)
Q Consensus 302 ~~~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L 381 (1085)
...+.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++.. + .+++.++|+.+++.+++|++++|
T Consensus 151 ~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~-~tiiivtH~~~~~~~~~d~i~~l 227 (259)
T PRK14274 151 TQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKE--K-YTIVIVTHNMQQAARVSDQTAFF 227 (259)
T ss_pred CCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc--C-CEEEEEEcCHHHHHHhCCEEEEE
Confidence 34567999999999999999999999999999999999999999999999853 3 45666778888999999999999
Q ss_pred cCCeEEEecChhhHH
Q 001400 382 SEGQIVYQGPRVSVL 396 (1085)
Q Consensus 382 ~~G~iv~~G~~~~~~ 396 (1085)
++|+++.+|+++++.
T Consensus 228 ~~G~i~~~g~~~~~~ 242 (259)
T PRK14274 228 YMGELVECNDTNKMF 242 (259)
T ss_pred ECCEEEEECCHHHHh
Confidence 999999999988763
|
|
| >PRK14266 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-34 Score=312.69 Aligned_cols=209 Identities=24% Similarity=0.313 Sum_probs=166.0
Q ss_pred CCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCC--C-CeeeeEEEEcCccCCh-----hcccceEEEEccCC
Q 001400 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKT--G-GIIEGDIYISGYPKRQ-----ETFARISGYCEQND 911 (1085)
Q Consensus 840 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~--~-~~~~G~i~i~g~~~~~-----~~~~~~~gy~~Q~~ 911 (1085)
++..+|+|+||+|++||+++|+|+||||||||+++|+|... + .+.+|+|.++|.++.. ...++.++|++|++
T Consensus 14 ~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~ 93 (250)
T PRK14266 14 DDAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVELRKKVGMVFQKP 93 (250)
T ss_pred CCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHHHhhheEEEecCC
Confidence 44679999999999999999999999999999999999642 1 1358999999987642 23466799999998
Q ss_pred CCCCCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEE
Q 001400 912 IHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVF 991 (1085)
Q Consensus 912 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~ill 991 (1085)
.+++. |+.||+.+....... .......+.+.++++.+++.+........ .+..||+|||||++|||||+.+|+||+
T Consensus 94 ~~~~~-t~~~nl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~~~-~~~~LS~Gq~qrv~laral~~~p~lll 169 (250)
T PRK14266 94 NPFPK-SIFDNVAYGLRIHGE--DDEDFIEERVEESLKAAALWDEVKDKLDK-SALGLSGGQQQRLCIARTIAVSPEVIL 169 (250)
T ss_pred ccCcc-hHHHHHHhHHhhcCC--CCHHHHHHHHHHHHHHcCCchhHHHHHhC-CcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 88875 999999875422211 11222345677888888875321111111 235799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCC
Q 001400 992 MDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1085)
Q Consensus 992 lDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~ 1055 (1085)
|||||+|||+.++..+.+.|++++ ++.|||++||+++ ++...+|++++|++ |++++.|+..
T Consensus 170 lDEP~~gLD~~~~~~l~~~l~~~~-~~~tiii~sh~~~-~~~~~~~~i~~l~~-G~i~~~g~~~ 230 (250)
T PRK14266 170 MDEPCSALDPISTTKIEDLIHKLK-EDYTIVIVTHNMQ-QATRVSKYTSFFLN-GEIIESGLTD 230 (250)
T ss_pred EcCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEECCHH-HHHhhcCEEEEEEC-CeEEEeCCHH
Confidence 999999999999999999999985 4899999999986 57888999999975 7898888753
|
|
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-34 Score=318.17 Aligned_cols=197 Identities=21% Similarity=0.295 Sum_probs=162.0
Q ss_pred eEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCCh---hcccceEEEEccCCCCCCCCC
Q 001400 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFARISGYCEQNDIHSPGLT 918 (1085)
Q Consensus 842 ~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gy~~Q~~~~~~~~t 918 (1085)
..+|+||||+|++||+++|+|+||||||||+++|+|... .+|+|+++|.++.. ...++.++|++|++.+++. |
T Consensus 17 ~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~---~~G~I~i~g~~i~~~~~~~lr~~i~~v~q~~~lf~~-t 92 (275)
T cd03289 17 NAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN---TEGDIQIDGVSWNSVPLQKWRKAFGVIPQKVFIFSG-T 92 (275)
T ss_pred CcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC---CCcEEEECCEEhhhCCHHHHhhhEEEECCCcccchh-h
Confidence 458999999999999999999999999999999999864 37999999987642 3456789999999998875 9
Q ss_pred HHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCC------CCCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q 001400 919 VLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGL------PGINGLSTEQRKRLTIAVELVANPSIVFM 992 (1085)
Q Consensus 919 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~------~~~~~LS~Gqrqrl~iA~aL~~~p~illl 992 (1085)
+++|+..... .. .+.++++++.+++.+..+..... .+...||+|||||++|||||+.+|+||+|
T Consensus 93 v~~nl~~~~~------~~----~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~illl 162 (275)
T cd03289 93 FRKNLDPYGK------WS----DEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLL 162 (275)
T ss_pred HHHHhhhccC------CC----HHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9999953210 11 13467788888887655443221 12346999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCCC
Q 001400 993 DEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGS 1056 (1085)
Q Consensus 993 DEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~~ 1056 (1085)
||||++||+.+...+++.|+++. .++|||+|||+++ ....||++++|++ |++++.|+..+
T Consensus 163 DEpts~LD~~~~~~l~~~l~~~~-~~~tii~isH~~~--~i~~~dri~vl~~-G~i~~~g~~~~ 222 (275)
T cd03289 163 DEPSAHLDPITYQVIRKTLKQAF-ADCTVILSEHRIE--AMLECQRFLVIEE-NKVRQYDSIQK 222 (275)
T ss_pred ECccccCCHHHHHHHHHHHHHhc-CCCEEEEEECCHH--HHHhCCEEEEecC-CeEeecCCHHH
Confidence 99999999999999999999874 5899999999985 3356999999985 78999987644
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-34 Score=314.47 Aligned_cols=211 Identities=23% Similarity=0.316 Sum_probs=167.6
Q ss_pred eecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCC--ceeeEEEECCccCCCC-----CCCceEEEEccCCCCC
Q 001400 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHL--QVSGKITYNGHGFKEF-----VPPRTSAYVSQQDWQV 221 (1085)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~--~~~G~i~~~G~~~~~~-----~~~~~~~yv~Q~d~~~ 221 (1085)
.+|+|+|+.|++|++++|+|||||||||||++|+|.+.|.. +.+|+|.++|.++... ..++.++|++|++.++
T Consensus 18 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 97 (258)
T PRK14241 18 HAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAVRRTIGMVFQRPNPF 97 (258)
T ss_pred eeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHHHhcceEEEccccccC
Confidence 59999999999999999999999999999999999986421 2499999999876421 1245799999999889
Q ss_pred CCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccC
Q 001400 222 AEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGD 301 (1085)
Q Consensus 222 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 301 (1085)
+.+||+||+.++....+.... ......++.+++.+||........ +
T Consensus 98 ~~~tv~~nl~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-~ 143 (258)
T PRK14241 98 PTMSIRDNVVAGLKLNGVRNK---------------------------------KDLDELVEKSLRGANLWNEVKDRL-D 143 (258)
T ss_pred CCCcHHHHHHHHHHhcCCCCH---------------------------------HHHHHHHHHHHHHcCCchhhhhHh-h
Confidence 999999999876432210000 001123677788888842111111 2
Q ss_pred cccccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEe
Q 001400 302 EMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILL 381 (1085)
Q Consensus 302 ~~~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L 381 (1085)
..+..|||||||||+|||||+.+|++++|||||+|||+.++..+.+.|+++++ + ++|+.++|+..++.+++|+|++|
T Consensus 144 ~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~-~tviivsH~~~~~~~~~d~i~~l 220 (258)
T PRK14241 144 KPGGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQ--D-YTIVIVTHNMQQAARVSDQTAFF 220 (258)
T ss_pred CCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc--C-CEEEEEecCHHHHHHhCCEEEEE
Confidence 33457999999999999999999999999999999999999999999999853 3 45666888899999999999999
Q ss_pred c------CCeEEEecChhhHH
Q 001400 382 S------EGQIVYQGPRVSVL 396 (1085)
Q Consensus 382 ~------~G~iv~~G~~~~~~ 396 (1085)
+ +|++++.|+.+++.
T Consensus 221 ~~~~~~~~g~i~~~~~~~~~~ 241 (258)
T PRK14241 221 NLEATGKPGRLVEIDDTEKIF 241 (258)
T ss_pred ecccCCCCceEEecCCHHHHH
Confidence 7 79999999987764
|
|
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-32 Score=343.40 Aligned_cols=211 Identities=28% Similarity=0.473 Sum_probs=173.4
Q ss_pred eeeeccceeeeeccccccccccccCCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccC
Q 001400 816 SMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPK 895 (1085)
Q Consensus 816 ~~~~~~~~y~v~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 895 (1085)
.+.++|++|.++. .+..+|+|+|++|+|||++||+|+||||||||+++|+|..+ +.+|+|.+||.++
T Consensus 463 ~I~~~~vsf~Y~~-----------~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~--p~~G~I~idg~~l 529 (694)
T TIGR03375 463 EIEFRNVSFAYPG-----------QETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQ--PTEGSVLLDGVDI 529 (694)
T ss_pred eEEEEEEEEEeCC-----------CCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEEh
Confidence 5778888877631 23469999999999999999999999999999999999876 5689999999986
Q ss_pred Ch---hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCccc-------ccccCCCC
Q 001400 896 RQ---ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLS-------GALIGLPG 965 (1085)
Q Consensus 896 ~~---~~~~~~~gy~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~ 965 (1085)
++ ..+++.++||+|++.++.+ |++||+.++. + +.+ ++.++++++..++.+.. +..++..
T Consensus 530 ~~~~~~~lr~~i~~v~Q~~~lf~~-TI~eNi~~~~----~-~~~----~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~- 598 (694)
T TIGR03375 530 RQIDPADLRRNIGYVPQDPRLFYG-TLRDNIALGA----P-YAD----DEEILRAAELAGVTEFVRRHPDGLDMQIGER- 598 (694)
T ss_pred hhCCHHHHHhccEEECCChhhhhh-hHHHHHhCCC----C-CCC----HHHHHHHHHHcChHHHHHhCcccccceecCC-
Confidence 53 4678899999999998865 9999998652 1 111 23456777777665432 3333333
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEecC
Q 001400 966 INGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 1045 (1085)
Q Consensus 966 ~~~LS~Gqrqrl~iA~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~g 1045 (1085)
+.+||||||||++|||||+++|+||+||||||+||+++++.+++.|+++. +++|+|++||+++ ..+.||++++|++
T Consensus 599 G~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~-~~~T~iiItHrl~--~~~~~D~iivl~~- 674 (694)
T TIGR03375 599 GRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWL-AGKTLVLVTHRTS--LLDLVDRIIVMDN- 674 (694)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEecCHH--HHHhCCEEEEEeC-
Confidence 35799999999999999999999999999999999999999999999975 5899999999986 5678999999985
Q ss_pred cEEEEecCC
Q 001400 1046 GELIYAGPL 1054 (1085)
Q Consensus 1046 G~~~~~g~~ 1054 (1085)
|++++.|+-
T Consensus 675 G~i~e~G~~ 683 (694)
T TIGR03375 675 GRIVADGPK 683 (694)
T ss_pred CEEEeeCCH
Confidence 789988873
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=354.75 Aligned_cols=211 Identities=27% Similarity=0.426 Sum_probs=173.1
Q ss_pred ceeeeccceeeeeccccccccccccCCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCcc
Q 001400 815 LSMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYP 894 (1085)
Q Consensus 815 ~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~ 894 (1085)
..+.|+|++|.++. ++++|+|+||+++|||++||+||||||||||+++|.|... +.+|+|.+||.+
T Consensus 327 ~~I~f~~vsf~y~~------------~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~--~~~G~I~idg~d 392 (567)
T COG1132 327 GSIEFENVSFSYPG------------KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYD--PTSGEILIDGID 392 (567)
T ss_pred CeEEEEEEEEEcCC------------CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCC--CCCCeEEECCEe
Confidence 34777887776631 5679999999999999999999999999999999999876 468999999988
Q ss_pred CCh---hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCc-------ccccccCCC
Q 001400 895 KRQ---ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTS-------LSGALIGLP 964 (1085)
Q Consensus 895 ~~~---~~~~~~~gy~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~~~ 964 (1085)
+++ ...++.++||+|++.++. -|++||+.++.. +.. ++.++++++..++.+ -.|..+|..
T Consensus 393 I~~i~~~~lr~~I~~V~Qd~~LF~-~TI~~NI~~g~~-----~at----~eei~~a~k~a~~~d~I~~lp~g~dt~vge~ 462 (567)
T COG1132 393 IRDISLDSLRKRIGIVSQDPLLFS-GTIRENIALGRP-----DAT----DEEIEEALKLANAHEFIANLPDGYDTIVGER 462 (567)
T ss_pred hhhcCHHHHHHhccEEcccceeec-ccHHHHHhcCCC-----CCC----HHHHHHHHHHhChHHHHHhCcccccceecCC
Confidence 653 567889999999999987 699999998631 111 123455555444332 345555533
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEec
Q 001400 965 GINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKR 1044 (1085)
Q Consensus 965 ~~~~LS~Gqrqrl~iA~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~ 1044 (1085)
+..||||||||++||||++++|+||+||||||+||+++...|++.++++. +++|+|+++|+++ ..+.+|+|++|++
T Consensus 463 -G~~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~-~~rT~iiIaHRls--ti~~aD~IiVl~~ 538 (567)
T COG1132 463 -GVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLL-KGRTTLIIAHRLS--TIKNADRIIVLDN 538 (567)
T ss_pred -CccCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHh-cCCEEEEEeccHh--HHHhCCEEEEEEC
Confidence 45799999999999999999999999999999999999999999999876 6789999999986 4566999999985
Q ss_pred CcEEEEecCC
Q 001400 1045 GGELIYAGPL 1054 (1085)
Q Consensus 1045 gG~~~~~g~~ 1054 (1085)
|++++.|+-
T Consensus 539 -G~i~e~G~h 547 (567)
T COG1132 539 -GRIVERGTH 547 (567)
T ss_pred -CEEEEecCH
Confidence 689999875
|
|
| >COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-34 Score=274.26 Aligned_cols=212 Identities=25% Similarity=0.354 Sum_probs=178.3
Q ss_pred ccccccccCCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccC--C----h---hcccc
Q 001400 832 LKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPK--R----Q---ETFAR 902 (1085)
Q Consensus 832 ~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~--~----~---~~~~~ 902 (1085)
+++.+..|+..++|-||+++...||.+.|+||||||||||+++|.-... +.+|+..|-|... + . ...++
T Consensus 5 v~~in~~yg~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~--p~sg~l~ia~~~fd~s~~~~~k~i~~lr~ 82 (242)
T COG4161 5 LNGINCFYGAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEM--PRSGTLNIAGNHFDFSKTPSDKAIRDLRR 82 (242)
T ss_pred EcccccccccchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhC--CCCCeEEecccccccccCccHHHHHHHHH
Confidence 3444455677899999999999999999999999999999999986554 4589988877431 1 1 24677
Q ss_pred eEEEEccCCCCCCCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHH
Q 001400 903 ISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVE 982 (1085)
Q Consensus 903 ~~gy~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~a 982 (1085)
.+|+|+|+-.++|.+||.|||.-... +. ...++++.+....++++.+.|.+++|... -.|||||+||++||||
T Consensus 83 ~vgmvfqqy~lwphltv~enlieap~-kv-~gl~~~qa~~~a~ellkrlrl~~~adr~p-----lhlsggqqqrvaiara 155 (242)
T COG4161 83 NVGMVFQQYNLWPHLTVQENLIEAPC-RV-LGLSKDQALARAEKLLKRLRLKPYADRYP-----LHLSGGQQQRVAIARA 155 (242)
T ss_pred hhhhhhhhhccCchhHHHHHHHhhhH-HH-hCCCHHHHHHHHHHHHHHhccccccccCc-----eecccchhhhHHHHHH
Confidence 89999999999999999999965432 21 23455666777889999999999998753 3699999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCC
Q 001400 983 LVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1085)
Q Consensus 983 L~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~ 1054 (1085)
|+.+|++|++||||++|||+-...+.++|+++...|.|-+++||..+. ..+.+.+++.|.+ |+++..|+-
T Consensus 156 lmmkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~v-a~k~as~vvyme~-g~ive~g~a 225 (242)
T COG4161 156 LMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEV-ARKTASRVVYMEN-GHIVEQGDA 225 (242)
T ss_pred HhcCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehhH-HHhhhhheEeeec-CeeEeecch
Confidence 999999999999999999999999999999999999999999998764 5567899999985 789998864
|
|
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-34 Score=313.21 Aligned_cols=212 Identities=21% Similarity=0.298 Sum_probs=167.8
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhC--CCCceeeEEEECCccCCCC-----CCCceEEEEccCCCC
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLG--HHLQVSGKITYNGHGFKEF-----VPPRTSAYVSQQDWQ 220 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~--~~~~~~G~i~~~G~~~~~~-----~~~~~~~yv~Q~d~~ 220 (1085)
+++|+|+|+.|++|++++|+||||||||||+++|+|... +..+.+|+|+++|.++... ..++.++|++|++.+
T Consensus 18 ~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~ 97 (251)
T PRK14244 18 KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAKVGMVFQKPNP 97 (251)
T ss_pred eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHhhhEEEEecCccc
Confidence 469999999999999999999999999999999999875 2213589999999876432 124579999999887
Q ss_pred CCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCccccccccc
Q 001400 221 VAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVG 300 (1085)
Q Consensus 221 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 300 (1085)
++. ||+||+.+.....+.....+ .....++++++.+||.+...+.+
T Consensus 98 ~~~-tv~~ni~~~~~~~~~~~~~~--------------------------------~~~~~~~~~l~~~~l~~~~~~~~- 143 (251)
T PRK14244 98 FPK-SIYDNVAYGPKLHGLAKNKK--------------------------------KLDEIVEKSLTSVGLWEELGDRL- 143 (251)
T ss_pred ccC-CHHHHHHHHHHhcCCCCCHH--------------------------------HHHHHHHHHHHHcCCCchhhhHh-
Confidence 875 99999987633221100000 00123667888999865322222
Q ss_pred CcccccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEE
Q 001400 301 DEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVIL 380 (1085)
Q Consensus 301 ~~~~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~ 380 (1085)
+..+..|||||||||+|||+|+.+|++++|||||+|||+.++..+.+.|+++.+ + .+|+.++|...++.+++|+|++
T Consensus 144 ~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~-~tiiiisH~~~~~~~~~d~i~~ 220 (251)
T PRK14244 144 KDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKK--N-FTIIVVTHSMKQAKKVSDRVAF 220 (251)
T ss_pred hcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--C-CeEEEEeCCHHHHHhhcCEEEE
Confidence 234567999999999999999999999999999999999999999999998843 3 5566688888999999999999
Q ss_pred ecCCeEEEecChhhHH
Q 001400 381 LSEGQIVYQGPRVSVL 396 (1085)
Q Consensus 381 L~~G~iv~~G~~~~~~ 396 (1085)
|++|++++.|+.+++.
T Consensus 221 l~~G~i~~~~~~~~~~ 236 (251)
T PRK14244 221 FQSGRIVEYNTTQEIF 236 (251)
T ss_pred EECCEEEEeCCHHHHh
Confidence 9999999999987663
|
|
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-33 Score=311.57 Aligned_cols=210 Identities=20% Similarity=0.261 Sum_probs=163.7
Q ss_pred eecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhC--CCCceeeEEEECCccCCCC-----CCCceEEEEccCCCCC
Q 001400 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLG--HHLQVSGKITYNGHGFKEF-----VPPRTSAYVSQQDWQV 221 (1085)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~--~~~~~~G~i~~~G~~~~~~-----~~~~~~~yv~Q~d~~~ 221 (1085)
.+|+|+|+.|++|++++|+|||||||||||++|+|.++ +..+.+|+|.++|.++... ..++.++|++|++.++
T Consensus 35 ~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~ 114 (268)
T PRK14248 35 RAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVVNLRREIGMVFQKPNPF 114 (268)
T ss_pred eeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHHHHhccEEEEecCCccC
Confidence 59999999999999999999999999999999999764 2113489999999887532 1245799999999878
Q ss_pred CCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccC
Q 001400 222 AEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGD 301 (1085)
Q Consensus 222 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 301 (1085)
+. ||+||+.+.....+.. ... ..+..+..+++.+++........ +
T Consensus 115 ~~-tv~enl~~~~~~~~~~--~~~-------------------------------~~~~~~~~~l~~~~l~~~~~~~~-~ 159 (268)
T PRK14248 115 PK-SIYNNITHALKYAGER--RKS-------------------------------VLDEIVEESLTKAALWDEVKDRL-H 159 (268)
T ss_pred cc-cHHHHHHHHHHhcCCC--cHH-------------------------------HHHHHHHHHHHHcCCCcchHHHH-h
Confidence 75 9999998754321100 000 00112455677777742111111 2
Q ss_pred cccccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEe
Q 001400 302 EMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILL 381 (1085)
Q Consensus 302 ~~~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L 381 (1085)
..+..||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++.+ + ++|+.++|+.+++.+++|+|++|
T Consensus 160 ~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~-~tiii~tH~~~~~~~~~d~v~~l 236 (268)
T PRK14248 160 SSALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKE--E-YSIIIVTHNMQQALRVSDRTAFF 236 (268)
T ss_pred cCcccCCHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc--C-CEEEEEEeCHHHHHHhCCEEEEE
Confidence 34457999999999999999999999999999999999999999999999854 3 45666788888999999999999
Q ss_pred cCCeEEEecChhhHH
Q 001400 382 SEGQIVYQGPRVSVL 396 (1085)
Q Consensus 382 ~~G~iv~~G~~~~~~ 396 (1085)
++|++++.|+.+++.
T Consensus 237 ~~G~i~~~~~~~~~~ 251 (268)
T PRK14248 237 LNGDLVEYDQTEQIF 251 (268)
T ss_pred ECCEEEEeCCHHHHH
Confidence 999999999987763
|
|
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-34 Score=311.39 Aligned_cols=205 Identities=26% Similarity=0.392 Sum_probs=158.5
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCC---CCceEEEEccCCCCCCCC
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV---PPRTSAYVSQQDWQVAEM 224 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~---~~~~~~yv~Q~d~~~~~l 224 (1085)
+.+|+|+|+++++|++++|+|||||||||||++|+|.++|. +|+|.++|.++.... .++.++|++|++.+++ .
T Consensus 15 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~ 90 (237)
T cd03252 15 PVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPE---NGRVLVDGHDLALADPAWLRRQVGVVLQENVLFN-R 90 (237)
T ss_pred ccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC---CCEEEECCeehHhcCHHHHhhcEEEEcCCchhcc-c
Confidence 45999999999999999999999999999999999999876 999999998765332 2457999999987664 7
Q ss_pred CHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHh--CCcccccccccCc
Q 001400 225 TVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKIL--GLDTCADTLVGDE 302 (1085)
Q Consensus 225 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~l--gL~~~~dt~vg~~ 302 (1085)
||+||+.+... . ...+...+.. + ....+..++.+ |++...+ .
T Consensus 91 tv~~nl~~~~~--~--~~~~~~~~~~------------------~---------~~~~~~~l~~l~~~~~~~~~-----~ 134 (237)
T cd03252 91 SIRDNIALADP--G--MSMERVIEAA------------------K---------LAGAHDFISELPEGYDTIVG-----E 134 (237)
T ss_pred hHHHHhhccCC--C--CCHHHHHHHH------------------H---------HcCcHHHHHhCcccccchhh-----c
Confidence 99999987431 1 0000000000 0 00123344444 4443333 3
Q ss_pred ccccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEec
Q 001400 303 MLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLS 382 (1085)
Q Consensus 303 ~~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~ 382 (1085)
.+..|||||||||+|||||+.+|++++|||||+|||+.++..+.+.|+++++ + .+|+.++|+.+++ ..+|++++|+
T Consensus 135 ~~~~LSgG~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~-~tiii~sH~~~~~-~~~d~v~~l~ 210 (237)
T cd03252 135 QGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDICA--G-RTVIIIAHRLSTV-KNADRIIVME 210 (237)
T ss_pred CCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC--C-CEEEEEeCCHHHH-HhCCEEEEEE
Confidence 4467999999999999999999999999999999999999999999998852 4 4555577777777 4699999999
Q ss_pred CCeEEEecChhhHH
Q 001400 383 EGQIVYQGPRVSVL 396 (1085)
Q Consensus 383 ~G~iv~~G~~~~~~ 396 (1085)
+|++++.|+.+++.
T Consensus 211 ~G~i~~~~~~~~~~ 224 (237)
T cd03252 211 KGRIVEQGSHDELL 224 (237)
T ss_pred CCEEEEEcCHHHHH
Confidence 99999999987764
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >PRK09580 sufC cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-34 Score=311.50 Aligned_cols=210 Identities=24% Similarity=0.312 Sum_probs=161.4
Q ss_pred cCCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCCh---hc-ccceEEEEccCCCCC
Q 001400 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ET-FARISGYCEQNDIHS 914 (1085)
Q Consensus 839 ~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~---~~-~~~~~gy~~Q~~~~~ 914 (1085)
+++..+|+|+||+|++|++++|+|+||||||||+++|+|.....+.+|+|.++|.++.. .. .++.++|++|++.++
T Consensus 11 ~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~ 90 (248)
T PRK09580 11 VEDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEGIFMAFQYPVEI 90 (248)
T ss_pred eCCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcceEEEecCchhc
Confidence 34457999999999999999999999999999999999974211568999999987542 11 235699999998888
Q ss_pred CCCCHHHHHHHhhh-hcC--CCc-ccHHHHHHHHHHHHHHcCCC-cccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCE
Q 001400 915 PGLTVLESLLFSAW-LRL--PSE-IELETQRAFVEEVMELVELT-SLSGALIGLPGINGLSTEQRKRLTIAVELVANPSI 989 (1085)
Q Consensus 915 ~~~tv~e~l~~~~~-~~~--~~~-~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~i 989 (1085)
+.+|+.+++.+... ++. ... .......+.++++++.+++. +..+... ...||+|||||++|||||+.+|+|
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~----~~~LS~G~~qrv~laral~~~p~i 166 (248)
T PRK09580 91 PGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSV----NVGFSGGEKKRNDILQMAVLEPEL 166 (248)
T ss_pred cchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCC----CCCCCHHHHHHHHHHHHHHcCCCE
Confidence 87777766543211 110 000 11112245567788888884 3333322 126999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHh-cCEEEEEecCcEEEEecCC
Q 001400 990 VFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFES-FDELLFMKRGGELIYAGPL 1054 (1085)
Q Consensus 990 lllDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~-~d~il~l~~gG~~~~~g~~ 1054 (1085)
|+|||||+|||+.++..+.+.|+++.+.|+|||++||+++. +... +|++++|+ +|++++.|+.
T Consensus 167 llLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~-~~~~~~d~i~~l~-~g~i~~~g~~ 230 (248)
T PRK09580 167 CILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRI-LDYIKPDYVHVLY-QGRIVKSGDF 230 (248)
T ss_pred EEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-HHhhhCCEEEEEE-CCeEEEeCCH
Confidence 99999999999999999999999987778999999999763 4444 79999997 4788888864
|
|
| >TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-34 Score=302.91 Aligned_cols=186 Identities=25% Similarity=0.304 Sum_probs=154.5
Q ss_pred cCCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCCh--hcccceEEEEccCCCCCCC
Q 001400 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ--ETFARISGYCEQNDIHSPG 916 (1085)
Q Consensus 839 ~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~--~~~~~~~gy~~Q~~~~~~~ 916 (1085)
+++..+|+|+||+|++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.+... ..+++.++|++|++.+++.
T Consensus 10 ~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~ 87 (198)
T TIGR01189 10 RGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLR--PDSGEVRWNGTALAEQRDEPHRNILYLGHLPGLKPE 87 (198)
T ss_pred ECCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCccEEEECCEEcccchHHhhhheEEeccCcccccC
Confidence 345679999999999999999999999999999999999865 468999999987532 2345679999999888888
Q ss_pred CCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Q 001400 917 LTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPT 996 (1085)
Q Consensus 917 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEPt 996 (1085)
+|+.||+.+....+.. . .+.++++++.+++.+..+... ..||+|||||++|||||+.+|++|+|||||
T Consensus 88 ~tv~~~l~~~~~~~~~-----~--~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~llllDEPt 155 (198)
T TIGR01189 88 LSALENLHFWAAIHGG-----A--QRTIEDALAAVGLTGFEDLPA-----AQLSAGQQRRLALARLWLSRAPLWILDEPT 155 (198)
T ss_pred CcHHHHHHHHHHHcCC-----c--HHHHHHHHHHcCCHHHhcCCh-----hhcCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 9999999875432211 1 234678899999877655443 579999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEE
Q 001400 997 SGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLF 1041 (1085)
Q Consensus 997 sgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~ 1041 (1085)
+|||+.++..+++.|+++.++|.|||++||++. ++ .+++++.
T Consensus 156 ~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~-~~--~~~~~~~ 197 (198)
T TIGR01189 156 TALDKAGVALLAGLLRAHLARGGIVLLTTHQDL-GL--VEARELR 197 (198)
T ss_pred cCCCHHHHHHHHHHHHHHHhCCCEEEEEEcccc-cc--cceEEee
Confidence 999999999999999998777999999999974 22 3466543
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. |
| >KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-35 Score=320.84 Aligned_cols=210 Identities=24% Similarity=0.384 Sum_probs=171.6
Q ss_pred cceeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCC---CCCceEEEEccCCCCCC
Q 001400 146 SKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEF---VPPRTSAYVSQQDWQVA 222 (1085)
Q Consensus 146 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~---~~~~~~~yv~Q~d~~~~ 222 (1085)
+.+++|+||||++.||+.+|++||||+||||+++.|-...+-. +|.|+++|+++... ..++.||.||||..+|.
T Consensus 549 p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~---sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFN 625 (790)
T KOG0056|consen 549 PGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVN---SGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFN 625 (790)
T ss_pred CCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhcc---CceEEEcCchHHHHHHHHHHHhcCcccCcceeec
Confidence 3457999999999999999999999999999999999988765 99999999998654 34678999999999777
Q ss_pred CCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCc
Q 001400 223 EMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDE 302 (1085)
Q Consensus 223 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 302 (1085)
+ |+..||.|+-. +..-+.+.+++ |++ ...| +++++++.++|+||++
T Consensus 626 d-TI~yNIryak~----~AsneevyaAA------------------kAA--------~IHd---rIl~fPegY~t~VGER 671 (790)
T KOG0056|consen 626 D-TILYNIRYAKP----SASNEEVYAAA------------------KAA--------QIHD---RILQFPEGYNTRVGER 671 (790)
T ss_pred c-eeeeheeecCC----CCChHHHHHHH------------------HHh--------hHHH---HHhcCchhhhhhhhhc
Confidence 6 99999988631 11111111111 110 1122 3688999999999998
Q ss_pred ccccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEec
Q 001400 303 MLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLS 382 (1085)
Q Consensus 303 ~~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~ 382 (1085)
+.+ |||||||||+|||+++..|.+++|||.||+||..+..+|..+|.+++. ++|+|+.. |..+ +.--+|.|++++
T Consensus 672 GLk-LSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca--~RTtIVvA-HRLS-TivnAD~ILvi~ 746 (790)
T KOG0056|consen 672 GLK-LSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCA--NRTTIVVA-HRLS-TIVNADLILVIS 746 (790)
T ss_pred ccc-cCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhc--CCceEEEe-eeeh-heecccEEEEEe
Confidence 886 999999999999999999999999999999999999999999999985 57777744 4333 344679999999
Q ss_pred CCeEEEecChhhHHH
Q 001400 383 EGQIVYQGPRVSVLD 397 (1085)
Q Consensus 383 ~G~iv~~G~~~~~~~ 397 (1085)
+|+|++.|.+++++.
T Consensus 747 ~G~IvErG~HeeLl~ 761 (790)
T KOG0056|consen 747 NGRIVERGRHEELLK 761 (790)
T ss_pred CCeEeecCcHHHHHh
Confidence 999999999999874
|
|
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-34 Score=360.95 Aligned_cols=207 Identities=27% Similarity=0.366 Sum_probs=165.1
Q ss_pred eecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCC---CceEEEEccCCCCCCCCC
Q 001400 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP---PRTSAYVSQQDWQVAEMT 225 (1085)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~lT 225 (1085)
++|+|+|++|+||+.++|+||||||||||+++|+|+++|. +|+|++||.++.+... ++.++||+|++.+|+ .|
T Consensus 488 ~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~---~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~-gT 563 (708)
T TIGR01193 488 NILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQAR---SGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFS-GS 563 (708)
T ss_pred cceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCC---CcEEEECCEEHHHcCHHHHHHheEEEecCceehh-HH
Confidence 5999999999999999999999999999999999999886 9999999998876643 578999999998776 59
Q ss_pred HHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCcccc
Q 001400 226 VRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLK 305 (1085)
Q Consensus 226 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 305 (1085)
|+|||.++.+. ....+.+.+++ +.+. .++.+ ..|+...||.||+. ..
T Consensus 564 I~eNi~l~~~~---~~~~~~i~~a~------------------~~a~---------l~~~i--~~lp~gldt~i~e~-G~ 610 (708)
T TIGR01193 564 ILENLLLGAKE---NVSQDEIWAAC------------------EIAE---------IKDDI--ENMPLGYQTELSEE-GS 610 (708)
T ss_pred HHHHHhccCCC---CCCHHHHHHHH------------------HHhC---------CHHHH--HhcccccCcEecCC-CC
Confidence 99999875211 00011111111 0000 11111 24677889999974 46
Q ss_pred cCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEecCCe
Q 001400 306 GISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQ 385 (1085)
Q Consensus 306 ~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~~G~ 385 (1085)
+||||||||++||||++.+|++|+||||||+||+.+...+.+.|+++ .++|+|+ ++|..+ +...+|+|++|++|+
T Consensus 611 ~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~---~~~T~Ii-itHr~~-~~~~~D~i~~l~~G~ 685 (708)
T TIGR01193 611 SISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL---QDKTIIF-VAHRLS-VAKQSDKIIVLDHGK 685 (708)
T ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh---cCCEEEE-EecchH-HHHcCCEEEEEECCE
Confidence 89999999999999999999999999999999999999999999874 2455544 556554 567899999999999
Q ss_pred EEEecChhhHHH
Q 001400 386 IVYQGPRVSVLD 397 (1085)
Q Consensus 386 iv~~G~~~~~~~ 397 (1085)
+++.|+++++++
T Consensus 686 i~~~G~~~~L~~ 697 (708)
T TIGR01193 686 IIEQGSHDELLD 697 (708)
T ss_pred EEEECCHHHHHh
Confidence 999999998864
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-34 Score=306.83 Aligned_cols=211 Identities=24% Similarity=0.334 Sum_probs=167.8
Q ss_pred EEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCChhcccceEEEEccCCCCC--CCCCHHHHHHHhh
Q 001400 850 GAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHS--PGLTVLESLLFSA 927 (1085)
Q Consensus 850 ~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gy~~Q~~~~~--~~~tv~e~l~~~~ 927 (1085)
|+|++||++||+|+||||||||+++|+|..+ +.+|+|.++|.+... .++.++|++|++.++ ...|+.||+.+..
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~--~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~ 76 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIP--PAKGTVKVAGASPGK--GWRHIGYVPQRHEFAWDFPISVAHTVMSGR 76 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCccchH--hhCcEEEecccccccCCCCccHHHHHHhcc
Confidence 4688999999999999999999999999866 468999999987532 356799999998664 3479999998753
Q ss_pred hhcC-CCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHH
Q 001400 928 WLRL-PSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAI 1006 (1085)
Q Consensus 928 ~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEPtsgLD~~~~~~ 1006 (1085)
.... ............+.++++.+++.+..+..+ .+||+|||||++|||||+.+|++|||||||+|||+.++..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~ 151 (223)
T TIGR03771 77 TGHIGWLRRPCVADFAAVRDALRRVGLTELADRPV-----GELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQEL 151 (223)
T ss_pred ccccccccCCcHHHHHHHHHHHHHhCCchhhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHH
Confidence 2110 000011223345788999999976665543 4799999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCCC--chHHHHHHHHhccccc
Q 001400 1007 VMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGS--KSCELIKYFEVESFMF 1072 (1085)
Q Consensus 1007 i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~~--~~~~~~~~~~~~~g~~ 1072 (1085)
+.+.|+++.++|.|||++||+++ ++.+.+|+++++ + |++++.|+..+ .++.+.+.|...||-|
T Consensus 152 l~~~l~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l-~-G~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (223)
T TIGR03771 152 LTELFIELAGAGTAILMTTHDLA-QAMATCDRVVLL-N-GRVIADGTPQQLQDPAPWMTTFGVSDSSP 216 (223)
T ss_pred HHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEE-C-CEEEeecCHHHhcChHHHHHHhCCCCcch
Confidence 99999998777999999999986 477889999998 5 79999887654 3455666676555554
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown. |
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=312.65 Aligned_cols=213 Identities=27% Similarity=0.372 Sum_probs=169.3
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCC-----CceeeEEEECCccCCCCC---CCceEEEEccCCC
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHH-----LQVSGKITYNGHGFKEFV---PPRTSAYVSQQDW 219 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~-----~~~~G~i~~~G~~~~~~~---~~~~~~yv~Q~d~ 219 (1085)
+.+|+|+|+.|++|++++|+|||||||||||++|+|.+++. ...+|+|.++|.++.... .++.++|++|++.
T Consensus 14 ~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~v~q~~~ 93 (272)
T PRK13547 14 RAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPRLARLRAVLPQAAQ 93 (272)
T ss_pred EeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHHHHHhhcEEecccCC
Confidence 36999999999999999999999999999999999998763 012899999998875432 2346899999987
Q ss_pred CCCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccc
Q 001400 220 QVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLV 299 (1085)
Q Consensus 220 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~v 299 (1085)
.++.+||+||+.++...... ... ... ......++.+++.+||+...++.+
T Consensus 94 ~~~~~tv~e~l~~~~~~~~~--~~~-------------~~~---------------~~~~~~~~~~l~~~~l~~~~~~~~ 143 (272)
T PRK13547 94 PAFAFSAREIVLLGRYPHAR--RAG-------------ALT---------------HRDGEIAWQALALAGATALVGRDV 143 (272)
T ss_pred CCCCCcHHHHHhhccccccc--ccc-------------cCC---------------HHHHHHHHHHHHHcCcHhhhcCCc
Confidence 66679999999875311000 000 000 001224678899999987655544
Q ss_pred cCcccccCchhhhhHHHHHHHHh---------CCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhH
Q 001400 300 GDEMLKGISGGQKKRLTTGELLV---------GPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPE 370 (1085)
Q Consensus 300 g~~~~~~LSGGqkqRvsia~al~---------~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~ 370 (1085)
..|||||||||+||+||+ .+|++|+|||||+|||+.++..+.+.|+++.+.. +++|+.++|+.++
T Consensus 144 -----~~LSgG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~-~~tviiisH~~~~ 217 (272)
T PRK13547 144 -----TTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDW-NLGVLAIVHDPNL 217 (272)
T ss_pred -----ccCCHHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhc-CCEEEEEECCHHH
Confidence 569999999999999999 5999999999999999999999999999987533 4556667888889
Q ss_pred HHhhcCeEEEecCCeEEEecChhhHH
Q 001400 371 AYELFDDVILLSEGQIVYQGPRVSVL 396 (1085)
Q Consensus 371 ~~~~~D~ii~L~~G~iv~~G~~~~~~ 396 (1085)
+.+++|++++|++|++++.|+.+++.
T Consensus 218 ~~~~~d~i~~l~~G~i~~~g~~~~~~ 243 (272)
T PRK13547 218 AARHADRIAMLADGAIVAHGAPADVL 243 (272)
T ss_pred HHHhCCEEEEEECCeEEEecCHHHHc
Confidence 99999999999999999999987663
|
|
| >cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-34 Score=298.22 Aligned_cols=159 Identities=25% Similarity=0.457 Sum_probs=141.4
Q ss_pred EeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCCh----hcccceEEEEccCC---CCCCC
Q 001400 844 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ----ETFARISGYCEQND---IHSPG 916 (1085)
Q Consensus 844 ~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~----~~~~~~~gy~~Q~~---~~~~~ 916 (1085)
+|+++||++++|++++|+|+||||||||+++|+|..+ +.+|+|.++|.++.. ...++.++|++|++ .+++.
T Consensus 15 ~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~ 92 (182)
T cd03215 15 AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRP--PASGEITLDGKPVTRRSPRDAIRAGIAYVPEDRKREGLVLD 92 (182)
T ss_pred eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEECCccCHHHHHhCCeEEecCCcccCcccCC
Confidence 8999999999999999999999999999999999876 468999999987643 23456799999985 46788
Q ss_pred CCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Q 001400 917 LTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPT 996 (1085)
Q Consensus 917 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEPt 996 (1085)
.|++||+.+... ||+|||||++|||||+.+|++|||||||
T Consensus 93 ~t~~e~l~~~~~----------------------------------------LS~G~~qrl~la~al~~~p~llllDEP~ 132 (182)
T cd03215 93 LSVAENIALSSL----------------------------------------LSGGNQQKVVLARWLARDPRVLILDEPT 132 (182)
T ss_pred CcHHHHHHHHhh----------------------------------------cCHHHHHHHHHHHHHccCCCEEEECCCC
Confidence 999999875310 8999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEecC
Q 001400 997 SGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 1045 (1085)
Q Consensus 997 sgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~g 1045 (1085)
+|||+.++..+++.++++.++|+|||++||+++ ++.+.+|++++|++|
T Consensus 133 ~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~-~~~~~~d~v~~l~~G 180 (182)
T cd03215 133 RGVDVGAKAEIYRLIRELADAGKAVLLISSELD-ELLGLCDRILVMYEG 180 (182)
T ss_pred cCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEecCC
Confidence 999999999999999998777899999999986 577889999999864
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=309.94 Aligned_cols=211 Identities=22% Similarity=0.323 Sum_probs=165.8
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCC--CCceeeEEEECCccCCCC-----CCCceEEEEccCCCC
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGH--HLQVSGKITYNGHGFKEF-----VPPRTSAYVSQQDWQ 220 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~--~~~~~G~i~~~G~~~~~~-----~~~~~~~yv~Q~d~~ 220 (1085)
+++|+|+|+.|++||+++|+||||||||||+++|+|.+++ ..+.+|+|.++|.++... ..++.++|++|++.+
T Consensus 17 ~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~ 96 (251)
T PRK14251 17 YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVELRKEVGMVFQQPTP 96 (251)
T ss_pred eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHHHhhccEEEEecCCcc
Confidence 3599999999999999999999999999999999999862 113599999999876431 124579999999887
Q ss_pred CCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCccccccccc
Q 001400 221 VAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVG 300 (1085)
Q Consensus 221 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 300 (1085)
++ .||+||+.++....+.... + ..+..++++++.+||........
T Consensus 97 ~~-~tv~enl~~~~~~~~~~~~--------------------~-------------~~~~~~~~~l~~~~l~~~~~~~~- 141 (251)
T PRK14251 97 FP-FSVYDNVAYGLKIAGVKDK--------------------E-------------LIDQRVEESLKQAAIWKETKDNL- 141 (251)
T ss_pred CC-CcHHHHHHHHHHHcCCCCH--------------------H-------------HHHHHHHHHHHHcCCCcchHHHh-
Confidence 75 7999999875432211000 0 00123566778888842110001
Q ss_pred CcccccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEE
Q 001400 301 DEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVIL 380 (1085)
Q Consensus 301 ~~~~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~ 380 (1085)
+....+||||||||++|||||+.+|++++|||||+|||+.+...+.+.|+++.+ + ++|+.++|..+++.+++|+|++
T Consensus 142 ~~~~~~LS~Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~-~tiiiisH~~~~~~~~~d~i~~ 218 (251)
T PRK14251 142 DRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKH--Q-YTFIMVTHNLQQAGRISDQTAF 218 (251)
T ss_pred ccChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHc--C-CeEEEEECCHHHHHhhcCEEEE
Confidence 234467999999999999999999999999999999999999999999998853 3 5666688899999999999999
Q ss_pred ecCCeEEEecChhhHH
Q 001400 381 LSEGQIVYQGPRVSVL 396 (1085)
Q Consensus 381 L~~G~iv~~G~~~~~~ 396 (1085)
|++|+++..|+.+++.
T Consensus 219 l~~G~i~~~~~~~~~~ 234 (251)
T PRK14251 219 LMNGDLIEAGPTEEMF 234 (251)
T ss_pred EECCEEEEeCCHHHHH
Confidence 9999999999987763
|
|
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=314.05 Aligned_cols=211 Identities=23% Similarity=0.304 Sum_probs=168.9
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCC--CceeeEEEECCccCCCC----CCCceEEEEccCCCCC
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHH--LQVSGKITYNGHGFKEF----VPPRTSAYVSQQDWQV 221 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~--~~~~G~i~~~G~~~~~~----~~~~~~~yv~Q~d~~~ 221 (1085)
+++|+|+|+.|++|++++|+|||||||||||++|+|.++|. .+.+|+|.++|.++.+. ..++.++|++|++.++
T Consensus 34 ~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~l~ 113 (276)
T PRK14271 34 KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEFRRRVGMLFQRPNPF 113 (276)
T ss_pred EEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHHHhhheEEeccCCccC
Confidence 46999999999999999999999999999999999998751 12499999999887543 1246799999998877
Q ss_pred CCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccC
Q 001400 222 AEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGD 301 (1085)
Q Consensus 222 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 301 (1085)
+ +||+||+.++........ .. +....+..+++.+||....++.. +
T Consensus 114 ~-~tv~eni~~~~~~~~~~~-------------------~~--------------~~~~~~~~~l~~~~l~~~~~~~l-~ 158 (276)
T PRK14271 114 P-MSIMDNVLAGVRAHKLVP-------------------RK--------------EFRGVAQARLTEVGLWDAVKDRL-S 158 (276)
T ss_pred C-ccHHHHHHHHHHhccCCC-------------------HH--------------HHHHHHHHHHHHcCCCchhhhHh-h
Confidence 7 899999987543211000 00 00113566788888865432222 2
Q ss_pred cccccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEe
Q 001400 302 EMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILL 381 (1085)
Q Consensus 302 ~~~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L 381 (1085)
..+..|||||||||+|||+|+.+|++++|||||+|||+.++..+.+.|+++.+ + ++|+.++|+.+++.+++|++++|
T Consensus 159 ~~~~~LSgGq~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~--~-~tiiivsH~~~~~~~~~dri~~l 235 (276)
T PRK14271 159 DSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD--R-LTVIIVTHNLAQAARISDRAALF 235 (276)
T ss_pred CCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc--C-CEEEEEeCCHHHHHHhCCEEEEE
Confidence 34567999999999999999999999999999999999999999999998864 3 46666889999999999999999
Q ss_pred cCCeEEEecChhhHH
Q 001400 382 SEGQIVYQGPRVSVL 396 (1085)
Q Consensus 382 ~~G~iv~~G~~~~~~ 396 (1085)
++|++++.|+.+++.
T Consensus 236 ~~G~i~~~g~~~~~~ 250 (276)
T PRK14271 236 FDGRLVEEGPTEQLF 250 (276)
T ss_pred ECCEEEEeCCHHHHH
Confidence 999999999988774
|
|
| >PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-34 Score=311.55 Aligned_cols=198 Identities=24% Similarity=0.352 Sum_probs=161.9
Q ss_pred CCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCChhcccceEEEEccCCCCCCC--C
Q 001400 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPG--L 917 (1085)
Q Consensus 840 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gy~~Q~~~~~~~--~ 917 (1085)
++..+|+|+||+|++||+++|+|+||||||||+++|+|..+ +.+|+|.++|. +.++|++|++.+++. .
T Consensus 15 ~~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~--p~~G~i~~~~~--------~~i~~v~q~~~~~~~l~~ 84 (251)
T PRK09544 15 GQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVA--PDEGVIKRNGK--------LRIGYVPQKLYLDTTLPL 84 (251)
T ss_pred CCceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCc--------cCEEEeccccccccccCh
Confidence 34579999999999999999999999999999999999866 46899999872 358999999877665 4
Q ss_pred CHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCC
Q 001400 918 TVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTS 997 (1085)
Q Consensus 918 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEPts 997 (1085)
|+.+++.+.. ... .+.+.++++.+++.+..+... ..||+|||||++|||||+.+|++|||||||+
T Consensus 85 ~~~~~~~~~~------~~~----~~~~~~~l~~~gl~~~~~~~~-----~~LSgGq~qrv~laral~~~p~lllLDEPt~ 149 (251)
T PRK09544 85 TVNRFLRLRP------GTK----KEDILPALKRVQAGHLIDAPM-----QKLSGGETQRVLLARALLNRPQLLVLDEPTQ 149 (251)
T ss_pred hHHHHHhccc------ccc----HHHHHHHHHHcCChHHHhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 7788765321 111 234678899999887666543 5799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHC-CceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCCCc--hHHHHHHH
Q 001400 998 GLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGSK--SCELIKYF 1065 (1085)
Q Consensus 998 gLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~~~--~~~~~~~~ 1065 (1085)
|||+.++..+++.|+++.++ |.|||++||+++ ++.+.+|++++|+ + +++..|+..+. ...+.++|
T Consensus 150 ~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~-~i~~~~d~i~~l~-~-~i~~~g~~~~~~~~~~~~~~~ 217 (251)
T PRK09544 150 GVDVNGQVALYDLIDQLRRELDCAVLMVSHDLH-LVMAKTDEVLCLN-H-HICCSGTPEVVSLHPEFISMF 217 (251)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEC-C-ceEeeCCHHHHhCCHHHHHHh
Confidence 99999999999999998765 899999999986 4778899999995 4 58888875431 23455566
|
|
| >PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=327.31 Aligned_cols=209 Identities=19% Similarity=0.277 Sum_probs=167.5
Q ss_pred eEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCChhcccceEEEEccCCCCCCCCCHHH
Q 001400 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLE 921 (1085)
Q Consensus 842 ~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gy~~Q~~~~~~~~tv~e 921 (1085)
+.+|+||||+|++|+++||+|+||||||||+++|+|..+ +.+|+|.++|.+. ++.+.+.+.+.+|++|
T Consensus 37 ~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~--P~sGeI~I~G~~~----------~i~~~~~l~~~lTV~E 104 (549)
T PRK13545 37 HYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTM--PNKGTVDIKGSAA----------LIAISSGLNGQLTGIE 104 (549)
T ss_pred ceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCC--CCceEEEECCEee----------eEEeccccCCCCcHHH
Confidence 469999999999999999999999999999999999876 4689999999641 1222344567789999
Q ss_pred HHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCH
Q 001400 922 SLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDA 1001 (1085)
Q Consensus 922 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEPtsgLD~ 1001 (1085)
|+.+...... .......+.++++++.+++.+..+..+ ..||||||||++|||||+.+|++|||||||+|||+
T Consensus 105 nL~l~~~~~~---~~~~e~~e~i~elLe~lgL~~~ld~~~-----~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~ 176 (549)
T PRK13545 105 NIELKGLMMG---LTKEKIKEIIPEIIEFADIGKFIYQPV-----KTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQ 176 (549)
T ss_pred HHHhhhhhcC---CCHHHHHHHHHHHHHHcCChhHhhCCc-----ccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCH
Confidence 9987543221 122333455678899999877665543 57999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCCCchHHHHHHHHhccccc
Q 001400 1002 RAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGSKSCELIKYFEVESFMF 1072 (1085)
Q Consensus 1002 ~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~~~~~~~~~~~~~~~g~~ 1072 (1085)
.++..+++.|++++++|+|||++||+++ .+.+.||++++|.+ |++++.|+..+...+.-.|++..++.+
T Consensus 177 ~sr~~LlelL~el~~~G~TIIIVSHdl~-~i~~l~DrIivL~~-GkIv~~G~~~el~~~~~~~~~~~~~~~ 245 (549)
T PRK13545 177 TFTKKCLDKMNEFKEQGKTIFFISHSLS-QVKSFCTKALWLHY-GQVKEYGDIKEVVDHYDEFLKKYNQMS 245 (549)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEECCHHHHHhhHHHHHHHHhhcC
Confidence 9999999999998777999999999986 47788999999985 789988876543334445665554443
|
|
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=311.08 Aligned_cols=206 Identities=20% Similarity=0.243 Sum_probs=167.1
Q ss_pred eecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCC-ceeeEEEECCccCCCCCC-CceEEEEccCCC--CCCCC
Q 001400 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHL-QVSGKITYNGHGFKEFVP-PRTSAYVSQQDW--QVAEM 224 (1085)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~-~~~G~i~~~G~~~~~~~~-~~~~~yv~Q~d~--~~~~l 224 (1085)
++|+|+|++|++|++++|+||||||||||+++|+|.+++.. +.+|+|.++|.++..... ++.++||+|++. +.+.+
T Consensus 17 ~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~i~~v~q~~~~~~~~~~ 96 (254)
T PRK10418 17 PLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRKIATIMQNPRSAFNPLH 96 (254)
T ss_pred ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccccceEEEEecCCccccCccc
Confidence 58999999999999999999999999999999999987611 149999999988753322 357999999974 44668
Q ss_pred CHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcc---cccccccC
Q 001400 225 TVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDT---CADTLVGD 301 (1085)
Q Consensus 225 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~---~~dt~vg~ 301 (1085)
|+.+++.+.+...+.. .....++++++.+||.+ ..++
T Consensus 97 ~~~~~~~~~~~~~~~~------------------------------------~~~~~~~~~l~~~~l~~~~~~~~~---- 136 (254)
T PRK10418 97 TMHTHARETCLALGKP------------------------------------ADDATLTAALEAVGLENAARVLKL---- 136 (254)
T ss_pred cHHHHHHHHHHHcCCC------------------------------------hHHHHHHHHHHHcCCCChhhhhhc----
Confidence 9999986643221100 00123677888999975 2343
Q ss_pred cccccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEe
Q 001400 302 EMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILL 381 (1085)
Q Consensus 302 ~~~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L 381 (1085)
....|||||||||+|||||+.+|++|+|||||+|||..++..+.+.|+++++.. +++|+.++|+.+++.+++|++++|
T Consensus 137 -~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~-g~til~~sH~~~~~~~~~d~v~~l 214 (254)
T PRK10418 137 -YPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKR-ALGMLLVTHDMGVVARLADDVAVM 214 (254)
T ss_pred -CCcccCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhc-CcEEEEEecCHHHHHHhCCEEEEE
Confidence 345799999999999999999999999999999999999999999999987543 456666888889999999999999
Q ss_pred cCCeEEEecChhhHH
Q 001400 382 SEGQIVYQGPRVSVL 396 (1085)
Q Consensus 382 ~~G~iv~~G~~~~~~ 396 (1085)
++|++++.|+.+++.
T Consensus 215 ~~G~i~~~~~~~~~~ 229 (254)
T PRK10418 215 SHGRIVEQGDVETLF 229 (254)
T ss_pred ECCEEEEecCHHHHh
Confidence 999999999987764
|
|
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-34 Score=314.04 Aligned_cols=198 Identities=25% Similarity=0.279 Sum_probs=160.9
Q ss_pred eecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCC---CCceEEEEccCCCCCCCCC
Q 001400 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV---PPRTSAYVSQQDWQVAEMT 225 (1085)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~---~~~~~~yv~Q~d~~~~~lT 225 (1085)
.+|+|+|+.|++||+++|+|||||||||||++|+|.++ . +|+|.++|.++.... .++.++||+|++.+|+ .|
T Consensus 18 ~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~---~G~I~i~g~~i~~~~~~~lr~~i~~v~q~~~lf~-~t 92 (275)
T cd03289 18 AVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-T---EGDIQIDGVSWNSVPLQKWRKAFGVIPQKVFIFS-GT 92 (275)
T ss_pred cceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-C---CcEEEECCEEhhhCCHHHHhhhEEEECCCcccch-hh
Confidence 58999999999999999999999999999999999985 3 899999999875542 2467999999999887 59
Q ss_pred HHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCc-------cccccc
Q 001400 226 VRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLD-------TCADTL 298 (1085)
Q Consensus 226 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-------~~~dt~ 298 (1085)
|+||+.+... ...+ .+.+.++.+||. ...||.
T Consensus 93 v~~nl~~~~~-----~~~~------------------------------------~~~~~l~~~gL~~~~~~~p~~l~~~ 131 (275)
T cd03289 93 FRKNLDPYGK-----WSDE------------------------------------EIWKVAEEVGLKSVIEQFPGQLDFV 131 (275)
T ss_pred HHHHhhhccC-----CCHH------------------------------------HHHHHHHHcCCHHHHHhCcccccce
Confidence 9999963211 0000 122233344443 345666
Q ss_pred ccCcccccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeE
Q 001400 299 VGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDV 378 (1085)
Q Consensus 299 vg~~~~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i 378 (1085)
+++ ....||||||||++|||||+.+|+|++|||||++||+.+...+.+.|++..+ +++|++++|..+.+.. +|+|
T Consensus 132 ~~~-~g~~LS~G~~qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~~---~~tii~isH~~~~i~~-~dri 206 (275)
T cd03289 132 LVD-GGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAFA---DCTVILSEHRIEAMLE-CQRF 206 (275)
T ss_pred ecC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhcC---CCEEEEEECCHHHHHh-CCEE
Confidence 765 4568999999999999999999999999999999999999999999997632 4556667788877754 9999
Q ss_pred EEecCCeEEEecChhhHHH
Q 001400 379 ILLSEGQIVYQGPRVSVLD 397 (1085)
Q Consensus 379 i~L~~G~iv~~G~~~~~~~ 397 (1085)
++|++|++++.|++++++.
T Consensus 207 ~vl~~G~i~~~g~~~~l~~ 225 (275)
T cd03289 207 LVIEENKVRQYDSIQKLLN 225 (275)
T ss_pred EEecCCeEeecCCHHHHhh
Confidence 9999999999999999864
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >PRK14252 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=312.20 Aligned_cols=208 Identities=25% Similarity=0.269 Sum_probs=164.2
Q ss_pred CCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCC---eeeeEEEEcCccCC-------hhcccceEEEEcc
Q 001400 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGG---IIEGDIYISGYPKR-------QETFARISGYCEQ 909 (1085)
Q Consensus 840 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~---~~~G~i~i~g~~~~-------~~~~~~~~gy~~Q 909 (1085)
+++.+|+|+||+|++||+++|+|+||||||||+++|+|...+. +.+|+|.++|.+.. ...+++.+||++|
T Consensus 27 ~~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q 106 (265)
T PRK14252 27 GGYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVDPIEVRMRISMVFQ 106 (265)
T ss_pred CCeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccccCHHHHhccEEEEcc
Confidence 3457999999999999999999999999999999999975421 26899999987642 1234667999999
Q ss_pred CCCCCCCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCc-ccccccCCCCCCCCCHHHHHHHHHHHHHhcCCC
Q 001400 910 NDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTS-LSGALIGLPGINGLSTEQRKRLTIAVELVANPS 988 (1085)
Q Consensus 910 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~ 988 (1085)
++.+++. |++||+.+....... . .....++.++++++.+++.+ +.+.... .+..||+|||||++|||||+.+|+
T Consensus 107 ~~~~~~~-tv~eni~~~~~~~~~-~-~~~~~~~~~~~~l~~~~l~~~l~~~~~~--~~~~LS~G~~qrv~laral~~~p~ 181 (265)
T PRK14252 107 KPNPFPK-SIFENVAYGLRIRGV-K-RRSILEERVENALRNAALWDEVKDRLGD--LAFNLSGGQQQRLCIARALATDPE 181 (265)
T ss_pred CCcCCcc-hHHHHHHhHHHHcCC-C-hHHHHHHHHHHHHHHcCCchhhhHHHhC--CcccCCHHHHHHHHHHHHHHcCCC
Confidence 9988876 999999876432211 0 11122345677788777642 1111111 135799999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCC
Q 001400 989 IVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1085)
Q Consensus 989 illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~ 1055 (1085)
+|+|||||+|||+.++..+.+.|+++.+ +.|||++||+++ ++.+.+|++++|++ |+++..|+..
T Consensus 182 llllDEPt~gLD~~~~~~l~~~l~~l~~-~~tiiivth~~~-~~~~~~d~i~~l~~-G~i~~~g~~~ 245 (265)
T PRK14252 182 ILLFDEPTSALDPIATASIEELISDLKN-KVTILIVTHNMQ-QAARVSDYTAYMYM-GELIEFGATD 245 (265)
T ss_pred EEEEeCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEeCCHH
Confidence 9999999999999999999999999865 799999999986 47788999999974 7888888753
|
|
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=312.12 Aligned_cols=206 Identities=25% Similarity=0.349 Sum_probs=167.6
Q ss_pred eecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCcc-----CCCCCC-------CceEEEEcc
Q 001400 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHG-----FKEFVP-------PRTSAYVSQ 216 (1085)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~-----~~~~~~-------~~~~~yv~Q 216 (1085)
.+|+|+|++|++|++++|+||||||||||+++|+|.++|. +|+|.++|.+ +..... ++.++|++|
T Consensus 20 ~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~i~~~~~~~~~~~~~~~i~~v~q 96 (258)
T PRK11701 20 KGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPD---AGEVHYRMRDGQLRDLYALSEAERRRLLRTEWGFVHQ 96 (258)
T ss_pred eeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCccccccccccCCHHHHHHHhhcceEEEee
Confidence 5999999999999999999999999999999999998876 9999999987 544321 346999999
Q ss_pred CCC--CCCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcc-
Q 001400 217 QDW--QVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDT- 293 (1085)
Q Consensus 217 ~d~--~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~- 293 (1085)
++. +++.+|+.||+.+.....+.. .+ + .....++++++.+|+..
T Consensus 97 ~~~~~~~~~~~~~~~i~~~~~~~~~~-~~------------------~--------------~~~~~~~~~l~~~~l~~~ 143 (258)
T PRK11701 97 HPRDGLRMQVSAGGNIGERLMAVGAR-HY------------------G--------------DIRATAGDWLERVEIDAA 143 (258)
T ss_pred CcccccCccccHHHHHHHHHHHhccC-cH------------------H--------------HHHHHHHHHHHHcCCChh
Confidence 973 577789999997642211000 00 0 00123677889999964
Q ss_pred cccccccCcccccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHh
Q 001400 294 CADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYE 373 (1085)
Q Consensus 294 ~~dt~vg~~~~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~ 373 (1085)
..++.+ ..|||||||||+|||||+.+|++|+|||||+|||+.+...+.+.|+++.+.. +.+|+.++|+..++.+
T Consensus 144 ~~~~~~-----~~LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~-~~tii~isH~~~~~~~ 217 (258)
T PRK11701 144 RIDDLP-----TTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVREL-GLAVVIVTHDLAVARL 217 (258)
T ss_pred HHhCCC-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhc-CcEEEEEeCCHHHHHH
Confidence 445443 5699999999999999999999999999999999999999999999886533 4566778899999999
Q ss_pred hcCeEEEecCCeEEEecChhhHH
Q 001400 374 LFDDVILLSEGQIVYQGPRVSVL 396 (1085)
Q Consensus 374 ~~D~ii~L~~G~iv~~G~~~~~~ 396 (1085)
++|+|++|++|++++.|+++++.
T Consensus 218 ~~d~i~~l~~g~i~~~~~~~~~~ 240 (258)
T PRK11701 218 LAHRLLVMKQGRVVESGLTDQVL 240 (258)
T ss_pred hcCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999987763
|
|
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-34 Score=312.78 Aligned_cols=196 Identities=28% Similarity=0.397 Sum_probs=153.7
Q ss_pred eEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCCh---hcccceEEEEccCCCCCCCCC
Q 001400 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFARISGYCEQNDIHSPGLT 918 (1085)
Q Consensus 842 ~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gy~~Q~~~~~~~~t 918 (1085)
..+|+|+||++++||+++|+|+||||||||+++|+|... +.+|+|.++|.++.. ...++.++|++|++.+++ .|
T Consensus 16 ~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~t 92 (238)
T cd03249 16 VPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYD--PTSGEILLDGVDIRDLNLRWLRSQIGLVSQEPVLFD-GT 92 (238)
T ss_pred ccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCC--CCCCEEEECCEehhhcCHHHHHhhEEEECCchhhhh-hh
Confidence 469999999999999999999999999999999999865 468999999987532 234567999999987775 69
Q ss_pred HHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCccccc-------ccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEE
Q 001400 919 VLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGA-------LIGLPGINGLSTEQRKRLTIAVELVANPSIVF 991 (1085)
Q Consensus 919 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~ill 991 (1085)
++||+.+....+ ... ..++.++..++.+..+. ... ..+..||+|||||++|||||+.+|++|+
T Consensus 93 v~e~l~~~~~~~-----~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~LS~G~~qrv~la~al~~~p~lll 162 (238)
T cd03249 93 IAENIRYGKPDA-----TDE----EVEEAAKKANIHDFIMSLPDGYDTLVG-ERGSQLSGGQKQRIAIARALLRNPKILL 162 (238)
T ss_pred HHHHhhccCCCC-----CHH----HHHHHHHHcChHHHHHhhccccceeec-cCCccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 999998753211 111 11222333332221111 111 1235799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCC
Q 001400 992 MDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1085)
Q Consensus 992 lDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~ 1054 (1085)
|||||+|||+.++..+++.|+++. +|+|||++||+++ ++ +.||++++|++ |++++.|+.
T Consensus 163 lDEP~~gLD~~~~~~l~~~l~~~~-~g~~vi~~sh~~~-~~-~~~d~v~~l~~-G~i~~~~~~ 221 (238)
T cd03249 163 LDEATSALDAESEKLVQEALDRAM-KGRTTIVIAHRLS-TI-RNADLIAVLQN-GQVVEQGTH 221 (238)
T ss_pred EeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHH-HH-hhCCEEEEEEC-CEEEEeCCH
Confidence 999999999999999999999986 7999999999986 34 47999999986 688888774
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >PRK13540 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-34 Score=302.26 Aligned_cols=185 Identities=22% Similarity=0.281 Sum_probs=155.2
Q ss_pred cCCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCCh--hcccceEEEEccCCCCCCC
Q 001400 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ--ETFARISGYCEQNDIHSPG 916 (1085)
Q Consensus 839 ~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~--~~~~~~~gy~~Q~~~~~~~ 916 (1085)
+++..+|+|+||+|++||++||+|+||||||||+++|+|..+ +.+|+|+++|.++.. ..+++.++|++|++.+++.
T Consensus 11 ~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~v~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~ 88 (200)
T PRK13540 11 YHDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLN--PEKGEILFERQSIKKDLCTYQKQLCFVGHRSGINPY 88 (200)
T ss_pred eCCeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeeEEECCCccccCHHHHHhheEEeccccccCcC
Confidence 345679999999999999999999999999999999999876 568999999987642 3456789999999888889
Q ss_pred CCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Q 001400 917 LTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPT 996 (1085)
Q Consensus 917 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEPt 996 (1085)
.||+||+.+.... .. . ...++++++.+++.+..+... ..||+|||||++|||||+.+|++|+|||||
T Consensus 89 ~tv~~~~~~~~~~--~~----~--~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~~rv~laral~~~p~~lilDEP~ 155 (200)
T PRK13540 89 LTLRENCLYDIHF--SP----G--AVGITELCRLFSLEHLIDYPC-----GLLSSGQKRQVALLRLWMSKAKLWLLDEPL 155 (200)
T ss_pred CCHHHHHHHHHhc--Cc----c--hHHHHHHHHHcCCchhhhCCh-----hhcCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 9999999876321 11 1 135678899988876555432 479999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEE
Q 001400 997 SGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELL 1040 (1085)
Q Consensus 997 sgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il 1040 (1085)
+|||+.++..+.+.|+++.++|.|||++||+++ ....+|...
T Consensus 156 ~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~--~~~~~d~~~ 197 (200)
T PRK13540 156 VALDELSLLTIITKIQEHRAKGGAVLLTSHQDL--PLNKADYEE 197 (200)
T ss_pred cccCHHHHHHHHHHHHHHHHcCCEEEEEeCCch--hccccchhh
Confidence 999999999999999998777999999999975 445567544
|
|
| >cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=297.02 Aligned_cols=170 Identities=38% Similarity=0.634 Sum_probs=147.3
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhh--CCCCceeeEEEECCccCCCCCCCceEEEEccCCCCCCCCC
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRL--GHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMT 225 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l--~~~~~~~G~i~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lT 225 (1085)
+++|+|+|+++++|++++|+||||||||||+++|+|.+ ++. +|+|.++|+++.....++.++|++|++.+++.+|
T Consensus 22 ~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~---~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~t 98 (194)
T cd03213 22 KQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGV---SGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLT 98 (194)
T ss_pred ccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCC---ceEEEECCEeCchHhhhheEEEccCcccCCCCCc
Confidence 46999999999999999999999999999999999998 665 9999999998764334567999999998889999
Q ss_pred HHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCcccc
Q 001400 226 VRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLK 305 (1085)
Q Consensus 226 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 305 (1085)
++||+.+..++ .
T Consensus 99 ~~~~i~~~~~~--------------------------------------------------------------------~ 110 (194)
T cd03213 99 VRETLMFAAKL--------------------------------------------------------------------R 110 (194)
T ss_pred HHHHHHHHHHh--------------------------------------------------------------------c
Confidence 99999763110 0
Q ss_pred cCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChh-HHHhhcCeEEEecCC
Q 001400 306 GISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAP-EAYELFDDVILLSEG 384 (1085)
Q Consensus 306 ~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~-~~~~~~D~ii~L~~G 384 (1085)
.||||||||++|||||+.+|++++|||||+|||..++..+.+.|+++.+. +.|+|+ ++|+.+ ++.+++|++++|++|
T Consensus 111 ~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~-~~tiii-~sh~~~~~~~~~~d~v~~l~~G 188 (194)
T cd03213 111 GLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADT-GRTIIC-SIHQPSSEIFELFDKLLLLSQG 188 (194)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhC-CCEEEE-EecCchHHHHHhcCEEEEEeCC
Confidence 49999999999999999999999999999999999999999999998653 445444 556654 788999999999999
Q ss_pred eEEEec
Q 001400 385 QIVYQG 390 (1085)
Q Consensus 385 ~iv~~G 390 (1085)
++++.|
T Consensus 189 ~i~~~~ 194 (194)
T cd03213 189 RVIYFG 194 (194)
T ss_pred EEEecC
Confidence 998765
|
DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. |
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-34 Score=311.48 Aligned_cols=197 Identities=26% Similarity=0.380 Sum_probs=154.9
Q ss_pred eEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCCh---hcccceEEEEccCCCCCCCCC
Q 001400 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFARISGYCEQNDIHSPGLT 918 (1085)
Q Consensus 842 ~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gy~~Q~~~~~~~~t 918 (1085)
..+++|+||++++|++++|+||||||||||+++|+|..+ +.+|+|.++|.++.. ..+++.++|++|++.+++. |
T Consensus 16 ~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~-t 92 (229)
T cd03254 16 KPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYD--PQKGQILIDGIDIRDISRKSLRSMIGVVLQDTFLFSG-T 92 (229)
T ss_pred CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCCEEEECCEeHHHcCHHHHhhhEEEecCCchhhhh-H
Confidence 458999999999999999999999999999999999876 468999999987532 3456679999999887765 9
Q ss_pred HHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccc------CCCCCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q 001400 919 VLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALI------GLPGINGLSTEQRKRLTIAVELVANPSIVFM 992 (1085)
Q Consensus 919 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~~~~~~LS~Gqrqrl~iA~aL~~~p~illl 992 (1085)
++||+.+.... .. ...++++++.+++.+..+... ....+..||+|||||++|||||+.+|++|||
T Consensus 93 v~~~~~~~~~~-----~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~llll 163 (229)
T cd03254 93 IMENIRLGRPN-----AT----DEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILIL 163 (229)
T ss_pred HHHHHhccCCC-----CC----HHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99999764211 01 112333444444433222110 0012457999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCC
Q 001400 993 DEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1085)
Q Consensus 993 DEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~ 1054 (1085)
||||+|||+.++..+++.|+++. +|+|||++||+++. + +.+|++++|++ |++++.|+.
T Consensus 164 DEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~~-~-~~~d~i~~l~~-g~~~~~~~~ 221 (229)
T cd03254 164 DEATSNIDTETEKLIQEALEKLM-KGRTSIIIAHRLST-I-KNADKILVLDD-GKIIEEGTH 221 (229)
T ss_pred eCccccCCHHHHHHHHHHHHHhc-CCCEEEEEecCHHH-H-hhCCEEEEEeC-CeEEEeCCH
Confidence 99999999999999999999985 58999999999863 4 56999999985 688887763
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-34 Score=304.49 Aligned_cols=192 Identities=27% Similarity=0.411 Sum_probs=160.8
Q ss_pred cceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCC-------CCCceEEEEccCCCCCCCCC
Q 001400 153 DLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEF-------VPPRTSAYVSQQDWQVAEMT 225 (1085)
Q Consensus 153 ~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~-------~~~~~~~yv~Q~d~~~~~lT 225 (1085)
|+|++|++ ++++|+|||||||||||++|+|.++|. +|+|.++|.++... ..++.++|++|++.+++.+|
T Consensus 16 ~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 91 (214)
T cd03297 16 KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPD---GGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHLN 91 (214)
T ss_pred CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEecccccchhhhhhHhhcEEEEecCCccCCCCC
Confidence 99999999 999999999999999999999998876 99999999876421 12457999999998888999
Q ss_pred HHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCcccc
Q 001400 226 VRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLK 305 (1085)
Q Consensus 226 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 305 (1085)
|+||+.+..... . . . .....++++++.+||++..++.+ .
T Consensus 92 ~~~~l~~~~~~~---~--~------~-------------------------~~~~~~~~~l~~~~l~~~~~~~~-----~ 130 (214)
T cd03297 92 VRENLAFGLKRK---R--N------R-------------------------EDRISVDELLDLLGLDHLLNRYP-----A 130 (214)
T ss_pred HHHHHHHHHhhC---C--H------H-------------------------HHHHHHHHHHHHcCCHhHhhcCc-----c
Confidence 999998753210 0 0 0 00123677889999987666544 5
Q ss_pred cCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEecCCe
Q 001400 306 GISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQ 385 (1085)
Q Consensus 306 ~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~~G~ 385 (1085)
.||||||||++||+|++.+|++++|||||+|||+.++..+.+.|+++++.. +++|+.++|+.+++.+++|++++|++|+
T Consensus 131 ~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~~G~ 209 (214)
T cd03297 131 QLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNL-NIPVIFVTHDLSEAEYLADRIVVMEDGR 209 (214)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHc-CcEEEEEecCHHHHHHhcCEEEEEECCE
Confidence 699999999999999999999999999999999999999999999987643 4556668899999999999999999999
Q ss_pred EEEec
Q 001400 386 IVYQG 390 (1085)
Q Consensus 386 iv~~G 390 (1085)
++..|
T Consensus 210 i~~~g 214 (214)
T cd03297 210 LQYIG 214 (214)
T ss_pred EEecC
Confidence 98765
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-34 Score=311.07 Aligned_cols=211 Identities=24% Similarity=0.353 Sum_probs=167.3
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCC--CceeeEEEECCccCCCC-----CCCceEEEEccCCCC
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHH--LQVSGKITYNGHGFKEF-----VPPRTSAYVSQQDWQ 220 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~--~~~~G~i~~~G~~~~~~-----~~~~~~~yv~Q~d~~ 220 (1085)
.++|+|+|+++++|++++|+|||||||||||++|+|.+++. .+.+|+|.++|.++... ..++.++|++|++.+
T Consensus 16 ~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~ 95 (250)
T PRK14262 16 KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPTP 95 (250)
T ss_pred ceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHHhhhhEEEEecCCcc
Confidence 35999999999999999999999999999999999998641 12589999999876532 124679999999987
Q ss_pred CCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCccccccccc
Q 001400 221 VAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVG 300 (1085)
Q Consensus 221 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 300 (1085)
++ +||+||+.+.....+.... + ..+..+++.++.+|+....+.. .
T Consensus 96 ~~-~tv~e~l~~~~~~~~~~~~-~--------------------------------~~~~~~~~~l~~~~l~~~~~~~-~ 140 (250)
T PRK14262 96 FP-MSIYDNVAFGPRIHGVKSK-H--------------------------------KLDRIVEESLKKAALWDEVKSE-L 140 (250)
T ss_pred Cc-ccHHHHHHHHHHHcCCCcH-H--------------------------------HHHHHHHHHHHHcCCCchhHHH-H
Confidence 77 8999999886432211000 0 0012256677778875321111 1
Q ss_pred CcccccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEE
Q 001400 301 DEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVIL 380 (1085)
Q Consensus 301 ~~~~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~ 380 (1085)
+..+.+||||||||++||+||+.+|++++|||||+|||..++..+.+.|+++.+ + ++++.++|+.+++.+++|++++
T Consensus 141 ~~~~~~LS~Gq~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~-~tili~sH~~~~~~~~~d~i~~ 217 (250)
T PRK14262 141 NKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSE--N-YTIVIVTHNIGQAIRIADYIAF 217 (250)
T ss_pred hCChhhcCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhc--C-cEEEEEeCCHHHHHHhCCEEEE
Confidence 334567999999999999999999999999999999999999999999999853 3 4566678888889999999999
Q ss_pred ecCCeEEEecChhhHH
Q 001400 381 LSEGQIVYQGPRVSVL 396 (1085)
Q Consensus 381 L~~G~iv~~G~~~~~~ 396 (1085)
|++|+++..|+.+++.
T Consensus 218 l~~G~i~~~g~~~~~~ 233 (250)
T PRK14262 218 MYRGELIEYGPTREIV 233 (250)
T ss_pred EECCEEEEecCHHHHH
Confidence 9999999999987764
|
|
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-33 Score=311.28 Aligned_cols=210 Identities=22% Similarity=0.293 Sum_probs=166.6
Q ss_pred eecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCC--CceeeEEEECCccCCCC-----CCCceEEEEccCCCCC
Q 001400 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHH--LQVSGKITYNGHGFKEF-----VPPRTSAYVSQQDWQV 221 (1085)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~--~~~~G~i~~~G~~~~~~-----~~~~~~~yv~Q~d~~~ 221 (1085)
.+|+|+|+.|++|++++|+||||||||||+++|+|.+++. .+.+|+|.++|.++... ..++.++|++|++.++
T Consensus 39 ~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~~~~~~~i~~v~q~~~l~ 118 (272)
T PRK14236 39 QALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVAELRRRVGMVFQRPNPF 118 (272)
T ss_pred eEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCHHHHhccEEEEecCCccC
Confidence 5999999999999999999999999999999999997631 13599999999987531 1246799999998888
Q ss_pred CCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccC
Q 001400 222 AEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGD 301 (1085)
Q Consensus 222 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 301 (1085)
+. ||+||+.+.....+... + + ..+..++++++.+|+.....+.. +
T Consensus 119 ~~-tv~enl~~~~~~~~~~~--~---~----------------------------~~~~~~~~~l~~~~l~~~~~~~~-~ 163 (272)
T PRK14236 119 PK-SIYENVVYGLRLQGINN--R---R----------------------------VLDEAVERSLRGAALWDEVKDRL-H 163 (272)
T ss_pred cc-cHHHHHHHHHHhcCCCc--H---H----------------------------HHHHHHHHHHHHcCCChhHHHHh-h
Confidence 75 99999987643321100 0 0 00123566777788753211111 2
Q ss_pred cccccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEe
Q 001400 302 EMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILL 381 (1085)
Q Consensus 302 ~~~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L 381 (1085)
.....|||||||||+|||||+.+|++++|||||+|||+.++..+.+.|+++++ + .+++.++|+.+++.+++|++++|
T Consensus 164 ~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~--~-~tiiivtH~~~~~~~~~d~i~~l 240 (272)
T PRK14236 164 ENAFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKS--K-YTIVIVTHNMQQAARVSDYTAFM 240 (272)
T ss_pred CCcccCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--C-CeEEEEeCCHHHHHhhCCEEEEE
Confidence 34567999999999999999999999999999999999999999999999864 3 45666788889999999999999
Q ss_pred cCCeEEEecChhhHH
Q 001400 382 SEGQIVYQGPRVSVL 396 (1085)
Q Consensus 382 ~~G~iv~~G~~~~~~ 396 (1085)
++|++++.|+.+++.
T Consensus 241 ~~G~i~~~g~~~~~~ 255 (272)
T PRK14236 241 YMGKLVEYGDTDTLF 255 (272)
T ss_pred ECCEEEecCCHHHHh
Confidence 999999999887653
|
|
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-33 Score=307.77 Aligned_cols=211 Identities=20% Similarity=0.272 Sum_probs=163.3
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhC--CCCceeeEEEECCccCCCC-----CCCceEEEEccCCCC
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLG--HHLQVSGKITYNGHGFKEF-----VPPRTSAYVSQQDWQ 220 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~--~~~~~~G~i~~~G~~~~~~-----~~~~~~~yv~Q~d~~ 220 (1085)
+.+|+|+|++|++|++++|+|||||||||||++|+|..+ +....+|+|.++|.++... ..++.++|++|++.+
T Consensus 18 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~ 97 (252)
T PRK14255 18 FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQLRKQVGMVFQQPNP 97 (252)
T ss_pred eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHHHhcCeEEEEECCCcc
Confidence 359999999999999999999999999999999999864 3212489999999877421 124579999999887
Q ss_pred CCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCccccccccc
Q 001400 221 VAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVG 300 (1085)
Q Consensus 221 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 300 (1085)
++ .||+||+.+.....+.... +. ....+.+.++.+++........
T Consensus 98 ~~-~tv~~nl~~~~~~~~~~~~-~~--------------------------------~~~~~~~~l~~~~l~~~i~~~~- 142 (252)
T PRK14255 98 FP-FSIYENVIYGLRLAGVKDK-AV--------------------------------LDEAVETSLKQAAIWDEVKDHL- 142 (252)
T ss_pred CC-CcHHHHHHHHHHHcCCCCH-HH--------------------------------HHHHHHHHHHHcCCccchhhHH-
Confidence 87 6999999886433221000 00 0112344556666532111111
Q ss_pred CcccccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEE
Q 001400 301 DEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVIL 380 (1085)
Q Consensus 301 ~~~~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~ 380 (1085)
+..+..|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ + ++++.++|+..++.+++|+|++
T Consensus 143 ~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~-~tii~vsH~~~~~~~~~d~i~~ 219 (252)
T PRK14255 143 HESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRD--Q-YTIILVTHSMHQASRISDKTAF 219 (252)
T ss_pred hcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHh--C-CEEEEEECCHHHHHHhCCEEEE
Confidence 233457999999999999999999999999999999999999999999999864 3 4566688888999999999999
Q ss_pred ecCCeEEEecChhhHH
Q 001400 381 LSEGQIVYQGPRVSVL 396 (1085)
Q Consensus 381 L~~G~iv~~G~~~~~~ 396 (1085)
|++|+++..|+..++.
T Consensus 220 l~~G~i~~~~~~~~~~ 235 (252)
T PRK14255 220 FLTGNLIEFADTKQMF 235 (252)
T ss_pred EECCEEEEeCCHHHHh
Confidence 9999999999887653
|
|
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=316.77 Aligned_cols=215 Identities=24% Similarity=0.331 Sum_probs=185.8
Q ss_pred ccccccccccCCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCCh----hcccceEE
Q 001400 830 VELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ----ETFARISG 905 (1085)
Q Consensus 830 ~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~----~~~~~~~g 905 (1085)
+++++..+.++...+++||||+|++||+.||+|.|||||||||++|.|... |.+|+|.++|++.+- ...+..||
T Consensus 5 l~~~~itK~f~~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~--P~~GeI~v~G~~v~~~sP~dA~~~GIG 82 (501)
T COG3845 5 LEMRGITKRFPGVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQ--PDSGEIRVDGKEVRIKSPRDAIRLGIG 82 (501)
T ss_pred EEEeccEEEcCCEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCccc--CCcceEEECCEEeccCCHHHHHHcCCc
Confidence 345566667788899999999999999999999999999999999999877 579999999997542 34566799
Q ss_pred EEccCCCCCCCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhc
Q 001400 906 YCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVA 985 (1085)
Q Consensus 906 y~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~ 985 (1085)
+|.|+..+.|++||.||+..+..-......+.....+.++++.+..++.--.+..+ ..||.||||||.|-++|.+
T Consensus 83 MVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V-----~dLsVG~qQRVEIlKaLyr 157 (501)
T COG3845 83 MVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKV-----ADLSVGEQQRVEILKALYR 157 (501)
T ss_pred EEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCcccee-----ecCCcchhHHHHHHHHHhc
Confidence 99999999999999999998753222223355666778999999999987667665 4799999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEecCcEEEEecC
Q 001400 986 NPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGP 1053 (1085)
Q Consensus 986 ~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~ 1053 (1085)
+|++|||||||+-|-|.....+++++++++++|+|||+|||.+. ++.+.|||+-||.+ |+++-.-+
T Consensus 158 ~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~-Ev~~iaDrvTVLR~-Gkvvgt~~ 223 (501)
T COG3845 158 GARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLK-EVMAIADRVTVLRR-GKVVGTVD 223 (501)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHH-HHHHhhCeeEEEeC-CeEEeeec
Confidence 99999999999999999999999999999999999999999997 79999999999985 67765544
|
|
| >PRK13546 teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-33 Score=307.29 Aligned_cols=205 Identities=20% Similarity=0.284 Sum_probs=167.2
Q ss_pred CCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCChhcccceEEEEccCCCCCCCCCH
Q 001400 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTV 919 (1085)
Q Consensus 840 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gy~~Q~~~~~~~~tv 919 (1085)
....+|+|+||+|++||++||+|+||||||||+++|+|..+ +.+|+|.++|. +++++|...+.+.+|+
T Consensus 35 ~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~--p~~G~I~~~g~----------~~~~~~~~~~~~~~tv 102 (264)
T PRK13546 35 KTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLS--PTVGKVDRNGE----------VSVIAISAGLSGQLTG 102 (264)
T ss_pred CceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCE----------EeEEecccCCCCCCcH
Confidence 45679999999999999999999999999999999999876 46899999985 3567777777778999
Q ss_pred HHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCC
Q 001400 920 LESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGL 999 (1085)
Q Consensus 920 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEPtsgL 999 (1085)
.||+.+...... .........++++++.+++.+..+.. +..||+|||||++||+||+.+|+||||||||+||
T Consensus 103 ~enl~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gL 174 (264)
T PRK13546 103 IENIEFKMLCMG---FKRKEIKAMTPKIIEFSELGEFIYQP-----VKKYSSGMRAKLGFSINITVNPDILVIDEALSVG 174 (264)
T ss_pred HHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchhhcCC-----cccCCHHHHHHHHHHHHHhhCCCEEEEeCccccC
Confidence 999987543221 12233344567788888887665543 3579999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCCCchHHHHHHHH
Q 001400 1000 DARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGSKSCELIKYFE 1066 (1085)
Q Consensus 1000 D~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~~~~~~~~~~~~ 1066 (1085)
|+.++..+++.|+++.+.|+|||++||+++ .+.+.+|++++|+ +|+++..|+..+......+||.
T Consensus 175 D~~~~~~l~~~L~~~~~~g~tiIiisH~~~-~i~~~~d~i~~l~-~G~i~~~g~~~~~~~~~~~~~~ 239 (264)
T PRK13546 175 DQTFAQKCLDKIYEFKEQNKTIFFVSHNLG-QVRQFCTKIAWIE-GGKLKDYGELDDVLPKYEAFLN 239 (264)
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHHcCEEEEEE-CCEEEEeCCHHHHHHHhHHHHH
Confidence 999999999999998777999999999976 4677899999998 4788888876543334444443
|
|
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-33 Score=312.07 Aligned_cols=208 Identities=22% Similarity=0.282 Sum_probs=163.0
Q ss_pred eecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCC--ceeeEEEECCccCCCC-----CCCceEEEEccCCCCC
Q 001400 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHL--QVSGKITYNGHGFKEF-----VPPRTSAYVSQQDWQV 221 (1085)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~--~~~G~i~~~G~~~~~~-----~~~~~~~yv~Q~d~~~ 221 (1085)
.+|+|+|+.|++||+++|+|||||||||||++|+|.+++.. +.+|+|.++|+++... ..++.++|++|++.++
T Consensus 34 ~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~~~~~~~i~~v~q~~~l~ 113 (274)
T PRK14265 34 LALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKLRRQVGMVFQRPNPF 113 (274)
T ss_pred EEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchhHHHhhcEEEEccCCccc
Confidence 59999999999999999999999999999999999875321 2489999999876431 1246799999998877
Q ss_pred CCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccC
Q 001400 222 AEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGD 301 (1085)
Q Consensus 222 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 301 (1085)
+. ||.||+.++....+... + .+..++..++.+++........ +
T Consensus 114 ~~-tv~~nl~~~~~~~~~~~------~-----------------------------~~~~~~~~l~~~~l~~~l~~~~-~ 156 (274)
T PRK14265 114 PK-SIYENIAFAPRANGYKG------N-----------------------------LDELVEDSLRRAAIWEEVKDKL-K 156 (274)
T ss_pred cc-cHHHHHHhHHHhcCchH------H-----------------------------HHHHHHHHHHHcccchhhHHHh-c
Confidence 64 99999987543211000 0 0011344556666532111111 2
Q ss_pred cccccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEe
Q 001400 302 EMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILL 381 (1085)
Q Consensus 302 ~~~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L 381 (1085)
..+..|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.+ + ++|+.++|+.+++.+++|++++|
T Consensus 157 ~~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~--~-~tiii~sH~~~~~~~~~d~i~~l 233 (274)
T PRK14265 157 EKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKE--Q-YTIIMVTHNMQQASRVADWTAFF 233 (274)
T ss_pred CCcccCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc--C-CEEEEEeCCHHHHHHhCCEEEEE
Confidence 33457999999999999999999999999999999999999999999999853 3 56677889999999999999999
Q ss_pred c---------CCeEEEecChhhHH
Q 001400 382 S---------EGQIVYQGPRVSVL 396 (1085)
Q Consensus 382 ~---------~G~iv~~G~~~~~~ 396 (1085)
+ +|++++.|+.+++.
T Consensus 234 ~~~~~~~~~~~G~~~~~g~~~~~~ 257 (274)
T PRK14265 234 NTEIDEYGKRRGKLVEFSPTEQMF 257 (274)
T ss_pred ecccccccccCceEEEeCCHHHHH
Confidence 7 89999999998874
|
|
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-33 Score=309.61 Aligned_cols=208 Identities=24% Similarity=0.298 Sum_probs=165.5
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCC--ceeeEEEECCccCCCC-----CCCceEEEEccCCCC
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHL--QVSGKITYNGHGFKEF-----VPPRTSAYVSQQDWQ 220 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~--~~~G~i~~~G~~~~~~-----~~~~~~~yv~Q~d~~ 220 (1085)
+++|+|+|+.|++|++++|+||||||||||+++|+|.++|.. ..+|+|.++|.++... ..++.++|++|++.+
T Consensus 17 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~ 96 (252)
T PRK14272 17 KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAMRRRVGMVFQKPNP 96 (252)
T ss_pred EEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHHhhceeEEEeccCcc
Confidence 369999999999999999999999999999999999986531 1489999999887531 124579999999988
Q ss_pred CCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCc----cccc
Q 001400 221 VAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLD----TCAD 296 (1085)
Q Consensus 221 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~----~~~d 296 (1085)
++.+|+.||+.++....+.. ..+. ....++.+++.+++. +..+
T Consensus 97 ~~~~t~~enl~~~~~~~~~~-~~~~--------------------------------~~~~~~~~l~~~~l~~~l~~~~~ 143 (252)
T PRK14272 97 FPTMSVFDNVVAGLKLAGIR-DRDH--------------------------------LMEVAERSLRGAALWDEVKDRLK 143 (252)
T ss_pred CcCCCHHHHHHHHHHhcCCC-CHHH--------------------------------HHHHHHHHHHHcCcchhhhhhhc
Confidence 99999999998754322110 0000 011234445555543 2334
Q ss_pred ccccCcccccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcC
Q 001400 297 TLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFD 376 (1085)
Q Consensus 297 t~vg~~~~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D 376 (1085)
+ .++.||||||||++||+||+.+|++|+|||||+|||..++..+.+.|+++++ + ++++.++|+..++.+++|
T Consensus 144 ~-----~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~-~tiii~sH~~~~~~~~~d 215 (252)
T PRK14272 144 T-----PATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKK--V-TTIIIVTHNMHQAARVSD 215 (252)
T ss_pred C-----CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--C-CeEEEEeCCHHHHHHhCC
Confidence 3 3457999999999999999999999999999999999999999999998853 3 566668888899999999
Q ss_pred eEEEecCCeEEEecChhhHH
Q 001400 377 DVILLSEGQIVYQGPRVSVL 396 (1085)
Q Consensus 377 ~ii~L~~G~iv~~G~~~~~~ 396 (1085)
++++|++|++++.|+.+++.
T Consensus 216 ~i~~l~~G~i~~~~~~~~~~ 235 (252)
T PRK14272 216 TTSFFLVGDLVEHGPTDQLF 235 (252)
T ss_pred EEEEEECCEEEEeCCHHHHH
Confidence 99999999999999988764
|
|
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=310.21 Aligned_cols=211 Identities=23% Similarity=0.304 Sum_probs=166.6
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCC--ceeeEEEECCccCCCC-----CCCceEEEEccCCCC
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHL--QVSGKITYNGHGFKEF-----VPPRTSAYVSQQDWQ 220 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~--~~~G~i~~~G~~~~~~-----~~~~~~~yv~Q~d~~ 220 (1085)
+.+|+|+|++|++|++++|+||||||||||+++|+|.+++.. ..+|+|.++|+++... ..++.++|++|++.+
T Consensus 19 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~ 98 (253)
T PRK14261 19 KHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVALRRKIGMVFQRPNP 98 (253)
T ss_pred eeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchhhhhceEEEEecCCcc
Confidence 359999999999999999999999999999999999875321 2489999999987542 124579999999987
Q ss_pred CCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCccccccccc
Q 001400 221 VAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVG 300 (1085)
Q Consensus 221 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 300 (1085)
++. ||+||+.|..+..+.... . ..+..++.+++.++|.+...+..
T Consensus 99 ~~~-tv~eni~~~~~~~~~~~~-------------------~--------------~~~~~~~~~l~~~~l~~~l~~~~- 143 (253)
T PRK14261 99 FPK-SIYENVAYGPRIHGEKNK-------------------K--------------TLDTIVEKSLKGAALWDEVKDRL- 143 (253)
T ss_pred Ccc-cHHHHHHhhHHhcCCCCH-------------------H--------------HHHHHHHHHHHHhcCchhhHHHh-
Confidence 874 999999986543211000 0 00123556677777743211111
Q ss_pred CcccccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEE
Q 001400 301 DEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVIL 380 (1085)
Q Consensus 301 ~~~~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~ 380 (1085)
+...+.||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ + .+|+.++|+.+++.+++|++++
T Consensus 144 ~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~--~-~tvii~sh~~~~~~~~~d~v~~ 220 (253)
T PRK14261 144 HDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK--E-YTVIIVTHNMQQAARVSDYTGF 220 (253)
T ss_pred hcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhh--C-ceEEEEEcCHHHHHhhCCEEEE
Confidence 234567999999999999999999999999999999999999999999998864 3 4566688888999999999999
Q ss_pred ecCCeEEEecChhhHH
Q 001400 381 LSEGQIVYQGPRVSVL 396 (1085)
Q Consensus 381 L~~G~iv~~G~~~~~~ 396 (1085)
|++|+++..|+.+++.
T Consensus 221 l~~G~i~~~g~~~~~~ 236 (253)
T PRK14261 221 MYLGKLIEFDKTTQIF 236 (253)
T ss_pred EECCEEEEcCCHHHHH
Confidence 9999999999987763
|
|
| >PRK03695 vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=309.74 Aligned_cols=200 Identities=27% Similarity=0.396 Sum_probs=166.6
Q ss_pred ecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCC---CceEEEEccCCCCCCCCCH
Q 001400 150 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP---PRTSAYVSQQDWQVAEMTV 226 (1085)
Q Consensus 150 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~lTV 226 (1085)
+|+|+|+++++|++++|+||||||||||+++|+|.++ . +|+|.++|.++..... ++.++|++|++.+++.+||
T Consensus 11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~-~---~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv 86 (248)
T PRK03695 11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP-G---SGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPV 86 (248)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-C---CeEEEECCEecCcCCHHHHhhheEEecccCccCCCccH
Confidence 7999999999999999999999999999999999874 2 8999999988754332 3468999999887888999
Q ss_pred HHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCccccc
Q 001400 227 RETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKG 306 (1085)
Q Consensus 227 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 306 (1085)
+||+.+.... .. .. ......++++++.+||.+..++.+ +.
T Consensus 87 ~~nl~~~~~~-~~-~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-----~~ 126 (248)
T PRK03695 87 FQYLTLHQPD-KT-RT---------------------------------EAVASALNEVAEALGLDDKLGRSV-----NQ 126 (248)
T ss_pred HHHHHhcCcc-CC-Cc---------------------------------HHHHHHHHHHHHHcCCHhHhcCCc-----cc
Confidence 9999875211 00 00 000123678899999987666554 46
Q ss_pred CchhhhhHHHHHHHHhC-------CCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEE
Q 001400 307 ISGGQKKRLTTGELLVG-------PARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVI 379 (1085)
Q Consensus 307 LSGGqkqRvsia~al~~-------~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii 379 (1085)
||||||||++||+||+. +|++++|||||+|||+.++..+.+.|+++++. +++|+.++|+..++..++|+++
T Consensus 127 LS~G~~qrv~la~al~~~~~~~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~--~~tvi~~sH~~~~~~~~~d~i~ 204 (248)
T PRK03695 127 LSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQ--GIAVVMSSHDLNHTLRHADRVW 204 (248)
T ss_pred CCHHHHHHHHHHHHHhccccccCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhC--CCEEEEEecCHHHHHHhCCEEE
Confidence 99999999999999997 67999999999999999999999999998653 4566668899999999999999
Q ss_pred EecCCeEEEecChhhH
Q 001400 380 LLSEGQIVYQGPRVSV 395 (1085)
Q Consensus 380 ~L~~G~iv~~G~~~~~ 395 (1085)
+|++|++++.|+.+++
T Consensus 205 ~l~~G~i~~~g~~~~~ 220 (248)
T PRK03695 205 LLKQGKLLASGRRDEV 220 (248)
T ss_pred EEECCEEEEECCHHHH
Confidence 9999999999987765
|
|
| >TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=305.34 Aligned_cols=190 Identities=25% Similarity=0.298 Sum_probs=155.3
Q ss_pred eEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEc--Cc--cCCh---hc----ccceEEEEccC
Q 001400 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYIS--GY--PKRQ---ET----FARISGYCEQN 910 (1085)
Q Consensus 842 ~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~--g~--~~~~---~~----~~~~~gy~~Q~ 910 (1085)
..+|+|+||+|++||+++|+|+||||||||+++|+|... +.+|+|.++ |. +... .. .++.+||++|+
T Consensus 21 ~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~ 98 (224)
T TIGR02324 21 LPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYL--PDSGRILVRHEGAWVDLAQASPREVLEVRRKTIGYVSQF 98 (224)
T ss_pred eEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCeEEEecCCCccchhhcCHHHHHHHHhcceEEEecc
Confidence 579999999999999999999999999999999999866 468999998 42 3221 11 23569999999
Q ss_pred CCCCCCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcc-cccccCCCCCCCCCHHHHHHHHHHHHHhcCCCE
Q 001400 911 DIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSL-SGALIGLPGINGLSTEQRKRLTIAVELVANPSI 989 (1085)
Q Consensus 911 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~i 989 (1085)
+.+++.+|+.|++.+..... ........+.+.++++.+++.+. .+.. +.+||+|||||++|||||+.+|++
T Consensus 99 ~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LS~G~~qrl~laral~~~p~l 170 (224)
T TIGR02324 99 LRVIPRVSALEVVAEPLLER---GVPREAARARARELLARLNIPERLWHLP-----PATFSGGEQQRVNIARGFIADYPI 170 (224)
T ss_pred cccCCCccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhhCC-----cccCCHHHHHHHHHHHHHhcCCCE
Confidence 98999999999998754322 11222334567788999888652 2332 357999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEE
Q 001400 990 VFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFM 1042 (1085)
Q Consensus 990 lllDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l 1042 (1085)
|+|||||+|||+.++..+.+.|+++.++|.|||++||+++ .+...+|+++.+
T Consensus 171 lllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~-~~~~~~d~i~~~ 222 (224)
T TIGR02324 171 LLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEE-VRELVADRVMDV 222 (224)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcceeEec
Confidence 9999999999999999999999999777999999999965 355689998876
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. |
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-34 Score=309.99 Aligned_cols=206 Identities=24% Similarity=0.339 Sum_probs=157.9
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCC---CCceEEEEccCCCCCCCC
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV---PPRTSAYVSQQDWQVAEM 224 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~---~~~~~~yv~Q~d~~~~~l 224 (1085)
+++|+|+|+++++|++++|+||||||||||+++|+|.+++. +|+|.++|.++.... .++.++|++|++.+++ .
T Consensus 16 ~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~ 91 (238)
T cd03249 16 VPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPT---SGEILLDGVDIRDLNLRWLRSQIGLVSQEPVLFD-G 91 (238)
T ss_pred ccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCC---CCEEEECCEehhhcCHHHHHhhEEEECCchhhhh-h
Confidence 46999999999999999999999999999999999998776 999999998765332 1356999999987665 6
Q ss_pred CHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHh--CCcccccccccCc
Q 001400 225 TVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKIL--GLDTCADTLVGDE 302 (1085)
Q Consensus 225 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~l--gL~~~~dt~vg~~ 302 (1085)
||+||+.+...... .+ +..... +. ......++.+ |+....+ .
T Consensus 92 tv~e~l~~~~~~~~----~~---~~~~~~---------------~~---------~~~~~~~~~l~~~~~~~~~-----~ 135 (238)
T cd03249 92 TIAENIRYGKPDAT----DE---EVEEAA---------------KK---------ANIHDFIMSLPDGYDTLVG-----E 135 (238)
T ss_pred hHHHHhhccCCCCC----HH---HHHHHH---------------HH---------cChHHHHHhhccccceeec-----c
Confidence 99999987532110 00 000000 00 0012223333 3433333 2
Q ss_pred ccccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEec
Q 001400 303 MLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLS 382 (1085)
Q Consensus 303 ~~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~ 382 (1085)
.++.|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++. .+ ++|+.++|+.+++. .||++++|+
T Consensus 136 ~~~~LS~G~~qrv~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~--~g-~~vi~~sh~~~~~~-~~d~v~~l~ 211 (238)
T cd03249 136 RGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAM--KG-RTTIVIAHRLSTIR-NADLIAVLQ 211 (238)
T ss_pred CCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc--CC-CEEEEEeCCHHHHh-hCCEEEEEE
Confidence 346799999999999999999999999999999999999999999999874 24 45555777778875 899999999
Q ss_pred CCeEEEecChhhHHH
Q 001400 383 EGQIVYQGPRVSVLD 397 (1085)
Q Consensus 383 ~G~iv~~G~~~~~~~ 397 (1085)
+|++++.|+.+++.+
T Consensus 212 ~G~i~~~~~~~~~~~ 226 (238)
T cd03249 212 NGQVVEQGTHDELMA 226 (238)
T ss_pred CCEEEEeCCHHHHhh
Confidence 999999999877654
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=309.99 Aligned_cols=210 Identities=22% Similarity=0.306 Sum_probs=165.3
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCC--CceeeEEEECCccCCC-C---CCCceEEEEccCCCCC
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHH--LQVSGKITYNGHGFKE-F---VPPRTSAYVSQQDWQV 221 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~--~~~~G~i~~~G~~~~~-~---~~~~~~~yv~Q~d~~~ 221 (1085)
+.+|+|+|+.|++|++++|+||||||||||+++|+|.+++. .+.+|+|.++|.++.. . ..++.++|++|++.++
T Consensus 16 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~ 95 (249)
T PRK14253 16 NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADLRIKVGMVFQKPNPF 95 (249)
T ss_pred eeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHHHhheeEEecCCCcC
Confidence 46999999999999999999999999999999999987642 1248999999987642 1 1245799999999878
Q ss_pred CCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccC
Q 001400 222 AEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGD 301 (1085)
Q Consensus 222 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 301 (1085)
+ .||.||+.++....+.... . .....+++.++.+|+.+...... +
T Consensus 96 ~-~tv~~~l~~~~~~~~~~~~-------------------~--------------~~~~~~~~~~~~~~l~~~~~~~~-~ 140 (249)
T PRK14253 96 P-MSIYENVAYGLRAQGIKDK-------------------K--------------VLDEVVERSLRGAALWDEVKDRL-K 140 (249)
T ss_pred c-ccHHHHHHhHHHhcCCCch-------------------H--------------HHHHHHHHHHHHcCCchhhhHHh-h
Confidence 7 8999999876432111000 0 00123556677777653221111 2
Q ss_pred cccccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEe
Q 001400 302 EMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILL 381 (1085)
Q Consensus 302 ~~~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L 381 (1085)
.....|||||||||+|||||+.+|++++|||||+|||+.++..+.+.|+++++ + ++|+.++|+..++.+++|++++|
T Consensus 141 ~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~-~tii~~sh~~~~~~~~~d~i~~l 217 (249)
T PRK14253 141 SHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKK--N-YTIVIVTHSMQQARRISDRTAFF 217 (249)
T ss_pred cCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--C-CeEEEEecCHHHHHHhCCEEEEE
Confidence 34457999999999999999999999999999999999999999999999864 3 45666788889999999999999
Q ss_pred cCCeEEEecChhhH
Q 001400 382 SEGQIVYQGPRVSV 395 (1085)
Q Consensus 382 ~~G~iv~~G~~~~~ 395 (1085)
++|++++.|+.+++
T Consensus 218 ~~G~i~~~g~~~~~ 231 (249)
T PRK14253 218 LMGELVEHDDTQVI 231 (249)
T ss_pred ECCEEEEeCCHHHH
Confidence 99999999987765
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-34 Score=327.13 Aligned_cols=210 Identities=28% Similarity=0.361 Sum_probs=177.0
Q ss_pred cceeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCC-----CCCceEEEEccCC--
Q 001400 146 SKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEF-----VPPRTSAYVSQQD-- 218 (1085)
Q Consensus 146 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~-----~~~~~~~yv~Q~d-- 218 (1085)
....+++||||.+++||+++|+|+||||||||.++|+|+++|. +|+|.++|.+.+.. ..++.+-+|+|++
T Consensus 302 ~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~---~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~ 378 (539)
T COG1123 302 GEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPS---SGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYS 378 (539)
T ss_pred cceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEEeCcccccccchhhhhhhheEEEEeCccc
Confidence 4568999999999999999999999999999999999999886 99999999872211 1235677888886
Q ss_pred CCCCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCccccccc
Q 001400 219 WQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTL 298 (1085)
Q Consensus 219 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~ 298 (1085)
.+.|.+||+++|.......+... ..+.+.+++++++..||+..
T Consensus 379 SLnPr~tV~~~i~epL~~~~~~~---------------------------------~~~~~~rv~~ll~~VgL~~~---- 421 (539)
T COG1123 379 SLNPRMTVGDILAEPLRIHGGGS---------------------------------GAERRARVAELLELVGLPPE---- 421 (539)
T ss_pred ccCccccHHHHHHhHHhhhcccc---------------------------------hHHHHHHHHHHHHHcCCCHH----
Confidence 57899999999987665433211 01123358999999999842
Q ss_pred ccCcccccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeE
Q 001400 299 VGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDV 378 (1085)
Q Consensus 299 vg~~~~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i 378 (1085)
..++++..|||||||||+|||||+.+|+++++|||||+||++++.++.++|+++.++.+ .+.+.++|+..-+..+||||
T Consensus 422 ~l~ryP~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g-~t~lfISHDl~vV~~i~drv 500 (539)
T COG1123 422 FLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELG-LTYLFISHDLAVVRYIADRV 500 (539)
T ss_pred HHhcCchhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhC-CEEEEEeCCHHHHHhhCceE
Confidence 33466778999999999999999999999999999999999999999999999988764 56667999999999999999
Q ss_pred EEecCCeEEEecChhhHH
Q 001400 379 ILLSEGQIVYQGPRVSVL 396 (1085)
Q Consensus 379 i~L~~G~iv~~G~~~~~~ 396 (1085)
++|++|+||..||.+++.
T Consensus 501 ~vm~~G~iVE~G~~~~v~ 518 (539)
T COG1123 501 AVMYDGRIVEEGPTEKVF 518 (539)
T ss_pred EEEECCeEEEeCCHHHHh
Confidence 999999999999998884
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 1085 | ||||
| 4hlu_D | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 7e-14 | ||
| 1mv5_A | 243 | Crystal Structure Of Lmra Atp-Binding Domain Length | 4e-10 | ||
| 2pmk_A | 243 | Crystal Structures Of An Isolated Abc-Atpase In Com | 7e-10 | ||
| 1mt0_A | 241 | Atp-Binding Domain Of Haemolysin B From Escherichia | 8e-10 | ||
| 2ff7_A | 247 | The Abc-Atpase Of The Abc-Transporter Hlyb In The A | 8e-10 | ||
| 3c41_J | 242 | Abc Protein Artp In Complex With Amp-PnpMG2+ Length | 9e-10 | ||
| 2olj_A | 263 | Abc Protein Artp In Complex With AdpMG2+ Length = 2 | 1e-09 | ||
| 1q12_A | 381 | Crystal Structure Of The Atp-bound E. Coli Malk Len | 1e-09 | ||
| 3b5j_A | 243 | Crystal Structures Of The S504a Mutant Of An Isolat | 1e-09 | ||
| 1q1b_A | 381 | Crystal Structure Of E. Coli Malk In The Nucleotide | 2e-09 | ||
| 2hyd_A | 578 | Multidrug Abc Transporter Sav1866 Length = 578 | 2e-09 | ||
| 2ffb_A | 247 | The Crystal Structure Of The Hlyb-Nbd E631q Mutant | 2e-09 | ||
| 1l2t_A | 235 | Dimeric Structure Of Mj0796, A Bacterial Abc Transp | 3e-09 | ||
| 2r6g_A | 381 | The Crystal Structure Of The E. Coli Maltose Transp | 3e-09 | ||
| 3tif_A | 235 | Dimeric Structure Of A Post-Hydrolysis State Of The | 5e-09 | ||
| 1vci_A | 373 | Crystal Structure Of The Atp-binding Cassette Of Mu | 7e-09 | ||
| 1v43_A | 372 | Crystal Structure Of Atpase Subunit Of Abc Sugar Tr | 7e-09 | ||
| 1oxx_K | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 7e-09 | ||
| 3qf4_B | 598 | Crystal Structure Of A Heterodimeric Abc Transporte | 8e-09 | ||
| 1oxs_C | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 1e-08 | ||
| 1xef_A | 241 | Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI | 1e-08 | ||
| 2ffa_A | 247 | Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr | 1e-08 | ||
| 2yyz_A | 359 | Crystal Structure Of Sugar Abc Transporter, Atp-Bin | 1e-08 | ||
| 3dhw_C | 343 | Crystal Structure Of Methionine Importer Metni Leng | 3e-08 | ||
| 1f3o_A | 235 | Crystal Structure Of Mj0796 Atp-Binding Cassette Le | 5e-08 | ||
| 2it1_A | 362 | Structure Of Ph0203 Protein From Pyrococcus Horikos | 6e-08 | ||
| 3tui_C | 366 | Inward Facing Conformations Of The Metni Methionine | 6e-08 | ||
| 3g60_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 7e-08 | ||
| 3g5u_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 7e-08 | ||
| 1g6h_A | 257 | Crystal Structure Of The Adp Conformation Of Mj1267 | 1e-07 | ||
| 1g9x_A | 257 | Characterization Of The Twinning Structure Of Mj126 | 2e-07 | ||
| 3tuj_C | 366 | Inward Facing Conformations Of The Metni Methionine | 2e-07 | ||
| 4f4c_A | 1321 | The Crystal Structure Of The Multi-Drug Transporter | 2e-07 | ||
| 1gaj_A | 257 | Crystal Structure Of A Nucleotide-Free Atp-Binding | 2e-07 | ||
| 4ayw_A | 619 | Structure Of The Human Mitochondrial Abc Transporte | 5e-07 | ||
| 4ayt_A | 595 | Structure Of The Human Mitochondrial Abc Transporte | 6e-07 | ||
| 3b5w_A | 582 | Crystal Structure Of Eschericia Coli Msba Length = | 6e-07 | ||
| 2ghi_A | 260 | Crystal Structure Of Plasmodium Yoelii Multidrug Re | 8e-07 | ||
| 3b5y_A | 582 | Crystal Structure Of Msba From Salmonella Typhimuri | 1e-06 | ||
| 1g29_1 | 372 | Malk Length = 372 | 2e-06 | ||
| 3b5x_A | 582 | Crystal Structure Of Msba From Vibrio Cholerae Leng | 2e-06 | ||
| 2ixf_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 2e-06 | ||
| 2d2e_A | 250 | Crystal Structure Of Atypical Cytoplasmic Abc-Atpas | 5e-06 | ||
| 3nh6_A | 306 | Nucleotide Binding Domain Of Human Abcb6 (Apo Struc | 5e-06 | ||
| 1z47_A | 355 | Structure Of The Atpase Subunit Cysa Of The Putativ | 7e-06 | ||
| 3gfo_A | 275 | Structure Of Cbio1 From Clostridium Perfringens: Pa | 9e-06 | ||
| 3ozx_A | 538 | Crystal Structure Of Abce1 Of Sulfolubus Solfataric | 1e-05 | ||
| 3qf4_A | 587 | Crystal Structure Of A Heterodimeric Abc Transporte | 1e-05 | ||
| 3qf4_A | 587 | Crystal Structure Of A Heterodimeric Abc Transporte | 3e-05 | ||
| 1b0u_A | 262 | Atp-Binding Subunit Of The Histidine Permease From | 3e-05 | ||
| 1jj7_A | 260 | Crystal Structure Of The C-Terminal Atpase Domain O | 3e-05 | ||
| 3j16_B | 608 | Models Of Ribosome-Bound Dom34p And Rli1p And Their | 3e-05 | ||
| 2yz2_A | 266 | Crystal Structure Of The Abc Transporter In The Cob | 4e-05 | ||
| 2ixe_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 4e-05 | ||
| 4hlu_A | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 4e-05 | ||
| 2pcj_A | 224 | Crystal Structure Of Abc Transporter (Aq_297) From | 5e-05 | ||
| 2d3w_A | 248 | Crystal Structure Of Escherichia Coli Sufc, An Atpa | 5e-05 | ||
| 2ixg_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 6e-05 | ||
| 2nq2_C | 253 | An Inward-Facing Conformation Of A Putative Metal-C | 7e-05 | ||
| 2zu0_C | 267 | Crystal Structure Of Sufc-Sufd Complex Involved In | 7e-05 | ||
| 1vpl_A | 256 | Crystal Structure Of Abc Transporter Atp-binding Pr | 8e-05 | ||
| 3bk7_A | 607 | Structure Of The Complete Abce1RNAASE-L Inhibitor P | 9e-05 | ||
| 2d62_A | 375 | Crystal Structure Of Multiple Sugar Binding Transpo | 9e-05 | ||
| 3j15_B | 593 | Model Of Ribosome-Bound Archaeal Pelota And Abce1 L | 1e-04 | ||
| 1yqt_A | 538 | Rnase-L Inhibitor Length = 538 | 1e-04 | ||
| 2cbz_A | 237 | Structure Of The Human Multidrug Resistance Protein | 2e-04 | ||
| 2ihy_A | 279 | Structure Of The Staphylococcus Aureus Putative Atp | 2e-04 | ||
| 1ji0_A | 240 | Crystal Structure Analysis Of The Abc Transporter F | 2e-04 | ||
| 3fvq_A | 359 | Crystal Structure Of The Nucleotide Binding Domain | 2e-04 | ||
| 4dbl_C | 249 | Crystal Structure Of E159q Mutant Of Btucdf Length | 3e-04 | ||
| 1l7v_C | 249 | Bacterial Abc Transporter Involved In B12 Uptake Le | 3e-04 | ||
| 4fi3_C | 249 | Structure Of Vitamin B12 Transporter Btucd-F In A N | 5e-04 | ||
| 2qi9_C | 249 | Abc-Transporter Btucd In Complex With Its Periplasm | 5e-04 | ||
| 2onk_A | 240 | Abc Transporter Modbc In Complex With Its Binding P | 5e-04 | ||
| 3d31_A | 348 | Modbc From Methanosarcina Acetivorans Length = 348 | 8e-04 |
| >pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain Length = 243 | Back alignment and structure |
|
| >pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243 | Back alignment and structure |
|
| >pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241 | Back alignment and structure |
|
| >pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247 | Back alignment and structure |
|
| >pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+ Length = 242 | Back alignment and structure |
|
| >pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+ Length = 263 | Back alignment and structure |
|
| >pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk Length = 381 | Back alignment and structure |
|
| >pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243 | Back alignment and structure |
|
| >pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free Form Length = 381 | Back alignment and structure |
|
| >pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578 | Back alignment and structure |
|
| >pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter Cassette Length = 235 | Back alignment and structure |
|
| >pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter Length = 381 | Back alignment and structure |
|
| >pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The Atp-Binding Cassette Mj0796 Bound To Adp And Pi Length = 235 | Back alignment and structure |
|
| >pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar Transporter From Pyrococcus Horikoshii Ot3 Complexed With Atp Length = 373 | Back alignment and structure |
|
| >pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter Length = 372 | Back alignment and structure |
|
| >pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 598 | Back alignment and structure |
|
| >pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241 | Back alignment and structure |
|
| >pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding Protein Length = 359 | Back alignment and structure |
|
| >pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni Length = 343 | Back alignment and structure |
|
| >pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette Length = 235 | Back alignment and structure |
|
| >pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362 | Back alignment and structure |
|
| >pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Cy5 Native Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An Atp- Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An Atp-Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Dm Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321 | Back alignment and structure |
|
| >pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding Cassette From An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619 | Back alignment and structure |
|
| >pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595 | Back alignment and structure |
|
| >pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba Length = 582 | Back alignment and structure |
|
| >pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance Protein 2 Length = 260 | Back alignment and structure |
|
| >pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With Amppnp Length = 582 | Back alignment and structure |
|
| >pdb|1G29|1 Chain 1, Malk Length = 372 | Back alignment and structure |
|
| >pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae Length = 582 | Back alignment and structure |
|
| >pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (D645q, Q678h Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc From Thermus Thermophilus Hb8 Length = 250 | Back alignment and structure |
|
| >pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure) Length = 306 | Back alignment and structure |
|
| >pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355 | Back alignment and structure |
|
| >pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The Abc Transporter Complex Cbionq Length = 275 | Back alignment and structure |
|
| >pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus (-Fes Domain) Length = 538 | Back alignment and structure |
|
| >pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 587 | Back alignment and structure |
|
| >pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 587 | Back alignment and structure |
|
| >pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From Salmonella Typhimurium Length = 262 | Back alignment and structure |
|
| >pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human Tap1 Length = 260 | Back alignment and structure |
|
| >pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their Ribosomal Binding Partners Length = 608 | Back alignment and structure |
|
| >pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt Transport System Length = 266 | Back alignment and structure |
|
| >pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (d645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex Aeolicus Vf5 Length = 224 | Back alignment and structure |
|
| >pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase Compenent Of The Suf Iron-Sulfur Cluster Assembly Machinery Length = 248 | Back alignment and structure |
|
| >pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (S621a, G622v, D645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate Type Abc Transporter. Length = 253 | Back alignment and structure |
|
| >pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The Iron- Sulfur Cluster Biosynthesis Length = 267 | Back alignment and structure |
|
| >pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein (tm0544) From Thermotoga Maritima At 2.10 A Resolution Length = 256 | Back alignment and structure |
|
| >pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein From Pyrococcus Abysii Length = 607 | Back alignment and structure |
|
| >pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp- Binding Protein Length = 375 | Back alignment and structure |
|
| >pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1 Length = 593 | Back alignment and structure |
|
| >pdb|1YQT|A Chain A, Rnase-L Inhibitor Length = 538 | Back alignment and structure |
|
| >pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1 Nucleotide Binding Domain 1 Length = 237 | Back alignment and structure |
|
| >pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase Subunit Of An Atp-Binding Cassette (Abc) Transporter Length = 279 | Back alignment and structure |
|
| >pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From Thermotoga Maritima Length = 240 | Back alignment and structure |
|
| >pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc Complexed With Atp Length = 359 | Back alignment and structure |
|
| >pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf Length = 249 | Back alignment and structure |
|
| >pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake Length = 249 | Back alignment and structure |
|
| >pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A Nucleotide-Bound State Length = 249 | Back alignment and structure |
|
| >pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic Binding Protein Btuf Length = 249 | Back alignment and structure |
|
| >pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein Moda Length = 240 | Back alignment and structure |
|
| >pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans Length = 348 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 108 bits (272), Expect = 2e-26
Identities = 48/218 (22%), Positives = 86/218 (39%), Gaps = 34/218 (15%)
Query: 844 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGYPKRQETFA 901
L + G + A++G +G GK+TL+D+L G R G IE
Sbjct: 20 LFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIE--------------VY 65
Query: 902 RISGYCEQNDIHSPGLTVLESLLF-----SAWLRLPSEIELETQRAFVEEVMELVELTSL 956
+ G+ Q +VL+ +L P + + ++ + LT L
Sbjct: 66 QSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHD----YQVAMQALDYLNLTHL 121
Query: 957 SGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIV- 1015
+ LS QR+ + IA + + ++ +DEPTS LD IV+ + ++
Sbjct: 122 AKREF-----TSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQ 176
Query: 1016 NTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGP 1053
+ T+V T HQP+ + ++ L + + G
Sbjct: 177 SQNMTVVFTTHQPNQ-VVAIANKTLLLNKQ--NFKFGE 211
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 69.1 bits (170), Expect = 5e-13
Identities = 47/269 (17%), Positives = 91/269 (33%), Gaps = 55/269 (20%)
Query: 130 MTEAL-LRQLRI-YRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGH 187
M +AL + L Y+ + L+ + + +LG GK+TLL L G
Sbjct: 1 MNKALSVENLGFYYQAEN---FLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRP 57
Query: 188 HLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMIT 247
GKI ++ +V Q +V + V M
Sbjct: 58 I---QGKIEVY----------QSIGFVPQFFSSPFAYSVLDI---------VL----M-- 89
Query: 248 ELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGI 307
G + +FA V + L L A +
Sbjct: 90 ---------GRST------HINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTS-----L 129
Query: 308 SGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQP 367
SGGQ++ + + +++ +DE ++ LD + ++ L ++ + T V + QP
Sbjct: 130 SGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQP 189
Query: 368 APEAYELFDDVILLSEGQIVYQGPRVSVL 396
+ + + +LL++ + G ++L
Sbjct: 190 N-QVVAIANKTLLLNKQNFKF-GETRNIL 216
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 102 bits (257), Expect = 2e-24
Identities = 45/179 (25%), Positives = 75/179 (41%), Gaps = 18/179 (10%)
Query: 853 RPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGYPKRQETFA--RISGYCE 908
G + L+G +GAGKTT + +++ + + G + + G +E ++ Y
Sbjct: 39 EEGEIFGLIGPNGAGKTTTLRIISTLIKPS----SGIVTVFGKNVVEEPHEVRKLISYLP 94
Query: 909 QNDIHSPGLTVLESLLFSAWL-RLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGIN 967
+ + +E L F A S E+E VE E+ L +
Sbjct: 95 EEAGAYRNMQGIEYLRFVAGFYASSSS-EIEEM---VERATEIAGLGEKIKDRVS----- 145
Query: 968 GLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIH 1026
S ++L IA L+ NP + +DEPTSGLD A V + ++ G TI+ + H
Sbjct: 146 TYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSH 204
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 71.0 bits (175), Expect = 1e-13
Identities = 56/254 (22%), Positives = 85/254 (33%), Gaps = 62/254 (24%)
Query: 147 KLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKE-- 204
K IL +S I + L+GP +GKTT L ++ + SG +T G E
Sbjct: 27 KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIK---PSSGIVTVFGKNVVEEP 83
Query: 205 --------FVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIA 256
++P AY M E L F S E+
Sbjct: 84 HEVRKLISYLPEEAGAY--------RNMQGIEYLRFVAGFYASSSS-----EIEEM---- 126
Query: 257 GIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLT 316
VE +I GL V S G ++L
Sbjct: 127 -------------------------VERATEIAGLGEKIKDRV-----STYSKGMVRKLL 156
Query: 317 TGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFD 376
L+ R+ +DE ++GLD ++ K LK +++ +G T++ E L D
Sbjct: 157 IARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQ--EGLTILVSSHNMLEVEFLCD 214
Query: 377 DVILLSEGQIVYQG 390
+ L+ G IV G
Sbjct: 215 RIALIHNGTIVETG 228
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 100 bits (252), Expect = 9e-24
Identities = 45/223 (20%), Positives = 83/223 (37%), Gaps = 32/223 (14%)
Query: 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG-RKTGGIIE-GDIYISGYPKRQETF 900
L ++G R G + LVG +GAGK+TL+ +AG G I+ + + +
Sbjct: 14 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGKGSIQFAGQPLEAWSATK--L 71
Query: 901 ARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGAL 960
A Y Q V L + +T+ + +V + L G
Sbjct: 72 ALHRAYLSQQQTPPFATPVWHYLTLH---QHD-----KTRTELLNDVAGALALDDKLGRS 123
Query: 961 IGLPGINGLSTEQRKRLTIA-------VELVANPSIVFMDEPTSGLDARAAAIVMRTVRN 1013
N LS + +R+ +A + ++ +DEP + LD + + + +
Sbjct: 124 T-----NQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSA 178
Query: 1014 IVNTGRTIVCTIHQPSIDI---FESFDELLFMKRGGELIYAGP 1053
+ G IV + H D+ +K GG+++ +G
Sbjct: 179 LSQQGLAIVMSSH----DLNHTLRHAHRAWLLK-GGKMLASGR 216
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 74.5 bits (184), Expect = 9e-15
Identities = 54/283 (19%), Positives = 90/283 (31%), Gaps = 78/283 (27%)
Query: 130 MTEAL-LRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHH 188
M+ + L+ + T L LSG +R + L+GP +GK+TLL +AG
Sbjct: 1 MSIVMQLQDV----AES---TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG- 52
Query: 189 LQVSGKITYNGHGFKEFVPP---RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDM 245
G I + G + + AY+SQQ V L
Sbjct: 53 ---KGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYL--------------- 94
Query: 246 ITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLK 305
L + ++ + + L LD
Sbjct: 95 --TLHQH-------DKTRTEL---------------LNDVAGALALDDKLGRSTNQ---- 126
Query: 306 GISGGQKKRL--------TTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALD 357
+SGG+ +R+ T + ++L +DE N LD + + K L ++
Sbjct: 127 -LSGGEWQRVRLAAVVLQITPQANPAG-QLLLLDEPMNSLDVAQQSALDKILSALSQQ-- 182
Query: 358 GTTVISLL----QPAPEAYELFDDVILLSEGQIVYQGPRVSVL 396
G ++ A LL G+++ G R VL
Sbjct: 183 GLAIVMSSHDLNHTLRHA----HRAWLLKGGKMLASGRREEVL 221
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 99.2 bits (248), Expect = 5e-23
Identities = 50/240 (20%), Positives = 111/240 (46%), Gaps = 25/240 (10%)
Query: 827 DVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEG 886
+ ++L Q G ++ +L ++ G L G++GAGKTTL+++L + G
Sbjct: 19 HMLIQLDQIGRMKQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEP--ATSG 76
Query: 887 DIYISGYPKRQETF------ARISGYCEQNDIH---SPGLTVLESLL--FSAWLRLPSEI 935
+ + G + + I G+ + G V++ ++ + + +I
Sbjct: 77 TVNLFGKMPGKVGYSAETVRQHI-GFVSH-SLLEKFQEGERVIDVVISGAFKSIGVYQDI 134
Query: 936 ELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEP 995
+ + R ++++LV +++ + IG LST +++R+ IA L+ P ++ +DEP
Sbjct: 135 D-DEIRNEAHQLLKLVGMSAKAQQYIG-----YLSTGEKQRVMIARALMGQPQVLILDEP 188
Query: 996 TSGLDARAAAIVMRTVRNIVNTGR--TIVCTIHQPSIDIFESFDELLFMKRGGELIYAGP 1053
+GLD A ++ + ++ ++ ++ H +I +F ++L +K G+ I G
Sbjct: 189 AAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIE-EITANFSKILLLKD-GQSIQQGA 246
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 88.4 bits (220), Expect = 2e-19
Identities = 59/298 (19%), Positives = 105/298 (35%), Gaps = 57/298 (19%)
Query: 108 TVESFVHLGSRALPTIPNFIFNMTEALLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLL 167
+ H S +P + + + Q+ + + TIL +S I +L
Sbjct: 2 SSHHHHHHSSGLVPRGSHMLIQL-----DQIGRMKQGK---TILKKISWQIAKGDKWILY 53
Query: 168 GPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSA-----YVSQ---QDW 219
G +GKTTLL L SG + G + + +VS + +
Sbjct: 54 GLNGAGKTTLLNILNAY---EPATSGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKF 110
Query: 220 QVAEMTVRETLDFAGQCQGVGS-KYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKT 278
Q E V + V S + I + DE +
Sbjct: 111 QEGE-RVIDV---------VISGAFKSI-------GVYQDIDDEIRNE------------ 141
Query: 279 SLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLD 338
++K++G+ A +G +S G+K+R+ L+G +VL +DE + GLD
Sbjct: 142 ---AHQLLKLVGMSAKAQQYIGY-----LSTGEKQRVMIARALMGQPQVLILDEPAAGLD 193
Query: 339 SSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVL 396
++ L + + +I + E F ++LL +GQ + QG +L
Sbjct: 194 FIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGAVEDIL 251
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 93.7 bits (234), Expect = 9e-22
Identities = 37/196 (18%), Positives = 78/196 (39%), Gaps = 25/196 (12%)
Query: 853 RPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGYPKRQETFARISGYCEQN 910
G + G +G GKTTL+ ++ + +G+I +G P + +I + +
Sbjct: 33 EKGNVVNFHGPNGIGKTTLLKTISTYLKPL----KGEIIYNGVPIT-KVKGKI-FFLPEE 86
Query: 911 DIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLS 970
I ++V + L A L ++ + + + +E VE+ L + LS
Sbjct: 87 IIVPRKISVEDYLKAVASLY-----GVKVNKNEIMDALESVEVLDLKKK------LGELS 135
Query: 971 TEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIV-NTGRTIVCTIHQPS 1029
+R+ +A L+ N I +D+P +D + V++++ I+ G I+ +
Sbjct: 136 QGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSRE--- 192
Query: 1030 IDIFESFDELLFMKRG 1045
D + +
Sbjct: 193 --ELSYCDVNENLHKY 206
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 73.3 bits (181), Expect = 1e-14
Identities = 37/248 (14%), Positives = 80/248 (32%), Gaps = 64/248 (25%)
Query: 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKE---- 204
+L+ ++ I + GP GKTTLL ++ L + G+I YNG +
Sbjct: 23 PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK---PLKGEIIYNGVPITKVKGK 79
Query: 205 --FVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDE 262
F+P +++V + L + G+K ++
Sbjct: 80 IFFLPEEIIVP--------RKISVEDYLKAVA-------------------SLYGVKVNK 112
Query: 263 DLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLV 322
+ + ++ + + L +S G +R+ L+
Sbjct: 113 NE-----------------IMDALESVEVLDLKKKL------GELSQGTIRRVQLASTLL 149
Query: 323 GPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLS 382
A + +D+ +D + ++++K + + G +IS + E D L
Sbjct: 150 VNAEIYVLDDPVVAIDEDSKHKVLKSILEILKE-KGIVIIS----SREELSYCDVNENLH 204
Query: 383 EGQIVYQG 390
+
Sbjct: 205 KYSTKIDK 212
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 85.5 bits (212), Expect = 2e-18
Identities = 39/215 (18%), Positives = 78/215 (36%), Gaps = 49/215 (22%)
Query: 854 PGVLTALVGVSGAGKTTLMDVLAG-RKTGGIIEGDIYISGYPKRQETFARISGYCEQN-D 911
G ++G +G+GKTTL+ ++G G+I+I+G Y +
Sbjct: 29 NGEKVIILGPNGSGKTTLLRAISGLLPY----SGNIFING--MEVRKIRNYIRYSTNLPE 82
Query: 912 IHSPGLTVLESLLFSAWLR-LPSEIELETQRAFVEEVMELVELTS---------LSGALI 961
+ G+TV + + L+ L ++ E+++ ++L LS
Sbjct: 83 AYEIGVTVNDIVYLYEELKGLDRDL--------FLEMLKALKLGEEILRRKLYKLSA--- 131
Query: 962 GLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTI 1021
G Q + ++ L + P IV +DEP +DA ++ R ++ G+
Sbjct: 132 ------G----QSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEY---GKEG 178
Query: 1022 VCTIHQPSIDIFESF---DELLFMKRGGELIYAGP 1053
+ H ++ + + G L
Sbjct: 179 ILVTH----ELDMLNLYKEYKAYFLVGNRLQGPIS 209
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 66.2 bits (162), Expect = 7e-12
Identities = 44/255 (17%), Positives = 84/255 (32%), Gaps = 63/255 (24%)
Query: 140 IYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNG 199
G + L++++ + ++LGP SGKTTLL A++G L SG I NG
Sbjct: 10 TLSGKGYERFSLENINLEV-NGEKVIILGPNGSGKTTLLRAISGL----LPYSGNIFING 64
Query: 200 HGFKEFVPPRTSAYVSQQ-DWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGI 258
++ Y + + +TV + + + +G+ R+
Sbjct: 65 MEVRKI--RNYIRYSTNLPEAYEIGVTVNDIVYLYEELKGL-----------DRDL---- 107
Query: 259 KPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLK----GISGGQKKR 314
++K L L +E+L+ +S GQ
Sbjct: 108 -----------------------FLEMLKALKLG--------EEILRRKLYKLSAGQSVL 136
Query: 315 LTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYEL 374
+ T L ++ +DE +D++ + I +Y+K G I +
Sbjct: 137 VRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEY-----GKEGILVTHELDMLNLY 191
Query: 375 FDDVILLSEGQIVYQ 389
+ G +
Sbjct: 192 KEYKAYFLVGNRLQG 206
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 86.2 bits (214), Expect = 2e-17
Identities = 40/190 (21%), Positives = 74/190 (38%), Gaps = 45/190 (23%)
Query: 844 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGYPKRQETFA 901
+L G F + ++G +G GKTTL+ +LAG + G + +S K Q+
Sbjct: 367 VLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVS--MKPQKIAP 424
Query: 902 RISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELT------- 954
+ G TV + LF ++ + F +V++ + +
Sbjct: 425 KFPG------------TVRQ--LFFK--KIRGQFL---NPQFQTDVVKPLRIDDIIDQEV 465
Query: 955 -SLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRN 1013
LSG G + +R+ I + L I +DEP++ LD+ I + +R
Sbjct: 466 QHLSG---------G----ELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRR 512
Query: 1014 IV-NTGRTIV 1022
+ + +T
Sbjct: 513 FILHNKKTAF 522
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 80.1 bits (198), Expect = 2e-15
Identities = 35/183 (19%), Positives = 74/183 (40%), Gaps = 21/183 (11%)
Query: 853 RPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEG---DIYISGYPKRQETFARISGYC 907
RPG + LVG +G GK+T + +LAG + G + I Y + E +
Sbjct: 101 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKML 160
Query: 908 EQND--------IHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGA 959
E + + + + + L ++ +E V+ +++++L ++
Sbjct: 161 EDDIKAIIKPQYVDNIPRAIKGPVQKVGELL---KLRMEKSPEDVKRYIKILQLENVLKR 217
Query: 960 LIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGR 1019
I LS + +R I + V + DEP+S LD + + +R+++ +
Sbjct: 218 -----DIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTK 272
Query: 1020 TIV 1022
++
Sbjct: 273 YVI 275
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 60.4 bits (147), Expect = 2e-09
Identities = 54/290 (18%), Positives = 92/290 (31%), Gaps = 74/290 (25%)
Query: 150 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPR 209
+L+ G S + +++G +GKTTL+ LAG L G+
Sbjct: 367 VLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPD---EGQDIPKL---------- 413
Query: 210 TSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMK 269
+ Q+ TVR+ +KI G +
Sbjct: 414 NVSMKPQKIAPKFPGTVRQLFF---------------------KKIRGQFLNPQ------ 446
Query: 270 SFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLF 329
++K L +D D V +SGG+ +R+ L PA +
Sbjct: 447 -----------FQTDVVKPLRIDDIIDQEVQH-----LSGGELQRVAIVLALGIPADIYL 490
Query: 330 MDEISNGLDSSTTYQIIKYLKHSTRALDGTTVI-----SLLQPAPEAYELFDDVILLSEG 384
+DE S LDS K ++ T I + A L D VI+
Sbjct: 491 IDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIM------ATYLADKVIVFEGI 544
Query: 385 QIV--YQGPRVSVLD----FFASMGFSC-PKRKNVADFLQEVTSKKDQEQ 427
+ S+L F ++ + + + ++ S+ D+EQ
Sbjct: 545 PSKNAHARAPESLLTGCNRFLKNLNVTFRRDPNSFRPRINKLDSQMDKEQ 594
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 55.8 bits (135), Expect = 6e-08
Identities = 54/273 (19%), Positives = 81/273 (29%), Gaps = 83/273 (30%)
Query: 141 YRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGH 200
Y N KL L RP ++ L+G GK+T L LAG+ +L G+
Sbjct: 87 YSANSFKLHRLP----TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNL---GRFDDPPE 139
Query: 201 GF----------------KEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYD 244
K + Q + ++ + G+ +
Sbjct: 140 WQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIP-RAIKGPVQKVGELLKL----- 193
Query: 245 MITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEML 304
R EK V+ +KIL L+ V +
Sbjct: 194 ------RMEKSP-----------------------EDVKRYIKILQLEN-----VLKRDI 219
Query: 305 KGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQI---IKYLKHSTRALDGTTV 361
+ +SGG+ +R G V A V DE S+ LD I+ L V
Sbjct: 220 EKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLA-----PTKYV 274
Query: 362 I------SLLQPAPEAYELFDDVILLSEGQIVY 388
I S+L L D V ++ VY
Sbjct: 275 ICVEHDLSVLD------YLSDFVCIIYGVPSVY 301
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 82.3 bits (204), Expect = 2e-17
Identities = 51/228 (22%), Positives = 89/228 (39%), Gaps = 48/228 (21%)
Query: 845 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGII---EGDIYISGYPKRQETFA 901
L NV+ G + G +G+GK+TL+ ++AG +I GD+ G K+
Sbjct: 23 LENVSLVINEGECLLVAGNTGSGKSTLLQIVAG-----LIEPTSGDVLYDGERKKGYEIR 77
Query: 902 RISGYCEQNDIHSP-----GLTVLESLLFSAW-LRLPSEIELETQRAFVEEVMELVELT- 954
R G Q P V + + F+ + V++ ME V L
Sbjct: 78 RNIGIAFQY----PEDQFFAERVFDEVAFAVKNFYPDRDPV---PL--VKKAMEFVGLDF 128
Query: 955 ---------SLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAA 1005
LSG +++R+ IA +V P I+ +DEP GLD
Sbjct: 129 DSFKDRVPFFLSGG-------------EKRRVAIASVIVHEPDILILDEPLVGLDREGKT 175
Query: 1006 IVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGP 1053
++R V G+T++ H + D ++ +++ G+ ++ G
Sbjct: 176 DLLRIVEKWKTLGKTVILISHDIE-TVINHVDRVVVLEK-GKKVFDGT 221
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 56.8 bits (138), Expect = 8e-09
Identities = 53/260 (20%), Positives = 94/260 (36%), Gaps = 62/260 (23%)
Query: 142 RGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHG 201
RG + L+++S +I L+ G SGK+TLL +AG + SG + Y+G
Sbjct: 14 RGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLI---EPTSGDVLYDGE- 69
Query: 202 FKEFVPP--RTSAYVSQQ-DWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGI 258
++ R Q + Q V + + FA + +
Sbjct: 70 -RKKGYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPD------RDPVPL------ 116
Query: 259 KPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLK----GISGGQKKR 314
V+ M+ +GLD D +SGG+K+R
Sbjct: 117 -----------------------VKKAMEFVGLDF-------DSFKDRVPFFLSGGEKRR 146
Query: 315 LT-TGELLVGPARVLFMDEISNGLDSSTTYQIIKYLK--HSTRALDGTTVISLLQPAPEA 371
+ ++ P +L +DE GLD +++ ++ + G TVI +
Sbjct: 147 VAIASVIVHEP-DILILDEPLVGLDREGKTDLLRIVEKWKT----LGKTVILISHDIETV 201
Query: 372 YELFDDVILLSEGQIVYQGP 391
D V++L +G+ V+ G
Sbjct: 202 INHVDRVVVLEKGKKVFDGT 221
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 82.4 bits (204), Expect = 3e-16
Identities = 45/189 (23%), Positives = 72/189 (38%), Gaps = 38/189 (20%)
Query: 845 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARIS 904
LV G + G + ++G +G GKTT +L G T EG + +I
Sbjct: 284 LVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEIT--ADEGSVTPEK---------QIL 332
Query: 905 GYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELT--------SL 956
Y Q + TV + +L S+ L T F EEV + + L L
Sbjct: 333 SYKPQRIFPNYDGTVQQ------YLENASKDALSTSSWFFEEVTKRLNLHRLLESNVNDL 386
Query: 957 SGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVN 1016
SG G + ++L IA L + +D+P+S LD IV + ++ +
Sbjct: 387 SG---------G----ELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTR 433
Query: 1017 TGRTIVCTI 1025
+ + I
Sbjct: 434 ERKAVTFII 442
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 69.7 bits (171), Expect = 3e-12
Identities = 39/181 (21%), Positives = 68/181 (37%), Gaps = 18/181 (9%)
Query: 853 RPGVLTALVGVSGAGKTTLMDVLAGR---------KTGGIIEGDIYISGYPKRQETFARI 903
+ + ++G +G GKTT++ +LAG G E G + F +
Sbjct: 23 KNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGK-EIYNYFKEL 81
Query: 904 SGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGL 963
E +H S + + +R +EV EL+ +T+L
Sbjct: 82 -YSNELKIVHKIQYVEYASKFLKGTVN--EILTKIDERGKKDEVKELLNMTNLWN----- 133
Query: 964 PGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVC 1023
N LS +RL +A L+ + D+P+S LD R + + +R ++ IV
Sbjct: 134 KDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVV 193
Query: 1024 T 1024
Sbjct: 194 D 194
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 68.9 bits (169), Expect = 5e-12
Identities = 58/324 (17%), Positives = 101/324 (31%), Gaps = 90/324 (27%)
Query: 150 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPR 209
L +G + + +LGP GKTT L G + G +T +
Sbjct: 283 QLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITAD---EGSVTPEK---------Q 330
Query: 210 TSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMK 269
+Y Q+ + + TV++ L+ +
Sbjct: 331 ILSYKPQRIFPNYDGTVQQYLE---------------------------------NASKD 357
Query: 270 SFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLF 329
+ + E + K L L ++ V D +SGG+ ++L L A +
Sbjct: 358 ALSTSSWF----FEEVTKRLNLHRLLESNVND-----LSGGELQKLYIAATLAKEADLYV 408
Query: 330 MDEISNGLDSSTTYQIIKYLKHSTRALDGTT-VIS--LLQPAPEAYELFDDVILLSEGQI 386
+D+ S+ LD Y + K +K TR T +I L + D +I+ +G+
Sbjct: 409 LDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDL----SIHDYIADRIIVF-KGEP 463
Query: 387 VYQGPRVSVLDFFASMGFSCPKRKNVADFLQEV------------------TSKKDQEQY 428
G S + M +FL+E+ S D+ Q
Sbjct: 464 EKAGLATSPVTLKTGM----------NEFLRELEVTFRRDAETGRPRVNKIGSYLDRVQK 513
Query: 429 WSNPYLPYRYISPGKFAEAFHSYH 452
Y + G H +H
Sbjct: 514 ERGDYYSMVLSTQGSIEGRHHHHH 537
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 57.7 bits (140), Expect = 1e-08
Identities = 32/206 (15%), Positives = 65/206 (31%), Gaps = 35/206 (16%)
Query: 157 IIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQ 216
+ + + +LG GKTT+L LAG + + K F Y
Sbjct: 21 TPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYF-- 78
Query: 217 QDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQ 276
++ E+ + + Q + ++ + + ++
Sbjct: 79 KELYSNELKIVH------KIQ----YVEYASKFLKGTVNEILTKIDERGK---------- 118
Query: 277 KTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNG 336
+ + ++L + + +SGG +RL L+ A V D+ S+
Sbjct: 119 -----KDEVKELLNMTNLWNKDANI-----LSGGGLQRLLVAASLLREADVYIFDQPSSY 168
Query: 337 LDSSTTYQIIKYLKHSTRALDGTTVI 362
LD + K ++ L VI
Sbjct: 169 LDVRERMNMAKAIR---ELLKNKYVI 191
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 81.6 bits (202), Expect = 5e-16
Identities = 46/189 (24%), Positives = 76/189 (40%), Gaps = 45/189 (23%)
Query: 845 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGYPKRQETFAR 902
L G R G + +VG +G GKTT + +LAG T G +E D+ ++ K Q
Sbjct: 372 LEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVA--YKPQ----Y 425
Query: 903 ISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELT-------- 954
I TV E L +L S + E+++ + +
Sbjct: 426 IK--------AEYEGTVYELLSKIDSSKLNS-------NFYKTELLKPLGIIDLYDRNVE 470
Query: 955 SLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNI 1014
LSG G + +R+ IA L+ + I +DEP++ LD V R +R++
Sbjct: 471 DLSG---------G----ELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHL 517
Query: 1015 V-NTGRTIV 1022
+ +T +
Sbjct: 518 MEKNEKTAL 526
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 73.1 bits (180), Expect = 2e-13
Identities = 44/185 (23%), Positives = 78/185 (42%), Gaps = 14/185 (7%)
Query: 844 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGR----KTGGIIEGDIYISGYP--KRQ 897
++ + G++ +VG +G GKTT + +LAG+ D I + + Q
Sbjct: 106 FVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQ 165
Query: 898 ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLS 957
F R+ E + P L +R ++ + EEV++ +EL ++
Sbjct: 166 NYFERLKN-GEIRPVVKPQYVDLLPKAVKGKVR--ELLKKVDEVGKFEEVVKELELENVL 222
Query: 958 GALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNT 1017
+ LS + +R+ IA L+ F DEP+S LD R V R +R + N
Sbjct: 223 DRELHQ-----LSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANE 277
Query: 1018 GRTIV 1022
G+ ++
Sbjct: 278 GKAVL 282
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 71.6 bits (176), Expect = 8e-13
Identities = 48/275 (17%), Positives = 90/275 (32%), Gaps = 71/275 (25%)
Query: 136 RQLRIYRGNRSK---LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVS 192
R+ + K L+ G IR + ++GP GKTT + LAG
Sbjct: 354 RETLVEYPRLVKDYGSFKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEE---PTE 410
Query: 193 GKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARR 252
GK+ ++ + P E TV E +++++
Sbjct: 411 GKVEWDLT--VAYKPQYIK--------AEYEGTVYE----------------LLSKIDSS 444
Query: 253 EKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQK 312
+ + ++K LG+ D V D +SGG+
Sbjct: 445 KLNSNFY----------------------KTELLKPLGIIDLYDRNVED-----LSGGEL 477
Query: 313 KRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTT-VIS----LLQP 367
+R+ L+ A + +DE S LD + + ++H + T V+ ++
Sbjct: 478 QRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMI-- 535
Query: 368 APEAYELFDDVILLSEGQIVYQGPRVSVLDFFASM 402
+ D +I+ EG+ G + + M
Sbjct: 536 ----DYVSDRLIVF-EGEPGRHGRALPPMGMREGM 565
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 61.9 bits (151), Expect = 7e-10
Identities = 43/240 (17%), Positives = 87/240 (36%), Gaps = 47/240 (19%)
Query: 127 IFNMTEALLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLG 186
I N+ E L G + + I++ + ++GP +GKTT + LAG+L
Sbjct: 86 IVNLPEQLDEDCVHRYGVNA---FVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLI 142
Query: 187 HHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRE-TLDFAGQCQGVGSKYDM 245
+L + + + Q ++ + + Q V D+
Sbjct: 143 PNL---CEDNDSWDNVIR--------AFRGNELQNYFERLKNGEIRPVVKPQYV----DL 187
Query: 246 ITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLK 305
+ + + + +K +++ E ++K L L+ D +
Sbjct: 188 LPKAVKGKVRELLKKVDEVGK---------------FEEVVKELELENVLDRELHQ---- 228
Query: 306 GISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQI---IKYLKHSTRALDGTTVI 362
+SGG+ +R+ L+ A F DE S+ LD ++ I+ L + +G V+
Sbjct: 229 -LSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLAN-----EGKAVL 282
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 77.2 bits (191), Expect = 1e-15
Identities = 46/198 (23%), Positives = 80/198 (40%), Gaps = 37/198 (18%)
Query: 847 NVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIE-GDIYISGYPKRQ------ 897
V+ + G +T ++G +G+GK+TL++V+ G + G + + I+ +
Sbjct: 25 GVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGI 84
Query: 898 -ETFARISGYCEQNDIHS-PGLTVLE-----------SLLFSAWLRLPSEIELETQRAFV 944
TF Q +TVLE S L S + + E E
Sbjct: 85 VRTF--------QT-PQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEM-VEKA 134
Query: 945 EEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAA 1004
+++E ++L+ L G LS Q K + I L+ NP ++ MDEP +G+ A
Sbjct: 135 FKILEFLKLSHLYDRKAG-----ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLA 189
Query: 1005 AIVMRTVRNIVNTGRTIV 1022
+ V + G T +
Sbjct: 190 HDIFNHVLELKAKGITFL 207
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 41.7 bits (99), Expect = 6e-04
Identities = 49/230 (21%), Positives = 82/230 (35%), Gaps = 57/230 (24%)
Query: 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP 207
LD +S + +TL++GP SGK+TL+ + G L G++ + P
Sbjct: 20 FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFL---KADEGRVYFENKDITNKEP 76
Query: 208 P--------RTSAYVSQQDWQVA----EMTVRETLDFAGQCQGVGSKYDMITELARREKI 255
RT +Q EMTV E L C G + + ++
Sbjct: 77 AELYHYGIVRT--------FQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEE 128
Query: 256 AGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRL 315
++ K+F + ++ L L D G+ +SGGQ K +
Sbjct: 129 EMVE---------KAFKI------------LEFLKLSHLYDRKAGE-----LSGGQMKLV 162
Query: 316 TTGELLVGPARVLFMDEISNGLDSSTTYQI---IKYLKHSTRALDGTTVI 362
G L+ +++ MDE G+ + I + LK G T +
Sbjct: 163 EIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKA-----KGITFL 207
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 79.6 bits (197), Expect = 2e-15
Identities = 43/189 (22%), Positives = 75/189 (39%), Gaps = 45/189 (23%)
Query: 845 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGYPKRQETFAR 902
L G + G + +VG +G GKTT + +LAG T G IE D+ ++ P+ +
Sbjct: 302 LEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVAYKPQYIKA--- 358
Query: 903 ISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELT-------- 954
TV E L S + + E+++ + +
Sbjct: 359 -----------DYEGTVYE--LLSK-----IDASKLNSNFYKTELLKPLGIIDLYDREVN 400
Query: 955 SLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNI 1014
LSG G + +R+ IA L+ + I +DEP++ LD V R +R++
Sbjct: 401 ELSG---------G----ELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHL 447
Query: 1015 V-NTGRTIV 1022
+ +T +
Sbjct: 448 MEKNEKTAL 456
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 72.7 bits (179), Expect = 3e-13
Identities = 44/186 (23%), Positives = 78/186 (41%), Gaps = 34/186 (18%)
Query: 853 RPGVLTALVGVSGAGKTTLMDVLAGR----KTGGIIEGDIYISGYPKR--QETFARISG- 905
+ G++ +VG +G GK+T + +LAG+ G D I + Q F ++
Sbjct: 45 KEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKNG 104
Query: 906 ---------YCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSL 956
Y + G V+E L + + +EEV++ +EL ++
Sbjct: 105 EIRPVVKPQYVDLIPKAVKG-KVIELL------------KKADETGKLEEVVKALELENV 151
Query: 957 SGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVN 1016
I LS + +R+ IA L+ N + F DEP+S LD R R +R +
Sbjct: 152 LEREIQH-----LSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSE 206
Query: 1017 TGRTIV 1022
G++++
Sbjct: 207 EGKSVL 212
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 63.1 bits (154), Expect = 3e-10
Identities = 56/297 (18%), Positives = 102/297 (34%), Gaps = 88/297 (29%)
Query: 150 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPR 209
L+ G I+ + ++GP GKTT + LAG GKI ++ + P
Sbjct: 301 RLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPT---EGKIEWDLT--VAYKPQY 355
Query: 210 TSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMK 269
A E TV E +++++ + + E
Sbjct: 356 IKA--------DYEGTVYE----------------LLSKIDASKLNSNFYKTE------- 384
Query: 270 SFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLF 329
++K LG+ D V + +SGG+ +R+ L+ A +
Sbjct: 385 ---------------LLKPLGIIDLYDREVNE-----LSGGELQRVAIAATLLRDADIYL 424
Query: 330 MDEISNGLDSSTTYQIIKYLKHSTRALDGTT-VIS----LLQPAPEAYELFDDVILLSEG 384
+DE S LD + + ++H + T V+ ++ + D +++ EG
Sbjct: 425 LDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMID------YVSDRLMVF-EG 477
Query: 385 QIVYQGPRVSVLD-------FFASMGFSCPK-------RKNVADFLQEVTSKKDQEQ 427
+ G + + F AS+G + + R N S KD+EQ
Sbjct: 478 EPGKYGRALPPMGMREGMNRFLASIGITFRRDPDTGRPRANKEG------SVKDREQ 528
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 48.8 bits (117), Expect = 8e-06
Identities = 38/218 (17%), Positives = 80/218 (36%), Gaps = 44/218 (20%)
Query: 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPP 208
+ +++ + ++GP +GK+T + LAG+L +L + + V
Sbjct: 35 AFVLYRLPVVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNL-------CGDNDSWDGV-- 85
Query: 209 RTSAYVSQQDWQVAEMTVRE-TLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIF 267
+ Q ++ + + Q V D+I + + + I +K ++
Sbjct: 86 --IRAFRGNELQNYFEKLKNGEIRPVVKPQYV----DLIPKAVKGKVIELLKKADETGK- 138
Query: 268 MKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARV 327
+E ++K L L+ + + +SGG+ +R+ L+ A
Sbjct: 139 --------------LEEVVKALELENVLEREIQH-----LSGGELQRVAIAAALLRNATF 179
Query: 328 LFMDEISNGLDSSTTYQI---IKYLKHSTRALDGTTVI 362
F DE S+ LD I+ L +G +V+
Sbjct: 180 YFFDEPSSYLDIRQRLNAARAIRRLSE-----EGKSVL 212
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 75.7 bits (187), Expect = 6e-15
Identities = 55/224 (24%), Positives = 96/224 (42%), Gaps = 35/224 (15%)
Query: 845 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGII---EGDIYISGYP--KRQET 899
L + + G +TA++G +G GK+TL GI+ G I P ++
Sbjct: 24 LKGINMNIKRGEVTAILGGNGVGKSTLFQNFN-----GILKPSSGRILFDNKPIDYSRKG 78
Query: 900 FARIS---GYCEQNDIHSP-----GLTVLESLLFSAW-LRLPSEIELETQRAFVEEVMEL 950
++ G Q+ P +V + + F A ++LP + E+ +R V+ ++
Sbjct: 79 IMKLRESIGIVFQD----PDNQLFSASVYQDVSFGAVNMKLPED-EIR-KR--VDNALKR 130
Query: 951 VELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRT 1010
+ L + LS Q+KR+ IA LV P ++ +DEPT+GLD + +M+
Sbjct: 131 TGIEHLKDK-----PTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKL 185
Query: 1011 VRNI-VNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGP 1053
+ + G TI+ H + D + MK G +I G
Sbjct: 186 LVEMQKELGITIIIATHDID-IVPLYCDNVFVMKE-GRVILQGN 227
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 63.0 bits (154), Expect = 8e-11
Identities = 56/280 (20%), Positives = 103/280 (36%), Gaps = 58/280 (20%)
Query: 151 LDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRT 210
L ++ I+ +T +LG GK+TL G L SG+I ++ +
Sbjct: 24 LKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGIL---KPSSGRILFDNKPIDY--SRKG 78
Query: 211 SAYVSQQ--------DWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDE 262
+ + D Q+ +V + + F + E+ +R
Sbjct: 79 IMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPED-----EIRKR---------- 123
Query: 263 DLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLT-TGELL 321
V+ +K G++ D +S GQKKR+ G L+
Sbjct: 124 -------------------VDNALKRTGIEHLKDKPTHC-----LSFGQKKRVAIAGVLV 159
Query: 322 VGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILL 381
+ P +VL +DE + GLD +I+K L + G T+I D+V ++
Sbjct: 160 MEP-KVLILDEPTAGLDPMGVSEIMKLLVEMQKE-LGITIIIATHDIDIVPLYCDNVFVM 217
Query: 382 SEGQIVYQGPRVSVL---DFFASMGFSCPKRKNVADFLQE 418
EG+++ QG V + + P+ ++ + L+E
Sbjct: 218 KEGRVILQGNPKEVFAEKEVIRKVNLRLPRIGHLMEILKE 257
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 71.4 bits (174), Expect = 1e-12
Identities = 104/695 (14%), Positives = 207/695 (29%), Gaps = 221/695 (31%)
Query: 6 ENVFSRTSSFRDEVEDEEALRWAALERLPTYARARRGIFKNVVGDVKEVDVSELAVQEQR 65
E+ F +D V+D + I ++ + +S+ AV
Sbjct: 26 EDAFVDNFDCKD-VQDMP-----------------KSILSK--EEIDHIIMSKDAVSGTL 65
Query: 66 LVLDRLVNAVEDDPERFFDRMRKRCEAVDLELP------KIEVRFQNLTVESFVHLGSRA 119
+ L++ E+ ++F + E + + K E R ++ ++ R
Sbjct: 66 RLFWTLLSKQEEMVQKFVE------EVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRL 119
Query: 120 LPTIPNFI-FNMT-EALLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTL 177
F +N++ +LR L L RP++ L+ G SGKT +
Sbjct: 120 YNDNQVFAKYNVSRLQPYLKLR------QALLEL-------RPAKNVLIDGVLGSGKTWV 166
Query: 178 LLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQ 237
L + ++ KI F W + + C
Sbjct: 167 ALDVCLSYKVQCKMDFKI------F----------------W----LNL-------KNCN 193
Query: 238 GVGSKYDMITELARR-EKIAGIKPDEDLDIFMKSFALGGQKTSLVVE--YIMKILGLD-- 292
+ +M+ +L + + + D +I ++ ++ + L+ Y +L L
Sbjct: 194 SPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV 253
Query: 293 -----------TC-----------ADTLVGDEMLKGISGGQKKRLTTGELL--------- 321
+C D L LT E+
Sbjct: 254 QNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDC 313
Query: 322 -----------VGPARV-LFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAP 369
P R+ + + I +GL + ++ + K T ++ + +++L+PA
Sbjct: 314 RPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKL-TTIIESS--LNVLEPA- 369
Query: 370 EAYELFDDVILLSEG-QIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVTSKKDQEQY 428
E ++FD + + I P +L S+ + + +V + ++ E+
Sbjct: 370 EYRKMFDRLSVFPPSAHI----PT-ILL----SLIWFDVIKSDVMVVVNKLHKYSLVEKQ 420
Query: 429 WSNPYLPYRYISPGKFAEAFHSYHTGKNLSEELAVPFDRRFN-HPAALSTSKYGEKRSEL 487
S ++ EL V + + H + + Y +
Sbjct: 421 PK----ESTI-----------SIP---SIYLELKVKLENEYALHRSIV--DHY-----NI 455
Query: 488 LKTSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHH-KTIDDGGLYLGALYF 546
KT + L+ + Y + I HH K I+ F
Sbjct: 456 PKTFDSDDLIPPYLDQ--YFYSHI-----------------GHHLKNIEHPERMTL---F 493
Query: 547 SMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIPTSLIESGFWVAVT 606
MV + F F E K+ +H +W L+ L
Sbjct: 494 RMVFLDFR-FLE-----QKI----RHDS----TAW--NASGSILNTLQQLK--------F 529
Query: 607 Y--YVIGYDPNVVRFSRQLLLYF-FLHQMSIGLFR 638
Y Y+ DP ++ R + FL ++ L
Sbjct: 530 YKPYICDNDP---KYERLVNAILDFLPKIEENLIC 561
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 58.3 bits (140), Expect = 1e-08
Identities = 88/700 (12%), Positives = 171/700 (24%), Gaps = 205/700 (29%)
Query: 330 MDEISNGLDSSTTYQ-IIK-YLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIV 387
MD + Y+ I+ + D V + + E D I+
Sbjct: 7 MDFETGEHQYQ--YKDILSVFEDAFVDNFDCKDVQDMPKSILSKEE-IDH--------II 55
Query: 388 YQGPRVSVLDFFASMGFSCPKRKN---VADFLQEVTSKKDQEQY-WSNPYLPYRYISPGK 443
VS F K V F++EV + Y + + P
Sbjct: 56 MSKDAVSGTLRL----FWTLLSKQEEMVQKFVEEV----LRINYKFLMSPIKTEQRQPSM 107
Query: 444 FAEAFHSYHTGKNLSEELAVPFDRRFNHPAALSTSKYGEKRSELLKTSFNWQLLLMKRNS 503
+ DR +N + KY R + LL ++
Sbjct: 108 MTRMYIEQR-------------DRLYNDNQVFA--KYNVSRLQPYLKLRQA-LLELRPAK 151
Query: 504 FIYVF------KFIQLLIVA-------LITMT--VFFRTTMHHKTIDDGGLYLGALYFSM 548
+ + K + + M +F+ + + + L L + +
Sbjct: 152 NVLIDGVLGSGK--TWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQI 209
Query: 549 VIILFNGFTEVSMLVAKLPVLY---KHRDLHFYPSWVYTIPSWALSIPTSLIESGFWVAV 605
+T S + + + + S Y L+
Sbjct: 210 D----PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY---------ENCLL-------- 248
Query: 606 TYYVIG--YDPNVVR-F---SRQLLLYFFLHQMSIGLFRVIGSLGRNMIVAN----TFGS 655
V+ + F + LL + + + I + T
Sbjct: 249 ---VLLNVQNAKAWNAFNLSCKILLT-----TRFKQVTDFLSAATTTHISLDHHSMTLTP 300
Query: 656 FAMLVVMA--LGGFIISRDSIP----KWWIWGFWVSPLMYAQNAASVNEFLGHSWD--KK 707
+ ++ L +P +P + A S+ + L WD K
Sbjct: 301 DEVKSLLLKYLD---CRPQDLPREVLT-------TNPRRLSIIAESIRDGLAT-WDNWKH 349
Query: 708 AGNSNFS---------LGEAILRQR----SLFPESYW--------YWIG---------VG 737
+ L A R+ S+FP S W V
Sbjct: 350 VNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVN 409
Query: 738 AMLGYTLLF--NALFTFFLSYLNPLGKQQAVVSKKELQERDRRRKGENVVIE----LREY 791
+ Y+L+ T + + + K E R +++ + +
Sbjct: 410 KLHKYSLVEKQPKESTISIPSI------YLELKVKLENEYALHRS----IVDHYNIPKTF 459
Query: 792 LQRSSSLNG--KYF--------KQKGMVLPFQPLSMAFGNINYFVDVPVELKQEGVLEDR 841
+YF K M F + F++ +++ + +
Sbjct: 460 DSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFR-FLEQ--KIRHDSTAWNA 516
Query: 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFA 901
++N TL + + I + D F
Sbjct: 517 SGSILN----------------------TLQQLKFYKPY--ICDNDPKYERLVNAILDFL 552
Query: 902 RISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQR 941
E+N I S +L L + + E + QR
Sbjct: 553 P---KIEENLICSKYTDLLRIALMAEDEAIFEEAHKQVQR 589
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 57.6 bits (138), Expect = 2e-08
Identities = 64/386 (16%), Positives = 128/386 (33%), Gaps = 98/386 (25%)
Query: 764 QAVVSKKE----LQERDR-----------RRKGENVVIELREYLQRSSSLNGKYFKQKGM 808
++++SK+E + +D K E +V +++++ +N K+
Sbjct: 43 KSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMV---QKFVEEVLRINYKFLMSPIK 99
Query: 809 VLPFQPLSMAFGNINYFVD----VPVELKQEGVLEDRLQLLVNVTGAF---RPGVLTALV 861
QP SM D + V RLQ + + A RP +
Sbjct: 100 TEQRQP-SMMTRMYIEQRDRLYNDNQVFAKYNV--SRLQPYLKLRQALLELRPAKNVLID 156
Query: 862 GVSGAGKTTL-MDVLAGRKTGGIIEGDIY-IS-GYPKR--------QETFARISG-YCEQ 909
GV G+GKT + +DV K ++ I+ ++ Q+ +I + +
Sbjct: 157 GVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSR 216
Query: 910 NDIHSPGLTVLESL------LFSAWLRLPSEIEL------ETQRAFVEEVMELVELTSLS 957
+D S + S+ L + + L + AF L+ T+
Sbjct: 217 SDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILL--TTRF 274
Query: 958 GALIGLPGINGLSTEQRKRLTI-----------AVELVANPSIVFMDEPTSGLDARAA-- 1004
+ + LS +++ L+ ++D L
Sbjct: 275 KQV-----TDFLSAATTTHISLDHHSMTLTPDEVKSLLLK----YLDCRPQDLPREVLTT 325
Query: 1005 -----AIVMRTVRNIVNTG---RTIVC----TIHQPSIDIFES------FDEL-LFMKRG 1045
+I+ ++R+ + T + + C TI + S+++ E FD L +F
Sbjct: 326 NPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPP-- 383
Query: 1046 GELIYAGPLGSKSCELIKYFEVESFM 1071
I L ++IK +V +
Sbjct: 384 SAHIPTILLSLIWFDVIKS-DVMVVV 408
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 55.2 bits (132), Expect = 1e-07
Identities = 72/462 (15%), Positives = 130/462 (28%), Gaps = 134/462 (29%)
Query: 682 FWVSPLMYAQNAASVNEFLGHSWDKKAGNSNFSLGEAI---LRQRSLFPESYWYWIGVGA 738
FW + ++ V +F+ N F L I RQ S+ Y
Sbjct: 68 FW---TLLSKQEEMVQKFVEEVLRI---NYKF-LMSPIKTEQRQPSMMTRMY-------- 112
Query: 739 MLGYTLLFNALFTFFLSYLNPLGKQQAVVSKKELQERDRRRKGENVVIELREYLQRSSSL 798
+ + L V +K + R + ++LR+ L
Sbjct: 113 ---------------IEQRDRLYNDNQVFAKYNVS---RLQP----YLKLRQALLELRP- 149
Query: 799 NGKYFKQKGM------VL------PFQPLSMAFGNINYFVDVPVELKQEGVLEDRLQLLV 846
K G+ + ++ I +++++ E VLE +LL
Sbjct: 150 -AKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKI-FWLNLKNCNSPETVLEMLQKLLY 207
Query: 847 NVTGAF--RPGVLTALVGVSGAGKTTLMDVLAGR--KTGGIIEGDIYISGYPKRQETF-- 900
+ + R + + + + L +L + + ++ ++ K F
Sbjct: 208 QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQ---NAKAWNAFNL 264
Query: 901 --------------ARISGYCEQN---DIHSPGLTVLESL-LFSAWL-----RLPSEIEL 937
+S + D HS LT E L +L LP E
Sbjct: 265 SCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPRE--- 321
Query: 938 ETQRAFVEEVMELVELTSLSGALI--GLPGINGLSTEQRKRLTIAVEL---VANPSI--- 989
V S+ I GL + +LT +E V P+
Sbjct: 322 ------VLTTNPRR--LSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRK 373
Query: 990 ------VFMDE---PTSGLDARAAAIVMRTVRNIVNT----------GRTIVCTIHQPSI 1030
VF PT L ++ V +VN + +I +
Sbjct: 374 MFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYL 433
Query: 1031 DIFESFDELLFMKRGGELI--YAGPLGSKSCELIK-----YF 1065
++ + + R ++ Y P S +LI YF
Sbjct: 434 ELKVKLENEYALHR--SIVDHYNIPKTFDSDDLIPPYLDQYF 473
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 49.5 bits (117), Expect = 7e-06
Identities = 74/553 (13%), Positives = 150/553 (27%), Gaps = 158/553 (28%)
Query: 187 HHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSK--YD 244
HH + + + + +K+ + V + + V ++ D + + SK D
Sbjct: 3 HHHHMDFETGEHQYQYKDILS------VFEDAF-VDNFDCKDVQDMP---KSILSKEEID 52
Query: 245 MI----TELARREKIAGI---KPDEDLDIFMKSFALGGQK------TSLVVEYIMKILGL 291
I ++ ++ K +E + F++ L + + + E +
Sbjct: 53 HIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEE-VL--RINYKFLMSPIKTEQRQPSMMT 109
Query: 292 D---TCADTLVGD-------------------EMLKGIS----------GGQKKRLTTGE 319
D L D + L + G K +
Sbjct: 110 RMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALD 169
Query: 320 LLVGPARVLFMDE----ISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELF 375
+ + MD ++ +S +++ L+ +D + +
Sbjct: 170 VCLSYKVQCKMDFKIFWLNLKNCNSPE-TVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIH 228
Query: 376 DDVILLSEGQIVYQGPRV-SVLD------FFASMGFSCP-----KRKNVADFLQEVTSKK 423
L VL + + SC + K V DFL T+
Sbjct: 229 SIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTH 288
Query: 424 DQEQYWSNPYLPYRYISPGKFAEAFHSY--HTGKNLSEELAVPFDRRFNHPAALSTSKYG 481
+ S +P + Y ++L E+ +P LS
Sbjct: 289 ISLDHHSMTL------TPDEVKSLLLKYLDCRPQDLPREVLT------TNPRRLSI--IA 334
Query: 482 EKRSELLKTSFNW-QLLLMKRNSFIYVF-----------KFIQLLIV---ALITMTVF-- 524
E + L T NW + K + I F +L + A I +
Sbjct: 335 ESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSL 394
Query: 525 ------------FRTTMHHKTI-----DDGGLYLGALYFSMVIILFNGFTEVSMLVAKLP 567
+H ++ + + + ++Y E+ + +
Sbjct: 395 IWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYL-----------ELKVKLENEY 443
Query: 568 VLYKHRDL--HFYPSWVYTIPSWALSIPTSLIESGFWVAVTYYVIGY-------DPNVVR 618
L HR + H+ + S L P ++ Y IG+ +
Sbjct: 444 AL--HRSIVDHYNIPKTF--DSDDLIPPY---LDQYF----YSHIGHHLKNIEHPERMTL 492
Query: 619 FSRQLLLYFFLHQ 631
F L + FL Q
Sbjct: 493 FRMVFLDFRFLEQ 505
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 68.5 bits (167), Expect = 9e-12
Identities = 36/164 (21%), Positives = 67/164 (40%), Gaps = 28/164 (17%)
Query: 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFAR 902
LL + + G +G GK+TLM +A + G P ++E R
Sbjct: 449 ILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQVDGF----------PTQEE--CR 496
Query: 903 ISGYCEQNDIHSPG-LTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALI 961
Y E + + +VL+ + S + + + F +E++ + +++LSG
Sbjct: 497 T-VYVEHDIDGTHSDTSVLDFVFESGVGTKEAIKDKLIEFGFTDEMIAM-PISALSG--- 551
Query: 962 GLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAA 1005
G + +L +A ++ N I+ +DEPT+ LD A
Sbjct: 552 G----------WKMKLALARAVLRNADILLLDEPTNHLDTVNVA 585
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 51.6 bits (123), Expect = 1e-06
Identities = 48/317 (15%), Positives = 98/317 (30%), Gaps = 67/317 (21%)
Query: 45 KNVVGDVKEVDVSELAVQEQRLVLDRLVNAVEDDPERFFDRMRKRCEAVDLELPKIEVRF 104
+ V E+ E ++V++ + D + + + +
Sbjct: 344 STTLQVVNELLKDETVAPRFKIVVEYIAAIGADLIDERIIDQQAWFTHITPYMTIFLHEK 403
Query: 105 Q-NLTVESFVHLGSRALPTIPNFIFNMTEALLRQLRIYRGNRSKLTILDDLSGIIRPSRL 163
+ ++ F +P PNF E + +L+ ++ +R
Sbjct: 404 KAKDILDEFRKRAVDNIPVGPNFDDEEDEGEDLCNCEFSLAYGAKILLNKTQLRLKRARR 463
Query: 164 TLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPR--TSAYVSQQ-DWQ 220
+ GP GK+TL+ A+A QV G F + YV D
Sbjct: 464 YGICGPNGCGKSTLMRAIANG-----QVDG-----------FPTQEECRTVYVEHDIDGT 507
Query: 221 VAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGI-KPDEDLDIFMKSFALGGQKTS 279
++ +V + + + + T+ A ++K+ DE + + + +
Sbjct: 508 HSDTSVLDFVF----------ESGVGTKEAIKDKLIEFGFTDEMIAMPISAL-------- 549
Query: 280 LVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDS 339
SGG K +L ++ A +L +DE +N LD+
Sbjct: 550 ----------------------------SGGWKMKLALARAVLRNADILLLDEPTNHLDT 581
Query: 340 STTYQIIKYLKHSTRAL 356
++ YL
Sbjct: 582 VNVAWLVNYLNTCGITS 598
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 51.2 bits (122), Expect = 2e-06
Identities = 45/267 (16%), Positives = 80/267 (29%), Gaps = 63/267 (23%)
Query: 150 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRL---------GHHLQVSGKITYNGH 200
+ D++ S ++GP +GK+TL+ L G L + +++ H
Sbjct: 688 QITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHENCRIA---YIKQH 744
Query: 201 GFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDM------------ITE 248
F W+ RET+D A + M I
Sbjct: 745 AFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAG 804
Query: 249 LARREKIAGIKPDEDLDI---------------------------FMKSFA--------- 272
+ R K E + ++S +
Sbjct: 805 IHSRRKFKNTYEYECSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMK 864
Query: 273 ---LGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLF 329
GQ L + I + + +V ++G+SGGQK +L ++
Sbjct: 865 EALASGQFRPLTRKEIEEHCSMLGLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIV 924
Query: 330 MDEISNGLDSSTTYQIIKYLKHSTRAL 356
+DE +N LD + + K LK +
Sbjct: 925 LDEPTNYLDRDSLGALSKALKEFEGGV 951
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 64.8 bits (159), Expect = 9e-12
Identities = 50/198 (25%), Positives = 89/198 (44%), Gaps = 21/198 (10%)
Query: 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGG--IIEGDIYISGYPKRQ 897
++L ++ + + G +++G SG+GK+TL+ +L T G +EG + +++
Sbjct: 17 YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEG-KEVDYTNEKE 75
Query: 898 ETFAR---ISGYCEQ--NDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVE 952
+ R + G+ Q I P LT LE+++ +P + ++ E L+
Sbjct: 76 LSLLRNRKL-GFVFQFHYLI--PELTALENVI------VPMLKMGKPKKEAKERGEYLLS 126
Query: 953 LTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVR 1012
L L P LS +++R+ IA L P ++F DEPT LD+ VM
Sbjct: 127 ELGLGDKLSRKP--YELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFL 184
Query: 1013 NIVNTGRTIVCTIHQPSI 1030
I G +IV H+ +
Sbjct: 185 KINEGGTSIVMVTHEREL 202
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 64.9 bits (159), Expect = 1e-11
Identities = 65/301 (21%), Positives = 105/301 (34%), Gaps = 94/301 (31%)
Query: 144 NRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFK 203
RS L+ ++ I L ++G GK++LL AL + +V G + G
Sbjct: 14 ARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMD---KVEGHVAIKG---- 66
Query: 204 EFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKP--- 260
+ AYV QQ W + ++RE + F G + + + I+
Sbjct: 67 ------SVAYVPQQAW-IQNDSLRENILF-------GCQLEE----PYYRSV--IQACAL 106
Query: 261 DEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGI--SGGQKKRLTTG 318
DL+I G + T +G+ KG+ SGGQK+R
Sbjct: 107 LPDLEILP-----SGDR-------------------TEIGE---KGVNLSGGQKQR---- 135
Query: 319 ELLVGPAR--------VLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISL----LQ 366
V AR LF D +S +D+ I + + L T I L +
Sbjct: 136 ---VSLARAVYSNADIYLFDDPLS-AVDAHVGKHIFENVIGPKGMLKNKTRI-LVTHSMS 190
Query: 367 PAPEAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVTSKKDQE 426
P+ D +I++S G+I G +L + A+FL+ S
Sbjct: 191 YLPQV----DVIIVMSGGKISEMGSYQELLA----------RDGAFAEFLRTYASHHHHH 236
Query: 427 Q 427
Sbjct: 237 H 237
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 53.7 bits (130), Expect = 6e-08
Identities = 51/215 (23%), Positives = 87/215 (40%), Gaps = 45/215 (20%)
Query: 845 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGYPKRQETFAR 902
L +T + G L A+VG G GK++L+ L K EG + I G
Sbjct: 21 LNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKV----EGHVAIKG---------S 67
Query: 903 ISGYCEQND-IHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVME---LVE-LTSLS 957
++ Y Q I + ++ E++LF + + + V++ L+ L L
Sbjct: 68 VA-YVPQQAWIQN--DSLRENILFG----------CQLEEPYYRSVIQACALLPDLEILP 114
Query: 958 GA---LIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNI 1014
IG G+N LS Q++R+++A + +N I D+P S +DA + V I
Sbjct: 115 SGDRTEIGEKGVN-LSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENV--I 171
Query: 1015 VNTG----RTIVCTIHQPSIDIFESFDELLFMKRG 1045
G +T + H + D ++ M G
Sbjct: 172 GPKGMLKNKTRILVTHS--MSYLPQVDVIIVMSGG 204
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 64.0 bits (157), Expect = 3e-11
Identities = 54/211 (25%), Positives = 85/211 (40%), Gaps = 50/211 (23%)
Query: 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLM-------DVLAGRKTGGIIEGDIYIS 891
D +L N+ + + G + +VG SG+GK+TL G+ + I
Sbjct: 19 PDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ---------VLID 69
Query: 892 GYPKRQETFA---RISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVM 948
G+ R G Q +++L + + I L VE+V+
Sbjct: 70 GHDLALADPNWLRRQVGVVLQ-----------DNVLLNRSII--DNISLANPGMSVEKVI 116
Query: 949 ELVELTSLSGA-------------LIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEP 995
+L +GA ++G G LS QR+R+ IA LV NP I+ DE
Sbjct: 117 YAAKL---AGAHDFISELREGYNTIVGEQGAG-LSGGQRQRIAIARALVNNPKILIFDEA 172
Query: 996 TSGLDARAAAIVMRTVRNIVNTGRTIVCTIH 1026
TS LD + ++MR + I GRT++ H
Sbjct: 173 TSALDYESEHVIMRNMHKIC-KGRTVIIIAH 202
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 62.2 bits (152), Expect = 9e-11
Identities = 55/207 (26%), Positives = 98/207 (47%), Gaps = 28/207 (13%)
Query: 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGG--IIEGDIYISGYP 894
E+ + L NV + G +++G SG+GK+T+++++ + T G I+ I +
Sbjct: 15 EEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDN-IKTNDLD 73
Query: 895 KRQETFAR---ISGYCEQ--NDIHSPGLTVLES----LLFSAWLRLPSEIELETQRAFVE 945
+ T R I G+ Q N I P LT LE+ L+F + E +R +
Sbjct: 74 DDELTKIRRDKI-GFVFQQFNLI--PLLTALENVELPLIFKYRGAMSGE-----ERR--K 123
Query: 946 EVMELVELTSLSGALIG-LPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAA 1004
+E +++ L P N LS Q++R+ IA L NP I+ D+PT LD++
Sbjct: 124 RALECLKMAELEERFANHKP--NQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTG 181
Query: 1005 AIVMRTVRNI-VNTGRTIVCTIHQPSI 1030
+M+ ++ + G+T+V H ++
Sbjct: 182 EKIMQLLKKLNEEDGKTVVVVTHDINV 208
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 63.0 bits (154), Expect = 1e-10
Identities = 54/229 (23%), Positives = 92/229 (40%), Gaps = 48/229 (20%)
Query: 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLM-------DVLAGRKTGGIIEGDIYIS 891
D + L +V+ PG ALVG SGAGK+T++ D+ +G I I
Sbjct: 64 ADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGC---------IRID 114
Query: 892 GYPKRQETFA---RISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVM 948
G Q T A G Q +++LF+ + I A +EV
Sbjct: 115 GQDISQVTQASLRSHIGVVPQ-----------DTVLFNDTIA--DNIRYGRVTAGNDEVE 161
Query: 949 ELVELTSLSGALIGLPGINGLSTE-----------QRKRLTIAVELVANPSIVFMDEPTS 997
+ + A++ P G T+ +++R+ IA ++ P I+ +DE TS
Sbjct: 162 AAAQAAGIHDAIMAFP--EGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATS 219
Query: 998 GLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGG 1046
LD + ++ + RT + H+ S + + D++L +K G
Sbjct: 220 ALDTSNERAIQASLAKVC-ANRTTIVVAHRLST-VVNA-DQILVIKDGC 265
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 41.8 bits (99), Expect = 7e-04
Identities = 26/100 (26%), Positives = 49/100 (49%), Gaps = 15/100 (15%)
Query: 296 DTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRA 355
T VG+ LK +SGG+K+R+ ++ ++ +DE ++ LD+S I L
Sbjct: 181 RTQVGERGLK-LSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCA- 238
Query: 356 LDGTTVI-----SLLQPAPEAYELFDDVILLSEGQIVYQG 390
+ TT++ S + A D ++++ +G IV +G
Sbjct: 239 -NRTTIVVAHRLSTVVNA-------DQILVIKDGCIVERG 270
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 61.4 bits (150), Expect = 2e-10
Identities = 57/259 (22%), Positives = 93/259 (35%), Gaps = 88/259 (33%)
Query: 150 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPR 209
+L D++ I +L + G +GKT+LL+ + G L GKI ++G
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE---PSEGKIKHSG---------- 69
Query: 210 TSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKP---DEDLDI 266
++ SQ W + T++E + F G YD R + IK +ED+
Sbjct: 70 RISFCSQFSW-IMPGTIKENIIF-------GVSYDE----YRYRSV--IKACQLEEDISK 115
Query: 267 FMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGI--SGGQKKRLTTGELLVGP 324
F ++G+ GI SGGQ+ R +
Sbjct: 116 FA-----EKDN-------------------IVLGE---GGITLSGGQRAR-------ISL 141
Query: 325 AR--------VLFMDEISNGLDSSTTYQIIK-----YLKHSTRALDGTTVISLLQPAPEA 371
AR L LD T +I + + + TR L V S ++ +A
Sbjct: 142 ARAVYKDADLYLLDSPFG-YLDVLTEKEIFESCVCKLMANKTRIL----VTSKMEHLKKA 196
Query: 372 YELFDDVILLSEGQIVYQG 390
D +++L EG + G
Sbjct: 197 ----DKILILHEGSSYFYG 211
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 51.0 bits (123), Expect = 4e-07
Identities = 46/211 (21%), Positives = 87/211 (41%), Gaps = 39/211 (18%)
Query: 845 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGYPKRQETFAR 902
L ++ G L A+ G +GAGKT+L+ ++ G + EG I SG R
Sbjct: 24 LKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS----EGKIKHSG---------R 70
Query: 903 ISGYCEQND-IHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVME---LVE-LTSLS 957
IS +C Q I T+ E+++F + V++ L E ++ +
Sbjct: 71 IS-FCSQFSWIMP--GTIKENIIFG----------VSYDEYRYRSVIKACQLEEDISKFA 117
Query: 958 GA---LIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNI 1014
++G GI LS QR R+++A + + + +D P LD + +
Sbjct: 118 EKDNIVLGEGGIT-LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCK 176
Query: 1015 VNTGRTIVCTIHQPSIDIFESFDELLFMKRG 1045
+ +T + + ++ + D++L + G
Sbjct: 177 LMANKTRILVTSK--MEHLKKADKILILHEG 205
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 62.8 bits (153), Expect = 2e-10
Identities = 40/202 (19%), Positives = 74/202 (36%), Gaps = 47/202 (23%)
Query: 845 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIE--GDIYISGYPKRQETFAR 902
L N++ + PG L+G +G+GK+TL+ ++ G+I I G
Sbjct: 37 LENISFSISPGQRVGLLGRTGSGKSTLLSAFLR-----LLNTEGEIQIDGV--------- 82
Query: 903 ISGYCEQNDIHSPGLTVL---------ESLLFSAWLRL---PSEIELETQRAFVEEVMEL 950
S L + +FS R P+ + + + +V +
Sbjct: 83 --------SWDSITLEQWRKAFGVIPQKVFIFSGTFRKNLDPNAAHSDQE---IWKVADE 131
Query: 951 VEL----TSLSGALIGLPGING--LSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAA 1004
V L G L + G LS ++ + +A +++ I+ +DEP++ LD
Sbjct: 132 VGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTY 191
Query: 1005 AIVMRTVRNIVNTGRTIVCTIH 1026
I+ RT++ V
Sbjct: 192 QIIRRTLKQ--AFADCTVILCE 211
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 61.6 bits (150), Expect = 3e-10
Identities = 56/260 (21%), Positives = 93/260 (35%), Gaps = 89/260 (34%)
Query: 150 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPR 209
+L D++ I +L + G +GKT+LL+ + G L GKI ++G
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE---PSEGKIKHSG---------- 99
Query: 210 TSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKP---DEDLDI 266
++ SQ W + T++E + +G YD R + IK +ED+
Sbjct: 100 RISFCSQNSW-IMPGTIKENI--------IGVSYDE----YRYRSV--IKACQLEEDISK 144
Query: 267 FMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGI--SGGQKKRLTTGELLVGP 324
F ++G+ GI SGGQ+ R +
Sbjct: 145 FA-----EKDN-------------------IVLGE---GGITLSGGQRAR-------ISL 170
Query: 325 AR--------VLFMDEISNGLDSSTTYQIIK-----YLKHSTRALDGTTVISLLQPAPEA 371
AR L LD T +I + + + TR L V S ++ +A
Sbjct: 171 ARAVYKDADLYLLDSPFG-YLDVLTEKEIFESCVCKLMANKTRIL----VTSKMEHLKKA 225
Query: 372 YELFDDVILLSEGQIVYQGP 391
D +++L EG + G
Sbjct: 226 ----DKILILHEGSSYFYGT 241
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 52.7 bits (127), Expect = 2e-07
Identities = 46/211 (21%), Positives = 88/211 (41%), Gaps = 40/211 (18%)
Query: 845 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGYPKRQETFAR 902
L ++ G L A+ G +GAGKT+L+ ++ G + EG I SG R
Sbjct: 54 LKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS----EGKIKHSG---------R 100
Query: 903 ISGYCEQND-IHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVME---LVE-LTSLS 957
IS +C QN I T+ E+++ ++ V++ L E ++ +
Sbjct: 101 IS-FCSQNSWIMP--GTIKENIIGVSY-----------DEYRYRSVIKACQLEEDISKFA 146
Query: 958 GA---LIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNI 1014
++G GI LS QR R+++A + + + +D P LD + +
Sbjct: 147 EKDNIVLGEGGIT-LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCK 205
Query: 1015 VNTGRTIVCTIHQPSIDIFESFDELLFMKRG 1045
+ +T + + ++ + D++L + G
Sbjct: 206 LMANKTRILVTSK--MEHLKKADKILILHEG 234
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 59.5 bits (145), Expect = 9e-10
Identities = 42/170 (24%), Positives = 74/170 (43%), Gaps = 23/170 (13%)
Query: 844 LLVNVT---GAFRPGV-------LTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGY 893
L V G FR V L+G +GAGK+ ++++AG G++ ++G
Sbjct: 3 LKVRAEKRLGNFRLNVDFEMGRDYCVLLGPTGAGKSVFLELIAGIVK--PDRGEVRLNGA 60
Query: 894 P-KRQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVE 952
R G+ Q+ P L+V ++ + LR +E + + V E+ E +
Sbjct: 61 DITPLPPERRGIGFVPQDYALFPHLSVYRNIAYG--LRNVERVERDRR---VREMAEKLG 115
Query: 953 LTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDAR 1002
+ L LS +R+R+ +A LV P ++ +DEP S +D +
Sbjct: 116 IAHLLDRKP-----ARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLK 160
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 58.7 bits (143), Expect = 2e-09
Identities = 49/197 (24%), Positives = 80/197 (40%), Gaps = 43/197 (21%)
Query: 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLM-------DVLAGRKTGGIIEGDIYISGYPK 895
+ L ++ G ALVG +G+GK+T+ D EGDI I G
Sbjct: 34 RTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA----------EGDIKIGGKNV 83
Query: 896 RQETFARISGYCEQNDIHSP-GLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELT 954
+ +N I S G+ +++LF+ ++ I A EEV++ +
Sbjct: 84 NKYN---------RNSIRSIIGIVPQDTILFNETIK--YNILYGKLDATDEEVIKATKSA 132
Query: 955 SLSGALIGLPGINGLSTE-----------QRKRLTIAVELVANPSIVFMDEPTSGLDARA 1003
L + LP T +R+R+ IA L+ +P IV DE TS LD++
Sbjct: 133 QLYDFIEALP--KKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKT 190
Query: 1004 AAIVMRTVRNIVNTGRT 1020
+ + V ++ RT
Sbjct: 191 EYLFQKAVEDLRK-NRT 206
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 41.8 bits (99), Expect = 6e-04
Identities = 29/100 (29%), Positives = 56/100 (56%), Gaps = 15/100 (15%)
Query: 296 DTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRA 355
DT+VG++ +K +SGG+++R+ L+ +++ DE ++ LDS T Y K ++ +
Sbjct: 146 DTIVGNKGMK-LSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRK- 203
Query: 356 LDGTTVI-----SLLQPAPEAYELFDDVILLSEGQIVYQG 390
+ T +I S + A + +ILL++G+IV +G
Sbjct: 204 -NRTLIIIAHRLSTISSA-------ESIILLNKGKIVEKG 235
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 58.6 bits (143), Expect = 2e-09
Identities = 43/192 (22%), Positives = 79/192 (41%), Gaps = 48/192 (25%)
Query: 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLM-------DVLAGRKTGGIIEGDIYIS 891
+D Q+L +++ +P + A G SG GK+T+ AG I I
Sbjct: 12 DDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGE---------ITID 62
Query: 892 GYPKRQETFA----RISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIEL-ETQRAFVEE 946
G P + +I G+ Q +S + + +R + E+
Sbjct: 63 GQPIDNISLENWRSQI-GFVSQ-----------DSAIMAGTIR--ENLTYGLEGDYTDED 108
Query: 947 VMELVELTSLSGALIGLPGINGLSTE-----------QRKRLTIAVELVANPSIVFMDEP 995
+ ++++L + +P + L+TE QR+RL IA + NP I+ +DE
Sbjct: 109 LWQVLDLAFARSFVENMP--DQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEA 166
Query: 996 TSGLDARAAAIV 1007
T+ LD+ + ++V
Sbjct: 167 TASLDSESESMV 178
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 60.4 bits (147), Expect = 3e-09
Identities = 54/208 (25%), Positives = 85/208 (40%), Gaps = 46/208 (22%)
Query: 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIE-------GDIYISGYPK 895
Q+L + + G ALVG SG GK+T + +++ G + I G
Sbjct: 404 QILKGLNLKVKSGQTVALVGNSGCGKSTTV---------QLMQRLYDPLDGMVSIDGQDI 454
Query: 896 RQETF----ARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSE-IELETQRAFVEEVMEL 950
R I G Q E +LF+ + E I + ++E+ +
Sbjct: 455 RTINVRYLREII-GVVSQ-----------EPVLFATTIA---ENIRYGREDVTMDEIEKA 499
Query: 951 VELTSLSGALIGLP-------GING--LSTEQRKRLTIAVELVANPSIVFMDEPTSGLDA 1001
V+ + ++ LP G G LS Q++R+ IA LV NP I+ +DE TS LD
Sbjct: 500 VKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDT 559
Query: 1002 RAAAIVMRTVRNIVNTGRTIVCTIHQPS 1029
+ A+V + GRT + H+ S
Sbjct: 560 ESEAVVQAALDKAR-EGRTTIVIAHRLS 586
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 52.7 bits (127), Expect = 7e-07
Identities = 51/205 (24%), Positives = 85/205 (41%), Gaps = 44/205 (21%)
Query: 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLM-------DVLAGRKTGGIIEGDIYISGYPK 895
+L ++ + G ALVG SG GK+T++ D +AG +++ G
Sbjct: 1047 PVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGS---------VFLDGKEI 1097
Query: 896 RQETFARISGYCEQNDIHS--PGL---TVLESLLFSAWLRLPSEIELETQRAFVEEVMEL 950
+Q + Q I S P L ++ E++ + R+ S EE++
Sbjct: 1098 KQ---LNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSY----------EEIVRA 1144
Query: 951 VELTSLSGALIGLP-------GING--LSTEQRKRLTIAVELVANPSIVFMDEPTSGLDA 1001
+ ++ + LP G G LS Q++R+ IA LV P I+ +DE TS LD
Sbjct: 1145 AKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDT 1204
Query: 1002 RAAAIVMRTVRNIVNTGRTIVCTIH 1026
+ +V + GRT + H
Sbjct: 1205 ESEKVVQEALDK-AREGRTCIVIAH 1228
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 7e-04
Identities = 59/263 (22%), Positives = 102/263 (38%), Gaps = 73/263 (27%)
Query: 145 RSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKE 204
R ++ IL L+ ++ + L+G GK+T + L RL + + G ++ +G +
Sbjct: 400 RKEVQILKGLNLKVKSGQTVALVGNSGCGKST-TVQLMQRL--YDPLDGMVSIDGQDIRT 456
Query: 205 FVPP--RTS-AYVSQQDWQVAE-----MTVRETLDFAGQCQGVGSKYDMITELARREKIA 256
R VSQ E T+ E + + + D I + +
Sbjct: 457 INVRYLREIIGVVSQ------EPVLFATTIAENIRYGRE----DVTMDEIEKAVK----- 501
Query: 257 GIKPDEDLDIFMKSFALGGQKTSLVVEYIMKI-LGLDTCADTLVGDEMLKGI--SGGQKK 313
++ A ++IMK+ D TLVG+ +G SGGQK+
Sbjct: 502 ------------EANAY---------DFIMKLPHQFD----TLVGE---RGAQLSGGQKQ 533
Query: 314 RLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVI------SLLQP 367
R+ LV ++L +DE ++ LD+ + + L +A +G T I S ++
Sbjct: 534 RIAIARALVRNPKILLLDEATSALDTESEAVVQAALD---KAREGRTTIVIAHRLSTVRN 590
Query: 368 APEAYELFDDVILLSEGQIVYQG 390
A D + G IV QG
Sbjct: 591 A-------DVIAGFDGGVIVEQG 606
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 58.4 bits (142), Expect = 5e-09
Identities = 53/191 (27%), Positives = 83/191 (43%), Gaps = 55/191 (28%)
Query: 845 LVNVTGAFRPGVLTA---------------LVGVSGAGKTTLMDVLAGRKTGGIIEGDIY 889
+ NV+ F+ G + A ++G SGAGKTT M ++AG G++Y
Sbjct: 6 VKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDV--PSTGELY 63
Query: 890 ISGY-----------PKRQET---FARISGYCEQNDIHSPGLTVLESLLFSAWLRL---- 931
P+ ++ F Q P LT E++ F L
Sbjct: 64 FDDRLVASNGKLIVPPEDRKIGMVF--------QTWALYPNLTAFENIAFP--LTNMKMS 113
Query: 932 PSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVF 991
EI +R VEEV +++++ + L P LS Q++R+ +A LV +PS++
Sbjct: 114 KEEIR---KR--VEEVAKILDIHHV---LNHFPR--ELSGAQQQRVALARALVKDPSLLL 163
Query: 992 MDEPTSGLDAR 1002
+DEP S LDAR
Sbjct: 164 LDEPFSNLDAR 174
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 1e-04
Identities = 64/305 (20%), Positives = 116/305 (38%), Gaps = 89/305 (29%)
Query: 130 MTEALLRQL-RIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHH 188
M +++ + ++++ K+ LD+++ I +LGP +GKTT + +AG
Sbjct: 1 MVRIIVKNVSKVFKKG--KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAG----- 53
Query: 189 LQV--SGKITYNG----HGFKEFVPP--RTSAYVSQQDWQVA---EMTVRETLDFAGQCQ 237
L V +G++ ++ K VPP R V Q W A +T E + F
Sbjct: 54 LDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQ-TW--ALYPNLTAFENIAFP---- 106
Query: 238 GVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADT 297
L + +E I + VE + KIL +
Sbjct: 107 -----------L----TNMKMSKEE---IRKR------------VEEVAKILDIH---HV 133
Query: 298 LVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDE-ISNGLDSSTTYQIIKYLKHSTRA- 355
L + + +SG Q++R+ LV +L +DE SN LD+ ++ S RA
Sbjct: 134 L--NHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSN-LDAR--------MRDSARAL 182
Query: 356 -------LDGTTVISLLQPAPEAYELFDDVILLSEGQI--------VYQGPR-VSVLDFF 399
L G T++ + + + + D V +L +G++ +Y P + V
Sbjct: 183 VKEVQSRL-GVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDNPVSIQVASLI 241
Query: 400 ASMGF 404
+
Sbjct: 242 GEINE 246
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 57.2 bits (139), Expect = 1e-08
Identities = 39/151 (25%), Positives = 73/151 (48%), Gaps = 11/151 (7%)
Query: 853 RPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYP-KRQETFARISGYCEQND 911
R G + L+G SG+GKTT++ ++AG + +GD++I G R G QN
Sbjct: 39 REGEMVGLLGPSGSGKTTILRLIAGLER--PTKGDVWIGGKRVTDLPPQKRNVGLVFQNY 96
Query: 912 IHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLST 971
+TV +++ F + + E++ + V E++ + L S + + LS
Sbjct: 97 ALFQHMTVYDNVSFGLREKRVPKDEMDAR---VRELLRFMRLESYANRFP-----HELSG 148
Query: 972 EQRKRLTIAVELVANPSIVFMDEPTSGLDAR 1002
Q++R+ +A L P ++ DEP + +D +
Sbjct: 149 GQQQRVALARALAPRPQVLLFDEPFAAIDTQ 179
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362 | Back alignment and structure |
|---|
Score = 54.5 bits (132), Expect = 9e-08
Identities = 45/172 (26%), Positives = 71/172 (41%), Gaps = 52/172 (30%)
Query: 860 LVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHS----- 914
L+G SG+GK+TL+ +AG G IY + ++
Sbjct: 34 LLGPSGSGKSTLLYTIAGIYK--PTSGKIYFDEK--------------DVTELPPKDRNV 77
Query: 915 ----------PGLTVLESLLFSAWLRL----PSEIELETQRAFVEEVMELVELTSLSGAL 960
P +TV +++ F L L EI+ ++ V EV +++ + L L
Sbjct: 78 GLVFQNWALYPHMTVYKNIAFP--LELRKAPREEID---KK--VREVAKMLHIDKL---L 127
Query: 961 IGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDA--RAAAIVMRT 1010
P LS Q++R+ IA LV P ++ +DEP S LDA R +R
Sbjct: 128 NRYPW--QLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLE---VRA 174
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 53.7 bits (130), Expect = 2e-07
Identities = 43/155 (27%), Positives = 68/155 (43%), Gaps = 15/155 (9%)
Query: 853 RPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIE-GDIYISGYPKRQETFARISGYCEQ 909
PG + ++G SG GKTTL+ LAG + G I I R GY Q
Sbjct: 28 DPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRLGYLVQ 87
Query: 910 NDIHS--PGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGIN 967
P LTV ++ + + +R +E ++EL ++ L+G +
Sbjct: 88 E--GVLFPHLTVYRNIAYGLGNGKGRTAQ---ERQRIEAMLELTGISELAGRYP-----H 137
Query: 968 GLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDAR 1002
LS Q++R +A L +P ++ +DEP S LD +
Sbjct: 138 ELSGGQQQRAALARALAPDPELILLDEPFSALDEQ 172
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 41.8 bits (99), Expect = 9e-04
Identities = 25/83 (30%), Positives = 37/83 (44%), Gaps = 10/83 (12%)
Query: 130 MTEAL-LRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHH 188
MT AL + L N +L+D+S + P + ++G GKTTLL LA G
Sbjct: 1 MTAALHIGHLSKSFQNT---PVLNDISLSLDPGEILFIIGASGCGKTTLLRCLA---GFE 54
Query: 189 LQVSGKITYNGH---GFKEFVPP 208
SG+I+ +G +P
Sbjct: 55 QPDSGEISLSGKTIFSKNTNLPV 77
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Length = 372 | Back alignment and structure |
|---|
Score = 53.4 bits (129), Expect = 2e-07
Identities = 49/172 (28%), Positives = 72/172 (41%), Gaps = 52/172 (30%)
Query: 860 LVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHS----- 914
L+G SG GKTT + ++AG + EG IY + +
Sbjct: 42 LLGPSGCGKTTTLRMIAGLEE--PTEGRIYFGD--------------RDVTYLPPKDRNI 85
Query: 915 ----------PGLTVLESLLFSAWLRL----PSEIELETQRAFVEEVMELVELTSLSGAL 960
P +TV E++ F L++ EI+ +R V EL+++ L L
Sbjct: 86 SMVFQSYAVWPHMTVYENIAFP--LKIKKFPKDEID---KR--VRWAAELLQIEEL---L 135
Query: 961 IGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDA--RAAAIVMRT 1010
P LS QR+R+ +A +V P ++ MDEP S LDA R A MR
Sbjct: 136 NRYPA--QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVA---MRA 182
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 53.0 bits (128), Expect = 4e-07
Identities = 51/204 (25%), Positives = 88/204 (43%), Gaps = 48/204 (23%)
Query: 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLM-------DVLAGRKTGGIIEGDIYIS 891
++ +L ++ + G A VG+SG GK+TL+ DV +G+ I I
Sbjct: 351 DNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQ---------ILID 401
Query: 892 GYPKRQETFA----RISGYCEQNDIHSPGLTVL-ESLLFSAWLRLPSEIELETQRAFVEE 946
G+ + +I V +++LFS ++ I L A EE
Sbjct: 402 GHNIKDFLTGSLRNQIG-------------LVQQDNILFSDTVK--ENILLGRPTATDEE 446
Query: 947 VMELVELTSLSGALIGLP----------GINGLSTEQRKRLTIAVELVANPSIVFMDEPT 996
V+E ++ + ++ LP G+ LS Q++RL+IA + NP I+ +DE T
Sbjct: 447 VVEAAKMANAHDFIMNLPQGYDTEVGERGVK-LSGGQKQRLSIARIFLNNPPILILDEAT 505
Query: 997 SGLDARAAAIVMRTVRNIVNTGRT 1020
S LD + +I+ + + RT
Sbjct: 506 SALDLESESIIQEALDVLSK-DRT 528
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A Length = 372 | Back alignment and structure |
|---|
Score = 52.2 bits (126), Expect = 4e-07
Identities = 53/167 (31%), Positives = 73/167 (43%), Gaps = 36/167 (21%)
Query: 860 LVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCE----------Q 909
L+G SG GKTT + ++AG + G IYI + + Q
Sbjct: 34 LLGPSGCGKTTTLRMIAGLEE--PSRGQIYIGD---KLVADPEKGIFVPPKDRDIAMVFQ 88
Query: 910 NDIHSPGLTVLESLLFSAWLRL----PSEIELETQRAFVEEVMELVELTSLSGALIGLPG 965
+ P +TV +++ F L+L EI+ QR V EV EL+ LT L L P
Sbjct: 89 SYALYPHMTVYDNIAFP--LKLRKVPRQEID---QR--VREVAELLGLTEL---LNRKPR 138
Query: 966 INGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDA--RAAAIVMRT 1010
LS QR+R+ + +V P + MDEP S LDA R MR
Sbjct: 139 --ELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVR---MRA 180
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Length = 359 | Back alignment and structure |
|---|
Score = 51.8 bits (125), Expect = 6e-07
Identities = 50/172 (29%), Positives = 69/172 (40%), Gaps = 52/172 (30%)
Query: 860 LVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHS----- 914
L+G SG GKTT + +LAG G+IY NDI
Sbjct: 34 LLGPSGCGKTTTLLMLAGIYK--PTSGEIYFDDV--------------LVNDIPPKYREV 77
Query: 915 ----------PGLTVLESLLFSAWLRL----PSEIELETQRAFVEEVMELVELTSLSGAL 960
P +TV E++ F LR E+E +R V E+ + + +L L
Sbjct: 78 GMVFQNYALYPHMTVFENIAFP--LRARRISKDEVE---KR--VVEIARKLLIDNL---L 127
Query: 961 IGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDA--RAAAIVMRT 1010
P LS Q++R+ +A LV P ++ DEP S LDA R MR
Sbjct: 128 DRKPT--QLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMI---MRA 174
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 49.4 bits (119), Expect = 2e-06
Identities = 49/201 (24%), Positives = 76/201 (37%), Gaps = 44/201 (21%)
Query: 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIE-GDIYISGYPKR 896
+ + + G + L+G +GAGKTT + +AG R G I I+ P
Sbjct: 17 GAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAH 76
Query: 897 QETFARISGYCEQNDIHSP-------GLTVLESLLFSAWLRLPSEIELETQRAFVEEVME 949
I+ P LTV E+L+ A+ R + ++ +E
Sbjct: 77 VINRMGIA--------LVPEGRRIFPELTVYENLMMGAYNR--------KDKEGIKRDLE 120
Query: 950 LV-EL--------TSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLD 1000
+ L L G L G G EQ + L I L++ P ++ MDEP+ GL
Sbjct: 121 WIFSLFPRLKERLKQLGGTLSG--G------EQ-QMLAIGRALMSRPKLLMMDEPSLGLA 171
Query: 1001 ARAAAIVMRTVRNIVNTGRTI 1021
+ V ++ I G TI
Sbjct: 172 PILVSEVFEVIQKINQEGTTI 192
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 42.4 bits (101), Expect = 4e-04
Identities = 59/282 (20%), Positives = 103/282 (36%), Gaps = 81/282 (28%)
Query: 130 MTEALL--RQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGH 187
+++ +L + L +Y G + + + + ++ L+G +GKTT L A+AG +
Sbjct: 2 VSDIVLEVQSLHVYYG---AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRA 58
Query: 188 HLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAE-------MTVRETLDFAGQC---- 236
GKI +NG ++ V E +TV E L
Sbjct: 59 Q---KGKIIFNG---QDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDK 112
Query: 237 QGVGSKYDMITEL-----ARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGL 291
+G+ + I L R +++ G
Sbjct: 113 EGIKRDLEWIFSLFPRLKERLKQLGG---------------------------------- 138
Query: 292 DTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKH 351
TL SGG+++ L G L+ ++L MDE S GL ++ + ++
Sbjct: 139 -----TL---------SGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQK 184
Query: 352 STRALDGTTVISLL--QPAPEAYELFDDVILLSEGQIVYQGP 391
+ +GTT+ LL Q A A ++ +L GQIV +G
Sbjct: 185 INQ--EGTTI--LLVEQNALGALKVAHYGYVLETGQIVLEGK 222
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 50.7 bits (122), Expect = 2e-06
Identities = 47/213 (22%), Positives = 79/213 (37%), Gaps = 54/213 (25%)
Query: 813 QPLSMAFGNINYFVDVPV--ELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTT 870
G ++ DV + K++ L V+ + G ALVG SG+GK+T
Sbjct: 333 YEAERVNGEVD-VKDVTFTYQGKEKPALSH-----VSFS--IPQGKTVALVGRSGSGKST 384
Query: 871 LMDVLA----GRKTGGIIEGDIYISGYPKRQETFA---RISGYCEQNDIHSPGLTVLESL 923
+ ++ + G I + G+ R R Q
Sbjct: 385 IANLFTRFYD------VDSGSICLDGHDVRDYKLTNLRRHFALVSQ-----------NVH 427
Query: 924 LFS-------AWLRLPS----EIELETQRAFVEE-VMELVELTSLSG--ALIGLPGINGL 969
LF+ A+ +IE ++A E + + + G +IG G + L
Sbjct: 428 LFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQ-----GLDTVIGENGTS-L 481
Query: 970 STEQRKRLTIAVELVANPSIVFMDEPTSGLDAR 1002
S QR+R+ IA L+ + ++ +DE TS LD
Sbjct: 482 SGGQRQRVAIARALLRDAPVLILDEATSALDTE 514
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 49.9 bits (120), Expect = 3e-06
Identities = 39/168 (23%), Positives = 65/168 (38%), Gaps = 60/168 (35%)
Query: 859 ALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYP-------KRQETFARISGYCEQND 911
++G +GAGKT ++++AG G I + G K D
Sbjct: 30 VILGPTGAGKTLFLELIAGFHV--PDSGRILLDGKDVTDLSPEKH--------------D 73
Query: 912 IHS--------PGLTVLESLLFSAWLRLP-SEIELETQRAFVEEVMELVELTS------- 955
I P + V ++L F +R+ + +R V + +++
Sbjct: 74 IAFVYQNYSLFPHMNVKKNLEFG--MRMKKIKDP---KR--VLDTARDLKIEHLLDRNPL 126
Query: 956 -LSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDAR 1002
LSG G +++R+ +A LV NP I+ +DEP S LD R
Sbjct: 127 TLSG---------G----EQQRVALARALVTNPKILLLDEPLSALDPR 161
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 48.7 bits (117), Expect = 4e-06
Identities = 48/210 (22%), Positives = 76/210 (36%), Gaps = 53/210 (25%)
Query: 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIE-------GDIYISGYPK 895
Q+L +T PG +TALVG +G+GK+T+ +++ G + + G P
Sbjct: 33 QVLQGLTFTLYPGKVTALVGPNGSGKSTVA---------ALLQNLYQPTGGKVLLDGEPL 83
Query: 896 RQ---ETFARISGYCEQNDIHSPGLTVLESLLFSAWLR------LPSEIELETQRAFVEE 946
Q Q E LLF R L +EE
Sbjct: 84 VQYDHHYLHTQVAAVGQ-----------EPLLFGRSFRENIAYGLTRT-------PTMEE 125
Query: 947 VMELVELTSLSGALIGLP-------GING--LSTEQRKRLTIAVELVANPSIVFMDEPTS 997
+ + + + G P G G LS QR+ + +A L+ P ++ +D TS
Sbjct: 126 ITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATS 185
Query: 998 GLDARAAAIVMRTV-RNIVNTGRTIVCTIH 1026
LDA V R + + RT++
Sbjct: 186 ALDAGNQLRVQRLLYESPEWASRTVLLITQ 215
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 49.9 bits (120), Expect = 4e-06
Identities = 46/181 (25%), Positives = 75/181 (41%), Gaps = 48/181 (26%)
Query: 845 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLA----GRKTGGIIEGDIYISGYPKRQETF 900
L N+ G ALVG SG+GK+T+ ++ I EG I + G+ R+ T
Sbjct: 359 LRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYD------IDEGHILMDGHDLREYTL 412
Query: 901 A----RISGYCEQNDIHSPGLTVL-ESLLFS---------AWLRLPSEIELET--QRAFV 944
A +++ V LF+ A S ++E + A+
Sbjct: 413 ASLRNQVA-------------LVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYA 459
Query: 945 EE-VMELVELTSLSG--ALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDA 1001
+ + ++ G +IG G+ LS QR+R+ IA L+ + I+ +DE TS LD
Sbjct: 460 MDFINKMDN-----GLDTIIGENGVL-LSGGQRQRIAIARALLRDSPILILDEATSALDT 513
Query: 1002 R 1002
Sbjct: 514 E 514
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B Length = 339 | Back alignment and structure |
|---|
Score = 48.5 bits (115), Expect = 7e-06
Identities = 15/87 (17%), Positives = 34/87 (39%), Gaps = 8/87 (9%)
Query: 966 INGLSTEQRKRLTIAVEL------VANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGR 1019
+ LS +R L +A L S++ +DEPT LD ++ + +
Sbjct: 246 LTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIP 305
Query: 1020 TIVCTIHQPSIDIFESFDELLFMKRGG 1046
++ H ++ ++ D ++ +
Sbjct: 306 QVILVSHDE--ELKDAADHVIRISLEN 330
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 48.5 bits (116), Expect = 8e-06
Identities = 35/136 (25%), Positives = 56/136 (41%), Gaps = 33/136 (24%)
Query: 308 SGGQKKRLTTGELLVGPAR-------VLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTT 360
SGGQK+R V AR VL D+ ++ LD +TT I++ LK R L T
Sbjct: 165 SGGQKQR-------VAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTI 217
Query: 361 VI-----SLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADF 415
++ +++ + D V ++S G+++ Q V + F+ PK F
Sbjct: 218 LLITHEMDVVK------RICDCVAVISNGELIEQDT---VSEVFSH-----PKTPLAQKF 263
Query: 416 LQEVTSKKDQEQYWSN 431
+Q E Y
Sbjct: 264 IQSTLHLDIPEDYQER 279
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 2e-05
Identities = 52/199 (26%), Positives = 87/199 (43%), Gaps = 35/199 (17%)
Query: 845 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGG-IIEGDIYISGYPKRQETFA 901
L NV+ G + ++G SGAGK+TL+ + R T G ++ ++ + + T A
Sbjct: 44 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 103
Query: 902 RIS-GYCEQ--NDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELT---- 954
R G Q N + S TV ++ L L + + V E++ LV L
Sbjct: 104 RRQIGMIFQHFNLLSS--RTVFGNVALP--LEL-DNTPKDEVKRRVTELLSLVGLGDKHD 158
Query: 955 ----SLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRT 1010
+LSG Q++R+ IA L +NP ++ D+ TS LD ++
Sbjct: 159 SYPSNLSGG-------------QKQRVAIARALASNPKVLLCDQATSALDPATTRSILEL 205
Query: 1011 VRNIVN--TGRTIVCTIHQ 1027
+++I N G TI+ H+
Sbjct: 206 LKDI-NRRLGLTILLITHE 223
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263 | Back alignment and structure |
|---|
Score = 45.7 bits (109), Expect = 3e-05
Identities = 56/222 (25%), Positives = 91/222 (40%), Gaps = 41/222 (18%)
Query: 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFA 901
L++L + R G + ++G SG+GK+T + L + EG+I I G + +
Sbjct: 37 LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLED--FDEGEIIIDGINLKAK--- 91
Query: 902 RISGYCEQNDIHS---------------PGLTVLESLLFS-AWLRLPSEIELETQRAFVE 945
+++ P +TVL ++ + +R + E
Sbjct: 92 -------DTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAE------A 138
Query: 946 EVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAA 1005
+ MEL++ L P LS Q +R+ IA L P I+ DEPTS LD
Sbjct: 139 KAMELLDKVGLKDKAHAYPD--SLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVG 196
Query: 1006 IVMRTVRNIVNTGRTIVCTIHQPSIDIF--ESFDELLFMKRG 1045
V+ ++ + N G T+V H+ F E D +LFM G
Sbjct: 197 EVLSVMKQLANEGMTMVVVTHEMG---FAREVGDRVLFMDGG 235
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A Length = 381 | Back alignment and structure |
|---|
Score = 44.1 bits (105), Expect = 2e-04
Identities = 56/172 (32%), Positives = 76/172 (44%), Gaps = 52/172 (30%)
Query: 860 LVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHS----- 914
VG SG GK+TL+ ++AG +T I GD++I R+ ND
Sbjct: 34 FVGPSGCGKSTLLRMIAGLET--ITSGDLFIGE--------KRM------NDTPPAERGV 77
Query: 915 ----------PGLTVLESLLFSAWLRL----PSEIELETQRAFVEEVMELVELTSLSGAL 960
P L+V E++ F L+L I QR V +V E+++L L L
Sbjct: 78 GMVFQSYALYPHLSVAENMSFG--LKLAGAKKEVIN---QR--VNQVAEVLQLAHL---L 127
Query: 961 IGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDA--RAAAIVMRT 1010
P LS QR+R+ I LVA PS+ +DEP S LDA R MR
Sbjct: 128 DRKPK--ALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQ---MRI 174
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* Length = 250 | Back alignment and structure |
|---|
Score = 41.7 bits (99), Expect = 7e-04
Identities = 50/192 (26%), Positives = 76/192 (39%), Gaps = 51/192 (26%)
Query: 853 RPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISG-------------------- 892
G + AL+G +GAGK+TL +LAG + G+I + G
Sbjct: 27 PKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKGLFLAF 86
Query: 893 -YPKRQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELV 951
YP + PG+T+ L + +L E+ + V++ +EL+
Sbjct: 87 QYP-----------------VEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELL 129
Query: 952 ELTS--LSGALIGLPGIN-GLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVM 1008
+ LS L N G S ++KR I LV P+ +DE SGLD A +
Sbjct: 130 DWDESYLSRYL------NEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDA----L 179
Query: 1009 RTVRNIVNTGRT 1020
+ V VN R
Sbjct: 180 KVVARGVNAMRG 191
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262 | Back alignment and structure |
|---|
Score = 41.4 bits (98), Expect = 9e-04
Identities = 48/227 (21%), Positives = 94/227 (41%), Gaps = 39/227 (17%)
Query: 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYP-KRQETF 900
++L V+ R G + +++G SG+GK+T + + + EG I ++G
Sbjct: 19 HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEK--PSEGAIIVNGQNINLVRDK 76
Query: 901 ARISGYCEQNDIHS---------------PGLTVLESLLFSAWLRLPSEIELETQRAFVE 945
++N + +TVLE+++ + P ++ ++ E
Sbjct: 77 DGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEA-----PIQVLGLSKHDARE 131
Query: 946 EVMELVELTSLSG-ALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAA 1004
++ + + A P LS Q++R++IA L P ++ DEPTS LD
Sbjct: 132 RALKYLAKVGIDERAQGKYPV--HLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELV 189
Query: 1005 AIVMRTVRNIVNTGRTIVCTIHQPSIDIFE-SF-----DELLFMKRG 1045
V+R ++ + G+T+V H E F ++F+ +G
Sbjct: 190 GEVLRIMQQLAEEGKTMVVVTH-------EMGFARHVSSHVIFLHQG 229
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1085 | |||
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 100.0 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 100.0 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 100.0 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 100.0 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 100.0 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 100.0 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 100.0 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 100.0 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 100.0 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 100.0 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 100.0 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 100.0 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 100.0 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 100.0 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 100.0 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 100.0 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 100.0 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 100.0 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 100.0 | |
| 4g1u_C | 266 | Hemin import ATP-binding protein HMUV; membrane tr | 100.0 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 100.0 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 100.0 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 100.0 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 100.0 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 100.0 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 100.0 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 100.0 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 100.0 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 100.0 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 100.0 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 100.0 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 100.0 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 100.0 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 100.0 | |
| 4g1u_C | 266 | Hemin import ATP-binding protein HMUV; membrane tr | 100.0 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 100.0 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 100.0 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 100.0 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 100.0 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 100.0 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 100.0 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 100.0 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 100.0 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 100.0 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 100.0 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 100.0 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 100.0 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 100.0 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 100.0 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 100.0 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 100.0 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 100.0 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 100.0 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 100.0 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 100.0 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 100.0 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 100.0 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 100.0 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 100.0 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 100.0 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 100.0 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 100.0 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 100.0 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 100.0 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 100.0 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 100.0 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 100.0 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 100.0 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 100.0 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 100.0 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 100.0 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 100.0 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 100.0 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 100.0 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 100.0 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 100.0 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 100.0 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 100.0 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 100.0 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 100.0 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 100.0 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 100.0 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 100.0 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 100.0 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 100.0 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 100.0 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 100.0 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 100.0 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 99.97 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 99.97 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 99.97 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 99.96 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 99.96 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 99.96 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 99.96 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 99.93 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 99.92 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 99.92 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 99.92 | |
| 4aby_A | 415 | DNA repair protein RECN; hydrolase, double strand | 99.91 | |
| 2npi_A | 460 | Protein CLP1; CLP1-PCF11 complex, ATP binding, ter | 99.91 | |
| 2npi_A | 460 | Protein CLP1; CLP1-PCF11 complex, ATP binding, ter | 99.91 | |
| 4aby_A | 415 | DNA repair protein RECN; hydrolase, double strand | 99.89 | |
| 3b85_A | 208 | Phosphate starvation-inducible protein; PHOH2, ATP | 99.88 | |
| 3qf7_A | 365 | RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1. | 99.87 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 99.87 | |
| 1e69_A | 322 | Chromosome segregation SMC protein; structural mai | 99.86 | |
| 3b85_A | 208 | Phosphate starvation-inducible protein; PHOH2, ATP | 99.85 | |
| 3qf7_A | 365 | RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1. | 99.85 | |
| 2v9p_A | 305 | Replication protein E1; AAA+ molecular motor, DNA | 99.83 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 99.82 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 99.82 | |
| 1e69_A | 322 | Chromosome segregation SMC protein; structural mai | 99.81 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 99.81 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 99.81 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 99.81 | |
| 1znw_A | 207 | Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans | 99.81 | |
| 3b9q_A | 302 | Chloroplast SRP receptor homolog, alpha subunit CP | 99.77 | |
| 3b9q_A | 302 | Chloroplast SRP receptor homolog, alpha subunit CP | 99.77 | |
| 2v9p_A | 305 | Replication protein E1; AAA+ molecular motor, DNA | 99.76 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 99.76 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 99.76 | |
| 2pt7_A | 330 | CAG-ALFA; ATPase, protein-protein complex, type IV | 99.74 | |
| 2og2_A | 359 | Putative signal recognition particle receptor; nuc | 99.74 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 99.74 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 99.74 | |
| 2og2_A | 359 | Putative signal recognition particle receptor; nuc | 99.74 | |
| 2o5v_A | 359 | DNA replication and repair protein RECF; ABC ATPas | 99.74 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 99.73 | |
| 1znw_A | 207 | Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans | 99.72 | |
| 3aez_A | 312 | Pantothenate kinase; transferase, homodimer, COA b | 99.72 | |
| 2dpy_A | 438 | FLII, flagellum-specific ATP synthase; beta barrel | 99.71 | |
| 2dpy_A | 438 | FLII, flagellum-specific ATP synthase; beta barrel | 99.71 | |
| 2o5v_A | 359 | DNA replication and repair protein RECF; ABC ATPas | 99.7 | |
| 2pt7_A | 330 | CAG-ALFA; ATPase, protein-protein complex, type IV | 99.69 | |
| 1cr0_A | 296 | DNA primase/helicase; RECA-type protein fold, tran | 99.69 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 99.66 | |
| 1f2t_B | 148 | RAD50 ABC-ATPase; DNA double-strand break repair, | 99.66 | |
| 1cr0_A | 296 | DNA primase/helicase; RECA-type protein fold, tran | 99.65 | |
| 2jeo_A | 245 | Uridine-cytidine kinase 1; UCK, transferase, ATP-b | 99.65 | |
| 4ad8_A | 517 | DNA repair protein RECN; DNA binding protein, ATPa | 99.65 | |
| 2o8b_B | 1022 | DNA mismatch repair protein MSH6; DNA damage respo | 99.64 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 99.63 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 99.63 | |
| 3aez_A | 312 | Pantothenate kinase; transferase, homodimer, COA b | 99.62 | |
| 2jeo_A | 245 | Uridine-cytidine kinase 1; UCK, transferase, ATP-b | 99.62 | |
| 3thx_A | 934 | DNA mismatch repair protein MSH2; ABC family ATPas | 99.61 | |
| 2obl_A | 347 | ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O | 99.6 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 99.6 | |
| 3thx_A | 934 | DNA mismatch repair protein MSH2; ABC family ATPas | 99.59 | |
| 2obl_A | 347 | ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O | 99.58 | |
| 4a74_A | 231 | DNA repair and recombination protein RADA; hydrola | 99.58 | |
| 3thx_B | 918 | DNA mismatch repair protein MSH3; ABC family ATPas | 99.57 | |
| 1ewq_A | 765 | DNA mismatch repair protein MUTS; multiple domains | 99.56 | |
| 4a74_A | 231 | DNA repair and recombination protein RADA; hydrola | 99.55 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 99.55 | |
| 2o8b_B | 1022 | DNA mismatch repair protein MSH6; DNA damage respo | 99.55 | |
| 3asz_A | 211 | Uridine kinase; cytidine phosphorylation, transfer | 99.55 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 99.53 | |
| 1f2t_B | 148 | RAD50 ABC-ATPase; DNA double-strand break repair, | 99.53 | |
| 1rj9_A | 304 | FTSY, signal recognition protein; SRP-GTPase domai | 99.52 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 99.52 | |
| 3asz_A | 211 | Uridine kinase; cytidine phosphorylation, transfer | 99.52 | |
| 2i3b_A | 189 | HCR-ntpase, human cancer-related ntpase; AAA, ross | 99.52 | |
| 1pzn_A | 349 | RAD51, DNA repair and recombination protein RAD51, | 99.51 | |
| 1pzn_A | 349 | RAD51, DNA repair and recombination protein RAD51, | 99.51 | |
| 2i3b_A | 189 | HCR-ntpase, human cancer-related ntpase; AAA, ross | 99.5 | |
| 1w1w_A | 430 | Structural maintenance of chromosome 1; cohesin, c | 99.5 | |
| 3thx_B | 918 | DNA mismatch repair protein MSH3; ABC family ATPas | 99.49 | |
| 1rj9_A | 304 | FTSY, signal recognition protein; SRP-GTPase domai | 99.49 | |
| 1wb9_A | 800 | DNA mismatch repair protein MUTS; DNA-binding, ATP | 99.48 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 99.48 | |
| 1ewq_A | 765 | DNA mismatch repair protein MUTS; multiple domains | 99.48 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 99.46 | |
| 3szr_A | 608 | Interferon-induced GTP-binding protein MX1; interf | 99.46 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 99.46 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 99.45 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 99.42 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 99.41 | |
| 1wb9_A | 800 | DNA mismatch repair protein MUTS; DNA-binding, ATP | 99.41 | |
| 3szr_A | 608 | Interferon-induced GTP-binding protein MX1; interf | 99.4 | |
| 3kta_B | 173 | Chromosome segregation protein SMC; structural mai | 99.39 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 99.39 | |
| 2qag_B | 427 | Septin-6, protein NEDD5; cell cycle, cell division | 99.39 | |
| 4ad8_A | 517 | DNA repair protein RECN; DNA binding protein, ATPa | 99.37 | |
| 1s96_A | 219 | Guanylate kinase, GMP kinase; E.coli, dimer, SAD, | 99.36 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 99.35 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 99.34 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 99.34 | |
| 1s96_A | 219 | Guanylate kinase, GMP kinase; E.coli, dimer, SAD, | 99.33 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 99.32 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 99.31 | |
| 3kta_B | 173 | Chromosome segregation protein SMC; structural mai | 99.31 | |
| 2bdt_A | 189 | BH3686; alpha-beta protein, structural genomics, P | 99.3 | |
| 1htw_A | 158 | HI0065; nucleotide-binding fold, structural genomi | 99.28 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 99.27 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 99.26 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 99.26 | |
| 2f1r_A | 171 | Molybdopterin-guanine dinucleotide biosynthesis pr | 99.26 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 99.25 | |
| 2gza_A | 361 | Type IV secretion system protein VIRB11; ATPase, h | 99.25 | |
| 2gza_A | 361 | Type IV secretion system protein VIRB11; ATPase, h | 99.24 | |
| 2bdt_A | 189 | BH3686; alpha-beta protein, structural genomics, P | 99.24 | |
| 1nij_A | 318 | Hypothetical protein YJIA; structural genomics, P- | 99.24 | |
| 1odf_A | 290 | YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser | 99.2 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 99.19 | |
| 2qag_B | 427 | Septin-6, protein NEDD5; cell cycle, cell division | 99.19 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 99.19 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 99.18 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 99.17 | |
| 2bbw_A | 246 | Adenylate kinase 4, AK4; nucleotide kinase, nucleo | 99.17 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 99.17 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 99.16 | |
| 2bbw_A | 246 | Adenylate kinase 4, AK4; nucleotide kinase, nucleo | 99.16 | |
| 1htw_A | 158 | HI0065; nucleotide-binding fold, structural genomi | 99.15 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 99.15 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 99.13 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 99.13 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 99.12 | |
| 1w1w_A | 430 | Structural maintenance of chromosome 1; cohesin, c | 99.11 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 99.11 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 99.11 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 99.1 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 99.09 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 99.08 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 99.08 | |
| 1p9r_A | 418 | General secretion pathway protein E; bacterial typ | 99.05 | |
| 2f1r_A | 171 | Molybdopterin-guanine dinucleotide biosynthesis pr | 99.05 | |
| 1nij_A | 318 | Hypothetical protein YJIA; structural genomics, P- | 99.05 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 99.05 | |
| 2oap_1 | 511 | GSPE-2, type II secretion system protein; hexameri | 99.05 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 99.04 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 99.02 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 99.0 | |
| 3lda_A | 400 | DNA repair protein RAD51; DNA binding protein, ATP | 99.0 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 98.98 | |
| 1p9r_A | 418 | General secretion pathway protein E; bacterial typ | 98.97 | |
| 1odf_A | 290 | YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser | 98.96 | |
| 3c8u_A | 208 | Fructokinase; YP_612366.1, putative fructose trans | 98.94 | |
| 2oap_1 | 511 | GSPE-2, type II secretion system protein; hexameri | 98.93 | |
| 2x8a_A | 274 | Nuclear valosin-containing protein-like; nuclear p | 98.93 | |
| 1ni3_A | 392 | YCHF GTPase, YCHF GTP-binding protein; structural | 98.91 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 98.89 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 98.88 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 98.88 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 98.87 | |
| 1sq5_A | 308 | Pantothenate kinase; P-loop, transferase; HET: PAU | 98.83 | |
| 3c8u_A | 208 | Fructokinase; YP_612366.1, putative fructose trans | 98.81 | |
| 3lda_A | 400 | DNA repair protein RAD51; DNA binding protein, ATP | 98.8 | |
| 1in4_A | 334 | RUVB, holliday junction DNA helicase RUVB; AAA+-cl | 98.79 | |
| 1ni3_A | 392 | YCHF GTPase, YCHF GTP-binding protein; structural | 98.78 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 98.78 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 98.77 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 98.74 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 98.71 | |
| 1sq5_A | 308 | Pantothenate kinase; P-loop, transferase; HET: PAU | 98.7 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 98.65 | |
| 2x8a_A | 274 | Nuclear valosin-containing protein-like; nuclear p | 98.64 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 98.62 | |
| 1in4_A | 334 | RUVB, holliday junction DNA helicase RUVB; AAA+-cl | 98.62 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 98.61 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 98.6 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 98.6 | |
| 2r6a_A | 454 | DNAB helicase, replicative helicase; replication, | 98.59 | |
| 3k1j_A | 604 | LON protease, ATP-dependent protease LON; ATP-bind | 98.58 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 98.58 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 98.57 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 98.55 | |
| 1ls1_A | 295 | Signal recognition particle protein; FFH, SRP54, S | 98.54 | |
| 3tr0_A | 205 | Guanylate kinase, GMP kinase; purines, pyrimidines | 98.52 | |
| 2r6a_A | 454 | DNAB helicase, replicative helicase; replication, | 98.51 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 98.51 | |
| 2zr9_A | 349 | Protein RECA, recombinase A; recombination, RECA m | 98.49 | |
| 1ls1_A | 295 | Signal recognition particle protein; FFH, SRP54, S | 98.45 | |
| 1iy2_A | 278 | ATP-dependent metalloprotease FTSH; AAA domain fol | 98.42 | |
| 2ius_A | 512 | DNA translocase FTSK; nucleotide-binding, chromoso | 98.42 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 98.41 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 98.4 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 98.39 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 98.38 | |
| 1iy2_A | 278 | ATP-dependent metalloprotease FTSH; AAA domain fol | 98.38 | |
| 3k1j_A | 604 | LON protease, ATP-dependent protease LON; ATP-bind | 98.35 | |
| 3hr8_A | 356 | Protein RECA; alpha and beta proteins (A/B, A+B), | 98.34 | |
| 3tr0_A | 205 | Guanylate kinase, GMP kinase; purines, pyrimidines | 98.32 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 98.3 | |
| 2ius_A | 512 | DNA translocase FTSK; nucleotide-binding, chromoso | 98.28 | |
| 2zr9_A | 349 | Protein RECA, recombinase A; recombination, RECA m | 98.27 | |
| 1qhl_A | 227 | Protein (cell division protein MUKB); SMC, chromos | 98.24 | |
| 3lnc_A | 231 | Guanylate kinase, GMP kinase; ALS collaborative cr | 98.22 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 98.15 | |
| 2ce7_A | 476 | Cell division protein FTSH; metalloprotease; HET: | 98.11 | |
| 2qtf_A | 364 | Protein HFLX, GTP-binding protein; beta-alpha-barr | 98.09 | |
| 4eun_A | 200 | Thermoresistant glucokinase; putative sugar kinase | 98.08 | |
| 1qhl_A | 227 | Protein (cell division protein MUKB); SMC, chromos | 98.04 | |
| 3lnc_A | 231 | Guanylate kinase, GMP kinase; ALS collaborative cr | 98.04 | |
| 3hr8_A | 356 | Protein RECA; alpha and beta proteins (A/B, A+B), | 98.02 | |
| 2ce7_A | 476 | Cell division protein FTSH; metalloprotease; HET: | 98.01 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 97.98 | |
| 3kta_A | 182 | Chromosome segregation protein SMC; structural mai | 97.97 | |
| 4eun_A | 200 | Thermoresistant glucokinase; putative sugar kinase | 97.96 | |
| 4a1f_A | 338 | DNAB helicase, replicative DNA helicase; hydrolase | 97.95 | |
| 2qtf_A | 364 | Protein HFLX, GTP-binding protein; beta-alpha-barr | 97.94 | |
| 2j41_A | 207 | Guanylate kinase; GMP, GMK, transferase, ATP-bindi | 97.88 | |
| 1zu4_A | 320 | FTSY; GTPase, signal recognition particle, SRP, re | 97.88 | |
| 2xau_A | 773 | PRE-mRNA-splicing factor ATP-dependent RNA helica; | 97.87 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 97.85 | |
| 2dhr_A | 499 | FTSH; AAA+ protein, hexameric Zn metalloprotease, | 97.84 | |
| 3a00_A | 186 | Guanylate kinase, GMP kinase; domain movement, dim | 97.79 | |
| 2e87_A | 357 | Hypothetical protein PH1320; GTP-binding, GTPase, | 97.77 | |
| 2xau_A | 773 | PRE-mRNA-splicing factor ATP-dependent RNA helica; | 97.74 | |
| 3uie_A | 200 | Adenylyl-sulfate kinase 1, chloroplastic; rossmann | 97.73 | |
| 4a1f_A | 338 | DNAB helicase, replicative DNA helicase; hydrolase | 97.73 | |
| 3nwj_A | 250 | ATSK2; P loop, shikimate, nucleoside monophosphate | 97.69 | |
| 4e22_A | 252 | Cytidylate kinase; P-loop, CMP/ATP binding, transf | 97.66 | |
| 2j41_A | 207 | Guanylate kinase; GMP, GMK, transferase, ATP-bindi | 97.62 | |
| 3nwj_A | 250 | ATSK2; P loop, shikimate, nucleoside monophosphate | 97.6 | |
| 2dhr_A | 499 | FTSH; AAA+ protein, hexameric Zn metalloprotease, | 97.59 | |
| 1svm_A | 377 | Large T antigen; AAA+ fold, viral protein; HET: AT | 97.59 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 97.58 | |
| 2dy1_A | 665 | Elongation factor G; translocation, GTP complex, s | 97.57 | |
| 3bh0_A | 315 | DNAB-like replicative helicase; ATPase, replicatio | 97.56 | |
| 2vp4_A | 230 | Deoxynucleoside kinase; ATP-binding, DNA synthesis | 97.53 | |
| 4e22_A | 252 | Cytidylate kinase; P-loop, CMP/ATP binding, transf | 97.53 | |
| 1zu4_A | 320 | FTSY; GTPase, signal recognition particle, SRP, re | 97.52 | |
| 3kta_A | 182 | Chromosome segregation protein SMC; structural mai | 97.51 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 97.49 | |
| 3tqc_A | 321 | Pantothenate kinase; biosynthesis of cofactors, pr | 97.47 | |
| 1jjv_A | 206 | Dephospho-COA kinase; P-loop nucleotide-binding fo | 97.46 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 97.45 | |
| 1knq_A | 175 | Gluconate kinase; ALFA/beta structure, transferase | 97.43 | |
| 3tau_A | 208 | Guanylate kinase, GMP kinase; structural genomics, | 97.41 | |
| 1rz3_A | 201 | Hypothetical protein rbstp0775; MCSG, structural g | 97.4 | |
| 3t34_A | 360 | Dynamin-related protein 1A, linker, dynamin-relat | 97.4 | |
| 2vp4_A | 230 | Deoxynucleoside kinase; ATP-binding, DNA synthesis | 97.4 | |
| 2qt1_A | 207 | Nicotinamide riboside kinase 1; non-protein kinase | 97.38 | |
| 3a00_A | 186 | Guanylate kinase, GMP kinase; domain movement, dim | 97.38 | |
| 1ega_A | 301 | Protein (GTP-binding protein ERA); GTPase, RNA-bin | 97.36 | |
| 1v5w_A | 343 | DMC1, meiotic recombination protein DMC1/LIM15 hom | 97.35 | |
| 3ney_A | 197 | 55 kDa erythrocyte membrane protein; structural ge | 97.33 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 97.32 | |
| 1jjv_A | 206 | Dephospho-COA kinase; P-loop nucleotide-binding fo | 97.32 | |
| 3b9p_A | 297 | CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc | 97.29 | |
| 3t34_A | 360 | Dynamin-related protein 1A, linker, dynamin-relat | 97.27 | |
| 3uie_A | 200 | Adenylyl-sulfate kinase 1, chloroplastic; rossmann | 97.25 | |
| 2dy1_A | 665 | Elongation factor G; translocation, GTP complex, s | 97.22 | |
| 2z43_A | 324 | DNA repair and recombination protein RADA; archaea | 97.21 | |
| 2e87_A | 357 | Hypothetical protein PH1320; GTP-binding, GTPase, | 97.21 | |
| 2z43_A | 324 | DNA repair and recombination protein RADA; archaea | 97.2 | |
| 3b9p_A | 297 | CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc | 97.2 | |
| 1kag_A | 173 | SKI, shikimate kinase I; transferase, structural g | 97.19 | |
| 1v5w_A | 343 | DMC1, meiotic recombination protein DMC1/LIM15 hom | 97.18 | |
| 3cr8_A | 552 | Sulfate adenylyltranferase, adenylylsulfate kinase | 97.17 | |
| 3bh0_A | 315 | DNAB-like replicative helicase; ATPase, replicatio | 97.12 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 97.11 | |
| 2z4s_A | 440 | Chromosomal replication initiator protein DNAA; AA | 97.09 | |
| 3tau_A | 208 | Guanylate kinase, GMP kinase; structural genomics, | 97.06 | |
| 1f2t_A | 149 | RAD50 ABC-ATPase; DNA double-strand break repair, | 97.06 | |
| 1svm_A | 377 | Large T antigen; AAA+ fold, viral protein; HET: AT | 97.05 | |
| 1f2t_A | 149 | RAD50 ABC-ATPase; DNA double-strand break repair, | 96.98 | |
| 2p67_A | 341 | LAO/AO transport system kinase; ARGK, structural G | 96.94 | |
| 4fcw_A | 311 | Chaperone protein CLPB; AAA domain; HET: ADP; 2.35 | 96.89 | |
| 4eaq_A | 229 | DTMP kinase, thymidylate kinase; structural genomi | 96.88 | |
| 2z4s_A | 440 | Chromosomal replication initiator protein DNAA; AA | 96.88 | |
| 1rz3_A | 201 | Hypothetical protein rbstp0775; MCSG, structural g | 96.86 | |
| 1cke_A | 227 | CK, MSSA, protein (cytidine monophosphate kinase); | 96.84 | |
| 3ney_A | 197 | 55 kDa erythrocyte membrane protein; structural ge | 96.83 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 96.82 | |
| 2www_A | 349 | Methylmalonic aciduria type A protein, mitochondri | 96.82 | |
| 2qby_A | 386 | CDC6 homolog 1, cell division control protein 6 ho | 96.79 | |
| 1knq_A | 175 | Gluconate kinase; ALFA/beta structure, transferase | 96.77 | |
| 3m6a_A | 543 | ATP-dependent protease LA 1; alpha, beta, ATP-bind | 96.76 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 96.73 | |
| 3tqc_A | 321 | Pantothenate kinase; biosynthesis of cofactors, pr | 96.73 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 96.72 | |
| 1m7g_A | 211 | Adenylylsulfate kinase; APS kinase, transferase, s | 96.67 | |
| 1kag_A | 173 | SKI, shikimate kinase I; transferase, structural g | 96.63 | |
| 2pez_A | 179 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 96.6 | |
| 3cr8_A | 552 | Sulfate adenylyltranferase, adenylylsulfate kinase | 96.6 | |
| 2qt1_A | 207 | Nicotinamide riboside kinase 1; non-protein kinase | 96.59 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 96.52 | |
| 3cf0_A | 301 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 96.51 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 96.5 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 96.49 | |
| 2qor_A | 204 | Guanylate kinase; phosphotransferase, purine metab | 96.49 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 96.49 | |
| 1np6_A | 174 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.47 | |
| 2qby_A | 386 | CDC6 homolog 1, cell division control protein 6 ho | 96.47 | |
| 3qks_A | 203 | DNA double-strand break repair RAD50 ATPase; RECA- | 96.46 | |
| 1y63_A | 184 | LMAJ004144AAA protein; structural genomics, protei | 96.43 | |
| 2ga8_A | 359 | Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn | 96.39 | |
| 2ffh_A | 425 | Protein (FFH); SRP54, signal recognition particle, | 96.38 | |
| 3qks_A | 203 | DNA double-strand break repair RAD50 ATPase; RECA- | 96.35 | |
| 2yvu_A | 186 | Probable adenylyl-sulfate kinase; transferase, str | 96.31 | |
| 3llm_A | 235 | ATP-dependent RNA helicase A; alpha-beta-alpha, st | 96.31 | |
| 1m2o_B | 190 | GTP-binding protein SAR1, GTP binding protein; zin | 96.3 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 96.29 | |
| 1m2o_B | 190 | GTP-binding protein SAR1, GTP binding protein; zin | 96.26 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 96.26 | |
| 2p5t_B | 253 | PEZT; postsegregational killing system, phosphoryl | 96.25 | |
| 1j8m_F | 297 | SRP54, signal recognition 54 kDa protein; signalin | 96.25 | |
| 3llm_A | 235 | ATP-dependent RNA helicase A; alpha-beta-alpha, st | 96.25 | |
| 3bgw_A | 444 | DNAB-like replicative helicase; ATPase, replicatio | 96.24 | |
| 2q6t_A | 444 | DNAB replication FORK helicase; hydrolase; 2.90A { | 96.24 | |
| 1u94_A | 356 | RECA protein, recombinase A; homologous recombinat | 96.24 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 96.19 | |
| 4eaq_A | 229 | DTMP kinase, thymidylate kinase; structural genomi | 96.16 | |
| 2p67_A | 341 | LAO/AO transport system kinase; ARGK, structural G | 96.16 | |
| 1f6b_A | 198 | SAR1; gtpases, N-terminal helix, Mg-containing com | 96.14 | |
| 2q6t_A | 444 | DNAB replication FORK helicase; hydrolase; 2.90A { | 96.07 | |
| 2www_A | 349 | Methylmalonic aciduria type A protein, mitochondri | 96.04 | |
| 1lv7_A | 257 | FTSH; alpha/beta domain, four helix bundle, hydrol | 96.03 | |
| 3cm0_A | 186 | Adenylate kinase; ATP-binding, cytoplasm, nucleoti | 96.02 | |
| 3ice_A | 422 | Transcription termination factor RHO; transcriptio | 96.01 | |
| 3t61_A | 202 | Gluconokinase; PSI-biology, structural genomics, p | 96.0 | |
| 2i1q_A | 322 | DNA repair and recombination protein RADA; ATPase, | 95.99 | |
| 1u94_A | 356 | RECA protein, recombinase A; homologous recombinat | 95.98 | |
| 2ohf_A | 396 | Protein OLA1, GTP-binding protein 9; ATPase, GTPas | 95.97 | |
| 2pez_A | 179 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 95.95 | |
| 3ice_A | 422 | Transcription termination factor RHO; transcriptio | 95.92 | |
| 3kb2_A | 173 | SPBC2 prophage-derived uncharacterized protein YOR | 95.92 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 95.88 | |
| 3m6a_A | 543 | ATP-dependent protease LA 1; alpha, beta, ATP-bind | 95.87 | |
| 1qhx_A | 178 | CPT, protein (chloramphenicol phosphotransferase); | 95.87 | |
| 2b8t_A | 223 | Thymidine kinase; deoxyribonucleoside kinase, zinc | 95.85 | |
| 1cke_A | 227 | CK, MSSA, protein (cytidine monophosphate kinase); | 95.83 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 95.82 | |
| 2if2_A | 204 | Dephospho-COA kinase; alpha-beta protein, structur | 95.82 | |
| 2qag_A | 361 | Septin-2, protein NEDD5; cell cycle, cell division | 95.79 | |
| 1sxj_C | 340 | Activator 1 40 kDa subunit; clamp loader, processi | 95.75 | |
| 2qag_A | 361 | Septin-2, protein NEDD5; cell cycle, cell division | 95.74 | |
| 1y63_A | 184 | LMAJ004144AAA protein; structural genomics, protei | 95.72 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 95.7 | |
| 3r20_A | 233 | Cytidylate kinase; structural genomics, seattle st | 95.7 | |
| 2qor_A | 204 | Guanylate kinase; phosphotransferase, purine metab | 95.7 | |
| 1q3t_A | 236 | Cytidylate kinase; nucleotide monophosphate kinase | 95.65 | |
| 1ega_A | 301 | Protein (GTP-binding protein ERA); GTPase, RNA-bin | 95.63 | |
| 1f6b_A | 198 | SAR1; gtpases, N-terminal helix, Mg-containing com | 95.61 | |
| 2rhm_A | 193 | Putative kinase; P-loop containing nucleoside trip | 95.6 | |
| 3d8b_A | 357 | Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s | 95.59 | |
| 2ze6_A | 253 | Isopentenyl transferase; crown GALL tumor, cytokin | 95.48 | |
| 2if2_A | 204 | Dephospho-COA kinase; alpha-beta protein, structur | 95.46 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 95.45 | |
| 1gvn_B | 287 | Zeta; postsegregational killing system, plasmid; 1 | 95.44 | |
| 3cf0_A | 301 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 95.44 | |
| 1kht_A | 192 | Adenylate kinase; phosphotransferase, signaling pr | 95.43 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 95.42 | |
| 2b8t_A | 223 | Thymidine kinase; deoxyribonucleoside kinase, zinc | 95.41 | |
| 3trf_A | 185 | Shikimate kinase, SK; amino acid biosynthesis, tra | 95.38 | |
| 1m7g_A | 211 | Adenylylsulfate kinase; APS kinase, transferase, s | 95.34 | |
| 2plr_A | 213 | DTMP kinase, probable thymidylate kinase; TMP-bind | 95.31 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 95.31 | |
| 3d8b_A | 357 | Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s | 95.28 | |
| 2qp9_X | 355 | Vacuolar protein sorting-associated protein 4; ATP | 95.27 | |
| 1via_A | 175 | Shikimate kinase; structural genomics, transferase | 95.25 | |
| 2jaq_A | 205 | Deoxyguanosine kinase; transferase, deoxyribonucle | 95.24 | |
| 2v54_A | 204 | DTMP kinase, thymidylate kinase; nucleotide biosyn | 95.15 | |
| 3iij_A | 180 | Coilin-interacting nuclear ATPase protein; alpha a | 95.14 | |
| 2v1u_A | 387 | Cell division control protein 6 homolog; DNA repli | 95.1 | |
| 2c95_A | 196 | Adenylate kinase 1; transferase, AP4A, nucleotide | 95.1 | |
| 1ex7_A | 186 | Guanylate kinase; substrate-induced FIT, domain mo | 95.08 | |
| 1xjc_A | 169 | MOBB protein homolog; structural genomics, midwest | 95.05 | |
| 2bwj_A | 199 | Adenylate kinase 5; phosphoryl transfer reaction, | 95.04 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 95.0 | |
| 1aky_A | 220 | Adenylate kinase; ATP:AMP phosphotransferase, myok | 95.0 | |
| 1np6_A | 174 | Molybdopterin-guanine dinucleotide biosynthesis pr | 94.98 | |
| 1q57_A | 503 | DNA primase/helicase; dntpase, DNA replication, tr | 94.97 | |
| 2ohf_A | 396 | Protein OLA1, GTP-binding protein 9; ATPase, GTPas | 94.96 | |
| 3lw7_A | 179 | Adenylate kinase related protein (ADKA-like); AMP, | 94.92 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 94.91 | |
| 2wwf_A | 212 | Thymidilate kinase, putative; transferase, malaria | 94.89 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 94.88 | |
| 1ly1_A | 181 | Polynucleotide kinase; PNK, phosphatase, transfera | 94.88 | |
| 2ga8_A | 359 | Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn | 94.86 | |
| 2yvu_A | 186 | Probable adenylyl-sulfate kinase; transferase, str | 94.84 | |
| 1tev_A | 196 | UMP-CMP kinase; ploop, NMP binding region, LID reg | 94.83 | |
| 3cmw_A | 1706 | Protein RECA, recombinase A; homologous recombinat | 94.81 | |
| 2vli_A | 183 | Antibiotic resistance protein; transferase, tunica | 94.79 | |
| 3t61_A | 202 | Gluconokinase; PSI-biology, structural genomics, p | 94.76 | |
| 3cm0_A | 186 | Adenylate kinase; ATP-binding, cytoplasm, nucleoti | 94.75 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 94.74 | |
| 1vht_A | 218 | Dephospho-COA kinase; structural genomics, transfe | 94.74 | |
| 1nn5_A | 215 | Similar to deoxythymidylate kinase (thymidylate K; | 94.71 | |
| 2ffh_A | 425 | Protein (FFH); SRP54, signal recognition particle, | 94.69 | |
| 1gtv_A | 214 | TMK, thymidylate kinase; transferase, transferase | 94.65 | |
| 1nks_A | 194 | Adenylate kinase; thermophilic, transferase; HET: | 94.62 | |
| 1xx6_A | 191 | Thymidine kinase; NESG, northeast structural genom | 94.6 | |
| 2j9r_A | 214 | Thymidine kinase; TK1, DNK, lasso, transferase, AT | 94.58 | |
| 3umf_A | 217 | Adenylate kinase; rossmann fold, transferase; 2.05 | 94.55 |
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-73 Score=751.84 Aligned_cols=214 Identities=26% Similarity=0.392 Sum_probs=177.8
Q ss_pred eeeeccceeeeeccccccccccccCCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccC
Q 001400 816 SMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPK 895 (1085)
Q Consensus 816 ~~~~~~~~y~v~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 895 (1085)
.+.|+|++|.++.. ++.++|+||||+|+|||++||||+||||||||+++|.|... +.+|+|.|||.++
T Consensus 1076 ~I~f~nVsf~Y~~~----------~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~--p~~G~I~iDG~di 1143 (1321)
T 4f4c_A 1076 KVIFKNVRFAYPER----------PEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYD--TLGGEIFIDGSEI 1143 (1321)
T ss_dssp CEEEEEEEECCTTS----------CSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSC--CSSSEEEETTEET
T ss_pred eEEEEEEEEeCCCC----------CCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCcc--CCCCEEEECCEEh
Confidence 57788887776321 23469999999999999999999999999999999999876 5689999999987
Q ss_pred Ch---hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcc-------cccccCCCC
Q 001400 896 RQ---ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSL-------SGALIGLPG 965 (1085)
Q Consensus 896 ~~---~~~~~~~gy~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~~~~~ 965 (1085)
+. ..+|++++||||+|.+|.+ |++||+.|+.. |.+. .++.++++++..++.+. .|..++..
T Consensus 1144 ~~i~~~~lR~~i~~V~Qdp~LF~g-TIreNI~~gld---~~~~----sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~- 1214 (1321)
T 4f4c_A 1144 KTLNPEHTRSQIAIVSQEPTLFDC-SIAENIIYGLD---PSSV----TMAQVEEAARLANIHNFIAELPEGFETRVGDR- 1214 (1321)
T ss_dssp TTBCHHHHHTTEEEECSSCCCCSE-EHHHHHSSSSC---TTTS----CHHHHHHHHHHTTCHHHHHTSTTTTCSEETTT-
T ss_pred hhCCHHHHHhheEEECCCCEeeCc-cHHHHHhccCC---CCCC----CHHHHHHHHHHhCChHHHHcCcCCCCCEecCC-
Confidence 64 5678899999999999866 99999987631 2222 23457888888887543 34445543
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEecC
Q 001400 966 INGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 1045 (1085)
Q Consensus 966 ~~~LS~Gqrqrl~iA~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~g 1045 (1085)
+.+||||||||+||||||+++|+||+||||||+||+++.+.|++.|+++. +|+|+|+|+|+++ ....||+|+||+ +
T Consensus 1215 G~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~-~~~TvI~IAHRLs--Ti~~aD~I~Vld-~ 1290 (1321)
T 4f4c_A 1215 GTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAR-EGRTCIVIAHRLN--TVMNADCIAVVS-N 1290 (1321)
T ss_dssp SCSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTS-SSSEEEEECSSSS--TTTTCSEEEEES-S
T ss_pred CcccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHc-CCCEEEEeccCHH--HHHhCCEEEEEE-C
Confidence 35799999999999999999999999999999999999999999999864 6999999999987 467899999998 5
Q ss_pred cEEEEecCC
Q 001400 1046 GELIYAGPL 1054 (1085)
Q Consensus 1046 G~~~~~g~~ 1054 (1085)
|++++.|+.
T Consensus 1291 G~IvE~Gth 1299 (1321)
T 4f4c_A 1291 GTIIEKGTH 1299 (1321)
T ss_dssp SSEEEEECH
T ss_pred CEEEEECCH
Confidence 789999974
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-67 Score=692.71 Aligned_cols=215 Identities=22% Similarity=0.357 Sum_probs=170.1
Q ss_pred eeeeccceeeeeccccccccccccCCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccC
Q 001400 816 SMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPK 895 (1085)
Q Consensus 816 ~~~~~~~~y~v~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 895 (1085)
.+.++|+++.++.. ++.++|+||||+|++||++||+|+||||||||+++|+|..+ +.+|+|.+||.++
T Consensus 1030 ~i~~~~v~~~y~~~----------~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~--p~~G~I~i~g~~i 1097 (1284)
T 3g5u_A 1030 NVQFSGVVFNYPTR----------PSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYD--PMAGSVFLDGKEI 1097 (1284)
T ss_dssp CEEEEEEEBCCSCG----------GGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSC--CSEEEEESSSSCT
T ss_pred cEEEEEEEEECCCC----------CCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCCEEEECCEEc
Confidence 46677776655311 12358999999999999999999999999999999999876 5699999999987
Q ss_pred Ch---hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcc-------cccccCCCC
Q 001400 896 RQ---ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSL-------SGALIGLPG 965 (1085)
Q Consensus 896 ~~---~~~~~~~gy~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~~~~~ 965 (1085)
+. ...++.+|||+|++.++ ..||+||+.++...+ .... +.++++++..++.+. .+..++..
T Consensus 1098 ~~~~~~~~r~~i~~v~Q~~~l~-~~ti~eNi~~~~~~~---~~~~----~~i~~~~~~~~~~~~i~~l~~gldt~vge~- 1168 (1284)
T 3g5u_A 1098 KQLNVQWLRAQLGIVSQEPILF-DCSIAENIAYGDNSR---VVSY----EEIVRAAKEANIHQFIDSLPDKYNTRVGDK- 1168 (1284)
T ss_dssp TSSCHHHHTTSCEEEESSCCCC-SSBHHHHHTCCCSSC---CCCH----HHHHHHHHHHTCHHHHSSTTTGGGCBCSTT-
T ss_pred ccCCHHHHHhceEEECCCCccc-cccHHHHHhccCCCC---CCCH----HHHHHHHHHhCcHHHHHhCccccccccCCC-
Confidence 53 34677899999999876 469999998753211 1111 234455555555433 23334433
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEecC
Q 001400 966 INGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 1045 (1085)
Q Consensus 966 ~~~LS~Gqrqrl~iA~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~g 1045 (1085)
+.+||||||||++|||||+++|+||+|||||||||+.+++.|++.|++. .+|+|||++|||++. + ..||++++|+ +
T Consensus 1169 G~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~-~~~~tvi~isH~l~~-i-~~~dri~vl~-~ 1244 (1284)
T 3g5u_A 1169 GTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKA-REGRTCIVIAHRLST-I-QNADLIVVIQ-N 1244 (1284)
T ss_dssp SCSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHH-SSSSCEEEECSCTTG-G-GSCSEEEEEE-T
T ss_pred CCccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHh-CCCCEEEEEecCHHH-H-HcCCEEEEEE-C
Confidence 3579999999999999999999999999999999999999999999985 469999999999873 4 6699999998 5
Q ss_pred cEEEEecCCC
Q 001400 1046 GELIYAGPLG 1055 (1085)
Q Consensus 1046 G~~~~~g~~~ 1055 (1085)
|++++.|+..
T Consensus 1245 G~i~~~g~~~ 1254 (1284)
T 3g5u_A 1245 GKVKEHGTHQ 1254 (1284)
T ss_dssp BEEEEEECHH
T ss_pred CEEEEECCHH
Confidence 7999998753
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-59 Score=563.16 Aligned_cols=188 Identities=25% Similarity=0.279 Sum_probs=157.5
Q ss_pred EeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCChhcccceEEEEccCCCCCCCCCHHHHH
Q 001400 844 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLESL 923 (1085)
Q Consensus 844 ~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gy~~Q~~~~~~~~tv~e~l 923 (1085)
.|+++||+|++||++||+||||||||||+++|+|... +.+|+|.+ .+.+||++|++...+.+||.|++
T Consensus 371 ~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~--p~~G~I~~----------~~~i~~v~Q~~~~~~~~tv~e~~ 438 (607)
T 3bk7_A 371 KLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEE--PTEGKVEW----------DLTVAYKPQYIKAEYEGTVYELL 438 (607)
T ss_dssp EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSC--CSBSCCCC----------CCCEEEECSSCCCCCSSBHHHHH
T ss_pred EEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEE----------eeEEEEEecCccCCCCCcHHHHH
Confidence 5789999999999999999999999999999999876 45788865 23589999998777889999988
Q ss_pred HHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHH
Q 001400 924 LFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARA 1003 (1085)
Q Consensus 924 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEPtsgLD~~~ 1003 (1085)
.+..... ....+.++++++.+++.+..+..+ .+|||||||||+|||||+.+|+||||||||+|||+.+
T Consensus 439 ~~~~~~~-------~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~ 506 (607)
T 3bk7_A 439 SKIDSSK-------LNSNFYKTELLKPLGIIDLYDRNV-----EDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQ 506 (607)
T ss_dssp HHHHHHH-------HHCHHHHHHTHHHHTCTTTTTSBG-----GGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHH
T ss_pred HhhhccC-------CCHHHHHHHHHHHcCCchHhcCCh-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHH
Confidence 6531100 011245788999999987776654 4799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH-HCCceEEEEecCccHHHHHhcCEEEEEec-CcEEEEecCCCC
Q 001400 1004 AAIVMRTVRNIV-NTGRTIVCTIHQPSIDIFESFDELLFMKR-GGELIYAGPLGS 1056 (1085)
Q Consensus 1004 ~~~i~~~l~~~~-~~g~tvi~~~H~~~~~~~~~~d~il~l~~-gG~~~~~g~~~~ 1056 (1085)
+..++++|++++ +.|.|||++|||++ .+...+|++++|++ .|+++..|+..+
T Consensus 507 ~~~l~~~l~~l~~~~g~tvi~vsHd~~-~~~~~adrv~vl~~~~g~~~~~g~p~~ 560 (607)
T 3bk7_A 507 RLAVSRAIRHLMEKNEKTALVVEHDVL-MIDYVSDRLIVFEGEPGRHGRALPPMG 560 (607)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECCCEE
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEcCCcceEEecCCHHH
Confidence 999999999986 46999999999986 47778999999973 267777887754
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-58 Score=555.37 Aligned_cols=188 Identities=26% Similarity=0.297 Sum_probs=155.8
Q ss_pred EeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCChhcccceEEEEccCCCCCCCCCHHHHH
Q 001400 844 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLESL 923 (1085)
Q Consensus 844 ~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gy~~Q~~~~~~~~tv~e~l 923 (1085)
.|+++||+|++||++||+||||||||||+++|+|... +.+|+|.+ ...+||++|++...+.+||.|++
T Consensus 301 ~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~--p~~G~i~~----------~~~i~~v~Q~~~~~~~~tv~~~~ 368 (538)
T 1yqt_A 301 RLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEE--PTEGKIEW----------DLTVAYKPQYIKADYEGTVYELL 368 (538)
T ss_dssp EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSC--CSBCCCCC----------CCCEEEECSSCCCCCSSBHHHHH
T ss_pred EEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEE----------CceEEEEecCCcCCCCCcHHHHH
Confidence 5889999999999999999999999999999999866 45788865 23589999998777889999887
Q ss_pred HHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHH
Q 001400 924 LFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARA 1003 (1085)
Q Consensus 924 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEPtsgLD~~~ 1003 (1085)
........ ...+.++++++.+++.+..+..+ ..|||||||||+|||+|+.+|+||||||||+|||+.+
T Consensus 369 ~~~~~~~~-------~~~~~~~~~l~~~~l~~~~~~~~-----~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~ 436 (538)
T 1yqt_A 369 SKIDASKL-------NSNFYKTELLKPLGIIDLYDREV-----NELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQ 436 (538)
T ss_dssp HHHHHHHH-------TCHHHHHHTTTTTTCGGGTTSBG-----GGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHH
T ss_pred HhhhccCC-------CHHHHHHHHHHHcCChhhhcCCh-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHH
Confidence 64311110 01234677888888876665543 4799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH-CCceEEEEecCccHHHHHhcCEEEEEec-CcEEEEecCCCC
Q 001400 1004 AAIVMRTVRNIVN-TGRTIVCTIHQPSIDIFESFDELLFMKR-GGELIYAGPLGS 1056 (1085)
Q Consensus 1004 ~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~il~l~~-gG~~~~~g~~~~ 1056 (1085)
+..+++.|+++++ .|.|||++|||++ .+...||++++|++ .|+++..|+..+
T Consensus 437 ~~~i~~~l~~l~~~~g~tvi~vsHd~~-~~~~~~drv~vl~~~~~~~~~~g~~~~ 490 (538)
T 1yqt_A 437 RLAVSRAIRHLMEKNEKTALVVEHDVL-MIDYVSDRLMVFEGEPGKYGRALPPMG 490 (538)
T ss_dssp HHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECCCEE
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEeCCcceEeecCCHHH
Confidence 9999999999864 5999999999986 47788999999984 267778888754
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-57 Score=544.33 Aligned_cols=202 Identities=23% Similarity=0.238 Sum_probs=161.2
Q ss_pred EeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCChhcccceEEEEccCCCCCCCCCHHHHH
Q 001400 844 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLESL 923 (1085)
Q Consensus 844 ~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gy~~Q~~~~~~~~tv~e~l 923 (1085)
.|+++|++|++||++||+||||||||||+++|+|... +.+|+|.+++. .++|++|+....+..||+|++
T Consensus 283 ~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~~~---------~i~~~~q~~~~~~~~tv~~~l 351 (538)
T 3ozx_A 283 QLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEIT--ADEGSVTPEKQ---------ILSYKPQRIFPNYDGTVQQYL 351 (538)
T ss_dssp EEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSC--CSBCCEESSCC---------CEEEECSSCCCCCSSBHHHHH
T ss_pred EEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCe---------eeEeechhcccccCCCHHHHH
Confidence 4677899999999999999999999999999999876 46899987653 479999987766789999999
Q ss_pred HHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHH
Q 001400 924 LFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARA 1003 (1085)
Q Consensus 924 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEPtsgLD~~~ 1003 (1085)
.+....... . ....++++++.+++.+..+..+ .+|||||||||+|||||+.+|+||||||||+|||+.+
T Consensus 352 ~~~~~~~~~-~-----~~~~~~~~l~~~~l~~~~~~~~-----~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~ 420 (538)
T 3ozx_A 352 ENASKDALS-T-----SSWFFEEVTKRLNLHRLLESNV-----NDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEE 420 (538)
T ss_dssp HHHCSSTTC-T-----TSHHHHHTTTTTTGGGCTTSBG-----GGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHH
T ss_pred HHhhhhccc-h-----hHHHHHHHHHHcCCHHHhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHH
Confidence 864211100 1 1234678888888887766654 5799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH-CCceEEEEecCccHHHHHhcCEEEEEecC-cEEEEecCCCCchHHHHHHHHhc
Q 001400 1004 AAIVMRTVRNIVN-TGRTIVCTIHQPSIDIFESFDELLFMKRG-GELIYAGPLGSKSCELIKYFEVE 1068 (1085)
Q Consensus 1004 ~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~il~l~~g-G~~~~~g~~~~~~~~~~~~~~~~ 1068 (1085)
+..+++.|+++++ .|.|||++|||++ .+...|||+++|+.+ |.....++.......+.+|+..+
T Consensus 421 ~~~i~~~l~~l~~~~g~tvi~vsHdl~-~~~~~aDri~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (538)
T 3ozx_A 421 RYIVAKAIKRVTRERKAVTFIIDHDLS-IHDYIADRIIVFKGEPEKAGLATSPVTLKTGMNEFLREL 486 (538)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECCCEEHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEeCCcceeccCCChHHHHHHHHHHHhhc
Confidence 9999999999975 5899999999986 477789999999842 34445555443334455565544
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-56 Score=550.15 Aligned_cols=214 Identities=21% Similarity=0.236 Sum_probs=136.5
Q ss_pred ceeecccceeeEeCCeEEEEeCCCCCChhHHH---------------------HHHHhhhCCCCc----eeeEEEECCcc
Q 001400 147 KLTILDDLSGIIRPSRLTLLLGPPSSGKTTLL---------------------LALAGRLGHHLQ----VSGKITYNGHG 201 (1085)
Q Consensus 147 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL---------------------~~L~G~l~~~~~----~~G~i~~~G~~ 201 (1085)
..++|+|||++|++||+++|+||||||||||| ++++|...++.. ..|.|.++|.+
T Consensus 30 ~~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~ 109 (670)
T 3ux8_A 30 RAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKT 109 (670)
T ss_dssp CSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC
T ss_pred CccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCch
Confidence 34689999999999999999999999999998 777777666421 25677888765
Q ss_pred CCCCCCCceEEEEccCCC-------------------CCCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCc
Q 001400 202 FKEFVPPRTSAYVSQQDW-------------------QVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDE 262 (1085)
Q Consensus 202 ~~~~~~~~~~~yv~Q~d~-------------------~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 262 (1085)
.... +++.++||+|... .++.+||+||+.+.......... .+.. ...
T Consensus 110 ~~~~-~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~----~~~~------~~~--- 175 (670)
T 3ux8_A 110 TSRN-PRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKE----AQIA------RLI--- 175 (670)
T ss_dssp ------CCBHHHHTTCC-------------------------CC------------------------------------
T ss_pred hhcc-chhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhh----hHHH------HHH---
Confidence 4322 2344556655432 24678999999874321100000 0000 000
Q ss_pred hHHHHHHHhhhcCcchhHHHHHHHHHhCCccc-ccccccCcccccCchhhhhHHHHHHHHhCCCc--EeEEeCCCCCCCH
Q 001400 263 DLDIFMKSFALGGQKTSLVVEYIMKILGLDTC-ADTLVGDEMLKGISGGQKKRLTTGELLVGPAR--VLFMDEISNGLDS 339 (1085)
Q Consensus 263 d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~-~dt~vg~~~~~~LSGGqkqRvsia~al~~~p~--vlllDEptsgLD~ 339 (1085)
..+... ...+++.+||.+. .|..+ ..|||||||||+|||||+.+|+ +|+|||||+|||+
T Consensus 176 ------------~~~~~~-~~~~l~~~gL~~~~~~~~~-----~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~ 237 (670)
T 3ux8_A 176 ------------LREIRD-RLGFLQNVGLDYLTLSRSA-----GTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQ 237 (670)
T ss_dssp ---------------CHH-HHHHHHHTTCTTCCTTCBG-----GGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCG
T ss_pred ------------HHHHHH-HHHHHHHcCCchhhhcCCc-----ccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCH
Confidence 000011 2246889999764 45554 4699999999999999999988 9999999999999
Q ss_pred HHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEe------cCCeEEEecChhhH
Q 001400 340 STTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILL------SEGQIVYQGPRVSV 395 (1085)
Q Consensus 340 ~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L------~~G~iv~~G~~~~~ 395 (1085)
.++.++++.|+++.+. +.+|+.++|+...+ ..||+|++| ++|++++.|+++++
T Consensus 238 ~~~~~l~~~l~~l~~~--g~tvi~vtHd~~~~-~~~d~ii~l~~g~~~~~G~i~~~g~~~~~ 296 (670)
T 3ux8_A 238 RDNDRLIATLKSMRDL--GNTLIVVEHDEDTM-LAADYLIDIGPGAGIHGGEVVAAGTPEEV 296 (670)
T ss_dssp GGHHHHHHHHHHHHHT--TCEEEEECCCHHHH-HHCSEEEEECSSSGGGCCSEEEEECHHHH
T ss_pred HHHHHHHHHHHHHHHc--CCEEEEEeCCHHHH-hhCCEEEEecccccccCCEEEEecCHHHH
Confidence 9999999999998753 45566688888765 569999999 89999999988765
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-56 Score=555.14 Aligned_cols=184 Identities=20% Similarity=0.299 Sum_probs=149.6
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCCCceEEEEccCC-CCCCCCCH
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQD-WQVAEMTV 226 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~~~~~~yv~Q~d-~~~~~lTV 226 (1085)
+.+|+|+|+.|++|++++|+|||||||||||++|+| |+| +|.+.. ....++|++|+. ..++.+||
T Consensus 448 ~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag---------G~i--~g~~~~---~~~~~~~v~q~~~~~~~~ltv 513 (986)
T 2iw3_A 448 KILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN---------GQV--DGFPTQ---EECRTVYVEHDIDGTHSDTSV 513 (986)
T ss_dssp EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH---------TCS--TTCCCT---TTSCEEETTCCCCCCCTTSBH
T ss_pred EEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC---------CCc--CCCccc---cceeEEEEcccccccccCCcH
Confidence 469999999999999999999999999999999995 222 343321 112478999874 66888999
Q ss_pred HHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCc-ccccccccCcccc
Q 001400 227 RETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLD-TCADTLVGDEMLK 305 (1085)
Q Consensus 227 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~vg~~~~~ 305 (1085)
.|++.+ ...+ . ..+++++++.+||+ +..+..++
T Consensus 514 ~e~l~~--~~~~--~-------------------------------------~~~v~~~L~~lgL~~~~~~~~~~----- 547 (986)
T 2iw3_A 514 LDFVFE--SGVG--T-------------------------------------KEAIKDKLIEFGFTDEMIAMPIS----- 547 (986)
T ss_dssp HHHHHT--TCSS--C-------------------------------------HHHHHHHHHHTTCCHHHHHSBGG-----
T ss_pred HHHHHH--hhcC--H-------------------------------------HHHHHHHHHHcCCChhhhcCCcc-----
Confidence 999975 1110 0 12367889999994 55666554
Q ss_pred cCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEecCCe
Q 001400 306 GISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQ 385 (1085)
Q Consensus 306 ~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~~G~ 385 (1085)
.|||||||||+||+||+.+|++|||||||+|||+.++.++.+.|++ . +++++.++|+..++.+++|+|++|++|+
T Consensus 548 ~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~----~-g~tvIivSHdl~~l~~~adrii~L~~G~ 622 (986)
T 2iw3_A 548 ALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT----C-GITSITISHDSVFLDNVCEYIINYEGLK 622 (986)
T ss_dssp GCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH----S-CSEEEEECSCHHHHHHHCSEEEEEETTE
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh----C-CCEEEEEECCHHHHHHhCCEEEEEECCe
Confidence 6999999999999999999999999999999999999999999987 2 4456668899999999999999999999
Q ss_pred EE-EecChhhHH
Q 001400 386 IV-YQGPRVSVL 396 (1085)
Q Consensus 386 iv-~~G~~~~~~ 396 (1085)
++ +.|+.+++.
T Consensus 623 iv~~~G~~~e~~ 634 (986)
T 2iw3_A 623 LRKYKGNFTEFV 634 (986)
T ss_dssp EEEEESCHHHHH
T ss_pred eecCCCCHHHHH
Confidence 97 789876653
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-55 Score=534.88 Aligned_cols=201 Identities=18% Similarity=0.167 Sum_probs=159.5
Q ss_pred EEeeeeeEEEeCC-----eEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCChhcccceEEEEccCCCCCCCC
Q 001400 843 QLLVNVTGAFRPG-----VLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGL 917 (1085)
Q Consensus 843 ~~L~~vs~~i~~G-----e~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gy~~Q~~~~~~~~ 917 (1085)
.+++++||++.+| |++||+||||||||||+++|+|... +.+|+. . ....++|++|+.......
T Consensus 361 ~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~--p~~G~~------~----~~~~i~~~~q~~~~~~~~ 428 (608)
T 3j16_B 361 KTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALK--PDEGQD------I----PKLNVSMKPQKIAPKFPG 428 (608)
T ss_dssp EECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSC--CSBCCC------C----CSCCEEEECSSCCCCCCS
T ss_pred cccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCC--CCCCcC------c----cCCcEEEecccccccCCc
Confidence 4677889988888 7899999999999999999999876 346642 1 124589999987766678
Q ss_pred CHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCC
Q 001400 918 TVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTS 997 (1085)
Q Consensus 918 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEPts 997 (1085)
||+|++.... +.. .. ....++++++.+++.+..+..+ .+|||||||||+|||||+.+|+||||||||+
T Consensus 429 tv~e~~~~~~--~~~--~~---~~~~~~~~l~~l~l~~~~~~~~-----~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~ 496 (608)
T 3j16_B 429 TVRQLFFKKI--RGQ--FL---NPQFQTDVVKPLRIDDIIDQEV-----QHLSGGELQRVAIVLALGIPADIYLIDEPSA 496 (608)
T ss_dssp BHHHHHHHHC--SST--TT---SHHHHHHTHHHHTSTTTSSSBS-----SSCCHHHHHHHHHHHHTTSCCSEEEECCTTT
T ss_pred cHHHHHHHHh--hcc--cc---cHHHHHHHHHHcCChhhhcCCh-----hhCCHHHHHHHHHHHHHHhCCCEEEEECCCC
Confidence 9999875422 111 11 1234678899999988777654 5799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHH-HCCceEEEEecCccHHHHHhcCEEEEEecC-cEEEEecCCCCchHHHHHHHHhc
Q 001400 998 GLDARAAAIVMRTVRNIV-NTGRTIVCTIHQPSIDIFESFDELLFMKRG-GELIYAGPLGSKSCELIKYFEVE 1068 (1085)
Q Consensus 998 gLD~~~~~~i~~~l~~~~-~~g~tvi~~~H~~~~~~~~~~d~il~l~~g-G~~~~~g~~~~~~~~~~~~~~~~ 1068 (1085)
|||+.++..++++|+++. +.|.|||++|||++ .+...+||+++|+++ |+++..|+..+.......+.+.+
T Consensus 497 gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~-~~~~~aDrvivl~~~~g~~~~~g~p~~~~~~~~~~~~~~ 568 (608)
T 3j16_B 497 YLDSEQRIICSKVIRRFILHNKKTAFIVEHDFI-MATYLADKVIVFEGIPSKNAHARAPESLLTGCNRFLKNL 568 (608)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEECEEETTTEEECCCCEEHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEeCCCCeEEecCChHHHhhhhhHHHHhc
Confidence 999999999999999986 45999999999986 477889999999842 78899998766433333444444
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-42 Score=431.11 Aligned_cols=197 Identities=26% Similarity=0.407 Sum_probs=143.7
Q ss_pred EeeeeeEEEeCCeEEEEEccCCCChhHHH---------hhhhCCCC--C--Ceee------eEEEEcCccCChhc-----
Q 001400 844 LLVNVTGAFRPGVLTALVGVSGAGKTTLM---------DVLAGRKT--G--GIIE------GDIYISGYPKRQET----- 899 (1085)
Q Consensus 844 ~L~~vs~~i~~Ge~~al~G~nGaGKSTLl---------~~l~g~~~--~--~~~~------G~i~i~g~~~~~~~----- 899 (1085)
.|+|||++|++|+++||+|+||||||||+ +.+.+... + .... +-+.+++.++....
T Consensus 599 ~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~idq~pig~~~rs~~a 678 (916)
T 3pih_A 599 NLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQSPIGRTPRSNPA 678 (916)
T ss_dssp TCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEEECSCCCCCCTTCCHH
T ss_pred cccccceEEcCCcEEEEEccCCCChhhhHHHHHHHHHHHHhccccccccccccccccccccceEeecccccccccccccc
Confidence 47899999999999999999999999997 33333211 1 0122 33555554421100
Q ss_pred ---------------------------------------ccceEEEEccCCCCCC-------------------------
Q 001400 900 ---------------------------------------FARISGYCEQNDIHSP------------------------- 915 (1085)
Q Consensus 900 ---------------------------------------~~~~~gy~~Q~~~~~~------------------------- 915 (1085)
..+..||+.++..++|
T Consensus 679 t~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~g~r~~~e~l~i~~~g 758 (916)
T 3pih_A 679 TYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITYKG 758 (916)
T ss_dssp HHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTTTSCBCTTGGGCCBTT
T ss_pred chhhhHHHHHHHhccchHHHhcccccccccccccccccccccCcceEEEeeeccCcceeecccccccccchhhhhhhhcc
Confidence 0012467777655544
Q ss_pred -------CCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCC-
Q 001400 916 -------GLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANP- 987 (1085)
Q Consensus 916 -------~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p- 987 (1085)
.+||.|++.|.... .....+.++++.++|.... .+.+ +.+|||||||||+|||||+++|
T Consensus 759 ~~i~~vl~~tv~eal~f~~~~---------~~~~~~~~~L~~vGL~~~~---lgq~-~~~LSGGErQRV~LAraL~~~p~ 825 (916)
T 3pih_A 759 KNISDILDMTVDEALEFFKNI---------PSIKRTLQVLHDVGLGYVK---LGQP-ATTLSGGEAQRIKLASELRKRDT 825 (916)
T ss_dssp BCHHHHHSSBHHHHHHHTTTC---------HHHHHHHHHHHHTTGGGSB---TTCC-STTCCHHHHHHHHHHHHHTSCCC
T ss_pred CCHHHHhhCCHHHHHHHHhcc---------hhHHHHHHHHHHcCCchhh---ccCC-ccCCCHHHHHHHHHHHHHhhCCC
Confidence 36788888764311 1123456888888886432 1222 3579999999999999999876
Q ss_pred --CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEe-----cCcEEEEecCCC
Q 001400 988 --SIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMK-----RGGELIYAGPLG 1055 (1085)
Q Consensus 988 --~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~-----~gG~~~~~g~~~ 1055 (1085)
+||||||||+|||+.+.+.+++.|++++++|.|||+|+||++ ..+.||++++|. +||++++.|+..
T Consensus 826 ~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~--~i~~ADrIivLgp~gg~~~G~Iv~~Gtpe 898 (916)
T 3pih_A 826 GRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLD--VIKNADHIIDLGPEGGKEGGYIVATGTPE 898 (916)
T ss_dssp SSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH--HHTTCSEEEEEESSSGGGCCEEEEEESHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--HHHhCCEEEEecCCCCCCCCEEEEEcCHH
Confidence 799999999999999999999999999888999999999975 557799999993 479999999864
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-42 Score=387.04 Aligned_cols=203 Identities=25% Similarity=0.315 Sum_probs=178.3
Q ss_pred CeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCChh------cccceEEEEccCCCCC
Q 001400 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE------TFARISGYCEQNDIHS 914 (1085)
Q Consensus 841 ~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~------~~~~~~gy~~Q~~~~~ 914 (1085)
...+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.++|.++... ..++.+||++|++.++
T Consensus 40 ~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~--p~~G~I~i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~l~ 117 (366)
T 3tui_C 40 TIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER--PTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLL 117 (366)
T ss_dssp EEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECSSCCHHHHHHHHTTEEEECSSCCCC
T ss_pred CeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCC--CCceEEEECCEECCcCCHHHHHHHhCcEEEEeCCCccC
Confidence 3679999999999999999999999999999999999876 5699999999986431 2457799999999999
Q ss_pred CCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Q 001400 915 PGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDE 994 (1085)
Q Consensus 915 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDE 994 (1085)
+.+||+||+.|+...+. ....+.++.++++++.++|.+..+... .+|||||||||+|||||+.+|+||||||
T Consensus 118 ~~~TV~env~~~~~~~~---~~~~~~~~~v~~lL~~vgL~~~~~~~~-----~~LSGGqkQRVaIArAL~~~P~lLLlDE 189 (366)
T 3tui_C 118 SSRTVFGNVALPLELDN---TPKDEVKRRVTELLSLVGLGDKHDSYP-----SNLSGGQKQRVAIARALASNPKVLLCDQ 189 (366)
T ss_dssp TTSCHHHHHHHHHHHSC---CCHHHHHHHHHHHHHHHTCGGGTTCCT-----TTSCHHHHHHHHHHHHTTTCCSEEEEES
T ss_pred CCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCchHhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 99999999999865542 234556677899999999988777653 5899999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHH-CCceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCC
Q 001400 995 PTSGLDARAAAIVMRTVRNIVN-TGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1085)
Q Consensus 995 PtsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~ 1055 (1085)
||||||+.++..++++|+++.+ .|.|||++|||++ .+...||++++|++ |++++.|+..
T Consensus 190 PTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~-~~~~~aDrv~vl~~-G~iv~~g~~~ 249 (366)
T 3tui_C 190 ATSALDPATTRSILELLKDINRRLGLTILLITHEMD-VVKRICDCVAVISN-GELIEQDTVS 249 (366)
T ss_dssp TTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHH-HHHHHCSEEEEEET-TEEEECCBHH
T ss_pred CCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEEcCHH
Confidence 9999999999999999999975 4999999999986 47788999999985 7999999764
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-42 Score=385.74 Aligned_cols=207 Identities=21% Similarity=0.316 Sum_probs=180.9
Q ss_pred ceeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCC------CceEEEEccCCCC
Q 001400 147 KLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP------PRTSAYVSQQDWQ 220 (1085)
Q Consensus 147 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~------~~~~~yv~Q~d~~ 220 (1085)
...+|+|||+.|++||+++|+|||||||||||++|+|+++|+ +|+|.++|.++..... ++.+|||+|++.+
T Consensus 40 ~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~---~G~I~i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~l 116 (366)
T 3tui_C 40 TIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT---EGSVLVDGQELTTLSESELTKARRQIGMIFQHFNL 116 (366)
T ss_dssp EEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECSSCCHHHHHHHHTTEEEECSSCCC
T ss_pred CeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHHHHHHHhCcEEEEeCCCcc
Confidence 467999999999999999999999999999999999999886 9999999999876532 3579999999999
Q ss_pred CCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCccccccccc
Q 001400 221 VAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVG 300 (1085)
Q Consensus 221 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 300 (1085)
++.+||+||+.|+.+..+... .+...+++++|+.+||.+.++..+
T Consensus 117 ~~~~TV~env~~~~~~~~~~~----------------------------------~~~~~~v~~lL~~vgL~~~~~~~~- 161 (366)
T 3tui_C 117 LSSRTVFGNVALPLELDNTPK----------------------------------DEVKRRVTELLSLVGLGDKHDSYP- 161 (366)
T ss_dssp CTTSCHHHHHHHHHHHSCCCH----------------------------------HHHHHHHHHHHHHHTCGGGTTCCT-
T ss_pred CCCCCHHHHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCCchHhcCCh-
Confidence 999999999999866543210 011235888999999998877655
Q ss_pred CcccccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEE
Q 001400 301 DEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVIL 380 (1085)
Q Consensus 301 ~~~~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~ 380 (1085)
.+|||||||||+|||||+.+|++|||||||||||+.++.+|++.|+++.+..+ ++|+.++|+..++..+||+|++
T Consensus 162 ----~~LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g-~Tii~vTHdl~~~~~~aDrv~v 236 (366)
T 3tui_C 162 ----SNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLG-LTILLITHEMDVVKRICDCVAV 236 (366)
T ss_dssp ----TTSCHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSC-CEEEEEESCHHHHHHHCSEEEE
T ss_pred ----hhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCC-CEEEEEecCHHHHHHhCCEEEE
Confidence 46999999999999999999999999999999999999999999999976544 5566688999999999999999
Q ss_pred ecCCeEEEecChhhHH
Q 001400 381 LSEGQIVYQGPRVSVL 396 (1085)
Q Consensus 381 L~~G~iv~~G~~~~~~ 396 (1085)
|++|++++.|+++++.
T Consensus 237 l~~G~iv~~g~~~ev~ 252 (366)
T 3tui_C 237 ISNGELIEQDTVSEVF 252 (366)
T ss_dssp EETTEEEECCBHHHHH
T ss_pred EECCEEEEEcCHHHHH
Confidence 9999999999998875
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-41 Score=367.68 Aligned_cols=204 Identities=25% Similarity=0.390 Sum_probs=173.1
Q ss_pred eEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCChh---c----ccceEEEEccCCCCC
Q 001400 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE---T----FARISGYCEQNDIHS 914 (1085)
Q Consensus 842 ~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~---~----~~~~~gy~~Q~~~~~ 914 (1085)
..+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.++|.++... . .++.+||++|++.++
T Consensus 18 ~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~ 95 (235)
T 3tif_A 18 IYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDK--PTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLI 95 (235)
T ss_dssp EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCC
T ss_pred eeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCceEEEECCEEcccCCHHHHHHHhhccEEEEecCCccC
Confidence 579999999999999999999999999999999999876 5699999999876431 1 234699999999999
Q ss_pred CCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCccc-ccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q 001400 915 PGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLS-GALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMD 993 (1085)
Q Consensus 915 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlD 993 (1085)
+.+||+||+.++...+........+..+.+.++++.+++.+.. +.. +.+||||||||++|||||+.+|++||||
T Consensus 96 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LSgGq~QRv~iAral~~~p~llllD 170 (235)
T 3tif_A 96 PLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHK-----PNQLSGGQQQRVAIARALANNPPIILAD 170 (235)
T ss_dssp TTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCC-----GGGSCHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred CCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCC-----hhhCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 9999999999876543222233455566788999999997643 443 3579999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHC-CceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCC
Q 001400 994 EPTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1085)
Q Consensus 994 EPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~ 1055 (1085)
|||+|||+.++..+++.|+++.++ |+|||++|||++ ..+.||++++|++ |+++..++..
T Consensus 171 EPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~--~~~~~d~i~~l~~-G~i~~~~~~~ 230 (235)
T 3tif_A 171 QPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDIN--VARFGERIIYLKD-GEVEREEKLR 230 (235)
T ss_dssp STTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHH--HHTTSSEEEEEET-TEEEEEEECC
T ss_pred CCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHH--HHHhCCEEEEEEC-CEEEEEcChh
Confidence 999999999999999999999765 999999999975 4578999999985 7899888764
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-42 Score=388.39 Aligned_cols=212 Identities=26% Similarity=0.364 Sum_probs=184.7
Q ss_pred cccccccCCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCChh-cccceEEEEccCC
Q 001400 833 KQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE-TFARISGYCEQND 911 (1085)
Q Consensus 833 ~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~-~~~~~~gy~~Q~~ 911 (1085)
+++.+.+++..+|+||||+|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++... ..++.+||++|++
T Consensus 7 ~~l~~~yg~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~--p~~G~I~i~G~~~~~~~~~~r~ig~VfQ~~ 84 (381)
T 3rlf_A 7 QNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLET--ITSGDLFIGEKRMNDTPPAERGVGMVFQSY 84 (381)
T ss_dssp EEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECTTCCGGGSCEEEECTTC
T ss_pred EeEEEEECCEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCC--CCCeEEEECCEECCCCCHHHCCEEEEecCC
Confidence 344445567889999999999999999999999999999999999877 5699999999986532 3356799999999
Q ss_pred CCCCCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEE
Q 001400 912 IHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVF 991 (1085)
Q Consensus 912 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~ill 991 (1085)
.++|.+||+||+.|+...+. ....+.++.++++++.+++.++.+... .+|||||||||+|||||+.+|+|||
T Consensus 85 ~l~p~ltV~eni~~~~~~~~---~~~~~~~~~v~~~l~~~~L~~~~~r~p-----~~LSGGqrQRVaiArAL~~~P~lLL 156 (381)
T 3rlf_A 85 ALYPHLSVAENMSFGLKLAG---AKKEVINQRVNQVAEVLQLAHLLDRKP-----KALSGGQRQRVAIGRTLVAEPSVFL 156 (381)
T ss_dssp CCCTTSCHHHHHTHHHHHTT---CCHHHHHHHHHHHHHHTTCGGGTTCCG-----GGSCHHHHHHHHHHHHHHHCCSEEE
T ss_pred cCCCCCCHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchhhcCCh-----hHCCHHHHHHHHHHHHHHcCCCEEE
Confidence 99999999999999876542 344556677899999999998877654 5899999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHC-CceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCCC
Q 001400 992 MDEPTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGS 1056 (1085)
Q Consensus 992 lDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~~ 1056 (1085)
||||||+||+..+..+++.|+++.++ |.|||++|||++ ++...+|++++|++ |+++..|+..+
T Consensus 157 LDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~~aDri~vl~~-G~i~~~g~~~~ 220 (381)
T 3rlf_A 157 LDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLDA-GRVAQVGKPLE 220 (381)
T ss_dssp EESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHH-HHHHHCSEEEEEET-TEEEEEECHHH
T ss_pred EECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEEeCHHH
Confidence 99999999999999999999999755 999999999986 57888999999985 79999987643
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-42 Score=387.39 Aligned_cols=213 Identities=24% Similarity=0.379 Sum_probs=182.3
Q ss_pred ccccccccCCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccC----Ch-hcccceEEE
Q 001400 832 LKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPK----RQ-ETFARISGY 906 (1085)
Q Consensus 832 ~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~----~~-~~~~~~~gy 906 (1085)
++++++.+++..+|+||||+|++||+++|+|||||||||||++|+|... +.+|+|.++|.++ .. ...++.+||
T Consensus 7 i~~ls~~y~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~--p~~G~I~i~G~~i~~~~~~~~~~~r~ig~ 84 (359)
T 3fvq_A 7 IGHLSKSFQNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQ--PDSGEISLSGKTIFSKNTNLPVRERRLGY 84 (359)
T ss_dssp EEEEEEEETTEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSC--CSEEEEEETTEEEESSSCBCCGGGSCCEE
T ss_pred EEeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCC--CCCcEEEECCEECcccccccchhhCCEEE
Confidence 3444445567889999999999999999999999999999999999877 5699999999875 21 234577999
Q ss_pred EccCCCCCCCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcC
Q 001400 907 CEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVAN 986 (1085)
Q Consensus 907 ~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~ 986 (1085)
++|++.++|.+||+||+.|+...+. ....+.++.++++++.++|.++.+... .+|||||||||+|||||+.+
T Consensus 85 vfQ~~~l~p~ltV~eni~~~l~~~~---~~~~~~~~~v~~~l~~~gL~~~~~r~~-----~~LSGGq~QRValArAL~~~ 156 (359)
T 3fvq_A 85 LVQEGVLFPHLTVYRNIAYGLGNGK---GRTAQERQRIEAMLELTGISELAGRYP-----HELSGGQQQRAALARALAPD 156 (359)
T ss_dssp ECTTCCCCTTSCHHHHHHTTSTTSS---CCSHHHHHHHHHHHHHHTCGGGTTSCG-----GGSCHHHHHHHHHHHHHTTC
T ss_pred EeCCCcCCCCCCHHHHHHHHHHHcC---CChHHHHHHHHHHHHHcCCchHhcCCh-----hhCCHHHHHHHHHHHHHHcC
Confidence 9999999999999999999765432 233455667899999999998887754 57999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHH-HCCceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCCC
Q 001400 987 PSIVFMDEPTSGLDARAAAIVMRTVRNIV-NTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGS 1056 (1085)
Q Consensus 987 p~illlDEPtsgLD~~~~~~i~~~l~~~~-~~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~~ 1056 (1085)
|+||||||||||||+..+..+++.|+++. +.|.|||++|||++ ++...|||+++|++ |+++..|+..+
T Consensus 157 P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~-ea~~~aDri~vl~~-G~i~~~g~~~e 225 (359)
T 3fvq_A 157 PELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDRE-EALQYADRIAVMKQ-GRILQTASPHE 225 (359)
T ss_dssp CSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHH-HHHHHCSEEEEEET-TEEEEEECHHH
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHHCCEEEEEEC-CEEEEEeCHHH
Confidence 99999999999999999999999888775 46999999999986 57788999999985 79999997643
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-41 Score=370.44 Aligned_cols=207 Identities=29% Similarity=0.377 Sum_probs=176.1
Q ss_pred cccCCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCC--h---hcccceEEEEccCC
Q 001400 837 VLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKR--Q---ETFARISGYCEQND 911 (1085)
Q Consensus 837 ~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~--~---~~~~~~~gy~~Q~~ 911 (1085)
+.+++..+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.++|.++. . ..+++.+||++|++
T Consensus 32 ~~y~~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~Q~~ 109 (263)
T 2olj_A 32 KSFGSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLED--FDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRF 109 (263)
T ss_dssp EEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEESSSTTCCHHHHHHHEEEECSSC
T ss_pred EEECCEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCC--CCCcEEEECCEECCCccccHHHHhCcEEEEeCCC
Confidence 33456789999999999999999999999999999999999876 56899999998763 1 23456799999999
Q ss_pred CCCCCCCHHHHHHHhh-hhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEE
Q 001400 912 IHSPGLTVLESLLFSA-WLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIV 990 (1085)
Q Consensus 912 ~~~~~~tv~e~l~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~il 990 (1085)
.+++.+||+||+.|+. ..+ ........+.++++++.+++.+..+... .+|||||||||+|||||+.+|++|
T Consensus 110 ~l~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LSgGqkQRv~lAraL~~~p~ll 181 (263)
T 2olj_A 110 NLFPHMTVLNNITLAPMKVR---KWPREKAEAKAMELLDKVGLKDKAHAYP-----DSLSGGQAQRVAIARALAMEPKIM 181 (263)
T ss_dssp CCCTTSCHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHTTCGGGTTSCG-----GGSCHHHHHHHHHHHHHTTCCSEE
T ss_pred cCCCCCCHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchHhcCCh-----hhCCHHHHHHHHHHHHHHCCCCEE
Confidence 9999999999999864 222 1223344566889999999988776653 479999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCC
Q 001400 991 FMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1085)
Q Consensus 991 llDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~ 1055 (1085)
||||||+|||+.++..+++.|+++.++|.|||++|||++ .+...||++++|++ |++++.|+..
T Consensus 182 lLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~-~~~~~~d~v~~l~~-G~i~~~g~~~ 244 (263)
T 2olj_A 182 LFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMG-FAREVGDRVLFMDG-GYIIEEGKPE 244 (263)
T ss_dssp EEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEET-TEEEEEECHH
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEEECCHH
Confidence 999999999999999999999999877999999999986 46678999999985 7898888753
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-41 Score=363.79 Aligned_cols=205 Identities=24% Similarity=0.315 Sum_probs=174.4
Q ss_pred ccccCCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCChh------cc-cceEEEEc
Q 001400 836 GVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE------TF-ARISGYCE 908 (1085)
Q Consensus 836 ~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~------~~-~~~~gy~~ 908 (1085)
++.+++..+|+||||+|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++... .+ ++.+||++
T Consensus 11 ~~~y~~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~ 88 (224)
T 2pcj_A 11 KKVIRGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDA--PTEGKVFLEGKEVDYTNEKELSLLRNRKLGFVF 88 (224)
T ss_dssp EEEETTEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSC--CSEEEEEETTEECCSSCHHHHHHHHHHHEEEEC
T ss_pred EEEECCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEECCCCCHHHHHHHHhCcEEEEe
Confidence 334455789999999999999999999999999999999999876 5689999999876421 12 25799999
Q ss_pred cCCCCCCCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCC
Q 001400 909 QNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPS 988 (1085)
Q Consensus 909 Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~ 988 (1085)
|++.+++.+||+||+.++...+. .......+.++++++.+++.+..+... .+||||||||++|||||+.+|+
T Consensus 89 q~~~l~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq~qrv~laral~~~p~ 160 (224)
T 2pcj_A 89 QFHYLIPELTALENVIVPMLKMG---KPKKEAKERGEYLLSELGLGDKLSRKP-----YELSGGEQQRVAIARALANEPI 160 (224)
T ss_dssp SSCCCCTTSCHHHHHHHHHHHTT---CCHHHHHHHHHHHHHHTTCTTCTTCCG-----GGSCHHHHHHHHHHHHTTTCCS
T ss_pred cCcccCCCCCHHHHHHhHHHHcC---CCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCCHHHHHHHHHHHHHHcCCC
Confidence 99999999999999998754432 222334566889999999988776654 4799999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEecCcEEEEecC
Q 001400 989 IVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGP 1053 (1085)
Q Consensus 989 illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~ 1053 (1085)
+|||||||+|||+.++..+++.|++++++|.|||++|||++. . +.||++++|++ |++++.|+
T Consensus 161 lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~-~-~~~d~v~~l~~-G~i~~~g~ 222 (224)
T 2pcj_A 161 LLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHEREL-A-ELTHRTLEMKD-GKVVGEIT 222 (224)
T ss_dssp EEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHH-H-TTSSEEEEEET-TEEEEEEE
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHH-H-HhCCEEEEEEC-CEEEEEee
Confidence 999999999999999999999999998779999999999753 4 78999999985 78888875
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-41 Score=374.12 Aligned_cols=203 Identities=25% Similarity=0.343 Sum_probs=175.4
Q ss_pred eEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCC--h---hcccceEEEEccCCC-CCC
Q 001400 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKR--Q---ETFARISGYCEQNDI-HSP 915 (1085)
Q Consensus 842 ~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~--~---~~~~~~~gy~~Q~~~-~~~ 915 (1085)
..+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.++|.++. . ..+++.+||++|++. .++
T Consensus 21 ~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~--p~~G~I~~~G~~i~~~~~~~~~~~~~ig~v~Q~~~~~~~ 98 (275)
T 3gfo_A 21 THALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILK--PSSGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLF 98 (275)
T ss_dssp CEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEECCCSHHHHHHHHHSEEEECSSGGGTCC
T ss_pred CeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC--CCCeEEEECCEECCcccccHHHHhCcEEEEEcCcccccc
Confidence 469999999999999999999999999999999999876 56899999999873 2 235678999999873 345
Q ss_pred CCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCC
Q 001400 916 GLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEP 995 (1085)
Q Consensus 916 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEP 995 (1085)
.+||+||+.|+...+ .....+..+.++++++.+++.++.+... .+|||||||||+|||||+.+|+|||||||
T Consensus 99 ~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LSgGqkQRv~iAraL~~~P~lLlLDEP 170 (275)
T 3gfo_A 99 SASVYQDVSFGAVNM---KLPEDEIRKRVDNALKRTGIEHLKDKPT-----HCLSFGQKKRVAIAGVLVMEPKVLILDEP 170 (275)
T ss_dssp SSBHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHTTCGGGTTSBG-----GGSCHHHHHHHHHHHHHTTCCSEEEEECT
T ss_pred cCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEECc
Confidence 789999999986543 2334555677899999999988877654 47999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHH-HCCceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCCC
Q 001400 996 TSGLDARAAAIVMRTVRNIV-NTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGS 1056 (1085)
Q Consensus 996 tsgLD~~~~~~i~~~l~~~~-~~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~~ 1056 (1085)
|+|||+.++..+++.|+++. ++|.|||++|||++ .+...||++++|++ |++++.|+..+
T Consensus 171 ts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~-~~~~~~drv~~l~~-G~i~~~g~~~~ 230 (275)
T 3gfo_A 171 TAGLDPMGVSEIMKLLVEMQKELGITIIIATHDID-IVPLYCDNVFVMKE-GRVILQGNPKE 230 (275)
T ss_dssp TTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCS-SGGGGCSEEEEEET-TEEEEEECHHH
T ss_pred cccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEECCHHH
Confidence 99999999999999999997 56999999999997 46678999999985 79999998654
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-41 Score=371.00 Aligned_cols=207 Identities=22% Similarity=0.292 Sum_probs=176.4
Q ss_pred cccCCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCCh----------------hcc
Q 001400 837 VLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ----------------ETF 900 (1085)
Q Consensus 837 ~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~----------------~~~ 900 (1085)
+.+++..+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.++|.++.. ..+
T Consensus 14 ~~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 91 (262)
T 1b0u_A 14 KRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEK--PSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLL 91 (262)
T ss_dssp EEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEECCEEECTTSSEEESCHHHHHHH
T ss_pred EEECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEccccccccccccccChhhHHHH
Confidence 33456789999999999999999999999999999999999876 568999999987641 124
Q ss_pred cceEEEEccCCCCCCCCCHHHHHHHhh-hhcCCCcccHHHHHHHHHHHHHHcCCCcc-cccccCCCCCCCCCHHHHHHHH
Q 001400 901 ARISGYCEQNDIHSPGLTVLESLLFSA-WLRLPSEIELETQRAFVEEVMELVELTSL-SGALIGLPGINGLSTEQRKRLT 978 (1085)
Q Consensus 901 ~~~~gy~~Q~~~~~~~~tv~e~l~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~~~~~~~~LS~Gqrqrl~ 978 (1085)
++.+||++|++.+++.+||+||+.++. ..+ ........+.++++++.+++.+. .+... .+|||||||||+
T Consensus 92 ~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~~-----~~LSgGq~qRv~ 163 (262)
T 1b0u_A 92 RTRLTMVFQHFNLWSHMTVLENVMEAPIQVL---GLSKHDARERALKYLAKVGIDERAQGKYP-----VHLSGGQQQRVS 163 (262)
T ss_dssp HHHEEEECSSCCCCTTSCHHHHHHHHHHHTT---CCCHHHHHHHHHHHHHHTTCCHHHHTSCG-----GGSCHHHHHHHH
T ss_pred hcceEEEecCcccCCCCcHHHHHHhhHHHhc---CCCHHHHHHHHHHHHHHcCCCchhhcCCc-----ccCCHHHHHHHH
Confidence 567999999999999999999999864 222 12233445668899999999887 66653 479999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCC
Q 001400 979 IAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1085)
Q Consensus 979 iA~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~ 1055 (1085)
|||||+.+|+||||||||+|||+.++..+++.|+++.++|.|||++|||++ .+...||++++|++ |++++.|+..
T Consensus 164 lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~-~~~~~~d~v~~l~~-G~i~~~g~~~ 238 (262)
T 1b0u_A 164 IARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG-FARHVSSHVIFLHQ-GKIEEEGDPE 238 (262)
T ss_dssp HHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHH-HHHHHCSEEEEEET-TEEEEEECHH
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCHH
Confidence 999999999999999999999999999999999999877999999999986 46678999999985 7899888753
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-40 Score=412.74 Aligned_cols=196 Identities=29% Similarity=0.387 Sum_probs=147.1
Q ss_pred EeeeeeEEEeCCeEEEEEccCCCChhHHHhhhh-C-C---------CCCC--eeee------EEEEcCccCChhc-----
Q 001400 844 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLA-G-R---------KTGG--IIEG------DIYISGYPKRQET----- 899 (1085)
Q Consensus 844 ~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~-g-~---------~~~~--~~~G------~i~i~g~~~~~~~----- 899 (1085)
.|+|||++|++||++||+|+||||||||+++|+ | . ..+. ...| .|.++|.++....
T Consensus 639 ~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~~~~~I~idq~pig~~~rs~pa 718 (972)
T 2r6f_A 639 NLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDKVIDIDQSPIGRTPRSNPA 718 (972)
T ss_dssp SCCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGGCSEEEEECSSCSCSSTTCCHH
T ss_pred ccccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeeccccccceEEEEcCcccccCccccch
Confidence 488999999999999999999999999999964 2 1 1111 2234 5888887752100
Q ss_pred -----------------ccceEEEEccCCCCC----------------------C-------------------------
Q 001400 900 -----------------FARISGYCEQNDIHS----------------------P------------------------- 915 (1085)
Q Consensus 900 -----------------~~~~~gy~~Q~~~~~----------------------~------------------------- 915 (1085)
..+..||++|...+. +
T Consensus 719 ty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~~~ce~c~G~r~~~e~l~v~~~g 798 (972)
T 2r6f_A 719 TYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVTYKG 798 (972)
T ss_dssp HHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEEEECTTTTTCCBCTTGGGCCBTT
T ss_pred hhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeeehhccccccccccccccccccchhhhhhccC
Confidence 123457777743221 0
Q ss_pred -------CCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCc-ccccccCCCCCCCCCHHHHHHHHHHHHHhcCC
Q 001400 916 -------GLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTS-LSGALIGLPGINGLSTEQRKRLTIAVELVANP 987 (1085)
Q Consensus 916 -------~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p 987 (1085)
.+|+.|++.|... ... ...+.++++.++|.. ..+.. +..|||||||||+||++|+.+|
T Consensus 799 ~sI~dvl~ltv~e~l~~~~~------~~~---~~~~~~~L~~~gL~~~~l~~~-----~~~LSGGekQRv~LAraL~~~p 864 (972)
T 2r6f_A 799 KNIAEVLDMTVEDALDFFAS------IPK---IKRKLETLYDVGLGYMKLGQP-----ATTLSGGEAQRVKLAAELHRRS 864 (972)
T ss_dssp BCHHHHHTSBHHHHHHHTCS------CHH---HHHHHHHHHHTTCSSSBTTCC-----GGGCCHHHHHHHHHHHHHSSCC
T ss_pred CCHHHhhhcCHHHHHHHHhc------chh---HHHHHHHHHHcCCCcccccCc-----hhhCCHHHHHHHHHHHHHhcCC
Confidence 3577777765321 111 123467899999976 34443 2579999999999999999875
Q ss_pred ---CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEe-----cCcEEEEecCCC
Q 001400 988 ---SIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMK-----RGGELIYAGPLG 1055 (1085)
Q Consensus 988 ---~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~-----~gG~~~~~g~~~ 1055 (1085)
+||||||||+|||+.++..+++.|++++++|.|||++|||++ ..+.||++++|. ++|++++.|+..
T Consensus 865 ~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~--~i~~aDrIivL~p~gG~~~G~Iv~~g~~~ 938 (972)
T 2r6f_A 865 NGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLD--VIKTADYIIDLGPEGGDRGGQIVAVGTPE 938 (972)
T ss_dssp CSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH--HHTTCSEEEEECSSSTTSCCSEEEEESHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH--HHHhCCEEEEEcCCCCCCCCEEEEecCHH
Confidence 999999999999999999999999999888999999999975 457899999994 468999988754
|
| >4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-41 Score=372.97 Aligned_cols=216 Identities=22% Similarity=0.325 Sum_probs=182.2
Q ss_pred ccCCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCCh---hcccceEEEEccCCCCC
Q 001400 838 LEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFARISGYCEQNDIHS 914 (1085)
Q Consensus 838 ~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gy~~Q~~~~~ 914 (1085)
.+++..+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.++|.++.. ..+++.+||++|++.++
T Consensus 20 ~~~~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~~~~~~~~~~~~~i~~v~q~~~~~ 97 (266)
T 4g1u_C 20 HVQQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLS--PSHGECHLLGQNLNSWQPKALARTRAVMRQYSELA 97 (266)
T ss_dssp EETTEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSC--CSSCEEEETTEETTTSCHHHHHHHEEEECSCCCCC
T ss_pred EeCCeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCcEEEECCEECCcCCHHHHhheEEEEecCCccC
Confidence 3466789999999999999999999999999999999999876 468999999998653 33556799999999888
Q ss_pred CCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhc------CCC
Q 001400 915 PGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVA------NPS 988 (1085)
Q Consensus 915 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~------~p~ 988 (1085)
+.+||+||+.++..... ....++.++++++.+++.++.+... .+|||||||||+|||||+. +|+
T Consensus 98 ~~~tv~e~l~~~~~~~~-----~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq~QRv~iAraL~~~~~~~~~p~ 167 (266)
T 4g1u_C 98 FPFSVSEVIQMGRAPYG-----GSQDRQALQQVMAQTDCLALAQRDY-----RVLSGGEQQRVQLARVLAQLWQPQPTPR 167 (266)
T ss_dssp SCCBHHHHHHGGGTTSC-----STTHHHHHHHHHHHTTCSTTTTSBG-----GGCCHHHHHHHHHHHHHHHTCCSSCCCE
T ss_pred CCCCHHHHHHhhhhhcC-----cHHHHHHHHHHHHHcCChhHhcCCc-----ccCCHHHHHHHHHHHHHhcccccCCCCC
Confidence 89999999998754321 1223456789999999988877654 4799999999999999999 999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCCC--chHHHHHHH
Q 001400 989 IVFMDEPTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGS--KSCELIKYF 1065 (1085)
Q Consensus 989 illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~~--~~~~~~~~~ 1065 (1085)
||||||||+|||+.++..+++.|+++.++ |.|||++|||++ .+...||++++|++ |++++.|+..+ ....+.++|
T Consensus 168 lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~-~~~~~~d~v~vl~~-G~i~~~g~~~~~~~~~~l~~~~ 245 (266)
T 4g1u_C 168 WLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLN-LAALYADRIMLLAQ-GKLVACGTPEEVLNAETLTQWY 245 (266)
T ss_dssp EEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHH-HHHHHCSEEEEEET-TEEEEEECHHHHCCHHHHHHHC
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHH-HHHHhCCEEEEEEC-CEEEEEcCHHHHhCcHHHHHHh
Confidence 99999999999999999999999999765 579999999986 46778999999985 79999998754 234556666
Q ss_pred Hh
Q 001400 1066 EV 1067 (1085)
Q Consensus 1066 ~~ 1067 (1085)
..
T Consensus 246 ~~ 247 (266)
T 4g1u_C 246 QA 247 (266)
T ss_dssp CS
T ss_pred CC
Confidence 53
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-41 Score=366.68 Aligned_cols=206 Identities=22% Similarity=0.303 Sum_probs=175.9
Q ss_pred ccCCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCCh--hcccceEEEEccCCCCCC
Q 001400 838 LEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ--ETFARISGYCEQNDIHSP 915 (1085)
Q Consensus 838 ~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~--~~~~~~~gy~~Q~~~~~~ 915 (1085)
.+++..+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.++|.++.. ..+++.+||++|++.+++
T Consensus 24 ~y~~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~~~~~~~~~~~~i~~v~q~~~l~~ 101 (256)
T 1vpl_A 24 RIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIK--PSSGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYR 101 (256)
T ss_dssp EETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEETTTCHHHHHTTEEEECTTCCCCT
T ss_pred EECCEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEECCccHHHHhhcEEEEcCCCCCCC
Confidence 3455789999999999999999999999999999999999876 568999999987643 234567999999999999
Q ss_pred CCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCC
Q 001400 916 GLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEP 995 (1085)
Q Consensus 916 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEP 995 (1085)
.+||+||+.+....+. .......+.++++++.+++.+..+... .+||||||||++|||||+.+|+|||||||
T Consensus 102 ~ltv~enl~~~~~~~~---~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSgGq~qRv~lAraL~~~p~lllLDEP 173 (256)
T 1vpl_A 102 NMQGIEYLRFVAGFYA---SSSSEIEEMVERATEIAGLGEKIKDRV-----STYSKGMVRKLLIARALMVNPRLAILDEP 173 (256)
T ss_dssp TSBHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHHCCGGGGGSBG-----GGCCHHHHHHHHHHHHHTTCCSEEEEEST
T ss_pred CCcHHHHHHHHHHHcC---CChHHHHHHHHHHHHHCCCchHhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 9999999998654332 122333456789999999988777654 47999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCC
Q 001400 996 TSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1085)
Q Consensus 996 tsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~ 1055 (1085)
|+|||+.++..+++.|+++.++|+|||++|||++ .+...||++++|++ |++++.|+..
T Consensus 174 ts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~-~~~~~~d~v~~l~~-G~i~~~g~~~ 231 (256)
T 1vpl_A 174 TSGLDVLNAREVRKILKQASQEGLTILVSSHNML-EVEFLCDRIALIHN-GTIVETGTVE 231 (256)
T ss_dssp TTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHH-HHTTTCSEEEEEET-TEEEEEEEHH
T ss_pred ccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH-HHHHHCCEEEEEEC-CEEEEecCHH
Confidence 9999999999999999999877999999999976 35567999999985 7888888653
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-41 Score=382.21 Aligned_cols=207 Identities=24% Similarity=0.365 Sum_probs=181.3
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCC-CceEEEEccCCCCCCCCCH
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP-PRTSAYVSQQDWQVAEMTV 226 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 226 (1085)
..+|+|||+.|++||+++|+|||||||||||++|+|+++|+ +|+|.++|.++....+ ++.+|||+|++.++|.+||
T Consensus 16 ~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~---~G~I~i~G~~~~~~~~~~r~ig~VfQ~~~l~p~ltV 92 (381)
T 3rlf_A 16 VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETIT---SGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSV 92 (381)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTCCGGGSCEEEECTTCCCCTTSCH
T ss_pred EEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCC---CeEEEECCEECCCCCHHHCCEEEEecCCcCCCCCCH
Confidence 46999999999999999999999999999999999999886 9999999999876543 4679999999999999999
Q ss_pred HHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCccccc
Q 001400 227 RETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKG 306 (1085)
Q Consensus 227 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 306 (1085)
+||+.|+.+..+... .+.+.+++++++.+||++..+..+ .+
T Consensus 93 ~eni~~~~~~~~~~~----------------------------------~~~~~~v~~~l~~~~L~~~~~r~p-----~~ 133 (381)
T 3rlf_A 93 AENMSFGLKLAGAKK----------------------------------EVINQRVNQVAEVLQLAHLLDRKP-----KA 133 (381)
T ss_dssp HHHHTHHHHHTTCCH----------------------------------HHHHHHHHHHHHHTTCGGGTTCCG-----GG
T ss_pred HHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhcCCh-----hH
Confidence 999999876543110 011235888999999998777655 56
Q ss_pred CchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEecCCeE
Q 001400 307 ISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQI 386 (1085)
Q Consensus 307 LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~~G~i 386 (1085)
|||||||||+|||||+.+|++|||||||||||+..+.++.+.|+++.+..+ ++++.++|+..++..++|+|++|++|++
T Consensus 134 LSGGqrQRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g-~tii~vTHd~~ea~~~aDri~vl~~G~i 212 (381)
T 3rlf_A 134 LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLG-RTMIYVTHDQVEAMTLADKIVVLDAGRV 212 (381)
T ss_dssp SCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHC-CEEEEECSCHHHHHHHCSEEEEEETTEE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCC-CEEEEEECCHHHHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999999876544 5566689999999999999999999999
Q ss_pred EEecChhhHHH
Q 001400 387 VYQGPRVSVLD 397 (1085)
Q Consensus 387 v~~G~~~~~~~ 397 (1085)
+..|+++++..
T Consensus 213 ~~~g~~~~l~~ 223 (381)
T 3rlf_A 213 AQVGKPLELYH 223 (381)
T ss_dssp EEEECHHHHHH
T ss_pred EEEeCHHHHHh
Confidence 99999998753
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-41 Score=380.75 Aligned_cols=207 Identities=22% Similarity=0.351 Sum_probs=178.8
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccC----CCCC-CCceEEEEccCCCCCC
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGF----KEFV-PPRTSAYVSQQDWQVA 222 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~----~~~~-~~~~~~yv~Q~d~~~~ 222 (1085)
..+|+|||+.|++||+++|+|||||||||||++|+|+++|+ +|+|.++|+++ .... .++.+|||+|++.++|
T Consensus 17 ~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~---~G~I~i~G~~i~~~~~~~~~~~r~ig~vfQ~~~l~p 93 (359)
T 3fvq_A 17 TPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPD---SGEISLSGKTIFSKNTNLPVRERRLGYLVQEGVLFP 93 (359)
T ss_dssp EEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCS---EEEEEETTEEEESSSCBCCGGGSCCEEECTTCCCCT
T ss_pred EEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCC---CcEEEECCEECcccccccchhhCCEEEEeCCCcCCC
Confidence 46999999999999999999999999999999999999887 99999999987 2222 2467999999999999
Q ss_pred CCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCc
Q 001400 223 EMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDE 302 (1085)
Q Consensus 223 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 302 (1085)
.+||+||+.|+.+..+... .+.+.+++++++.+||++.+|..+
T Consensus 94 ~ltV~eni~~~l~~~~~~~----------------------------------~~~~~~v~~~l~~~gL~~~~~r~~--- 136 (359)
T 3fvq_A 94 HLTVYRNIAYGLGNGKGRT----------------------------------AQERQRIEAMLELTGISELAGRYP--- 136 (359)
T ss_dssp TSCHHHHHHTTSTTSSCCS----------------------------------HHHHHHHHHHHHHHTCGGGTTSCG---
T ss_pred CCCHHHHHHHHHHHcCCCh----------------------------------HHHHHHHHHHHHHcCCchHhcCCh---
Confidence 9999999999865432111 011235888999999998877655
Q ss_pred ccccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEec
Q 001400 303 MLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLS 382 (1085)
Q Consensus 303 ~~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~ 382 (1085)
.+|||||||||+|||||+.+|++|||||||||||+.++.++.+.|+++.+.. +++++.++|+..++..++|+|++|+
T Consensus 137 --~~LSGGq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~-g~tvi~vTHd~~ea~~~aDri~vl~ 213 (359)
T 3fvq_A 137 --HELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRAN-GKSAVFVSHDREEALQYADRIAVMK 213 (359)
T ss_dssp --GGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHT-TCEEEEECCCHHHHHHHCSEEEEEE
T ss_pred --hhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHHCCEEEEEE
Confidence 4699999999999999999999999999999999999999999888876654 4566668999999999999999999
Q ss_pred CCeEEEecChhhHHH
Q 001400 383 EGQIVYQGPRVSVLD 397 (1085)
Q Consensus 383 ~G~iv~~G~~~~~~~ 397 (1085)
+|+++..|+++++..
T Consensus 214 ~G~i~~~g~~~el~~ 228 (359)
T 3fvq_A 214 QGRILQTASPHELYR 228 (359)
T ss_dssp TTEEEEEECHHHHHH
T ss_pred CCEEEEEeCHHHHHh
Confidence 999999999998753
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-41 Score=369.15 Aligned_cols=209 Identities=24% Similarity=0.297 Sum_probs=175.8
Q ss_pred ccCCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCCh----hcccceEEEEccCCCC
Q 001400 838 LEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ----ETFARISGYCEQNDIH 913 (1085)
Q Consensus 838 ~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~----~~~~~~~gy~~Q~~~~ 913 (1085)
.+++.++|+||||+|++||++||+||||||||||+++|+|..+ +.+|+|.++|.++.. ...++.+||++|++.+
T Consensus 16 ~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l 93 (257)
T 1g6h_A 16 YFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLK--ADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQP 93 (257)
T ss_dssp EETTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEECTTCCHHHHHHHTEEECCCCCGG
T ss_pred EECCEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECCCCCHHHHHhCCEEEEccCCcc
Confidence 3456789999999999999999999999999999999999876 568999999987643 1234579999999988
Q ss_pred CCCCCHHHHHHHhhhh-cCCC---------cccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHH
Q 001400 914 SPGLTVLESLLFSAWL-RLPS---------EIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVEL 983 (1085)
Q Consensus 914 ~~~~tv~e~l~~~~~~-~~~~---------~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL 983 (1085)
++.+||+||+.++... +... ........+.++++++.+++.+..+... .+|||||||||+|||||
T Consensus 94 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGqkQrv~iAraL 168 (257)
T 1g6h_A 94 LKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKA-----GELSGGQMKLVEIGRAL 168 (257)
T ss_dssp GGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBG-----GGSCHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCc-----hhCCHHHHHHHHHHHHH
Confidence 8999999999986532 1010 0112334456889999999988777654 47999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCC
Q 001400 984 VANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1085)
Q Consensus 984 ~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~ 1055 (1085)
+.+|+||||||||+|||+.++..+++.|++++++|.|||++|||++ ++...||++++|++ |++++.|+..
T Consensus 169 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~-~~~~~~d~v~~l~~-G~i~~~g~~~ 238 (257)
T 1g6h_A 169 MTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLD-IVLNYIDHLYVMFN-GQIIAEGRGE 238 (257)
T ss_dssp HTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCS-TTGGGCSEEEEEET-TEEEEEEESH
T ss_pred HcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEEeCHH
Confidence 9999999999999999999999999999999877999999999987 46678999999985 7888888753
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-41 Score=379.58 Aligned_cols=204 Identities=25% Similarity=0.381 Sum_probs=178.0
Q ss_pred CCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCCh-hcccceEEEEccCCCCCCCCC
Q 001400 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ-ETFARISGYCEQNDIHSPGLT 918 (1085)
Q Consensus 840 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~-~~~~~~~gy~~Q~~~~~~~~t 918 (1085)
++..+|+||||+|++||+++|+|||||||||||++|+|... +.+|+|.++|.++.. ...++.+||++|++.++|.+|
T Consensus 26 g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~lt 103 (355)
T 1z47_A 26 GGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLER--PTKGDVWIGGKRVTDLPPQKRNVGLVFQNYALFQHMT 103 (355)
T ss_dssp TSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC--CSEEEEEETTEECTTCCGGGSSEEEECGGGCCCTTSC
T ss_pred CCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCC--CCccEEEECCEECCcCChhhCcEEEEecCcccCCCCC
Confidence 44568999999999999999999999999999999999876 569999999988643 234678999999999999999
Q ss_pred HHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCC
Q 001400 919 VLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSG 998 (1085)
Q Consensus 919 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEPtsg 998 (1085)
|+||+.|+...+. ....+.++.++++++.+++.++.+... .+|||||||||+|||||+.+|+||||||||||
T Consensus 104 v~eni~~~l~~~~---~~~~~~~~~v~~~l~~~gL~~~~~r~~-----~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~ 175 (355)
T 1z47_A 104 VYDNVSFGLREKR---VPKDEMDARVRELLRFMRLESYANRFP-----HELSGGQQQRVALARALAPRPQVLLFDEPFAA 175 (355)
T ss_dssp HHHHHHHHHHHTT---CCHHHHHHHHHHHHHHTTCGGGTTSCG-----GGSCHHHHHHHHHHHHHTTCCSEEEEESTTCC
T ss_pred HHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhHhcCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCccc
Confidence 9999999865432 233445667899999999988877654 57999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHC-CceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCC
Q 001400 999 LDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1085)
Q Consensus 999 LD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~ 1055 (1085)
||+.++..+++.|+++.++ |.|||++|||++ ++...+|++++|++ |+++..|+..
T Consensus 176 LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~-G~i~~~g~~~ 231 (355)
T 1z47_A 176 IDTQIRRELRTFVRQVHDEMGVTSVFVTHDQE-EALEVADRVLVLHE-GNVEQFGTPE 231 (355)
T ss_dssp SSHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEEEET-TEEEEEECHH
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEcCHH
Confidence 9999999999999999754 999999999986 57788999999985 7999988754
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-40 Score=378.83 Aligned_cols=210 Identities=27% Similarity=0.343 Sum_probs=180.7
Q ss_pred ccccccCCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCChh-cccceEEEEccCCC
Q 001400 834 QEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE-TFARISGYCEQNDI 912 (1085)
Q Consensus 834 ~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~-~~~~~~gy~~Q~~~ 912 (1085)
++.+.+++..+|+||||+|++||+++|+|||||||||||++|+|... +.+|+|.++|.++... ..++.+||++|++.
T Consensus 8 ~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~ 85 (362)
T 2it1_A 8 NIVKKFGNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYK--PTSGKIYFDEKDVTELPPKDRNVGLVFQNWA 85 (362)
T ss_dssp EEEEESSSSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECTTSCGGGTTEEEECTTCC
T ss_pred eEEEEECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCC--CCceEEEECCEECCcCCHhHCcEEEEecCcc
Confidence 33444556789999999999999999999999999999999999876 5689999999886432 23567999999999
Q ss_pred CCCCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q 001400 913 HSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFM 992 (1085)
Q Consensus 913 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illl 992 (1085)
++|.+||+||+.|+...+. ....+.++.++++++.+++.++.+... .+|||||||||+|||||+.+|++|||
T Consensus 86 l~~~ltv~eni~~~~~~~~---~~~~~~~~~v~~~l~~~~L~~~~~r~~-----~~LSGGq~QRvalArAL~~~P~lLLL 157 (362)
T 2it1_A 86 LYPHMTVYKNIAFPLELRK---APREEIDKKVREVAKMLHIDKLLNRYP-----WQLSGGQQQRVAIARALVKEPEVLLL 157 (362)
T ss_dssp CCTTSCHHHHHHHHHHHTT---CCHHHHHHHHHHHHHHTTCTTCTTCCG-----GGSCHHHHHHHHHHHHHTTCCSEEEE
T ss_pred cCCCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCchHhhCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 9999999999999865432 233445567899999999988877654 57999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHC-CceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCC
Q 001400 993 DEPTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1085)
Q Consensus 993 DEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~ 1055 (1085)
||||||||+..+..+++.|+++.++ |.|||++|||++ ++...+|++++|++ |+++..|+..
T Consensus 158 DEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~-G~i~~~g~~~ 219 (362)
T 2it1_A 158 DEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQA-EALAMADRIAVIRE-GEILQVGTPD 219 (362)
T ss_dssp ESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECHH
T ss_pred ECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEcCHH
Confidence 9999999999999999999999754 999999999986 57788999999985 7899888754
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-41 Score=379.06 Aligned_cols=210 Identities=26% Similarity=0.342 Sum_probs=179.7
Q ss_pred ccccccCCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCChh-cccceEEEEccCCC
Q 001400 834 QEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE-TFARISGYCEQNDI 912 (1085)
Q Consensus 834 ~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~-~~~~~~gy~~Q~~~ 912 (1085)
++.+.+++..+|+||||+|++||+++|+|||||||||||++|+|... +.+|+|.++|.++... ..++.+||++|++.
T Consensus 8 ~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~ 85 (359)
T 2yyz_A 8 NLKKYFGKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYK--PTSGEIYFDDVLVNDIPPKYREVGMVFQNYA 85 (359)
T ss_dssp EEEEEETTEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSC--CSEEEEEETTEECTTSCGGGTTEEEECSSCC
T ss_pred EEEEEECCEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCC--CCccEEEECCEECCCCChhhCcEEEEecCcc
Confidence 33344456789999999999999999999999999999999999876 5689999999886432 23567999999999
Q ss_pred CCCCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q 001400 913 HSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFM 992 (1085)
Q Consensus 913 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illl 992 (1085)
++|.+||+||+.|+...+ .....+.++.++++++.+++.++.+... .+|||||||||+|||||+.+|++|||
T Consensus 86 l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~~-----~~LSgGq~QRvalArAL~~~P~lLLL 157 (359)
T 2yyz_A 86 LYPHMTVFENIAFPLRAR---RISKDEVEKRVVEIARKLLIDNLLDRKP-----TQLSGGQQQRVALARALVKQPKVLLF 157 (359)
T ss_dssp CCTTSCHHHHHHGGGSSS---CSHHHHTTHHHHHHHHHTTCGGGTTSCG-----GGSCHHHHHHHHHHHHHTTCCSEEEE
T ss_pred cCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchHhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 999999999999975432 2223334567899999999988877654 57999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHC-CceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCC
Q 001400 993 DEPTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1085)
Q Consensus 993 DEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~ 1055 (1085)
||||||||+..+..+++.|+++.++ |.|||++|||++ ++...+|++++|++ |+++..|+..
T Consensus 158 DEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~~~~~adri~vl~~-G~i~~~g~~~ 219 (359)
T 2yyz_A 158 DEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQA-EAMTMASRIAVFNQ-GKLVQYGTPD 219 (359)
T ss_dssp ESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECHH
T ss_pred ECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEEeCCHH
Confidence 9999999999999999999998754 999999999986 57788999999985 7899988754
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-40 Score=361.34 Aligned_cols=205 Identities=22% Similarity=0.311 Sum_probs=171.7
Q ss_pred ccCCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCChh---c-ccceEEEEccCCCC
Q 001400 838 LEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE---T-FARISGYCEQNDIH 913 (1085)
Q Consensus 838 ~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~---~-~~~~~gy~~Q~~~~ 913 (1085)
.+++..+|+||||+|++||++||+||||||||||+++|+|..+ +.+|+|.++|.++... . .++.+||++|++.+
T Consensus 15 ~y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l 92 (240)
T 1ji0_A 15 YYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVR--AQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRI 92 (240)
T ss_dssp EETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEECTTCCHHHHHHTTEEEECSSCCC
T ss_pred EECCeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEECCCCCHHHHHhCCEEEEecCCcc
Confidence 3455679999999999999999999999999999999999876 5689999999886431 1 24459999999999
Q ss_pred CCCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcC-CCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q 001400 914 SPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVE-LTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFM 992 (1085)
Q Consensus 914 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illl 992 (1085)
++.+||+||+.++...... .....+.++++++.++ +.+..+... .+||||||||++|||||+.+|+||||
T Consensus 93 ~~~ltv~enl~~~~~~~~~----~~~~~~~~~~~l~~~~~l~~~~~~~~-----~~LSgGq~qrv~lAraL~~~p~lllL 163 (240)
T 1ji0_A 93 FPELTVYENLMMGAYNRKD----KEGIKRDLEWIFSLFPRLKERLKQLG-----GTLSGGEQQMLAIGRALMSRPKLLMM 163 (240)
T ss_dssp CTTSBHHHHHHGGGTTCCC----SSHHHHHHHHHHHHCHHHHTTTTSBS-----SSSCHHHHHHHHHHHHHTTCCSEEEE
T ss_pred CCCCcHHHHHHHhhhcCCC----HHHHHHHHHHHHHHcccHhhHhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 9999999999986421111 1223455778888884 776665543 57999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCC
Q 001400 993 DEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1085)
Q Consensus 993 DEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~ 1055 (1085)
||||+|||+.++..+++.|+++.++|+|||++|||++ ++...||++++|++ |++++.|+..
T Consensus 164 DEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~-~~~~~~d~v~~l~~-G~i~~~g~~~ 224 (240)
T 1ji0_A 164 DEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNAL-GALKVAHYGYVLET-GQIVLEGKAS 224 (240)
T ss_dssp ECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHH-HHHHHCSEEEEEET-TEEEEEEEHH
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEEcCHH
Confidence 9999999999999999999999777999999999986 46788999999985 7888887653
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-40 Score=379.52 Aligned_cols=210 Identities=26% Similarity=0.339 Sum_probs=180.3
Q ss_pred ccccccCCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCCh-------hcccceEEE
Q 001400 834 QEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ-------ETFARISGY 906 (1085)
Q Consensus 834 ~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~-------~~~~~~~gy 906 (1085)
++.+.+++..+|+||||+|++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++.. ...++.+||
T Consensus 8 ~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~~~~~~~~~~~~~~~r~ig~ 85 (372)
T 1g29_1 8 DVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEE--PSRGQIYIGDKLVADPEKGIFVPPKDRDIAM 85 (372)
T ss_dssp EEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC--CSEEEEEETTEEEEEGGGTEECCGGGSSEEE
T ss_pred eEEEEECCEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCC--CCccEEEECCEECccccccccCCHhHCCEEE
Confidence 33344556789999999999999999999999999999999999876 569999999987532 123567999
Q ss_pred EccCCCCCCCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcC
Q 001400 907 CEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVAN 986 (1085)
Q Consensus 907 ~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~ 986 (1085)
++|++.++|.+||+||+.|+...+. ....+.++.++++++.++|.++.+... .+|||||||||+|||||+.+
T Consensus 86 v~Q~~~l~~~ltv~eni~~~~~~~~---~~~~~~~~~v~~~l~~~~L~~~~~r~~-----~~LSGGq~QRvalArAL~~~ 157 (372)
T 1g29_1 86 VFQSYALYPHMTVYDNIAFPLKLRK---VPRQEIDQRVREVAELLGLTELLNRKP-----RELSGGQRQRVALGRAIVRK 157 (372)
T ss_dssp ECSCCCCCTTSCHHHHHHHHHHHTT---CCHHHHHHHHHHHHHHHTCGGGTTCCG-----GGSCHHHHHHHHHHHHHHTC
T ss_pred EeCCCccCCCCCHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHCCCchHhcCCc-----ccCCHHHHHHHHHHHHHhcC
Confidence 9999999999999999999865432 233445567899999999988877654 57999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCC
Q 001400 987 PSIVFMDEPTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1085)
Q Consensus 987 p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~ 1055 (1085)
|+||||||||||||+..+..+++.|+++.++ |.|||++|||++ ++...+|++++|++ |+++..|+..
T Consensus 158 P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~-G~i~~~g~~~ 225 (372)
T 1g29_1 158 PQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQV-EAMTMGDRIAVMNR-GVLQQVGSPD 225 (372)
T ss_dssp CSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECHH
T ss_pred CCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHH-HHHHhCCEEEEEeC-CEEEEeCCHH
Confidence 9999999999999999999999999999754 999999999986 57788999999985 7999988754
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-40 Score=407.49 Aligned_cols=106 Identities=25% Similarity=0.396 Sum_probs=91.7
Q ss_pred HHHHHHHHHcCCCcc-cccccCCCCCCCCCHHHHHHHHHHHHHhcC---CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC
Q 001400 942 AFVEEVMELVELTSL-SGALIGLPGINGLSTEQRKRLTIAVELVAN---PSIVFMDEPTSGLDARAAAIVMRTVRNIVNT 1017 (1085)
Q Consensus 942 ~~~~~~l~~~~l~~~-~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~---p~illlDEPtsgLD~~~~~~i~~~l~~~~~~ 1017 (1085)
..+.++++.++|... .+.. +..|||||||||+||++|+.+ |+||||||||+|||+.+...+++.|++++++
T Consensus 708 ~~~~~~L~~~gL~~~~l~~~-----~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~ 782 (842)
T 2vf7_A 708 FRALDTLREVGLGYLRLGQP-----ATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDA 782 (842)
T ss_dssp HHHHHHHHHTTCTTSBTTCC-----GGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCcccccCC-----cccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC
Confidence 356889999999763 2332 357999999999999999996 6999999999999999999999999999888
Q ss_pred CceEEEEecCccHHHHHhcCEEEEEe-----cCcEEEEecCC
Q 001400 1018 GRTIVCTIHQPSIDIFESFDELLFMK-----RGGELIYAGPL 1054 (1085)
Q Consensus 1018 g~tvi~~~H~~~~~~~~~~d~il~l~-----~gG~~~~~g~~ 1054 (1085)
|.|||+||||++. + +.||++++|. ++|++++.|+.
T Consensus 783 G~tVIvisHdl~~-i-~~aDrii~L~p~~g~~~G~Iv~~g~~ 822 (842)
T 2vf7_A 783 GNTVIAVEHKMQV-V-AASDWVLDIGPGAGEDGGRLVAQGTP 822 (842)
T ss_dssp TCEEEEECCCHHH-H-TTCSEEEEECSSSGGGCCSEEEEECH
T ss_pred CCEEEEEcCCHHH-H-HhCCEEEEECCCCCCCCCEEEEEcCH
Confidence 9999999999753 4 7899999994 46899998875
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-40 Score=357.14 Aligned_cols=208 Identities=18% Similarity=0.222 Sum_probs=170.6
Q ss_pred ceeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCC-------CceEEEEccCCC
Q 001400 147 KLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP-------PRTSAYVSQQDW 219 (1085)
Q Consensus 147 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~-------~~~~~yv~Q~d~ 219 (1085)
...+|+|+|++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++||+|++.
T Consensus 17 ~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~ 93 (235)
T 3tif_A 17 IIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPT---EGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFN 93 (235)
T ss_dssp EEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCC
T ss_pred ceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---ceEEEECCEEcccCCHHHHHHHhhccEEEEecCCc
Confidence 357999999999999999999999999999999999999886 9999999998866542 135999999999
Q ss_pred CCCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccc-ccc
Q 001400 220 QVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCA-DTL 298 (1085)
Q Consensus 220 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~-dt~ 298 (1085)
+++.+||+||+.++........... .+...++.++++.+||.+.. +..
T Consensus 94 l~~~~tv~enl~~~~~~~~~~~~~~-------------------------------~~~~~~~~~~l~~~~l~~~~~~~~ 142 (235)
T 3tif_A 94 LIPLLTALENVELPLIFKYRGAMSG-------------------------------EERRKRALECLKMAELEERFANHK 142 (235)
T ss_dssp CCTTSCHHHHHHHHHHTCSSSCCCH-------------------------------HHHHHHHHHHHHHTTCCGGGTTCC
T ss_pred cCCCCcHHHHHHHHHHhhhccCCCH-------------------------------HHHHHHHHHHHHHCCCChhhhhCC
Confidence 9999999999998765321110000 00123477889999998643 544
Q ss_pred ccCcccccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeE
Q 001400 299 VGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDV 378 (1085)
Q Consensus 299 vg~~~~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i 378 (1085)
+..|||||||||+|||||+.+|++|+|||||+|||+.++..+++.|+++++..+. +|+.++|+.. +..+||+|
T Consensus 143 -----~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~-tvi~vtHd~~-~~~~~d~i 215 (235)
T 3tif_A 143 -----PNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGK-TVVVVTHDIN-VARFGERI 215 (235)
T ss_dssp -----GGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCC-EEEEECSCHH-HHTTSSEE
T ss_pred -----hhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCC-EEEEEcCCHH-HHHhCCEE
Confidence 4569999999999999999999999999999999999999999999998764344 4555778876 45899999
Q ss_pred EEecCCeEEEecChhhH
Q 001400 379 ILLSEGQIVYQGPRVSV 395 (1085)
Q Consensus 379 i~L~~G~iv~~G~~~~~ 395 (1085)
++|++|+++..++.+++
T Consensus 216 ~~l~~G~i~~~~~~~~~ 232 (235)
T 3tif_A 216 IYLKDGEVEREEKLRGF 232 (235)
T ss_dssp EEEETTEEEEEEECC--
T ss_pred EEEECCEEEEEcChhhh
Confidence 99999999999987664
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-40 Score=378.55 Aligned_cols=208 Identities=24% Similarity=0.331 Sum_probs=173.0
Q ss_pred ccccCCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCChh-cccceEEEEccCCCCC
Q 001400 836 GVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE-TFARISGYCEQNDIHS 914 (1085)
Q Consensus 836 ~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~-~~~~~~gy~~Q~~~~~ 914 (1085)
.+.+++..+|+||||+|++||+++|+|||||||||||++|+|... +.+|+|.++|.++... ..++.+||++|++.++
T Consensus 18 ~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~ 95 (372)
T 1v43_A 18 TKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEE--PTEGRIYFGDRDVTYLPPKDRNISMVFQSYAVW 95 (372)
T ss_dssp EEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECTTSCGGGGTEEEEEC-----
T ss_pred EEEECCEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCC--CCceEEEECCEECCCCChhhCcEEEEecCcccC
Confidence 334456789999999999999999999999999999999999876 5699999999886432 2356799999999999
Q ss_pred CCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Q 001400 915 PGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDE 994 (1085)
Q Consensus 915 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDE 994 (1085)
|.+||+||+.|+...+ .....+.++.++++++.++|.++.+... .+|||||||||+|||||+.+|++|||||
T Consensus 96 ~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~~-----~~LSGGq~QRvalArAL~~~P~lLLLDE 167 (372)
T 1v43_A 96 PHMTVYENIAFPLKIK---KFPKDEIDKRVRWAAELLQIEELLNRYP-----AQLSGGQRQRVAVARAIVVEPDVLLMDE 167 (372)
T ss_dssp -CCCHHHHHHTTCC-----CCCHHHHHHHHHHHHHHTTCGGGTTSCT-----TTCCSSCHHHHHHHHHHTTCCSEEEEES
T ss_pred CCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhHhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 9999999999875432 2233445567899999999988877653 5899999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHC-CceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCC
Q 001400 995 PTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1085)
Q Consensus 995 PtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~ 1055 (1085)
||||||+..+..+++.|+++.++ |.|||++|||++ ++...+|++++|++ |+++..|+..
T Consensus 168 P~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~-G~i~~~g~~~ 227 (372)
T 1v43_A 168 PLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQV-EAMTMGDRIAVMNR-GQLLQIGSPT 227 (372)
T ss_dssp TTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECHH
T ss_pred CCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCHH
Confidence 99999999999999999999765 999999999986 57788999999985 7899888754
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-40 Score=365.62 Aligned_cols=206 Identities=25% Similarity=0.340 Sum_probs=174.2
Q ss_pred eecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCC-----CCCceEEEEccCC-CCCC
Q 001400 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEF-----VPPRTSAYVSQQD-WQVA 222 (1085)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~-----~~~~~~~yv~Q~d-~~~~ 222 (1085)
.+|+|||++|++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++... ..++.+|||+|++ ..+.
T Consensus 22 ~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~---~G~I~~~G~~i~~~~~~~~~~~~~ig~v~Q~~~~~~~ 98 (275)
T 3gfo_A 22 HALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPS---SGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLF 98 (275)
T ss_dssp EEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEECCCSHHHHHHHHHSEEEECSSGGGTCC
T ss_pred eEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC---CeEEEECCEECCcccccHHHHhCcEEEEEcCcccccc
Confidence 5999999999999999999999999999999999999886 99999999987421 1235799999986 3455
Q ss_pred CCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCc
Q 001400 223 EMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDE 302 (1085)
Q Consensus 223 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 302 (1085)
.+||+||+.|+....+... .+...+++++++.+||++..+..+
T Consensus 99 ~~tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~L~~~~~~~~--- 141 (275)
T 3gfo_A 99 SASVYQDVSFGAVNMKLPE----------------------------------DEIRKRVDNALKRTGIEHLKDKPT--- 141 (275)
T ss_dssp SSBHHHHHHHHHHTSCCCH----------------------------------HHHHHHHHHHHHHTTCGGGTTSBG---
T ss_pred cCcHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhcCCc---
Confidence 7899999999765432110 001234788999999998877655
Q ss_pred ccccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEec
Q 001400 303 MLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLS 382 (1085)
Q Consensus 303 ~~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~ 382 (1085)
..|||||||||+|||||+.+|++|+|||||+|||+.++..+++.|+++++.. +++|+.++|+..++..+||+|++|+
T Consensus 142 --~~LSgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~-g~tvi~vtHdl~~~~~~~drv~~l~ 218 (275)
T 3gfo_A 142 --HCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKEL-GITIIIATHDIDIVPLYCDNVFVMK 218 (275)
T ss_dssp --GGSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHH-CCEEEEEESCCSSGGGGCSEEEEEE
T ss_pred --ccCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhC-CCEEEEEecCHHHHHHhCCEEEEEE
Confidence 4699999999999999999999999999999999999999999999987333 4556668899999999999999999
Q ss_pred CCeEEEecChhhHHH
Q 001400 383 EGQIVYQGPRVSVLD 397 (1085)
Q Consensus 383 ~G~iv~~G~~~~~~~ 397 (1085)
+|++++.|+++++..
T Consensus 219 ~G~i~~~g~~~~~~~ 233 (275)
T 3gfo_A 219 EGRVILQGNPKEVFA 233 (275)
T ss_dssp TTEEEEEECHHHHTH
T ss_pred CCEEEEECCHHHHhc
Confidence 999999999988753
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-40 Score=379.19 Aligned_cols=205 Identities=29% Similarity=0.406 Sum_probs=177.3
Q ss_pred cCCeE--EeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCCh------hcccceEEEEccC
Q 001400 839 EDRLQ--LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ------ETFARISGYCEQN 910 (1085)
Q Consensus 839 ~~~~~--~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~------~~~~~~~gy~~Q~ 910 (1085)
+++.. +|+||||+|++||+++|+|||||||||||++|+|... +.+|+|.++|.++.. ...++.+||++|+
T Consensus 13 y~~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~i~~~~~~~~~~~~r~ig~v~Q~ 90 (353)
T 1oxx_K 13 FKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDV--PSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQT 90 (353)
T ss_dssp EGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSC--CSEEEEEETTEEEEETTEESSCGGGSCEEEEETT
T ss_pred ECCEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEECcccccccCChhhCCEEEEeCC
Confidence 34445 9999999999999999999999999999999999876 568999999987532 2346789999999
Q ss_pred CCCCCCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEE
Q 001400 911 DIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIV 990 (1085)
Q Consensus 911 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~il 990 (1085)
+.+++.+||+||+.|+...+ .....+.++.++++++.++|.++.+... .+|||||||||+|||||+.+|++|
T Consensus 91 ~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~~~~-----~~LSGGq~QRvalAraL~~~P~lL 162 (353)
T 1oxx_K 91 WALYPNLTAFENIAFPLTNM---KMSKEEIRKRVEEVAKILDIHHVLNHFP-----RELSGAQQQRVALARALVKDPSLL 162 (353)
T ss_dssp SCCCTTSCHHHHHHGGGTTS---SCCHHHHHHHHHHHHHHTTCGGGTTSCG-----GGSCHHHHHHHHHHHHHTTCCSEE
T ss_pred CccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchHhcCCh-----hhCCHHHHHHHHHHHHHHhCCCEE
Confidence 99999999999999976433 2233445567899999999988877654 479999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHC-CceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCC
Q 001400 991 FMDEPTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1085)
Q Consensus 991 llDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~ 1055 (1085)
||||||||||+..+..+++.|+++.++ |.|||++|||++ ++...+|++++|++ |+++..|+..
T Consensus 163 LLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~~~~~adri~vl~~-G~i~~~g~~~ 226 (353)
T 1oxx_K 163 LLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPA-DIFAIADRVGVLVK-GKLVQVGKPE 226 (353)
T ss_dssp EEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECHH
T ss_pred EEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcCHH
Confidence 999999999999999999999999754 999999999986 57788999999985 7899888754
|
| >4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-40 Score=360.59 Aligned_cols=204 Identities=25% Similarity=0.369 Sum_probs=177.5
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCC---CceEEEEccCCCCCCCC
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP---PRTSAYVSQQDWQVAEM 224 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 224 (1085)
.++|+|||++|++||+++|+|||||||||||++|+|.++|+ +|+|.++|+++..... ++.++|++|++.+++.+
T Consensus 24 ~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 100 (266)
T 4g1u_C 24 QALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPS---HGECHLLGQNLNSWQPKALARTRAVMRQYSELAFPF 100 (266)
T ss_dssp EEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCS---SCEEEETTEETTTSCHHHHHHHEEEECSCCCCCSCC
T ss_pred eeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECCEECCcCCHHHHhheEEEEecCCccCCCC
Confidence 46999999999999999999999999999999999999886 9999999998876543 35689999999888889
Q ss_pred CHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCccc
Q 001400 225 TVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEML 304 (1085)
Q Consensus 225 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 304 (1085)
||+||+.|+...... .....+++++++.+||.+..+..+
T Consensus 101 tv~e~l~~~~~~~~~------------------------------------~~~~~~~~~~l~~~~l~~~~~~~~----- 139 (266)
T 4g1u_C 101 SVSEVIQMGRAPYGG------------------------------------SQDRQALQQVMAQTDCLALAQRDY----- 139 (266)
T ss_dssp BHHHHHHGGGTTSCS------------------------------------TTHHHHHHHHHHHTTCSTTTTSBG-----
T ss_pred CHHHHHHhhhhhcCc------------------------------------HHHHHHHHHHHHHcCChhHhcCCc-----
Confidence 999999987542210 011234788999999988877655
Q ss_pred ccCchhhhhHHHHHHHHhC------CCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeE
Q 001400 305 KGISGGQKKRLTTGELLVG------PARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDV 378 (1085)
Q Consensus 305 ~~LSGGqkqRvsia~al~~------~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i 378 (1085)
..|||||||||+|||||+. +|++|+|||||+|||+.++.++.+.|+++++. ++++|+.++|+.+++..+||+|
T Consensus 140 ~~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~-~~~tvi~vtHdl~~~~~~~d~v 218 (266)
T 4g1u_C 140 RVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQ-EPLAVCCVLHDLNLAALYADRI 218 (266)
T ss_dssp GGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHH-SSEEEEEECSCHHHHHHHCSEE
T ss_pred ccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHc-CCCEEEEEEcCHHHHHHhCCEE
Confidence 4699999999999999999 99999999999999999999999999998764 4567777999999999999999
Q ss_pred EEecCCeEEEecChhhHH
Q 001400 379 ILLSEGQIVYQGPRVSVL 396 (1085)
Q Consensus 379 i~L~~G~iv~~G~~~~~~ 396 (1085)
++|++|++++.|+++++.
T Consensus 219 ~vl~~G~i~~~g~~~~~~ 236 (266)
T 4g1u_C 219 MLLAQGKLVACGTPEEVL 236 (266)
T ss_dssp EEEETTEEEEEECHHHHC
T ss_pred EEEECCEEEEEcCHHHHh
Confidence 999999999999998873
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-40 Score=357.30 Aligned_cols=205 Identities=22% Similarity=0.340 Sum_probs=174.1
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCC--CCC---CCceEEEEccCCCCCC
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFK--EFV---PPRTSAYVSQQDWQVA 222 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~--~~~---~~~~~~yv~Q~d~~~~ 222 (1085)
+++|+|||+.|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++. ... .++.++||+|++.+++
T Consensus 37 ~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~~~i~~v~Q~~~l~~ 113 (263)
T 2olj_A 37 LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFD---EGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFP 113 (263)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEESSSTTCCHHHHHHHEEEECSSCCCCT
T ss_pred EEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCC---CcEEEECCEECCCccccHHHHhCcEEEEeCCCcCCC
Confidence 36999999999999999999999999999999999999876 999999999874 111 1346999999998899
Q ss_pred CCCHHHHHHHhh-hhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccC
Q 001400 223 EMTVRETLDFAG-QCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGD 301 (1085)
Q Consensus 223 ~lTV~E~l~f~~-~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 301 (1085)
.+||+||+.|+. +..+.. + . ....+++++++.+||.+..+..+
T Consensus 114 ~~tv~e~l~~~~~~~~~~~-~---------~------------------------~~~~~~~~~l~~~~L~~~~~~~~-- 157 (263)
T 2olj_A 114 HMTVLNNITLAPMKVRKWP-R---------E------------------------KAEAKAMELLDKVGLKDKAHAYP-- 157 (263)
T ss_dssp TSCHHHHHHHHHHHTSCCC-H---------H------------------------HHHHHHHHHHHHTTCGGGTTSCG--
T ss_pred CCCHHHHHHHHHHHHcCCC-H---------H------------------------HHHHHHHHHHHHCCCchHhcCCh--
Confidence 999999999864 222110 0 0 01224788999999988777655
Q ss_pred cccccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEe
Q 001400 302 EMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILL 381 (1085)
Q Consensus 302 ~~~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L 381 (1085)
..|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++++. +++|+.++|+..++..+||+|++|
T Consensus 158 ---~~LSgGqkQRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~--g~tvi~vtHd~~~~~~~~d~v~~l 232 (263)
T 2olj_A 158 ---DSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANE--GMTMVVVTHEMGFAREVGDRVLFM 232 (263)
T ss_dssp ---GGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHCSEEEEE
T ss_pred ---hhCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhC--CCEEEEEcCCHHHHHHhCCEEEEE
Confidence 469999999999999999999999999999999999999999999998764 455666889999999999999999
Q ss_pred cCCeEEEecChhhHH
Q 001400 382 SEGQIVYQGPRVSVL 396 (1085)
Q Consensus 382 ~~G~iv~~G~~~~~~ 396 (1085)
++|++++.|+++++.
T Consensus 233 ~~G~i~~~g~~~~~~ 247 (263)
T 2olj_A 233 DGGYIIEEGKPEDLF 247 (263)
T ss_dssp ETTEEEEEECHHHHH
T ss_pred ECCEEEEECCHHHHH
Confidence 999999999988774
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-40 Score=352.37 Aligned_cols=200 Identities=23% Similarity=0.319 Sum_probs=169.8
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCC-------CceEEEEccCCCC
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP-------PRTSAYVSQQDWQ 220 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~-------~~~~~yv~Q~d~~ 220 (1085)
+++|+|+|++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++||+|++.+
T Consensus 17 ~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l 93 (224)
T 2pcj_A 17 YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPT---EGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQFHYL 93 (224)
T ss_dssp EEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCS---EEEEEETTEECCSSCHHHHHHHHHHHEEEECSSCCC
T ss_pred EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCCCCHHHHHHHHhCcEEEEecCccc
Confidence 46999999999999999999999999999999999999876 9999999998765432 1469999999998
Q ss_pred CCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCccccccccc
Q 001400 221 VAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVG 300 (1085)
Q Consensus 221 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 300 (1085)
++.+||+||+.|+....+... . ..+.+++++++.+||.+..+..+
T Consensus 94 ~~~~tv~e~l~~~~~~~~~~~----------~------------------------~~~~~~~~~l~~~~l~~~~~~~~- 138 (224)
T 2pcj_A 94 IPELTALENVIVPMLKMGKPK----------K------------------------EAKERGEYLLSELGLGDKLSRKP- 138 (224)
T ss_dssp CTTSCHHHHHHHHHHHTTCCH----------H------------------------HHHHHHHHHHHHTTCTTCTTCCG-
T ss_pred CCCCCHHHHHHhHHHHcCCCH----------H------------------------HHHHHHHHHHHHcCCchhhhCCh-
Confidence 999999999998754322100 0 01224788999999988777655
Q ss_pred CcccccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEE
Q 001400 301 DEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVIL 380 (1085)
Q Consensus 301 ~~~~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~ 380 (1085)
..|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++++. + ++|+.++|+...+ .+||++++
T Consensus 139 ----~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~-g-~tvi~vtHd~~~~-~~~d~v~~ 211 (224)
T 2pcj_A 139 ----YELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEG-G-TSIVMVTHERELA-ELTHRTLE 211 (224)
T ss_dssp ----GGSCHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT-T-CEEEEECSCHHHH-TTSSEEEE
T ss_pred ----hhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-C-CEEEEEcCCHHHH-HhCCEEEE
Confidence 469999999999999999999999999999999999999999999998764 4 4555577887776 89999999
Q ss_pred ecCCeEEEecCh
Q 001400 381 LSEGQIVYQGPR 392 (1085)
Q Consensus 381 L~~G~iv~~G~~ 392 (1085)
|++|++++.|++
T Consensus 212 l~~G~i~~~g~~ 223 (224)
T 2pcj_A 212 MKDGKVVGEITR 223 (224)
T ss_dssp EETTEEEEEEEC
T ss_pred EECCEEEEEeee
Confidence 999999999974
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-40 Score=372.69 Aligned_cols=206 Identities=25% Similarity=0.367 Sum_probs=178.8
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCC-CceEEEEccCCCCCCCCCH
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP-PRTSAYVSQQDWQVAEMTV 226 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 226 (1085)
+++|+|+|+.|++||+++|+|||||||||||++|+|+++|+ +|+|.++|.++....+ ++.++||+|+..+++.+||
T Consensus 28 ~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv 104 (355)
T 1z47_A 28 ARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPT---KGDVWIGGKRVTDLPPQKRNVGLVFQNYALFQHMTV 104 (355)
T ss_dssp TTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTCCGGGSSEEEECGGGCCCTTSCH
T ss_pred CEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ccEEEECCEECCcCChhhCcEEEEecCcccCCCCCH
Confidence 35999999999999999999999999999999999999876 9999999998865433 4679999999999999999
Q ss_pred HHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCccccc
Q 001400 227 RETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKG 306 (1085)
Q Consensus 227 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 306 (1085)
+||+.|+.+..+... .+.+.+++++++.+||++..+..+ .+
T Consensus 105 ~eni~~~l~~~~~~~----------------------------------~~~~~~v~~~l~~~gL~~~~~r~~-----~~ 145 (355)
T 1z47_A 105 YDNVSFGLREKRVPK----------------------------------DEMDARVRELLRFMRLESYANRFP-----HE 145 (355)
T ss_dssp HHHHHHHHHHTTCCH----------------------------------HHHHHHHHHHHHHTTCGGGTTSCG-----GG
T ss_pred HHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCChhHhcCCc-----cc
Confidence 999999765432110 001234888999999998877655 46
Q ss_pred CchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEecCCeE
Q 001400 307 ISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQI 386 (1085)
Q Consensus 307 LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~~G~i 386 (1085)
|||||||||+|||||+.+|++|+|||||||||+.++.++.+.|+++.+..+ ++++.++|+..++..++|+|++|++|++
T Consensus 146 LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g-~tvi~vTHd~~~a~~~adri~vl~~G~i 224 (355)
T 1z47_A 146 LSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMG-VTSVFVTHDQEEALEVADRVLVLHEGNV 224 (355)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHT-CEEEEECSCHHHHHHHCSEEEEEETTEE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC-CEEEEECCCHHHHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999999876544 4556688999999999999999999999
Q ss_pred EEecChhhHH
Q 001400 387 VYQGPRVSVL 396 (1085)
Q Consensus 387 v~~G~~~~~~ 396 (1085)
+..|+++++.
T Consensus 225 ~~~g~~~~l~ 234 (355)
T 1z47_A 225 EQFGTPEEVY 234 (355)
T ss_dssp EEEECHHHHH
T ss_pred EEEcCHHHHH
Confidence 9999998874
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-40 Score=373.59 Aligned_cols=207 Identities=27% Similarity=0.366 Sum_probs=179.2
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCC-CceEEEEccCCCCCCCCCH
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP-PRTSAYVSQQDWQVAEMTV 226 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 226 (1085)
+++|+|+|+.+++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++....+ ++.++||+|++.+++++||
T Consensus 16 ~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv 92 (359)
T 2yyz_A 16 VKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPT---SGEIYFDDVLVNDIPPKYREVGMVFQNYALYPHMTV 92 (359)
T ss_dssp EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCGGGTTEEEECSSCCCCTTSCH
T ss_pred EEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCC---ccEEEECCEECCCCChhhCcEEEEecCcccCCCCCH
Confidence 46999999999999999999999999999999999999876 9999999998865433 4679999999999999999
Q ss_pred HHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCccccc
Q 001400 227 RETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKG 306 (1085)
Q Consensus 227 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 306 (1085)
+||+.|+.+..+.. +. +.+.+++++++.+||++..+..+ .+
T Consensus 93 ~eni~~~~~~~~~~----------~~------------------------~~~~~v~~~l~~~~L~~~~~r~~-----~~ 133 (359)
T 2yyz_A 93 FENIAFPLRARRIS----------KD------------------------EVEKRVVEIARKLLIDNLLDRKP-----TQ 133 (359)
T ss_dssp HHHHHGGGSSSCSH----------HH------------------------HTTHHHHHHHHHTTCGGGTTSCG-----GG
T ss_pred HHHHHHHHHhcCCC----------HH------------------------HHHHHHHHHHHHcCCchHhcCCh-----hh
Confidence 99999976543210 00 01235888999999998877655 46
Q ss_pred CchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEecCCeE
Q 001400 307 ISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQI 386 (1085)
Q Consensus 307 LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~~G~i 386 (1085)
|||||||||+|||||+.+|++|+|||||||||+.++.++.+.|+++.+..+ ++++.++|+..++..++|+|++|++|++
T Consensus 134 LSgGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g-~tvi~vTHd~~~~~~~adri~vl~~G~i 212 (359)
T 2yyz_A 134 LSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELG-ITSVYVTHDQAEAMTMASRIAVFNQGKL 212 (359)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHC-CEEEEEESCHHHHHHHCSEEEEEETTEE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcC-CEEEEEcCCHHHHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999999876544 4555688999999999999999999999
Q ss_pred EEecChhhHHH
Q 001400 387 VYQGPRVSVLD 397 (1085)
Q Consensus 387 v~~G~~~~~~~ 397 (1085)
+..|+++++.+
T Consensus 213 ~~~g~~~~l~~ 223 (359)
T 2yyz_A 213 VQYGTPDEVYD 223 (359)
T ss_dssp EEEECHHHHHH
T ss_pred EEeCCHHHHHh
Confidence 99999988743
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-40 Score=373.56 Aligned_cols=205 Identities=22% Similarity=0.261 Sum_probs=176.3
Q ss_pred cccccCCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCCh-hcccceEEEEccCCCC
Q 001400 835 EGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ-ETFARISGYCEQNDIH 913 (1085)
Q Consensus 835 ~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~-~~~~~~~gy~~Q~~~~ 913 (1085)
+.+.+++. +|+||||+|++||+++|+|||||||||||++|+|... +.+|+|.++|.++.. ...++.+||++|++.+
T Consensus 7 l~~~y~~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~l 83 (348)
T 3d31_A 7 LSRKWKNF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHV--PDSGRILLDGKDVTDLSPEKHDIAFVYQNYSL 83 (348)
T ss_dssp EEEECSSC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSC--CSEEEEEETTEECTTSCHHHHTCEEECTTCCC
T ss_pred EEEEECCE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCC--CCCcEEEECCEECCCCchhhCcEEEEecCccc
Confidence 33444556 9999999999999999999999999999999999876 568999999988643 2345679999999999
Q ss_pred CCCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q 001400 914 SPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMD 993 (1085)
Q Consensus 914 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlD 993 (1085)
++.+||+||+.|+...+... .. +.++++++.+++.++.+... .+|||||||||+|||||+.+|++||||
T Consensus 84 ~~~ltv~enl~~~~~~~~~~---~~---~~v~~~l~~~~L~~~~~~~~-----~~LSgGq~QRvalAraL~~~P~lLLLD 152 (348)
T 3d31_A 84 FPHMNVKKNLEFGMRMKKIK---DP---KRVLDTARDLKIEHLLDRNP-----LTLSGGEQQRVALARALVTNPKILLLD 152 (348)
T ss_dssp CTTSCHHHHHHHHHHHHCCC---CH---HHHHHHHHHTTCTTTTTSCG-----GGSCHHHHHHHHHHHHTTSCCSEEEEE
T ss_pred CCCCCHHHHHHHHHHHcCCC---HH---HHHHHHHHHcCCchHhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 99999999999986543211 11 55789999999988877654 479999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHH-CCceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCC
Q 001400 994 EPTSGLDARAAAIVMRTVRNIVN-TGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1085)
Q Consensus 994 EPtsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~ 1055 (1085)
|||||||+..+..+++.|+++.+ .|.|||++|||++ ++...+|++++|++ |+++..|+..
T Consensus 153 EP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~-~~~~~adri~vl~~-G~i~~~g~~~ 213 (348)
T 3d31_A 153 EPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQT-EARIMADRIAVVMD-GKLIQVGKPE 213 (348)
T ss_dssp SSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHH-HHHHHCSEEEEESS-SCEEEEECHH
T ss_pred CccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEECCHH
Confidence 99999999999999999999965 4999999999986 57788999999985 7888888754
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-40 Score=373.28 Aligned_cols=206 Identities=28% Similarity=0.391 Sum_probs=178.7
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCC-CceEEEEccCCCCCCCCCH
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP-PRTSAYVSQQDWQVAEMTV 226 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 226 (1085)
.++|+|+|++|++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++....+ ++.++||+|+..+++++||
T Consensus 16 ~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv 92 (362)
T 2it1_A 16 FTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPT---SGKIYFDEKDVTELPPKDRNVGLVFQNWALYPHMTV 92 (362)
T ss_dssp SEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCGGGTTEEEECTTCCCCTTSCH
T ss_pred EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHhHCcEEEEecCcccCCCCCH
Confidence 46999999999999999999999999999999999999876 9999999998865433 4679999999999999999
Q ss_pred HHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCccccc
Q 001400 227 RETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKG 306 (1085)
Q Consensus 227 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 306 (1085)
+||+.|+.+..+... .+.+.+++++++.+||++..+..+ .+
T Consensus 93 ~eni~~~~~~~~~~~----------------------------------~~~~~~v~~~l~~~~L~~~~~r~~-----~~ 133 (362)
T 2it1_A 93 YKNIAFPLELRKAPR----------------------------------EEIDKKVREVAKMLHIDKLLNRYP-----WQ 133 (362)
T ss_dssp HHHHHHHHHHTTCCH----------------------------------HHHHHHHHHHHHHTTCTTCTTCCG-----GG
T ss_pred HHHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCCchHhhCCh-----hh
Confidence 999999765432110 001234888999999998777654 46
Q ss_pred CchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEecCCeE
Q 001400 307 ISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQI 386 (1085)
Q Consensus 307 LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~~G~i 386 (1085)
|||||||||+|||||+.+|++|+|||||||||+.++.++.+.|+++.+..+ ++++.++|+..++..++|+|++|++|++
T Consensus 134 LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g-~tvi~vTHd~~~a~~~adri~vl~~G~i 212 (362)
T 2it1_A 134 LSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELG-ITTVYVTHDQAEALAMADRIAVIREGEI 212 (362)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHT-CEEEEEESCHHHHHHHCSEEEEEETTEE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCC-CEEEEECCCHHHHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999999876544 4555688999999999999999999999
Q ss_pred EEecChhhHH
Q 001400 387 VYQGPRVSVL 396 (1085)
Q Consensus 387 v~~G~~~~~~ 396 (1085)
+..|+++++.
T Consensus 213 ~~~g~~~~~~ 222 (362)
T 2it1_A 213 LQVGTPDEVY 222 (362)
T ss_dssp EEEECHHHHH
T ss_pred EEEcCHHHHH
Confidence 9999998874
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-40 Score=362.90 Aligned_cols=209 Identities=23% Similarity=0.384 Sum_probs=170.8
Q ss_pred cCCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCC--h---hcccceEEEEccCCCC
Q 001400 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKR--Q---ETFARISGYCEQNDIH 913 (1085)
Q Consensus 839 ~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~--~---~~~~~~~gy~~Q~~~~ 913 (1085)
+++..+|+||||+|++||++||+||||||||||+++|+|..+ +.+|+|.++|.++. . ..+++.+||++|++.+
T Consensus 31 y~~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~~~~~~~~~~~~~~~i~~v~Q~~~~ 108 (279)
T 2ihy_A 31 KQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEP--ATSGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLE 108 (279)
T ss_dssp ETTEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTBCCC---CCHHHHHTTEEEECHHHHT
T ss_pred ECCEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCeEEEECCEEcccccCCHHHHcCcEEEEEcCccc
Confidence 355689999999999999999999999999999999999876 56899999998764 2 2346679999998754
Q ss_pred C--CCCCHHHHHHHhhhhcCC-CcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEE
Q 001400 914 S--PGLTVLESLLFSAWLRLP-SEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIV 990 (1085)
Q Consensus 914 ~--~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~il 990 (1085)
. +.+||+||+.++...... .........+.++++++.+++.+..+... .+|||||||||+|||||+.+|+||
T Consensus 109 ~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgGqkqRv~lAraL~~~p~lL 183 (279)
T 2ihy_A 109 KFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYI-----GYLSTGEKQRVMIARALMGQPQVL 183 (279)
T ss_dssp TSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBG-----GGSCHHHHHHHHHHHHHHTCCSEE
T ss_pred ccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCCh-----hhCCHHHHHHHHHHHHHhCCCCEE
Confidence 3 356999999885321100 00111233456789999999988776654 479999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHCCceE--EEEecCccHHHHHhcCEEEEEecCcEEEEecCCCC
Q 001400 991 FMDEPTSGLDARAAAIVMRTVRNIVNTGRTI--VCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGS 1056 (1085)
Q Consensus 991 llDEPtsgLD~~~~~~i~~~l~~~~~~g~tv--i~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~~ 1056 (1085)
||||||+|||+.++..+++.|+++.++|+|| |++|||++ ++...||++++|++ |++++.|+..+
T Consensus 184 lLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~-~~~~~~d~v~~l~~-G~i~~~g~~~~ 249 (279)
T 2ihy_A 184 ILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIE-EITANFSKILLLKD-GQSIQQGAVED 249 (279)
T ss_dssp EEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGG-GCCTTCCEEEEEET-TEEEEEEEHHH
T ss_pred EEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEECCHHH
Confidence 9999999999999999999999997669999 99999986 46678999999985 78998887543
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-40 Score=360.71 Aligned_cols=200 Identities=25% Similarity=0.387 Sum_probs=169.8
Q ss_pred eEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCChhcccceEEEEccCC-CCCCCCCHH
Q 001400 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQND-IHSPGLTVL 920 (1085)
Q Consensus 842 ~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gy~~Q~~-~~~~~~tv~ 920 (1085)
+.+|+||||+|++||++||+||||||||||+++|+|..+ +.+|+|.++|.++....+++.+||++|++ ..++.+||+
T Consensus 20 ~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~--p~~G~I~~~g~~~~~~~~~~~i~~v~q~~~~~~~~~tv~ 97 (266)
T 2yz2_A 20 KKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIE--PTSGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAERVF 97 (266)
T ss_dssp EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEECCHHHHGGGEEEECSSGGGGCCCSSHH
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCcEEEECCEECchHHhhhhEEEEeccchhhcCCCcHH
Confidence 579999999999999999999999999999999999876 56899999998875434567799999995 456679999
Q ss_pred HHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCC--cccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCC
Q 001400 921 ESLLFSAWLRLPSEIELETQRAFVEEVMELVELT--SLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSG 998 (1085)
Q Consensus 921 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEPtsg 998 (1085)
||+.|+.....+. ....+.++++++.+++. +..+... .+|||||||||+|||||+.+|+||||||||+|
T Consensus 98 enl~~~~~~~~~~----~~~~~~~~~~l~~~gl~~~~~~~~~~-----~~LSgGq~qRv~lAraL~~~p~lllLDEPts~ 168 (266)
T 2yz2_A 98 DEVAFAVKNFYPD----RDPVPLVKKAMEFVGLDFDSFKDRVP-----FFLSGGEKRRVAIASVIVHEPDILILDEPLVG 168 (266)
T ss_dssp HHHHHTTTTTCTT----SCSHHHHHHHHHHTTCCHHHHTTCCG-----GGSCHHHHHHHHHHHHHTTCCSEEEEESTTTT
T ss_pred HHHHHHHHhcCCH----HHHHHHHHHHHHHcCcCCcccccCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEcCcccc
Confidence 9999864321111 11234578899999998 7766554 47999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCC
Q 001400 999 LDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1085)
Q Consensus 999 LD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~ 1054 (1085)
||+.++..+++.|+++.++|.|||++|||++ .+...||++++|++ |++++.|+.
T Consensus 169 LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~-~~~~~~d~v~~l~~-G~i~~~g~~ 222 (266)
T 2yz2_A 169 LDREGKTDLLRIVEKWKTLGKTVILISHDIE-TVINHVDRVVVLEK-GKKVFDGTR 222 (266)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCEEEEECSCCT-TTGGGCSEEEEEET-TEEEEEEEH
T ss_pred CCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 9999999999999999767999999999987 36667999999985 688888764
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-39 Score=354.51 Aligned_cols=206 Identities=25% Similarity=0.294 Sum_probs=175.3
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCC--CCceEEEEccCCCCCCCCC
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV--PPRTSAYVSQQDWQVAEMT 225 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~lT 225 (1085)
+++|+|+|+.|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++||+|++.+++.+|
T Consensus 28 ~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~lt 104 (256)
T 1vpl_A 28 KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPS---SGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQ 104 (256)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEETTTCHHHHHTTEEEECTTCCCCTTSB
T ss_pred EEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCccHHHHhhcEEEEcCCCCCCCCCc
Confidence 46999999999999999999999999999999999999876 999999999875421 1357999999998899999
Q ss_pred HHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCcccc
Q 001400 226 VRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLK 305 (1085)
Q Consensus 226 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 305 (1085)
|+||+.|.....+... . +...+++++++.+||++..++.+ .
T Consensus 105 v~enl~~~~~~~~~~~----------~------------------------~~~~~~~~~l~~~gL~~~~~~~~-----~ 145 (256)
T 1vpl_A 105 GIEYLRFVAGFYASSS----------S------------------------EIEEMVERATEIAGLGEKIKDRV-----S 145 (256)
T ss_dssp HHHHHHHHHHHHCCCH----------H------------------------HHHHHHHHHHHHHCCGGGGGSBG-----G
T ss_pred HHHHHHHHHHHcCCCh----------H------------------------HHHHHHHHHHHHCCCchHhcCCh-----h
Confidence 9999998654321100 0 00124778899999998877655 4
Q ss_pred cCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEecCCe
Q 001400 306 GISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQ 385 (1085)
Q Consensus 306 ~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~~G~ 385 (1085)
.|||||||||+|||||+.+|++|+|||||+|||+.++..+++.|+++.+. +++|+.++|+..++..+||++++|++|+
T Consensus 146 ~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~--g~tiiivtHd~~~~~~~~d~v~~l~~G~ 223 (256)
T 1vpl_A 146 TYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQE--GLTILVSSHNMLEVEFLCDRIALIHNGT 223 (256)
T ss_dssp GCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT--TCEEEEEECCHHHHTTTCSEEEEEETTE
T ss_pred hCCHHHHHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhC--CCEEEEEcCCHHHHHHHCCEEEEEECCE
Confidence 69999999999999999999999999999999999999999999998653 4556668899999999999999999999
Q ss_pred EEEecChhhHHH
Q 001400 386 IVYQGPRVSVLD 397 (1085)
Q Consensus 386 iv~~G~~~~~~~ 397 (1085)
+++.|+++++.+
T Consensus 224 i~~~g~~~~~~~ 235 (256)
T 1vpl_A 224 IVETGTVEELKE 235 (256)
T ss_dssp EEEEEEHHHHHH
T ss_pred EEEecCHHHHHH
Confidence 999999888754
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-40 Score=354.03 Aligned_cols=197 Identities=23% Similarity=0.336 Sum_probs=168.8
Q ss_pred EeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCCh-hcccceEEEEccCCCCCCCCCHHHH
Q 001400 844 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ-ETFARISGYCEQNDIHSPGLTVLES 922 (1085)
Q Consensus 844 ~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~-~~~~~~~gy~~Q~~~~~~~~tv~e~ 922 (1085)
+|+||||+|++ |++||+||||||||||+++|+|... +.+|+|.++|.++.. ...++.+||++|++.+++.+||+||
T Consensus 14 ~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~l~~~ltv~en 90 (240)
T 2onk_A 14 FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVK--PDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRN 90 (240)
T ss_dssp EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHH
T ss_pred EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECCcCchhhCcEEEEcCCCccCCCCcHHHH
Confidence 49999999999 9999999999999999999999876 568999999987643 2345679999999999999999999
Q ss_pred HHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHH
Q 001400 923 LLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDAR 1002 (1085)
Q Consensus 923 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEPtsgLD~~ 1002 (1085)
+.|+...+ .. ...++.++++++.+++.+..+... .+||||||||++|||||+.+|++|||||||+|||+.
T Consensus 91 l~~~~~~~---~~--~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGqkqRv~lAral~~~p~lllLDEPts~LD~~ 160 (240)
T 2onk_A 91 IAYGLRNV---ER--VERDRRVREMAEKLGIAHLLDRKP-----ARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLK 160 (240)
T ss_dssp HHTTCTTS---CH--HHHHHHHHHHHHTTTCTTTTTCCG-----GGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHH
T ss_pred HHHHHHHc---CC--chHHHHHHHHHHHcCCHHHhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHH
Confidence 98864321 11 122456789999999987776654 479999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHC-CceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCC
Q 001400 1003 AAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1085)
Q Consensus 1003 ~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~ 1055 (1085)
++..+++.|+++.++ |+|||++|||++ ++...||++++|++ |++++.|+..
T Consensus 161 ~~~~~~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~d~i~~l~~-G~i~~~g~~~ 212 (240)
T 2onk_A 161 TKGVLMEELRFVQREFDVPILHVTHDLI-EAAMLADEVAVMLN-GRIVEKGKLK 212 (240)
T ss_dssp HHHHHHHHHHHHHHHHTCCEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECHH
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEECCHH
Confidence 999999999998754 999999999986 46788999999985 7898888753
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-40 Score=372.83 Aligned_cols=206 Identities=25% Similarity=0.350 Sum_probs=172.2
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCC-CceEEEEccCCCCCCCCCH
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP-PRTSAYVSQQDWQVAEMTV 226 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 226 (1085)
+.+|+|+|+.|++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++....+ ++.++||+|+..+++++||
T Consensus 24 ~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv 100 (372)
T 1v43_A 24 FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPT---EGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTV 100 (372)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCGGGGTEEEEEC------CCCH
T ss_pred EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCC---ceEEEECCEECCCCChhhCcEEEEecCcccCCCCCH
Confidence 46999999999999999999999999999999999999876 9999999998865433 4679999999999999999
Q ss_pred HHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCccccc
Q 001400 227 RETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKG 306 (1085)
Q Consensus 227 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 306 (1085)
+||+.|+.+..+... . +.+.+++++++.+||.+..+..+ .+
T Consensus 101 ~eni~~~~~~~~~~~----------~------------------------~~~~~v~~~l~~~~L~~~~~r~~-----~~ 141 (372)
T 1v43_A 101 YENIAFPLKIKKFPK----------D------------------------EIDKRVRWAAELLQIEELLNRYP-----AQ 141 (372)
T ss_dssp HHHHHTTCC--CCCH----------H------------------------HHHHHHHHHHHHTTCGGGTTSCT-----TT
T ss_pred HHHHHHHHHhcCCCH----------H------------------------HHHHHHHHHHHHcCChhHhcCCh-----hh
Confidence 999999754332110 0 01234888999999998877655 46
Q ss_pred CchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEecCCeE
Q 001400 307 ISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQI 386 (1085)
Q Consensus 307 LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~~G~i 386 (1085)
|||||||||+|||||+.+|++|||||||||||+.++.++.+.|+++.+..+ ++++.++|+..++..++|+|++|++|++
T Consensus 142 LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g-~tvi~vTHd~~~a~~~adri~vl~~G~i 220 (372)
T 1v43_A 142 LSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLK-VTTIYVTHDQVEAMTMGDRIAVMNRGQL 220 (372)
T ss_dssp CCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHT-CEEEEEESCHHHHHHHCSEEEEEETTEE
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCC-CEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999999876544 4555688999999999999999999999
Q ss_pred EEecChhhHH
Q 001400 387 VYQGPRVSVL 396 (1085)
Q Consensus 387 v~~G~~~~~~ 396 (1085)
+..|+++++.
T Consensus 221 ~~~g~~~~l~ 230 (372)
T 1v43_A 221 LQIGSPTEVY 230 (372)
T ss_dssp EEEECHHHHH
T ss_pred EEeCCHHHHH
Confidence 9999998874
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-40 Score=370.69 Aligned_cols=201 Identities=24% Similarity=0.355 Sum_probs=176.3
Q ss_pred ecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCC-CceEEEEccCCCCCCCCCHHH
Q 001400 150 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP-PRTSAYVSQQDWQVAEMTVRE 228 (1085)
Q Consensus 150 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~E 228 (1085)
+|+|+|+.|++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++....+ ++.++||+|++.+++++||+|
T Consensus 15 ~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~e 91 (348)
T 3d31_A 15 SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPD---SGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKK 91 (348)
T ss_dssp EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCS---EEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHH
T ss_pred EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCC---CcEEEECCEECCCCchhhCcEEEEecCcccCCCCCHHH
Confidence 999999999999999999999999999999999999886 9999999998865332 367999999999999999999
Q ss_pred HHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCcccccCc
Q 001400 229 TLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGIS 308 (1085)
Q Consensus 229 ~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LS 308 (1085)
|+.|+.+..+... ..+++++++.+||++..|..+ .+||
T Consensus 92 nl~~~~~~~~~~~-------------------------------------~~~v~~~l~~~~L~~~~~~~~-----~~LS 129 (348)
T 3d31_A 92 NLEFGMRMKKIKD-------------------------------------PKRVLDTARDLKIEHLLDRNP-----LTLS 129 (348)
T ss_dssp HHHHHHHHHCCCC-------------------------------------HHHHHHHHHHTTCTTTTTSCG-----GGSC
T ss_pred HHHHHHHHcCCCH-------------------------------------HHHHHHHHHHcCCchHhcCCh-----hhCC
Confidence 9999754322100 024788999999998877655 4699
Q ss_pred hhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEecCCeEEE
Q 001400 309 GGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVY 388 (1085)
Q Consensus 309 GGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~~G~iv~ 388 (1085)
|||||||+|||||+.+|++|+|||||||||+.++.++.+.|+++.+..+ ++++.++|+..++..++|+|++|++|+++.
T Consensus 130 gGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g-~tii~vTHd~~~~~~~adri~vl~~G~i~~ 208 (348)
T 3d31_A 130 GGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNK-LTVLHITHDQTEARIMADRIAVVMDGKLIQ 208 (348)
T ss_dssp HHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHCSEEEEESSSCEEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcC-CEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999876544 455668899999999999999999999999
Q ss_pred ecChhhHH
Q 001400 389 QGPRVSVL 396 (1085)
Q Consensus 389 ~G~~~~~~ 396 (1085)
.|+++++.
T Consensus 209 ~g~~~~~~ 216 (348)
T 3d31_A 209 VGKPEEIF 216 (348)
T ss_dssp EECHHHHH
T ss_pred ECCHHHHH
Confidence 99998874
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-40 Score=357.01 Aligned_cols=210 Identities=26% Similarity=0.312 Sum_probs=166.6
Q ss_pred cccCCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCC--CCCCeeeeEEEEcCccCChh---c-ccceEEEEccC
Q 001400 837 VLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGR--KTGGIIEGDIYISGYPKRQE---T-FARISGYCEQN 910 (1085)
Q Consensus 837 ~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~--~~~~~~~G~i~i~g~~~~~~---~-~~~~~gy~~Q~ 910 (1085)
+.+++..+|+||||+|++||++||+||||||||||+++|+|. .. +.+|+|.++|.++... . .++.++|++|+
T Consensus 11 ~~y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~--p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~ 88 (250)
T 2d2e_A 11 ASIDGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYT--VERGEILLDGENILELSPDERARKGLFLAFQY 88 (250)
T ss_dssp EEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCE--EEEEEEEETTEECTTSCHHHHHHTTBCCCCCC
T ss_pred EEECCEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CCceEEEECCEECCCCCHHHHHhCcEEEeccC
Confidence 334557899999999999999999999999999999999997 33 6799999999876431 2 23458999999
Q ss_pred CCCCCCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCC-CcccccccCCCCCCC-CCHHHHHHHHHHHHHhcCCC
Q 001400 911 DIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVEL-TSLSGALIGLPGING-LSTEQRKRLTIAVELVANPS 988 (1085)
Q Consensus 911 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-~~~~~~~~~~~~~~~-LS~Gqrqrl~iA~aL~~~p~ 988 (1085)
+.+++.+||+||+.+.............+..+.++++++.+++ .+..+..+ .. ||||||||++|||||+.+|+
T Consensus 89 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~~~LSgGqkQrv~iAraL~~~p~ 163 (250)
T 2d2e_A 89 PVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYL-----NEGFSGGEKKRNEILQLLVLEPT 163 (250)
T ss_dssp CC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBT-----TCC----HHHHHHHHHHHHHCCS
T ss_pred CccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCc-----ccCCCHHHHHHHHHHHHHHcCCC
Confidence 9999999999999886431111111222334567889999999 46666543 46 99999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHh-cCEEEEEecCcEEEEecCCC
Q 001400 989 IVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFES-FDELLFMKRGGELIYAGPLG 1055 (1085)
Q Consensus 989 illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~-~d~il~l~~gG~~~~~g~~~ 1055 (1085)
||||||||+|||+.++..+++.|+++.++|+|||++|||++. +... +|++++|++ |++++.|+..
T Consensus 164 lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~-~~~~~~d~v~~l~~-G~i~~~g~~~ 229 (250)
T 2d2e_A 164 YAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRI-LNYIQPDKVHVMMD-GRVVATGGPE 229 (250)
T ss_dssp EEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGG-GGTSCCSEEEEEET-TEEEEEESHH
T ss_pred EEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-HHHhcCCEEEEEEC-CEEEEEeCHH
Confidence 999999999999999999999999986679999999999863 5455 599999985 7899888753
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-39 Score=356.64 Aligned_cols=216 Identities=23% Similarity=0.323 Sum_probs=173.7
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCC----CceEEEEccCCCCCCC
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP----PRTSAYVSQQDWQVAE 223 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 223 (1085)
+++|+|||+.|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++||+|++.+++.
T Consensus 20 ~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~ 96 (257)
T 1g6h_A 20 FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD---EGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKE 96 (257)
T ss_dssp EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGGG
T ss_pred EeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHHHHHhCCEEEEccCCccCCC
Confidence 36999999999999999999999999999999999999876 9999999998765322 2469999999988999
Q ss_pred CCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCcc
Q 001400 224 MTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEM 303 (1085)
Q Consensus 224 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 303 (1085)
+||+||+.|+......+ ... ..- ....... ......+++++++.+||++..++.+
T Consensus 97 ~tv~enl~~~~~~~~~~-~~~---~~~----~~~~~~~-------------~~~~~~~~~~~l~~~~l~~~~~~~~---- 151 (257)
T 1g6h_A 97 MTVLENLLIGEICPGES-PLN---SLF----YKKWIPK-------------EEEMVEKAFKILEFLKLSHLYDRKA---- 151 (257)
T ss_dssp SBHHHHHHGGGTSTTSC-HHH---HHH----HCSSCCC-------------CHHHHHHHHHHHHHTTCGGGTTSBG----
T ss_pred CcHHHHHHHHHhhhccC-ccc---ccc----cccccCC-------------HHHHHHHHHHHHHHcCCchhhCCCc----
Confidence 99999999864320000 000 000 0000000 0001234788999999988777665
Q ss_pred cccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEecC
Q 001400 304 LKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSE 383 (1085)
Q Consensus 304 ~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~~ 383 (1085)
..|||||||||+|||||+.+|++|+|||||+|||+.++..+++.|+++++. +++|+.++|+.+++..+||+|++|++
T Consensus 152 -~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~--g~tvi~vtHd~~~~~~~~d~v~~l~~ 228 (257)
T 1g6h_A 152 -GELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAK--GITFLIIEHRLDIVLNYIDHLYVMFN 228 (257)
T ss_dssp -GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT--TCEEEEECSCCSTTGGGCSEEEEEET
T ss_pred -hhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHC--CCEEEEEecCHHHHHHhCCEEEEEEC
Confidence 469999999999999999999999999999999999999999999998754 45566688999999999999999999
Q ss_pred CeEEEecChhh
Q 001400 384 GQIVYQGPRVS 394 (1085)
Q Consensus 384 G~iv~~G~~~~ 394 (1085)
|++++.|++++
T Consensus 229 G~i~~~g~~~~ 239 (257)
T 1g6h_A 229 GQIIAEGRGEE 239 (257)
T ss_dssp TEEEEEEESHH
T ss_pred CEEEEEeCHHH
Confidence 99999999887
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-39 Score=372.87 Aligned_cols=206 Identities=27% Similarity=0.357 Sum_probs=178.0
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCC------CCC-CceEEEEccCCCC
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKE------FVP-PRTSAYVSQQDWQ 220 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~------~~~-~~~~~yv~Q~d~~ 220 (1085)
.++|+|+|+.|++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++.. ..+ ++.++||+|+..+
T Consensus 16 ~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~~~~~~~~~~~~~~~r~ig~v~Q~~~l 92 (372)
T 1g29_1 16 VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPS---RGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYAL 92 (372)
T ss_dssp EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCS---EEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCCC
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCC---ccEEEECCEECccccccccCCHhHCCEEEEeCCCcc
Confidence 46999999999999999999999999999999999999876 9999999988744 222 4679999999999
Q ss_pred CCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCccccccccc
Q 001400 221 VAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVG 300 (1085)
Q Consensus 221 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 300 (1085)
++++||+||+.|+.+..+... .+.+.+++++++.+||++..+..+
T Consensus 93 ~~~ltv~eni~~~~~~~~~~~----------------------------------~~~~~~v~~~l~~~~L~~~~~r~~- 137 (372)
T 1g29_1 93 YPHMTVYDNIAFPLKLRKVPR----------------------------------QEIDQRVREVAELLGLTELLNRKP- 137 (372)
T ss_dssp CTTSCHHHHHHHHHHHTTCCH----------------------------------HHHHHHHHHHHHHHTCGGGTTCCG-
T ss_pred CCCCCHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHCCCchHhcCCc-
Confidence 999999999999865432110 001234888999999998877655
Q ss_pred CcccccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEE
Q 001400 301 DEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVIL 380 (1085)
Q Consensus 301 ~~~~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~ 380 (1085)
.+|||||||||+|||||+.+|++|||||||||||+.++.++.+.|+++.+..+ ++++.++|+..++..++|+|++
T Consensus 138 ----~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g-~tvi~vTHd~~~a~~~adri~v 212 (372)
T 1g29_1 138 ----RELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLG-VTTIYVTHDQVEAMTMGDRIAV 212 (372)
T ss_dssp ----GGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHT-CEEEEEESCHHHHHHHCSEEEE
T ss_pred ----ccCCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcC-CEEEEECCCHHHHHHhCCEEEE
Confidence 46999999999999999999999999999999999999999999999876544 4555688999999999999999
Q ss_pred ecCCeEEEecChhhHH
Q 001400 381 LSEGQIVYQGPRVSVL 396 (1085)
Q Consensus 381 L~~G~iv~~G~~~~~~ 396 (1085)
|++|+++..|+++++.
T Consensus 213 l~~G~i~~~g~~~~l~ 228 (372)
T 1g29_1 213 MNRGVLQQVGSPDEVY 228 (372)
T ss_dssp EETTEEEEEECHHHHH
T ss_pred EeCCEEEEeCCHHHHH
Confidence 9999999999998874
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-39 Score=351.21 Aligned_cols=204 Identities=26% Similarity=0.365 Sum_probs=171.4
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCC----CceEEEEccCCCCCCC
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP----PRTSAYVSQQDWQVAE 223 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 223 (1085)
+++|+|+|+.|++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++..... ++.++||+|++.+++.
T Consensus 19 ~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~ 95 (240)
T 1ji0_A 19 IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQ---KGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPE 95 (240)
T ss_dssp EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTT
T ss_pred eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCCHHHHHhCCEEEEecCCccCCC
Confidence 46999999999999999999999999999999999999876 9999999998865432 2359999999998999
Q ss_pred CCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhC-CcccccccccCc
Q 001400 224 MTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILG-LDTCADTLVGDE 302 (1085)
Q Consensus 224 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lg-L~~~~dt~vg~~ 302 (1085)
+||+||+.|+.... .. . ......++.+++.++ |.+..+..+
T Consensus 96 ltv~enl~~~~~~~-~~-~---------------------------------~~~~~~~~~~l~~~~~l~~~~~~~~--- 137 (240)
T 1ji0_A 96 LTVYENLMMGAYNR-KD-K---------------------------------EGIKRDLEWIFSLFPRLKERLKQLG--- 137 (240)
T ss_dssp SBHHHHHHGGGTTC-CC-S---------------------------------SHHHHHHHHHHHHCHHHHTTTTSBS---
T ss_pred CcHHHHHHHhhhcC-CC-H---------------------------------HHHHHHHHHHHHHcccHhhHhcCCh---
Confidence 99999999863211 00 0 001123677888884 877666554
Q ss_pred ccccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEec
Q 001400 303 MLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLS 382 (1085)
Q Consensus 303 ~~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~ 382 (1085)
..|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++++ . +++|+.++|+..++..+||+|++|+
T Consensus 138 --~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~-~-g~tvi~vtHd~~~~~~~~d~v~~l~ 213 (240)
T 1ji0_A 138 --GTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQ-E-GTTILLVEQNALGALKVAHYGYVLE 213 (240)
T ss_dssp --SSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH-T-TCCEEEEESCHHHHHHHCSEEEEEE
T ss_pred --hhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-C-CCEEEEEecCHHHHHHhCCEEEEEE
Confidence 46999999999999999999999999999999999999999999999875 3 4455567899999999999999999
Q ss_pred CCeEEEecChhhHH
Q 001400 383 EGQIVYQGPRVSVL 396 (1085)
Q Consensus 383 ~G~iv~~G~~~~~~ 396 (1085)
+|++++.|+++++.
T Consensus 214 ~G~i~~~g~~~~~~ 227 (240)
T 1ji0_A 214 TGQIVLEGKASELL 227 (240)
T ss_dssp TTEEEEEEEHHHHH
T ss_pred CCEEEEEcCHHHHh
Confidence 99999999987764
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-40 Score=358.63 Aligned_cols=205 Identities=23% Similarity=0.269 Sum_probs=173.9
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCC----------CC------CCceE
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKE----------FV------PPRTS 211 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~----------~~------~~~~~ 211 (1085)
.++|+|||+.|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.. .. .++.+
T Consensus 19 ~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i 95 (262)
T 1b0u_A 19 HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPS---EGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRL 95 (262)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHE
T ss_pred EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEccccccccccccccChhhHHHHhcce
Confidence 46999999999999999999999999999999999999876 9999999988751 11 13569
Q ss_pred EEEccCCCCCCCCCHHHHHHHhh-hhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhC
Q 001400 212 AYVSQQDWQVAEMTVRETLDFAG-QCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILG 290 (1085)
Q Consensus 212 ~yv~Q~d~~~~~lTV~E~l~f~~-~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lg 290 (1085)
+||+|++.+++.+||+||+.|+. ...+.. + . ....+++++++.+|
T Consensus 96 ~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~-~---------~------------------------~~~~~~~~~l~~~~ 141 (262)
T 1b0u_A 96 TMVFQHFNLWSHMTVLENVMEAPIQVLGLS-K---------H------------------------DARERALKYLAKVG 141 (262)
T ss_dssp EEECSSCCCCTTSCHHHHHHHHHHHTTCCC-H---------H------------------------HHHHHHHHHHHHTT
T ss_pred EEEecCcccCCCCcHHHHHHhhHHHhcCCC-H---------H------------------------HHHHHHHHHHHHcC
Confidence 99999998999999999999853 222110 0 0 01224788999999
Q ss_pred Cccc-ccccccCcccccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChh
Q 001400 291 LDTC-ADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAP 369 (1085)
Q Consensus 291 L~~~-~dt~vg~~~~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~ 369 (1085)
|.+. .+..+ ..|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++++. +++|+.++|+..
T Consensus 142 L~~~~~~~~~-----~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~--g~tvi~vtHd~~ 214 (262)
T 1b0u_A 142 IDERAQGKYP-----VHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEE--GKTMVVVTHEMG 214 (262)
T ss_dssp CCHHHHTSCG-----GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHT--TCCEEEECSCHH
T ss_pred CCchhhcCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhC--CCEEEEEeCCHH
Confidence 9887 77655 469999999999999999999999999999999999999999999998764 445566889999
Q ss_pred HHHhhcCeEEEecCCeEEEecChhhHH
Q 001400 370 EAYELFDDVILLSEGQIVYQGPRVSVL 396 (1085)
Q Consensus 370 ~~~~~~D~ii~L~~G~iv~~G~~~~~~ 396 (1085)
++..+||+|++|++|++++.|+++++.
T Consensus 215 ~~~~~~d~v~~l~~G~i~~~g~~~~~~ 241 (262)
T 1b0u_A 215 FARHVSSHVIFLHQGKIEEEGDPEQVF 241 (262)
T ss_dssp HHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999988774
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-40 Score=371.31 Aligned_cols=204 Identities=22% Similarity=0.285 Sum_probs=176.7
Q ss_pred ecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCC-----CC-CCceEEEEccCCCCCCC
Q 001400 150 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKE-----FV-PPRTSAYVSQQDWQVAE 223 (1085)
Q Consensus 150 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~-----~~-~~~~~~yv~Q~d~~~~~ 223 (1085)
+|+|+|++|++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++.. .. .++.++||+|+..++++
T Consensus 20 vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~~~~~~~r~ig~v~Q~~~l~~~ 96 (353)
T 1oxx_K 20 ALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPS---TGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPN 96 (353)
T ss_dssp EEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCS---EEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTT
T ss_pred eEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECcccccccCChhhCCEEEEeCCCccCCC
Confidence 999999999999999999999999999999999999876 9999999988743 22 24679999999999999
Q ss_pred CCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCcc
Q 001400 224 MTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEM 303 (1085)
Q Consensus 224 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 303 (1085)
+||+||+.|+.+..+... . +.+.+++++++.+||++..+..+
T Consensus 97 ltv~eni~~~~~~~~~~~----------~------------------------~~~~~v~~~l~~~~L~~~~~~~~---- 138 (353)
T 1oxx_K 97 LTAFENIAFPLTNMKMSK----------E------------------------EIRKRVEEVAKILDIHHVLNHFP---- 138 (353)
T ss_dssp SCHHHHHHGGGTTSSCCH----------H------------------------HHHHHHHHHHHHTTCGGGTTSCG----
T ss_pred CCHHHHHHHHHHHcCCCH----------H------------------------HHHHHHHHHHHHcCCchHhcCCh----
Confidence 999999999765432110 0 01234888999999998877655
Q ss_pred cccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEecC
Q 001400 304 LKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSE 383 (1085)
Q Consensus 304 ~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~~ 383 (1085)
.+|||||||||+|||||+.+|++|+|||||||||+.++.++.+.|+++.+..+ ++++.++|+..++..++|+|++|++
T Consensus 139 -~~LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g-~tvi~vTHd~~~~~~~adri~vl~~ 216 (353)
T 1oxx_K 139 -RELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLG-VTLLVVSHDPADIFAIADRVGVLVK 216 (353)
T ss_dssp -GGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHC-CEEEEEESCHHHHHHHCSEEEEEET
T ss_pred -hhCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcC-CEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 46999999999999999999999999999999999999999999999876544 4555688999999999999999999
Q ss_pred CeEEEecChhhHH
Q 001400 384 GQIVYQGPRVSVL 396 (1085)
Q Consensus 384 G~iv~~G~~~~~~ 396 (1085)
|+++..|+++++.
T Consensus 217 G~i~~~g~~~~l~ 229 (353)
T 1oxx_K 217 GKLVQVGKPEDLY 229 (353)
T ss_dssp TEEEEEECHHHHH
T ss_pred CEEEEEcCHHHHH
Confidence 9999999998874
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-39 Score=360.81 Aligned_cols=208 Identities=23% Similarity=0.346 Sum_probs=166.9
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCC---CceEEEEccCCCCCCCC
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP---PRTSAYVSQQDWQVAEM 224 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 224 (1085)
..+|+|||+.|++|++++|+||||||||||+++|+|+++|. +|+|.++|.++..... ++.++||+|++.+|+ .
T Consensus 67 ~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~---~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~-~ 142 (306)
T 3nh6_A 67 RETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDIS---SGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFN-D 142 (306)
T ss_dssp CEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCS---EEEEEETTEETTSBCHHHHHHTEEEECSSCCCCS-E
T ss_pred CceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCC---CcEEEECCEEcccCCHHHHhcceEEEecCCccCc-c
Confidence 46999999999999999999999999999999999999886 9999999999876542 467999999998775 6
Q ss_pred CHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCccc
Q 001400 225 TVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEML 304 (1085)
Q Consensus 225 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 304 (1085)
||+|||.|+..... .+.+.++. +..+ ....++ .++...+|.+|+ ..
T Consensus 143 Tv~eNi~~~~~~~~----~~~~~~~~---~~~~------------------------l~~~i~--~lp~gl~t~~~~-~g 188 (306)
T 3nh6_A 143 TIADNIRYGRVTAG----NDEVEAAA---QAAG------------------------IHDAIM--AFPEGYRTQVGE-RG 188 (306)
T ss_dssp EHHHHHHTTSTTCC----HHHHHHHH---HHHT------------------------CHHHHH--HSTTGGGCEEST-TS
T ss_pred cHHHHHHhhcccCC----HHHHHHHH---HHhC------------------------cHHHHH--hccchhhhHhcC-Cc
Confidence 99999998642110 01000000 0000 111111 244567888885 45
Q ss_pred ccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEecCC
Q 001400 305 KGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEG 384 (1085)
Q Consensus 305 ~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~~G 384 (1085)
.+|||||||||+|||||+.+|+||+|||||||||+.+...|.+.|+++.+ ++| +|+++|....+.. ||+|++|++|
T Consensus 189 ~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~--~~T-vi~itH~l~~~~~-aD~i~vl~~G 264 (306)
T 3nh6_A 189 LKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCA--NRT-TIVVAHRLSTVVN-ADQILVIKDG 264 (306)
T ss_dssp BCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHT--TSE-EEEECCSHHHHHT-CSEEEEEETT
T ss_pred CCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcC--CCE-EEEEEcChHHHHc-CCEEEEEECC
Confidence 67999999999999999999999999999999999999999999998854 444 5557888888766 9999999999
Q ss_pred eEEEecChhhHHH
Q 001400 385 QIVYQGPRVSVLD 397 (1085)
Q Consensus 385 ~iv~~G~~~~~~~ 397 (1085)
++++.|+++++++
T Consensus 265 ~iv~~G~~~el~~ 277 (306)
T 3nh6_A 265 CIVERGRHEALLS 277 (306)
T ss_dssp EEEEEECHHHHHH
T ss_pred EEEEECCHHHHHh
Confidence 9999999998865
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-38 Score=347.40 Aligned_cols=195 Identities=24% Similarity=0.347 Sum_probs=164.7
Q ss_pred CeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCChhcccceEEEEccCCCCCCCCCHH
Q 001400 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVL 920 (1085)
Q Consensus 841 ~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gy~~Q~~~~~~~~tv~ 920 (1085)
+..+|+||||+|++||++||+||||||||||+++|+|..+ +.+|+|. +++.+||++|++.+++.+||+
T Consensus 17 ~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~I~----------~~~~i~~v~q~~~~~~~~tv~ 84 (253)
T 2nq2_C 17 ENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHR--PIQGKIE----------VYQSIGFVPQFFSSPFAYSVL 84 (253)
T ss_dssp TTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSC--CSEEEEE----------ECSCEEEECSCCCCSSCCBHH
T ss_pred CCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEE----------EeccEEEEcCCCccCCCCCHH
Confidence 5679999999999999999999999999999999999876 4689997 245699999999988899999
Q ss_pred HHHHHhhhhcCC-CcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCC
Q 001400 921 ESLLFSAWLRLP-SEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGL 999 (1085)
Q Consensus 921 e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEPtsgL 999 (1085)
||+.++...... .........+.++++++.+++.+..+... .+||||||||++|||||+.+|+||||||||+||
T Consensus 85 enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq~qrv~lAraL~~~p~lllLDEPts~L 159 (253)
T 2nq2_C 85 DIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREF-----TSLSGGQRQLILIARAIASECKLILLDEPTSAL 159 (253)
T ss_dssp HHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBG-----GGSCHHHHHHHHHHHHHHTTCSEEEESSSSTTS
T ss_pred HHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccC
Confidence 999986432210 00011233456789999999988776654 479999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHC-CceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCC
Q 001400 1000 DARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1085)
Q Consensus 1000 D~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~ 1055 (1085)
|+.++..+++.|+++.++ |+|||++|||++ .+...||++++|++ |+ ++.|+..
T Consensus 160 D~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~d~v~~l~~-G~-~~~g~~~ 213 (253)
T 2nq2_C 160 DLANQDIVLSLLIDLAQSQNMTVVFTTHQPN-QVVAIANKTLLLNK-QN-FKFGETR 213 (253)
T ss_dssp CHHHHHHHHHHHHHHHHTSCCEEEEEESCHH-HHHHHCSEEEEEET-TE-EEEEEHH
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEeC-Ce-EecCCHH
Confidence 999999999999999776 999999999986 46678999999986 56 7777654
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-39 Score=348.96 Aligned_cols=201 Identities=22% Similarity=0.321 Sum_probs=172.0
Q ss_pred ecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCC-CCceEEEEccCCCCCCCCCHHH
Q 001400 150 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV-PPRTSAYVSQQDWQVAEMTVRE 228 (1085)
Q Consensus 150 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~-~~~~~~yv~Q~d~~~~~lTV~E 228 (1085)
+|+|+|+.+++ ++++|+|||||||||||++|+|.++|+ +|+|.++|+++.... .++.++||+|++.+++.+||+|
T Consensus 14 ~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~i~~v~q~~~l~~~ltv~e 89 (240)
T 2onk_A 14 FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPD---RGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYR 89 (240)
T ss_dssp EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHH
T ss_pred EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCchhhCcEEEEcCCCccCCCCcHHH
Confidence 49999999999 999999999999999999999999876 999999999875432 3467999999999999999999
Q ss_pred HHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCcccccCc
Q 001400 229 TLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGIS 308 (1085)
Q Consensus 229 ~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LS 308 (1085)
|+.|+....+. . . .+.+++++++.+||.+..+..+ ..||
T Consensus 90 nl~~~~~~~~~-------~---~--------------------------~~~~~~~~l~~~~l~~~~~~~~-----~~LS 128 (240)
T 2onk_A 90 NIAYGLRNVER-------V---E--------------------------RDRRVREMAEKLGIAHLLDRKP-----ARLS 128 (240)
T ss_dssp HHHTTCTTSCH-------H---H--------------------------HHHHHHHHHHTTTCTTTTTCCG-----GGSC
T ss_pred HHHHHHHHcCC-------c---h--------------------------HHHHHHHHHHHcCCHHHhcCCh-----hhCC
Confidence 99986432210 0 0 0123778899999988777655 4699
Q ss_pred hhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEecCCeEEE
Q 001400 309 GGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVY 388 (1085)
Q Consensus 309 GGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~~G~iv~ 388 (1085)
|||||||+|||||+.+|++|+|||||+|||+.++..+++.|+++++..+. +|+.++|+.+++..+||++++|++|++++
T Consensus 129 gGqkqRv~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~-tvi~vtHd~~~~~~~~d~i~~l~~G~i~~ 207 (240)
T 2onk_A 129 GGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDV-PILHVTHDLIEAAMLADEVAVMLNGRIVE 207 (240)
T ss_dssp HHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTC-CEEEEESCHHHHHHHCSEEEEEETTEEEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCC-EEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999998654344 45557899999999999999999999999
Q ss_pred ecChhhHH
Q 001400 389 QGPRVSVL 396 (1085)
Q Consensus 389 ~G~~~~~~ 396 (1085)
.|+++++.
T Consensus 208 ~g~~~~~~ 215 (240)
T 2onk_A 208 KGKLKELF 215 (240)
T ss_dssp EECHHHHH
T ss_pred ECCHHHHH
Confidence 99988774
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-39 Score=351.21 Aligned_cols=211 Identities=23% Similarity=0.299 Sum_probs=169.7
Q ss_pred cCCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCCh---hcc-cceEEEEccCCCCC
Q 001400 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETF-ARISGYCEQNDIHS 914 (1085)
Q Consensus 839 ~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~---~~~-~~~~gy~~Q~~~~~ 914 (1085)
+++..+|+||||+|++||++||+||||||||||+++|+|.....+.+|+|.++|.++.. ... ++.+||++|++.++
T Consensus 30 y~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~Q~~~l~ 109 (267)
T 2zu0_C 30 VEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGEGIFMAFQYPVEI 109 (267)
T ss_dssp ETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHHHTEEEECSSCCCC
T ss_pred ECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhhCCEEEEccCcccc
Confidence 34568999999999999999999999999999999999973222578999999987642 122 33589999999999
Q ss_pred CCCCHHHHHHHhhh-hc---CCCcccHHHHHHHHHHHHHHcCCC-cccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCE
Q 001400 915 PGLTVLESLLFSAW-LR---LPSEIELETQRAFVEEVMELVELT-SLSGALIGLPGINGLSTEQRKRLTIAVELVANPSI 989 (1085)
Q Consensus 915 ~~~tv~e~l~~~~~-~~---~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~i 989 (1085)
+.+||.|++.+... .+ ........+..+.++++++.+++. ...+..+. .+|||||||||+|||||+.+|+|
T Consensus 110 ~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~----~~LSgGq~QRv~iAraL~~~p~l 185 (267)
T 2zu0_C 110 PGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVN----VGFSGGEKKRNDILQMAVLEPEL 185 (267)
T ss_dssp TTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTT----TTCCHHHHHHHHHHHHHHHCCSE
T ss_pred ccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcc----cCCCHHHHHHHHHHHHHHhCCCE
Confidence 99999999987531 11 111112233345688999999996 45554431 24999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHh-cCEEEEEecCcEEEEecCCC
Q 001400 990 VFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFES-FDELLFMKRGGELIYAGPLG 1055 (1085)
Q Consensus 990 lllDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~-~d~il~l~~gG~~~~~g~~~ 1055 (1085)
|||||||+|||+.++..+++.|+++.++|+|||++|||++. +... ||++++|++ |++++.|+..
T Consensus 186 LlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~-~~~~~~d~v~~l~~-G~i~~~g~~~ 250 (267)
T 2zu0_C 186 CILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRI-LDYIKPDYVHVLYQ-GRIVKSGDFT 250 (267)
T ss_dssp EEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGG-GGTSCCSEEEEEET-TEEEEEECTT
T ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHH-HHhhcCCEEEEEEC-CEEEEEcCHH
Confidence 99999999999999999999999986669999999999863 4444 899999985 7899988764
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-39 Score=348.36 Aligned_cols=197 Identities=26% Similarity=0.413 Sum_probs=163.5
Q ss_pred CeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCCh---hcccceEEEEccCCCCCCCC
Q 001400 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFARISGYCEQNDIHSPGL 917 (1085)
Q Consensus 841 ~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gy~~Q~~~~~~~~ 917 (1085)
+..+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.++|.++.. ..+++.+||++|++.+++ .
T Consensus 21 ~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~l~~-~ 97 (247)
T 2ff7_A 21 SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI--PENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLN-R 97 (247)
T ss_dssp SCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCTT-S
T ss_pred CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEhhhCCHHHHHhcEEEEeCCCcccc-c
Confidence 4679999999999999999999999999999999999876 468999999988643 335667999999998876 5
Q ss_pred CHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccc-------cCCCCCCCCCHHHHHHHHHHHHHhcCCCEE
Q 001400 918 TVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGAL-------IGLPGINGLSTEQRKRLTIAVELVANPSIV 990 (1085)
Q Consensus 918 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-------~~~~~~~~LS~Gqrqrl~iA~aL~~~p~il 990 (1085)
||+||+.|+.. ... .+.++++++.+++.+..+.. .+. .+.+|||||||||+|||||+.+|+||
T Consensus 98 tv~enl~~~~~-----~~~----~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~-~~~~LSgGq~qRv~iAraL~~~p~ll 167 (247)
T 2ff7_A 98 SIIDNISLANP-----GMS----VEKVIYAAKLAGAHDFISELREGYNTIVGE-QGAGLSGGQRQRIAIARALVNNPKIL 167 (247)
T ss_dssp BHHHHHTTTCT-----TCC----HHHHHHHHHHHTCHHHHHTSTTGGGCBCST-TTTCCCHHHHHHHHHHHHHTTCCSEE
T ss_pred cHHHHHhccCC-----CCC----HHHHHHHHHHhChHHHHHhCcchhhhhhhC-CCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 99999987521 111 13356778888876554432 111 23579999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCC
Q 001400 991 FMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1085)
Q Consensus 991 llDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~ 1054 (1085)
||||||+|||+.++..+++.|+++. +|+|||++||+++. + +.||++++|++ |++++.|+.
T Consensus 168 lLDEPts~LD~~~~~~i~~~l~~~~-~g~tviivtH~~~~-~-~~~d~v~~l~~-G~i~~~g~~ 227 (247)
T 2ff7_A 168 IFDEATSALDYESEHVIMRNMHKIC-KGRTVIIIAHRLST-V-KNADRIIVMEK-GKIVEQGKH 227 (247)
T ss_dssp EECCCCSCCCHHHHHHHHHHHHHHH-TTSEEEEECSSGGG-G-TTSSEEEEEET-TEEEEEECH
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHHH-H-HhCCEEEEEEC-CEEEEECCH
Confidence 9999999999999999999999984 69999999999863 4 56999999985 788888874
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-39 Score=347.75 Aligned_cols=195 Identities=23% Similarity=0.350 Sum_probs=168.5
Q ss_pred EEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCCh---hcccceEEEEccCCCCCCCCCH
Q 001400 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFARISGYCEQNDIHSPGLTV 919 (1085)
Q Consensus 843 ~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gy~~Q~~~~~~~~tv 919 (1085)
.+|+||||+|++||+++|+||||||||||+++|+|... +. |+|.++|.++.. ..+++.+||++|++.+++.+||
T Consensus 14 ~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~--p~-G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv 90 (249)
T 2qi9_C 14 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS--GK-GSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPV 90 (249)
T ss_dssp TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC--CE-EEEEETTEEGGGSCHHHHHHHEEEECSCCCCCTTCBH
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CC-eEEEECCEECCcCCHHHHhceEEEECCCCccCCCCcH
Confidence 47899999999999999999999999999999999876 56 999999987632 3356679999999998889999
Q ss_pred HHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCC-------EEEE
Q 001400 920 LESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPS-------IVFM 992 (1085)
Q Consensus 920 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~-------illl 992 (1085)
+||+.++.. +. .. .+.++++++.+++.+..+... .+||||||||++|||||+.+|+ +|||
T Consensus 91 ~e~l~~~~~---~~-~~----~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllL 157 (249)
T 2qi9_C 91 WHYLTLHQH---DK-TR----TELLNDVAGALALDDKLGRST-----NQLSGGEWQRVRLAAVVLQITPQANPAGQLLLL 157 (249)
T ss_dssp HHHHHTTCS---ST-TC----HHHHHHHHHHTTCGGGTTSBG-----GGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEE
T ss_pred HHHHHHhhc---cC-Cc----HHHHHHHHHHcCChhHhcCCh-----hhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEE
Confidence 999987531 11 11 345788999999988776653 4799999999999999999999 9999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCC
Q 001400 993 DEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1085)
Q Consensus 993 DEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~ 1055 (1085)
||||+|||+.++..+++.|+++.++|+|||++|||++ .+...+|++++|++ |++++.|+..
T Consensus 158 DEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~-~~~~~~d~v~~l~~-G~i~~~g~~~ 218 (249)
T 2qi9_C 158 DEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLN-HTLRHAHRAWLLKG-GKMLASGRRE 218 (249)
T ss_dssp SSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEET-TEEEEEEEHH
T ss_pred ECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCHH
Confidence 9999999999999999999999777999999999986 46678999999985 7888888654
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-39 Score=353.31 Aligned_cols=203 Identities=25% Similarity=0.305 Sum_probs=162.1
Q ss_pred eEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCCh---hcccceEEEEccCCCCCCCCC
Q 001400 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFARISGYCEQNDIHSPGLT 918 (1085)
Q Consensus 842 ~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gy~~Q~~~~~~~~t 918 (1085)
..+|+||||+|++||+++|+||||||||||+++|+|... +.+|+|.++|.++.. ..+++.+||++|++.+++ .|
T Consensus 32 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~-~t 108 (271)
T 2ixe_A 32 VQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQ--PTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFG-RS 108 (271)
T ss_dssp SCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEEGGGBCHHHHHHHEEEECSSCCCCS-SB
T ss_pred ceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCCEEEECCEEcccCCHHHHhccEEEEecCCcccc-cc
Confidence 568999999999999999999999999999999999876 568999999987643 234567999999998876 59
Q ss_pred HHHHHHHhhhhcCC-CcccHHHHHHHHHHHHHHc--CCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCC
Q 001400 919 VLESLLFSAWLRLP-SEIELETQRAFVEEVMELV--ELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEP 995 (1085)
Q Consensus 919 v~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEP 995 (1085)
|+||+.|+...... ...........++++++.+ ++....+.. +.+|||||||||+|||||+.+|+|||||||
T Consensus 109 v~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~-----~~~LSgGq~QRv~lAraL~~~p~lllLDEP 183 (271)
T 2ixe_A 109 FRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGET-----GNQLSGGQRQAVALARALIRKPRLLILDNA 183 (271)
T ss_dssp HHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGG-----GTTSCHHHHHHHHHHHHHTTCCSEEEEEST
T ss_pred HHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCC-----cCCCCHHHHHHHHHHHHHhcCCCEEEEECC
Confidence 99999886321100 0000111122345667766 555554443 257999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHH-CCceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCC
Q 001400 996 TSGLDARAAAIVMRTVRNIVN-TGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1085)
Q Consensus 996 tsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~ 1055 (1085)
|+|||+.++..+++.|+++.+ .|+|||++|||++ ....||++++|++ |+++..|+..
T Consensus 184 ts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~--~~~~~d~v~~l~~-G~i~~~g~~~ 241 (271)
T 2ixe_A 184 TSALDAGNQLRVQRLLYESPEWASRTVLLITQQLS--LAERAHHILFLKE-GSVCEQGTHL 241 (271)
T ss_dssp TTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHH--HHTTCSEEEEEET-TEEEEEECHH
T ss_pred ccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHH--HHHhCCEEEEEEC-CEEEEECCHH
Confidence 999999999999999999864 4899999999975 3456999999985 7888888753
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-39 Score=357.23 Aligned_cols=211 Identities=25% Similarity=0.343 Sum_probs=170.9
Q ss_pred eeeeccceeeeeccccccccccccCCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccC
Q 001400 816 SMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPK 895 (1085)
Q Consensus 816 ~~~~~~~~y~v~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 895 (1085)
.+.++|+++.++ ++..+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.++|.++
T Consensus 53 ~i~~~~vs~~y~------------~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~--p~~G~I~i~G~~i 118 (306)
T 3nh6_A 53 RIEFENVHFSYA------------DGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYD--ISSGCIRIDGQDI 118 (306)
T ss_dssp CEEEEEEEEESS------------TTCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSC--CSEEEEEETTEET
T ss_pred eEEEEEEEEEcC------------CCCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCC--CCCcEEEECCEEc
Confidence 466677766542 23579999999999999999999999999999999999876 5699999999987
Q ss_pred Ch---hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCccc-------ccccCCCC
Q 001400 896 RQ---ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLS-------GALIGLPG 965 (1085)
Q Consensus 896 ~~---~~~~~~~gy~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~ 965 (1085)
.. ..+++.+|||+|++.+++ .||+||+.|+.... . .+.++++++.+++.+.. +..++..
T Consensus 119 ~~~~~~~~r~~i~~v~Q~~~lf~-~Tv~eNi~~~~~~~-----~----~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~- 187 (306)
T 3nh6_A 119 SQVTQASLRSHIGVVPQDTVLFN-DTIADNIRYGRVTA-----G----NDEVEAAAQAAGIHDAIMAFPEGYRTQVGER- 187 (306)
T ss_dssp TSBCHHHHHHTEEEECSSCCCCS-EEHHHHHHTTSTTC-----C----HHHHHHHHHHHTCHHHHHHSTTGGGCEESTT-
T ss_pred ccCCHHHHhcceEEEecCCccCc-ccHHHHHHhhcccC-----C----HHHHHHHHHHhCcHHHHHhccchhhhHhcCC-
Confidence 53 346778999999998885 59999999864211 1 12355666666665432 2223322
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEecC
Q 001400 966 INGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 1045 (1085)
Q Consensus 966 ~~~LS~Gqrqrl~iA~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~g 1045 (1085)
+.+|||||||||+|||||+.+|+|||||||||+||+.++..|++.|+++. +++|||+|||+++ ....||++++|++
T Consensus 188 g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~-~~~Tvi~itH~l~--~~~~aD~i~vl~~- 263 (306)
T 3nh6_A 188 GLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVC-ANRTTIVVAHRLS--TVVNADQILVIKD- 263 (306)
T ss_dssp SBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHH-TTSEEEEECCSHH--HHHTCSEEEEEET-
T ss_pred cCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEEcChH--HHHcCCEEEEEEC-
Confidence 35799999999999999999999999999999999999999999999985 5799999999986 3455999999985
Q ss_pred cEEEEecCCC
Q 001400 1046 GELIYAGPLG 1055 (1085)
Q Consensus 1046 G~~~~~g~~~ 1055 (1085)
|++++.|+..
T Consensus 264 G~iv~~G~~~ 273 (306)
T 3nh6_A 264 GCIVERGRHE 273 (306)
T ss_dssp TEEEEEECHH
T ss_pred CEEEEECCHH
Confidence 7999999854
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-39 Score=342.26 Aligned_cols=188 Identities=20% Similarity=0.280 Sum_probs=160.4
Q ss_pred ccCCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCChhcccceEEEEccCCCCCCCC
Q 001400 838 LEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGL 917 (1085)
Q Consensus 838 ~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gy~~Q~~~~~~~~ 917 (1085)
.+++ .+|+||||+|++||+++|+||||||||||+++|+|... +.+|+|.++|.+.. ..++.+||++|++.+++.+
T Consensus 19 ~y~~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~~~--~~~~~i~~v~q~~~~~~~~ 93 (214)
T 1sgw_A 19 GYDK-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK--PLKGEIIYNGVPIT--KVKGKIFFLPEEIIVPRKI 93 (214)
T ss_dssp ESSS-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEEGG--GGGGGEEEECSSCCCCTTS
T ss_pred EeCC-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEhh--hhcCcEEEEeCCCcCCCCC
Confidence 3455 79999999999999999999999999999999999876 56899999998765 3567799999999999999
Q ss_pred CHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCC
Q 001400 918 TVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTS 997 (1085)
Q Consensus 918 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEPts 997 (1085)
||+||+.++...+.. .. . .+.++++++.+++.+. +... .+||||||||++|||||+.+|++|||||||+
T Consensus 94 tv~enl~~~~~~~~~-~~---~-~~~~~~~l~~~gl~~~-~~~~-----~~LSgGqkqrv~laraL~~~p~lllLDEPts 162 (214)
T 1sgw_A 94 SVEDYLKAVASLYGV-KV---N-KNEIMDALESVEVLDL-KKKL-----GELSQGTIRRVQLASTLLVNAEIYVLDDPVV 162 (214)
T ss_dssp BHHHHHHHHHHHTTC-CC---C-HHHHHHHHHHTTCCCT-TSBG-----GGSCHHHHHHHHHHHHTTSCCSEEEEESTTT
T ss_pred CHHHHHHHHHHhcCC-ch---H-HHHHHHHHHHcCCCcC-CCCh-----hhCCHHHHHHHHHHHHHHhCCCEEEEECCCc
Confidence 999999987543221 11 1 3457889999999876 5543 5799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEE
Q 001400 998 GLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFM 1042 (1085)
Q Consensus 998 gLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l 1042 (1085)
|||+.++..+++.|+++.++|+|||++||+++ .+...+|+++++
T Consensus 163 ~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~-~~~~~~d~v~~~ 206 (214)
T 1sgw_A 163 AIDEDSKHKVLKSILEILKEKGIVIISSREEL-SYCDVNENLHKY 206 (214)
T ss_dssp TSCTTTHHHHHHHHHHHHHHHSEEEEEESSCC-TTSSEEEEGGGG
T ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEe
Confidence 99999999999999998766899999999987 466667777654
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-38 Score=348.80 Aligned_cols=205 Identities=26% Similarity=0.387 Sum_probs=172.9
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCCCceEEEEccCC-CCCCCCCH
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQD-WQVAEMTV 226 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~~~~~~yv~Q~d-~~~~~lTV 226 (1085)
+++|+|+|+.|++|++++|+|||||||||||++|+|.++|. +|+|.++|.++.....++.++||+|++ ..++.+||
T Consensus 20 ~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~---~G~I~~~g~~~~~~~~~~~i~~v~q~~~~~~~~~tv 96 (266)
T 2yz2_A 20 KKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPT---SGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAERV 96 (266)
T ss_dssp EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECCHHHHGGGEEEECSSGGGGCCCSSH
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CcEEEECCEECchHHhhhhEEEEeccchhhcCCCcH
Confidence 46999999999999999999999999999999999999876 999999998875322246799999995 46778999
Q ss_pred HHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCc--ccccccccCccc
Q 001400 227 RETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLD--TCADTLVGDEML 304 (1085)
Q Consensus 227 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~--~~~dt~vg~~~~ 304 (1085)
+||+.|+.... ... .....+++++++.+||+ +..+..+
T Consensus 97 ~enl~~~~~~~-~~~----------------------------------~~~~~~~~~~l~~~gl~~~~~~~~~~----- 136 (266)
T 2yz2_A 97 FDEVAFAVKNF-YPD----------------------------------RDPVPLVKKAMEFVGLDFDSFKDRVP----- 136 (266)
T ss_dssp HHHHHHTTTTT-CTT----------------------------------SCSHHHHHHHHHHTTCCHHHHTTCCG-----
T ss_pred HHHHHHHHHhc-CCH----------------------------------HHHHHHHHHHHHHcCcCCcccccCCh-----
Confidence 99999864321 000 01123478899999998 7777655
Q ss_pred ccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEecCC
Q 001400 305 KGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEG 384 (1085)
Q Consensus 305 ~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~~G 384 (1085)
..|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.+. +++|+.++|+..++..+||++++|++|
T Consensus 137 ~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~--g~tii~vtHd~~~~~~~~d~v~~l~~G 214 (266)
T 2yz2_A 137 FFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTL--GKTVILISHDIETVINHVDRVVVLEKG 214 (266)
T ss_dssp GGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT--TCEEEEECSCCTTTGGGCSEEEEEETT
T ss_pred hhCCHHHHHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 469999999999999999999999999999999999999999999998764 445666888888999999999999999
Q ss_pred eEEEecChhhHHH
Q 001400 385 QIVYQGPRVSVLD 397 (1085)
Q Consensus 385 ~iv~~G~~~~~~~ 397 (1085)
++++.|+.+++.+
T Consensus 215 ~i~~~g~~~~~~~ 227 (266)
T 2yz2_A 215 KKVFDGTRMEFLE 227 (266)
T ss_dssp EEEEEEEHHHHHH
T ss_pred EEEEeCCHHHHhc
Confidence 9999999888754
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-38 Score=348.27 Aligned_cols=209 Identities=24% Similarity=0.298 Sum_probs=169.1
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCC--CCC---CCceEEEEccCCCCC-
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFK--EFV---PPRTSAYVSQQDWQV- 221 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~--~~~---~~~~~~yv~Q~d~~~- 221 (1085)
+++|+|||+.|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++. ... .++.++||+|++.++
T Consensus 34 ~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~~~~~~~~~~~~~~~i~~v~Q~~~~~~ 110 (279)
T 2ihy_A 34 KTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPAT---SGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKF 110 (279)
T ss_dssp EEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTBCCC---CCHHHHHTTEEEECHHHHTTS
T ss_pred EEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CeEEEECCEEcccccCCHHHHcCcEEEEEcCccccc
Confidence 46999999999999999999999999999999999999876 999999998875 322 135799999997533
Q ss_pred -CCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCccccccccc
Q 001400 222 -AEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVG 300 (1085)
Q Consensus 222 -~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 300 (1085)
+.+||+||+.|+..... . .+. .+. .+...+++++++.+||++..+..++
T Consensus 111 ~~~ltv~enl~~~~~~~~-~-~~~--------------~~~--------------~~~~~~~~~~l~~~gl~~~~~~~~~ 160 (279)
T 2ihy_A 111 QEGERVIDVVISGAFKSI-G-VYQ--------------DID--------------DEIRNEAHQLLKLVGMSAKAQQYIG 160 (279)
T ss_dssp CTTSBHHHHHHTTC-------------------------CC--------------HHHHHHHHHHHHHTTCGGGTTSBGG
T ss_pred CCCCCHHHHHHhhhhhcc-c-ccc--------------CCc--------------HHHHHHHHHHHHHcCChhHhcCChh
Confidence 35699999988532100 0 000 000 0012347889999999887776654
Q ss_pred CcccccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEE-EEEecChhHHHhhcCeEE
Q 001400 301 DEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTV-ISLLQPAPEAYELFDDVI 379 (1085)
Q Consensus 301 ~~~~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~i-i~~~q~~~~~~~~~D~ii 379 (1085)
.|||||||||+|||||+.+|++|||||||+|||+.++..+++.|+++.+. +.|+. +.++|+..++..+||+|+
T Consensus 161 -----~LSgGqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~-g~tv~~iivtHd~~~~~~~~d~v~ 234 (279)
T 2ihy_A 161 -----YLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDS-YPTLAMIYVTHFIEEITANFSKIL 234 (279)
T ss_dssp -----GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHH-CTTCEEEEEESCGGGCCTTCCEEE
T ss_pred -----hCCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHC-CCEEEEEEEecCHHHHHHhCCEEE
Confidence 69999999999999999999999999999999999999999999998764 55550 557899999999999999
Q ss_pred EecCCeEEEecChhhH
Q 001400 380 LLSEGQIVYQGPRVSV 395 (1085)
Q Consensus 380 ~L~~G~iv~~G~~~~~ 395 (1085)
+|++|++++.|+++++
T Consensus 235 ~l~~G~i~~~g~~~~~ 250 (279)
T 2ihy_A 235 LLKDGQSIQQGAVEDI 250 (279)
T ss_dssp EEETTEEEEEEEHHHH
T ss_pred EEECCEEEEECCHHHH
Confidence 9999999999998776
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-38 Score=341.32 Aligned_cols=200 Identities=26% Similarity=0.396 Sum_probs=162.1
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCC---CceEEEEccCCCCCCCC
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP---PRTSAYVSQQDWQVAEM 224 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 224 (1085)
+.+|+|+|+.|++|++++|+|||||||||||++|+|.++|. +|+|.++|.++..... ++.++||+|++.+++ .
T Consensus 22 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~l~~-~ 97 (247)
T 2ff7_A 22 PVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPE---NGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLN-R 97 (247)
T ss_dssp CEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEETTTSCHHHHHHHEEEECSSCCCTT-S
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEhhhCCHHHHHhcEEEEeCCCcccc-c
Confidence 46999999999999999999999999999999999999876 9999999998865432 357999999998776 6
Q ss_pred CHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccc-------cc
Q 001400 225 TVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCA-------DT 297 (1085)
Q Consensus 225 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~-------dt 297 (1085)
||+||+.|+.. ... ...++.+++.+|+.+.. ++
T Consensus 98 tv~enl~~~~~----~~~------------------------------------~~~~~~~l~~~~l~~~~~~~~~gl~~ 137 (247)
T 2ff7_A 98 SIIDNISLANP----GMS------------------------------------VEKVIYAAKLAGAHDFISELREGYNT 137 (247)
T ss_dssp BHHHHHTTTCT----TCC------------------------------------HHHHHHHHHHHTCHHHHHTSTTGGGC
T ss_pred cHHHHHhccCC----CCC------------------------------------HHHHHHHHHHhChHHHHHhCcchhhh
Confidence 99999987521 000 01134445555554432 34
Q ss_pred cccCcccccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCe
Q 001400 298 LVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDD 377 (1085)
Q Consensus 298 ~vg~~~~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ 377 (1085)
.++ +.+..|||||||||+|||||+.+|++|+|||||+|||+.++..+++.|+++. . +. +|+.++|+...+. .||+
T Consensus 138 ~~~-~~~~~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~-g~-tviivtH~~~~~~-~~d~ 212 (247)
T 2ff7_A 138 IVG-EQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC-K-GR-TVIIIAHRLSTVK-NADR 212 (247)
T ss_dssp BCS-TTTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHH-T-TS-EEEEECSSGGGGT-TSSE
T ss_pred hhh-CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-C-CC-EEEEEeCCHHHHH-hCCE
Confidence 444 3456899999999999999999999999999999999999999999999984 2 44 5555778777664 5999
Q ss_pred EEEecCCeEEEecChhhHH
Q 001400 378 VILLSEGQIVYQGPRVSVL 396 (1085)
Q Consensus 378 ii~L~~G~iv~~G~~~~~~ 396 (1085)
|++|++|++++.|+++++.
T Consensus 213 v~~l~~G~i~~~g~~~~l~ 231 (247)
T 2ff7_A 213 IIVMEKGKIVEQGKHKELL 231 (247)
T ss_dssp EEEEETTEEEEEECHHHHH
T ss_pred EEEEECCEEEEECCHHHHH
Confidence 9999999999999988774
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-38 Score=344.67 Aligned_cols=199 Identities=26% Similarity=0.403 Sum_probs=164.9
Q ss_pred CeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCCh---hcccceEEEEccCCCCCCCC
Q 001400 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFARISGYCEQNDIHSPGL 917 (1085)
Q Consensus 841 ~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gy~~Q~~~~~~~~ 917 (1085)
+..+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.++|.++.. ..+++.+||++|++.+++ .
T Consensus 14 ~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l~~-~ 90 (243)
T 1mv5_A 14 SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQ--PTAGEITIDGQPIDNISLENWRSQIGFVSQDSAIMA-G 90 (243)
T ss_dssp SSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSC--CSBSCEEETTEESTTTSCSCCTTTCCEECCSSCCCC-E
T ss_pred CCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEhhhCCHHHHHhhEEEEcCCCcccc-c
Confidence 4568999999999999999999999999999999999876 468999999987643 235667999999998877 5
Q ss_pred CHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccc-------CCCCCCCCCHHHHHHHHHHHHHhcCCCEE
Q 001400 918 TVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALI-------GLPGINGLSTEQRKRLTIAVELVANPSIV 990 (1085)
Q Consensus 918 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-------~~~~~~~LS~Gqrqrl~iA~aL~~~p~il 990 (1085)
||+||+.|+.. + ... .+.++++++.+++.+..+... +. .+.+||||||||++|||||+.+|+||
T Consensus 91 tv~enl~~~~~---~-~~~----~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~-~~~~LSgGq~qrv~lAral~~~p~ll 161 (243)
T 1mv5_A 91 TIRENLTYGLE---G-DYT----DEDLWQVLDLAFARSFVENMPDQLNTEVGE-RGVKISGGQRQRLAIARAFLRNPKIL 161 (243)
T ss_dssp EHHHHTTSCTT---S-CSC----HHHHHHHHHHHTCTTTTTSSTTGGGCEEST-TSBCCCHHHHHHHHHHHHHHHCCSEE
T ss_pred cHHHHHhhhcc---C-CCC----HHHHHHHHHHhChHHHHHhCccchhchhcc-CcCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 99999987521 1 111 134678888888877655431 11 23579999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCC
Q 001400 991 FMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1085)
Q Consensus 991 llDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~ 1055 (1085)
+|||||+|||+.++..+++.|+++. +|+|||++||+++ ..+.||++++|++ |++++.|+..
T Consensus 162 lLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~--~~~~~d~v~~l~~-G~i~~~g~~~ 222 (243)
T 1mv5_A 162 MLDEATASLDSESESMVQKALDSLM-KGRTTLVIAHRLS--TIVDADKIYFIEK-GQITGSGKHN 222 (243)
T ss_dssp EEECCSCSSCSSSCCHHHHHHHHHH-TTSEEEEECCSHH--HHHHCSEEEEEET-TEECCCSCHH
T ss_pred EEECCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCChH--HHHhCCEEEEEEC-CEEEEeCCHH
Confidence 9999999999999999999999987 6999999999975 3356999999985 7888877653
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-38 Score=345.60 Aligned_cols=209 Identities=22% Similarity=0.347 Sum_probs=165.5
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCC---CceEEEEccCCCCCCCC
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP---PRTSAYVSQQDWQVAEM 224 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 224 (1085)
+++|+|||+.|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++||+|++.+++ .
T Consensus 32 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~-~ 107 (271)
T 2ixe_A 32 VQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPT---GGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFG-R 107 (271)
T ss_dssp SCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEEGGGBCHHHHHHHEEEECSSCCCCS-S
T ss_pred ceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CCEEEECCEEcccCCHHHHhccEEEEecCCcccc-c
Confidence 46999999999999999999999999999999999999876 9999999988754322 356999999998776 5
Q ss_pred CHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHh--CCcccccccccCc
Q 001400 225 TVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKIL--GLDTCADTLVGDE 302 (1085)
Q Consensus 225 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~l--gL~~~~dt~vg~~ 302 (1085)
||+|||.|+.... . ..+...+.. . ...++.+++.+ ||+...+.
T Consensus 108 tv~enl~~~~~~~--~-~~~~~~~~~---~------------------------~~~~~~~l~~l~~gl~~~~~~----- 152 (271)
T 2ixe_A 108 SFRENIAYGLTRT--P-TMEEITAVA---M------------------------ESGAHDFISGFPQGYDTEVGE----- 152 (271)
T ss_dssp BHHHHHHTTCSSC--C-CHHHHHHHH---H------------------------HHTCHHHHHHSTTGGGSBCCG-----
T ss_pred cHHHHHhhhcccC--C-hHHHHHHHH---H------------------------HHhHHHHHHhhhcchhhhhcC-----
Confidence 9999999864211 0 000000000 0 11245567777 66655443
Q ss_pred ccccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEec
Q 001400 303 MLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLS 382 (1085)
Q Consensus 303 ~~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~ 382 (1085)
.+..|||||||||+|||||+.+|++|+|||||+|||+.++..+++.|+++.+.. +++|+.++|+...+. .||+|++|+
T Consensus 153 ~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~-g~tviivtHd~~~~~-~~d~v~~l~ 230 (271)
T 2ixe_A 153 TGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWA-SRTVLLITQQLSLAE-RAHHILFLK 230 (271)
T ss_dssp GGTTSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTT-TSEEEEECSCHHHHT-TCSEEEEEE
T ss_pred CcCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhc-CCEEEEEeCCHHHHH-hCCEEEEEE
Confidence 345799999999999999999999999999999999999999999999875433 445666788887775 599999999
Q ss_pred CCeEEEecChhhHHH
Q 001400 383 EGQIVYQGPRVSVLD 397 (1085)
Q Consensus 383 ~G~iv~~G~~~~~~~ 397 (1085)
+|++++.|+++++..
T Consensus 231 ~G~i~~~g~~~~l~~ 245 (271)
T 2ixe_A 231 EGSVCEQGTHLQLME 245 (271)
T ss_dssp TTEEEEEECHHHHHH
T ss_pred CCEEEEECCHHHHHh
Confidence 999999999988753
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-38 Score=341.54 Aligned_cols=205 Identities=22% Similarity=0.259 Sum_probs=163.0
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhh--hCCCCceeeEEEECCccCCCCCC----CceEEEEccCCCCC
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGR--LGHHLQVSGKITYNGHGFKEFVP----PRTSAYVSQQDWQV 221 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~--l~~~~~~~G~i~~~G~~~~~~~~----~~~~~yv~Q~d~~~ 221 (1085)
.++|+|+|+.|++|++++|+|||||||||||++|+|. ++| .+|+|.++|.++..... ++.++||+|++.++
T Consensus 16 ~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p---~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~ 92 (250)
T 2d2e_A 16 ETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTV---ERGEILLDGENILELSPDERARKGLFLAFQYPVEV 92 (250)
T ss_dssp EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEE---EEEEEEETTEECTTSCHHHHHHTTBCCCCCCCC-C
T ss_pred EEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---CceEEEECCEECCCCCHHHHHhCcEEEeccCCccc
Confidence 4699999999999999999999999999999999997 444 49999999998765432 23489999999999
Q ss_pred CCCCHHHHHHHhhhh-cCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCC-cccccccc
Q 001400 222 AEMTVRETLDFAGQC-QGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGL-DTCADTLV 299 (1085)
Q Consensus 222 ~~lTV~E~l~f~~~~-~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL-~~~~dt~v 299 (1085)
+.+||+||+.++... .+.. ... .+...+++++++.+|| .+..++.+
T Consensus 93 ~~~tv~e~l~~~~~~~~~~~-------------------~~~-------------~~~~~~~~~~l~~~gl~~~~~~~~~ 140 (250)
T 2d2e_A 93 PGVTIANFLRLALQAKLGRE-------------------VGV-------------AEFWTKVKKALELLDWDESYLSRYL 140 (250)
T ss_dssp CSCBHHHHHHHHHHHHHTSC-------------------CCH-------------HHHHHHHHHHHHHHTCCGGGGGSBT
T ss_pred cCCCHHHHHHHHHHhhcccc-------------------CCH-------------HHHHHHHHHHHHHcCCChhHhcCCc
Confidence 999999999886421 1100 000 0012247788999999 46676655
Q ss_pred cCccccc-CchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhh-cCe
Q 001400 300 GDEMLKG-ISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYEL-FDD 377 (1085)
Q Consensus 300 g~~~~~~-LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~-~D~ 377 (1085)
+ . |||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.+ . +++|+.++|+..++..+ +|+
T Consensus 141 ~-----~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~-~-g~tvi~vtHd~~~~~~~~~d~ 213 (250)
T 2d2e_A 141 N-----EGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRG-P-NFGALVITHYQRILNYIQPDK 213 (250)
T ss_dssp T-----CC----HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCS-T-TCEEEEECSSSGGGGTSCCSE
T ss_pred c-----cCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-c-CCEEEEEecCHHHHHHhcCCE
Confidence 3 5 999999999999999999999999999999999999999999998854 2 45566678888888888 599
Q ss_pred EEEecCCeEEEecChhh
Q 001400 378 VILLSEGQIVYQGPRVS 394 (1085)
Q Consensus 378 ii~L~~G~iv~~G~~~~ 394 (1085)
|++|++|++++.|+++.
T Consensus 214 v~~l~~G~i~~~g~~~~ 230 (250)
T 2d2e_A 214 VHVMMDGRVVATGGPEL 230 (250)
T ss_dssp EEEEETTEEEEEESHHH
T ss_pred EEEEECCEEEEEeCHHH
Confidence 99999999999999873
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-37 Score=340.58 Aligned_cols=196 Identities=26% Similarity=0.383 Sum_probs=159.8
Q ss_pred eEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCCh---hcccceEEEEccCCCCCCCCC
Q 001400 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFARISGYCEQNDIHSPGLT 918 (1085)
Q Consensus 842 ~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gy~~Q~~~~~~~~t 918 (1085)
..+|+||||+|++||++||+||||||||||+++|+|... + +|+|.++|.++.. ..+++.+||++|++.+++ .|
T Consensus 33 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~-~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~l~~-~t 108 (260)
T 2ghi_A 33 HRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYD--A-EGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFN-ET 108 (260)
T ss_dssp SCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--C-EEEEEETTEEGGGBCHHHHHTTEEEECSSCCCCS-EE
T ss_pred CceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCC--C-CeEEEECCEEhhhcCHHHHhccEEEEcCCCcccc-cC
Confidence 358999999999999999999999999999999999875 3 7999999987642 335677999999998876 59
Q ss_pred HHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccc-------cccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEE
Q 001400 919 VLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSG-------ALIGLPGINGLSTEQRKRLTIAVELVANPSIVF 991 (1085)
Q Consensus 919 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~ill 991 (1085)
|+||+.|+.. . .. .+.+.++++.+++.+..+ ...+. .+.+|||||||||+|||||+.+|+|||
T Consensus 109 v~enl~~~~~---~--~~----~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~-~~~~LSgGqkqRv~lAraL~~~p~lll 178 (260)
T 2ghi_A 109 IKYNILYGKL---D--AT----DEEVIKATKSAQLYDFIEALPKKWDTIVGN-KGMKLSGGERQRIAIARCLLKDPKIVI 178 (260)
T ss_dssp HHHHHHTTCT---T--CC----HHHHHHHHHHTTCHHHHHTSTTGGGCEESS-SSBCCCHHHHHHHHHHHHHHHCCSEEE
T ss_pred HHHHHhccCC---C--CC----HHHHHHHHHHhCCHHHHHhccccccccccC-CcCcCCHHHHHHHHHHHHHHcCCCEEE
Confidence 9999987521 1 11 123556777777654322 11221 235799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCC
Q 001400 992 MDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1085)
Q Consensus 992 lDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~ 1055 (1085)
|||||+|||+.++..+++.|+++. +|+|||++||+++. + +.||++++|++ |+++..|+..
T Consensus 179 LDEPts~LD~~~~~~i~~~l~~l~-~~~tviivtH~~~~-~-~~~d~i~~l~~-G~i~~~g~~~ 238 (260)
T 2ghi_A 179 FDEATSSLDSKTEYLFQKAVEDLR-KNRTLIIIAHRLST-I-SSAESIILLNK-GKIVEKGTHK 238 (260)
T ss_dssp EECCCCTTCHHHHHHHHHHHHHHT-TTSEEEEECSSGGG-S-TTCSEEEEEET-TEEEEEECHH
T ss_pred EECccccCCHHHHHHHHHHHHHhc-CCCEEEEEcCCHHH-H-HhCCEEEEEEC-CEEEEECCHH
Confidence 999999999999999999999985 48999999999863 3 56999999985 7899888753
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-37 Score=338.75 Aligned_cols=202 Identities=23% Similarity=0.314 Sum_probs=165.5
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCC---CCceEEEEccCCCCCCCC
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV---PPRTSAYVSQQDWQVAEM 224 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~---~~~~~~yv~Q~d~~~~~l 224 (1085)
.++|+|+|+.|++|++++|+|||||||||||++|+|.++|. +|+|.++|.++.... .++.++||+|++.+++ .
T Consensus 15 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l~~-~ 90 (243)
T 1mv5_A 15 EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPT---AGEITIDGQPIDNISLENWRSQIGFVSQDSAIMA-G 90 (243)
T ss_dssp SCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCS---BSCEEETTEESTTTSCSCCTTTCCEECCSSCCCC-E
T ss_pred CceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEhhhCCHHHHHhhEEEEcCCCcccc-c
Confidence 46999999999999999999999999999999999999876 999999999875432 3467999999998776 5
Q ss_pred CHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccc-------
Q 001400 225 TVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADT------- 297 (1085)
Q Consensus 225 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt------- 297 (1085)
||+||+.|+... ... ...++++++.+|+.+..+.
T Consensus 91 tv~enl~~~~~~---~~~------------------------------------~~~~~~~l~~~~l~~~~~~~~~gl~~ 131 (243)
T 1mv5_A 91 TIRENLTYGLEG---DYT------------------------------------DEDLWQVLDLAFARSFVENMPDQLNT 131 (243)
T ss_dssp EHHHHTTSCTTS---CSC------------------------------------HHHHHHHHHHHTCTTTTTSSTTGGGC
T ss_pred cHHHHHhhhccC---CCC------------------------------------HHHHHHHHHHhChHHHHHhCccchhc
Confidence 999999875210 000 1125566777787665443
Q ss_pred cccCcccccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCe
Q 001400 298 LVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDD 377 (1085)
Q Consensus 298 ~vg~~~~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ 377 (1085)
.++ +.+..|||||||||+|||||+.+|++|+|||||+|||+.++..+++.|+++. . + ++|+.++|+...+ ..||+
T Consensus 132 ~~~-~~~~~LSgGq~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~-~-~tvi~vtH~~~~~-~~~d~ 206 (243)
T 1mv5_A 132 EVG-ERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM-K-G-RTTLVIAHRLSTI-VDADK 206 (243)
T ss_dssp EES-TTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH-T-T-SEEEEECCSHHHH-HHCSE
T ss_pred hhc-cCcCcCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhc-C-C-CEEEEEeCChHHH-HhCCE
Confidence 333 3456899999999999999999999999999999999999999999999885 2 4 4555577877766 46999
Q ss_pred EEEecCCeEEEecChhhHHH
Q 001400 378 VILLSEGQIVYQGPRVSVLD 397 (1085)
Q Consensus 378 ii~L~~G~iv~~G~~~~~~~ 397 (1085)
|++|++|++++.|+++++..
T Consensus 207 v~~l~~G~i~~~g~~~~~~~ 226 (243)
T 1mv5_A 207 IYFIEKGQITGSGKHNELVA 226 (243)
T ss_dssp EEEEETTEECCCSCHHHHHH
T ss_pred EEEEECCEEEEeCCHHHHHh
Confidence 99999999999999887753
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-37 Score=336.54 Aligned_cols=197 Identities=24% Similarity=0.352 Sum_probs=169.2
Q ss_pred eecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCC---CceEEEEccCCCCCCCCC
Q 001400 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP---PRTSAYVSQQDWQVAEMT 225 (1085)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~lT 225 (1085)
++|+|+|+.|++|++++|+|||||||||||++|+|.++| . |+|.++|.++..... ++.++|++|++.+++.+|
T Consensus 14 ~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p---~-G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~t 89 (249)
T 2qi9_C 14 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG---K-GSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATP 89 (249)
T ss_dssp TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCC---E-EEEEETTEEGGGSCHHHHHHHEEEECSCCCCCTTCB
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC---C-eEEEECCEECCcCCHHHHhceEEEECCCCccCCCCc
Confidence 489999999999999999999999999999999999865 4 999999988754321 356999999998889999
Q ss_pred HHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCcccc
Q 001400 226 VRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLK 305 (1085)
Q Consensus 226 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 305 (1085)
|+||+.|+.. .. . . ...++++++.+||++..+..+ .
T Consensus 90 v~e~l~~~~~-~~--~--~----------------------------------~~~~~~~l~~~~l~~~~~~~~-----~ 125 (249)
T 2qi9_C 90 VWHYLTLHQH-DK--T--R----------------------------------TELLNDVAGALALDDKLGRST-----N 125 (249)
T ss_dssp HHHHHHTTCS-ST--T--C----------------------------------HHHHHHHHHHTTCGGGTTSBG-----G
T ss_pred HHHHHHHhhc-cC--C--c----------------------------------HHHHHHHHHHcCChhHhcCCh-----h
Confidence 9999987521 00 0 0 123678899999988777654 4
Q ss_pred cCchhhhhHHHHHHHHhCCCc-------EeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeE
Q 001400 306 GISGGQKKRLTTGELLVGPAR-------VLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDV 378 (1085)
Q Consensus 306 ~LSGGqkqRvsia~al~~~p~-------vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i 378 (1085)
.|||||||||+|||||+.+|+ +|+|||||+|||+.++..+.+.|+++++. +++|+.++|+..++..++|++
T Consensus 126 ~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~--g~tviivtHd~~~~~~~~d~v 203 (249)
T 2qi9_C 126 QLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQ--GLAIVMSSHDLNHTLRHAHRA 203 (249)
T ss_dssp GCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHCSEE
T ss_pred hCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhC--CCEEEEEeCCHHHHHHhCCEE
Confidence 699999999999999999999 99999999999999999999999998754 445666889999999999999
Q ss_pred EEecCCeEEEecChhhH
Q 001400 379 ILLSEGQIVYQGPRVSV 395 (1085)
Q Consensus 379 i~L~~G~iv~~G~~~~~ 395 (1085)
++|++|++++.|+++++
T Consensus 204 ~~l~~G~i~~~g~~~~~ 220 (249)
T 2qi9_C 204 WLLKGGKMLASGRREEV 220 (249)
T ss_dssp EEEETTEEEEEEEHHHH
T ss_pred EEEECCEEEEeCCHHHH
Confidence 99999999999998776
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-37 Score=336.59 Aligned_cols=200 Identities=23% Similarity=0.319 Sum_probs=161.1
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCC---CCceEEEEccCCCCCCCC
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV---PPRTSAYVSQQDWQVAEM 224 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~---~~~~~~yv~Q~d~~~~~l 224 (1085)
+++|+|+|+.|++|++++|+|||||||||||++|+|.+++ +|+|.++|.++.... .++.++||+|++.+++ .
T Consensus 33 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~----~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~l~~-~ 107 (260)
T 2ghi_A 33 HRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA----EGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFN-E 107 (260)
T ss_dssp SCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC----EEEEEETTEEGGGBCHHHHHTTEEEECSSCCCCS-E
T ss_pred CceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC----CeEEEECCEEhhhcCHHHHhccEEEEcCCCcccc-c
Confidence 4699999999999999999999999999999999998753 799999998875432 2357999999998776 6
Q ss_pred CHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHh-------CCcccccc
Q 001400 225 TVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKIL-------GLDTCADT 297 (1085)
Q Consensus 225 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~l-------gL~~~~dt 297 (1085)
||+||+.|+.. ....+ .+.++++.+ ++++..||
T Consensus 108 tv~enl~~~~~----~~~~~------------------------------------~~~~~l~~~~l~~~~~~l~~~~~~ 147 (260)
T 2ghi_A 108 TIKYNILYGKL----DATDE------------------------------------EVIKATKSAQLYDFIEALPKKWDT 147 (260)
T ss_dssp EHHHHHHTTCT----TCCHH------------------------------------HHHHHHHHTTCHHHHHTSTTGGGC
T ss_pred CHHHHHhccCC----CCCHH------------------------------------HHHHHHHHhCCHHHHHhccccccc
Confidence 99999988521 00000 122233333 34555677
Q ss_pred cccCcccccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCe
Q 001400 298 LVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDD 377 (1085)
Q Consensus 298 ~vg~~~~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ 377 (1085)
.++. .+..|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.+ +. +|+.++|+...+ ..||+
T Consensus 148 ~~~~-~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~--~~-tviivtH~~~~~-~~~d~ 222 (260)
T 2ghi_A 148 IVGN-KGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRK--NR-TLIIIAHRLSTI-SSAES 222 (260)
T ss_dssp EESS-SSBCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTT--TS-EEEEECSSGGGS-TTCSE
T ss_pred cccC-CcCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhcC--CC-EEEEEcCCHHHH-HhCCE
Confidence 6654 4678999999999999999999999999999999999999999999998853 44 555577777766 46999
Q ss_pred EEEecCCeEEEecChhhHHH
Q 001400 378 VILLSEGQIVYQGPRVSVLD 397 (1085)
Q Consensus 378 ii~L~~G~iv~~G~~~~~~~ 397 (1085)
|++|++|++++.|+++++..
T Consensus 223 i~~l~~G~i~~~g~~~~l~~ 242 (260)
T 2ghi_A 223 IILLNKGKIVEKGTHKDLLK 242 (260)
T ss_dssp EEEEETTEEEEEECHHHHHH
T ss_pred EEEEECCEEEEECCHHHHHh
Confidence 99999999999999988753
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-36 Score=331.87 Aligned_cols=197 Identities=18% Similarity=0.236 Sum_probs=165.6
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCCCceEEEEccCCCCCCCCCHH
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVR 227 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 227 (1085)
.++|+|+|+.|++|++++|+|||||||||||++|+|.++|+ +|+|.+ ++.++||+|++.+++.+||+
T Consensus 18 ~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~I~~----------~~~i~~v~q~~~~~~~~tv~ 84 (253)
T 2nq2_C 18 NFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPI---QGKIEV----------YQSIGFVPQFFSSPFAYSVL 84 (253)
T ss_dssp TEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCS---EEEEEE----------CSCEEEECSCCCCSSCCBHH
T ss_pred CeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEE----------eccEEEEcCCCccCCCCCHH
Confidence 36999999999999999999999999999999999999876 999983 34799999999888899999
Q ss_pred HHHHHhhhhc-CCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCccccc
Q 001400 228 ETLDFAGQCQ-GVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKG 306 (1085)
Q Consensus 228 E~l~f~~~~~-~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 306 (1085)
||+.|+.... +.... +. .....+++++++.+||.+..+..+ .+
T Consensus 85 enl~~~~~~~~~~~~~-----------------~~--------------~~~~~~~~~~l~~~~l~~~~~~~~-----~~ 128 (253)
T 2nq2_C 85 DIVLMGRSTHINTFAK-----------------PK--------------SHDYQVAMQALDYLNLTHLAKREF-----TS 128 (253)
T ss_dssp HHHHGGGGGGSCTTCC-----------------CC--------------HHHHHHHHHHHHHTTCGGGTTSBG-----GG
T ss_pred HHHHHhhhhhcccccC-----------------CC--------------HHHHHHHHHHHHHcCChHHhcCCh-----hh
Confidence 9999864321 10000 00 001224788999999998777654 46
Q ss_pred CchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEecCCeE
Q 001400 307 ISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQI 386 (1085)
Q Consensus 307 LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~~G~i 386 (1085)
|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.+.. +++|+.++|+..++..+||++++|++|+
T Consensus 129 LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~-g~tvi~vtHd~~~~~~~~d~v~~l~~G~- 206 (253)
T 2nq2_C 129 LSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQ-NMTVVFTTHQPNQVVAIANKTLLLNKQN- 206 (253)
T ss_dssp SCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTS-CCEEEEEESCHHHHHHHCSEEEEEETTE-
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEecCHHHHHHhCCEEEEEeCCe-
Confidence 99999999999999999999999999999999999999999999987643 4456668899999999999999999999
Q ss_pred EEecChhhH
Q 001400 387 VYQGPRVSV 395 (1085)
Q Consensus 387 v~~G~~~~~ 395 (1085)
++.|+++++
T Consensus 207 ~~~g~~~~~ 215 (253)
T 2nq2_C 207 FKFGETRNI 215 (253)
T ss_dssp EEEEEHHHH
T ss_pred EecCCHHHH
Confidence 999998776
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-37 Score=335.81 Aligned_cols=223 Identities=22% Similarity=0.242 Sum_probs=172.1
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCC----CceEEEEccCCCCCCC
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP----PRTSAYVSQQDWQVAE 223 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 223 (1085)
+++|+|+|+.|++|++++|+|||||||||||++|+|.+.. .+.+|+|.++|.++..... ++.++||+|++.+++.
T Consensus 33 ~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~-~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~Q~~~l~~~ 111 (267)
T 2zu0_C 33 KAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDY-EVTGGTVEFKGKDLLALSPEDRAGEGIFMAFQYPVEIPG 111 (267)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTC-EEEEEEEEETTEEGGGSCHHHHHHHTEEEECSSCCCCTT
T ss_pred EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCCCeEEEECCEECCcCCHHHHhhCCEEEEccCcccccc
Confidence 4699999999999999999999999999999999998421 1349999999988754332 2348999999999999
Q ss_pred CCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCc-ccccccccCc
Q 001400 224 MTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLD-TCADTLVGDE 302 (1085)
Q Consensus 224 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~vg~~ 302 (1085)
+||+|++.+..... . ...+...... .+...+++++++.+||+ ...+..++
T Consensus 112 ~tv~e~~~~~~~~~------------~---~~~~~~~~~~------------~~~~~~~~~~l~~~gl~~~~~~~~~~-- 162 (267)
T 2zu0_C 112 VSNQFFLQTALNAV------------R---SYRGQETLDR------------FDFQDLMEEKIALLKMPEDLLTRSVN-- 162 (267)
T ss_dssp CBHHHHHHHHHHHH------------H---HGGGCCCCCH------------HHHHHHHHHHHHHTTCCTTTTTSBTT--
T ss_pred ccHHHHHHHHHHhh------------h---hhhccccCCH------------HHHHHHHHHHHHHcCCChhHhcCCcc--
Confidence 99999998753100 0 0000000000 00123478899999996 45555443
Q ss_pred ccccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhh-cCeEEEe
Q 001400 303 MLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYEL-FDDVILL 381 (1085)
Q Consensus 303 ~~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~-~D~ii~L 381 (1085)
.+|||||||||+|||||+.+|++|+|||||+|||+.++..+++.|+++++ . +++|+.++|+..++..+ +|+|++|
T Consensus 163 --~~LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~-~-g~tviivtHd~~~~~~~~~d~v~~l 238 (267)
T 2zu0_C 163 --VGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRD-G-KRSFIIVTHYQRILDYIKPDYVHVL 238 (267)
T ss_dssp --TTCCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCC-S-SCEEEEECSSGGGGGTSCCSEEEEE
T ss_pred --cCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-c-CCEEEEEeeCHHHHHhhcCCEEEEE
Confidence 14999999999999999999999999999999999999999999998753 2 45566688888888776 8999999
Q ss_pred cCCeEEEecChhhHHHHHHhCCCC
Q 001400 382 SEGQIVYQGPRVSVLDFFASMGFS 405 (1085)
Q Consensus 382 ~~G~iv~~G~~~~~~~~f~~~G~~ 405 (1085)
++|++++.|+++++.. ++..||.
T Consensus 239 ~~G~i~~~g~~~~~~~-~~~~~~~ 261 (267)
T 2zu0_C 239 YQGRIVKSGDFTLVKQ-LEEQGYG 261 (267)
T ss_dssp ETTEEEEEECTTHHHH-HHTTTCT
T ss_pred ECCEEEEEcCHHHHhh-hhhcchh
Confidence 9999999999987753 4444443
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-37 Score=337.43 Aligned_cols=190 Identities=21% Similarity=0.254 Sum_probs=161.4
Q ss_pred eEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCChhcccceEE-EEccCCCCCCCCCHH
Q 001400 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISG-YCEQNDIHSPGLTVL 920 (1085)
Q Consensus 842 ~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~g-y~~Q~~~~~~~~tv~ 920 (1085)
..+|+|+||+|+ ||+++|+||||||||||+++|+|.. + .+|+|.++|.+......++.+| |++|++.+ .+||+
T Consensus 18 ~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p--~~G~I~~~g~~~~~~~~~~~i~~~v~Q~~~l--~~tv~ 91 (263)
T 2pjz_A 18 RFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-P--YSGNIFINGMEVRKIRNYIRYSTNLPEAYEI--GVTVN 91 (263)
T ss_dssp EEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-C--CEEEEEETTEEGGGCSCCTTEEECCGGGSCT--TSBHH
T ss_pred ceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-C--CCcEEEECCEECcchHHhhheEEEeCCCCcc--CCcHH
Confidence 579999999999 9999999999999999999999986 4 5899999998754211256799 99999877 88999
Q ss_pred HHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCC-cccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCC
Q 001400 921 ESLLFSAWLRLPSEIELETQRAFVEEVMELVELT-SLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGL 999 (1085)
Q Consensus 921 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEPtsgL 999 (1085)
||+.+....+ .. ..+.++++++.+++. +..+... .+||||||||++|||||+.+|++|||||||+||
T Consensus 92 enl~~~~~~~---~~----~~~~~~~~l~~~gl~~~~~~~~~-----~~LSgGqkqRv~lAraL~~~p~lllLDEPts~L 159 (263)
T 2pjz_A 92 DIVYLYEELK---GL----DRDLFLEMLKALKLGEEILRRKL-----YKLSAGQSVLVRTSLALASQPEIVGLDEPFENV 159 (263)
T ss_dssp HHHHHHHHHT---CC----CHHHHHHHHHHTTCCGGGGGSBG-----GGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTC
T ss_pred HHHHHhhhhc---ch----HHHHHHHHHHHcCCChhHhcCCh-----hhCCHHHHHHHHHHHHHHhCCCEEEEECCcccc
Confidence 9998865432 11 124578899999998 7766553 479999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcC-EEEEEecCcEEEEecCC
Q 001400 1000 DARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFD-ELLFMKRGGELIYAGPL 1054 (1085)
Q Consensus 1000 D~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d-~il~l~~gG~~~~~g~~ 1054 (1085)
|+.++..+++.|+++.+ |||++|||++ .+...|| ++++|++ |++++.|+.
T Consensus 160 D~~~~~~l~~~L~~~~~---tviivtHd~~-~~~~~~d~~i~~l~~-G~i~~~g~~ 210 (263)
T 2pjz_A 160 DAARRHVISRYIKEYGK---EGILVTHELD-MLNLYKEYKAYFLVG-NRLQGPISV 210 (263)
T ss_dssp CHHHHHHHHHHHHHSCS---EEEEEESCGG-GGGGCTTSEEEEEET-TEEEEEEEH
T ss_pred CHHHHHHHHHHHHHhcC---cEEEEEcCHH-HHHHhcCceEEEEEC-CEEEEecCH
Confidence 99999999999998742 9999999986 3667899 9999985 788888864
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-36 Score=333.24 Aligned_cols=194 Identities=20% Similarity=0.200 Sum_probs=165.9
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCCCceEE-EEccCCCCCCCCCH
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSA-YVSQQDWQVAEMTV 226 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~~~~~~-yv~Q~d~~~~~lTV 226 (1085)
+.+|+|+|+.++ |++++|+|||||||||||++|+|.+ |+ +|+|.++|.++.....++.++ |++|++.+ .+||
T Consensus 18 ~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~---~G~I~~~g~~~~~~~~~~~i~~~v~Q~~~l--~~tv 90 (263)
T 2pjz_A 18 RFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PY---SGNIFINGMEVRKIRNYIRYSTNLPEAYEI--GVTV 90 (263)
T ss_dssp EEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CC---EEEEEETTEEGGGCSCCTTEEECCGGGSCT--TSBH
T ss_pred ceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CC---CcEEEECCEECcchHHhhheEEEeCCCCcc--CCcH
Confidence 469999999999 9999999999999999999999999 86 999999998764321256799 99999875 8999
Q ss_pred HHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCc-ccccccccCcccc
Q 001400 227 RETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLD-TCADTLVGDEMLK 305 (1085)
Q Consensus 227 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~vg~~~~~ 305 (1085)
+||+.|+..... ....+++++++.+||. +..+..+ .
T Consensus 91 ~enl~~~~~~~~--------------------------------------~~~~~~~~~l~~~gl~~~~~~~~~-----~ 127 (263)
T 2pjz_A 91 NDIVYLYEELKG--------------------------------------LDRDLFLEMLKALKLGEEILRRKL-----Y 127 (263)
T ss_dssp HHHHHHHHHHTC--------------------------------------CCHHHHHHHHHHTTCCGGGGGSBG-----G
T ss_pred HHHHHHhhhhcc--------------------------------------hHHHHHHHHHHHcCCChhHhcCCh-----h
Confidence 999988543210 0012377889999998 7766554 4
Q ss_pred cCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcC-eEEEecCC
Q 001400 306 GISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFD-DVILLSEG 384 (1085)
Q Consensus 306 ~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D-~ii~L~~G 384 (1085)
.|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++. . +|+.++|+..++..+|| ++++|++|
T Consensus 128 ~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~----~-tviivtHd~~~~~~~~d~~i~~l~~G 202 (263)
T 2pjz_A 128 KLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYG----K-EGILVTHELDMLNLYKEYKAYFLVGN 202 (263)
T ss_dssp GSCHHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSC----S-EEEEEESCGGGGGGCTTSEEEEEETT
T ss_pred hCCHHHHHHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhc----C-cEEEEEcCHHHHHHhcCceEEEEECC
Confidence 699999999999999999999999999999999999999999998753 2 56668899899999999 99999999
Q ss_pred eEEEecChhhHH
Q 001400 385 QIVYQGPRVSVL 396 (1085)
Q Consensus 385 ~iv~~G~~~~~~ 396 (1085)
++++.|+++++.
T Consensus 203 ~i~~~g~~~~l~ 214 (263)
T 2pjz_A 203 RLQGPISVSELL 214 (263)
T ss_dssp EEEEEEEHHHHH
T ss_pred EEEEecCHHHHH
Confidence 999999988774
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-37 Score=354.45 Aligned_cols=200 Identities=24% Similarity=0.293 Sum_probs=163.7
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCC---CceEEEEccCCCCCCCC
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP---PRTSAYVSQQDWQVAEM 224 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 224 (1085)
..+|+|||++|++||+++|+|||||||||||++|+|+++ . +|+|.++|+++....+ ++.++||+|++.+|+ +
T Consensus 34 ~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~---~G~I~i~G~~i~~~~~~~~rr~ig~v~Q~~~lf~-~ 108 (390)
T 3gd7_A 34 NAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-T---EGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFS-G 108 (390)
T ss_dssp CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-E---EEEEEESSCBTTSSCHHHHHHTEEEESCCCCCCS-E
T ss_pred eEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-C---CeEEEECCEECCcCChHHHhCCEEEEcCCcccCc-c
Confidence 469999999999999999999999999999999999875 3 8999999999876543 368999999998887 6
Q ss_pred CHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccC---
Q 001400 225 TVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGD--- 301 (1085)
Q Consensus 225 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~--- 301 (1085)
||+||+.+... . ...+++++++.+||.+..+.....
T Consensus 109 tv~enl~~~~~-----~------------------------------------~~~~v~~~l~~~~L~~~~~~~p~~l~~ 147 (390)
T 3gd7_A 109 TFRKNLDPNAA-----H------------------------------------SDQEIWKVADEVGLRSVIEQFPGKLDF 147 (390)
T ss_dssp EHHHHHCTTCC-----S------------------------------------CHHHHHHHHHHTTCHHHHTTSTTGGGC
T ss_pred CHHHHhhhccc-----c------------------------------------CHHHHHHHHHHhCCHHHHhhccccccc
Confidence 99999964211 0 011356677888887655544321
Q ss_pred ---cccccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeE
Q 001400 302 ---EMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDV 378 (1085)
Q Consensus 302 ---~~~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i 378 (1085)
+...+|||||||||+|||||+.+|++|||||||||||+.++.++.+.|+++. .+++++.++|+. +....+|+|
T Consensus 148 ~i~~~g~~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~---~~~tvi~vtHd~-e~~~~aDri 223 (390)
T 3gd7_A 148 VLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAF---ADCTVILCEARI-EAMLECDQF 223 (390)
T ss_dssp EECTTTTTSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTT---TTSCEEEECSSS-GGGTTCSEE
T ss_pred ccccccccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh---CCCEEEEEEcCH-HHHHhCCEE
Confidence 2234599999999999999999999999999999999999999999998753 234555677775 456779999
Q ss_pred EEecCCeEEEecChhhHHH
Q 001400 379 ILLSEGQIVYQGPRVSVLD 397 (1085)
Q Consensus 379 i~L~~G~iv~~G~~~~~~~ 397 (1085)
++|++|+++..|+++++..
T Consensus 224 ~vl~~G~i~~~g~~~el~~ 242 (390)
T 3gd7_A 224 LVIEENKVRQYDSILELYH 242 (390)
T ss_dssp EEEETTEEEEESSHHHHHH
T ss_pred EEEECCEEEEECCHHHHHh
Confidence 9999999999999998854
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-36 Score=324.02 Aligned_cols=196 Identities=22% Similarity=0.316 Sum_probs=151.3
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCCCceEEEEccCCCCCCCCCHH
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVR 227 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 227 (1085)
+++|+|+|++|++|++++|+|||||||||||++|+|.++|. +|+|.++| .++|++|++.+++. ||+
T Consensus 21 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g----------~i~~v~q~~~~~~~-tv~ 86 (229)
T 2pze_A 21 TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS---EGKIKHSG----------RISFCSQFSWIMPG-TIK 86 (229)
T ss_dssp CCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEECS----------CEEEECSSCCCCSB-CHH
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCC---ccEEEECC----------EEEEEecCCcccCC-CHH
Confidence 46999999999999999999999999999999999999876 99999998 48999999988875 999
Q ss_pred HHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCcccccC
Q 001400 228 ETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGI 307 (1085)
Q Consensus 228 E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 307 (1085)
||+.|+.... . ....+. ++.. .++..++. ++...+|.++. ....|
T Consensus 87 enl~~~~~~~----~-~~~~~~------------------~~~~---------~l~~~~~~--~~~~~~~~~~~-~~~~L 131 (229)
T 2pze_A 87 ENIIFGVSYD----E-YRYRSV------------------IKAC---------QLEEDISK--FAEKDNIVLGE-GGITL 131 (229)
T ss_dssp HHHHTTSCCC----H-HHHHHH------------------HHHT---------TCHHHHTT--STTGGGSCBCT-TCTTS
T ss_pred HHhhccCCcC----h-HHHHHH------------------HHHh---------CcHHHHHh--CcccccccccC-CCCcC
Confidence 9998853210 0 000000 0000 01111222 22334455553 35689
Q ss_pred chhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHH-HHHHhccCCEEEEEEecChhHHHhhcCeEEEecCCeE
Q 001400 308 SGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYL-KHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQI 386 (1085)
Q Consensus 308 SGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l-~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~~G~i 386 (1085)
||||||||+|||||+.+|++++|||||+|||+.++..+++.+ +++.+ + ++|+.++|+..++. .||++++|++|++
T Consensus 132 SgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~--~-~tvi~vtH~~~~~~-~~d~v~~l~~G~i 207 (229)
T 2pze_A 132 SGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMA--N-KTRILVTSKMEHLK-KADKILILHEGSS 207 (229)
T ss_dssp CHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCTT--T-SEEEEECCCHHHHH-HCSEEEEEETTEE
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhhC--C-CEEEEEcCChHHHH-hCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999964 44422 3 45566778877764 5999999999999
Q ss_pred EEecChhhHH
Q 001400 387 VYQGPRVSVL 396 (1085)
Q Consensus 387 v~~G~~~~~~ 396 (1085)
++.|+++++.
T Consensus 208 ~~~g~~~~~~ 217 (229)
T 2pze_A 208 YFYGTFSELQ 217 (229)
T ss_dssp EEEECHHHHH
T ss_pred EEECCHHHHH
Confidence 9999988774
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-37 Score=352.33 Aligned_cols=198 Identities=22% Similarity=0.278 Sum_probs=164.9
Q ss_pred CCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCCh---hcccceEEEEccCCCCCCC
Q 001400 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFARISGYCEQNDIHSPG 916 (1085)
Q Consensus 840 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gy~~Q~~~~~~~ 916 (1085)
++..+|+||||+|++||+++|+|||||||||||++|+|... .+|+|.++|.++.. ..+++.+||++|++.+++
T Consensus 32 ~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~---~~G~I~i~G~~i~~~~~~~~rr~ig~v~Q~~~lf~- 107 (390)
T 3gd7_A 32 GGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN---TEGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFS- 107 (390)
T ss_dssp SSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE---EEEEEEESSCBTTSSCHHHHHHTEEEESCCCCCCS-
T ss_pred CCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC---CCeEEEECCEECCcCChHHHhCCEEEEcCCcccCc-
Confidence 34679999999999999999999999999999999999864 57999999988653 335678999999999887
Q ss_pred CCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCC------CCCCCCCHHHHHHHHHHHHHhcCCCEE
Q 001400 917 LTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGL------PGINGLSTEQRKRLTIAVELVANPSIV 990 (1085)
Q Consensus 917 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~------~~~~~LS~Gqrqrl~iA~aL~~~p~il 990 (1085)
+||+||+.+.. ... ++.++++++.+++.++.+..... ....+|||||||||+|||||+.+|+||
T Consensus 108 ~tv~enl~~~~------~~~----~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P~lL 177 (390)
T 3gd7_A 108 GTFRKNLDPNA------AHS----DQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKIL 177 (390)
T ss_dssp EEHHHHHCTTC------CSC----HHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTCCEE
T ss_pred cCHHHHhhhcc------ccC----HHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhcCCCEE
Confidence 69999996431 111 23477899999998776654321 112349999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCC
Q 001400 991 FMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1085)
Q Consensus 991 llDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~ 1055 (1085)
||||||||||+..+..+++.|+++. .+.|+|++|||++ ....+|++++|++ |+++..|+..
T Consensus 178 LLDEPts~LD~~~~~~l~~~l~~~~-~~~tvi~vtHd~e--~~~~aDri~vl~~-G~i~~~g~~~ 238 (390)
T 3gd7_A 178 LLDEPSAHLDPVTYQIIRRTLKQAF-ADCTVILCEARIE--AMLECDQFLVIEE-NKVRQYDSIL 238 (390)
T ss_dssp EEESHHHHSCHHHHHHHHHHHHTTT-TTSCEEEECSSSG--GGTTCSEEEEEET-TEEEEESSHH
T ss_pred EEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEEcCHH--HHHhCCEEEEEEC-CEEEEECCHH
Confidence 9999999999999999999999863 5899999999975 4456999999985 7999998754
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-36 Score=324.39 Aligned_cols=186 Identities=24% Similarity=0.378 Sum_probs=149.0
Q ss_pred CeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCChhcccceEEEEccCCCCCCCCCHH
Q 001400 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVL 920 (1085)
Q Consensus 841 ~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gy~~Q~~~~~~~~tv~ 920 (1085)
+..+|+||||+|++||++||+||||||||||+++|+|..+ +.+|+|.++| .+||++|++.+++. ||+
T Consensus 20 ~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g----------~i~~v~q~~~~~~~-tv~ 86 (229)
T 2pze_A 20 GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE--PSEGKIKHSG----------RISFCSQFSWIMPG-TIK 86 (229)
T ss_dssp SCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEECS----------CEEEECSSCCCCSB-CHH
T ss_pred CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc--CCccEEEECC----------EEEEEecCCcccCC-CHH
Confidence 4578999999999999999999999999999999999876 5689999998 38999999988875 999
Q ss_pred HHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCccccc-------ccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q 001400 921 ESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGA-------LIGLPGINGLSTEQRKRLTIAVELVANPSIVFMD 993 (1085)
Q Consensus 921 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlD 993 (1085)
||+.|+... ... ..+++++.+++.+..+. ..+. .+.+||||||||++|||||+.+|++||||
T Consensus 87 enl~~~~~~------~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~LSgGqkqrv~lAral~~~p~lllLD 155 (229)
T 2pze_A 87 ENIIFGVSY------DEY----RYRSVIKACQLEEDISKFAEKDNIVLGE-GGITLSGGQRARISLARAVYKDADLYLLD 155 (229)
T ss_dssp HHHHTTSCC------CHH----HHHHHHHHTTCHHHHTTSTTGGGSCBCT-TCTTSCHHHHHHHHHHHHHHSCCSEEEEE
T ss_pred HHhhccCCc------ChH----HHHHHHHHhCcHHHHHhCcccccccccC-CCCcCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 999875311 111 12334444454332221 1121 23579999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHH-HHHHHHCCceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCC
Q 001400 994 EPTSGLDARAAAIVMRT-VRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1085)
Q Consensus 994 EPtsgLD~~~~~~i~~~-l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~ 1054 (1085)
|||+|||+.++..+++. ++++. +|+|||++||+++ ..+.||++++|++ |++++.|+.
T Consensus 156 EPts~LD~~~~~~i~~~l~~~~~-~~~tvi~vtH~~~--~~~~~d~v~~l~~-G~i~~~g~~ 213 (229)
T 2pze_A 156 SPFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKME--HLKKADKILILHE-GSSYFYGTF 213 (229)
T ss_dssp STTTTSCHHHHHHHHHHCCCCCT-TTSEEEEECCCHH--HHHHCSEEEEEET-TEEEEEECH
T ss_pred CcccCCCHHHHHHHHHHHHHHhh-CCCEEEEEcCChH--HHHhCCEEEEEEC-CEEEEECCH
Confidence 99999999999999997 45553 4899999999975 3356999999985 688888864
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-36 Score=326.73 Aligned_cols=187 Identities=25% Similarity=0.368 Sum_probs=148.6
Q ss_pred CeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCChhcccceEEEEccCCCCCCCCCHH
Q 001400 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVL 920 (1085)
Q Consensus 841 ~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gy~~Q~~~~~~~~tv~ 920 (1085)
+..+|+||||+|++||++||+||||||||||+++|+|..+ +.+|+|.++| .+||++|++.+ +..||+
T Consensus 17 ~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g----------~i~~v~Q~~~~-~~~tv~ 83 (237)
T 2cbz_A 17 DPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMD--KVEGHVAIKG----------SVAYVPQQAWI-QNDSLR 83 (237)
T ss_dssp SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSE--EEEEEEEECS----------CEEEECSSCCC-CSEEHH
T ss_pred CCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECC----------EEEEEcCCCcC-CCcCHH
Confidence 3568999999999999999999999999999999999876 6799999998 28999999864 578999
Q ss_pred HHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccc-------cccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q 001400 921 ESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSG-------ALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMD 993 (1085)
Q Consensus 921 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlD 993 (1085)
||+.++... . . . ..+++++.+++.+..+ ...+. .+.+||||||||++|||||+.+|+|||||
T Consensus 84 enl~~~~~~--~-~---~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~LSgGqkqRv~lAraL~~~p~lllLD 152 (237)
T 2cbz_A 84 ENILFGCQL--E-E---P----YYRSVIQACALLPDLEILPSGDRTEIGE-KGVNLSGGQKQRVSLARAVYSNADIYLFD 152 (237)
T ss_dssp HHHHTTSCC--C-T---T----HHHHHHHHTTCHHHHTTSTTGGGSEEST-TSBCCCHHHHHHHHHHHHHHHCCSEEEEE
T ss_pred HHhhCcccc--C-H---H----HHHHHHHHHhhHHHHHhccccccccccC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 999875321 1 1 1 1223344443321111 11121 23579999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHH---HHHHCCceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCC
Q 001400 994 EPTSGLDARAAAIVMRTVR---NIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1085)
Q Consensus 994 EPtsgLD~~~~~~i~~~l~---~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~ 1055 (1085)
|||+|||+.++..+++.|+ ++ .+|+|||++||+++. + ..||++++|++ |++++.|+..
T Consensus 153 EPts~LD~~~~~~i~~~l~~~~~~-~~~~tviivtH~~~~-~-~~~d~v~~l~~-G~i~~~g~~~ 213 (237)
T 2cbz_A 153 DPLSAVDAHVGKHIFENVIGPKGM-LKNKTRILVTHSMSY-L-PQVDVIIVMSG-GKISEMGSYQ 213 (237)
T ss_dssp STTTTSCHHHHHHHHHHTTSTTST-TTTSEEEEECSCSTT-G-GGSSEEEEEET-TEEEEEECHH
T ss_pred CcccccCHHHHHHHHHHHHHHHhh-cCCCEEEEEecChHH-H-HhCCEEEEEeC-CEEEEeCCHH
Confidence 9999999999999999995 33 358999999999874 3 57999999985 7888888753
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-36 Score=326.45 Aligned_cols=196 Identities=23% Similarity=0.347 Sum_probs=151.7
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCCCceEEEEccCCCCCCCCCHH
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVR 227 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 227 (1085)
.++|+|+|+.|++|++++|+|||||||||||++|+|.++|. +|+|.++| .++||+|++. ++.+||+
T Consensus 18 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g----------~i~~v~Q~~~-~~~~tv~ 83 (237)
T 2cbz_A 18 PPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKV---EGHVAIKG----------SVAYVPQQAW-IQNDSLR 83 (237)
T ss_dssp CCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEE---EEEEEECS----------CEEEECSSCC-CCSEEHH
T ss_pred CceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECC----------EEEEEcCCCc-CCCcCHH
Confidence 46999999999999999999999999999999999998765 99999998 4899999986 5688999
Q ss_pred HHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCC-cccccccccCccccc
Q 001400 228 ETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGL-DTCADTLVGDEMLKG 306 (1085)
Q Consensus 228 E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL-~~~~dt~vg~~~~~~ 306 (1085)
||+.|+.... ... ..+. .+ ...+++.+++ +...+|.++ +.+..
T Consensus 84 enl~~~~~~~--~~~---~~~~------------------~~------------~~~l~~~~~~~~~~~~~~~~-~~~~~ 127 (237)
T 2cbz_A 84 ENILFGCQLE--EPY---YRSV------------------IQ------------ACALLPDLEILPSGDRTEIG-EKGVN 127 (237)
T ss_dssp HHHHTTSCCC--TTH---HHHH------------------HH------------HTTCHHHHTTSTTGGGSEES-TTSBC
T ss_pred HHhhCccccC--HHH---HHHH------------------HH------------HHhhHHHHHhcccccccccc-CCCCC
Confidence 9998853211 000 0000 00 0001222333 222344444 44668
Q ss_pred CchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHH---HHHhccCCEEEEEEecChhHHHhhcCeEEEecC
Q 001400 307 ISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLK---HSTRALDGTTVISLLQPAPEAYELFDDVILLSE 383 (1085)
Q Consensus 307 LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~---~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~~ 383 (1085)
|||||||||+|||||+.+|++|+|||||+|||+.++..+++.|+ .+. .+++|+.++|+...+ ..||+|++|++
T Consensus 128 LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~---~~~tviivtH~~~~~-~~~d~v~~l~~ 203 (237)
T 2cbz_A 128 LSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGML---KNKTRILVTHSMSYL-PQVDVIIVMSG 203 (237)
T ss_dssp CCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTT---TTSEEEEECSCSTTG-GGSSEEEEEET
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhc---CCCEEEEEecChHHH-HhCCEEEEEeC
Confidence 99999999999999999999999999999999999999999985 332 244555577777765 57999999999
Q ss_pred CeEEEecChhhHHH
Q 001400 384 GQIVYQGPRVSVLD 397 (1085)
Q Consensus 384 G~iv~~G~~~~~~~ 397 (1085)
|++++.|+++++.+
T Consensus 204 G~i~~~g~~~~~~~ 217 (237)
T 2cbz_A 204 GKISEMGSYQELLA 217 (237)
T ss_dssp TEEEEEECHHHHHH
T ss_pred CEEEEeCCHHHHhh
Confidence 99999999988753
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-36 Score=368.60 Aligned_cols=208 Identities=25% Similarity=0.387 Sum_probs=166.8
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCC---CceEEEEccCCCCCCCC
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP---PRTSAYVSQQDWQVAEM 224 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 224 (1085)
.++|+|+|+++++||+++|+||||||||||+++|+|.++|. +|+|.++|+++.+... ++.++||+|++++++.
T Consensus 354 ~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~---~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~- 429 (578)
T 4a82_A 354 APILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVT---SGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSD- 429 (578)
T ss_dssp CCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCS---EEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCSS-
T ss_pred CcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCC---CcEEEECCEEhhhCCHHHHhhheEEEeCCCccCcc-
Confidence 46999999999999999999999999999999999999886 9999999998876542 4579999999998875
Q ss_pred CHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCccc
Q 001400 225 TVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEML 304 (1085)
Q Consensus 225 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 304 (1085)
||+||+.|+... ...+.+.+.++. .+ .++. .-.+++..||.+|+. .
T Consensus 430 tv~eni~~~~~~----~~~~~~~~~~~~---~~------------------------~~~~--~~~lp~g~~t~~~~~-g 475 (578)
T 4a82_A 430 TVKENILLGRPT----ATDEEVVEAAKM---AN------------------------AHDF--IMNLPQGYDTEVGER-G 475 (578)
T ss_dssp BHHHHHGGGCSS----CCHHHHHHHHHH---TT------------------------CHHH--HHTSTTGGGCBCCGG-G
T ss_pred cHHHHHhcCCCC----CCHHHHHHHHHH---hC------------------------cHHH--HHhCcchhhhhhccC-C
Confidence 999999885311 111111111100 00 0111 224667889999864 5
Q ss_pred ccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEecCC
Q 001400 305 KGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEG 384 (1085)
Q Consensus 305 ~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~~G 384 (1085)
.+|||||||||+|||||+.+|++++|||||||||+.++..+.+.++++.+ ++|+ +.++|+.+.+ ..||+|++|++|
T Consensus 476 ~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~t~-i~itH~l~~~-~~~d~i~~l~~G 551 (578)
T 4a82_A 476 VKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSK--DRTT-LIVAHRLSTI-THADKIVVIENG 551 (578)
T ss_dssp TTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT--TSEE-EEECSSGGGT-TTCSEEEEEETT
T ss_pred CcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcC--CCEE-EEEecCHHHH-HcCCEEEEEECC
Confidence 57999999999999999999999999999999999999999999998743 4454 5577877776 459999999999
Q ss_pred eEEEecChhhHHH
Q 001400 385 QIVYQGPRVSVLD 397 (1085)
Q Consensus 385 ~iv~~G~~~~~~~ 397 (1085)
+++++|+++++.+
T Consensus 552 ~i~~~g~~~el~~ 564 (578)
T 4a82_A 552 HIVETGTHRELIA 564 (578)
T ss_dssp EEEEEECHHHHHH
T ss_pred EEEEECCHHHHHh
Confidence 9999999998864
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-36 Score=366.95 Aligned_cols=208 Identities=27% Similarity=0.383 Sum_probs=166.7
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCC---CceEEEEccCCCCCCCC
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP---PRTSAYVSQQDWQVAEM 224 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 224 (1085)
.++|+|+|+++++||+++|+||||||||||+++|+|.++|. +|+|.+||+++.+... ++.++||+|++.+++ .
T Consensus 356 ~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~---~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~ 431 (587)
T 3qf4_A 356 DPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPE---RGRVEVDELDVRTVKLKDLRGHISAVPQETVLFS-G 431 (587)
T ss_dssp CCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCS---EEEEEESSSBGGGBCHHHHHHHEEEECSSCCCCS-E
T ss_pred CcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCC---CcEEEECCEEcccCCHHHHHhheEEECCCCcCcC-c
Confidence 46999999999999999999999999999999999999886 9999999999876543 467999999999886 4
Q ss_pred CHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCccc
Q 001400 225 TVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEML 304 (1085)
Q Consensus 225 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 304 (1085)
||+||+.++... ...+...+.+ +..+ .++. .-.+++..||.+|+. .
T Consensus 432 tv~eni~~~~~~----~~~~~~~~~~---~~~~------------------------~~~~--i~~l~~g~~~~~~~~-~ 477 (587)
T 3qf4_A 432 TIKENLKWGRED----ATDDEIVEAA---KIAQ------------------------IHDF--IISLPEGYDSRVERG-G 477 (587)
T ss_dssp EHHHHHTTTCSS----CCHHHHHHHH---HHTT------------------------CHHH--HHTSSSGGGCEECSS-S
T ss_pred cHHHHHhccCCC----CCHHHHHHHH---HHhC------------------------cHHH--HHhcccchhhHhcCC-C
Confidence 999999875321 0001111100 0000 1111 124667788999864 5
Q ss_pred ccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEecCC
Q 001400 305 KGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEG 384 (1085)
Q Consensus 305 ~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~~G 384 (1085)
.+|||||||||+|||||+.+|++|+||||||+||+.++..|.+.++++.+ ++ +++.++|..+.+ ..||+|++|++|
T Consensus 478 ~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~-tvi~itH~l~~~-~~~d~i~vl~~G 553 (587)
T 3qf4_A 478 RNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTK--GC-TTFIITQKIPTA-LLADKILVLHEG 553 (587)
T ss_dssp CSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHST--TC-EEEEEESCHHHH-TTSSEEEEEETT
T ss_pred CCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhCC--CC-EEEEEecChHHH-HhCCEEEEEECC
Confidence 67999999999999999999999999999999999999999999998742 44 455577777765 589999999999
Q ss_pred eEEEecChhhHHH
Q 001400 385 QIVYQGPRVSVLD 397 (1085)
Q Consensus 385 ~iv~~G~~~~~~~ 397 (1085)
+++++|+++++.+
T Consensus 554 ~i~~~g~~~el~~ 566 (587)
T 3qf4_A 554 KVAGFGTHKELLE 566 (587)
T ss_dssp EEEEEECHHHHHH
T ss_pred EEEEECCHHHHHh
Confidence 9999999999864
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-36 Score=321.92 Aligned_cols=188 Identities=18% Similarity=0.243 Sum_probs=156.1
Q ss_pred eecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCCCceEEEEccCCCCCCCCCHHH
Q 001400 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRE 228 (1085)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E 228 (1085)
++|+|+|+.|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++. ..++.++||+|++.+++.+||+|
T Consensus 23 ~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~~~--~~~~~i~~v~q~~~~~~~~tv~e 97 (214)
T 1sgw_A 23 PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPL---KGEIIYNGVPIT--KVKGKIFFLPEEIIVPRKISVED 97 (214)
T ss_dssp EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEEGG--GGGGGEEEECSSCCCCTTSBHHH
T ss_pred eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEhh--hhcCcEEEEeCCCcCCCCCCHHH
Confidence 6999999999999999999999999999999999999876 999999998775 23567999999998899999999
Q ss_pred HHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCcccccCc
Q 001400 229 TLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGIS 308 (1085)
Q Consensus 229 ~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LS 308 (1085)
|+.|+....+. . .. ..+++++++.+||++. +.. +..||
T Consensus 98 nl~~~~~~~~~-~----------------------------------~~-~~~~~~~l~~~gl~~~-~~~-----~~~LS 135 (214)
T 1sgw_A 98 YLKAVASLYGV-K----------------------------------VN-KNEIMDALESVEVLDL-KKK-----LGELS 135 (214)
T ss_dssp HHHHHHHHTTC-C----------------------------------CC-HHHHHHHHHHTTCCCT-TSB-----GGGSC
T ss_pred HHHHHHHhcCC-c----------------------------------hH-HHHHHHHHHHcCCCcC-CCC-----hhhCC
Confidence 99886432210 0 00 2247788999999865 544 45799
Q ss_pred hhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEecCCeE
Q 001400 309 GGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQI 386 (1085)
Q Consensus 309 GGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~~G~i 386 (1085)
|||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++.+. +. +|+.++|+..++..++|+|+++ .|+|
T Consensus 136 gGqkqrv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~-g~-tiiivtHd~~~~~~~~d~v~~~-~~~~ 210 (214)
T 1sgw_A 136 QGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKE-KG-IVIISSREELSYCDVNENLHKY-STKI 210 (214)
T ss_dssp HHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHH-HS-EEEEEESSCCTTSSEEEEGGGG-BC--
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhC-CC-EEEEEeCCHHHHHHhCCEEEEe-CCcc
Confidence 99999999999999999999999999999999999999999998753 34 4555778888888888887754 4443
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-35 Score=361.42 Aligned_cols=202 Identities=24% Similarity=0.368 Sum_probs=165.0
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCC---CCceEEEEccCCCCCCCC
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV---PPRTSAYVSQQDWQVAEM 224 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~---~~~~~~yv~Q~d~~~~~l 224 (1085)
+++|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.+||+++.+.. .++.++||+|++.+++ .
T Consensus 356 ~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~-~ 431 (582)
T 3b5x_A 356 KPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVD---SGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFN-D 431 (582)
T ss_pred ccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CCEEEECCEEhhhCCHHHHhcCeEEEcCCCcccc-c
Confidence 46999999999999999999999999999999999999886 999999999886543 2467999999998886 5
Q ss_pred CHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhC-------Ccccccc
Q 001400 225 TVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILG-------LDTCADT 297 (1085)
Q Consensus 225 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lg-------L~~~~dt 297 (1085)
||+||+.++.. . ....+ .++++++.+| +++..||
T Consensus 432 tv~eni~~~~~-~--~~~~~------------------------------------~~~~~~~~~~l~~~~~~~p~g~~t 472 (582)
T 3b5x_A 432 TIANNIAYAAE-G--EYTRE------------------------------------QIEQAARQAHAMEFIENMPQGLDT 472 (582)
T ss_pred cHHHHHhccCC-C--CCCHH------------------------------------HHHHHHHHCCCHHHHHhCcccccc
Confidence 99999988531 0 00000 1222333333 3456789
Q ss_pred cccCcccccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCe
Q 001400 298 LVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDD 377 (1085)
Q Consensus 298 ~vg~~~~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ 377 (1085)
.+|+. ..+||||||||++|||||+.+|++|+|||||||||+.++..+.+.|+++.+ ++|+ +.++|+...+ ..||+
T Consensus 473 ~~~~~-~~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tv-i~itH~~~~~-~~~d~ 547 (582)
T 3b5x_A 473 VIGEN-GTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQK--NKTV-LVIAHRLSTI-EQADE 547 (582)
T ss_pred hhcCC-CCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcC--CCEE-EEEecCHHHH-HhCCE
Confidence 99864 568999999999999999999999999999999999999999999998753 4554 4466776665 47999
Q ss_pred EEEecCCeEEEecChhhHHH
Q 001400 378 VILLSEGQIVYQGPRVSVLD 397 (1085)
Q Consensus 378 ii~L~~G~iv~~G~~~~~~~ 397 (1085)
|++|++|++++.|+++++.+
T Consensus 548 i~~l~~G~i~~~g~~~~l~~ 567 (582)
T 3b5x_A 548 ILVVDEGEIIERGRHADLLA 567 (582)
T ss_pred EEEEECCEEEEECCHHHHHh
Confidence 99999999999999988753
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-35 Score=361.60 Aligned_cols=202 Identities=23% Similarity=0.371 Sum_probs=165.8
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCC---CceEEEEccCCCCCCCC
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP---PRTSAYVSQQDWQVAEM 224 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 224 (1085)
+++|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.+||+++.+... ++.++||+|++.+++ .
T Consensus 356 ~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~-~ 431 (582)
T 3b60_A 356 VPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDID---EGHILMDGHDLREYTLASLRNQVALVSQNVHLFN-D 431 (582)
T ss_dssp CCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCS---EEEEEETTEETTTBCHHHHHHTEEEECSSCCCCS-S
T ss_pred CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCC---CCeEEECCEEccccCHHHHHhhCeEEccCCcCCC-C
Confidence 46999999999999999999999999999999999999886 9999999999876532 357999999998887 5
Q ss_pred CHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhC-------Ccccccc
Q 001400 225 TVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILG-------LDTCADT 297 (1085)
Q Consensus 225 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lg-------L~~~~dt 297 (1085)
||+||+.|+.. . ....+ .++++++.+| +++..||
T Consensus 432 tv~eni~~~~~-~--~~~~~------------------------------------~~~~~l~~~~l~~~~~~~p~g~~~ 472 (582)
T 3b60_A 432 TVANNIAYART-E--EYSRE------------------------------------QIEEAARMAYAMDFINKMDNGLDT 472 (582)
T ss_dssp BHHHHHHTTTT-S--CCCHH------------------------------------HHHHHHHTTTCHHHHHHSTTGGGS
T ss_pred CHHHHHhccCC-C--CCCHH------------------------------------HHHHHHHHcCCHHHHHhccccccc
Confidence 99999998531 0 00000 1222333333 4456789
Q ss_pred cccCcccccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCe
Q 001400 298 LVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDD 377 (1085)
Q Consensus 298 ~vg~~~~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ 377 (1085)
.+|+. ..+|||||||||+|||||+.+|++|+|||||||||+.++..+.+.++++.+ ++| ++.++|....+ ..||+
T Consensus 473 ~~~~~-~~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~t-vi~itH~~~~~-~~~d~ 547 (582)
T 3b60_A 473 IIGEN-GVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK--NRT-SLVIAHRLSTI-EQADE 547 (582)
T ss_dssp BCCTT-SCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT--TSE-EEEECSCGGGT-TTCSE
T ss_pred cccCC-CCCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhC--CCE-EEEEeccHHHH-HhCCE
Confidence 99864 568999999999999999999999999999999999999999999998853 455 44566776665 57999
Q ss_pred EEEecCCeEEEecChhhHHH
Q 001400 378 VILLSEGQIVYQGPRVSVLD 397 (1085)
Q Consensus 378 ii~L~~G~iv~~G~~~~~~~ 397 (1085)
|++|++|++++.|+++++.+
T Consensus 548 i~~l~~G~i~~~g~~~~l~~ 567 (582)
T 3b60_A 548 IVVVEDGIIVERGTHSELLA 567 (582)
T ss_dssp EEEEETTEEEEEECHHHHHH
T ss_pred EEEEECCEEEEecCHHHHHH
Confidence 99999999999999998864
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-36 Score=365.56 Aligned_cols=208 Identities=23% Similarity=0.317 Sum_probs=165.8
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCC---CceEEEEccCCCCCCCC
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP---PRTSAYVSQQDWQVAEM 224 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 224 (1085)
.++|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.+||+++.+... ++.++||+|++.+++ .
T Consensus 368 ~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~---~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~ 443 (598)
T 3qf4_B 368 KPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVD---RGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFS-T 443 (598)
T ss_dssp SCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCS---EEEEEETTEEGGGSCHHHHHHHEEEECTTCCCCS-S
T ss_pred CccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCC---CeEEEECCEEhhhCCHHHHHhceEEEeCCCcccc-c
Confidence 46999999999999999999999999999999999999886 9999999998876543 467999999998775 5
Q ss_pred CHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCccc
Q 001400 225 TVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEML 304 (1085)
Q Consensus 225 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 304 (1085)
||+||+.++... ...+.+.+.+ ...+ .+..+ -.+++..||.+|+. .
T Consensus 444 tv~eni~~~~~~----~~~~~~~~~~---------------------~~~~------~~~~~--~~~~~g~~t~~~~~-g 489 (598)
T 3qf4_B 444 TVKENLKYGNPG----ATDEEIKEAA---------------------KLTH------SDHFI--KHLPEGYETVLTDN-G 489 (598)
T ss_dssp BHHHHHHSSSTT----CCTTHHHHHT---------------------TTTT------CHHHH--HTSTTGGGCBCHHH-H
T ss_pred cHHHHHhcCCCC----CCHHHHHHHH---------------------HHhC------CHHHH--HhccccccchhcCC-C
Confidence 999999885321 0001111000 0000 11111 23566788999864 4
Q ss_pred ccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEecCC
Q 001400 305 KGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEG 384 (1085)
Q Consensus 305 ~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~~G 384 (1085)
.+|||||||||+|||||+.+|++|+|||||||||+.++..+.+.++++.+ ++| ++.++|....+. .||+|++|++|
T Consensus 490 ~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~t-~i~itH~l~~~~-~~d~i~~l~~G 565 (598)
T 3qf4_B 490 EDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLME--GKT-SIIIAHRLNTIK-NADLIIVLRDG 565 (598)
T ss_dssp TTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHHT--TSE-EEEESCCTTHHH-HCSEEEEECSS
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHcC--CCE-EEEEecCHHHHH-cCCEEEEEECC
Confidence 57999999999999999999999999999999999999999999998753 445 455777777664 49999999999
Q ss_pred eEEEecChhhHHH
Q 001400 385 QIVYQGPRVSVLD 397 (1085)
Q Consensus 385 ~iv~~G~~~~~~~ 397 (1085)
+++++|+++++.+
T Consensus 566 ~i~~~g~~~~l~~ 578 (598)
T 3qf4_B 566 EIVEMGKHDELIQ 578 (598)
T ss_dssp SEEECSCHHHHHH
T ss_pred EEEEECCHHHHHh
Confidence 9999999998864
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-35 Score=359.51 Aligned_cols=212 Identities=24% Similarity=0.399 Sum_probs=170.9
Q ss_pred eeeeccceeeeeccccccccccccCCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccC
Q 001400 816 SMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPK 895 (1085)
Q Consensus 816 ~~~~~~~~y~v~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 895 (1085)
.+.++|+++.++. ++..+|+||||++++||++||+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 339 ~i~~~~v~~~y~~-----------~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~--p~~G~i~~~g~~~ 405 (578)
T 4a82_A 339 RIDIDHVSFQYND-----------NEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYD--VTSGQILIDGHNI 405 (578)
T ss_dssp CEEEEEEEECSCS-----------SSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSC--CSEEEEEETTEEG
T ss_pred eEEEEEEEEEcCC-----------CCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCC--CCCcEEEECCEEh
Confidence 4667777665421 23568999999999999999999999999999999999876 5699999999886
Q ss_pred Ch---hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCccc-------ccccCCCC
Q 001400 896 RQ---ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLS-------GALIGLPG 965 (1085)
Q Consensus 896 ~~---~~~~~~~gy~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~ 965 (1085)
+. ..+++.+|||+|++.+++. ||+||+.++. +. .. ++.++++++..++.+.. +..++..
T Consensus 406 ~~~~~~~~r~~i~~v~Q~~~l~~~-tv~eni~~~~----~~-~~----~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~- 474 (578)
T 4a82_A 406 KDFLTGSLRNQIGLVQQDNILFSD-TVKENILLGR----PT-AT----DEEVVEAAKMANAHDFIMNLPQGYDTEVGER- 474 (578)
T ss_dssp GGSCHHHHHHTEEEECSSCCCCSS-BHHHHHGGGC----SS-CC----HHHHHHHHHHTTCHHHHHTSTTGGGCBCCGG-
T ss_pred hhCCHHHHhhheEEEeCCCccCcc-cHHHHHhcCC----CC-CC----HHHHHHHHHHhCcHHHHHhCcchhhhhhccC-
Confidence 53 3467789999999998876 9999998763 11 11 12355666666664432 2223322
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEecC
Q 001400 966 INGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 1045 (1085)
Q Consensus 966 ~~~LS~Gqrqrl~iA~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~g 1045 (1085)
+.+||||||||++|||||+++|+||+|||||||||+.+++.+.+.++++. +++|+|++|||++. .+.||++++|++
T Consensus 475 g~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~--~~~~d~i~~l~~- 550 (578)
T 4a82_A 475 GVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLS-KDRTTLIVAHRLST--ITHADKIVVIEN- 550 (578)
T ss_dssp GTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSSGGG--TTTCSEEEEEET-
T ss_pred CCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH--HHcCCEEEEEEC-
Confidence 34799999999999999999999999999999999999999999999874 58999999999873 467999999985
Q ss_pred cEEEEecCCC
Q 001400 1046 GELIYAGPLG 1055 (1085)
Q Consensus 1046 G~~~~~g~~~ 1055 (1085)
|++++.|+..
T Consensus 551 G~i~~~g~~~ 560 (578)
T 4a82_A 551 GHIVETGTHR 560 (578)
T ss_dssp TEEEEEECHH
T ss_pred CEEEEECCHH
Confidence 7999999854
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-35 Score=362.70 Aligned_cols=213 Identities=21% Similarity=0.302 Sum_probs=170.8
Q ss_pred eeeeccceeeeeccccccccccccCCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccC
Q 001400 816 SMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPK 895 (1085)
Q Consensus 816 ~~~~~~~~y~v~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 895 (1085)
.+.++|+++.++ .++..+|+|+||+|++||++||+||||||||||+++|+|..+ +.+|+|.+||.++
T Consensus 341 ~i~~~~v~~~y~-----------~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~--~~~G~i~i~g~~i 407 (587)
T 3qf4_A 341 SVSFENVEFRYF-----------ENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLID--PERGRVEVDELDV 407 (587)
T ss_dssp CEEEEEEEECSS-----------SSSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSC--CSEEEEEESSSBG
T ss_pred cEEEEEEEEEcC-----------CCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcc--CCCcEEEECCEEc
Confidence 567777766552 123568999999999999999999999999999999999876 5699999999987
Q ss_pred Ch---hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcc-------cccccCCCC
Q 001400 896 RQ---ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSL-------SGALIGLPG 965 (1085)
Q Consensus 896 ~~---~~~~~~~gy~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~~~~~ 965 (1085)
.. ..+++.+|||+|++.+++. |++||+.++.. .... +.++++++..++.+. .+..++..
T Consensus 408 ~~~~~~~~r~~i~~v~Q~~~lf~~-tv~eni~~~~~-----~~~~----~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~- 476 (587)
T 3qf4_A 408 RTVKLKDLRGHISAVPQETVLFSG-TIKENLKWGRE-----DATD----DEIVEAAKIAQIHDFIISLPEGYDSRVERG- 476 (587)
T ss_dssp GGBCHHHHHHHEEEECSSCCCCSE-EHHHHHTTTCS-----SCCH----HHHHHHHHHTTCHHHHHTSSSGGGCEECSS-
T ss_pred ccCCHHHHHhheEEECCCCcCcCc-cHHHHHhccCC-----CCCH----HHHHHHHHHhCcHHHHHhcccchhhHhcCC-
Confidence 53 3467789999999998865 99999987531 1111 224455555555332 22333333
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEecC
Q 001400 966 INGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 1045 (1085)
Q Consensus 966 ~~~LS~Gqrqrl~iA~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~g 1045 (1085)
+.+||||||||++|||||+++|+||+||||||+||+.+++.+++.++++. +|+|+|++|||++ ....||++++|++
T Consensus 477 ~~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~--~~~~~d~i~vl~~- 552 (587)
T 3qf4_A 477 GRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYT-KGCTTFIITQKIP--TALLADKILVLHE- 552 (587)
T ss_dssp SCSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHS-TTCEEEEEESCHH--HHTTSSEEEEEET-
T ss_pred CCCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhC-CCCEEEEEecChH--HHHhCCEEEEEEC-
Confidence 35799999999999999999999999999999999999999999999974 5999999999976 4568999999985
Q ss_pred cEEEEecCCCC
Q 001400 1046 GELIYAGPLGS 1056 (1085)
Q Consensus 1046 G~~~~~g~~~~ 1056 (1085)
|++++.|+..+
T Consensus 553 G~i~~~g~~~e 563 (587)
T 3qf4_A 553 GKVAGFGTHKE 563 (587)
T ss_dssp TEEEEEECHHH
T ss_pred CEEEEECCHHH
Confidence 79999998643
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-35 Score=359.95 Aligned_cols=197 Identities=26% Similarity=0.357 Sum_probs=164.7
Q ss_pred eEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCCh---hcccceEEEEccCCCCCCCCC
Q 001400 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFARISGYCEQNDIHSPGLT 918 (1085)
Q Consensus 842 ~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gy~~Q~~~~~~~~t 918 (1085)
..+|+|+|+++++||++||+||||||||||+++|+|..+ +.+|+|.++|.++.. ..+++.+||++|++.+++. |
T Consensus 356 ~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~--p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~-t 432 (582)
T 3b60_A 356 VPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYD--IDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFND-T 432 (582)
T ss_dssp CCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTC--CSEEEEEETTEETTTBCHHHHHHTEEEECSSCCCCSS-B
T ss_pred CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccC--CCCCeEEECCEEccccCHHHHHhhCeEEccCCcCCCC-C
Confidence 568999999999999999999999999999999999876 568999999988653 3456789999999998875 9
Q ss_pred HHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccc-------cccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEE
Q 001400 919 VLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSG-------ALIGLPGINGLSTEQRKRLTIAVELVANPSIVF 991 (1085)
Q Consensus 919 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~ill 991 (1085)
|+||+.++.. + +.. ++.++++++.+++.+..+ ..++.. +.+||||||||++|||||+++|+||+
T Consensus 433 v~eni~~~~~---~-~~~----~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~-~~~LSgGq~qrl~iAral~~~p~ill 503 (582)
T 3b60_A 433 VANNIAYART---E-EYS----REQIEEAARMAYAMDFINKMDNGLDTIIGEN-GVLLSGGQRQRIAIARALLRDSPILI 503 (582)
T ss_dssp HHHHHHTTTT---S-CCC----HHHHHHHHHTTTCHHHHHHSTTGGGSBCCTT-SCSSCHHHHHHHHHHHHHHHCCSEEE
T ss_pred HHHHHhccCC---C-CCC----HHHHHHHHHHcCCHHHHHhccccccccccCC-CCCCCHHHHHHHHHHHHHHhCCCEEE
Confidence 9999988531 1 111 234677888887765432 233333 35799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCC
Q 001400 992 MDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1085)
Q Consensus 992 lDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~ 1054 (1085)
||||||+||+.+++.+++.++++. +|+|+|++||+++. .+.||++++|++ |++++.|+.
T Consensus 504 lDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~--~~~~d~i~~l~~-G~i~~~g~~ 562 (582)
T 3b60_A 504 LDEATSALDTESERAIQAALDELQ-KNRTSLVIAHRLST--IEQADEIVVVED-GIIVERGTH 562 (582)
T ss_dssp EETTTSSCCHHHHHHHHHHHHHHH-TTSEEEEECSCGGG--TTTCSEEEEEET-TEEEEEECH
T ss_pred EECccccCCHHHHHHHHHHHHHHh-CCCEEEEEeccHHH--HHhCCEEEEEEC-CEEEEecCH
Confidence 999999999999999999999986 49999999999863 467999999985 789988874
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-35 Score=359.58 Aligned_cols=213 Identities=24% Similarity=0.349 Sum_probs=172.7
Q ss_pred eeeeccceeeeeccccccccccccCCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccC
Q 001400 816 SMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPK 895 (1085)
Q Consensus 816 ~~~~~~~~y~v~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 895 (1085)
.+.++|+++.++. ++..+|+|+|+++++||++||+||||||||||+++|+|..+ +.+|+|.+||.++
T Consensus 341 ~i~~~~v~~~y~~-----------~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~--p~~G~i~~~g~~~ 407 (582)
T 3b5x_A 341 EVDVKDVTFTYQG-----------KEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYD--VDSGSICLDGHDV 407 (582)
T ss_pred eEEEEEEEEEcCC-----------CCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCCEEEECCEEh
Confidence 4666666665420 12569999999999999999999999999999999999876 5689999999886
Q ss_pred Ch---hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccc-------cCCCC
Q 001400 896 RQ---ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGAL-------IGLPG 965 (1085)
Q Consensus 896 ~~---~~~~~~~gy~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-------~~~~~ 965 (1085)
.. ..+++.+||++|++.+++. ||+||+.++.. + +.. ++.++++++.+++.+..+.. ++..
T Consensus 408 ~~~~~~~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~---~-~~~----~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~- 477 (582)
T 3b5x_A 408 RDYKLTNLRRHFALVSQNVHLFND-TIANNIAYAAE---G-EYT----REQIEQAARQAHAMEFIENMPQGLDTVIGEN- 477 (582)
T ss_pred hhCCHHHHhcCeEEEcCCCccccc-cHHHHHhccCC---C-CCC----HHHHHHHHHHCCCHHHHHhCcccccchhcCC-
Confidence 43 3467789999999998875 99999987531 1 111 23467888888876554332 2322
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEecC
Q 001400 966 INGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 1045 (1085)
Q Consensus 966 ~~~LS~Gqrqrl~iA~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~g 1045 (1085)
+.+||||||||++|||||+++|+||+||||||+||+.+++.+++.|+++. +|+|+|++||+++ ..+.||++++|++
T Consensus 478 ~~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~--~~~~~d~i~~l~~- 553 (582)
T 3b5x_A 478 GTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQ-KNKTVLVIAHRLS--TIEQADEILVVDE- 553 (582)
T ss_pred CCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH--HHHhCCEEEEEEC-
Confidence 35799999999999999999999999999999999999999999999985 4999999999976 4467999999985
Q ss_pred cEEEEecCCC
Q 001400 1046 GELIYAGPLG 1055 (1085)
Q Consensus 1046 G~~~~~g~~~ 1055 (1085)
|++++.|+..
T Consensus 554 G~i~~~g~~~ 563 (582)
T 3b5x_A 554 GEIIERGRHA 563 (582)
T ss_pred CEEEEECCHH
Confidence 7899888753
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-34 Score=355.05 Aligned_cols=211 Identities=25% Similarity=0.391 Sum_probs=167.9
Q ss_pred eeeeccceeeeeccccccccccccCCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccC
Q 001400 816 SMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPK 895 (1085)
Q Consensus 816 ~~~~~~~~y~v~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 895 (1085)
.+.++|+++.++ ++..+|+|||+++++||++||+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 354 ~i~~~~v~~~y~------------~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~--p~~G~i~~~g~~i 419 (598)
T 3qf4_B 354 EIEFKNVWFSYD------------KKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYD--VDRGQILVDGIDI 419 (598)
T ss_dssp CEEEEEEECCSS------------SSSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSC--CSEEEEEETTEEG
T ss_pred eEEEEEEEEECC------------CCCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcC--CCCeEEEECCEEh
Confidence 466666665542 23468999999999999999999999999999999999876 5699999999886
Q ss_pred Ch---hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccc-------cCCCC
Q 001400 896 RQ---ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGAL-------IGLPG 965 (1085)
Q Consensus 896 ~~---~~~~~~~gy~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-------~~~~~ 965 (1085)
.. ..+++.+||++|++.+++ .||+||+.++.. ... ++.++++++.+++.+..+.+ ++. .
T Consensus 420 ~~~~~~~~r~~i~~v~Q~~~lf~-~tv~eni~~~~~-----~~~----~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~-~ 488 (598)
T 3qf4_B 420 RKIKRSSLRSSIGIVLQDTILFS-TTVKENLKYGNP-----GAT----DEEIKEAAKLTHSDHFIKHLPEGYETVLTD-N 488 (598)
T ss_dssp GGSCHHHHHHHEEEECTTCCCCS-SBHHHHHHSSST-----TCC----TTHHHHHTTTTTCHHHHHTSTTGGGCBCHH-H
T ss_pred hhCCHHHHHhceEEEeCCCcccc-ccHHHHHhcCCC-----CCC----HHHHHHHHHHhCCHHHHHhccccccchhcC-C
Confidence 53 346778999999998886 599999987521 111 12244555555554332222 111 1
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEecC
Q 001400 966 INGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 1045 (1085)
Q Consensus 966 ~~~LS~Gqrqrl~iA~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~g 1045 (1085)
+.+||||||||++|||||+++|+||+||||||+||+.++..+++.++++. +|+|+|++||+++. .+.||++++|++
T Consensus 489 g~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~--~~~~d~i~~l~~- 564 (598)
T 3qf4_B 489 GEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLM-EGKTSIIIAHRLNT--IKNADLIIVLRD- 564 (598)
T ss_dssp HTTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHH-TTSEEEEESCCTTH--HHHCSEEEEECS-
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH--HHcCCEEEEEEC-
Confidence 24799999999999999999999999999999999999999999999985 69999999999873 456999999985
Q ss_pred cEEEEecCCC
Q 001400 1046 GELIYAGPLG 1055 (1085)
Q Consensus 1046 G~~~~~g~~~ 1055 (1085)
|++++.|+..
T Consensus 565 G~i~~~g~~~ 574 (598)
T 3qf4_B 565 GEIVEMGKHD 574 (598)
T ss_dssp SSEEECSCHH
T ss_pred CEEEEECCHH
Confidence 7899998754
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-35 Score=386.35 Aligned_cols=213 Identities=25% Similarity=0.370 Sum_probs=169.8
Q ss_pred CcceeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCC---CceEEEEccCCCCC
Q 001400 145 RSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP---PRTSAYVSQQDWQV 221 (1085)
Q Consensus 145 ~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~---~~~~~yv~Q~d~~~ 221 (1085)
+.+.++|+|+|++|+|||.++|+||+|||||||+++|.|+++|. +|+|.+||.++.+... ++.++||||++.+|
T Consensus 1089 ~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~---~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF 1165 (1321)
T 4f4c_A 1089 RPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTL---GGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLF 1165 (1321)
T ss_dssp SCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCS---SSEEEETTEETTTBCHHHHHTTEEEECSSCCCC
T ss_pred CCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCC---CCEEEECCEEhhhCCHHHHHhheEEECCCCEee
Confidence 34557999999999999999999999999999999999999886 9999999999988753 57899999999877
Q ss_pred CCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccC
Q 001400 222 AEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGD 301 (1085)
Q Consensus 222 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 301 (1085)
. .||||||.|+..-. ....+.+.++++. ++ ..+. +-.|++..||.||+
T Consensus 1166 ~-gTIreNI~~gld~~--~~sd~ei~~Al~~---a~------------------------l~~~--I~~Lp~GldT~vge 1213 (1321)
T 4f4c_A 1166 D-CSIAENIIYGLDPS--SVTMAQVEEAARL---AN------------------------IHNF--IAELPEGFETRVGD 1213 (1321)
T ss_dssp S-EEHHHHHSSSSCTT--TSCHHHHHHHHHH---TT------------------------CHHH--HHTSTTTTCSEETT
T ss_pred C-ccHHHHHhccCCCC--CCCHHHHHHHHHH---hC------------------------ChHH--HHcCcCCCCCEecC
Confidence 6 59999998863211 0011111111110 00 0111 23578899999997
Q ss_pred cccccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEe
Q 001400 302 EMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILL 381 (1085)
Q Consensus 302 ~~~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L 381 (1085)
.+ .+||||||||++|||||+.+|+||+||||||+||+.|...|.+.|++..+ ++ |++++.|... +...||+|+||
T Consensus 1214 ~G-~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~--~~-TvI~IAHRLs-Ti~~aD~I~Vl 1288 (1321)
T 4f4c_A 1214 RG-TQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRARE--GR-TCIVIAHRLN-TVMNADCIAVV 1288 (1321)
T ss_dssp TS-CSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTSS--SS-EEEEECSSSS-TTTTCSEEEEE
T ss_pred CC-cccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHcC--CC-EEEEeccCHH-HHHhCCEEEEE
Confidence 54 57999999999999999999999999999999999999999999987532 34 4555667654 45679999999
Q ss_pred cCCeEEEecChhhHHH
Q 001400 382 SEGQIVYQGPRVSVLD 397 (1085)
Q Consensus 382 ~~G~iv~~G~~~~~~~ 397 (1085)
++|+|+++|+++++++
T Consensus 1289 d~G~IvE~Gth~eLl~ 1304 (1321)
T 4f4c_A 1289 SNGTIIEKGTHTQLMS 1304 (1321)
T ss_dssp SSSSEEEEECHHHHHH
T ss_pred ECCEEEEECCHHHHHh
Confidence 9999999999999985
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-34 Score=320.86 Aligned_cols=185 Identities=23% Similarity=0.383 Sum_probs=147.1
Q ss_pred eEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCChhcccceEEEEccCCCCCCCCCHHH
Q 001400 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLE 921 (1085)
Q Consensus 842 ~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gy~~Q~~~~~~~~tv~e 921 (1085)
..+|+||||+|++|+++||+||||||||||+++|+|... +.+|+|.++| .+||++|++.+++. ||+|
T Consensus 51 ~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g----------~i~~v~Q~~~l~~~-tv~e 117 (290)
T 2bbs_A 51 TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE--PSEGKIKHSG----------RISFCSQNSWIMPG-TIKE 117 (290)
T ss_dssp CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSC--EEEEEEECCS----------CEEEECSSCCCCSS-BHHH
T ss_pred ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCcEEEECC----------EEEEEeCCCccCcc-cHHH
Confidence 358999999999999999999999999999999999876 6799999998 38999999988875 9999
Q ss_pred HHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccc-------cCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Q 001400 922 SLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGAL-------IGLPGINGLSTEQRKRLTIAVELVANPSIVFMDE 994 (1085)
Q Consensus 922 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-------~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDE 994 (1085)
|+. +. .. .. ...+++++.+++.+..+.. .+. .+.+||||||||++|||||+.+|++|||||
T Consensus 118 nl~-~~--~~----~~----~~~~~~~~~~~l~~~l~~~~~~~~~~~~~-~~~~LSgGq~QRv~lAraL~~~p~lllLDE 185 (290)
T 2bbs_A 118 NII-GV--SY----DE----YRYRSVIKACQLEEDISKFAEKDNIVLGE-GGITLSGGQRARISLARAVYKDADLYLLDS 185 (290)
T ss_dssp HHH-TT--CC----CH----HHHHHHHHHTTCHHHHHTSTTGGGCBC-----CCCCHHHHHHHHHHHHHHSCCSEEEEES
T ss_pred Hhh-Cc--cc----ch----HHHHHHHHHhChHHHHHhccccccchhcC-ccCcCCHHHHHHHHHHHHHHCCCCEEEEEC
Confidence 997 32 11 11 1123445555554322211 111 135799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHH-HHHHHCCceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCC
Q 001400 995 PTSGLDARAAAIVMRTV-RNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1085)
Q Consensus 995 PtsgLD~~~~~~i~~~l-~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~ 1055 (1085)
||+|||+.++..+++.+ +++. +|+|||++||+++ ....||++++|++ |++++.|+..
T Consensus 186 Pts~LD~~~~~~i~~~ll~~~~-~~~tviivtHd~~--~~~~~d~i~~l~~-G~i~~~g~~~ 243 (290)
T 2bbs_A 186 PFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKME--HLKKADKILILHE-GSSYFYGTFS 243 (290)
T ss_dssp TTTTCCHHHHHHHHHHCCCCCT-TTSEEEEECCCHH--HHHHSSEEEEEET-TEEEEEECHH
T ss_pred CcccCCHHHHHHHHHHHHHHhh-CCCEEEEEecCHH--HHHcCCEEEEEEC-CeEEEeCCHH
Confidence 99999999999999974 4543 5899999999975 3456999999985 7888888754
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-34 Score=317.09 Aligned_cols=194 Identities=22% Similarity=0.316 Sum_probs=147.2
Q ss_pred eecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCCCceEEEEccCCCCCCCCCHHH
Q 001400 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRE 228 (1085)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E 228 (1085)
++|+|+|+.|++|++++|+|||||||||||++|+|.++|. +|+|.++| .++||+|++.+++. ||+|
T Consensus 52 ~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g----------~i~~v~Q~~~l~~~-tv~e 117 (290)
T 2bbs_A 52 PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS---EGKIKHSG----------RISFCSQNSWIMPG-TIKE 117 (290)
T ss_dssp CSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEE---EEEEECCS----------CEEEECSSCCCCSS-BHHH
T ss_pred eEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECC----------EEEEEeCCCccCcc-cHHH
Confidence 5999999999999999999999999999999999998765 99999998 48999999987774 9999
Q ss_pred HHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCcccccCc
Q 001400 229 TLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGIS 308 (1085)
Q Consensus 229 ~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LS 308 (1085)
|+. +... .. ....+. ++.. .++..++. ++...++.++. .+..||
T Consensus 118 nl~-~~~~----~~-~~~~~~------------------~~~~---------~l~~~l~~--~~~~~~~~~~~-~~~~LS 161 (290)
T 2bbs_A 118 NII-GVSY----DE-YRYRSV------------------IKAC---------QLEEDISK--FAEKDNIVLGE-GGITLS 161 (290)
T ss_dssp HHH-TTCC----CH-HHHHHH------------------HHHT---------TCHHHHHT--STTGGGCBC-----CCCC
T ss_pred Hhh-Cccc----ch-HHHHHH------------------HHHh---------ChHHHHHh--ccccccchhcC-ccCcCC
Confidence 997 3210 00 000000 0000 01112222 22233455553 356899
Q ss_pred hhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHH-HHHHhccCCEEEEEEecChhHHHhhcCeEEEecCCeEE
Q 001400 309 GGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYL-KHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIV 387 (1085)
Q Consensus 309 GGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l-~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~~G~iv 387 (1085)
|||||||+|||||+.+|++|+|||||+|||+.++..+++.+ +++. . +++|+.++|+...+ ..||++++|++|+++
T Consensus 162 gGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~--~-~~tviivtHd~~~~-~~~d~i~~l~~G~i~ 237 (290)
T 2bbs_A 162 GGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM--A-NKTRILVTSKMEHL-KKADKILILHEGSSY 237 (290)
T ss_dssp HHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCT--T-TSEEEEECCCHHHH-HHSSEEEEEETTEEE
T ss_pred HHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhh--C-CCEEEEEecCHHHH-HcCCEEEEEECCeEE
Confidence 99999999999999999999999999999999999999864 4432 2 34566677887776 469999999999999
Q ss_pred EecChhhHH
Q 001400 388 YQGPRVSVL 396 (1085)
Q Consensus 388 ~~G~~~~~~ 396 (1085)
+.|+++++.
T Consensus 238 ~~g~~~~l~ 246 (290)
T 2bbs_A 238 FYGTFSELQ 246 (290)
T ss_dssp EEECHHHHH
T ss_pred EeCCHHHHh
Confidence 999998874
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-32 Score=362.78 Aligned_cols=211 Identities=22% Similarity=0.370 Sum_probs=168.2
Q ss_pred ceeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCC---CceEEEEccCCCCCCC
Q 001400 147 KLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP---PRTSAYVSQQDWQVAE 223 (1085)
Q Consensus 147 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~ 223 (1085)
+.++|+|+|++|+|||+++|+||||||||||+++|+|+++|. +|+|.++|+++..... ++.++||+|++.++ +
T Consensus 1045 ~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~-~ 1120 (1284)
T 3g5u_A 1045 SIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPM---AGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILF-D 1120 (1284)
T ss_dssp GCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCS---EEEEESSSSCTTSSCHHHHTTSCEEEESSCCCC-S
T ss_pred CCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC---CCEEEECCEEcccCCHHHHHhceEEECCCCccc-c
Confidence 346999999999999999999999999999999999999886 9999999999876542 56799999999765 5
Q ss_pred CCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCcc
Q 001400 224 MTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEM 303 (1085)
Q Consensus 224 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 303 (1085)
.||+|||.++..... ...+.+.+.++. .+ ++.. .-.+++..||.||+.
T Consensus 1121 ~ti~eNi~~~~~~~~--~~~~~i~~~~~~---~~------------------------~~~~--i~~l~~gldt~vge~- 1168 (1284)
T 3g5u_A 1121 CSIAENIAYGDNSRV--VSYEEIVRAAKE---AN------------------------IHQF--IDSLPDKYNTRVGDK- 1168 (1284)
T ss_dssp SBHHHHHTCCCSSCC--CCHHHHHHHHHH---HT------------------------CHHH--HSSTTTGGGCBCSTT-
T ss_pred ccHHHHHhccCCCCC--CCHHHHHHHHHH---hC------------------------cHHH--HHhCccccccccCCC-
Confidence 799999987532111 011111111100 00 1111 224677889999964
Q ss_pred cccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEecC
Q 001400 304 LKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSE 383 (1085)
Q Consensus 304 ~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~~ 383 (1085)
+.+|||||||||+|||||+.+|+||+|||||+|||+.+...|.+.|++.. ++.+++.++|..+.+ ..||+|++|++
T Consensus 1169 G~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~---~~~tvi~isH~l~~i-~~~dri~vl~~ 1244 (1284)
T 3g5u_A 1169 GTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAR---EGRTCIVIAHRLSTI-QNADLIVVIQN 1244 (1284)
T ss_dssp SCSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHS---SSSCEEEECSCTTGG-GSCSEEEEEET
T ss_pred CCccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhC---CCCEEEEEecCHHHH-HcCCEEEEEEC
Confidence 55799999999999999999999999999999999999999999998753 244555688888877 55999999999
Q ss_pred CeEEEecChhhHHH
Q 001400 384 GQIVYQGPRVSVLD 397 (1085)
Q Consensus 384 G~iv~~G~~~~~~~ 397 (1085)
|+++++|+++++++
T Consensus 1245 G~i~~~g~~~~l~~ 1258 (1284)
T 3g5u_A 1245 GKVKEHGTHQQLLA 1258 (1284)
T ss_dssp BEEEEEECHHHHHH
T ss_pred CEEEEECCHHHHHh
Confidence 99999999999874
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-30 Score=316.55 Aligned_cols=191 Identities=24% Similarity=0.282 Sum_probs=160.3
Q ss_pred ecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCCCceEEEEccCCCCCCCCCHHHH
Q 001400 150 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRET 229 (1085)
Q Consensus 150 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~ 229 (1085)
.|+++|+.+++||+++|+|||||||||||++|+|.++|. +|+|.+ .+.++|++|+....+.+||.|+
T Consensus 371 ~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~---~G~I~~----------~~~i~~v~Q~~~~~~~~tv~e~ 437 (607)
T 3bk7_A 371 KLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPT---EGKVEW----------DLTVAYKPQYIKAEYEGTVYEL 437 (607)
T ss_dssp EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCS---BSCCCC----------CCCEEEECSSCCCCCSSBHHHH
T ss_pred EEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEE----------eeEEEEEecCccCCCCCcHHHH
Confidence 467777889999999999999999999999999999876 899875 2469999999877788999998
Q ss_pred HHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCcccccCch
Q 001400 230 LDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISG 309 (1085)
Q Consensus 230 l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSG 309 (1085)
+.+..... + . ...+++++++.+||.+.++..+ ..|||
T Consensus 438 ~~~~~~~~-----~--------~-------------------------~~~~~~~~l~~~~l~~~~~~~~-----~~LSG 474 (607)
T 3bk7_A 438 LSKIDSSK-----L--------N-------------------------SNFYKTELLKPLGIIDLYDRNV-----EDLSG 474 (607)
T ss_dssp HHHHHHHH-----H--------H-------------------------CHHHHHHTHHHHTCTTTTTSBG-----GGCCH
T ss_pred HHhhhccC-----C--------C-------------------------HHHHHHHHHHHcCCchHhcCCh-----hhCCH
Confidence 86521000 0 0 0123677899999988777665 46999
Q ss_pred hhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEecC--CeEE
Q 001400 310 GQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSE--GQIV 387 (1085)
Q Consensus 310 GqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~~--G~iv 387 (1085)
||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++++..+ .+|+.++|+..++..++|+|++|++ |+++
T Consensus 475 Ge~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g-~tvi~vsHd~~~~~~~adrv~vl~~~~g~~~ 553 (607)
T 3bk7_A 475 GELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNE-KTALVVEHDVLMIDYVSDRLIVFEGEPGRHG 553 (607)
T ss_dssp HHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTT-CEEEEECSCHHHHHHHCSEEEEEEEETTTEE
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCC-CEEEEEeCCHHHHHHhCCEEEEEcCCcceEE
Confidence 999999999999999999999999999999999999999999875434 4566688999999999999999986 8889
Q ss_pred EecChhhHHH
Q 001400 388 YQGPRVSVLD 397 (1085)
Q Consensus 388 ~~G~~~~~~~ 397 (1085)
..|+++++..
T Consensus 554 ~~g~p~~~~~ 563 (607)
T 3bk7_A 554 RALPPMGMRE 563 (607)
T ss_dssp EECCCEEHHH
T ss_pred ecCCHHHHHh
Confidence 9999988765
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.6e-30 Score=312.83 Aligned_cols=191 Identities=24% Similarity=0.273 Sum_probs=158.7
Q ss_pred ecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCCCceEEEEccCCCCCCCCCHHHH
Q 001400 150 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRET 229 (1085)
Q Consensus 150 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~ 229 (1085)
.|+++|+.|++||+++|+|||||||||||++|+|.++|. +|+|.+ ...++|++|+....+.+||.|+
T Consensus 301 ~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~---~G~i~~----------~~~i~~v~Q~~~~~~~~tv~~~ 367 (538)
T 1yqt_A 301 RLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPT---EGKIEW----------DLTVAYKPQYIKADYEGTVYEL 367 (538)
T ss_dssp EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCS---BCCCCC----------CCCEEEECSSCCCCCSSBHHHH
T ss_pred EEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEE----------CceEEEEecCCcCCCCCcHHHH
Confidence 466777778999999999999999999999999998876 899875 2369999999877788999998
Q ss_pred HHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCcccccCch
Q 001400 230 LDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISG 309 (1085)
Q Consensus 230 l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSG 309 (1085)
+....... + . ....++.+++.+||.+..+..+ ..|||
T Consensus 368 ~~~~~~~~-----~----------------~-----------------~~~~~~~~l~~~~l~~~~~~~~-----~~LSG 404 (538)
T 1yqt_A 368 LSKIDASK-----L----------------N-----------------SNFYKTELLKPLGIIDLYDREV-----NELSG 404 (538)
T ss_dssp HHHHHHHH-----H----------------T-----------------CHHHHHHTTTTTTCGGGTTSBG-----GGCCH
T ss_pred HHhhhccC-----C----------------C-----------------HHHHHHHHHHHcCChhhhcCCh-----hhCCH
Confidence 75421000 0 0 0123677888999987776655 46999
Q ss_pred hhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEecC--CeEE
Q 001400 310 GQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSE--GQIV 387 (1085)
Q Consensus 310 GqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~~--G~iv 387 (1085)
||||||+||++|+.+|++|+|||||+|||..++..|.+.|+++++..+ .+|+.++|+.+++..+||+|++|++ |+++
T Consensus 405 Ge~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g-~tvi~vsHd~~~~~~~~drv~vl~~~~~~~~ 483 (538)
T 1yqt_A 405 GELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNE-KTALVVEHDVLMIDYVSDRLMVFEGEPGKYG 483 (538)
T ss_dssp HHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHT-CEEEEECSCHHHHHHHCSEEEEEEEETTTEE
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCC-CEEEEEeCCHHHHHHhCCEEEEEeCCcceEe
Confidence 999999999999999999999999999999999999999999875434 4566688999999999999999986 8899
Q ss_pred EecChhhHHH
Q 001400 388 YQGPRVSVLD 397 (1085)
Q Consensus 388 ~~G~~~~~~~ 397 (1085)
..|+++++..
T Consensus 484 ~~g~~~~~~~ 493 (538)
T 1yqt_A 484 RALPPMGMRE 493 (538)
T ss_dssp EECCCEEHHH
T ss_pred ecCCHHHHHh
Confidence 9999988765
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.9e-30 Score=309.64 Aligned_cols=192 Identities=22% Similarity=0.256 Sum_probs=158.3
Q ss_pred ecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCCCceEEEEccCCCCCCCCCHHHH
Q 001400 150 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRET 229 (1085)
Q Consensus 150 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~ 229 (1085)
.|+++|+.|++||+++|+|||||||||||++|+|.++|+ +|+|.++| +.++|++|+......+||+||
T Consensus 283 ~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~~---------~~i~~~~q~~~~~~~~tv~~~ 350 (538)
T 3ozx_A 283 QLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITAD---EGSVTPEK---------QILSYKPQRIFPNYDGTVQQY 350 (538)
T ss_dssp EEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCS---BCCEESSC---------CCEEEECSSCCCCCSSBHHHH
T ss_pred EEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECC---------eeeEeechhcccccCCCHHHH
Confidence 456667789999999999999999999999999999886 99998775 358999999776678999999
Q ss_pred HHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCcccccCch
Q 001400 230 LDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISG 309 (1085)
Q Consensus 230 l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSG 309 (1085)
+.+..... . . .....++++++.+||.+..+..+ ..|||
T Consensus 351 l~~~~~~~--~------------------~-----------------~~~~~~~~~l~~~~l~~~~~~~~-----~~LSG 388 (538)
T 3ozx_A 351 LENASKDA--L------------------S-----------------TSSWFFEEVTKRLNLHRLLESNV-----NDLSG 388 (538)
T ss_dssp HHHHCSST--T------------------C-----------------TTSHHHHHTTTTTTGGGCTTSBG-----GGCCH
T ss_pred HHHhhhhc--c------------------c-----------------hhHHHHHHHHHHcCCHHHhcCCh-----hhCCH
Confidence 97632100 0 0 00123667788899988777655 46999
Q ss_pred hhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEecC--CeEE
Q 001400 310 GQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSE--GQIV 387 (1085)
Q Consensus 310 GqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~~--G~iv 387 (1085)
||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++++.. +++|+.++|+.+++..+||+|++|++ |...
T Consensus 389 Gq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~-g~tvi~vsHdl~~~~~~aDri~vl~~~~~~~~ 467 (538)
T 3ozx_A 389 GELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRER-KAVTFIIDHDLSIHDYIADRIIVFKGEPEKAG 467 (538)
T ss_dssp HHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHT-TCEEEEECSCHHHHHHHCSEEEEEEEETTTEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEEeCCcceec
Confidence 99999999999999999999999999999999999999999997654 45566689999999999999999986 6677
Q ss_pred EecChhhHH
Q 001400 388 YQGPRVSVL 396 (1085)
Q Consensus 388 ~~G~~~~~~ 396 (1085)
..+++.++.
T Consensus 468 ~~~~~~~~~ 476 (538)
T 3ozx_A 468 LATSPVTLK 476 (538)
T ss_dssp EECCCEEHH
T ss_pred cCCChHHHH
Confidence 777766554
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=6.5e-32 Score=326.20 Aligned_cols=154 Identities=18% Similarity=0.178 Sum_probs=113.5
Q ss_pred eEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCChhcccceEEEEccCCCCCCCCCHHHHHHHhhh
Q 001400 849 TGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLESLLFSAW 928 (1085)
Q Consensus 849 s~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gy~~Q~~~~~~~~tv~e~l~~~~~ 928 (1085)
++.+++|++++|+|+||||||||++.++|.... .|+ +.+.|++|++. .++.++..
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~---~G~--------------~vi~~~~ee~~----~~l~~~~~---- 329 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACA---NKE--------------RAILFAYEESR----AQLLRNAY---- 329 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHT---TTC--------------CEEEEESSSCH----HHHHHHHH----
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHh---CCC--------------CEEEEEEeCCH----HHHHHHHH----
Confidence 448999999999999999999999999985431 132 12455666531 12223221
Q ss_pred hcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHH-----H
Q 001400 929 LRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDAR-----A 1003 (1085)
Q Consensus 929 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEPtsgLD~~-----~ 1003 (1085)
+.. .. +++ +...++..+.+.. +..||+||+||+++|+++..+|++|++| ||++||.. .
T Consensus 330 -~~g--~~-------~~~-~~~~g~~~~~~~~-----p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~ 392 (525)
T 1tf7_A 330 -SWG--MD-------FEE-MERQNLLKIVCAY-----PESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAF 392 (525)
T ss_dssp -TTS--CC-------HHH-HHHTTSEEECCCC-----GGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHH
T ss_pred -HcC--CC-------HHH-HHhCCCEEEEEec-----cccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHH
Confidence 111 11 112 2234554444432 2479999999999999999999999999 99999999 9
Q ss_pred HHHHHHHHHHHHHCCceEEEEecCc----------cHHHHHhcCEEEEEecC
Q 001400 1004 AAIVMRTVRNIVNTGRTIVCTIHQP----------SIDIFESFDELLFMKRG 1045 (1085)
Q Consensus 1004 ~~~i~~~l~~~~~~g~tvi~~~H~~----------~~~~~~~~d~il~l~~g 1045 (1085)
+..+.++++.+++.|.|||+|+|+. . .+...+|++++|.+|
T Consensus 393 ~~~i~~ll~~l~~~g~tvilvsh~~~~~~~~~~~~~-~l~~~~D~vi~L~~g 443 (525)
T 1tf7_A 393 RQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDS-HISTITDTIILLQYV 443 (525)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSS-CCTTTCSEEEEEEEE
T ss_pred HHHHHHHHHHHHhCCCEEEEEECcccccCcccccCc-ccceeeeEEEEEEEE
Confidence 9999999999988899999999997 3 355678999999864
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-29 Score=307.42 Aligned_cols=192 Identities=23% Similarity=0.197 Sum_probs=159.3
Q ss_pred eecccceeeEeCC-----eEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCCCceEEEEccCCCCCCC
Q 001400 149 TILDDLSGIIRPS-----RLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAE 223 (1085)
Q Consensus 149 ~iL~~vs~~i~~G-----~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~~~~~~yv~Q~d~~~~~ 223 (1085)
.+++|+|+.+++| |+++|+|||||||||||++|+|.++|+ +|+. + ....++|++|+......
T Consensus 361 ~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~---~G~~------~----~~~~i~~~~q~~~~~~~ 427 (608)
T 3j16_B 361 KTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPD---EGQD------I----PKLNVSMKPQKIAPKFP 427 (608)
T ss_dssp EECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCS---BCCC------C----CSCCEEEECSSCCCCCC
T ss_pred cccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCC---CCcC------c----cCCcEEEecccccccCC
Confidence 5789999999999 779999999999999999999999886 7752 1 23468999999766667
Q ss_pred CCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCcc
Q 001400 224 MTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEM 303 (1085)
Q Consensus 224 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 303 (1085)
.||+|++.... .+.. .....++.+++.+||.+.++..+
T Consensus 428 ~tv~e~~~~~~--~~~~------------------------------------~~~~~~~~~l~~l~l~~~~~~~~---- 465 (608)
T 3j16_B 428 GTVRQLFFKKI--RGQF------------------------------------LNPQFQTDVVKPLRIDDIIDQEV---- 465 (608)
T ss_dssp SBHHHHHHHHC--SSTT------------------------------------TSHHHHHHTHHHHTSTTTSSSBS----
T ss_pred ccHHHHHHHHh--hccc------------------------------------ccHHHHHHHHHHcCChhhhcCCh----
Confidence 89999875321 1000 00123567889999988777665
Q ss_pred cccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEecC
Q 001400 304 LKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSE 383 (1085)
Q Consensus 304 ~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~~ 383 (1085)
..|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++++..+ .+|+.++|+.+++..++|+|++|++
T Consensus 466 -~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g-~tviivtHdl~~~~~~aDrvivl~~ 543 (608)
T 3j16_B 466 -QHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNK-KTAFIVEHDFIMATYLADKVIVFEG 543 (608)
T ss_dssp -SSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHT-CEEEEECSCHHHHHHHCSEEEECEE
T ss_pred -hhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCC-CEEEEEeCCHHHHHHhCCEEEEEeC
Confidence 46999999999999999999999999999999999999999999999865444 4566689999999999999999986
Q ss_pred --CeEEEecChhhHHH
Q 001400 384 --GQIVYQGPRVSVLD 397 (1085)
Q Consensus 384 --G~iv~~G~~~~~~~ 397 (1085)
|+++..|++++++.
T Consensus 544 ~~g~~~~~g~p~~~~~ 559 (608)
T 3j16_B 544 IPSKNAHARAPESLLT 559 (608)
T ss_dssp ETTTEEECCCCEEHHH
T ss_pred CCCeEEecCChHHHhh
Confidence 99999999998875
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=99.96 E-value=3.7e-29 Score=312.79 Aligned_cols=183 Identities=21% Similarity=0.290 Sum_probs=149.3
Q ss_pred cCCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCChhcccceEEEEccCC-CCCCCC
Q 001400 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQND-IHSPGL 917 (1085)
Q Consensus 839 ~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gy~~Q~~-~~~~~~ 917 (1085)
++++.+|+|+||+|++|+++||+||||||||||+++|+| |.| +|.+... ...++|++|+. ..++.+
T Consensus 445 yg~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag--------G~i--~g~~~~~---~~~~~~v~q~~~~~~~~l 511 (986)
T 2iw3_A 445 YGAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN--------GQV--DGFPTQE---ECRTVYVEHDIDGTHSDT 511 (986)
T ss_dssp ETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH--------TCS--TTCCCTT---TSCEEETTCCCCCCCTTS
T ss_pred ECCEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC--------CCc--CCCcccc---ceeEEEEcccccccccCC
Confidence 356789999999999999999999999999999999995 222 4443221 12368999874 567889
Q ss_pred CHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCC-cccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Q 001400 918 TVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELT-SLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPT 996 (1085)
Q Consensus 918 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEPt 996 (1085)
||.|++.+ ... .. .+.++++++.+++. +..+..+ .+||||||||++|||||+.+|+||||||||
T Consensus 512 tv~e~l~~--~~~---~~-----~~~v~~~L~~lgL~~~~~~~~~-----~~LSGGqkQRvaLArAL~~~P~lLLLDEPT 576 (986)
T 2iw3_A 512 SVLDFVFE--SGV---GT-----KEAIKDKLIEFGFTDEMIAMPI-----SALSGGWKMKLALARAVLRNADILLLDEPT 576 (986)
T ss_dssp BHHHHHHT--TCS---SC-----HHHHHHHHHHTTCCHHHHHSBG-----GGCCHHHHHHHHHHHHHHTTCSEEEEESTT
T ss_pred cHHHHHHH--hhc---CH-----HHHHHHHHHHcCCChhhhcCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEECCc
Confidence 99999975 111 11 34578899999994 4555544 479999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEecCcEEE-EecCC
Q 001400 997 SGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELI-YAGPL 1054 (1085)
Q Consensus 997 sgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~-~~g~~ 1054 (1085)
+|||+.++..+++.|++ .|.|||++|||++ .+...||++++|++ |+++ +.|+.
T Consensus 577 s~LD~~~~~~l~~~L~~---~g~tvIivSHdl~-~l~~~adrii~L~~-G~iv~~~G~~ 630 (986)
T 2iw3_A 577 NHLDTVNVAWLVNYLNT---CGITSITISHDSV-FLDNVCEYIINYEG-LKLRKYKGNF 630 (986)
T ss_dssp TTCCHHHHHHHHHHHHH---SCSEEEEECSCHH-HHHHHCSEEEEEET-TEEEEEESCH
T ss_pred cCCCHHHHHHHHHHHHh---CCCEEEEEECCHH-HHHHhCCEEEEEEC-CeeecCCCCH
Confidence 99999999999999998 5899999999986 47788999999985 6765 67765
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.3e-29 Score=312.71 Aligned_cols=206 Identities=23% Similarity=0.310 Sum_probs=132.5
Q ss_pred eEEeeeeeEEEeCCeEEEEEccCCCChhHHH---------------------hhhhCCCCCC--ee---eeEEEEcCccC
Q 001400 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLM---------------------DVLAGRKTGG--II---EGDIYISGYPK 895 (1085)
Q Consensus 842 ~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl---------------------~~l~g~~~~~--~~---~G~i~i~g~~~ 895 (1085)
..+|+||||+|++||++||+||||||||||+ +++.|...++ .+ .|.|.++|.+.
T Consensus 31 ~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~~ 110 (670)
T 3ux8_A 31 AHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKTT 110 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC-
T ss_pred ccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCchh
Confidence 4579999999999999999999999999997 5666643321 11 45677777654
Q ss_pred ChhcccceEEEEccCCC-------------------CCCCCCHHHHHHHhhhhcCCCcccHHHHH------HHHHHHHHH
Q 001400 896 RQETFARISGYCEQNDI-------------------HSPGLTVLESLLFSAWLRLPSEIELETQR------AFVEEVMEL 950 (1085)
Q Consensus 896 ~~~~~~~~~gy~~Q~~~-------------------~~~~~tv~e~l~~~~~~~~~~~~~~~~~~------~~~~~~l~~ 950 (1085)
... .++.+||++|... .++.+||+||+.+...+..... ...... ....++++.
T Consensus 111 ~~~-~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~ 188 (670)
T 3ux8_A 111 SRN-PRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEK-EAQIARLILREIRDRLGFLQN 188 (670)
T ss_dssp -----CCBHHHHTTCC-------------------------CC---------------------------CHHHHHHHHH
T ss_pred hcc-chhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchh-hhHHHHHHHHHHHHHHHHHHH
Confidence 321 1233444444322 2357899999987432211110 000000 011235777
Q ss_pred cCCCcc-cccccCCCCCCCCCHHHHHHHHHHHHHhcCCC--EEEEeCCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecC
Q 001400 951 VELTSL-SGALIGLPGINGLSTEQRKRLTIAVELVANPS--IVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQ 1027 (1085)
Q Consensus 951 ~~l~~~-~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~--illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~ 1027 (1085)
+++.+. .+... .+|||||||||+|||||+.+|+ ||||||||+|||+.++..+++.|+++.++|.|||+||||
T Consensus 189 ~gL~~~~~~~~~-----~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd 263 (670)
T 3ux8_A 189 VGLDYLTLSRSA-----GTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHD 263 (670)
T ss_dssp TTCTTCCTTCBG-----GGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred cCCchhhhcCCc-----ccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 888654 34433 4799999999999999999998 999999999999999999999999998889999999999
Q ss_pred ccHHHHHhcCEEEEEe-----cCcEEEEecCCCC
Q 001400 1028 PSIDIFESFDELLFMK-----RGGELIYAGPLGS 1056 (1085)
Q Consensus 1028 ~~~~~~~~~d~il~l~-----~gG~~~~~g~~~~ 1056 (1085)
++ ....||++++|. ++|++++.|+..+
T Consensus 264 ~~--~~~~~d~ii~l~~g~~~~~G~i~~~g~~~~ 295 (670)
T 3ux8_A 264 ED--TMLAADYLIDIGPGAGIHGGEVVAAGTPEE 295 (670)
T ss_dssp HH--HHHHCSEEEEECSSSGGGCCSEEEEECHHH
T ss_pred HH--HHhhCCEEEEecccccccCCEEEEecCHHH
Confidence 75 456799999993 3578999997643
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.93 E-value=7.2e-25 Score=274.36 Aligned_cols=109 Identities=21% Similarity=0.278 Sum_probs=91.9
Q ss_pred HHHHHHHHhCCcccccccccCcccccCchhhhhHHHHHHHHhCCC---cEeEEeCCCCCCCHHHHHHHHHHHHHHHhccC
Q 001400 281 VVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPA---RVLFMDEISNGLDSSTTYQIIKYLKHSTRALD 357 (1085)
Q Consensus 281 ~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqkqRvsia~al~~~p---~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~ 357 (1085)
++.++|+.+||... .+| +...+|||||||||+|||+|+.+| ++|+|||||+|||+.+...+++.|++++.. +
T Consensus 784 ~~~~~L~~vGL~~~---~lg-q~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~-G 858 (916)
T 3pih_A 784 RTLQVLHDVGLGYV---KLG-QPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDR-G 858 (916)
T ss_dssp HHHHHHHHTTGGGS---BTT-CCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHT-T
T ss_pred HHHHHHHHcCCchh---hcc-CCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhc-C
Confidence 46788999999652 122 345679999999999999999865 799999999999999999999999998753 4
Q ss_pred CEEEEEEecChhHHHhhcCeEEEe------cCCeEEEecChhhHH
Q 001400 358 GTTVISLLQPAPEAYELFDDVILL------SEGQIVYQGPRVSVL 396 (1085)
Q Consensus 358 ~t~ii~~~q~~~~~~~~~D~ii~L------~~G~iv~~G~~~~~~ 396 (1085)
. +||.+.|+.+.+ ..+|+|++| ++|+|++.|+++++.
T Consensus 859 ~-TVIvI~HdL~~i-~~ADrIivLgp~gg~~~G~Iv~~Gtpeel~ 901 (916)
T 3pih_A 859 N-TVIVIEHNLDVI-KNADHIIDLGPEGGKEGGYIVATGTPEEIA 901 (916)
T ss_dssp C-EEEEECCCHHHH-TTCSEEEEEESSSGGGCCEEEEEESHHHHH
T ss_pred C-EEEEEeCCHHHH-HhCCEEEEecCCCCCCCCEEEEEcCHHHHH
Confidence 4 556688888776 459999999 899999999999986
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=99.92 E-value=2.7e-25 Score=275.41 Aligned_cols=107 Identities=22% Similarity=0.255 Sum_probs=91.8
Q ss_pred HHHHHHHhCCcc-cccccccCcccccCchhhhhHHHHHHHHhCCC---cEeEEeCCCCCCCHHHHHHHHHHHHHHHhccC
Q 001400 282 VEYIMKILGLDT-CADTLVGDEMLKGISGGQKKRLTTGELLVGPA---RVLFMDEISNGLDSSTTYQIIKYLKHSTRALD 357 (1085)
Q Consensus 282 ~~~~l~~lgL~~-~~dt~vg~~~~~~LSGGqkqRvsia~al~~~p---~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~ 357 (1085)
+.++|+.+||.. ..+.. +..|||||||||+||++|+.+| ++|+|||||+|||+.+...+++.|++++..
T Consensus 825 ~~~~L~~~gL~~~~l~~~-----~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~-- 897 (972)
T 2r6f_A 825 KLETLYDVGLGYMKLGQP-----ATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDN-- 897 (972)
T ss_dssp HHHHHHHTTCSSSBTTCC-----GGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHT--
T ss_pred HHHHHHHcCCCcccccCc-----hhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC--
Confidence 567899999976 44544 4579999999999999999764 999999999999999999999999998753
Q ss_pred CEEEEEEecChhHHHhhcCeEEEe------cCCeEEEecChhhHH
Q 001400 358 GTTVISLLQPAPEAYELFDDVILL------SEGQIVYQGPRVSVL 396 (1085)
Q Consensus 358 ~t~ii~~~q~~~~~~~~~D~ii~L------~~G~iv~~G~~~~~~ 396 (1085)
+.+|+.++|+.+++ ..+|+|++| ++|++++.|+++++.
T Consensus 898 G~TVIvisHdl~~i-~~aDrIivL~p~gG~~~G~Iv~~g~~~el~ 941 (972)
T 2r6f_A 898 GDTVLVIEHNLDVI-KTADYIIDLGPEGGDRGGQIVAVGTPEEVA 941 (972)
T ss_dssp TCEEEEECCCHHHH-TTCSEEEEECSSSTTSCCSEEEEESHHHHH
T ss_pred CCEEEEEcCCHHHH-HhCCEEEEEcCCCCCCCCEEEEecCHHHHH
Confidence 45566688888876 689999999 789999999998875
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=6.5e-25 Score=272.64 Aligned_cols=108 Identities=23% Similarity=0.290 Sum_probs=93.8
Q ss_pred HHHHHHHHhCCccc-ccccccCcccccCchhhhhHHHHHHHHhCC---CcEeEEeCCCCCCCHHHHHHHHHHHHHHHhcc
Q 001400 281 VVEYIMKILGLDTC-ADTLVGDEMLKGISGGQKKRLTTGELLVGP---ARVLFMDEISNGLDSSTTYQIIKYLKHSTRAL 356 (1085)
Q Consensus 281 ~~~~~l~~lgL~~~-~dt~vg~~~~~~LSGGqkqRvsia~al~~~---p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~ 356 (1085)
+++++|+.+||... .+. .+..|||||||||+||++|+.+ |++|+|||||+|||..+...|.+.|++++..
T Consensus 709 ~~~~~L~~~gL~~~~l~~-----~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~- 782 (842)
T 2vf7_A 709 RALDTLREVGLGYLRLGQ-----PATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDA- 782 (842)
T ss_dssp HHHHHHHHTTCTTSBTTC-----CGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHcCCCcccccC-----CcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC-
Confidence 47889999999763 343 3457999999999999999996 7999999999999999999999999998753
Q ss_pred CCEEEEEEecChhHHHhhcCeEEEe------cCCeEEEecChhhHH
Q 001400 357 DGTTVISLLQPAPEAYELFDDVILL------SEGQIVYQGPRVSVL 396 (1085)
Q Consensus 357 ~~t~ii~~~q~~~~~~~~~D~ii~L------~~G~iv~~G~~~~~~ 396 (1085)
+.+|+.++|+.+++ ..||+|++| ++|++++.|+++++.
T Consensus 783 -G~tVIvisHdl~~i-~~aDrii~L~p~~g~~~G~Iv~~g~~~el~ 826 (842)
T 2vf7_A 783 -GNTVIAVEHKMQVV-AASDWVLDIGPGAGEDGGRLVAQGTPAEVA 826 (842)
T ss_dssp -TCEEEEECCCHHHH-TTCSEEEEECSSSGGGCCSEEEEECHHHHT
T ss_pred -CCEEEEEcCCHHHH-HhCCEEEEECCCCCCCCCEEEEEcCHHHHH
Confidence 45566688999888 889999999 799999999998874
|
| >4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.91 E-value=9.5e-25 Score=256.59 Aligned_cols=204 Identities=18% Similarity=0.162 Sum_probs=139.1
Q ss_pred eEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCC------------------------------------Ceee
Q 001400 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTG------------------------------------GIIE 885 (1085)
Q Consensus 842 ~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~------------------------------------~~~~ 885 (1085)
..+++++|+++.+| +++|+|+|||||||||++|.+...+ ....
T Consensus 48 f~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~ 126 (415)
T 4aby_A 48 LATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGR 126 (415)
T ss_dssp ETTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSC
T ss_pred ccceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCc
Confidence 34688999999999 9999999999999999999653221 0125
Q ss_pred eEEEEcCccCChh---cc-cceEEEEccCCCCCCCCCHHHHHHHhhhhc-----------------------CCCcc---
Q 001400 886 GDIYISGYPKRQE---TF-ARISGYCEQNDIHSPGLTVLESLLFSAWLR-----------------------LPSEI--- 935 (1085)
Q Consensus 886 G~i~i~g~~~~~~---~~-~~~~gy~~Q~~~~~~~~tv~e~l~~~~~~~-----------------------~~~~~--- 935 (1085)
|.+.+||.+.+.. .+ ...+++++|++.++.. +..+...|.-+.. .....
T Consensus 127 ~~i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~-~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~ 205 (415)
T 4aby_A 127 GAARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLL-SPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERLQASESSK 205 (415)
T ss_dssp EEEEETTEEECHHHHHHHHTTTEEEETTTCTTTTS-SHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred eEEEECCEECCHHHHHHHHhhceEEecCccccccc-CHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 7899999987642 22 3348999998776543 4444333211100 00000
Q ss_pred -------------------------------cHHHHHHHHHHHHHHcCCCccc----------------cc---ccCCC-
Q 001400 936 -------------------------------ELETQRAFVEEVMELVELTSLS----------------GA---LIGLP- 964 (1085)
Q Consensus 936 -------------------------------~~~~~~~~~~~~l~~~~l~~~~----------------~~---~~~~~- 964 (1085)
........+.+.++.+++.... +. .....
T Consensus 206 ~~~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 285 (415)
T 4aby_A 206 HPTSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSANP 285 (415)
T ss_dssp ----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESSS
T ss_pred cCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcCC
Confidence 0000112334445555443210 00 01000
Q ss_pred -----CCCC-CCHHHHHHHHHHHHHhcCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhc
Q 001400 965 -----GING-LSTEQRKRLTIAVELVANP--SIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESF 1036 (1085)
Q Consensus 965 -----~~~~-LS~Gqrqrl~iA~aL~~~p--~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~ 1036 (1085)
.... ||||||||++||++|+.+| ++|||||||+|||+.++..+.+.|+++. +|+|||+|||+++ +...|
T Consensus 286 ~~~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~-~~~~vi~itH~~~--~~~~~ 362 (415)
T 4aby_A 286 GEELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA-DTRQVLVVTHLAQ--IAARA 362 (415)
T ss_dssp SCCCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSCHH--HHTTC
T ss_pred CCcccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEeCcHH--HHhhc
Confidence 0111 7999999999999999999 9999999999999999999999999987 6999999999974 56789
Q ss_pred CEEEEE----ecCcEEEEe
Q 001400 1037 DELLFM----KRGGELIYA 1051 (1085)
Q Consensus 1037 d~il~l----~~gG~~~~~ 1051 (1085)
|++++| .+ |+++..
T Consensus 363 d~i~~l~k~~~~-G~~~~~ 380 (415)
T 4aby_A 363 HHHYKVEKQVED-GRTVSH 380 (415)
T ss_dssp SEEEEEEEEEET-TEEEEE
T ss_pred CeEEEEEEeccC-CceEEE
Confidence 999999 75 566544
|
| >2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.91 E-value=8.8e-27 Score=273.93 Aligned_cols=184 Identities=13% Similarity=0.060 Sum_probs=141.1
Q ss_pred cceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceee-E-EEECCccCCCCCCCceEEEEccCCC---CCCCCCHH
Q 001400 153 DLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSG-K-ITYNGHGFKEFVPPRTSAYVSQQDW---QVAEMTVR 227 (1085)
Q Consensus 153 ~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G-~-i~~~G~~~~~~~~~~~~~yv~Q~d~---~~~~lTV~ 227 (1085)
++|+.+++|++++|+||||||||||+|+|+|.+.+. +| + |.++|. +++.++|++|+.. +...+||+
T Consensus 130 ~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~---~G~~pI~vdg~------~~~~i~~vpq~~~l~~~~~~~tv~ 200 (460)
T 2npi_A 130 KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKF---NAYQPLYINLD------PQQPIFTVPGCISATPISDILDAQ 200 (460)
T ss_dssp HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHH---HCCCCEEEECC------TTSCSSSCSSCCEEEECCSCCCTT
T ss_pred cCceEeCCCCEEEEECCCCCCHHHHHHHHhCccccc---CCceeEEEcCC------ccCCeeeeccchhhcccccccchh
Confidence 799999999999999999999999999999998664 89 8 999982 3567899999874 45568999
Q ss_pred HHHHHhhhh-cCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCccccc
Q 001400 228 ETLDFAGQC-QGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKG 306 (1085)
Q Consensus 228 E~l~f~~~~-~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 306 (1085)
||+ |+... .+... ..++..+++.+||++..+ ...
T Consensus 201 eni-~~~~~~~~~~~-------------------------------------~~~~~~ll~~~gl~~~~~-------~~~ 235 (460)
T 2npi_A 201 LPT-WGQSLTSGATL-------------------------------------LHNKQPMVKNFGLERINE-------NKD 235 (460)
T ss_dssp CTT-CSCBCBSSCCS-------------------------------------SCCBCCEECCCCSSSGGG-------CHH
T ss_pred hhh-cccccccCcch-------------------------------------HHHHHHHHHHhCCCcccc-------hhh
Confidence 998 75432 11000 001223455678876554 347
Q ss_pred CchhhhhHHHHHHH--HhCCCcE----eEEeC-CCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChh-----HHHhh
Q 001400 307 ISGGQKKRLTTGEL--LVGPARV----LFMDE-ISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAP-----EAYEL 374 (1085)
Q Consensus 307 LSGGqkqRvsia~a--l~~~p~v----lllDE-ptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~-----~~~~~ 374 (1085)
|||||||||+||++ |+.+|++ |+||| ||++||.. ...|.+.+++ .+.++|+++|++.+ ++..+
T Consensus 236 LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~~~----~~~tviiVth~~~~~l~~~~~~~~ 310 (460)
T 2npi_A 236 LYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDEN-LAELHHIIEK----LNVNIMLVLCSETDPLWEKVKKTF 310 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGSCSS-CHHHHHHHHH----TTCCEEEEECCSSCTHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhccCcccCcceEEEeCCcccccChh-HHHHHHHHHH----hCCCEEEEEccCchhhhHHHHHHh
Confidence 99999999999999 9999999 99999 99999999 5555555543 34565554444331 66789
Q ss_pred cCe-----EEEec-CCeEEEecChhhHH
Q 001400 375 FDD-----VILLS-EGQIVYQGPRVSVL 396 (1085)
Q Consensus 375 ~D~-----ii~L~-~G~iv~~G~~~~~~ 396 (1085)
+|+ |++|+ +|+++ .|+++++.
T Consensus 311 ~dr~~~~~vi~l~k~G~iv-~g~~~~~~ 337 (460)
T 2npi_A 311 GPELGNNNIFFIPKLDGVS-AVDDVYKR 337 (460)
T ss_dssp HHHHCGGGEEEECCCTTCC-CCCHHHHH
T ss_pred cccccCCEEEEEeCCCcEE-ECCHHHHh
Confidence 999 99999 99999 99887653
|
| >2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.5e-27 Score=278.50 Aligned_cols=196 Identities=17% Similarity=0.090 Sum_probs=147.2
Q ss_pred eeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeee-E-EEEcCccCChhcccceEEEEccCCC---CCCCCCHHH
Q 001400 847 NVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEG-D-IYISGYPKRQETFARISGYCEQNDI---HSPGLTVLE 921 (1085)
Q Consensus 847 ~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G-~-i~i~g~~~~~~~~~~~~gy~~Q~~~---~~~~~tv~e 921 (1085)
++|+++++|++++|+||||||||||+++|+|... +.+| + |.++|. .++.++|++|+.. +.+.+|++|
T Consensus 130 ~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~--p~~G~~pI~vdg~------~~~~i~~vpq~~~l~~~~~~~tv~e 201 (460)
T 2npi_A 130 KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYAL--KFNAYQPLYINLD------PQQPIFTVPGCISATPISDILDAQL 201 (460)
T ss_dssp HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTH--HHHCCCCEEEECC------TTSCSSSCSSCCEEEECCSCCCTTC
T ss_pred cCceEeCCCCEEEEECCCCCCHHHHHHHHhCccc--ccCCceeEEEcCC------ccCCeeeeccchhhcccccccchhh
Confidence 7999999999999999999999999999999865 4679 8 999983 2567899999874 445679999
Q ss_pred HHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHH--HhcCCCE----EEEeC-
Q 001400 922 SLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVE--LVANPSI----VFMDE- 994 (1085)
Q Consensus 922 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~a--L~~~p~i----lllDE- 994 (1085)
|+ |+........ ..+.+.++++.+++.+..+ +.+|||||||||+|||| |+.+|++ |||||
T Consensus 202 ni-~~~~~~~~~~-----~~~~~~~ll~~~gl~~~~~-------~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEp 268 (460)
T 2npi_A 202 PT-WGQSLTSGAT-----LLHNKQPMVKNFGLERINE-------NKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTP 268 (460)
T ss_dssp TT-CSCBCBSSCC-----SSCCBCCEECCCCSSSGGG-------CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECC
T ss_pred hh-cccccccCcc-----hHHHHHHHHHHhCCCcccc-------hhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCC
Confidence 98 6543211100 0112345566666665543 24799999999999999 9999999 99999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCcc--H---HHHHhcCE-----EEEEecCcEEEEecCCCCc----hHH
Q 001400 995 PTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPS--I---DIFESFDE-----LLFMKRGGELIYAGPLGSK----SCE 1060 (1085)
Q Consensus 995 PtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~--~---~~~~~~d~-----il~l~~gG~~~~~g~~~~~----~~~ 1060 (1085)
||++||+. ...+.+.+++ .+.|+|+++|+.+ . .....+|+ +++|++.|+++ .|+.... ...
T Consensus 269 Pts~LD~~-~~~l~~l~~~---~~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv-~g~~~~~~~~~~~~ 343 (460)
T 2npi_A 269 SISQLDEN-LAELHHIIEK---LNVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS-AVDDVYKRSLQRTS 343 (460)
T ss_dssp CGGGSCSS-CHHHHHHHHH---TTCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC-CCCHHHHHHHHHHH
T ss_pred cccccChh-HHHHHHHHHH---hCCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE-ECCHHHHhhhhHHH
Confidence 99999999 6666666555 3889999999976 3 24467899 99998345666 7765432 234
Q ss_pred HHHHHHhc
Q 001400 1061 LIKYFEVE 1068 (1085)
Q Consensus 1061 ~~~~~~~~ 1068 (1085)
+.+||...
T Consensus 344 i~~~f~g~ 351 (460)
T 2npi_A 344 IREYFYGS 351 (460)
T ss_dssp HHHHHHCC
T ss_pred HHHHhCCC
Confidence 66787543
|
| >4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.89 E-value=2.5e-23 Score=244.48 Aligned_cols=236 Identities=13% Similarity=0.101 Sum_probs=148.8
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCC-----------------------------------Ccee
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHH-----------------------------------LQVS 192 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~-----------------------------------~~~~ 192 (1085)
..+++++++.+.+| +++|+|||||||||||++|++.+... ..-+
T Consensus 48 f~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~ 126 (415)
T 4aby_A 48 LATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGR 126 (415)
T ss_dssp ETTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSC
T ss_pred ccceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCc
Confidence 45899999999999 99999999999999999998887531 0126
Q ss_pred eEEEECCccCCCCC----CCceEEEEccCCCCCCCCCHHHHHHHhhhhcCC-CCc----hhhhHHHHHHHHHhCCCCC--
Q 001400 193 GKITYNGHGFKEFV----PPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGV-GSK----YDMITELARREKIAGIKPD-- 261 (1085)
Q Consensus 193 G~i~~~G~~~~~~~----~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~-~~~----~~~~~~~~~~e~~~~~~~~-- 261 (1085)
|++.+||.+++... ....+++++|++.++. .+..+...|.-..... ... +....+.. .+...-....
T Consensus 127 ~~i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l-~~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~-~~~~~l~~~~~~ 204 (415)
T 4aby_A 127 GAARLSGEVVSVRELQEWAQGRLTIHWQHSAVSL-LSPANQRGLLDRRVTKEAQAYAAAHAAWREAV-SRLERLQASESS 204 (415)
T ss_dssp EEEEETTEEECHHHHHHHHTTTEEEETTTCTTTT-SSHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-HHHHHC------
T ss_pred eEEEECCEECCHHHHHHHHhhceEEecCcccccc-cCHHHHHHHHHHHhccChHHHHHHHHHHHHHH-HHHHHHHhhhhh
Confidence 88999998875321 1234899999976544 3666555543221100 000 00000000 0000000000
Q ss_pred ---------chHHHHHHHhh-----------hcCcchhHHHHHHHHHhCCcccc----------------cc---cccC-
Q 001400 262 ---------EDLDIFMKSFA-----------LGGQKTSLVVEYIMKILGLDTCA----------------DT---LVGD- 301 (1085)
Q Consensus 262 ---------~d~~~~~~~~~-----------~~~~~~~~~~~~~l~~lgL~~~~----------------dt---~vg~- 301 (1085)
..++.+.+... ......+..++..++.++++... +. .++.
T Consensus 205 ~~~~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 284 (415)
T 4aby_A 205 KHPTSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSAN 284 (415)
T ss_dssp -----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESS
T ss_pred hcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcC
Confidence 00000000000 00111234466777788775410 00 1111
Q ss_pred -----ccccc-CchhhhhHHHHHHHHhCCC--cEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHh
Q 001400 302 -----EMLKG-ISGGQKKRLTTGELLVGPA--RVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYE 373 (1085)
Q Consensus 302 -----~~~~~-LSGGqkqRvsia~al~~~p--~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~ 373 (1085)
..++. |||||||||+||++|+.+| ++|+|||||+|||+.+...+.+.|+++++ +.+ |+.++|.. ++.+
T Consensus 285 ~~~~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~~--~~~-vi~itH~~-~~~~ 360 (415)
T 4aby_A 285 PGEELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD--TRQ-VLVVTHLA-QIAA 360 (415)
T ss_dssp SSCCCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHTT--TSE-EEEECSCH-HHHT
T ss_pred CCCcccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhC--CCE-EEEEeCcH-HHHh
Confidence 11222 6999999999999999999 99999999999999999999999999862 444 45567775 5678
Q ss_pred hcCeEEEe----cCCeEEEec
Q 001400 374 LFDDVILL----SEGQIVYQG 390 (1085)
Q Consensus 374 ~~D~ii~L----~~G~iv~~G 390 (1085)
.+|++++| .+|+++...
T Consensus 361 ~~d~i~~l~k~~~~G~~~~~~ 381 (415)
T 4aby_A 361 RAHHHYKVEKQVEDGRTVSHV 381 (415)
T ss_dssp TCSEEEEEEEEEETTEEEEEE
T ss_pred hcCeEEEEEEeccCCceEEEE
Confidence 99999999 999987654
|
| >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.88 E-value=4.3e-26 Score=240.62 Aligned_cols=144 Identities=15% Similarity=0.141 Sum_probs=97.9
Q ss_pred CCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCChhcccceEEEEccCCCCCCCCCH
Q 001400 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTV 919 (1085)
Q Consensus 840 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gy~~Q~~~~~~~~tv 919 (1085)
+++.+|+|| ++||+++|+||||||||||+++|+|. . +.+|+|............++.+||++|++
T Consensus 11 g~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~--p~~G~I~~~~~~~~~~~~~~~ig~v~q~~-------- 75 (208)
T 3b85_A 11 GQKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-A--LQSKQVSRIILTRPAVEAGEKLGFLPGTL-------- 75 (208)
T ss_dssp HHHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-H--HHTTSCSEEEEEECSCCTTCCCCSSCC----------
T ss_pred hHHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-C--CcCCeeeeEEecCCchhhhcceEEecCCH--------
Confidence 345677785 89999999999999999999999998 5 34566532101111123456799999976
Q ss_pred HHHH-HHhh----hhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Q 001400 920 LESL-LFSA----WLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDE 994 (1085)
Q Consensus 920 ~e~l-~~~~----~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDE 994 (1085)
+||+ .+.. .+.... . .+.++++++. + | |||||++|||||+.+|+||||||
T Consensus 76 ~enl~~~~~~~~~~~~~~~--~----~~~~~~~l~~-g----------------l--Gq~qrv~lAraL~~~p~lllLDE 130 (208)
T 3b85_A 76 NEKIDPYLRPLHDALRDMV--E----PEVIPKLMEA-G----------------I--VEVAPLAYMRGRTLNDAFVILDE 130 (208)
T ss_dssp ----CTTTHHHHHHHTTTS--C----TTHHHHHHHT-T----------------S--EEEEEGGGGTTCCBCSEEEEECS
T ss_pred HHHHHHHHHHHHHHHHHhc--c----HHHHHHHHHh-C----------------C--chHHHHHHHHHHhcCCCEEEEeC
Confidence 4454 2211 011000 0 1123444432 1 2 99999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCcc
Q 001400 995 PTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPS 1029 (1085)
Q Consensus 995 PtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~ 1029 (1085)
||+| ++..+++.|+++ ++|.||| +|||++
T Consensus 131 Pts~----~~~~l~~~l~~l-~~g~tii-vtHd~~ 159 (208)
T 3b85_A 131 AQNT----TPAQMKMFLTRL-GFGSKMV-VTGDIT 159 (208)
T ss_dssp GGGC----CHHHHHHHHTTB-CTTCEEE-EEEC--
T ss_pred Cccc----cHHHHHHHHHHh-cCCCEEE-EECCHH
Confidence 9999 888899999988 6689999 999975
|
| >3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=5.2e-22 Score=228.04 Aligned_cols=82 Identities=23% Similarity=0.386 Sum_probs=74.1
Q ss_pred CCCCCHHHHHHHHHHHHHh------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEE
Q 001400 966 INGLSTEQRKRLTIAVELV------ANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDEL 1039 (1085)
Q Consensus 966 ~~~LS~Gqrqrl~iA~aL~------~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i 1039 (1085)
+.+||||||||++||+||+ .+|++|||||||+|||+.+...+++.|+++.+.|.|||+|||+++ ..+.+|++
T Consensus 277 ~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~--~~~~~d~~ 354 (365)
T 3qf7_A 277 ARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDRE--FSEAFDRK 354 (365)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHH--HHTTCSCE
T ss_pred chhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchH--HHHhCCEE
Confidence 3579999999999999999 799999999999999999999999999999878999999999975 46789999
Q ss_pred EEEecCcEEEE
Q 001400 1040 LFMKRGGELIY 1050 (1085)
Q Consensus 1040 l~l~~gG~~~~ 1050 (1085)
++|++ |+++.
T Consensus 355 ~~l~~-G~i~~ 364 (365)
T 3qf7_A 355 LRITG-GVVVN 364 (365)
T ss_dssp EEEET-TEEC-
T ss_pred EEEEC-CEEEe
Confidence 99985 67653
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=2e-23 Score=214.14 Aligned_cols=150 Identities=16% Similarity=0.189 Sum_probs=102.9
Q ss_pred eeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCChhcccceEEEEccCCCCCC-CCCHHHHHHH
Q 001400 847 NVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSP-GLTVLESLLF 925 (1085)
Q Consensus 847 ~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gy~~Q~~~~~~-~~tv~e~l~~ 925 (1085)
||||++++||+++|+||||||||||++++.+... .+++ .. ..|+++|++.... .-++++.+.
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~~~~--------~~~~-----d~---~~g~~~~~~~~~~~~~~~~~~~~- 63 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFKPTE--------VISS-----DF---CRGLMSDDENDQTVTGAAFDVLH- 63 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSCGGG--------EEEH-----HH---HHHHHCSSTTCGGGHHHHHHHHH-
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHccCCe--------EEcc-----HH---HHHHhcCcccchhhHHHHHHHHH-
Confidence 6899999999999999999999999999764211 1111 11 1256666543110 001111111
Q ss_pred hhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHH---
Q 001400 926 SAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDAR--- 1002 (1085)
Q Consensus 926 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEPtsgLD~~--- 1002 (1085)
... +.....+.....+.. ...|+|||||++||+|++.+|++|+|||||++||+.
T Consensus 64 ----------------~~~-~~~~~~g~~~~~~~~------~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~ 120 (171)
T 4gp7_A 64 ----------------YIV-SKRLQLGKLTVVDAT------NVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKN 120 (171)
T ss_dssp ----------------HHH-HHHHHTTCCEEEESC------CCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHT
T ss_pred ----------------HHH-HHHHhCCCeEEEECC------CCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhc
Confidence 111 112223443333322 246999999999999999999999999999999999
Q ss_pred -------------HHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCE
Q 001400 1003 -------------AAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDE 1038 (1085)
Q Consensus 1003 -------------~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~ 1038 (1085)
....+++.++++.++|.|+|++||+++ ..+.+++
T Consensus 121 R~~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~--~~~~~~~ 167 (171)
T 4gp7_A 121 RTDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPE--EVEEVVF 167 (171)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHH--HHHHEEE
T ss_pred ccCCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHH--Hhhhhhh
Confidence 668899999988777999999999975 3344443
|
| >1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.86 E-value=7.3e-22 Score=223.58 Aligned_cols=86 Identities=20% Similarity=0.207 Sum_probs=74.7
Q ss_pred CCCCHHHHHHHHHHHHHh----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEE--E
Q 001400 967 NGLSTEQRKRLTIAVELV----ANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDEL--L 1040 (1085)
Q Consensus 967 ~~LS~Gqrqrl~iA~aL~----~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i--l 1040 (1085)
..||+|||||++||++|+ .+|++|+|||||++||+.....+.+.|+++. .|.|||+|||+++ +.+.+|++ +
T Consensus 218 ~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~~~~vi~~tH~~~--~~~~~d~~~~v 294 (322)
T 1e69_A 218 SLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENS-KHTQFIVITHNKI--VMEAADLLHGV 294 (322)
T ss_dssp GGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT-TTSEEEEECCCTT--GGGGCSEEEEE
T ss_pred hhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEECCHH--HHhhCceEEEE
Confidence 579999999999999997 6889999999999999999999999999984 5889999999964 56789986 8
Q ss_pred EEecCcEEEEecCCC
Q 001400 1041 FMKRGGELIYAGPLG 1055 (1085)
Q Consensus 1041 ~l~~gG~~~~~g~~~ 1055 (1085)
+|.+|...+....++
T Consensus 295 ~~~~g~s~~~~~~~~ 309 (322)
T 1e69_A 295 TMVNGVSAIVPVEVE 309 (322)
T ss_dssp EESSSCEEEEECCC-
T ss_pred EEeCCEEEEEEEEcc
Confidence 888877777766654
|
| >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.6e-23 Score=221.05 Aligned_cols=149 Identities=17% Similarity=0.195 Sum_probs=95.8
Q ss_pred ceeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCCCceEEEEccCCCCCCCCCH
Q 001400 147 KLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTV 226 (1085)
Q Consensus 147 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV 226 (1085)
++.+|+|+ ++|++++|+|||||||||||++|+|. +|+ +|+|............++.++|++|++
T Consensus 12 ~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~---~G~I~~~~~~~~~~~~~~~ig~v~q~~-------- 75 (208)
T 3b85_A 12 QKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQ---SKQVSRIILTRPAVEAGEKLGFLPGTL-------- 75 (208)
T ss_dssp HHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHH---TTSCSEEEEEECSCCTTCCCCSSCC----------
T ss_pred HHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCc---CCeeeeEEecCCchhhhcceEEecCCH--------
Confidence 35688986 89999999999999999999999999 764 677732111111112356799999976
Q ss_pred HHHH-HHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCcccc
Q 001400 227 RETL-DFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLK 305 (1085)
Q Consensus 227 ~E~l-~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 305 (1085)
+||+ .+..... + ...... ....++++++. |
T Consensus 76 ~enl~~~~~~~~------~---------~~~~~~------------------~~~~~~~~l~~-g--------------- 106 (208)
T 3b85_A 76 NEKIDPYLRPLH------D---------ALRDMV------------------EPEVIPKLMEA-G--------------- 106 (208)
T ss_dssp ----CTTTHHHH------H---------HHTTTS------------------CTTHHHHHHHT-T---------------
T ss_pred HHHHHHHHHHHH------H---------HHHHhc------------------cHHHHHHHHHh-C---------------
Confidence 5666 3321000 0 000000 01124444443 2
Q ss_pred cCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHH
Q 001400 306 GISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEA 371 (1085)
Q Consensus 306 ~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~ 371 (1085)
+ ||||||+|||||+.+|++|+|||||+| ++..+.+.|+++ + .+++|+ ++|+..++
T Consensus 107 -l--Gq~qrv~lAraL~~~p~lllLDEPts~----~~~~l~~~l~~l-~--~g~tii-vtHd~~~~ 161 (208)
T 3b85_A 107 -I--VEVAPLAYMRGRTLNDAFVILDEAQNT----TPAQMKMFLTRL-G--FGSKMV-VTGDITQV 161 (208)
T ss_dssp -S--EEEEEGGGGTTCCBCSEEEEECSGGGC----CHHHHHHHHTTB-C--TTCEEE-EEEC----
T ss_pred -C--chHHHHHHHHHHhcCCCEEEEeCCccc----cHHHHHHHHHHh-c--CCCEEE-EECCHHHH
Confidence 2 999999999999999999999999999 888899999876 3 245666 77877655
|
| >3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=3.1e-21 Score=221.62 Aligned_cols=84 Identities=24% Similarity=0.391 Sum_probs=72.7
Q ss_pred cccccCchhhhhHHHHHHHHh------CCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhc
Q 001400 302 EMLKGISGGQKKRLTTGELLV------GPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELF 375 (1085)
Q Consensus 302 ~~~~~LSGGqkqRvsia~al~------~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~ 375 (1085)
+.+.+|||||||||+||+||+ .+|++|||||||+|||+.+...+++.|+++.+ .+. +|+.++|+... ...+
T Consensus 275 ~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~-~g~-tvi~itH~~~~-~~~~ 351 (365)
T 3qf7_A 275 RPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELER-LNK-VIVFITHDREF-SEAF 351 (365)
T ss_dssp EEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGG-SSS-EEEEEESCHHH-HTTC
T ss_pred CCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCC-EEEEEecchHH-HHhC
Confidence 455679999999999999999 79999999999999999999999999999865 344 55557788766 7889
Q ss_pred CeEEEecCCeEEE
Q 001400 376 DDVILLSEGQIVY 388 (1085)
Q Consensus 376 D~ii~L~~G~iv~ 388 (1085)
|++++|++|+++.
T Consensus 352 d~~~~l~~G~i~~ 364 (365)
T 3qf7_A 352 DRKLRITGGVVVN 364 (365)
T ss_dssp SCEEEEETTEEC-
T ss_pred CEEEEEECCEEEe
Confidence 9999999999874
|
| >2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=2e-23 Score=231.36 Aligned_cols=158 Identities=13% Similarity=0.213 Sum_probs=118.8
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCCCceEEEEccCCCCCCCCCHH
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVR 227 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 227 (1085)
.++|+|+|+.|++|++++|+||||||||||+++|+|++ +|+| ++|++|++.++. .|++
T Consensus 113 ~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~------~G~I---------------~~~v~q~~~lf~-~ti~ 170 (305)
T 2v9p_A 113 INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL------GGSV---------------LSFANHKSHFWL-ASLA 170 (305)
T ss_dssp HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH------TCEE---------------ECGGGTTSGGGG-GGGT
T ss_pred hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc------CceE---------------EEEecCcccccc-ccHH
Confidence 36999999999999999999999999999999999987 6887 357888887666 4888
Q ss_pred H-HHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCccccc
Q 001400 228 E-TLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKG 306 (1085)
Q Consensus 228 E-~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 306 (1085)
| ||.|.... . + .+...++.+ |++..| | ..
T Consensus 171 ~~ni~~~~~~-------~---~--------------------------------~~~~~i~~~-L~~gld---g----~~ 200 (305)
T 2v9p_A 171 DTRAALVDDA-------T---H--------------------------------ACWRYFDTY-LRNALD---G----YP 200 (305)
T ss_dssp TCSCEEEEEE-------C---H--------------------------------HHHHHHHHT-TTGGGG---T----CC
T ss_pred HHhhccCccc-------c---H--------------------------------HHHHHHHHH-hHccCC---c----cC
Confidence 7 77663110 0 0 022233333 444444 3 46
Q ss_pred CchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEecCCeE
Q 001400 307 ISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQI 386 (1085)
Q Consensus 307 LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~~G~i 386 (1085)
|||||||| |||++.+|+||+ ||+||+.+...|.. + +|. .++...+|+| +|++|++
T Consensus 201 LSgGqkQR---ARAll~~p~iLl----Ts~LD~~~~~~i~~----l------------tH~-~~~~~~aD~i-vl~~G~i 255 (305)
T 2v9p_A 201 VSIDRKHK---AAVQIKAPPLLV----TSNIDVQAEDRYLY----L------------HSR-VQTFRFEQPC-TDESGEQ 255 (305)
T ss_dssp EECCCSSC---CCCEECCCCEEE----EESSCSTTCGGGGG----G------------TTT-EEEEECCCCC-CCC---C
T ss_pred cCHHHHHH---HHHHhCCCCEEE----ECCCCHHHHHHHHH----H------------hCC-HHHHHhCCEE-EEeCCEE
Confidence 99999999 999999999999 99999999887752 1 233 2345678999 9999999
Q ss_pred EEecChhhHHHHHHhC
Q 001400 387 VYQGPRVSVLDFFASM 402 (1085)
Q Consensus 387 v~~G~~~~~~~~f~~~ 402 (1085)
++.|+++++..+|.++
T Consensus 256 v~~g~~~el~~~y~~l 271 (305)
T 2v9p_A 256 PFNITDADWKSFFVRL 271 (305)
T ss_dssp CCCCCHHHHHHHHHHS
T ss_pred EEeCCHHHHHHHHHHH
Confidence 9999999987666543
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=8.8e-23 Score=235.64 Aligned_cols=172 Identities=10% Similarity=0.097 Sum_probs=133.0
Q ss_pred eeecccceeeEeCCe--------------------EEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCC
Q 001400 148 LTILDDLSGIIRPSR--------------------LTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP 207 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~--------------------~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~ 207 (1085)
..+|++||+.+++|+ +++|+||||||||||+|+|+|++++. +|+|.++|.+.+
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~---~GsI~~~g~~~t---- 108 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEE---EGAAKTGVVEVT---- 108 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTS---TTSCCCCC--------
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCcc---CceEEECCeecc----
Confidence 568999999999999 99999999999999999999998876 899999987643
Q ss_pred CceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHH
Q 001400 208 PRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMK 287 (1085)
Q Consensus 208 ~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~ 287 (1085)
+ .+|++|++ .++.+|+.||+.++.. +..++++++
T Consensus 109 -~-~~~v~q~~-~~~~ltv~D~~g~~~~-------------------------------------------~~~~~~~L~ 142 (413)
T 1tq4_A 109 -M-ERHPYKHP-NIPNVVFWDLPGIGST-------------------------------------------NFPPDTYLE 142 (413)
T ss_dssp -C-CCEEEECS-SCTTEEEEECCCGGGS-------------------------------------------SCCHHHHHH
T ss_pred -e-eEEecccc-ccCCeeehHhhcccch-------------------------------------------HHHHHHHHH
Confidence 1 27899986 4778899888754210 011566788
Q ss_pred HhCCcccccccccCcccccCchh--hhhHHHHHHHHhC----------CCcEeEEeCCCCCCCHHHHHHHHHHHHHHHh-
Q 001400 288 ILGLDTCADTLVGDEMLKGISGG--QKKRLTTGELLVG----------PARVLFMDEISNGLDSSTTYQIIKYLKHSTR- 354 (1085)
Q Consensus 288 ~lgL~~~~dt~vg~~~~~~LSGG--qkqRvsia~al~~----------~p~vlllDEptsgLD~~~~~~i~~~l~~~~~- 354 (1085)
.++|.+.. .. .. |||| ||||+.||++|.. +|++++|||||+|||+.++.++.+.++++..
T Consensus 143 ~~~L~~~~-~~-----~~-lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~ 215 (413)
T 1tq4_A 143 KMKFYEYD-FF-----II-ISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVN 215 (413)
T ss_dssp HTTGGGCS-EE-----EE-EESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHH
T ss_pred HcCCCccC-Ce-----EE-eCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHH
Confidence 88887642 21 22 9999 9999999999999 9999999999999999999999999998752
Q ss_pred ---cc---CCEEEEEEecChhH--HHhhcCeEE
Q 001400 355 ---AL---DGTTVISLLQPAPE--AYELFDDVI 379 (1085)
Q Consensus 355 ---~~---~~t~ii~~~q~~~~--~~~~~D~ii 379 (1085)
.. ..++++...|...+ +.+++|+|.
T Consensus 216 ~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~ 248 (413)
T 1tq4_A 216 TFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLI 248 (413)
T ss_dssp HHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHH
T ss_pred HHHhcCCCCCcEEEEecCcCCccCHHHHHHHHH
Confidence 21 23555545565555 667777664
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.82 E-value=2.8e-21 Score=199.06 Aligned_cols=149 Identities=17% Similarity=0.171 Sum_probs=100.2
Q ss_pred EEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCCh---hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCC
Q 001400 857 LTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPS 933 (1085)
Q Consensus 857 ~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gy~~Q~~~~~~~~tv~e~l~~~~~~~~~~ 933 (1085)
+++|+||||||||||+++|+|... |.++|++... ...++.+||++|+. ++.+++ +. .+..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~-------i~~~g~~~~~~~~~~~~~~ig~~~~~~------~~~~~~-~~-~~~~-- 64 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG-------KRAIGFWTEEVRDPETKKRTGFRIITT------EGKKKI-FS-SKFF-- 64 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG-------GGEEEEEEEEEC------CCEEEEEET------TCCEEE-EE-ETTC--
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-------CcCCCEEhhhhccccccceeEEEeecC------cHHHHH-HH-hhcC--
Confidence 589999999999999999999653 2233332211 12356789999975 222222 11 0000
Q ss_pred cccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHH-----HhcCCCEEEEeC--CCCCCCHHHHHH
Q 001400 934 EIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVE-----LVANPSIVFMDE--PTSGLDARAAAI 1006 (1085)
Q Consensus 934 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~a-----L~~~p~illlDE--PtsgLD~~~~~~ 1006 (1085)
.-.+..+.. +..||+|||||++||+| |+.+|++|+||| ||++||+.....
T Consensus 65 ------------------~~~~~~~~~-----~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~ 121 (178)
T 1ye8_A 65 ------------------TSKKLVGSY-----GVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDL 121 (178)
T ss_dssp ------------------CCSSEETTE-----EECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHH
T ss_pred ------------------Ccccccccc-----ccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHH
Confidence 000122222 24699999999999996 999999999999 999999999999
Q ss_pred HHHHHHHHHHCCceEEEEec---CccHHHHHhcCEEEEEecCcEEEEecCC
Q 001400 1007 VMRTVRNIVNTGRTIVCTIH---QPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1085)
Q Consensus 1007 i~~~l~~~~~~g~tvi~~~H---~~~~~~~~~~d~il~l~~gG~~~~~g~~ 1054 (1085)
+.+.+++ .+.|+|+++| +.. .+...+|+ .+|+++...+.
T Consensus 122 l~~~l~~---~~~~~i~~~H~~h~~~-~~~~i~~r-----~~~~i~~~~~~ 163 (178)
T 1ye8_A 122 VRQIMHD---PNVNVVATIPIRDVHP-LVKEIRRL-----PGAVLIELTPE 163 (178)
T ss_dssp HHHHHTC---TTSEEEEECCSSCCSH-HHHHHHTC-----TTCEEEECCTT
T ss_pred HHHHHhc---CCCeEEEEEccCCCch-HHHHHHhc-----CCcEEEEecCc
Confidence 9988876 4677888886 544 35566776 45677765443
|
| >1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.81 E-value=2.3e-20 Score=211.22 Aligned_cols=81 Identities=22% Similarity=0.328 Sum_probs=67.5
Q ss_pred ccccCchhhhhHHHHHHHHh----CCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeE
Q 001400 303 MLKGISGGQKKRLTTGELLV----GPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDV 378 (1085)
Q Consensus 303 ~~~~LSGGqkqRvsia~al~----~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i 378 (1085)
.+..||||||||++||++|+ .+|++|+|||||++||+.....+.+.++++.+ + ++++.++|. .++.+.+|++
T Consensus 216 ~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~--~-~~vi~~tH~-~~~~~~~d~~ 291 (322)
T 1e69_A 216 KLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSK--H-TQFIVITHN-KIVMEAADLL 291 (322)
T ss_dssp BGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTT--T-SEEEEECCC-TTGGGGCSEE
T ss_pred chhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--C-CeEEEEECC-HHHHhhCceE
Confidence 34579999999999999997 78999999999999999999999999998742 3 445556676 5678899987
Q ss_pred --EEecCCeEE
Q 001400 379 --ILLSEGQIV 387 (1085)
Q Consensus 379 --i~L~~G~iv 387 (1085)
++|.+|...
T Consensus 292 ~~v~~~~g~s~ 302 (322)
T 1e69_A 292 HGVTMVNGVSA 302 (322)
T ss_dssp EEEEESSSCEE
T ss_pred EEEEEeCCEEE
Confidence 788887654
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=4.9e-23 Score=237.71 Aligned_cols=171 Identities=14% Similarity=0.148 Sum_probs=133.8
Q ss_pred eEEeeeeeEEEeCCe--------------------EEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCChhccc
Q 001400 842 LQLLVNVTGAFRPGV--------------------LTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFA 901 (1085)
Q Consensus 842 ~~~L~~vs~~i~~Ge--------------------~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~ 901 (1085)
..+|++||+++++|+ ++||+|+||||||||+++|+|... +.+|+|.++|.+.+
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~--p~~GsI~~~g~~~t----- 108 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGN--EEEGAAKTGVVEVT----- 108 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCT--TSTTSCCCCC---------
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCC--ccCceEEECCeecc-----
Confidence 357889999999999 999999999999999999999766 45789988887542
Q ss_pred ceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHH--HHHHHHH
Q 001400 902 RISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTE--QRKRLTI 979 (1085)
Q Consensus 902 ~~~gy~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~G--qrqrl~i 979 (1085)
+ .+|++|++ .++.+|+.|++.++. + +..++++++.+++.+..... .||+| ||||+.|
T Consensus 109 ~-~~~v~q~~-~~~~ltv~D~~g~~~----~--------~~~~~~~L~~~~L~~~~~~~-------~lS~G~~~kqrv~l 167 (413)
T 1tq4_A 109 M-ERHPYKHP-NIPNVVFWDLPGIGS----T--------NFPPDTYLEKMKFYEYDFFI-------IISATRFKKNDIDI 167 (413)
T ss_dssp C-CCEEEECS-SCTTEEEEECCCGGG----S--------SCCHHHHHHHTTGGGCSEEE-------EEESSCCCHHHHHH
T ss_pred e-eEEecccc-ccCCeeehHhhcccc----h--------HHHHHHHHHHcCCCccCCeE-------EeCCCCccHHHHHH
Confidence 1 27899975 467888888875532 1 11357888888876542221 28999 9999999
Q ss_pred HHHHhc----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-----HCC----ceEEEEecCccH-HHHHhcCEE
Q 001400 980 AVELVA----------NPSIVFMDEPTSGLDARAAAIVMRTVRNIV-----NTG----RTIVCTIHQPSI-DIFESFDEL 1039 (1085)
Q Consensus 980 A~aL~~----------~p~illlDEPtsgLD~~~~~~i~~~l~~~~-----~~g----~tvi~~~H~~~~-~~~~~~d~i 1039 (1085)
|++|+. +|++++|||||+|||+.++..+++.|+++. +.| .+|++++|+.+. ++-+.+|++
T Consensus 168 a~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I 247 (413)
T 1tq4_A 168 AKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKL 247 (413)
T ss_dssp HHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHH
T ss_pred HHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHH
Confidence 999999 999999999999999999999999999984 222 578899998762 255667777
Q ss_pred E
Q 001400 1040 L 1040 (1085)
Q Consensus 1040 l 1040 (1085)
.
T Consensus 248 ~ 248 (413)
T 1tq4_A 248 I 248 (413)
T ss_dssp H
T ss_pred H
Confidence 5
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.81 E-value=4.4e-21 Score=197.53 Aligned_cols=149 Identities=15% Similarity=0.161 Sum_probs=101.8
Q ss_pred EEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCCCceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCc
Q 001400 163 LTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSK 242 (1085)
Q Consensus 163 ~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~ 242 (1085)
.++|+||||||||||+++|+|.+. ....|... .+......++.++|++|+. |+.+++ ++ +.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~--i~~~g~~~---~~~~~~~~~~~ig~~~~~~------~~~~~~-~~-~~------ 62 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG--KRAIGFWT---EEVRDPETKKRTGFRIITT------EGKKKI-FS-SK------ 62 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG--GGEEEEEE---EEEC------CCEEEEEET------TCCEEE-EE-ET------
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC--CcCCCEEh---hhhccccccceeEEEeecC------cHHHHH-HH-hh------
Confidence 589999999999999999999985 23344321 1111102345789999975 222222 10 00
Q ss_pred hhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCcccccCchhhhhHHHHHHH--
Q 001400 243 YDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGEL-- 320 (1085)
Q Consensus 243 ~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqkqRvsia~a-- 320 (1085)
+... +..+ ++.+..||||||||++||++
T Consensus 63 -----------------------------------------------~~~~--~~~~-~~~~~~lSgG~~qr~~la~aa~ 92 (178)
T 1ye8_A 63 -----------------------------------------------FFTS--KKLV-GSYGVNVQYFEELAIPILERAY 92 (178)
T ss_dssp -----------------------------------------------TCCC--SSEE-TTEEECHHHHHHHHHHHHHHHH
T ss_pred -----------------------------------------------cCCc--cccc-cccccCcCHHHHHHHHHHhhcc
Confidence 0000 0111 12345699999999999996
Q ss_pred ---HhCCCcEeEEeC--CCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEe--cChhHHHhhcCeEEEecCCeEEE
Q 001400 321 ---LVGPARVLFMDE--ISNGLDSSTTYQIIKYLKHSTRALDGTTVISLL--QPAPEAYELFDDVILLSEGQIVY 388 (1085)
Q Consensus 321 ---l~~~p~vlllDE--ptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~--q~~~~~~~~~D~ii~L~~G~iv~ 388 (1085)
++.+|++++||| ||++||+.....+.+.+++ .+.++++++| |+.+.+..++|+ .+|+++.
T Consensus 93 ~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~----~~~~~i~~~H~~h~~~~~~~i~~r----~~~~i~~ 159 (178)
T 1ye8_A 93 REAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD----PNVNVVATIPIRDVHPLVKEIRRL----PGAVLIE 159 (178)
T ss_dssp HHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC----TTSEEEEECCSSCCSHHHHHHHTC----TTCEEEE
T ss_pred ccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhc----CCCeEEEEEccCCCchHHHHHHhc----CCcEEEE
Confidence 999999999999 9999999999999988874 2455777664 788888888998 5566655
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=4.7e-21 Score=196.41 Aligned_cols=66 Identities=14% Similarity=0.042 Sum_probs=55.7
Q ss_pred cCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHH----------------HHHHHHHHHHHHHhccCCEEEEEEecChh
Q 001400 306 GISGGQKKRLTTGELLVGPARVLFMDEISNGLDSS----------------TTYQIIKYLKHSTRALDGTTVISLLQPAP 369 (1085)
Q Consensus 306 ~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~----------------~~~~i~~~l~~~~~~~~~t~ii~~~q~~~ 369 (1085)
..|||||||++||+++..+|++++|||||++||+. ...++.+.++++.+. | .+++.++|+.+
T Consensus 83 ~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~-g-~tvi~vtH~~~ 160 (171)
T 4gp7_A 83 VQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQRE-G-FRYVYILNSPE 160 (171)
T ss_dssp CSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHH-T-CSEEEEECSHH
T ss_pred CCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhc-C-CcEEEEeCCHH
Confidence 36999999999999999999999999999999999 568889988887654 4 44555778887
Q ss_pred HHHh
Q 001400 370 EAYE 373 (1085)
Q Consensus 370 ~~~~ 373 (1085)
++..
T Consensus 161 ~~~~ 164 (171)
T 4gp7_A 161 EVEE 164 (171)
T ss_dssp HHHH
T ss_pred Hhhh
Confidence 7743
|
| >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A | Back alignment and structure |
|---|
Probab=99.81 E-value=1e-23 Score=223.35 Aligned_cols=184 Identities=15% Similarity=0.048 Sum_probs=115.5
Q ss_pred CeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCChhcccceEEEEccCCCCCCCCCHH
Q 001400 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVL 920 (1085)
Q Consensus 841 ~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gy~~Q~~~~~~~~tv~ 920 (1085)
...+++| .+|++|++++|+||||||||||+++|+|... .+.+.+.+.+.+... ..++.++|++|++..++.+|+.
T Consensus 8 ~~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~--~i~~~~~~~~~~~~~-~~~~~i~~~~q~~~~~~~~~~~ 82 (207)
T 1znw_A 8 TKPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIP--NLHFSVSATTRAPRP-GEVDGVDYHFIDPTRFQQLIDQ 82 (207)
T ss_dssp -------------CCCEEEEECSTTSSHHHHHHHHHHHST--TCEECCCEESSCCCT-TCCBTTTBEECCHHHHHHHHHT
T ss_pred CCcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCC--ceEEcccccccCCcc-cccCCCeeEecCHHHHHHHHhc
Confidence 3456777 6899999999999999999999999999754 123333333332221 2245689999998777777777
Q ss_pred HHHHHhhhhcC---CCcccHHHHHHHHHHH------HHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEE
Q 001400 921 ESLLFSAWLRL---PSEIELETQRAFVEEV------MELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVF 991 (1085)
Q Consensus 921 e~l~~~~~~~~---~~~~~~~~~~~~~~~~------l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~ill 991 (1085)
+++.+...... .......+.++.+++. ++.+++....+... ..|| +|+.+|++++
T Consensus 83 ~~l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~lS-----------~l~~~p~~~~ 146 (207)
T 1znw_A 83 GELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMP-----EAVT-----------VFLAPPSWQD 146 (207)
T ss_dssp TCEEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCT-----TSEE-----------EEEECSCHHH
T ss_pred CCceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcC-----CcEE-----------EEEECCCHHH
Confidence 76542211110 0012233333334443 33333333333321 3466 8899999999
Q ss_pred EeCCCCCC----CHHHHHHHHHHHHHHHH-CCceEEEEecCccHHHHHhcCEEEEEecCc
Q 001400 992 MDEPTSGL----DARAAAIVMRTVRNIVN-TGRTIVCTIHQPSIDIFESFDELLFMKRGG 1046 (1085)
Q Consensus 992 lDEPtsgL----D~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~il~l~~gG 1046 (1085)
|||||+++ |+..+..+++.++++.+ .|.|||++|||++ ++...||++++|.+.|
T Consensus 147 LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~-~~~~~~d~i~~l~~p~ 205 (207)
T 1znw_A 147 LQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLE-SACAELVSLLVGTAPG 205 (207)
T ss_dssp HHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHH-HHHHHHHHHHC-----
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHH-HHHHHHHHHHHhccCC
Confidence 99999998 78899999999999874 5899999999987 5788899999986554
|
| >3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.6e-20 Score=209.42 Aligned_cols=171 Identities=15% Similarity=0.137 Sum_probs=124.5
Q ss_pred eeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCChh-------cc--cceEEEEccCCC-CCC
Q 001400 846 VNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE-------TF--ARISGYCEQNDI-HSP 915 (1085)
Q Consensus 846 ~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~-------~~--~~~~gy~~Q~~~-~~~ 915 (1085)
+++|+++++|++++|+||||||||||++.|+|... +..|+|.++|.+.... .+ ++.++|++|++. ..|
T Consensus 91 ~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~--~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~ 168 (302)
T 3b9q_A 91 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLK--NEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKA 168 (302)
T ss_dssp CSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHH--HTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCH
T ss_pred cccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHH--HcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCH
Confidence 46888899999999999999999999999999754 3469999999876421 22 346899999988 888
Q ss_pred CCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCC--EEEEe
Q 001400 916 GLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPS--IVFMD 993 (1085)
Q Consensus 916 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~--illlD 993 (1085)
..|++|++.+... +. .+ ..+++.+++.+..+... .+|| |||++|||+|+.+|+ +|+||
T Consensus 169 ~~~v~e~l~~~~~-~~-~d----------~~lldt~gl~~~~~~~~-----~eLS---kqr~~iaral~~~P~e~lLvLD 228 (302)
T 3b9q_A 169 ATVLSKAVKRGKE-EG-YD----------VVLCDTSGRLHTNYSLM-----EELI---ACKKAVGKIVSGAPNEILLVLD 228 (302)
T ss_dssp HHHHHHHHHHHHH-TT-CS----------EEEECCCCCSSCCHHHH-----HHHH---HHHHHHHTTSTTCCSEEEEEEE
T ss_pred HHHHHHHHHHHHH-cC-Cc----------chHHhcCCCCcchhHHH-----HHHH---HHHHHHHHhhccCCCeeEEEEe
Confidence 8999999987532 11 00 12344555554444332 3688 999999999999999 99999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHH-HCCceEEEEecCcc-------HH-HHHhcCEEEEEecC
Q 001400 994 EPTSGLDARAAAIVMRTVRNIV-NTGRTIVCTIHQPS-------ID-IFESFDELLFMKRG 1045 (1085)
Q Consensus 994 EPtsgLD~~~~~~i~~~l~~~~-~~g~tvi~~~H~~~-------~~-~~~~~d~il~l~~g 1045 (1085)
||+|||+..+. +++. ..|.|+|++||... +. .....+.+.++..|
T Consensus 229 -ptsglD~~~~~------~~~~~~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~G 282 (302)
T 3b9q_A 229 -GNTGLNMLPQA------REFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVG 282 (302)
T ss_dssp -GGGGGGGHHHH------HHHHHHTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECS
T ss_pred -CCCCcCHHHHH------HHHHHhcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCC
Confidence 99999988552 4444 35899999999321 11 22345677877754
|
| >3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.77 E-value=2.1e-20 Score=208.49 Aligned_cols=174 Identities=19% Similarity=0.188 Sum_probs=126.7
Q ss_pred cccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCC-------C--CceEEEEccCCC-C
Q 001400 151 LDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV-------P--PRTSAYVSQQDW-Q 220 (1085)
Q Consensus 151 L~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~-------~--~~~~~yv~Q~d~-~ 220 (1085)
++++|+.+++|++++|+||||||||||++.|+|.+.+. +|+|.++|.+..... . ++.++|++|++. .
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~---~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~ 166 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNE---GTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKA 166 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CC
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHc---CCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCcc
Confidence 46789999999999999999999999999999999765 899999998764321 1 235899999988 8
Q ss_pred CCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCccccccccc
Q 001400 221 VAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVG 300 (1085)
Q Consensus 221 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 300 (1085)
++.+||+|++.++... + ++ ..+++.+|+.+..+..+
T Consensus 167 ~~~~~v~e~l~~~~~~-~----~d--------------------------------------~~lldt~gl~~~~~~~~- 202 (302)
T 3b9q_A 167 KAATVLSKAVKRGKEE-G----YD--------------------------------------VVLCDTSGRLHTNYSLM- 202 (302)
T ss_dssp CHHHHHHHHHHHHHHT-T----CS--------------------------------------EEEECCCCCSSCCHHHH-
T ss_pred CHHHHHHHHHHHHHHc-C----Cc--------------------------------------chHHhcCCCCcchhHHH-
Confidence 8999999999875321 0 00 00223456655544443
Q ss_pred CcccccCchhhhhHHHHHHHHhCCCc--EeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEec---------Chh
Q 001400 301 DEMLKGISGGQKKRLTTGELLVGPAR--VLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQ---------PAP 369 (1085)
Q Consensus 301 ~~~~~~LSGGqkqRvsia~al~~~p~--vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q---------~~~ 369 (1085)
..|| |||++||++++.+|+ +|+|| ||+|||+.... +++.+..+.+.++ ++| ...
T Consensus 203 ----~eLS---kqr~~iaral~~~P~e~lLvLD-ptsglD~~~~~------~~~~~~~g~t~ii-iThlD~~~~~g~~l~ 267 (302)
T 3b9q_A 203 ----EELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQA------REFNEVVGITGLI-LTKLDGSARGGCVVS 267 (302)
T ss_dssp ----HHHH---HHHHHHHTTSTTCCSEEEEEEE-GGGGGGGHHHH------HHHHHHTCCCEEE-EECCSSCSCTHHHHH
T ss_pred ----HHHH---HHHHHHHHhhccCCCeeEEEEe-CCCCcCHHHHH------HHHHHhcCCCEEE-EeCCCCCCccChhee
Confidence 4599 999999999999999 99999 99999998642 3343333445555 555 223
Q ss_pred HHHhhcCeEEEecCCeE
Q 001400 370 EAYELFDDVILLSEGQI 386 (1085)
Q Consensus 370 ~~~~~~D~ii~L~~G~i 386 (1085)
.+....+.|..+..|+.
T Consensus 268 ~~~~~~~pi~~i~~Ge~ 284 (302)
T 3b9q_A 268 VVEELGIPVKFIGVGEA 284 (302)
T ss_dssp HHHHHCCCEEEEECSSS
T ss_pred hHHHHCCCEEEEeCCCC
Confidence 44456678888888865
|
| >2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=1.2e-22 Score=225.20 Aligned_cols=147 Identities=13% Similarity=0.118 Sum_probs=109.5
Q ss_pred EEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCChhcccceEEEEccCCCCCCCCCHHH-
Q 001400 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLE- 921 (1085)
Q Consensus 843 ~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gy~~Q~~~~~~~~tv~e- 921 (1085)
.+|++||++|++|++++|+||||||||||+++|+|.. +|+|. +|++|++.++.. |++|
T Consensus 114 ~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~-----~G~I~---------------~~v~q~~~lf~~-ti~~~ 172 (305)
T 2v9p_A 114 NALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL-----GGSVL---------------SFANHKSHFWLA-SLADT 172 (305)
T ss_dssp HHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH-----TCEEE---------------CGGGTTSGGGGG-GGTTC
T ss_pred hhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc-----CceEE---------------EEecCccccccc-cHHHH
Confidence 4789999999999999999999999999999999965 46663 456777766653 7776
Q ss_pred HHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCH
Q 001400 922 SLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDA 1001 (1085)
Q Consensus 922 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEPtsgLD~ 1001 (1085)
|+.|.. +... .+++.++.+ +.+..+ +..|||||||| ||||+++|+||| ||+||+
T Consensus 173 ni~~~~------~~~~-----~~~~~i~~~-L~~gld-------g~~LSgGqkQR---ARAll~~p~iLl----Ts~LD~ 226 (305)
T 2v9p_A 173 RAALVD------DATH-----ACWRYFDTY-LRNALD-------GYPVSIDRKHK---AAVQIKAPPLLV----TSNIDV 226 (305)
T ss_dssp SCEEEE------EECH-----HHHHHHHHT-TTGGGG-------TCCEECCCSSC---CCCEECCCCEEE----EESSCS
T ss_pred hhccCc------cccH-----HHHHHHHHH-hHccCC-------ccCcCHHHHHH---HHHHhCCCCEEE----ECCCCH
Confidence 775531 1111 234455543 322222 24799999999 999999999999 999999
Q ss_pred HHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCC
Q 001400 1002 RAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1085)
Q Consensus 1002 ~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~ 1054 (1085)
.++..++. ++|+++ .++.+|++ +|+ +|++++.|+.
T Consensus 227 ~~~~~i~~--------------ltH~~~--~~~~aD~i-vl~-~G~iv~~g~~ 261 (305)
T 2v9p_A 227 QAEDRYLY--------------LHSRVQ--TFRFEQPC-TDE-SGEQPFNITD 261 (305)
T ss_dssp TTCGGGGG--------------GTTTEE--EEECCCCC-CCC----CCCCCCH
T ss_pred HHHHHHHH--------------HhCCHH--HHHhCCEE-EEe-CCEEEEeCCH
Confidence 99988762 189876 45789999 887 4788888764
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=4e-20 Score=203.14 Aligned_cols=147 Identities=16% Similarity=0.223 Sum_probs=89.6
Q ss_pred EEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCCCceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCc
Q 001400 163 LTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSK 242 (1085)
Q Consensus 163 ~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~ 242 (1085)
.++|+||||||||||+|+|+|...+. +|+|.++|.++......+.++|++|++.+++.+||.||+.|+........
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~---~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~- 79 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSR---KASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENC- 79 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC---------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHH-
Confidence 47999999999999999999999876 89999999887655556789999999998999999999988654321100
Q ss_pred hhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCcccccCchhhhhHHHHHHHHh
Q 001400 243 YDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLV 322 (1085)
Q Consensus 243 ~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqkqRvsia~al~ 322 (1085)
.+ . +...+. ....+... ..||||||||+++||+++
T Consensus 80 ~~------------------~------------------i~~~~~----~~~~~~~~-----~~LS~G~~qrv~iaRal~ 114 (270)
T 3sop_A 80 WE------------------P------------------IEKYIN----EQYEKFLK-----EEVNIARKKRIPDTRVHC 114 (270)
T ss_dssp SH------------------H------------------HHHHHH----HHHHHHHH-----HHSCTTCCSSCCCCSCCE
T ss_pred HH------------------H------------------HHHHHH----HHHHhhhH-----HhcCcccchhhhhheeee
Confidence 00 0 111111 11122222 359999999999999987
Q ss_pred CCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecCh
Q 001400 323 GPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPA 368 (1085)
Q Consensus 323 ~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~ 368 (1085)
. ++|+|||++|||+.. .+.++.+.+. .++|+++ +..
T Consensus 115 ~---lllldep~~gL~~lD----~~~l~~L~~~--~~vI~Vi-~K~ 150 (270)
T 3sop_A 115 C---LYFISPTGHSLRPLD----LEFMKHLSKV--VNIIPVI-AKA 150 (270)
T ss_dssp E---EEEECCCSSSCCHHH----HHHHHHHHTT--SEEEEEE-TTG
T ss_pred e---eEEEecCCCcCCHHH----HHHHHHHHhc--CcEEEEE-ecc
Confidence 5 999999999999987 3444444432 4555544 444
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.4e-20 Score=206.76 Aligned_cols=148 Identities=16% Similarity=0.174 Sum_probs=95.7
Q ss_pred EEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCChhcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCccc
Q 001400 857 LTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIE 936 (1085)
Q Consensus 857 ~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gy~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~ 936 (1085)
.+||+||||||||||+++|+|... +.+|+|.++|.++.....++.+||++|++.+++.+||.|++.|+...... . .
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~--~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~-~-~ 79 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQV--SRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNE-N-C 79 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC--------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCT-T-C
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC--CCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccH-H-H
Confidence 479999999999999999999765 46899999998775555567899999999999999999999887543211 1 1
Q ss_pred HHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 001400 937 LETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVN 1016 (1085)
Q Consensus 937 ~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~ 1016 (1085)
.+ .+.+.++ ....+... ..||+|||||+++||+++. +++|||||+|||+.. .++++.+.+
T Consensus 80 ~~----~i~~~~~----~~~~~~~~-----~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD----~~~l~~L~~ 139 (270)
T 3sop_A 80 WE----PIEKYIN----EQYEKFLK-----EEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD----LEFMKHLSK 139 (270)
T ss_dssp SH----HHHHHHH----HHHHHHHH-----HHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH----HHHHHHHHT
T ss_pred HH----HHHHHHH----HHHHhhhH-----HhcCcccchhhhhheeeee---eEEEecCCCcCCHHH----HHHHHHHHh
Confidence 11 1222222 12222222 3699999999999999886 999999999999987 445555554
Q ss_pred CCceEEEEecCcc
Q 001400 1017 TGRTIVCTIHQPS 1029 (1085)
Q Consensus 1017 ~g~tvi~~~H~~~ 1029 (1085)
. .+||+++|..+
T Consensus 140 ~-~~vI~Vi~K~D 151 (270)
T 3sop_A 140 V-VNIIPVIAKAD 151 (270)
T ss_dssp T-SEEEEEETTGG
T ss_pred c-CcEEEEEeccc
Confidence 5 89999998643
|
| >2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A | Back alignment and structure |
|---|
Probab=99.74 E-value=1.2e-19 Score=205.14 Aligned_cols=131 Identities=17% Similarity=0.132 Sum_probs=102.7
Q ss_pred EeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCCh-hcccceEEEEccCCCCCCCCCHHHH
Q 001400 844 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ-ETFARISGYCEQNDIHSPGLTVLES 922 (1085)
Q Consensus 844 ~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~-~~~~~~~gy~~Q~~~~~~~~tv~e~ 922 (1085)
+++++|+.+++|++++|+|+||||||||+++|+|... +.+|.|.++|.+... ...++.+++++
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~--~~~g~i~i~~~~e~~~~~~~~~i~~~~-------------- 223 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIP--KEERIISIEDTEEIVFKHHKNYTQLFF-------------- 223 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSC--TTSCEEEEESSCCCCCSSCSSEEEEEC--------------
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCc--CCCcEEEECCeeccccccchhEEEEEe--------------
Confidence 6889999999999999999999999999999999876 358999999864110 00111122211
Q ss_pred HHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHH
Q 001400 923 LLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDAR 1002 (1085)
Q Consensus 923 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEPtsgLD~~ 1002 (1085)
+ +||+||++||+||..+|++|+|||||+.
T Consensus 224 ---------------------------------------------g--gg~~~r~~la~aL~~~p~ilildE~~~~---- 252 (330)
T 2pt7_A 224 ---------------------------------------------G--GNITSADCLKSCLRMRPDRIILGELRSS---- 252 (330)
T ss_dssp ---------------------------------------------B--TTBCHHHHHHHHTTSCCSEEEECCCCST----
T ss_pred ---------------------------------------------C--CChhHHHHHHHHhhhCCCEEEEcCCChH----
Confidence 1 7999999999999999999999999982
Q ss_pred HHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEecCc
Q 001400 1003 AAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGG 1046 (1085)
Q Consensus 1003 ~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~gG 1046 (1085)
.+++.|+.+...+.|+|+|+|+++ ..+.+||+++|.+|+
T Consensus 253 ---e~~~~l~~~~~g~~tvi~t~H~~~--~~~~~dri~~l~~g~ 291 (330)
T 2pt7_A 253 ---EAYDFYNVLCSGHKGTLTTLHAGS--SEEAFIRLANMSSSN 291 (330)
T ss_dssp ---HHHHHHHHHHTTCCCEEEEEECSS--HHHHHHHHHHHHHTS
T ss_pred ---HHHHHHHHHhcCCCEEEEEEcccH--HHHHhhhheehhcCC
Confidence 356777776533358999999987 567889999998753
|
| >2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.74 E-value=9.9e-20 Score=206.59 Aligned_cols=170 Identities=15% Similarity=0.150 Sum_probs=125.0
Q ss_pred eeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCChh-------cc--cceEEEEccCCC-CCCC
Q 001400 847 NVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE-------TF--ARISGYCEQNDI-HSPG 916 (1085)
Q Consensus 847 ~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~-------~~--~~~~gy~~Q~~~-~~~~ 916 (1085)
++|+++++|++++|+||||||||||++.|+|... +..|+|.++|.+.... .+ ++.++|++|++. ..|.
T Consensus 149 ~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~--~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~ 226 (359)
T 2og2_A 149 ELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLK--NEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAA 226 (359)
T ss_dssp SCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHH--HTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHH
T ss_pred CcceecCCCeEEEEEcCCCChHHHHHHHHHhhcc--ccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChh
Confidence 5788889999999999999999999999999754 3469999999876421 12 346899999988 8888
Q ss_pred CCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCC--EEEEeC
Q 001400 917 LTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPS--IVFMDE 994 (1085)
Q Consensus 917 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~--illlDE 994 (1085)
.|++|++.+... + ..+ ..+++.+++.+..+... .+|| |||++|||+|+.+|+ +|+||
T Consensus 227 ~tv~e~l~~~~~-~-~~d----------~~lldt~Gl~~~~~~~~-----~eLS---kqr~~iaral~~~P~e~lLvLD- 285 (359)
T 2og2_A 227 TVLSKAVKRGKE-E-GYD----------VVLCDTSGRLHTNYSLM-----EELI---ACKKAVGKIVSGAPNEILLVLD- 285 (359)
T ss_dssp HHHHHHHHHHHH-T-TCS----------EEEEECCCCSSCCHHHH-----HHHH---HHHHHHHHHSTTCCSEEEEEEE-
T ss_pred hhHHHHHHHHHh-C-CCH----------HHHHHhcCCChhhhhHH-----HHHH---HHHHHHHHHHhcCCCceEEEEc-
Confidence 999999987532 1 101 12344556555444332 3688 999999999999999 99999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHH-CCceEEEEecCcc-------HH-HHHhcCEEEEEecC
Q 001400 995 PTSGLDARAAAIVMRTVRNIVN-TGRTIVCTIHQPS-------ID-IFESFDELLFMKRG 1045 (1085)
Q Consensus 995 PtsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~-------~~-~~~~~d~il~l~~g 1045 (1085)
||+|||+..+. +++.+ .|.|+|++||... +. .....+.|.++..|
T Consensus 286 pttglD~~~~~------~~~~~~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~G 339 (359)
T 2og2_A 286 GNTGLNMLPQA------REFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVG 339 (359)
T ss_dssp GGGGGGGHHHH------HHHHHHTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECS
T ss_pred CCCCCCHHHHH------HHHHHhcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCC
Confidence 99999988653 34443 5899999999311 11 22344677777654
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.74 E-value=8.8e-22 Score=210.08 Aligned_cols=156 Identities=12% Similarity=0.074 Sum_probs=98.4
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCC----CCceEEEEccCCCCCCC
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV----PPRTSAYVSQQDWQVAE 223 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~----~~~~~~yv~Q~d~~~~~ 223 (1085)
..-|+|||+.+++|++++|+||||||||||+++|+|.+ | |+|.+ |.+..... ..+.++|++|++..|+.
T Consensus 10 ~~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p-----G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 82 (218)
T 1z6g_A 10 HSSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P-----NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFED 82 (218)
T ss_dssp ------------CCCCEEEECSTTSSHHHHHHHHHHHS-T-----TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHH
T ss_pred cccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C-----CcEEE-eecccCCCCCcccccCCeEEECCHHHHHH
Confidence 34799999999999999999999999999999999987 3 88888 76653322 23568999998765554
Q ss_pred CCH-HHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCc
Q 001400 224 MTV-RETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDE 302 (1085)
Q Consensus 224 lTV-~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 302 (1085)
++. .+++.+. ...+ ..|.. ....++++++...+ ..+.
T Consensus 83 ~~~~~~~l~~~-~~~~--~~~g~--------------------------------~~~~i~~~l~~~~~-----~il~-- 120 (218)
T 1z6g_A 83 KLKNEDFLEYD-NYAN--NFYGT--------------------------------LKSEYDKAKEQNKI-----CLFE-- 120 (218)
T ss_dssp HHHTTCEEEEE-EETT--EEEEE--------------------------------EHHHHHHHHHTTCE-----EEEE--
T ss_pred hhhccchhhhh-hccc--ccCCC--------------------------------cHHHHHHHHhCCCc-----EEEE--
Confidence 321 1111110 0000 00000 01123444443221 1221
Q ss_pred ccccCchhhhhHHHH-----HHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 001400 303 MLKGISGGQKKRLTT-----GELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTR 354 (1085)
Q Consensus 303 ~~~~LSGGqkqRvsi-----a~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~ 354 (1085)
..+|||||||+++ +++++.+|++++|||||+++|..+...|.+.+.....
T Consensus 121 --~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~~d~~~~~~i~~~l~~~~~ 175 (218)
T 1z6g_A 121 --MNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTRNTENQEQIQKRMEQLNI 175 (218)
T ss_dssp --ECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHHTCCCCHHHHHHHHHHHHH
T ss_pred --ecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 3699999999999 8899999999999999999999999999988887644
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.74 E-value=3.1e-22 Score=213.59 Aligned_cols=177 Identities=10% Similarity=0.025 Sum_probs=108.7
Q ss_pred eEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCCh----hcccceEEEEccCCCCCCCC
Q 001400 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ----ETFARISGYCEQNDIHSPGL 917 (1085)
Q Consensus 842 ~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~----~~~~~~~gy~~Q~~~~~~~~ 917 (1085)
..-|+||||+|++|++++|+||||||||||+++|+|..+ |+|.+ |.+... ...++.++|++|++..++.+
T Consensus 10 ~~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~p-----G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 83 (218)
T 1z6g_A 10 HSSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEFP-----NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDK 83 (218)
T ss_dssp ------------CCCCEEEECSTTSSHHHHHHHHHHHST-----TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHH
T ss_pred cccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhCC-----CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHh
Confidence 346889999999999999999999999999999999652 77887 665321 11345678999986654432
Q ss_pred CH-HHHHHHhhhhcCC-CcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHH-----HHHHhcCCCEE
Q 001400 918 TV-LESLLFSAWLRLP-SEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTI-----AVELVANPSIV 990 (1085)
Q Consensus 918 tv-~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~i-----A~aL~~~p~il 990 (1085)
+. .+++.+ ..+... .... ...++++++...+. +.+ ..||||||||++| |++++.+|+++
T Consensus 84 ~~~~~~l~~-~~~~~~~~g~~----~~~i~~~l~~~~~~-il~--------~~lsggq~qR~~i~~~~~~~~ll~~~~~~ 149 (218)
T 1z6g_A 84 LKNEDFLEY-DNYANNFYGTL----KSEYDKAKEQNKIC-LFE--------MNINGVKQLKKSTHIKNALYIFIKPPSTD 149 (218)
T ss_dssp HHTTCEEEE-EEETTEEEEEE----HHHHHHHHHTTCEE-EEE--------ECHHHHHHHTTCSSCCSCEEEEEECSCHH
T ss_pred hhccchhhh-hhcccccCCCc----HHHHHHHHhCCCcE-EEE--------ecHHHHHHHHHHhcCCCcEEEEEeCcCHH
Confidence 21 111110 001100 0111 12356666654321 111 2589999999999 89999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHH-------CCceEEEEecCccHHHHHhcCEE
Q 001400 991 FMDEPTSGLDARAAAIVMRTVRNIVN-------TGRTIVCTIHQPSIDIFESFDEL 1039 (1085)
Q Consensus 991 llDEPtsgLD~~~~~~i~~~l~~~~~-------~g~tvi~~~H~~~~~~~~~~d~i 1039 (1085)
+|||||+++|..+...|.+.+.+... .+.+.|+++|+++ +.+..++++
T Consensus 150 ~Lde~~~~~d~~~~~~i~~~l~~~~~~~~~~h~~~~d~iiv~~~~~-ea~~~~~~i 204 (218)
T 1z6g_A 150 VLLSRLLTRNTENQEQIQKRMEQLNIELHEANLLNFNLSIINDDLT-LTYQQLKNY 204 (218)
T ss_dssp HHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTTSCCSEEEECSSHH-HHHHHHHHH
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcccCCCEEEECCCHH-HHHHHHHHH
Confidence 99999999999999999988887642 3455566666654 344444443
|
| >2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.9e-19 Score=204.31 Aligned_cols=173 Identities=19% Similarity=0.200 Sum_probs=127.1
Q ss_pred ccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCC---------CCceEEEEccCCC-CC
Q 001400 152 DDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV---------PPRTSAYVSQQDW-QV 221 (1085)
Q Consensus 152 ~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~---------~~~~~~yv~Q~d~-~~ 221 (1085)
+++|+.+++|++++|+||||||||||++.|+|.+.+. +|+|.++|.+..... .++.++|++|++. .+
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~---~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~ 224 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNE---GTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAK 224 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCC
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhcccc---CCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccC
Confidence 4689999999999999999999999999999999765 899999998764321 1236899999987 88
Q ss_pred CCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccC
Q 001400 222 AEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGD 301 (1085)
Q Consensus 222 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 301 (1085)
+.+||+|++.++... + ++ ..+++.+|+.+..+..+
T Consensus 225 p~~tv~e~l~~~~~~-~----~d--------------------------------------~~lldt~Gl~~~~~~~~-- 259 (359)
T 2og2_A 225 AATVLSKAVKRGKEE-G----YD--------------------------------------VVLCDTSGRLHTNYSLM-- 259 (359)
T ss_dssp HHHHHHHHHHHHHHT-T----CS--------------------------------------EEEEECCCCSSCCHHHH--
T ss_pred hhhhHHHHHHHHHhC-C----CH--------------------------------------HHHHHhcCCChhhhhHH--
Confidence 999999999875321 0 00 00123456655444433
Q ss_pred cccccCchhhhhHHHHHHHHhCCCc--EeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecC---------hhH
Q 001400 302 EMLKGISGGQKKRLTTGELLVGPAR--VLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQP---------APE 370 (1085)
Q Consensus 302 ~~~~~LSGGqkqRvsia~al~~~p~--vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~---------~~~ 370 (1085)
..|| |||++||++++.+|+ +|+|| ||+|||+.... +.+.+..+.+.|+ ++|. ...
T Consensus 260 ---~eLS---kqr~~iaral~~~P~e~lLvLD-pttglD~~~~~------~~~~~~~g~t~ii-iThlD~~~~gG~~lsi 325 (359)
T 2og2_A 260 ---EELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQA------REFNEVVGITGLI-LTKLDGSARGGCVVSV 325 (359)
T ss_dssp ---HHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGGGGGHHHH------HHHHHHTCCCEEE-EESCTTCSCTHHHHHH
T ss_pred ---HHHH---HHHHHHHHHHhcCCCceEEEEc-CCCCCCHHHHH------HHHHHhcCCeEEE-EecCcccccccHHHHH
Confidence 4599 999999999999999 99999 99999998653 3333333445555 5552 234
Q ss_pred HHhhcCeEEEecCCeE
Q 001400 371 AYELFDDVILLSEGQI 386 (1085)
Q Consensus 371 ~~~~~D~ii~L~~G~i 386 (1085)
.....+.|..+..|+.
T Consensus 326 ~~~~~~pI~~ig~Ge~ 341 (359)
T 2og2_A 326 VEELGIPVKFIGVGEA 341 (359)
T ss_dssp HHHHCCCEEEEECSSS
T ss_pred HHHhCCCEEEEeCCCC
Confidence 4456678888887764
|
| >2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.1e-17 Score=190.31 Aligned_cols=86 Identities=12% Similarity=0.090 Sum_probs=74.7
Q ss_pred Ccccc-cCchhhhhHHHHHHHHh---------CCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhH
Q 001400 301 DEMLK-GISGGQKKRLTTGELLV---------GPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPE 370 (1085)
Q Consensus 301 ~~~~~-~LSGGqkqRvsia~al~---------~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~ 370 (1085)
+..++ .+|||||||++||++|+ ++|+||+|||||++||+..+..+++.++++. .++|+++|. ++
T Consensus 259 ~~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~-----qt~i~~th~-~~ 332 (359)
T 2o5v_A 259 DFPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP-----QAIVTGTEL-AP 332 (359)
T ss_dssp TEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS-----EEEEEESSC-CT
T ss_pred CcchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC-----cEEEEEEec-cc
Confidence 44566 69999999999999999 8999999999999999999999999998642 566667774 33
Q ss_pred HHhhcCeEEEecCCeEEEecChhhH
Q 001400 371 AYELFDDVILLSEGQIVYQGPRVSV 395 (1085)
Q Consensus 371 ~~~~~D~ii~L~~G~iv~~G~~~~~ 395 (1085)
.+|++++|++|+++..|+++++
T Consensus 333 ---~~~~i~~l~~G~i~~~g~~~~~ 354 (359)
T 2o5v_A 333 ---GAALTLRAQAGRFTPVADEEMQ 354 (359)
T ss_dssp ---TCSEEEEEETTEEEECCCTTTS
T ss_pred ---cCCEEEEEECCEEEecCCHHHH
Confidence 8999999999999999988764
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B | Back alignment and structure |
|---|
Probab=99.73 E-value=2.4e-17 Score=187.79 Aligned_cols=76 Identities=20% Similarity=0.327 Sum_probs=68.6
Q ss_pred CCCCCHHHHH------HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEE
Q 001400 966 INGLSTEQRK------RLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDEL 1039 (1085)
Q Consensus 966 ~~~LS~Gqrq------rl~iA~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i 1039 (1085)
+..||||||| |+++|++|+.+|++|||||||+|||+..+..+.+.|+++.+.|.|||+|||+++ +...||++
T Consensus 246 ~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~--~~~~~d~~ 323 (339)
T 3qkt_A 246 LTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEE--LKDAADHV 323 (339)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGG--GGGGCSEE
T ss_pred hHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHH--HHHhCCEE
Confidence 3579999999 677888888999999999999999999999999999998777899999999964 56889999
Q ss_pred EEEe
Q 001400 1040 LFMK 1043 (1085)
Q Consensus 1040 l~l~ 1043 (1085)
++|.
T Consensus 324 ~~l~ 327 (339)
T 3qkt_A 324 IRIS 327 (339)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9986
|
| >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A | Back alignment and structure |
|---|
Probab=99.72 E-value=1e-20 Score=200.34 Aligned_cols=184 Identities=10% Similarity=0.054 Sum_probs=113.1
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCCCceEEEEccCCCCCCCCCHH
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVR 227 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 227 (1085)
.++++| ..+++|++++|+||||||||||+++|+|.++. +.+.+.+.+.+... ..++.++|++|++..++.+|+.
T Consensus 9 ~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~---i~~~~~~~~~~~~~-~~~~~i~~~~q~~~~~~~~~~~ 82 (207)
T 1znw_A 9 KPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPN---LHFSVSATTRAPRP-GEVDGVDYHFIDPTRFQQLIDQ 82 (207)
T ss_dssp ------------CCCEEEEECSTTSSHHHHHHHHHHHSTT---CEECCCEESSCCCT-TCCBTTTBEECCHHHHHHHHHT
T ss_pred CcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCc---eEEcccccccCCcc-cccCCCeeEecCHHHHHHHHhc
Confidence 467888 68999999999999999999999999999852 23332233322111 1235689999998888888888
Q ss_pred HHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHH------HHHhCCcccccccccC
Q 001400 228 ETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYI------MKILGLDTCADTLVGD 301 (1085)
Q Consensus 228 E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~------l~~lgL~~~~dt~vg~ 301 (1085)
+++.+.....+....+....+ .. +.++++. ++.+|+...++..+
T Consensus 83 ~~l~~~~~~~~n~~~~g~~~~-~~---------------------------~~~~~~~~~~~~~l~~~gl~~~~~~~~-- 132 (207)
T 1znw_A 83 GELLEWAEIHGGLHRSGTLAQ-PV---------------------------RAAAATGVPVLIEVDLAGARAIKKTMP-- 132 (207)
T ss_dssp TCEEEEEEEGGGTEEEEEEHH-HH---------------------------HHHHHHTCCEEEECCHHHHHHHHHHCT--
T ss_pred CCceeehhhcCchhhcCCcHH-HH---------------------------HHHHHcCCeEEEEeCHHHHHHHHHhcC--
Confidence 876432211110000000000 00 0112221 23344443333332
Q ss_pred cccccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCC----CHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCe
Q 001400 302 EMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGL----DSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDD 377 (1085)
Q Consensus 302 ~~~~~LSGGqkqRvsia~al~~~p~vlllDEptsgL----D~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ 377 (1085)
+.|| +|+.+|++++|||||+|| |+..+..+.+.++++.+..+. +++.++|+.+++..++|+
T Consensus 133 ---~~lS-----------~l~~~p~~~~LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~-tvi~vtHdl~~~~~~~d~ 197 (207)
T 1znw_A 133 ---EAVT-----------VFLAPPSWQDLQARLIGRGTETADVIQRRLDTARIELAAQGDF-DKVVVNRRLESACAELVS 197 (207)
T ss_dssp ---TSEE-----------EEEECSCHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGS-SEEEECSSHHHHHHHHHH
T ss_pred ---CcEE-----------EEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccC-cEEEECCCHHHHHHHHHH
Confidence 3466 889999999999999998 788999999999998754444 455678999999999999
Q ss_pred EEEec
Q 001400 378 VILLS 382 (1085)
Q Consensus 378 ii~L~ 382 (1085)
|++|.
T Consensus 198 i~~l~ 202 (207)
T 1znw_A 198 LLVGT 202 (207)
T ss_dssp HHC--
T ss_pred HHHhc
Confidence 99984
|
| >3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=3e-19 Score=200.14 Aligned_cols=128 Identities=9% Similarity=0.045 Sum_probs=96.9
Q ss_pred cceee-EeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCCCceEEEEccCCCCCCCCCHHHHHH
Q 001400 153 DLSGI-IRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLD 231 (1085)
Q Consensus 153 ~vs~~-i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~ 231 (1085)
|++.. +++|++++|+||||||||||+++|+|.+.+. .|. +.++||+|++.+++. |++||+.
T Consensus 81 ~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~---~G~--------------~~v~~v~qd~~~~~~-t~~e~~~ 142 (312)
T 3aez_A 81 PQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALLARW---DHH--------------PRVDLVTTDGFLYPN-AELQRRN 142 (312)
T ss_dssp CCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHHHTS---TTC--------------CCEEEEEGGGGBCCH-HHHHHTT
T ss_pred cccccCCCCCEEEEEECCCCchHHHHHHHHHhhcccc---CCC--------------CeEEEEecCccCCcc-cHHHHHH
Confidence 45443 8999999999999999999999999999763 231 368999999998888 9999985
Q ss_pred HhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCcccccCchhh
Q 001400 232 FAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQ 311 (1085)
Q Consensus 232 f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGq 311 (1085)
+... .+.... .+ ...+.++|+.++ ....++.+ ..+||||
T Consensus 143 ~~~~-~g~~~~-------------------~d---------------~~~~~~~L~~l~-~~~~~~~~-----~~lS~G~ 181 (312)
T 3aez_A 143 LMHR-KGFPES-------------------YN---------------RRALMRFVTSVK-SGSDYACA-----PVYSHLH 181 (312)
T ss_dssp CTTC-TTSGGG-------------------BC---------------HHHHHHHHHHHH-TTCSCEEE-----EEEETTT
T ss_pred HHHh-cCCChH-------------------HH---------------HHHHHHHHHHhC-CCcccCCc-----ccCChhh
Confidence 4211 111000 00 123556677777 44333433 4699999
Q ss_pred hhHHHHHHHHhCCCcEeEEeCCCCCCCH
Q 001400 312 KKRLTTGELLVGPARVLFMDEISNGLDS 339 (1085)
Q Consensus 312 kqRvsia~al~~~p~vlllDEptsgLD~ 339 (1085)
+||+++|++++.+|+||++|||+..+|+
T Consensus 182 ~qRv~~a~al~~~p~ilIlDep~~~~d~ 209 (312)
T 3aez_A 182 YDIIPGAEQVVRHPDILILEGLNVLQTG 209 (312)
T ss_dssp TEEEEEEEEEECSCSEEEEECTTTTCCC
T ss_pred hhhhhhHHHhccCCCEEEECCccccCCc
Confidence 9999999999999999999999999986
|
| >2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.6e-19 Score=211.18 Aligned_cols=179 Identities=15% Similarity=0.136 Sum_probs=137.9
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCc---cCCCC--------CCCceEEEEcc
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGH---GFKEF--------VPPRTSAYVSQ 216 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~---~~~~~--------~~~~~~~yv~Q 216 (1085)
..+|+++ +.|.+|++++|+|||||||||||++|+|..+++ .|.|.++|. ++.++ ..++.++|++|
T Consensus 145 ~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~---~G~i~~~G~r~~ev~~~~~~~~~~~~l~r~i~~v~q 220 (438)
T 2dpy_A 145 VRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRAD---VIVVGLIGERGREVKDFIENILGPDGRARSVVIAAP 220 (438)
T ss_dssp CHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCS---EEEEEEESCCHHHHHHHHHTTTHHHHHHTEEEEEEC
T ss_pred ceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCC---eEEEEEeceecHHHHHHHHhhccccccCceEEEEEC
Confidence 5699999 999999999999999999999999999998876 899999997 44321 12467999999
Q ss_pred C-CCCCCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccc
Q 001400 217 Q-DWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCA 295 (1085)
Q Consensus 217 ~-d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~ 295 (1085)
+ +..++.+||.+|+.+.++.... . + .+. ....
T Consensus 221 ~~~~~~~~~~v~~~~~~~ae~~~~--------------~--~----~~v---------------------------~~~l 253 (438)
T 2dpy_A 221 ADVSPLLRMQGAAYATRIAEDFRD--------------R--G----QHV---------------------------LLIM 253 (438)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHT--------------T--T----CEE---------------------------EEEE
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHh--------------C--C----CCH---------------------------HHHH
Confidence 5 5567788999999876432100 0 0 000 0001
Q ss_pred cccccCcccccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhc--cCCE-----EEEEEecCh
Q 001400 296 DTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRA--LDGT-----TVISLLQPA 368 (1085)
Q Consensus 296 dt~vg~~~~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~--~~~t-----~ii~~~q~~ 368 (1085)
| .+..+|||| |||+|| +++|++ |+|||+.+...+.+.+.++.+. .+++ +|+..+|+.
T Consensus 254 d------~l~~lS~g~-qrvslA---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl 317 (438)
T 2dpy_A 254 D------SLTRYAMAQ-REIALA---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQ 317 (438)
T ss_dssp E------CHHHHHHHH-HHHHHH---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCS
T ss_pred H------hHHHHHHHH-HHHHHH---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCc
Confidence 1 134599999 999999 888887 9999999999999999887542 1243 566677777
Q ss_pred hHHHhhcCeEEEecCCeEEEecChhhH
Q 001400 369 PEAYELFDDVILLSEGQIVYQGPRVSV 395 (1085)
Q Consensus 369 ~~~~~~~D~ii~L~~G~iv~~G~~~~~ 395 (1085)
. ..++|++++|.+|+++..|+..++
T Consensus 318 ~--~~iad~v~~l~dG~Ivl~~~~~~~ 342 (438)
T 2dpy_A 318 Q--DPIADSARAILDGHIVLSRRLAEA 342 (438)
T ss_dssp C--CHHHHHHHHHSSEEEEECHHHHHT
T ss_pred c--chhhceEEEEeCcEEEEeCCHHHc
Confidence 6 678999999999999999987654
|
| >2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.4e-19 Score=211.65 Aligned_cols=186 Identities=15% Similarity=0.081 Sum_probs=141.0
Q ss_pred ccccccccccC-CeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCc---cCCh--------
Q 001400 830 VELKQEGVLED-RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGY---PKRQ-------- 897 (1085)
Q Consensus 830 ~~~~~~~~~~~-~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~---~~~~-------- 897 (1085)
.+.++..+.++ +..+|+++ +.|.+|++++|+|+||||||||+++|+|... +..|.|.++|. +...
T Consensus 132 l~~~~v~~~~~tg~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~--~~~G~i~~~G~r~~ev~~~~~~~~~~ 208 (438)
T 2dpy_A 132 LQRTPIEHVLDTGVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTR--ADVIVVGLIGERGREVKDFIENILGP 208 (438)
T ss_dssp TTSCCCCSBCCCSCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSC--CSEEEEEEESCCHHHHHHHHHTTTHH
T ss_pred eEEeccceecCCCceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccC--CCeEEEEEeceecHHHHHHHHhhccc
Confidence 44555555555 56799999 9999999999999999999999999999766 45899999998 3322
Q ss_pred hcccceEEEEccC-CCCCCCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHH
Q 001400 898 ETFARISGYCEQN-DIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKR 976 (1085)
Q Consensus 898 ~~~~~~~gy~~Q~-~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqr 976 (1085)
...++.++|++|+ +..++.+|+.+|+.+.+....... .++ ..+.+. ...||+|| ||
T Consensus 209 ~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~ae~~~~~~----------~~v------~~~ld~------l~~lS~g~-qr 265 (438)
T 2dpy_A 209 DGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRG----------QHV------LLIMDS------LTRYAMAQ-RE 265 (438)
T ss_dssp HHHHTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTT----------CEE------EEEEEC------HHHHHHHH-HH
T ss_pred cccCceEEEEECCCCCHHHHHHHHHHHHHHHHHHHhCC----------CCH------HHHHHh------HHHHHHHH-HH
Confidence 2356789999995 444567889999877543210000 000 111121 24699999 99
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH---C-Cc-----eEEEEecCccHHHHHhcCEEEEEecCcE
Q 001400 977 LTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVN---T-GR-----TIVCTIHQPSIDIFESFDELLFMKRGGE 1047 (1085)
Q Consensus 977 l~iA~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~---~-g~-----tvi~~~H~~~~~~~~~~d~il~l~~gG~ 1047 (1085)
++|| +.+|++ |+|||+.....+.++++++.+ + |. ||++++||++ ...+|++++|.+ |+
T Consensus 266 vslA---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~---~~iad~v~~l~d-G~ 332 (438)
T 2dpy_A 266 IALA---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ---DPIADSARAILD-GH 332 (438)
T ss_dssp HHHH---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC---CHHHHHHHHHSS-EE
T ss_pred HHHH---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc---chhhceEEEEeC-cE
Confidence 9999 888988 999999999999999999865 3 64 9999999987 356899999974 78
Q ss_pred EEEecCC
Q 001400 1048 LIYAGPL 1054 (1085)
Q Consensus 1048 ~~~~g~~ 1054 (1085)
++..|+.
T Consensus 333 Ivl~~~~ 339 (438)
T 2dpy_A 333 IVLSRRL 339 (438)
T ss_dssp EEECHHH
T ss_pred EEEeCCH
Confidence 9888754
|
| >2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.70 E-value=3.1e-17 Score=186.51 Aligned_cols=80 Identities=13% Similarity=0.159 Sum_probs=71.5
Q ss_pred CCCHHHHHHHHHHHHHh---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCE
Q 001400 968 GLSTEQRKRLTIAVELV---------ANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDE 1038 (1085)
Q Consensus 968 ~LS~Gqrqrl~iA~aL~---------~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~ 1038 (1085)
.||+|||||++||++|+ .+|+||||||||++||+..+..+++.|+++. .|+|++||. + . .+|+
T Consensus 265 ~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~---qt~i~~th~-~-~---~~~~ 336 (359)
T 2o5v_A 265 YASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP---QAIVTGTEL-A-P---GAAL 336 (359)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS---EEEEEESSC-C-T---TCSE
T ss_pred hCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC---cEEEEEEec-c-c---cCCE
Confidence 59999999999999999 8999999999999999999999999998863 799999994 4 2 7899
Q ss_pred EEEEecCcEEEEecCCCC
Q 001400 1039 LLFMKRGGELIYAGPLGS 1056 (1085)
Q Consensus 1039 il~l~~gG~~~~~g~~~~ 1056 (1085)
+++|++ |+++..|+..+
T Consensus 337 i~~l~~-G~i~~~g~~~~ 353 (359)
T 2o5v_A 337 TLRAQA-GRFTPVADEEM 353 (359)
T ss_dssp EEEEET-TEEEECCCTTT
T ss_pred EEEEEC-CEEEecCCHHH
Confidence 999985 78999887653
|
| >2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A | Back alignment and structure |
|---|
Probab=99.69 E-value=4e-18 Score=192.78 Aligned_cols=133 Identities=14% Similarity=0.167 Sum_probs=99.7
Q ss_pred ecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCCCceEEEEccCCCCCCCCCHHHH
Q 001400 150 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRET 229 (1085)
Q Consensus 150 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~ 229 (1085)
+++++|+.+++|++++|+|||||||||||++|+|.+++. +|.|+++|.+ +.. .+..
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~---~g~i~i~~~~--e~~--------------~~~~----- 215 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKE---ERIISIEDTE--EIV--------------FKHH----- 215 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTT---SCEEEEESSC--CCC--------------CSSC-----
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCC---CcEEEECCee--ccc--------------cccc-----
Confidence 899999999999999999999999999999999999876 8999999853 110 0000
Q ss_pred HHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCcccccCch
Q 001400 230 LDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISG 309 (1085)
Q Consensus 230 l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSG 309 (1085)
+ .. . ..+ .+ |
T Consensus 216 -----~-----~~----------------------------------------------i-------~~~-----~g--g 225 (330)
T 2pt7_A 216 -----K-----NY----------------------------------------------T-------QLF-----FG--G 225 (330)
T ss_dssp -----S-----SE----------------------------------------------E-------EEE-----CB--T
T ss_pred -----h-----hE----------------------------------------------E-------EEE-----eC--C
Confidence 0 00 0 000 01 8
Q ss_pred hhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEecCCeE
Q 001400 310 GQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQI 386 (1085)
Q Consensus 310 GqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~~G~i 386 (1085)
||+||++||+||..+|+++++||||+. ++.+.|+.+.. +++++++++|... +.+.+|++++|.+|+.
T Consensus 226 g~~~r~~la~aL~~~p~ilildE~~~~-------e~~~~l~~~~~--g~~tvi~t~H~~~-~~~~~dri~~l~~g~~ 292 (330)
T 2pt7_A 226 NITSADCLKSCLRMRPDRIILGELRSS-------EAYDFYNVLCS--GHKGTLTTLHAGS-SEEAFIRLANMSSSNS 292 (330)
T ss_dssp TBCHHHHHHHHTTSCCSEEEECCCCST-------HHHHHHHHHHT--TCCCEEEEEECSS-HHHHHHHHHHHHHTSG
T ss_pred ChhHHHHHHHHhhhCCCEEEEcCCChH-------HHHHHHHHHhc--CCCEEEEEEcccH-HHHHhhhheehhcCCc
Confidence 999999999999999999999999982 35566666542 4433344445544 7889999999988864
|
| >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=6.1e-18 Score=189.20 Aligned_cols=182 Identities=15% Similarity=0.133 Sum_probs=113.1
Q ss_pred EEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeee-EEEEcCccCChhcccceEEEEccCCCCCCCCCHHH
Q 001400 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEG-DIYISGYPKRQETFARISGYCEQNDIHSPGLTVLE 921 (1085)
Q Consensus 843 ~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G-~i~i~g~~~~~~~~~~~~gy~~Q~~~~~~~~tv~e 921 (1085)
.+|+++++.+++|++++|+|+||||||||++.|+|... +..| .+.+.+.........+++.++.|... +++.+
T Consensus 23 ~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~--~~~G~~v~~~~~e~~~~~~~~r~~~~~~~~~----~~~~~ 96 (296)
T 1cr0_A 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWG--TAMGKKVGLAMLEESVEETAEDLIGLHNRVR----LRQSD 96 (296)
T ss_dssp TTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHH--HTSCCCEEEEESSSCHHHHHHHHHHHHTTCC----GGGCH
T ss_pred HHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHH--HHcCCeEEEEeCcCCHHHHHHHHHHHHcCCC----hhhcc
Confidence 35789999999999999999999999999999999643 1235 55443333222222223333333221 12223
Q ss_pred HHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHH-HHHHHHHHHHhcCCCEEEEeCCCC---
Q 001400 922 SLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQ-RKRLTIAVELVANPSIVFMDEPTS--- 997 (1085)
Q Consensus 922 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gq-rqrl~iA~aL~~~p~illlDEPts--- 997 (1085)
++.... + ...+..+.++++++...+. +.+. +..+|.+| +||+. |+++..+|++||+||||+
T Consensus 97 ~l~~~~-~------~~~~~~~~~~~~l~~~~l~-i~~~------~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~ 161 (296)
T 1cr0_A 97 SLKREI-I------ENGKFDQWFDELFGNDTFH-LYDS------FAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVS 161 (296)
T ss_dssp HHHHHH-H------HHTHHHHHHHHHHSSSCEE-EECC------CCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC----
T ss_pred ccccCC-C------CHHHHHHHHHHHhccCCEE-EECC------CCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCC
Confidence 333221 0 1111122233333211221 1111 13589998 66666 999999999999999999
Q ss_pred C---CCH-HHHHHHHHHHHHHHHC-CceEEEEecCc--cH-------------------HHHHhcCEEEEEecC
Q 001400 998 G---LDA-RAAAIVMRTVRNIVNT-GRTIVCTIHQP--SI-------------------DIFESFDELLFMKRG 1045 (1085)
Q Consensus 998 g---LD~-~~~~~i~~~l~~~~~~-g~tvi~~~H~~--~~-------------------~~~~~~d~il~l~~g 1045 (1085)
+ +|. .....+++.|++++++ |.|||+++|+. +. .+...||++++|.+|
T Consensus 162 ~~~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~ 235 (296)
T 1cr0_A 162 ASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERN 235 (296)
T ss_dssp -------CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecC
Confidence 5 555 6778899999999754 99999999995 20 356689999999875
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B | Back alignment and structure |
|---|
Probab=99.66 E-value=7.7e-16 Score=175.30 Aligned_cols=78 Identities=27% Similarity=0.333 Sum_probs=65.9
Q ss_pred cccccCchhhhh------HHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhc
Q 001400 302 EMLKGISGGQKK------RLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELF 375 (1085)
Q Consensus 302 ~~~~~LSGGqkq------Rvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~ 375 (1085)
..+..||||||| |+++|++++.+|++|+|||||+|||+..+..+++.|+++... +.+ |+.++|+ +++.+.+
T Consensus 244 ~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~-~~~-vi~~sH~-~~~~~~~ 320 (339)
T 3qkt_A 244 RPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKK-IPQ-VILVSHD-EELKDAA 320 (339)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGG-SSE-EEEEESC-GGGGGGC
T ss_pred CChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhc-CCE-EEEEECh-HHHHHhC
Confidence 345679999999 677888899999999999999999999999999999987653 444 5556677 5688999
Q ss_pred CeEEEec
Q 001400 376 DDVILLS 382 (1085)
Q Consensus 376 D~ii~L~ 382 (1085)
|++++|.
T Consensus 321 d~~~~l~ 327 (339)
T 3qkt_A 321 DHVIRIS 327 (339)
T ss_dssp SEEEEEE
T ss_pred CEEEEEE
Confidence 9999985
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* | Back alignment and structure |
|---|
Probab=99.66 E-value=2.3e-16 Score=156.54 Aligned_cols=76 Identities=20% Similarity=0.303 Sum_probs=69.3
Q ss_pred CCCCCHHHHHHHHHH------HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEE
Q 001400 966 INGLSTEQRKRLTIA------VELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDEL 1039 (1085)
Q Consensus 966 ~~~LS~Gqrqrl~iA------~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i 1039 (1085)
+..||||||||++|| |+|+.+|++|||||||+|||+.++..+.+.|+++.+.|.|||++||++. +...+|++
T Consensus 55 ~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~--~~~~~d~i 132 (148)
T 1f2t_B 55 LTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEE--LKDAADHV 132 (148)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCGG--GGGGCSEE
T ss_pred hhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChHH--HHHhCCEE
Confidence 357999999999876 8999999999999999999999999999999998767899999999973 56789999
Q ss_pred EEEe
Q 001400 1040 LFMK 1043 (1085)
Q Consensus 1040 l~l~ 1043 (1085)
++|+
T Consensus 133 i~l~ 136 (148)
T 1f2t_B 133 IRIS 136 (148)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9994
|
| >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=2.7e-17 Score=183.97 Aligned_cols=186 Identities=15% Similarity=0.068 Sum_probs=110.0
Q ss_pred ceeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceee-EEEECCccCCCCCCCceEEEEccCCCCCCCCC
Q 001400 147 KLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSG-KITYNGHGFKEFVPPRTSAYVSQQDWQVAEMT 225 (1085)
Q Consensus 147 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G-~i~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lT 225 (1085)
...+|+++++.+++|++++|+||||||||||++.|+|.+.+. +| .|.|.+.+.......+.+.++.|+.. ++
T Consensus 21 g~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~---~G~~v~~~~~e~~~~~~~~r~~~~~~~~~----~~ 93 (296)
T 1cr0_A 21 GCTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTA---MGKKVGLAMLEESVEETAEDLIGLHNRVR----LR 93 (296)
T ss_dssp SCTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHT---SCCCEEEEESSSCHHHHHHHHHHHHTTCC----GG
T ss_pred CHHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHH---cCCeEEEEeCcCCHHHHHHHHHHHHcCCC----hh
Confidence 456899999999999999999999999999999999998653 46 55443322110000000011111000 01
Q ss_pred HHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCcccc
Q 001400 226 VRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLK 305 (1085)
Q Consensus 226 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 305 (1085)
+.+++... . +...+....++.+++..++.. .+ ...
T Consensus 94 ~~~~l~~~--------------~------------------------~~~~~~~~~~~~~l~~~~l~i-~~------~~~ 128 (296)
T 1cr0_A 94 QSDSLKRE--------------I------------------------IENGKFDQWFDELFGNDTFHL-YD------SFA 128 (296)
T ss_dssp GCHHHHHH--------------H------------------------HHHTHHHHHHHHHHSSSCEEE-EC------CCC
T ss_pred hccccccC--------------C------------------------CCHHHHHHHHHHHhccCCEEE-EC------CCC
Confidence 11111100 0 000011112333333222211 11 113
Q ss_pred cCchhh-hhHHHHHHHHhCCCcEeEEeCCCC---C---CCH-HHHHHHHHHHHHHHhccCCEEEEEEecCh--h------
Q 001400 306 GISGGQ-KKRLTTGELLVGPARVLFMDEISN---G---LDS-STTYQIIKYLKHSTRALDGTTVISLLQPA--P------ 369 (1085)
Q Consensus 306 ~LSGGq-kqRvsia~al~~~p~vlllDEpts---g---LD~-~~~~~i~~~l~~~~~~~~~t~ii~~~q~~--~------ 369 (1085)
.+|.+| +||+. |+++..+|+++++||||+ + +|. .....+.+.|+++++..+.++|+ ++|.. .
T Consensus 129 ~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~~~d~~~~~~~i~~~L~~la~~~~~~vi~-vsh~~r~~~~~~~~ 206 (296)
T 1cr0_A 129 EAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVV-ICHLKNPDKGKAHE 206 (296)
T ss_dssp SCCHHHHHHHHH-HHHHTTCCSEEEEEEEC-----------CHHHHHHHHHHHHHHHHHCCEEEE-EEECC---------
T ss_pred CCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEE-EEecCccccccccc
Confidence 588888 67777 999999999999999999 5 455 66788999999998766555555 55653 3
Q ss_pred --------------HHHhhcCeEEEecCCeE
Q 001400 370 --------------EAYELFDDVILLSEGQI 386 (1085)
Q Consensus 370 --------------~~~~~~D~ii~L~~G~i 386 (1085)
.+.+.||+|++|++|+.
T Consensus 207 ~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 207 EGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp --------CCC---CHHHHCSEEEEEEEC--
T ss_pred cCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 67889999999998874
|
| >2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=2.4e-17 Score=179.01 Aligned_cols=140 Identities=16% Similarity=0.057 Sum_probs=87.1
Q ss_pred cceeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCCCceEEEEccCCCCCCCCC
Q 001400 146 SKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMT 225 (1085)
Q Consensus 146 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lT 225 (1085)
..+.+|+|+|+.+++|++++|+||||||||||+++|+|.++ .+.++ ...+.++|++|++ +++.+|
T Consensus 10 ~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~lG-------~~~~~-------~~~~~i~~v~~d~-~~~~l~ 74 (245)
T 2jeo_A 10 GVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELLG-------QNEVE-------QRQRKVVILSQDR-FYKVLT 74 (245)
T ss_dssp -------------CCSEEEEEECSTTSSHHHHHHHHHHHHT-------GGGSC-------GGGCSEEEEEGGG-GBCCCC
T ss_pred CCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHhc-------hhccc-------ccCCceEEEeCCc-CccccC
Confidence 34579999999999999999999999999999999999873 22222 1245789999996 577899
Q ss_pred HHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCcccc
Q 001400 226 VRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLK 305 (1085)
Q Consensus 226 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 305 (1085)
+.|++.+.......... + ..+ ...+...|+.+ .+..+.. ..
T Consensus 75 ~~~~~~~~~~~~~~~~~-~----------------~~~---------------~~~~~~~L~~l--~~~~~~~-----~~ 115 (245)
T 2jeo_A 75 AEQKAKALKGQYNFDHP-D----------------AFD---------------NDLMHRTLKNI--VEGKTVE-----VP 115 (245)
T ss_dssp HHHHHHHHTTCCCTTSG-G----------------GBC---------------HHHHHHHHHHH--HTTCCEE-----EC
T ss_pred HhHhhhhhccCCCCCCc-c----------------ccc---------------HHHHHHHHHHH--HCCCCee-----cc
Confidence 99998765332111000 0 000 01122233322 3333333 34
Q ss_pred cCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHH
Q 001400 306 GISGGQKKRLTTGELLVGPARVLFMDEISNGLDSS 340 (1085)
Q Consensus 306 ~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~ 340 (1085)
.+|+||+||+.+ ++++.+|+++++|||...+|..
T Consensus 116 ~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~~ 149 (245)
T 2jeo_A 116 TYDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQE 149 (245)
T ss_dssp CEETTTTEECSS-CEEECCCSEEEEECTTTTTSHH
T ss_pred cccccccCccCc-eEEecCCCEEEEeCccccccHH
Confidence 699999999988 5888899999999998888764
|
| >4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.65 E-value=2.5e-16 Score=189.55 Aligned_cols=78 Identities=17% Similarity=0.195 Sum_probs=66.9
Q ss_pred ccccC-chhhhhHHHHHHHHhCCC--cEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEE
Q 001400 303 MLKGI-SGGQKKRLTTGELLVGPA--RVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVI 379 (1085)
Q Consensus 303 ~~~~L-SGGqkqRvsia~al~~~p--~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii 379 (1085)
.+..| ||||||||+||++|+.+| ++|+|||||+|||..++..|.+.|+++++ +. +|+.++|... +...+|+++
T Consensus 393 ~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~--~~-~vi~itH~~~-~~~~~d~~~ 468 (517)
T 4ad8_A 393 PLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD--TR-QVLVVTHLAQ-IAARAHHHY 468 (517)
T ss_dssp BSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH--HS-EEEEECCCHH-HHHHSSEEE
T ss_pred cHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC--CC-EEEEEecCHH-HHHhCCEEE
Confidence 34567 999999999999999999 99999999999999999999999999875 34 4555777755 556799999
Q ss_pred EecCC
Q 001400 380 LLSEG 384 (1085)
Q Consensus 380 ~L~~G 384 (1085)
+|++|
T Consensus 469 ~~~~~ 473 (517)
T 4ad8_A 469 KVEKQ 473 (517)
T ss_dssp EEECC
T ss_pred EEecc
Confidence 99655
|
| >2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B* | Back alignment and structure |
|---|
Probab=99.64 E-value=9.2e-18 Score=214.14 Aligned_cols=155 Identities=17% Similarity=0.190 Sum_probs=113.1
Q ss_pred CCeEEeeeeeEEEeC-------CeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCChhcccceEEEEccCCC
Q 001400 840 DRLQLLVNVTGAFRP-------GVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDI 912 (1085)
Q Consensus 840 ~~~~~L~~vs~~i~~-------Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gy~~Q~~~ 912 (1085)
++..+++||++.+.+ |++++|+|||||||||||++| |... + .++..+||||+..
T Consensus 767 ~~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~--~----------------~aqiG~~Vpq~~~ 827 (1022)
T 2o8b_B 767 GDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLA--V----------------MAQMGCYVPAEVC 827 (1022)
T ss_dssp CCCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHH--H----------------HHTTTCCEESSEE
T ss_pred CCceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHH--H----------------HhheeEEeccCcC
Confidence 345689999999987 999999999999999999999 8543 1 1222238999753
Q ss_pred CCCCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q 001400 913 HSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFM 992 (1085)
Q Consensus 913 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illl 992 (1085)
.+|+.|++.. +. ++.+.... +.+.+|+|+++ +++|++++.+|+++||
T Consensus 828 ---~l~v~d~I~~----ri--------------------g~~d~~~~-----~~stf~~em~~-~a~al~la~~~sLlLL 874 (1022)
T 2o8b_B 828 ---RLTPIDRVFT----RL--------------------GASDRIMS-----GESTFFVELSE-TASILMHATAHSLVLV 874 (1022)
T ss_dssp ---EECCCSBEEE----EC--------------------C--------------CHHHHHHHH-HHHHHHHCCTTCEEEE
T ss_pred ---CCCHHHHHHH----Hc--------------------CCHHHHhh-----chhhhHHHHHH-HHHHHHhCCCCcEEEE
Confidence 3455554421 11 11110000 12357777765 9999999999999999
Q ss_pred eCCCCCCCHHH-HHHHHHHHHHHHHC-CceEEEEecCccHHHHHhcCEEEEEecCcEEE
Q 001400 993 DEPTSGLDARA-AAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELI 1049 (1085)
Q Consensus 993 DEPtsgLD~~~-~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~ 1049 (1085)
||||+|+|+.. ...++.+++.+.++ |.++|++||+++. ....+|++.++. |++.
T Consensus 875 DEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el-~~~~~d~~~v~~--g~~~ 930 (1022)
T 2o8b_B 875 DELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSL-VEDYSQNVAVRL--GHMA 930 (1022)
T ss_dssp ECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHH-HHHTSSCSSEEE--EEEE
T ss_pred ECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHH-HHHhCCcceeec--CeEE
Confidence 99999999987 46688999999876 9999999999763 556689888874 5666
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.63 E-value=4.5e-17 Score=177.93 Aligned_cols=131 Identities=16% Similarity=0.264 Sum_probs=94.0
Q ss_pred EEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCee-eeEEEEcCccCChhcccceEEEEccCCCCCCCCCHHH
Q 001400 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGII-EGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLE 921 (1085)
Q Consensus 843 ~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~-~G~i~i~g~~~~~~~~~~~~gy~~Q~~~~~~~~tv~e 921 (1085)
.+|+++| +++|++++|+||||||||||+++|+|... +. +|+|.++|.++. |++|....+
T Consensus 15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~--~~~~G~I~~~g~~i~---------~~~~~~~~~------- 74 (261)
T 2eyu_A 15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYIN--QTKSYHIITIEDPIE---------YVFKHKKSI------- 74 (261)
T ss_dssp THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHH--HHCCCEEEEEESSCC---------SCCCCSSSE-------
T ss_pred HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCC--CCCCCEEEEcCCcce---------eecCCccee-------
Confidence 3678998 99999999999999999999999999754 34 799999987642 333321100
Q ss_pred HHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCH
Q 001400 922 SLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDA 1001 (1085)
Q Consensus 922 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEPtsgLD~ 1001 (1085)
.. . +.+++.. ..| |++||++|..+|++|++|||| |+
T Consensus 75 -------v~---q--------------~~~gl~~-----------~~l------~~~la~aL~~~p~illlDEp~---D~ 110 (261)
T 2eyu_A 75 -------VN---Q--------------REVGEDT-----------KSF------ADALRAALREDPDVIFVGEMR---DL 110 (261)
T ss_dssp -------EE---E--------------EEBTTTB-----------SCH------HHHHHHHHHHCCSEEEESCCC---SH
T ss_pred -------ee---H--------------HHhCCCH-----------HHH------HHHHHHHHhhCCCEEEeCCCC---CH
Confidence 00 0 0111110 123 899999999999999999999 98
Q ss_pred HHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEe
Q 001400 1002 RAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMK 1043 (1085)
Q Consensus 1002 ~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~ 1043 (1085)
++...+ ++. +..|.+|++|+|+.+ ....+|+++.|.
T Consensus 111 ~~~~~~---l~~-~~~g~~vl~t~H~~~--~~~~~dri~~l~ 146 (261)
T 2eyu_A 111 ETVETA---LRA-AETGHLVFGTLHTNT--AIDTIHRIVDIF 146 (261)
T ss_dssp HHHHHH---HHH-HHTTCEEEEEECCSS--HHHHHHHHHHTS
T ss_pred HHHHHH---HHH-HccCCEEEEEeCcch--HHHHHHHHhhhc
Confidence 886544 443 357999999999976 456677765553
|
| >3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=3.9e-18 Score=191.04 Aligned_cols=158 Identities=12% Similarity=0.030 Sum_probs=108.7
Q ss_pred EeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCChhcccceEEEEccCCCCCCCCCHHHHHHHhhhhcC
Q 001400 852 FRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRL 931 (1085)
Q Consensus 852 i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gy~~Q~~~~~~~~tv~e~l~~~~~~~~ 931 (1085)
+++|+++||+|+||||||||+++|+|...+ ..| . +.++|++|++.+++. |++||+.+... +
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~--~~G------~--------~~v~~v~qd~~~~~~-t~~e~~~~~~~-~- 147 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLAR--WDH------H--------PRVDLVTTDGFLYPN-AELQRRNLMHR-K- 147 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHT--STT------C--------CCEEEEEGGGGBCCH-HHHHHTTCTTC-T-
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhccc--cCC------C--------CeEEEEecCccCCcc-cHHHHHHHHHh-c-
Confidence 789999999999999999999999996542 112 1 357999999988888 99999864221 1
Q ss_pred CCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHH
Q 001400 932 PSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTV 1011 (1085)
Q Consensus 932 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEPtsgLD~~~~~~i~~~l 1011 (1085)
........+.+.++++.++ .+..+... ..||+||+||+++|++++.+|+|||||||++.+|+.. ..+
T Consensus 148 --g~~~~~d~~~~~~~L~~l~-~~~~~~~~-----~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~-----~~l 214 (312)
T 3aez_A 148 --GFPESYNRRALMRFVTSVK-SGSDYACA-----PVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPT-----LMV 214 (312)
T ss_dssp --TSGGGBCHHHHHHHHHHHH-TTCSCEEE-----EEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSS-----CCG
T ss_pred --CCChHHHHHHHHHHHHHhC-CCcccCCc-----ccCChhhhhhhhhHHHhccCCCEEEECCccccCCcch-----HHH
Confidence 1111122344567777776 43332222 3699999999999999999999999999999998521 112
Q ss_pred HHHHHCCceEEEEecCccHHHHHhcCEEEEEec
Q 001400 1012 RNIVNTGRTIVCTIHQPSIDIFESFDELLFMKR 1044 (1085)
Q Consensus 1012 ~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~ 1044 (1085)
.++ -+ .+|+++|+.+.......+|.+.+.+
T Consensus 215 ~~~--~D-~~I~V~a~~~~~~~R~i~R~~~~rd 244 (312)
T 3aez_A 215 SDL--FD-FSLYVDARIEDIEQWYVSRFLAMRT 244 (312)
T ss_dssp GGG--CS-EEEEEEECHHHHHHHHHHHHHHHTT
T ss_pred HHh--cC-cEEEEECCHHHHHHHHHHHHHHHHh
Confidence 222 13 3466677655433344556555543
|
| >2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=2.8e-17 Score=178.58 Aligned_cols=155 Identities=10% Similarity=-0.008 Sum_probs=97.0
Q ss_pred CCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCChhcccceEEEEccCCCCCCCCCH
Q 001400 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTV 919 (1085)
Q Consensus 840 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gy~~Q~~~~~~~~tv 919 (1085)
++..+|+||||++++|+++||+||||||||||+++|+|.. |.+.++ ..++.++|++|++ +++.+|+
T Consensus 10 ~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l------G~~~~~-------~~~~~i~~v~~d~-~~~~l~~ 75 (245)
T 2jeo_A 10 GVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL------GQNEVE-------QRQRKVVILSQDR-FYKVLTA 75 (245)
T ss_dssp -------------CCSEEEEEECSTTSSHHHHHHHHHHHH------TGGGSC-------GGGCSEEEEEGGG-GBCCCCH
T ss_pred CCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh------chhccc-------ccCCceEEEeCCc-CccccCH
Confidence 4567999999999999999999999999999999999843 222222 2356789999985 6678899
Q ss_pred HHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCC
Q 001400 920 LESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGL 999 (1085)
Q Consensus 920 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEPtsgL 999 (1085)
.+++.+......... ......+.+.+.++.+ .+..+.. +..||+||+||+.+ ++++.+|+++|||||....
T Consensus 76 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~L~~l--~~~~~~~-----~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~ 146 (245)
T 2jeo_A 76 EQKAKALKGQYNFDH-PDAFDNDLMHRTLKNI--VEGKTVE-----VPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFY 146 (245)
T ss_dssp HHHHHHHTTCCCTTS-GGGBCHHHHHHHHHHH--HTTCCEE-----ECCEETTTTEECSS-CEEECCCSEEEEECTTTTT
T ss_pred hHhhhhhccCCCCCC-cccccHHHHHHHHHHH--HCCCCee-----cccccccccCccCc-eEEecCCCEEEEeCccccc
Confidence 999876432211111 1111112233444432 2222222 24699999999988 5888899999999999888
Q ss_pred CHHHHHHHHHHHHHHHHCCceEEEEecC
Q 001400 1000 DARAAAIVMRTVRNIVNTGRTIVCTIHQ 1027 (1085)
Q Consensus 1000 D~~~~~~i~~~l~~~~~~g~tvi~~~H~ 1027 (1085)
|.. +.++ .+.+|++++|+
T Consensus 147 ~~~--------l~~~--~~~~i~v~th~ 164 (245)
T 2jeo_A 147 SQE--------IRDM--FHLRLFVDTDS 164 (245)
T ss_dssp SHH--------HHTT--CSEEEEEECCH
T ss_pred cHH--------HHHh--cCeEEEEECCH
Confidence 864 2222 37899999997
|
| >3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=6.8e-16 Score=194.50 Aligned_cols=148 Identities=15% Similarity=0.080 Sum_probs=103.3
Q ss_pred CeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhh--------CCCCCCeeeeEEEEcCccCChhcccceEEEEccCCC
Q 001400 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLA--------GRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDI 912 (1085)
Q Consensus 841 ~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~--------g~~~~~~~~G~i~i~g~~~~~~~~~~~~gy~~Q~~~ 912 (1085)
...+++|+++.+.+|++++|+|||||||||||++++ |..- +..+. .++.+ +.
T Consensus 648 ~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~v--pa~~~---------------~~~~~---d~ 707 (934)
T 3thx_A 648 IAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFV--PCESA---------------EVSIV---DC 707 (934)
T ss_dssp CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCB--SEEEE---------------EEECC---SE
T ss_pred ceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcc--ccccc---------------cchHH---HH
Confidence 456899999999999999999999999999999994 3211 01110 01100 00
Q ss_pred CCCCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHH--hcCCCEE
Q 001400 913 HSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVEL--VANPSIV 990 (1085)
Q Consensus 913 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL--~~~p~il 990 (1085)
.+ ..+++. +.. ..++|++++++..+|++| +.+|+++
T Consensus 708 i~----------------------------------~~ig~~---d~l-----~~~lStf~~e~~~~a~il~~a~~~sLl 745 (934)
T 3thx_A 708 IL----------------------------------ARVGAG---DSQ-----LKGVSTFMAEMLETASILRSATKDSLI 745 (934)
T ss_dssp EE----------------------------------EECC-----------------CHHHHHHHHHHHHHHHCCTTCEE
T ss_pred HH----------------------------------HhcCch---hhH-----HHhHhhhHHHHHHHHHHHHhccCCcEE
Confidence 00 001111 111 135788888888888888 9999999
Q ss_pred EEeCCCCCCCHHHHHHH-HHHHHHHHH-CCceEEEEecCccHHHHHhcCEEEEEecCcEEEEecC
Q 001400 991 FMDEPTSGLDARAAAIV-MRTVRNIVN-TGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGP 1053 (1085)
Q Consensus 991 llDEPtsgLD~~~~~~i-~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~ 1053 (1085)
||||||+|+|+.....+ +.+++.+.+ .|.|+|++||+.+ +.+.+|++..+.+ |++.+.++
T Consensus 746 LLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~e--l~~lad~~~~v~n-g~v~~~~~ 807 (934)
T 3thx_A 746 IIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHE--LTALANQIPTVNN-LHVTALTT 807 (934)
T ss_dssp EEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGG--GGGGGGTCTTEEE-EEEEEEEE
T ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHH--HHHHhcccceeEe-eEEEEEec
Confidence 99999999999988777 777787776 4999999999964 5678899888875 56665443
|
| >2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=4e-17 Score=185.28 Aligned_cols=186 Identities=12% Similarity=0.113 Sum_probs=126.9
Q ss_pred cccccccccC-CeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCCh----------hc
Q 001400 831 ELKQEGVLED-RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ----------ET 899 (1085)
Q Consensus 831 ~~~~~~~~~~-~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~----------~~ 899 (1085)
+.++..+.++ +..+|+++ +.|.+|+++||+|+||||||||+++|+|... +..|.|.+.|.+... ..
T Consensus 47 ~~~~l~~~~~tg~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~--~~~g~i~~~G~~~~ev~~~i~~~~~~~ 123 (347)
T 2obl_A 47 LRQVIDQPFILGVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGAS--ADIIVLALIGERGREVNEFLALLPQST 123 (347)
T ss_dssp TCCCCCSEECCSCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSC--CSEEEEEEESCCHHHHHHHHTTSCHHH
T ss_pred eecccceecCCCCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCC--CCEEEEEEecccHHHHHHHHHhhhhhh
Confidence 3444444444 56789999 9999999999999999999999999999766 347899888864211 12
Q ss_pred ccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHH
Q 001400 900 FARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTI 979 (1085)
Q Consensus 900 ~~~~~gy~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~i 979 (1085)
+.+.+.++.|.+. ...+.+.-.. ....+.+.....+ .+..... ..+..||+|| ||+++
T Consensus 124 ~~~~v~~~~~~~~-----~~~~r~~~~~------------~~~~~ae~~~~~~-~~vl~~l---d~~~~lS~g~-r~v~l 181 (347)
T 2obl_A 124 LSKCVLVVTTSDR-----PALERMKAAF------------TATTIAEYFRDQG-KNVLLMM---DSVTRYARAA-RDVGL 181 (347)
T ss_dssp HTTEEEEEECTTS-----CHHHHHHHHH------------HHHHHHHHHHTTT-CEEEEEE---ETHHHHHHHH-HHHHH
T ss_pred hhceEEEEECCCC-----CHHHHHHHHH------------HHHHHHHHHHhcc-ccHHHHH---hhHHHHHHHH-HHHHH
Confidence 3456778877532 2222221100 0000111111001 0000000 1124699999 89999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH--CCc-----eEEEEecCccHHHHHhcCEEEEEecCcEEEEec
Q 001400 980 AVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVN--TGR-----TIVCTIHQPSIDIFESFDELLFMKRGGELIYAG 1052 (1085)
Q Consensus 980 A~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~--~g~-----tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g 1052 (1085)
| +.+|++ |+|||+.....+.++++++.+ .|. ||++++||++ ...||+++++.+ |+++..+
T Consensus 182 a---l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~---~~i~d~v~~i~d-G~Ivl~~ 248 (347)
T 2obl_A 182 A---SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN---DPIGDEVRSILD-GHIVLTR 248 (347)
T ss_dssp H---TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC---CHHHHHHHHHCS-EEEEBCH
T ss_pred H---cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC---ChhhhheEEeeC-cEEEEeC
Confidence 9 688887 999999999999999999864 477 9999999987 346899999974 7999887
Q ss_pred CC
Q 001400 1053 PL 1054 (1085)
Q Consensus 1053 ~~ 1054 (1085)
++
T Consensus 249 ~l 250 (347)
T 2obl_A 249 EL 250 (347)
T ss_dssp HH
T ss_pred CH
Confidence 64
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=1.2e-15 Score=183.97 Aligned_cols=155 Identities=14% Similarity=0.102 Sum_probs=111.7
Q ss_pred eeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCCCceEEEEccCCCCCCCCCHHHHHHHhh
Q 001400 155 SGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAG 234 (1085)
Q Consensus 155 s~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~ 234 (1085)
++.+++|++++|+||||||||||++.++|...+ .|+ +.+.|++|++. .++.++..
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~----~G~--------------~vi~~~~ee~~----~~l~~~~~--- 329 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACA----NKE--------------RAILFAYEESR----AQLLRNAY--- 329 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHT----TTC--------------CEEEEESSSCH----HHHHHHHH---
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHh----CCC--------------CEEEEEEeCCH----HHHHHHHH---
Confidence 669999999999999999999999999998765 232 12455566542 12222211
Q ss_pred hhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCcccccCchhhhhH
Q 001400 235 QCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKR 314 (1085)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqkqR 314 (1085)
++ +. + ++. +...|+....+.. ...|||||+||
T Consensus 330 ~~--------------------g~----~------------------~~~-~~~~g~~~~~~~~-----p~~LS~g~~q~ 361 (525)
T 1tf7_A 330 SW--------------------GM----D------------------FEE-MERQNLLKIVCAY-----PESAGLEDHLQ 361 (525)
T ss_dssp TT--------------------SC----C------------------HHH-HHHTTSEEECCCC-----GGGSCHHHHHH
T ss_pred Hc--------------------CC----C------------------HHH-HHhCCCEEEEEec-----cccCCHHHHHH
Confidence 00 00 0 111 1234554444432 35699999999
Q ss_pred HHHHHHHhCCCcEeEEeCCCCCCCHH-----HHHHHHHHHHHHHhccCCEEEEEEecCh----------hHHHhhcCeEE
Q 001400 315 LTTGELLVGPARVLFMDEISNGLDSS-----TTYQIIKYLKHSTRALDGTTVISLLQPA----------PEAYELFDDVI 379 (1085)
Q Consensus 315 vsia~al~~~p~vlllDEptsgLD~~-----~~~~i~~~l~~~~~~~~~t~ii~~~q~~----------~~~~~~~D~ii 379 (1085)
+.+|+++..+|+++++| ||+|||.. .+..+.+.++.+.+ .+.|+++ +.|.. ..+..++|+|+
T Consensus 362 ~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~-~g~tvil-vsh~~~~~~~~~~~~~~l~~~~D~vi 438 (525)
T 1tf7_A 362 IIKSEINDFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYAKQ-EEITGLF-TNTSDQFMGAHSITDSHISTITDTII 438 (525)
T ss_dssp HHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHH-TTCEEEE-EEECSSSSCCCSSCSSCCTTTCSEEE
T ss_pred HHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHh-CCCEEEE-EECcccccCcccccCcccceeeeEEE
Confidence 99999999999999999 99999999 99999999988765 3555555 55555 66778999999
Q ss_pred EecCCe
Q 001400 380 LLSEGQ 385 (1085)
Q Consensus 380 ~L~~G~ 385 (1085)
+|++|+
T Consensus 439 ~L~~ge 444 (525)
T 1tf7_A 439 LLQYVE 444 (525)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 999886
|
| >3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=1.3e-15 Score=191.92 Aligned_cols=89 Identities=12% Similarity=0.156 Sum_probs=70.3
Q ss_pred ccCchhhhhHHHHHHHH--hCCCcEeEEeCCCCCCCHHHHHHH-HHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEe
Q 001400 305 KGISGGQKKRLTTGELL--VGPARVLFMDEISNGLDSSTTYQI-IKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILL 381 (1085)
Q Consensus 305 ~~LSGGqkqRvsia~al--~~~p~vlllDEptsgLD~~~~~~i-~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L 381 (1085)
+++|+|+++++.+|+++ +.+|++++|||||+|||+.....+ +..++.+.+..+.++ +.++|+ .++..++|++..+
T Consensus 720 ~~lStf~~e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~v-l~aTH~-~el~~lad~~~~v 797 (934)
T 3thx_A 720 KGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFC-MFATHF-HELTALANQIPTV 797 (934)
T ss_dssp ---CHHHHHHHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEE-EEEESC-GGGGGGGGTCTTE
T ss_pred HhHhhhHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEE-EEEcCc-HHHHHHhccccee
Confidence 46888888888888888 999999999999999999999888 566676665334454 446676 5677899999999
Q ss_pred cCCeEEEecChhhH
Q 001400 382 SEGQIVYQGPRVSV 395 (1085)
Q Consensus 382 ~~G~iv~~G~~~~~ 395 (1085)
.+|++.+.++.+++
T Consensus 798 ~ng~v~~~~~~~~l 811 (934)
T 3thx_A 798 NNLHVTALTTEETL 811 (934)
T ss_dssp EEEEEEEEEETTEE
T ss_pred EeeEEEEEecCCcE
Confidence 99999998876554
|
| >2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=2.6e-16 Score=178.64 Aligned_cols=180 Identities=18% Similarity=0.173 Sum_probs=124.4
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCC----------CCCceEEEEccC
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEF----------VPPRTSAYVSQQ 217 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~----------~~~~~~~yv~Q~ 217 (1085)
..+|+++ +.|.+|++++|+||||||||||+++|+|...++ .|.|.+.|++..+. ..++.+.+++|.
T Consensus 59 ~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~---~g~i~~~G~~~~ev~~~i~~~~~~~~~~~v~~~~~~ 134 (347)
T 2obl_A 59 VRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASAD---IIVLALIGERGREVNEFLALLPQSTLSKCVLVVTTS 134 (347)
T ss_dssp CHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCS---EEEEEEESCCHHHHHHHHTTSCHHHHTTEEEEEECT
T ss_pred CEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCC---EEEEEEecccHHHHHHHHHhhhhhhhhceEEEEECC
Confidence 4699999 999999999999999999999999999998876 89999988642110 123567788775
Q ss_pred CCCCCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccc
Q 001400 218 DWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADT 297 (1085)
Q Consensus 218 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 297 (1085)
+. ...+.+.-.... ..++ + .....| .|.
T Consensus 135 ~~-----~~~~r~~~~~~~----------~~~a--e-------------------------------~~~~~~----~~v 162 (347)
T 2obl_A 135 DR-----PALERMKAAFTA----------TTIA--E-------------------------------YFRDQG----KNV 162 (347)
T ss_dssp TS-----CHHHHHHHHHHH----------HHHH--H-------------------------------HHHTTT----CEE
T ss_pred CC-----CHHHHHHHHHHH----------HHHH--H-------------------------------HHHhcc----ccH
Confidence 42 222222111000 0000 0 000001 010
Q ss_pred cccCcccccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCE-----EEEEEecChhHHH
Q 001400 298 LVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGT-----TVISLLQPAPEAY 372 (1085)
Q Consensus 298 ~vg~~~~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t-----~ii~~~q~~~~~~ 372 (1085)
.+--+.+..+|+|| |||++| +++|++ |+|||+.....+.+.++++.+..+++ +|++.+|+.. .
T Consensus 163 l~~ld~~~~lS~g~-r~v~la---l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~--~ 230 (347)
T 2obl_A 163 LLMMDSVTRYARAA-RDVGLA---SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN--D 230 (347)
T ss_dssp EEEEETHHHHHHHH-HHHHHH---TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC--C
T ss_pred HHHHhhHHHHHHHH-HHHHHH---cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC--C
Confidence 00001245699999 899999 678877 99999999999999998875312355 5666778776 6
Q ss_pred hhcCeEEEecCCeEEEecChhhH
Q 001400 373 ELFDDVILLSEGQIVYQGPRVSV 395 (1085)
Q Consensus 373 ~~~D~ii~L~~G~iv~~G~~~~~ 395 (1085)
.++|+++++.+|+++..|+..+.
T Consensus 231 ~i~d~v~~i~dG~Ivl~~~l~~~ 253 (347)
T 2obl_A 231 PIGDEVRSILDGHIVLTRELAEE 253 (347)
T ss_dssp HHHHHHHHHCSEEEEBCHHHHTT
T ss_pred hhhhheEEeeCcEEEEeCCHHHc
Confidence 78999999999999999987654
|
| >4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=1.7e-16 Score=170.16 Aligned_cols=152 Identities=19% Similarity=0.224 Sum_probs=93.1
Q ss_pred EEEeCCeEEEEEccCCCChhHHHhhhhCC--CCC---CeeeeEEEEcCccCChhcccceEEEEccCCCCCCCCCHHHHHH
Q 001400 850 GAFRPGVLTALVGVSGAGKTTLMDVLAGR--KTG---GIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLESLL 924 (1085)
Q Consensus 850 ~~i~~Ge~~al~G~nGaGKSTLl~~l~g~--~~~---~~~~G~i~i~g~~~~~~~~~~~~gy~~Q~~~~~~~~tv~e~l~ 924 (1085)
+.|++|++++|+||||||||||+++|+|. .++ +...+.+++++..... .+.+++++|...+.+. |+.||+.
T Consensus 20 ggi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~---~~~i~~~~~~~~~~~~-~~~~~~~ 95 (231)
T 4a74_A 20 GGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFR---PERIREIAQNRGLDPD-EVLKHIY 95 (231)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCC---HHHHHHHHHHTTSCHH-HHHHTEE
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCC---HHHHHHHHHHcCCCHH-HHhhcEE
Confidence 36899999999999999999999999983 221 1123577777653210 1112233333222221 2333221
Q ss_pred HhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCH-HHHHHHHHHHHHhc-------CCCEEEEeCCC
Q 001400 925 FSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLST-EQRKRLTIAVELVA-------NPSIVFMDEPT 996 (1085)
Q Consensus 925 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~-Gqrqrl~iA~aL~~-------~p~illlDEPt 996 (1085)
+. ...+. .+++.+..+.+++. +|++|++||||
T Consensus 96 ~~----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~ 135 (231)
T 4a74_A 96 VA----------------------------------------RAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLT 135 (231)
T ss_dssp EE----------------------------------------ECCSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSS
T ss_pred EE----------------------------------------ecCChHHHHHHHHHHHHHHHHhcccCCceeEEEECChH
Confidence 11 01222 33334555555555 89999999999
Q ss_pred CCCCHH-------H-----HHHHHHHHHHHHH-CCceEEEEecCccH---HHHHhcCEEEEEecC
Q 001400 997 SGLDAR-------A-----AAIVMRTVRNIVN-TGRTIVCTIHQPSI---DIFESFDELLFMKRG 1045 (1085)
Q Consensus 997 sgLD~~-------~-----~~~i~~~l~~~~~-~g~tvi~~~H~~~~---~~~~~~d~il~l~~g 1045 (1085)
+++|+. . ...+++.|+++++ .|.|||+++|..+. .+...+|++++|++|
T Consensus 136 ~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~ 200 (231)
T 4a74_A 136 SHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKG 200 (231)
T ss_dssp HHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEEC
T ss_pred HHhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEec
Confidence 999984 2 2367777777764 49999999994431 255678999999864
|
| >3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B* | Back alignment and structure |
|---|
Probab=99.57 E-value=6.8e-16 Score=193.85 Aligned_cols=138 Identities=14% Similarity=0.130 Sum_probs=93.8
Q ss_pred CeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCChhcccceEEEEccCCCCCCCCCHH
Q 001400 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVL 920 (1085)
Q Consensus 841 ~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gy~~Q~~~~~~~~tv~ 920 (1085)
+..+++|||+++++|++++|+|||||||||||+++++..... .. |...... ...++++ +.++..+.+.
T Consensus 659 ~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~a-q~------g~~vpa~--~~~i~~~---d~i~~~ig~~ 726 (918)
T 3thx_B 659 DQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMA-QI------GSYVPAE--EATIGIV---DGIFTRMGAA 726 (918)
T ss_dssp SSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHH-HH------TCCBSSS--EEEEECC---SEEEEEC---
T ss_pred CceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHh-hc------Cccccch--hhhhhHH---HHHHHhCChH
Confidence 456899999999999999999999999999999997631100 00 1000000 0011111 1111111111
Q ss_pred HHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCC
Q 001400 921 ESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLD 1000 (1085)
Q Consensus 921 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEPtsgLD 1000 (1085)
+++ .. +.+.+|+|++|++.|+++ +.+|+++||||||+|||
T Consensus 727 d~l----------------------------------~~-----~~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD 766 (918)
T 3thx_B 727 DNI----------------------------------YK-----GRSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTS 766 (918)
T ss_dssp ----------------------------------------------CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSC
T ss_pred HHH----------------------------------HH-----hHHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCC
Confidence 111 00 124689999999999999 89999999999999999
Q ss_pred HHHHHHHH-HHHHHHHH-CCceEEEEecCccH
Q 001400 1001 ARAAAIVM-RTVRNIVN-TGRTIVCTIHQPSI 1030 (1085)
Q Consensus 1001 ~~~~~~i~-~~l~~~~~-~g~tvi~~~H~~~~ 1030 (1085)
+.....+. .+++.+.+ .|.|||++||+++.
T Consensus 767 ~~~~~~i~~~il~~L~~~~g~tvl~vTH~~el 798 (918)
T 3thx_B 767 THDGIAIAYATLEYFIRDVKSLTLFVTHYPPV 798 (918)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEEEECSCGGG
T ss_pred HHHHHHHHHHHHHHHHHhcCCeEEEEeCcHHH
Confidence 99888886 77777765 59999999999753
|
| >1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=5.3e-16 Score=192.27 Aligned_cols=129 Identities=21% Similarity=0.143 Sum_probs=95.2
Q ss_pred CeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCChhcccceEEEEccCCCCCCCCCHH
Q 001400 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVL 920 (1085)
Q Consensus 841 ~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gy~~Q~~~~~~~~tv~ 920 (1085)
+..+++|+|++ |++++|+|||||||||||++|+|.... ...|.+. + ..+..+|+++| +++.+++.
T Consensus 565 ~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~-~~~G~~v----p----a~~~~i~~v~~---i~~~~~~~ 629 (765)
T 1ewq_A 565 TEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALL-AQVGSFV----P----AEEAHLPLFDG---IYTRIGAS 629 (765)
T ss_dssp SCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHH-HTTTCCB----S----SSEEEECCCSE---EEEECCC-
T ss_pred CceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhh-cccCcee----e----hhccceeeHHH---hhccCCHH
Confidence 45789999999 999999999999999999999995310 0123321 1 11234677665 33444444
Q ss_pred HHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHH--hcCCCEEEEeCC---
Q 001400 921 ESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVEL--VANPSIVFMDEP--- 995 (1085)
Q Consensus 921 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL--~~~p~illlDEP--- 995 (1085)
|++. .++|+|+++++.+|+++ +.+|+++|||||
T Consensus 630 d~l~------------------------------------------~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrG 667 (765)
T 1ewq_A 630 DDLA------------------------------------------GGKSTFMVEMEEVALILKEATENSLVLLDEVGRG 667 (765)
T ss_dssp -----------------------------------------------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTT
T ss_pred HHHH------------------------------------------hcccHHHHHHHHHHHHHHhccCCCEEEEECCCCC
Confidence 4331 14799999999999999 999999999999
Q ss_pred CCCCCHHHH-HHHHHHHHHHHHCCceEEEEecCcc
Q 001400 996 TSGLDARAA-AIVMRTVRNIVNTGRTIVCTIHQPS 1029 (1085)
Q Consensus 996 tsgLD~~~~-~~i~~~l~~~~~~g~tvi~~~H~~~ 1029 (1085)
|++||+.+. ..+.+.+.+ .|.|+|++||+.+
T Consensus 668 Ts~lD~~~~~~~i~~~L~~---~g~~vl~~TH~~~ 699 (765)
T 1ewq_A 668 TSSLDGVAIATAVAEALHE---RRAYTLFATHYFE 699 (765)
T ss_dssp SCHHHHHHHHHHHHHHHHH---HTCEEEEECCCHH
T ss_pred CCCcCHHHHHHHHHHHHHh---CCCEEEEEeCCHH
Confidence 999999875 467777765 5899999999964
|
| >4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=5e-16 Score=166.45 Aligned_cols=154 Identities=18% Similarity=0.156 Sum_probs=92.8
Q ss_pred eeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCC----ceeeEEEECCccCCCCCCCceEEEEccCCCCCCCCCHHHHHH
Q 001400 156 GIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHL----QVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLD 231 (1085)
Q Consensus 156 ~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~----~~~G~i~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~ 231 (1085)
+-+++|++++|+||||||||||+++|+|.+.+.. ...|.|.+++.+. ...+.+++++|...+.+. ||.||+.
T Consensus 20 ggi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~---~~~~~i~~~~~~~~~~~~-~~~~~~~ 95 (231)
T 4a74_A 20 GGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT---FRPERIREIAQNRGLDPD-EVLKHIY 95 (231)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC---CCHHHHHHHHHHTTSCHH-HHHHTEE
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCC---CCHHHHHHHHHHcCCCHH-HHhhcEE
Confidence 5799999999999999999999999999654420 1234666665321 011223344443332222 3333332
Q ss_pred HhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCcccccCchh-
Q 001400 232 FAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGG- 310 (1085)
Q Consensus 232 f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGG- 310 (1085)
+. ...+++
T Consensus 96 ~~-----------------------------------------------------------------------~~~~~~~ 104 (231)
T 4a74_A 96 VA-----------------------------------------------------------------------RAFNSNH 104 (231)
T ss_dssp EE-----------------------------------------------------------------------ECCSHHH
T ss_pred EE-----------------------------------------------------------------------ecCChHH
Confidence 21 112222
Q ss_pred hhhHHHHHHHHh-------CCCcEeEEeCCCCCCCHH-------H-----HHHHHHHHHHHHhccCCEEEEEEecChh--
Q 001400 311 QKKRLTTGELLV-------GPARVLFMDEISNGLDSS-------T-----TYQIIKYLKHSTRALDGTTVISLLQPAP-- 369 (1085)
Q Consensus 311 qkqRvsia~al~-------~~p~vlllDEptsgLD~~-------~-----~~~i~~~l~~~~~~~~~t~ii~~~q~~~-- 369 (1085)
+++.+..+++++ .+|+++++||||++||+. . ..++++.|+++++..+ .+|+.++|...
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g-~tvi~vtH~~~~~ 183 (231)
T 4a74_A 105 QMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYD-IAVFVTNQVQANG 183 (231)
T ss_dssp HHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHT-CEEEEEEECC---
T ss_pred HHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHCC-CeEEEEeecccCc
Confidence 222244444443 489999999999999983 1 2367888888776554 45555777444
Q ss_pred --HHHhhcCeEEEecCCe
Q 001400 370 --EAYELFDDVILLSEGQ 385 (1085)
Q Consensus 370 --~~~~~~D~ii~L~~G~ 385 (1085)
.+...+|+++.|++|+
T Consensus 184 g~~~~~~~d~~l~l~~~~ 201 (231)
T 4a74_A 184 GHILAHSATLRVYLRKGK 201 (231)
T ss_dssp ------CCSEEEEEEECT
T ss_pred chhhHhhceEEEEEEecC
Confidence 4888999999998753
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=1.9e-16 Score=177.03 Aligned_cols=160 Identities=14% Similarity=0.042 Sum_probs=84.5
Q ss_pred cccCCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCC-CCCCeeeeEEEEcCccCChhcccceEEEEccCCCCCC
Q 001400 837 VLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGR-KTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSP 915 (1085)
Q Consensus 837 ~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~-~~~~~~~G~i~i~g~~~~~~~~~~~~gy~~Q~~~~~~ 915 (1085)
+.++++.++++++|+| +|+|+||||||||++.|+|. .. +.+| +.++|.+.......+.++|++|.+....
T Consensus 6 ~~~~~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~--~~~g-i~~~g~~~~~t~~~~~~~~~~q~~~~~~ 76 (301)
T 2qnr_A 6 NQVHRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLY--PERV-ISGAAEKIERTVQIEASTVEIEERGVKL 76 (301)
T ss_dssp ------------CEEE------EEEEETTSSHHHHHHHHHC---------------------------CEEEEC---CCE
T ss_pred ceECCEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCcc--CCCC-cccCCcccCCcceEeeEEEEecCCCccc
Confidence 3456678999999998 99999999999999999996 43 3467 8777766543222355789999888777
Q ss_pred CCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCC
Q 001400 916 GLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEP 995 (1085)
Q Consensus 916 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEP 995 (1085)
.+|+.|+..++.... .. +.....++.+.+. .+... .++|+|||||+.+||+++ +|++|||
T Consensus 77 ~ltv~Dt~g~~~~~~-~~----e~~~~l~~~l~~~------~~~~~-----~~~sgg~rqrv~~ara~~----ll~ldeP 136 (301)
T 2qnr_A 77 RLTVVDTPGYGDAIN-CR----DCFKTIISYIDEQ------FERYL-----HDESGLNRRHIIDNRVHC----CFYFISP 136 (301)
T ss_dssp EEEEEEEC----------------CTTHHHHHHHH------HHHHH-----HHHTSSCCTTCCCCCCCE----EEEEECS
T ss_pred CcchhhhhhhhhhcC-cH----HHHHHHHHHHHHH------HHHHH-----HHhCHHhhhhhhhhhhhh----eeeeecC
Confidence 888888876643221 00 0000111111111 11222 369999999999998885 9999999
Q ss_pred CCC-CCHHHHHHHHHHHHHHHHC-CceEEEEecCcc
Q 001400 996 TSG-LDARAAAIVMRTVRNIVNT-GRTIVCTIHQPS 1029 (1085)
Q Consensus 996 tsg-LD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~ 1029 (1085)
|++ ||+... +.++++.+. +.++|++.||+.
T Consensus 137 t~~~Ld~~~~----~~l~~l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 137 FGHGLKPLDV----AFMKAIHNKVNIVPVIAKADTL 168 (301)
T ss_dssp SSSSCCHHHH----HHHHHHTTTSCEEEEECCGGGS
T ss_pred cccCCCHHHH----HHHHHHHhcCCEEEEEEeCCCC
Confidence 985 999873 556665443 789999999964
|
| >2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B* | Back alignment and structure |
|---|
Probab=99.55 E-value=7.9e-16 Score=196.42 Aligned_cols=159 Identities=14% Similarity=0.084 Sum_probs=111.7
Q ss_pred eeecccceeeEeC-------CeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCCCceEE-EEccCCC
Q 001400 148 LTILDDLSGIIRP-------SRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSA-YVSQQDW 219 (1085)
Q Consensus 148 ~~iL~~vs~~i~~-------G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~~~~~~-yv~Q~d~ 219 (1085)
..+++|+++.+++ |++++|+|||||||||||+++ |.+... ..+| ||||+..
T Consensus 769 ~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~~--------------------aqiG~~Vpq~~~ 827 (1022)
T 2o8b_B 769 DFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAVM--------------------AQMGCYVPAEVC 827 (1022)
T ss_dssp CCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHHH--------------------HTTTCCEESSEE
T ss_pred ceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHHH--------------------hheeEEeccCcC
Confidence 4689999999987 999999999999999999999 987421 1234 9999763
Q ss_pred CCCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccc
Q 001400 220 QVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLV 299 (1085)
Q Consensus 220 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~v 299 (1085)
.+||.|+|.. + +|+.+...
T Consensus 828 ---~l~v~d~I~~--r-----------------------------------------------------ig~~d~~~--- 846 (1022)
T 2o8b_B 828 ---RLTPIDRVFT--R-----------------------------------------------------LGASDRIM--- 846 (1022)
T ss_dssp ---EECCCSBEEE--E-----------------------------------------------------CC---------
T ss_pred ---CCCHHHHHHH--H-----------------------------------------------------cCCHHHHh---
Confidence 4566555411 0 01110000
Q ss_pred cCcccccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHH-HHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeE
Q 001400 300 GDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTT-YQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDV 378 (1085)
Q Consensus 300 g~~~~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~-~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i 378 (1085)
.....+|++++ ++++|++++.+|++++||||++|+|+... ..++..|+.+.+..+ .+++.++|+.+.+..++|++
T Consensus 847 --~~~stf~~em~-~~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g-~~vl~~TH~~el~~~~~d~~ 922 (1022)
T 2o8b_B 847 --SGESTFFVELS-ETASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIK-CRTLFSTHYHSLVEDYSQNV 922 (1022)
T ss_dssp -----CHHHHHHH-HHHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSC-CEEEEECCCHHHHHHTSSCS
T ss_pred --hchhhhHHHHH-HHHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCC-CEEEEEeCCHHHHHHhCCcc
Confidence 01234677666 49999999999999999999999999885 446788888865434 45556788888888899999
Q ss_pred EEecCCeEE--EecChh
Q 001400 379 ILLSEGQIV--YQGPRV 393 (1085)
Q Consensus 379 i~L~~G~iv--~~G~~~ 393 (1085)
.++ +|++. +.|+.+
T Consensus 923 ~v~-~g~~~~~~~~~~~ 938 (1022)
T 2o8b_B 923 AVR-LGHMACMVENECE 938 (1022)
T ss_dssp SEE-EEEEEEC------
T ss_pred eee-cCeEEEEEecCcc
Confidence 887 58887 455543
|
| >3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=9.2e-17 Score=170.16 Aligned_cols=144 Identities=14% Similarity=0.095 Sum_probs=105.2
Q ss_pred EeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCCCceEEEEccCCCCC--CCCCHHHHHHHhhh
Q 001400 158 IRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQV--AEMTVRETLDFAGQ 235 (1085)
Q Consensus 158 i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~~~~~~yv~Q~d~~~--~~lTV~E~l~f~~~ 235 (1085)
.++|++++|+||||||||||+++|+|.+++ .++|++|++.++ ..+|+++++.+...
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~----------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~~ 60 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE----------------------RVALLPMDHYYKDLGHLPLEERLRVNYD 60 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG----------------------GEEEEEGGGCBCCCTTSCHHHHHHSCTT
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC----------------------CeEEEecCccccCcccccHHHhcCCCCC
Confidence 578999999999999999999999998753 479999998766 56899988765321
Q ss_pred hcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCcccccCchhh----
Q 001400 236 CQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQ---- 311 (1085)
Q Consensus 236 ~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGq---- 311 (1085)
.. . . .....+.++++.+++.+..+.. ...+|+||
T Consensus 61 ~~--~-~----------------------------------~~~~~~~~~l~~~~~~~~~~~~-----~~~~s~g~~~~~ 98 (211)
T 3asz_A 61 HP--D-A----------------------------------FDLALYLEHAQALLRGLPVEMP-----VYDFRAYTRSPR 98 (211)
T ss_dssp SG--G-G----------------------------------BCHHHHHHHHHHHHTTCCEEEC-----CEETTTTEECSS
T ss_pred Ch--h-h----------------------------------hhHHHHHHHHHHHHcCCCcCCC-----cccCcccCCCCC
Confidence 00 0 0 0011245566777776554433 34589986
Q ss_pred hhHHHHHHHHhCCCcEeEEeCCCCC-------CCHHHHHHHHHHHHHHHhccCCEEEEEEe
Q 001400 312 KKRLTTGELLVGPARVLFMDEISNG-------LDSSTTYQIIKYLKHSTRALDGTTVISLL 365 (1085)
Q Consensus 312 kqRvsia~al~~~p~vlllDEptsg-------LD~~~~~~i~~~l~~~~~~~~~t~ii~~~ 365 (1085)
+||+++|++++.+|+++++||||++ ||+....++.+.+++.....+.+++.+.|
T Consensus 99 ~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r~l~r~~~~~g~t~~~~~~ 159 (211)
T 3asz_A 99 RTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADERFIRRLKRDVLERGRSLEGVVA 159 (211)
T ss_dssp CEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred eEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 4789999999999999999999999 99999999999888764333445444333
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.53 E-value=3.1e-15 Score=163.38 Aligned_cols=133 Identities=20% Similarity=0.232 Sum_probs=93.3
Q ss_pred eecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCCCceEEEEccCCCCCCCCCHHH
Q 001400 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRE 228 (1085)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E 228 (1085)
++|+++| +++|++++|+|||||||||||++|+|.+++. .+|+|.++|.++... .+...++++|.
T Consensus 15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~--~~G~I~~~g~~i~~~-~~~~~~~v~q~----------- 78 (261)
T 2eyu_A 15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQT--KSYHIITIEDPIEYV-FKHKKSIVNQR----------- 78 (261)
T ss_dssp THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHH--CCCEEEEEESSCCSC-CCCSSSEEEEE-----------
T ss_pred HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCC--CCCEEEEcCCcceee-cCCcceeeeHH-----------
Confidence 4899999 9999999999999999999999999998642 279999998764211 11111111110
Q ss_pred HHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCcccccCc
Q 001400 229 TLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGIS 308 (1085)
Q Consensus 229 ~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LS 308 (1085)
.+|++. ..+
T Consensus 79 -----------------------------------------------------------~~gl~~-----------~~l- 87 (261)
T 2eyu_A 79 -----------------------------------------------------------EVGEDT-----------KSF- 87 (261)
T ss_dssp -----------------------------------------------------------EBTTTB-----------SCH-
T ss_pred -----------------------------------------------------------HhCCCH-----------HHH-
Confidence 011110 112
Q ss_pred hhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEecC
Q 001400 309 GGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSE 383 (1085)
Q Consensus 309 GGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~~ 383 (1085)
|++||++|..+|+++++|||| |..+...+++ . +. .+.+ |++++|... +...+|+++.|..
T Consensus 88 -----~~~la~aL~~~p~illlDEp~---D~~~~~~~l~---~-~~-~g~~-vl~t~H~~~-~~~~~dri~~l~~ 147 (261)
T 2eyu_A 88 -----ADALRAALREDPDVIFVGEMR---DLETVETALR---A-AE-TGHL-VFGTLHTNT-AIDTIHRIVDIFP 147 (261)
T ss_dssp -----HHHHHHHHHHCCSEEEESCCC---SHHHHHHHHH---H-HH-TTCE-EEEEECCSS-HHHHHHHHHHTSC
T ss_pred -----HHHHHHHHhhCCCEEEeCCCC---CHHHHHHHHH---H-Hc-cCCE-EEEEeCcch-HHHHHHHHhhhcC
Confidence 899999999999999999999 9888665443 2 22 3445 455556654 6788999988864
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* | Back alignment and structure |
|---|
Probab=99.53 E-value=1.8e-14 Score=142.84 Aligned_cols=83 Identities=24% Similarity=0.311 Sum_probs=69.1
Q ss_pred CcccccCchhhhhHHHHH------HHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhh
Q 001400 301 DEMLKGISGGQKKRLTTG------ELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYEL 374 (1085)
Q Consensus 301 ~~~~~~LSGGqkqRvsia------~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~ 374 (1085)
+..+..||||||||++|| ++|+.+|++++|||||+|||+.++..+.+.++++.+. +.+ |+.++|+. ++...
T Consensus 52 ~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-~~t-iiivsH~~-~~~~~ 128 (148)
T 1f2t_B 52 ERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKK-IPQ-VILVSHDE-ELKDA 128 (148)
T ss_dssp EECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGG-SSE-EEEEESCG-GGGGG
T ss_pred cCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHcc-CCE-EEEEEChH-HHHHh
Confidence 345678999999999876 8999999999999999999999999999999987653 445 55566776 67889
Q ss_pred cCeEEEe--cCCeE
Q 001400 375 FDDVILL--SEGQI 386 (1085)
Q Consensus 375 ~D~ii~L--~~G~i 386 (1085)
+|++++| .+|..
T Consensus 129 ~d~ii~l~~~~g~s 142 (148)
T 1f2t_B 129 ADHVIRISLENGSS 142 (148)
T ss_dssp CSEEEEEEEETTEE
T ss_pred CCEEEEEEcCCCeE
Confidence 9999999 45643
|
| >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* | Back alignment and structure |
|---|
Probab=99.52 E-value=5.2e-16 Score=172.99 Aligned_cols=148 Identities=15% Similarity=0.098 Sum_probs=101.2
Q ss_pred CCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCChh-------cc--cceEEEEccCCCCCCCCCHHHHHH
Q 001400 854 PGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE-------TF--ARISGYCEQNDIHSPGLTVLESLL 924 (1085)
Q Consensus 854 ~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~-------~~--~~~~gy~~Q~~~~~~~~tv~e~l~ 924 (1085)
+|++++|+||||||||||+++|+|... +..|+|.+.|.+.... .+ ++.++|++|++...|..+++|++.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~--~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~ 178 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQ--NLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQ 178 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHH--TTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH--hcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHH
Confidence 699999999999999999999999755 3479999999875321 11 345899999998888889999987
Q ss_pred HhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHH
Q 001400 925 FSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAA 1004 (1085)
Q Consensus 925 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEPtsgLD~~~~ 1004 (1085)
+... +.. + ..+++..++.+..+ ..++..++||++||||++.+|+.++| .||+.+.
T Consensus 179 ~~~~-~~~-d----------~~llDt~G~~~~~~--------~~~~eLs~~r~~iaRal~~~P~~~lL-----vLDa~t~ 233 (304)
T 1rj9_A 179 AMKA-RGY-D----------LLFVDTAGRLHTKH--------NLMEELKKVKRAIAKADPEEPKEVWL-----VLDAVTG 233 (304)
T ss_dssp HHHH-HTC-S----------EEEECCCCCCTTCH--------HHHHHHHHHHHHHHHHCTTCCSEEEE-----EEETTBC
T ss_pred HHHh-CCC-C----------EEEecCCCCCCchH--------HHHHHHHHHHHHHHHhhcCCCCeEEE-----EEcHHHH
Confidence 5421 100 0 00111122221111 12455668999999999999994333 3444444
Q ss_pred HHHHHHHHHHHHC-CceEEEEecCc
Q 001400 1005 AIVMRTVRNIVNT-GRTIVCTIHQP 1028 (1085)
Q Consensus 1005 ~~i~~~l~~~~~~-g~tvi~~~H~~ 1028 (1085)
..+++.++++.+. |.|+|++||+.
T Consensus 234 ~~~~~~~~~~~~~~~~t~iivTh~d 258 (304)
T 1rj9_A 234 QNGLEQAKKFHEAVGLTGVIVTKLD 258 (304)
T ss_dssp THHHHHHHHHHHHHCCSEEEEECTT
T ss_pred HHHHHHHHHHHHHcCCcEEEEECCc
Confidence 4566666766544 89999999974
|
| >3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=4.2e-17 Score=172.77 Aligned_cols=145 Identities=17% Similarity=0.166 Sum_probs=109.1
Q ss_pred EeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCChhcccceEEEEccCCCCC--CCCCHHHHHHHhhhh
Q 001400 852 FRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHS--PGLTVLESLLFSAWL 929 (1085)
Q Consensus 852 i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gy~~Q~~~~~--~~~tv~e~l~~~~~~ 929 (1085)
.++|+++||+|+||||||||+++|+|...+ .++|++|++.++ ..+|+.+++.+..
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~---------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~-- 59 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE---------------------RVALLPMDHYYKDLGHLPLEERLRVNY-- 59 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG---------------------GEEEEEGGGCBCCCTTSCHHHHHHSCT--
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC---------------------CeEEEecCccccCcccccHHHhcCCCC--
Confidence 468999999999999999999999985431 368999987765 5678988875431
Q ss_pred cCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHH----HHHHHHHHHHhcCCCEEEEeCCCCC-------
Q 001400 930 RLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQ----RKRLTIAVELVANPSIVFMDEPTSG------- 998 (1085)
Q Consensus 930 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gq----rqrl~iA~aL~~~p~illlDEPtsg------- 998 (1085)
..+... ..+.+.++++.+++.+..+. | ...+|+|| +||+++|++++.+|.++++||||++
T Consensus 60 ~~~~~~----~~~~~~~~l~~~~~~~~~~~----~-~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ 130 (211)
T 3asz_A 60 DHPDAF----DLALYLEHAQALLRGLPVEM----P-VYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVF 130 (211)
T ss_dssp TSGGGB----CHHHHHHHHHHHHTTCCEEE----C-CEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEE
T ss_pred CChhhh----hHHHHHHHHHHHHcCCCcCC----C-cccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEE
Confidence 111111 12345666777766554333 2 24689996 4788999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHH-HHCCceEEEEecCc
Q 001400 999 LDARAAAIVMRTVRNI-VNTGRTIVCTIHQP 1028 (1085)
Q Consensus 999 LD~~~~~~i~~~l~~~-~~~g~tvi~~~H~~ 1028 (1085)
||+.....+.+.+++. .+.|+|++.++|+.
T Consensus 131 ld~~~~~~~~r~l~r~~~~~g~t~~~~~~~~ 161 (211)
T 3asz_A 131 VDADADERFIRRLKRDVLERGRSLEGVVAQY 161 (211)
T ss_dssp EECCHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred EeCCHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 9999999999999875 45699999999974
|
| >2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.52 E-value=1.3e-16 Score=165.55 Aligned_cols=159 Identities=19% Similarity=0.224 Sum_probs=105.4
Q ss_pred CeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCC-CCCceEEEEccCCCCCCCCCHHHHHHHhhhhcCC
Q 001400 161 SRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEF-VPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGV 239 (1085)
Q Consensus 161 G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~-~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~ 239 (1085)
|++++|+||||||||||+++|+|.+. . +| |.++|....+. ...+.++|++|+.. .. ++++ ++...
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~---~G-i~~~g~~~~~~~~~~~~ig~~~~~~~--g~---~~~l---~~~~~- 66 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-S---SG-VPVDGFYTEEVRQGGRRIGFDVVTLS--GT---RGPL---SRVGL- 66 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-H---TT-CCCEEEECCEEETTSSEEEEEEEETT--SC---EEEE---EECCC-
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-c---CC-EEEcCEecchhHhhhceEEEEEEecc--cc---eehh---hcccc-
Confidence 78999999999999999999999986 4 78 88888766433 23578899999741 11 1111 01000
Q ss_pred CCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCcccccCchhhhhHH-HHH
Q 001400 240 GSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRL-TTG 318 (1085)
Q Consensus 240 ~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqkqRv-sia 318 (1085)
.+. +...+..+|. ....+|||||+++ +++
T Consensus 67 -------------------~~~------------------------------~~~~~~~v~~-~~~~ls~~er~~~~~l~ 96 (189)
T 2i3b_A 67 -------------------EPP------------------------------PGKRECRVGQ-YVVDLTSFEQLALPVLR 96 (189)
T ss_dssp -------------------CCC------------------------------SSSCCEESSS-SEECHHHHHTTTTTTTC
T ss_pred -------------------cCC------------------------------ccccccccce-EEEcchHHHHHHHHHHh
Confidence 000 0001124443 3346999999998 444
Q ss_pred H---HHhCCCcEeEEeC--CCCCCCHHHHHHHHHHHHHHHhccCCEEEE---EEecChhHHHhhcCeEEEecCCeEEEec
Q 001400 319 E---LLVGPARVLFMDE--ISNGLDSSTTYQIIKYLKHSTRALDGTTVI---SLLQPAPEAYELFDDVILLSEGQIVYQG 390 (1085)
Q Consensus 319 ~---al~~~p~vlllDE--ptsgLD~~~~~~i~~~l~~~~~~~~~t~ii---~~~q~~~~~~~~~D~ii~L~~G~iv~~G 390 (1085)
+ |+..+|++++||| |+..+|......|.+.++ . ..++|+ +++|..+ ..+.|+|..+.+|+++...
T Consensus 97 ~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~----~-~~~~ilgti~vsh~~~--~~~vd~i~~~~~~~i~~~~ 169 (189)
T 2i3b_A 97 NADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLS----T-PGTIILGTIPVPKGKP--LALVEEIRNRKDVKVFNVT 169 (189)
T ss_dssp CCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHH----C-SSCCEEEECCCCCSSC--CTTHHHHHTTCCSEEEECC
T ss_pred hhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHHh----C-CCcEEEEEeecCCCCc--hHHHHHHeecCCcEEEEeC
Confidence 4 5789999999999 899999987666665554 2 234443 3336553 3566888888888888643
|
| >1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=99.51 E-value=1.4e-15 Score=173.40 Aligned_cols=168 Identities=21% Similarity=0.202 Sum_probs=99.3
Q ss_pred eecccc-eeeEeCCeEEEEeCCCCCChhHHHHHHHhhh--CCCC-ceeeE-EEECCccCCCCCCCceEEEEccCCCCCCC
Q 001400 149 TILDDL-SGIIRPSRLTLLLGPPSSGKTTLLLALAGRL--GHHL-QVSGK-ITYNGHGFKEFVPPRTSAYVSQQDWQVAE 223 (1085)
Q Consensus 149 ~iL~~v-s~~i~~G~~~~llGp~GsGKSTLL~~L~G~l--~~~~-~~~G~-i~~~G~~~~~~~~~~~~~yv~Q~d~~~~~ 223 (1085)
..|+++ .+.+++|++++|+||||||||||++.|++.. ++.. ...|. |++++.+. ..++.+++++|...+++.
T Consensus 118 ~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~---~~~~~i~~i~q~~~~~~~ 194 (349)
T 1pzn_A 118 KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT---FRPERIREIAQNRGLDPD 194 (349)
T ss_dssp HHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSC---CCHHHHHHHHHTTTCCHH
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCC---CCHHHHHHHHHHcCCCHH
Confidence 456665 6899999999999999999999999999987 3320 11367 78887543 112345666666543333
Q ss_pred CCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCcc
Q 001400 224 MTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEM 303 (1085)
Q Consensus 224 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 303 (1085)
++.+|+.+....
T Consensus 195 -~v~~ni~~~~~~------------------------------------------------------------------- 206 (349)
T 1pzn_A 195 -EVLKHIYVARAF------------------------------------------------------------------- 206 (349)
T ss_dssp -HHGGGEEEEECC-------------------------------------------------------------------
T ss_pred -HHhhCEEEEecC-------------------------------------------------------------------
Confidence 555554332100
Q ss_pred cccCchhhhhHHHHHHHHh-------CCCcEeEEeCCCCCCCHHH------------HHHHHHHHHHHHhccCCEEEEEE
Q 001400 304 LKGISGGQKKRLTTGELLV-------GPARVLFMDEISNGLDSST------------TYQIIKYLKHSTRALDGTTVISL 364 (1085)
Q Consensus 304 ~~~LSGGqkqRvsia~al~-------~~p~vlllDEptsgLD~~~------------~~~i~~~l~~~~~~~~~t~ii~~ 364 (1085)
-|++|++++.++++++ .+|+++++||||++||+.. ..+++..|+++++..+ ++++.+
T Consensus 207 ---~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~-~tvii~ 282 (349)
T 1pzn_A 207 ---NSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYD-IAVFVT 282 (349)
T ss_dssp ---SHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTT-CEEEEE
T ss_pred ---ChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcC-cEEEEE
Confidence 1233444444444444 7899999999999999852 3566677777776544 445556
Q ss_pred ecChhHHHhhcCeEEEecCCeEEEecC
Q 001400 365 LQPAPEAYELFDDVILLSEGQIVYQGP 391 (1085)
Q Consensus 365 ~q~~~~~~~~~D~ii~L~~G~iv~~G~ 391 (1085)
.|........|++......|+++.++.
T Consensus 283 ~h~~~~~~~~~~~~~~~~~G~~l~~~~ 309 (349)
T 1pzn_A 283 NQVQARPDAFFGDPTRPIGGHILAHSA 309 (349)
T ss_dssp EECC---------------CCCCCTTC
T ss_pred cccccccccccCCccccCCcceEeecC
Confidence 676666655666677777787766654
|
| >1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=99.51 E-value=1e-15 Score=174.54 Aligned_cols=138 Identities=20% Similarity=0.161 Sum_probs=93.5
Q ss_pred eEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCee----eeE-EEEcCccCChhcccceEEEEccCCCCCCCCCHHHHH
Q 001400 849 TGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGII----EGD-IYISGYPKRQETFARISGYCEQNDIHSPGLTVLESL 923 (1085)
Q Consensus 849 s~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~----~G~-i~i~g~~~~~~~~~~~~gy~~Q~~~~~~~~tv~e~l 923 (1085)
++.|++|++++|+||||||||||++.|++.....+. .|. |+|++.+.. ..+.+++++|...+.+. ++.+|+
T Consensus 125 ~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~---~~~~i~~i~q~~~~~~~-~v~~ni 200 (349)
T 1pzn_A 125 GGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF---RPERIREIAQNRGLDPD-EVLKHI 200 (349)
T ss_dssp TSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC---CHHHHHHHHHTTTCCHH-HHGGGE
T ss_pred cCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC---CHHHHHHHHHHcCCCHH-HHhhCE
Confidence 578999999999999999999999999985411112 267 889886531 12234455554433222 333332
Q ss_pred HHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHh-------cCCCEEEEeCCC
Q 001400 924 LFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELV-------ANPSIVFMDEPT 996 (1085)
Q Consensus 924 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~-------~~p~illlDEPt 996 (1085)
.+. .. .-|.+|+|++.++++++ .+|++|++||||
T Consensus 201 ~~~-------------------------------~~--------~~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~t 241 (349)
T 1pzn_A 201 YVA-------------------------------RA--------FNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLT 241 (349)
T ss_dssp EEE-------------------------------EC--------CSHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSS
T ss_pred EEE-------------------------------ec--------CChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCch
Confidence 211 00 01466777777777777 689999999999
Q ss_pred CCCCHHH------------HHHHHHHHHHHHH-CCceEEEEecCcc
Q 001400 997 SGLDARA------------AAIVMRTVRNIVN-TGRTIVCTIHQPS 1029 (1085)
Q Consensus 997 sgLD~~~------------~~~i~~~l~~~~~-~g~tvi~~~H~~~ 1029 (1085)
+++|+.. ...+++.|+++++ .|.|||+|+|...
T Consensus 242 a~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~ 287 (349)
T 1pzn_A 242 SHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQA 287 (349)
T ss_dssp TTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC-
T ss_pred HhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEccccc
Confidence 9999852 3556666777664 5899999999864
|
| >2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.50 E-value=1.3e-16 Score=165.44 Aligned_cols=171 Identities=16% Similarity=0.132 Sum_probs=106.4
Q ss_pred CeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCCh-hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCC
Q 001400 855 GVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ-ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPS 933 (1085)
Q Consensus 855 Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~-~~~~~~~gy~~Q~~~~~~~~tv~e~l~~~~~~~~~~ 933 (1085)
|++++|+|+||||||||+++|+|... .+| |.++|++..+ ...++.+||++|+.. ... +++ +.+..
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~---~~G-i~~~g~~~~~~~~~~~~ig~~~~~~~--g~~---~~l---~~~~~-- 66 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK---SSG-VPVDGFYTEEVRQGGRRIGFDVVTLS--GTR---GPL---SRVGL-- 66 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH---HTT-CCCEEEECCEEETTSSEEEEEEEETT--SCE---EEE---EECCC--
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc---cCC-EEEcCEecchhHhhhceEEEEEEecc--cce---ehh---hcccc--
Confidence 78999999999999999999999653 257 8888876543 235678999999751 111 111 00000
Q ss_pred cccHHHHHHHHHHHHHHcCCCc-ccccccCCCCCCCCCHHHHHHH-HHHH---HHhcCCCEEEEeC--CCCCCCHHHHHH
Q 001400 934 EIELETQRAFVEEVMELVELTS-LSGALIGLPGINGLSTEQRKRL-TIAV---ELVANPSIVFMDE--PTSGLDARAAAI 1006 (1085)
Q Consensus 934 ~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~~~~~LS~Gqrqrl-~iA~---aL~~~p~illlDE--PtsgLD~~~~~~ 1006 (1085)
...+ ..+..++..+ ..+|+|||+++ ++++ |++.+|+|||||| ||..+|......
T Consensus 67 ------------------~~~~~~~~~~v~~~~-~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~ 127 (189)
T 2i3b_A 67 ------------------EPPPGKRECRVGQYV-VDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQA 127 (189)
T ss_dssp ------------------CCCSSSCCEESSSSE-ECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHH
T ss_pred ------------------cCCccccccccceEE-EcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHH
Confidence 0000 0011222221 35899999888 4454 6789999999999 899999876555
Q ss_pred HHHHHHHHHHCCceEEE----EecCccHHHHHhcCEEEEEecCcEEEEecCCCCc--hHHHHHHHH
Q 001400 1007 VMRTVRNIVNTGRTIVC----TIHQPSIDIFESFDELLFMKRGGELIYAGPLGSK--SCELIKYFE 1066 (1085)
Q Consensus 1007 i~~~l~~~~~~g~tvi~----~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~~~--~~~~~~~~~ 1066 (1085)
+.++++ ...++|+ ++|+.+. ...|++..+. +|+++...+-..+ .++++++.+
T Consensus 128 l~~~l~----~~~~~ilgti~vsh~~~~---~~vd~i~~~~-~~~i~~~~~~nr~~~~~~i~~~~~ 185 (189)
T 2i3b_A 128 VRQTLS----TPGTIILGTIPVPKGKPL---ALVEEIRNRK-DVKVFNVTKENRNHLLPDIVTCVQ 185 (189)
T ss_dssp HHHHHH----CSSCCEEEECCCCCSSCC---TTHHHHHTTC-CSEEEECCSSSGGGHHHHHHHHHT
T ss_pred HHHHHh----CCCcEEEEEeecCCCCch---HHHHHHeecC-CcEEEEeChHhHHHHHHHHHHHHH
Confidence 555544 4445553 3398642 2346665554 5788876654432 344555443
|
| >1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.50 E-value=1.3e-13 Score=162.32 Aligned_cols=75 Identities=20% Similarity=0.340 Sum_probs=64.2
Q ss_pred ccCchhhhhHHHHHHHHh----CCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEE
Q 001400 305 KGISGGQKKRLTTGELLV----GPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVIL 380 (1085)
Q Consensus 305 ~~LSGGqkqRvsia~al~----~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~ 380 (1085)
..||||||||++||++|+ .+|++++||||+++||+..+..+.+.|+++.. .++++++++|. .+....+|+++.
T Consensus 332 ~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~--~~~~~ii~th~-~~~~~~~d~~~~ 408 (430)
T 1w1w_A 332 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRN--PDLQFIVISLK-NTMFEKSDALVG 408 (430)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCB--TTBEEEEECSC-HHHHTTCSEEEE
T ss_pred ccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhc--CCCEEEEEECC-HHHHHhCCEEEE
Confidence 459999999999999999 68999999999999999999999999998753 24455556676 567889999999
Q ss_pred ec
Q 001400 381 LS 382 (1085)
Q Consensus 381 L~ 382 (1085)
|.
T Consensus 409 ~~ 410 (430)
T 1w1w_A 409 VY 410 (430)
T ss_dssp EE
T ss_pred EE
Confidence 85
|
| >3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B* | Back alignment and structure |
|---|
Probab=99.49 E-value=2.1e-14 Score=180.42 Aligned_cols=155 Identities=13% Similarity=0.133 Sum_probs=99.0
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCCCceEEEEccCCCCCCCCCHH
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVR 227 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 227 (1085)
..|++|+|+.+++|++++|+|||||||||||+++++..-.. ..| . +.+.. .+.++.-+..+..+.+.
T Consensus 660 ~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~a--q~g------~----~vpa~-~~~i~~~d~i~~~ig~~ 726 (918)
T 3thx_B 660 QYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMA--QIG------S----YVPAE-EATIGIVDGIFTRMGAA 726 (918)
T ss_dssp SSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHH--HHT------C----CBSSS-EEEEECCSEEEEEC---
T ss_pred ceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHh--hcC------c----cccch-hhhhhHHHHHHHhCChH
Confidence 46899999999999999999999999999999998753110 011 0 00111 11111111122222222
Q ss_pred HHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCcccccC
Q 001400 228 ETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGI 307 (1085)
Q Consensus 228 E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 307 (1085)
+++. ....++
T Consensus 727 d~l~----------------------------------------------------------------------~~~stf 736 (918)
T 3thx_B 727 DNIY----------------------------------------------------------------------KGRSTF 736 (918)
T ss_dssp -----------------------------------------------------------------------------CCH
T ss_pred HHHH----------------------------------------------------------------------HhHHHh
Confidence 2110 123469
Q ss_pred chhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHH-HHHHHHHhccCCEEEEEEecChhHHHhhcCeEEE-ecCCe
Q 001400 308 SGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQII-KYLKHSTRALDGTTVISLLQPAPEAYELFDDVIL-LSEGQ 385 (1085)
Q Consensus 308 SGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~-~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~-L~~G~ 385 (1085)
|+|++|++.|+++ +.+|+++||||||+|||+.....+. ..++.+.+..+.+ ++.++|+. ++.+++|+.-- +.+++
T Consensus 737 s~em~~~~~il~~-a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~t-vl~vTH~~-el~~l~~~~~~~v~n~~ 813 (918)
T 3thx_B 737 MEELTDTAEIIRK-ATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSL-TLFVTHYP-PVCELEKNYSHQVGNYH 813 (918)
T ss_dssp HHHHHHHHHHHHH-CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCE-EEEECSCG-GGGGHHHHTTTTEEEEE
T ss_pred hHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCe-EEEEeCcH-HHHHHHhhcccceEEEE
Confidence 9999999999999 8999999999999999999999987 6677765543444 45566764 45566665421 34444
Q ss_pred EEE
Q 001400 386 IVY 388 (1085)
Q Consensus 386 iv~ 388 (1085)
+.+
T Consensus 814 ~~~ 816 (918)
T 3thx_B 814 MGF 816 (918)
T ss_dssp EEE
T ss_pred EEE
Confidence 443
|
| >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* | Back alignment and structure |
|---|
Probab=99.49 E-value=2.4e-15 Score=167.61 Aligned_cols=148 Identities=14% Similarity=0.108 Sum_probs=101.5
Q ss_pred CCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCC---------CceEEEEccCCCCCCCCCHHHHH
Q 001400 160 PSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP---------PRTSAYVSQQDWQVAEMTVRETL 230 (1085)
Q Consensus 160 ~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~---------~~~~~yv~Q~d~~~~~lTV~E~l 230 (1085)
+|++++|+||||||||||++.|+|.+.+. +|+|.++|.+...... ++.++|++|++..+|.+||+|++
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~---~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v 177 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNL---GKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAV 177 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTT---TCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc---CCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHH
Confidence 79999999999999999999999999876 8999999988654321 23589999998888889999999
Q ss_pred HHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCcccccCchh
Q 001400 231 DFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGG 310 (1085)
Q Consensus 231 ~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGG 310 (1085)
.++... +. +. .+++..|+.+..+ +-++..
T Consensus 178 ~~~~~~-~~----d~--------------------------------------~llDt~G~~~~~~--------~~~~eL 206 (304)
T 1rj9_A 178 QAMKAR-GY----DL--------------------------------------LFVDTAGRLHTKH--------NLMEEL 206 (304)
T ss_dssp HHHHHH-TC----SE--------------------------------------EEECCCCCCTTCH--------HHHHHH
T ss_pred HHHHhC-CC----CE--------------------------------------EEecCCCCCCchH--------HHHHHH
Confidence 764211 00 00 0011122222111 124455
Q ss_pred hhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecC
Q 001400 311 QKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQP 367 (1085)
Q Consensus 311 qkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~ 367 (1085)
+|||++|||+++.+|+.++| .||+.+..++++.++.+.+..+.+.|+ ++|.
T Consensus 207 s~~r~~iaRal~~~P~~~lL-----vLDa~t~~~~~~~~~~~~~~~~~t~ii-vTh~ 257 (304)
T 1rj9_A 207 KKVKRAIAKADPEEPKEVWL-----VLDAVTGQNGLEQAKKFHEAVGLTGVI-VTKL 257 (304)
T ss_dssp HHHHHHHHHHCTTCCSEEEE-----EEETTBCTHHHHHHHHHHHHHCCSEEE-EECT
T ss_pred HHHHHHHHHhhcCCCCeEEE-----EEcHHHHHHHHHHHHHHHHHcCCcEEE-EECC
Confidence 58999999999999994444 455555556666677665544555555 5554
|
| >1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=6.3e-15 Score=183.71 Aligned_cols=144 Identities=13% Similarity=0.051 Sum_probs=95.1
Q ss_pred CeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCChhcccceEEEEccCCCCCCCCCHH
Q 001400 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVL 920 (1085)
Q Consensus 841 ~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gy~~Q~~~~~~~~tv~ 920 (1085)
+..+++|+|++ ++|++++|+|||||||||||++|+|.... +. .|..+... ...++++.| +++.+++.
T Consensus 594 ~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~----~q---~G~~vpa~--~~~i~~~~~---i~~~~~~~ 660 (800)
T 1wb9_A 594 EPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALM----AY---IGSYVPAQ--KVEIGPIDR---IFTRVGAA 660 (800)
T ss_dssp SCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHH----HT---TTCCBSSS--EEEECCCCE---EEEEEC--
T ss_pred Cceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHH----Hh---cCcccchh--cccceeHHH---HHhhCCHH
Confidence 45689999999 99999999999999999999999984210 00 11111111 123455544 33344444
Q ss_pred HHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCC
Q 001400 921 ESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLD 1000 (1085)
Q Consensus 921 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEPtsgLD 1000 (1085)
|++..+ .+.+|+|+++ ++.+..++.+|+++|||||++|+|
T Consensus 661 d~l~~~---------------------------------------~stf~~e~~~-~~~il~~a~~psLlLLDEp~~Gtd 700 (800)
T 1wb9_A 661 DDLASG---------------------------------------RSTFMVEMTE-TANILHNATEYSLVLMDEIGRGTS 700 (800)
T ss_dssp ------------------------------------------------CHHHHHH-HHHHHHHCCTTEEEEEESCCCCSS
T ss_pred HHHHhh---------------------------------------hhhhhHHHHH-HHHHHHhccCCCEEEEECCCCCCC
Confidence 443210 1246777664 455556789999999999999999
Q ss_pred HHHHHHH-HHHHHHHHH-CCceEEEEecCccHHHHHhcCEE
Q 001400 1001 ARAAAIV-MRTVRNIVN-TGRTIVCTIHQPSIDIFESFDEL 1039 (1085)
Q Consensus 1001 ~~~~~~i-~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~i 1039 (1085)
+.....+ +.+++.+.+ .|.++|++||+++. .+.+|++
T Consensus 701 ~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~el--~~l~d~~ 739 (800)
T 1wb9_A 701 TYDGLSLAWACAENLANKIKALTLFATHYFEL--TQLPEKM 739 (800)
T ss_dssp SSHHHHHHHHHHHHHHHTTCCEEEEECSCGGG--GGHHHHS
T ss_pred hhHHHHHHHHHHHHHHhccCCeEEEEeCCHHH--HHHhhhh
Confidence 8776665 788888877 49999999999753 4556654
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=2e-15 Score=168.67 Aligned_cols=156 Identities=13% Similarity=0.149 Sum_probs=80.7
Q ss_pred ceeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhh-hCCCCceeeEEEECCccCCCCCCCceEEEEccCCCCCCCCC
Q 001400 147 KLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGR-LGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMT 225 (1085)
Q Consensus 147 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~-l~~~~~~~G~i~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lT 225 (1085)
++.+++|+++.| +|+||||||||||+++|+|. +.+. +| |.++|.+.......+.++|++|.+.....+|
T Consensus 10 ~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~---~g-i~~~g~~~~~t~~~~~~~~~~q~~~~~~~lt 79 (301)
T 2qnr_A 10 RKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPE---RV-ISGAAEKIERTVQIEASTVEIEERGVKLRLT 79 (301)
T ss_dssp --------CEEE------EEEEETTSSHHHHHHHHHC----------------------------CEEEEC---CCEEEE
T ss_pred CEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCC---CC-cccCCcccCCcceEeeEEEEecCCCcccCcc
Confidence 346999999998 99999999999999999996 5543 78 8888876543222345789999887788899
Q ss_pred HHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCcccc
Q 001400 226 VRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLK 305 (1085)
Q Consensus 226 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 305 (1085)
|.||..++..... ..+++ ..++++.+. .+ ...+
T Consensus 80 v~Dt~g~~~~~~~-~e~~~-----------------------------------~l~~~l~~~------~~-----~~~~ 112 (301)
T 2qnr_A 80 VVDTPGYGDAINC-RDCFK-----------------------------------TIISYIDEQ------FE-----RYLH 112 (301)
T ss_dssp EEEEC------------CT-----------------------------------THHHHHHHH------HH-----HHHH
T ss_pred hhhhhhhhhhcCc-HHHHH-----------------------------------HHHHHHHHH------HH-----HHHH
Confidence 9999877432100 00000 011111111 11 2345
Q ss_pred cCchhhhhHHHHHHHHhCCCcEeEEeCCCCC-CCHHHHHHHHHHHHHHHhccCCEEEEEEecCh
Q 001400 306 GISGGQKKRLTTGELLVGPARVLFMDEISNG-LDSSTTYQIIKYLKHSTRALDGTTVISLLQPA 368 (1085)
Q Consensus 306 ~LSGGqkqRvsia~al~~~p~vlllDEptsg-LD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~ 368 (1085)
++|||||||+.+||+++ ++++||||++ ||+... +.++++... ...+++...|+.
T Consensus 113 ~~sgg~rqrv~~ara~~----ll~ldePt~~~Ld~~~~----~~l~~l~~~-~~iilV~~K~Dl 167 (301)
T 2qnr_A 113 DESGLNRRHIIDNRVHC----CFYFISPFGHGLKPLDV----AFMKAIHNK-VNIVPVIAKADT 167 (301)
T ss_dssp HHTSSCCTTCCCCCCCE----EEEEECSSSSSCCHHHH----HHHHHHTTT-SCEEEEECCGGG
T ss_pred HhCHHhhhhhhhhhhhh----eeeeecCcccCCCHHHH----HHHHHHHhc-CCEEEEEEeCCC
Confidence 79999999999998875 9999999985 999873 455555432 245555555654
|
| >1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=1.3e-14 Score=179.91 Aligned_cols=132 Identities=17% Similarity=0.140 Sum_probs=94.4
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhC-CCCceeeEEEECCccCCCCCCCceEEEEccCCCCCCCCCH
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLG-HHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTV 226 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~-~~~~~~G~i~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV 226 (1085)
..+++|+|+. |++++|+|||||||||||++|+|... +. .|.+. + .....++|++| +++.+|+
T Consensus 566 ~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~---~G~~v----p----a~~~~i~~v~~---i~~~~~~ 628 (765)
T 1ewq_A 566 EFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQ---VGSFV----P----AEEAHLPLFDG---IYTRIGA 628 (765)
T ss_dssp CCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHT---TTCCB----S----SSEEEECCCSE---EEEECCC
T ss_pred ceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcc---cCcee----e----hhccceeeHHH---hhccCCH
Confidence 4678899998 99999999999999999999999753 22 34321 0 01235677766 4555666
Q ss_pred HHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCccccc
Q 001400 227 RETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKG 306 (1085)
Q Consensus 227 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 306 (1085)
.|++. .+
T Consensus 629 ~d~l~-------------------------------------------------------------------------~g 635 (765)
T 1ewq_A 629 SDDLA-------------------------------------------------------------------------GG 635 (765)
T ss_dssp -------------------------------------------------------------------------------C
T ss_pred HHHHH-------------------------------------------------------------------------hc
Confidence 65542 14
Q ss_pred CchhhhhHHHHHHHH--hCCCcEeEEeCC---CCCCCHHHH-HHHHHHHHHHHhccCCEEEEEEecChhHHHhhc
Q 001400 307 ISGGQKKRLTTGELL--VGPARVLFMDEI---SNGLDSSTT-YQIIKYLKHSTRALDGTTVISLLQPAPEAYELF 375 (1085)
Q Consensus 307 LSGGqkqRvsia~al--~~~p~vlllDEp---tsgLD~~~~-~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~ 375 (1085)
+|+|+++++.+++++ +.+|++++|||| |++||..+. ..+.+.|++ .+.++ +.++|+.+. .+++
T Consensus 636 ~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~----~g~~v-l~~TH~~~l-~~~~ 704 (765)
T 1ewq_A 636 KSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE----RRAYT-LFATHYFEL-TALG 704 (765)
T ss_dssp CSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH----HTCEE-EEECCCHHH-HTCC
T ss_pred ccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHh----CCCEE-EEEeCCHHH-HHhh
Confidence 899999999999999 999999999999 999998875 568888875 23444 446676544 3444
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A | Back alignment and structure |
|---|
Probab=99.46 E-value=4.9e-14 Score=156.01 Aligned_cols=151 Identities=22% Similarity=0.198 Sum_probs=100.1
Q ss_pred EEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCChhcccceEEEEccCCCCCCCCCHHHHHHHhhhhc
Q 001400 851 AFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLESLLFSAWLR 930 (1085)
Q Consensus 851 ~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gy~~Q~~~~~~~~tv~e~l~~~~~~~ 930 (1085)
.+++|++++|+|+||||||||++.+++... .|.+ +.|.+... ...+.|+..++.. ..+.+.+. .+.
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~----~g~~-~~g~~~~~---~~~v~~~~~e~~~---~~~~~r~~---~~g 91 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA----GGPD-LLEVGELP---TGPVIYLPAEDPP---TAIHHRLH---ALG 91 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH----TCCC-TTCCCCCC---CCCEEEEESSSCH---HHHHHHHH---HHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh----cCCC-cCCCccCC---CccEEEEECCCCH---HHHHHHHH---HHH
Confidence 478999999999999999999999997432 2443 23443211 2346676654321 01111111 011
Q ss_pred CCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCC--CCCHHH---HH
Q 001400 931 LPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTS--GLDARA---AA 1005 (1085)
Q Consensus 931 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEPts--gLD~~~---~~ 1005 (1085)
. .... ...+++++.+.+.+..+.. +..||+||+|++ ++++.+|++|++||||+ ++|... ..
T Consensus 92 ~--~~~~----~~~~~~~~~l~l~~~~~~~-----~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~ 157 (279)
T 1nlf_A 92 A--HLSA----EERQAVADGLLIQPLIGSL-----PNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMA 157 (279)
T ss_dssp T--TSCH----HHHHHHHHHEEECCCTTSC-----CCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHH
T ss_pred h--hcCh----hhhhhccCceEEeecCCCC-----cccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHH
Confidence 1 1111 2245667777776655432 356999998765 68889999999999999 999744 47
Q ss_pred HHHHHHHHHH-HCCceEEEEecCcc
Q 001400 1006 IVMRTVRNIV-NTGRTIVCTIHQPS 1029 (1085)
Q Consensus 1006 ~i~~~l~~~~-~~g~tvi~~~H~~~ 1029 (1085)
.+++.|++++ +.|+|||+++|+..
T Consensus 158 ~~~~~L~~l~~~~g~tvi~i~H~~~ 182 (279)
T 1nlf_A 158 QVIGRMEAIAADTGCSIVFLHHASK 182 (279)
T ss_dssp HHHHHHHHHHHHHCCEEEEEEEC--
T ss_pred HHHHHHHHHHHHcCCEEEEEecCCC
Confidence 8888898886 45999999999864
|
| >3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B | Back alignment and structure |
|---|
Probab=99.46 E-value=1.4e-15 Score=185.74 Aligned_cols=165 Identities=19% Similarity=0.161 Sum_probs=108.0
Q ss_pred EEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCC------CCCCCceEEEEccCCCCCCCCCHHHHHHHhhhhc
Q 001400 164 TLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFK------EFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQ 237 (1085)
Q Consensus 164 ~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~------~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~ 237 (1085)
++|+|||||||||||++|+|.+.| ..+|.|+++|.++. ....++.++|++|++.+++.+||+|++.++....
T Consensus 48 iaIvG~nGsGKSTLL~~I~Gl~~P--~~sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~~ 125 (608)
T 3szr_A 48 IAVIGDQSSGKSSVLEALSGVALP--RGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNAI 125 (608)
T ss_dssp EECCCCTTSCHHHHHHHHHSCC---------CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHHHH
T ss_pred EEEECCCCChHHHHHHHHhCCCCC--CCCCeEEEcCEEEEEecCCccccceeEEeeecccccCCCHHHHHHHHHHHHHHh
Confidence 999999999999999999998755 13899999998742 1134568999999999899999999998754321
Q ss_pred CCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCcccccCchhhhhHHHH
Q 001400 238 GVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTT 317 (1085)
Q Consensus 238 ~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqkqRvsi 317 (1085)
+... .++| ++++.+
T Consensus 126 ~~~~---------------------------------------------------------------~~~s---~~~i~l 139 (608)
T 3szr_A 126 AGEG---------------------------------------------------------------MGIS---HELITL 139 (608)
T ss_dssp HCSS---------------------------------------------------------------SCCC---SCCEEE
T ss_pred cCCc---------------------------------------------------------------cccc---hHHHHH
Confidence 1000 0011 111222
Q ss_pred HHHHhCCCcEeEEeCC------CCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChh----HHHhh--------cCeEE
Q 001400 318 GELLVGPARVLFMDEI------SNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAP----EAYEL--------FDDVI 379 (1085)
Q Consensus 318 a~al~~~p~vlllDEp------tsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~----~~~~~--------~D~ii 379 (1085)
+.+....|+++++||| |+|||+....++.+.++++.......+++.++|+.+ ++..+ ...|+
T Consensus 140 ~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~ 219 (608)
T 3szr_A 140 EISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIG 219 (608)
T ss_dssp EEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEE
T ss_pred HhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceEE
Confidence 2222357999999999 999999999999999999765444566666666654 22222 23578
Q ss_pred EecCCeEEEecChhhHH
Q 001400 380 LLSEGQIVYQGPRVSVL 396 (1085)
Q Consensus 380 ~L~~G~iv~~G~~~~~~ 396 (1085)
++..+.++..|+.+++.
T Consensus 220 VlTK~Dlv~~g~~~~~~ 236 (608)
T 3szr_A 220 ILTKPDLVDKGTEDKVV 236 (608)
T ss_dssp EEECGGGSSSSSTTCCC
T ss_pred EecchhhcCcccHHHHH
Confidence 88888888777765444
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.1e-14 Score=156.08 Aligned_cols=167 Identities=14% Similarity=0.143 Sum_probs=103.9
Q ss_pred EEeeeeeE-EEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCChhcccc---eEEEEccCCCCCCCCC
Q 001400 843 QLLVNVTG-AFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFAR---ISGYCEQNDIHSPGLT 918 (1085)
Q Consensus 843 ~~L~~vs~-~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~---~~gy~~Q~~~~~~~~t 918 (1085)
..|+++.+ .+++|++++|+|+||||||||++.|++... ...|.+.+.+.+.......+ ..++.+|....
T Consensus 10 ~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 82 (235)
T 2w0m_A 10 LDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGL--RDGDPCIYVTTEESRDSIIRQAKQFNWDFEEYIE----- 82 (235)
T ss_dssp HHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHH--HHTCCEEEEESSSCHHHHHHHHHHTTCCCGGGBT-----
T ss_pred hHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHH--HCCCeEEEEEcccCHHHHHHHHHHhcchHHHHhh-----
Confidence 34566765 789999999999999999999999997432 12344544333221111000 01111110000
Q ss_pred HHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCC--EEEEeCCC
Q 001400 919 VLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPS--IVFMDEPT 996 (1085)
Q Consensus 919 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~--illlDEPt 996 (1085)
+++. .++......+ .... ....|.++.++...+.+...+|+ +|++||||
T Consensus 83 --~~~~------------------~~~~~~~~~~-----~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~ 133 (235)
T 2w0m_A 83 --KKLI------------------IIDALMKEKE-----DQWS----LVNLTPEELVNKVIEAKQKLGYGKARLVIDSVS 133 (235)
T ss_dssp --TTEE------------------EEECCC---------CTTB----CSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGG
T ss_pred --CCEE------------------EEeccccccC-----ceee----ecCCCHHHHHHHHHHHHHhhCCCceEEEEECch
Confidence 0000 0000000000 0000 12358999998888888888999 99999999
Q ss_pred CCC--CHHHHHHHHHHHHHHHH-CCceEEEEecCcc-------HHHHHhcCEEEEEecC
Q 001400 997 SGL--DARAAAIVMRTVRNIVN-TGRTIVCTIHQPS-------IDIFESFDELLFMKRG 1045 (1085)
Q Consensus 997 sgL--D~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~-------~~~~~~~d~il~l~~g 1045 (1085)
+++ |+.....+++.|+++++ .|.|||+++|+.. ..+...+|++++|++.
T Consensus 134 ~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~ 192 (235)
T 2w0m_A 134 ALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRM 192 (235)
T ss_dssp GGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEEE
T ss_pred HhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEEE
Confidence 888 99999999999999864 5999999999972 1366779999999853
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=1.6e-14 Score=164.34 Aligned_cols=125 Identities=18% Similarity=0.261 Sum_probs=82.4
Q ss_pred EEeCCeEEEEEccCCCChhHHHhhhhCCCCCCee-eeEEEEcCccCChhcccceEEEEccCCCCCCCCCHHHHHHHhhhh
Q 001400 851 AFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGII-EGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLESLLFSAWL 929 (1085)
Q Consensus 851 ~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~-~G~i~i~g~~~~~~~~~~~~gy~~Q~~~~~~~~tv~e~l~~~~~~ 929 (1085)
.+.+|++++|+||||||||||+++|+|... +. .|.|...+.+.. .......+++.|.....
T Consensus 119 ~~~~~g~i~I~GptGSGKTTlL~~l~g~~~--~~~~~~i~t~ed~~e-~~~~~~~~~v~q~~~~~--------------- 180 (356)
T 3jvv_A 119 SDVPRGLVLVTGPTGSGKSTTLAAMLDYLN--NTKYHHILTIEDPIE-FVHESKKCLVNQREVHR--------------- 180 (356)
T ss_dssp HHCSSEEEEEECSTTSCHHHHHHHHHHHHH--HHCCCEEEEEESSCC-SCCCCSSSEEEEEEBTT---------------
T ss_pred HhCCCCEEEEECCCCCCHHHHHHHHHhccc--CCCCcEEEEccCcHH-hhhhccccceeeeeecc---------------
Confidence 678999999999999999999999999654 22 345543332221 01111112222211100
Q ss_pred cCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH
Q 001400 930 RLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMR 1009 (1085)
Q Consensus 930 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEPtsgLD~~~~~~i~~ 1009 (1085)
..++..+ +||+||..+|++|++|||| |.++...
T Consensus 181 -------------------------------------~~~~~~~----~La~aL~~~PdvillDEp~---d~e~~~~--- 213 (356)
T 3jvv_A 181 -------------------------------------DTLGFSE----ALRSALREDPDIILVGEMR---DLETIRL--- 213 (356)
T ss_dssp -------------------------------------TBSCHHH----HHHHHTTSCCSEEEESCCC---SHHHHHH---
T ss_pred -------------------------------------ccCCHHH----HHHHHhhhCcCEEecCCCC---CHHHHHH---
Confidence 1123322 8999999999999999999 6665443
Q ss_pred HHHHHHHCCceEEEEecCccHHHHHhcCEEEEEe
Q 001400 1010 TVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMK 1043 (1085)
Q Consensus 1010 ~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~ 1043 (1085)
+.+.+.+|.|||+|+|+.+. . ..+||++.|.
T Consensus 214 -~~~~~~~G~~vl~t~H~~~~-~-~~~dRli~l~ 244 (356)
T 3jvv_A 214 -ALTAAETGHLVFGTLHTTSA-A-KTIDRVVDVF 244 (356)
T ss_dssp -HHHHHHTTCEEEEEESCSSH-H-HHHHHHHHTS
T ss_pred -HHHHHhcCCEEEEEEccChH-H-HHHHHHhhhc
Confidence 33445679999999999873 3 6788887774
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=99.42 E-value=5.7e-13 Score=142.64 Aligned_cols=78 Identities=15% Similarity=0.057 Sum_probs=62.9
Q ss_pred cCchhhhhHHHHHHHHhCCCc--EeEEeCCCCCC--CHHHHHHHHHHHHHHHhccCCEEEEEEecCh--------hHHHh
Q 001400 306 GISGGQKKRLTTGELLVGPAR--VLFMDEISNGL--DSSTTYQIIKYLKHSTRALDGTTVISLLQPA--------PEAYE 373 (1085)
Q Consensus 306 ~LSGGqkqRvsia~al~~~p~--vlllDEptsgL--D~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~--------~~~~~ 373 (1085)
..|.+|.++...+.+...+|+ ++++||||+++ |+.....+++.|+++++.. +.+++.++|.. +.+.+
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~-~~~vi~~~h~~~~~~~~~~~~~~~ 181 (235)
T 2w0m_A 103 NLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKW-NFTIYATSQYAITTSQAFGFGVEH 181 (235)
T ss_dssp SCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHT-TEEEEEEEC-----------CHHH
T ss_pred CCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhC-CCeEEEEeccCcccccccccchhe
Confidence 358999988888877778999 99999999888 9999999999999987654 45566677777 55888
Q ss_pred hcCeEEEecCC
Q 001400 374 LFDDVILLSEG 384 (1085)
Q Consensus 374 ~~D~ii~L~~G 384 (1085)
++|+|++|+..
T Consensus 182 ~~d~vi~l~~~ 192 (235)
T 2w0m_A 182 VADGIIRFRRM 192 (235)
T ss_dssp HCSEEEEEEEE
T ss_pred eeeEEEEEEEE
Confidence 99999999754
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A | Back alignment and structure |
|---|
Probab=99.41 E-value=3.5e-13 Score=149.09 Aligned_cols=154 Identities=15% Similarity=0.182 Sum_probs=99.1
Q ss_pred eEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCCCceEEEEccCCCCCCCCCHHHHHHHhhhh
Q 001400 157 IIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQC 236 (1085)
Q Consensus 157 ~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~ 236 (1085)
-+++|++++|+||||||||||++.+++.+. .|.+ +.|.+.. ....+.|+..++.. ..+.+.+. ..
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~-----~g~~-~~g~~~~---~~~~v~~~~~e~~~---~~~~~r~~---~~ 90 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA-----GGPD-LLEVGEL---PTGPVIYLPAEDPP---TAIHHRLH---AL 90 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH-----TCCC-TTCCCCC---CCCCEEEEESSSCH---HHHHHHHH---HH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh-----cCCC-cCCCccC---CCccEEEEECCCCH---HHHHHHHH---HH
Confidence 589999999999999999999999998664 3554 2343321 13467888766531 01111110 00
Q ss_pred cCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCcccccCchhhhhHHH
Q 001400 237 QGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLT 316 (1085)
Q Consensus 237 ~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqkqRvs 316 (1085)
+.. ......+.+++.+++.+..+. .+..+|+||++++
T Consensus 91 --------------------g~~-----------------~~~~~~~~~~~~l~l~~~~~~-----~~~~ls~g~~~~i- 127 (279)
T 1nlf_A 91 --------------------GAH-----------------LSAEERQAVADGLLIQPLIGS-----LPNIMAPEWFDGL- 127 (279)
T ss_dssp --------------------HTT-----------------SCHHHHHHHHHHEEECCCTTS-----CCCTTSHHHHHHH-
T ss_pred --------------------Hhh-----------------cChhhhhhccCceEEeecCCC-----CcccCCHHHHHHH-
Confidence 000 001124556777777665443 3456999998875
Q ss_pred HHHHHhCCCcEeEEeCCCC--CCCHHHH---HHHHHHHHHHHhccCCEEEEEEecChhHH
Q 001400 317 TGELLVGPARVLFMDEISN--GLDSSTT---YQIIKYLKHSTRALDGTTVISLLQPAPEA 371 (1085)
Q Consensus 317 ia~al~~~p~vlllDEpts--gLD~~~~---~~i~~~l~~~~~~~~~t~ii~~~q~~~~~ 371 (1085)
++++.+|+++++||||+ ++|.... .++++.|+++++..+.+ |+.++|.....
T Consensus 128 --~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~g~t-vi~i~H~~~~~ 184 (279)
T 1nlf_A 128 --KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCS-IVFLHHASKGA 184 (279)
T ss_dssp --HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCE-EEEEEEC----
T ss_pred --HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHHcCCE-EEEEecCCCcc
Confidence 67888999999999999 9997544 78888999887655555 45566665443
|
| >1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=6.8e-14 Score=174.43 Aligned_cols=156 Identities=11% Similarity=0.030 Sum_probs=101.3
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCCCceEEEEccCCCCCCCCCHH
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVR 227 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 227 (1085)
..+++|+++. ++|++++|+|||||||||||++|+|..... .. |..+.. ....++++.| +++.+++.
T Consensus 595 ~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~--q~------G~~vpa--~~~~i~~~~~---i~~~~~~~ 660 (800)
T 1wb9_A 595 PFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMA--YI------GSYVPA--QKVEIGPIDR---IFTRVGAA 660 (800)
T ss_dssp CCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHH--TT------TCCBSS--SEEEECCCCE---EEEEEC--
T ss_pred ceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHH--hc------Ccccch--hcccceeHHH---HHhhCCHH
Confidence 4689999999 999999999999999999999999974211 01 111110 0123455544 45555665
Q ss_pred HHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCcccccC
Q 001400 228 ETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGI 307 (1085)
Q Consensus 228 E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 307 (1085)
|++..+ ..++
T Consensus 661 d~l~~~----------------------------------------------------------------------~stf 670 (800)
T 1wb9_A 661 DDLASG----------------------------------------------------------------------RSTF 670 (800)
T ss_dssp -------------------------------------------------------------------------------C
T ss_pred HHHHhh----------------------------------------------------------------------hhhh
Confidence 555321 1135
Q ss_pred chhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHH-HHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEecCCeE
Q 001400 308 SGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQI-IKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQI 386 (1085)
Q Consensus 308 SGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i-~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~~G~i 386 (1085)
|+++++ ++.+...+.+|++++||||++|+|+.....+ +..++.+.+..+.+ ++.++|+.+ ...++|++..+.+|++
T Consensus 671 ~~e~~~-~~~il~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~-vl~~TH~~e-l~~l~d~~~~v~n~~~ 747 (800)
T 1wb9_A 671 MVEMTE-TANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKAL-TLFATHYFE-LTQLPEKMEGVANVHL 747 (800)
T ss_dssp HHHHHH-HHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCE-EEEECSCGG-GGGHHHHSTTEEEEEE
T ss_pred hHHHHH-HHHHHHhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCe-EEEEeCCHH-HHHHhhhhhceEEEEE
Confidence 666654 4444556899999999999999999877775 67777776533444 444667654 4568898877888888
Q ss_pred EEec
Q 001400 387 VYQG 390 (1085)
Q Consensus 387 v~~G 390 (1085)
.+..
T Consensus 748 ~~~~ 751 (800)
T 1wb9_A 748 DALE 751 (800)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7654
|
| >3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B | Back alignment and structure |
|---|
Probab=99.40 E-value=2.3e-14 Score=174.99 Aligned_cols=136 Identities=13% Similarity=0.165 Sum_probs=93.2
Q ss_pred EEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCC------hhcccceEEEEccCCCCCCCCCHHHHHHHhhhhcC
Q 001400 858 TALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKR------QETFARISGYCEQNDIHSPGLTVLESLLFSAWLRL 931 (1085)
Q Consensus 858 ~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~------~~~~~~~~gy~~Q~~~~~~~~tv~e~l~~~~~~~~ 931 (1085)
+||+|+||||||||+++|+|...+ ..+|.|.++|.++. ...+++.+||++|++.+++..||+|++.+.....
T Consensus 48 iaIvG~nGsGKSTLL~~I~Gl~~P-~~sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~~- 125 (608)
T 3szr_A 48 IAVIGDQSSGKSSVLEALSGVALP-RGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNAI- 125 (608)
T ss_dssp EECCCCTTSCHHHHHHHHHSCC--------CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHHHH-
T ss_pred EEEECCCCChHHHHHHHHhCCCCC-CCCCeEEEcCEEEEEecCCccccceeEEeeecccccCCCHHHHHHHHHHHHHHh-
Confidence 999999999999999999998642 14899999998741 1346778999999999999999999987642111
Q ss_pred CCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCC------CCCCCHHHHH
Q 001400 932 PSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEP------TSGLDARAAA 1005 (1085)
Q Consensus 932 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEP------tsgLD~~~~~ 1005 (1085)
+... .++| ++++.++++...+|+++++||| |+|||+..+.
T Consensus 126 --------------------~~~~-----------~~~s---~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~ 171 (608)
T 3szr_A 126 --------------------AGEG-----------MGIS---HELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGY 171 (608)
T ss_dssp --------------------HCSS-----------SCCC---SCCEEEEEEESSSCCEEEEECCC------CCSSCSHHH
T ss_pred --------------------cCCc-----------cccc---hHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHH
Confidence 0000 0011 1112223333458999999999 9999999999
Q ss_pred HHHHHHHHHHHC--CceEEEEecCcc
Q 001400 1006 IVMRTVRNIVNT--GRTIVCTIHQPS 1029 (1085)
Q Consensus 1006 ~i~~~l~~~~~~--g~tvi~~~H~~~ 1029 (1085)
.+.++++++.++ +.++++++|+.+
T Consensus 172 ~i~~li~~~l~~~~~iil~vvt~~~d 197 (608)
T 3szr_A 172 KIKTLIKKYIQRQETISLVVVPSNVD 197 (608)
T ss_dssp HHHHHHHHHTTSSSCCEEEEEESSSC
T ss_pred HHHHHHHHHHhcCCCCceEEEeccch
Confidence 999999997543 677889999876
|
| >3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B* | Back alignment and structure |
|---|
Probab=99.39 E-value=6.5e-13 Score=135.17 Aligned_cols=74 Identities=11% Similarity=0.171 Sum_probs=65.0
Q ss_pred CCCCHHHHHHHHHHHHHhc----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEE
Q 001400 967 NGLSTEQRKRLTIAVELVA----NPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFM 1042 (1085)
Q Consensus 967 ~~LS~Gqrqrl~iA~aL~~----~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l 1042 (1085)
..||||||||++||++|+. +|+++||||||+|||+.+...+.+.|+++. .+.++|++||+. ...+.+|+++.+
T Consensus 63 ~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~-~~~~~ivith~~--~~~~~ad~i~~v 139 (173)
T 3kta_B 63 EAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESS-KESQFIVITLRD--VMMANADKIIGV 139 (173)
T ss_dssp GGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSCH--HHHTTCSEEEEE
T ss_pred ccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhc-cCCEEEEEEecH--HHHHhCCEEEEE
Confidence 4699999999999999974 469999999999999999999999999975 457899999995 467889999865
Q ss_pred e
Q 001400 1043 K 1043 (1085)
Q Consensus 1043 ~ 1043 (1085)
.
T Consensus 140 ~ 140 (173)
T 3kta_B 140 S 140 (173)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.39 E-value=1.2e-14 Score=168.48 Aligned_cols=156 Identities=13% Similarity=0.067 Sum_probs=91.2
Q ss_pred cccCCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCChhcccceEEEEccCCCCCCC
Q 001400 837 VLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPG 916 (1085)
Q Consensus 837 ~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gy~~Q~~~~~~~ 916 (1085)
..+++..+++|+||+| +|+|+||||||||+++|+|........|.+.+++.+ ....+.++|++|.+...+.
T Consensus 19 ~~y~~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~---t~~~~~i~~v~q~~~~~~~ 89 (418)
T 2qag_C 19 NQVYRKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKK---TVQVEQSKVLIKEGGVQLL 89 (418)
T ss_dssp CCTTTTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCCCCSCC--------CCEEEEEECC------CEE
T ss_pred eeECCEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCcc---ceeeeeEEEEEecCCcccc
Confidence 3345567899999998 999999999999999999965411112322222211 1123568999998888888
Q ss_pred CCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCC---EEEEe
Q 001400 917 LTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPS---IVFMD 993 (1085)
Q Consensus 917 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~---illlD 993 (1085)
+|+.|++.++..... .. ....+.+.++ ..++.+++||++|||+++.+|+ +|++|
T Consensus 90 Ltv~Dt~g~~~~~~~------~~---~~~~i~~~i~--------------~~~~~~l~qr~~IaRal~~d~~~~vlL~ld 146 (418)
T 2qag_C 90 LTIVDTPGFGDAVDN------SN---CWQPVIDYID--------------SKFEDYLNAESRVNRRQMPDNRVQCCLYFI 146 (418)
T ss_dssp EEEEECC--------------------CHHHHHHHH--------------HHHHHHTTTSCC-CCCCCCCC-CCEEEEEC
T ss_pred eeeeechhhhhhccc------hh---hHHHHHHHHH--------------HHHHHHHHHHHHHHHHhccCCCeeEEEEEe
Confidence 899998876532110 00 0111111110 1356677889999999999999 99999
Q ss_pred CCC-CCCCHHHHHHHHHHHHHHHHCCceEEEEecCcc
Q 001400 994 EPT-SGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPS 1029 (1085)
Q Consensus 994 EPt-sgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~ 1029 (1085)
||| ++||+... ++++.+. .+.+||+++|..+
T Consensus 147 ePt~~~L~~~d~----~~lk~L~-~~v~iIlVinK~D 178 (418)
T 2qag_C 147 APSGHGLKPLDI----EFMKRLH-EKVNIIPLIAKAD 178 (418)
T ss_dssp CC-CCSCCHHHH----HHHHHHT-TTSEEEEEEESTT
T ss_pred cCcccCCCHHHH----HHHHHHh-ccCcEEEEEEccc
Confidence 999 69998773 3444543 3778888888543
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.39 E-value=2.1e-14 Score=165.37 Aligned_cols=176 Identities=19% Similarity=0.168 Sum_probs=111.3
Q ss_pred cCCeEEeeeeeEEEeCCeE--EEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCChhcccceEEEEccCCCCCCC
Q 001400 839 EDRLQLLVNVTGAFRPGVL--TALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPG 916 (1085)
Q Consensus 839 ~~~~~~L~~vs~~i~~Ge~--~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gy~~Q~~~~~~~ 916 (1085)
+++.+ |++||+++++|++ +||+|+||||||||+++|+|..- .|.- +... .....++.++|++|++.+++.
T Consensus 25 y~~~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l----~g~~-~~~~--~~~~~~~~i~~v~Q~~~l~~~ 96 (427)
T 2qag_B 25 FDSLP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF----EGEP-ATHT--QPGVQLQSNTYDLQESNVRLK 96 (427)
T ss_dssp CC--C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC------------C--CSSCEEEEEEEEEEC--CEEE
T ss_pred ECCee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccc----cCCc-CCCC--CccceEeeEEEEeecCccccc
Confidence 34445 8999999999999 99999999999999999999742 1211 1111 112234578999999888888
Q ss_pred CCHHHHHHHhhhhcCCCcccHH----HHHHHHHHHHHHc-CCC----cccccc----c--CCCCCCCCCHHHHHHHHHHH
Q 001400 917 LTVLESLLFSAWLRLPSEIELE----TQRAFVEEVMELV-ELT----SLSGAL----I--GLPGINGLSTEQRKRLTIAV 981 (1085)
Q Consensus 917 ~tv~e~l~~~~~~~~~~~~~~~----~~~~~~~~~l~~~-~l~----~~~~~~----~--~~~~~~~LS~Gqrqrl~iA~ 981 (1085)
+||.|++.|+... ....... ......++.++.. ++. ...+.. + -.+...+|+..+ +.|++
T Consensus 97 ltv~D~~~~g~~~--~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D---ieilk 171 (427)
T 2qag_B 97 LTIVSTVGFGDQI--NKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD---LVTMK 171 (427)
T ss_dssp EEEEEEECCCC-C--CHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH---HHHHH
T ss_pred cchhhhhhhhhcc--ccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH---HHHHH
Confidence 9999998765321 0000000 1122334444443 332 111211 1 012223577666 78999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHH-HHHCCceEEEEecC
Q 001400 982 ELVANPSIVFMDEPTSGLDARAAAIVMRTVRN-IVNTGRTIVCTIHQ 1027 (1085)
Q Consensus 982 aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~-~~~~g~tvi~~~H~ 1027 (1085)
+|..+++||++||||..|.+.....+.+.|++ +...|.+|+.++.+
T Consensus 172 ~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~ 218 (427)
T 2qag_B 172 KLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTD 218 (427)
T ss_dssp HTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC--
T ss_pred HHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCC
Confidence 99999999999999999999999999999997 76779999998865
|
| >4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.37 E-value=5.5e-13 Score=160.46 Aligned_cols=76 Identities=20% Similarity=0.287 Sum_probs=69.9
Q ss_pred CCC-CHHHHHHHHHHHHHhcCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEe
Q 001400 967 NGL-STEQRKRLTIAVELVANP--SIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMK 1043 (1085)
Q Consensus 967 ~~L-S~Gqrqrl~iA~aL~~~p--~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~ 1043 (1085)
..| |||||||++||++|+.+| ++|||||||+|||+.++..|.+.|+++.+ |.|||+|||+++ +...||++++|.
T Consensus 395 ~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~-~~~vi~itH~~~--~~~~~d~~~~~~ 471 (517)
T 4ad8_A 395 SDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD-TRQVLVVTHLAQ--IAARAHHHYKVE 471 (517)
T ss_dssp SSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH-HSEEEEECCCHH--HHHHSSEEEEEE
T ss_pred HhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC-CCEEEEEecCHH--HHHhCCEEEEEe
Confidence 357 999999999999999999 99999999999999999999999999986 899999999975 456799999996
Q ss_pred cC
Q 001400 1044 RG 1045 (1085)
Q Consensus 1044 ~g 1045 (1085)
++
T Consensus 472 ~~ 473 (517)
T 4ad8_A 472 KQ 473 (517)
T ss_dssp CC
T ss_pred cc
Confidence 53
|
| >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=8.6e-14 Score=147.81 Aligned_cols=148 Identities=16% Similarity=0.166 Sum_probs=98.7
Q ss_pred eeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCCCceEEEEccCCCCCCCCCH----HHHHH
Q 001400 156 GIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTV----RETLD 231 (1085)
Q Consensus 156 ~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV----~E~l~ 231 (1085)
-..++|++++|+||||||||||+++|+|.+++. ...|.|.+.+.+.... .++.++|++|++..|+.+|+ .|++.
T Consensus 11 ~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~-~~~g~v~~ttr~~~~~-e~~gi~y~fq~~~~f~~~~~~~~f~E~~~ 88 (219)
T 1s96_A 11 HHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLY-DTQVSVSHTTRQPRPG-EVHGEHYFFVNHDEFKEMISRDAFLEHAE 88 (219)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHSCTT-TEEECCCEECSCCCTT-CCBTTTBEECCHHHHHHHHHTTCEEEEEE
T ss_pred ccCCCCcEEEEECCCCCCHHHHHHHHhccCCCC-ceEEEEEecCCCCCcc-cccCceEEECCHHHHHHHHhcCHHHHHHH
Confidence 357899999999999999999999999998752 4689999998765432 23467899998765554444 22221
Q ss_pred HhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCcccccCchhh
Q 001400 232 FAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQ 311 (1085)
Q Consensus 232 f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGq 311 (1085)
+. |+ +.|-.
T Consensus 89 ~~------------------------------------------------------------------~~-----~yg~~ 97 (219)
T 1s96_A 89 VF------------------------------------------------------------------GN-----YYGTS 97 (219)
T ss_dssp ET------------------------------------------------------------------TE-----EEEEE
T ss_pred HH------------------------------------------------------------------hc-----cCCCC
Confidence 11 10 11111
Q ss_pred hhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEecCCeEEEecC
Q 001400 312 KKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQGP 391 (1085)
Q Consensus 312 kqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~~G~iv~~G~ 391 (1085)
+++ .+.++..+++++|| ||+.++.++.+.+. .+.+|+.+.|+..++.. |+ +..| .++
T Consensus 98 ~~~---v~~~l~~G~illLD-----LD~~~~~~i~~~l~------~~~tI~i~th~~~~l~~---Rl--~~rG----~~~ 154 (219)
T 1s96_A 98 REA---IEQVLATGVDVFLD-----IDWQGAQQIRQKMP------HARSIFILPPSKIELDR---RL--RGRG----QDS 154 (219)
T ss_dssp HHH---HHHHHTTTCEEEEE-----CCHHHHHHHHHHCT------TCEEEEEECSSHHHHHH---HH--HTTS----CSC
T ss_pred HHH---HHHHHhcCCeEEEE-----ECHHHHHHHHHHcc------CCEEEEEECCCHHHHHH---HH--HHcC----CCC
Confidence 221 33444557999999 99999999998775 25667767787777655 43 6777 677
Q ss_pred hhhHHHHH
Q 001400 392 RVSVLDFF 399 (1085)
Q Consensus 392 ~~~~~~~f 399 (1085)
.+++..-+
T Consensus 155 ~e~i~~rl 162 (219)
T 1s96_A 155 EEVIAKRM 162 (219)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77776544
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.35 E-value=1.5e-14 Score=152.61 Aligned_cols=164 Identities=15% Similarity=0.039 Sum_probs=88.7
Q ss_pred EeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCC---CCeeeeEEEEcCccCChhcccceEEEEccCCCCC----CC
Q 001400 844 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKT---GGIIEGDIYISGYPKRQETFARISGYCEQNDIHS----PG 916 (1085)
Q Consensus 844 ~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~---~~~~~G~i~i~g~~~~~~~~~~~~gy~~Q~~~~~----~~ 916 (1085)
++++ +.+.+|.+++|+|+||||||||++.|+|... ..+..|.+.+.+.-. .....- +.+.+.+. +.
T Consensus 17 ~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~----~~~~~~-l~Dt~G~~~~~~~~ 89 (210)
T 1pui_A 17 DIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFE----VADGKR-LVDLPGYGYAEVPE 89 (210)
T ss_dssp SGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEE----EETTEE-EEECCCCC------
T ss_pred CHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEE----ecCCEE-EEECcCCcccccCH
Confidence 4455 7789999999999999999999999999651 013345443211100 000000 00111110 00
Q ss_pred CC---HHHHHHHhhhh-cC--------CCcccHHHHHHHHHHHHHHcCCCcc--cccccCCCCCCCCCHHHHHH-HHHHH
Q 001400 917 LT---VLESLLFSAWL-RL--------PSEIELETQRAFVEEVMELVELTSL--SGALIGLPGINGLSTEQRKR-LTIAV 981 (1085)
Q Consensus 917 ~t---v~e~l~~~~~~-~~--------~~~~~~~~~~~~~~~~l~~~~l~~~--~~~~~~~~~~~~LS~Gqrqr-l~iA~ 981 (1085)
.. .+..+...... +. ............+.+.++..++..+ .++ ...+|+||||| +..++
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK------~D~~s~~~~~~~~~~~~ 163 (210)
T 1pui_A 90 EMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTK------ADKLASGARKAQLNMVR 163 (210)
T ss_dssp CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEEC------GGGSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEec------ccCCCchhHHHHHHHHH
Confidence 00 11111111000 00 0000001112233445555555432 222 23589999999 89999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCce
Q 001400 982 ELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRT 1020 (1085)
Q Consensus 982 aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~t 1020 (1085)
+++.+|.++++|||||++|......+++.|.++..+|.|
T Consensus 164 ~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~~~~ 202 (210)
T 1pui_A 164 EAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFSEMQP 202 (210)
T ss_dssp HHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC----
T ss_pred HHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHhhccc
Confidence 999999999999999999999999999999998755544
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=4.1e-13 Score=152.73 Aligned_cols=59 Identities=15% Similarity=0.193 Sum_probs=43.4
Q ss_pred HHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEecCC
Q 001400 316 TTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEG 384 (1085)
Q Consensus 316 sia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~~G 384 (1085)
+||++|..+|+++++|||+ |..+...+.+ .+. .|.+ +++++|..+.+ +.+||++.|..|
T Consensus 188 ~La~aL~~~PdvillDEp~---d~e~~~~~~~----~~~-~G~~-vl~t~H~~~~~-~~~dRli~l~~~ 246 (356)
T 3jvv_A 188 ALRSALREDPDIILVGEMR---DLETIRLALT----AAE-TGHL-VFGTLHTTSAA-KTIDRVVDVFPA 246 (356)
T ss_dssp HHHHHTTSCCSEEEESCCC---SHHHHHHHHH----HHH-TTCE-EEEEESCSSHH-HHHHHHHHTSCH
T ss_pred HHHHHhhhCcCEEecCCCC---CHHHHHHHHH----HHh-cCCE-EEEEEccChHH-HHHHHHhhhcCc
Confidence 8999999999999999999 6666444433 333 3455 55566666655 889999998654
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=99.34 E-value=2.8e-15 Score=172.57 Aligned_cols=164 Identities=16% Similarity=0.064 Sum_probs=97.2
Q ss_pred ecccceeeEeC--CeEEEEeCCCCCChhHHHHHHHhhhCCCCcee----eEEEEC----CccCCCCCCC--ceEEEEccC
Q 001400 150 ILDDLSGIIRP--SRLTLLLGPPSSGKTTLLLALAGRLGHHLQVS----GKITYN----GHGFKEFVPP--RTSAYVSQQ 217 (1085)
Q Consensus 150 iL~~vs~~i~~--G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~----G~i~~~----G~~~~~~~~~--~~~~yv~Q~ 217 (1085)
+.+.|+..+++ |+.++|+||||||||||+++|+|.+++. + |+|.++ |.+. ..... +.++|++|+
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~---~~~e~G~i~i~~~~~~~~~-~~~~~~~~~I~~~~q~ 232 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTT---SAWEYGREFVFEKLGGDEQ-AMQYSDYPQMALGHQR 232 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCE---EECCTTHHHHHHSSSSCTT-SSCTTTHHHHHHHHHH
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCC---cchhhHHHHHHhhcCCCcc-cCChhHHHHHHHHHHH
Confidence 46789999999 9999999999999999999999998774 6 776653 2221 00000 112222222
Q ss_pred CCCCCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccc
Q 001400 218 DWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADT 297 (1085)
Q Consensus 218 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 297 (1085)
... ...|++|||.|. ..+..++
T Consensus 233 ~~~-~~~t~~~nl~~~---------------------------------------------------------~~~~~~~ 254 (365)
T 1lw7_A 233 YID-YAVRHSHKIAFI---------------------------------------------------------DTDFITT 254 (365)
T ss_dssp HHH-HHHHHCSSEEEE---------------------------------------------------------SSCHHHH
T ss_pred HHH-HHHhccCCEEEE---------------------------------------------------------eCCchHH
Confidence 110 011111111110 0000011
Q ss_pred cccCcccccCchhhhhHHHHHHHHh-CCCcEeEEeC---CC------CCCCHHHHHHHHHHHHHHHhccCCEEEEEEecC
Q 001400 298 LVGDEMLKGISGGQKKRLTTGELLV-GPARVLFMDE---IS------NGLDSSTTYQIIKYLKHSTRALDGTTVISLLQP 367 (1085)
Q Consensus 298 ~vg~~~~~~LSGGqkqRvsia~al~-~~p~vlllDE---pt------sgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~ 367 (1085)
....+|+|+++|..+++++. .+|+++|||| |+ .++|...+..+.+.|+++.+..+.++++ +.++
T Consensus 255 -----~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ili-lde~ 328 (365)
T 1lw7_A 255 -----QAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIE-IESP 328 (365)
T ss_dssp -----HHHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHHHHHHHGGGCCCEE-EECS
T ss_pred -----HHHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEE-eCCC
Confidence 11236677788888888775 5899999999 65 5899999999999998876543444444 5555
Q ss_pred hhHHHhhcCeEEEec
Q 001400 368 APEAYELFDDVILLS 382 (1085)
Q Consensus 368 ~~~~~~~~D~ii~L~ 382 (1085)
.+...++|.+.+++
T Consensus 329 -~~~~r~~~~i~~i~ 342 (365)
T 1lw7_A 329 -SYLDRYNQVKAVIE 342 (365)
T ss_dssp -SHHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHHH
Confidence 35555666655554
|
| >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=3.5e-14 Score=150.80 Aligned_cols=126 Identities=20% Similarity=0.164 Sum_probs=85.2
Q ss_pred EEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCChhcccceEEEEccCCCCCCCCCH----HHHHHHh
Q 001400 851 AFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTV----LESLLFS 926 (1085)
Q Consensus 851 ~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gy~~Q~~~~~~~~tv----~e~l~~~ 926 (1085)
..++|++++|+||||||||||+++|+|..++....|.|.+.+.+.+.. .++.++|++|++..++.+++ .|++.+.
T Consensus 12 ~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~~-e~~gi~y~fq~~~~f~~~~~~~~f~E~~~~~ 90 (219)
T 1s96_A 12 HMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPG-EVHGEHYFFVNHDEFKEMISRDAFLEHAEVF 90 (219)
T ss_dssp ---CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTT-CCBTTTBEECCHHHHHHHHHTTCEEEEEEET
T ss_pred cCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCcc-cccCceEEECCHHHHHHHHhcCHHHHHHHHH
Confidence 457999999999999999999999999754213678999988765432 24457889886544333222 1211110
Q ss_pred hhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHH
Q 001400 927 AWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAI 1006 (1085)
Q Consensus 927 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEPtsgLD~~~~~~ 1006 (1085)
. ... +.| ++. +.+++..++++||| ||+.++..
T Consensus 91 ~-------------------------------~~y------g~~---~~~---v~~~l~~G~illLD-----LD~~~~~~ 122 (219)
T 1s96_A 91 G-------------------------------NYY------GTS---REA---IEQVLATGVDVFLD-----IDWQGAQQ 122 (219)
T ss_dssp T-------------------------------EEE------EEE---HHH---HHHHHTTTCEEEEE-----CCHHHHHH
T ss_pred h-------------------------------ccC------CCC---HHH---HHHHHhcCCeEEEE-----ECHHHHHH
Confidence 0 000 111 111 34455668999999 99999999
Q ss_pred HHHHHHHHHHCCceEEEEecCcc
Q 001400 1007 VMRTVRNIVNTGRTIVCTIHQPS 1029 (1085)
Q Consensus 1007 i~~~l~~~~~~g~tvi~~~H~~~ 1029 (1085)
+++.+. .+.||++++|+++
T Consensus 123 i~~~l~----~~~tI~i~th~~~ 141 (219)
T 1s96_A 123 IRQKMP----HARSIFILPPSKI 141 (219)
T ss_dssp HHHHCT----TCEEEEEECSSHH
T ss_pred HHHHcc----CCEEEEEECCCHH
Confidence 998876 5899999999975
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=1.3e-11 Score=130.93 Aligned_cols=152 Identities=20% Similarity=0.182 Sum_probs=95.8
Q ss_pred eeeee-EEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCChhcccceEEEEccCCCCCCCCCHHHHH
Q 001400 845 LVNVT-GAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLESL 923 (1085)
Q Consensus 845 L~~vs-~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gy~~Q~~~~~~~~tv~e~l 923 (1085)
|+++. +.+++|++++|+|+||||||||++.|++ ..+ .+-++++.. .. .+. +.+
T Consensus 9 LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~-~~~---~~v~~i~~~-----------------~~----~~~-~~~ 62 (220)
T 2cvh_A 9 LDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL-LSG---KKVAYVDTE-----------------GG----FSP-ERL 62 (220)
T ss_dssp HHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH-HHC---SEEEEEESS-----------------CC----CCH-HHH
T ss_pred HHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH-HcC---CcEEEEECC-----------------CC----CCH-HHH
Confidence 34444 3689999999999999999999999998 221 233444332 11 111 111
Q ss_pred HHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHH--HHHHHHHHHHHhcC-CCEEEEeCCCCCCC
Q 001400 924 LFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTE--QRKRLTIAVELVAN-PSIVFMDEPTSGLD 1000 (1085)
Q Consensus 924 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~G--qrqrl~iA~aL~~~-p~illlDEPtsgLD 1000 (1085)
.- .... ..... +++++.+.+ ..+|++ +++++..+++++.+ |+++++||||+.+|
T Consensus 63 ~~--~~~~-~~~~~-------~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~ 119 (220)
T 2cvh_A 63 VQ--MAET-RGLNP-------EEALSRFIL-------------FTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYR 119 (220)
T ss_dssp HH--HHHT-TTCCH-------HHHHHHEEE-------------ECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTT
T ss_pred HH--HHHh-cCCCh-------HHHhhcEEE-------------EecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhh
Confidence 10 0000 00111 122222211 123333 46788999999986 99999999999999
Q ss_pred HHH--------HHHHHHHHHHHHHC-CceEEEEecCccH------------HHHHhcCEEEEEecC
Q 001400 1001 ARA--------AAIVMRTVRNIVNT-GRTIVCTIHQPSI------------DIFESFDELLFMKRG 1045 (1085)
Q Consensus 1001 ~~~--------~~~i~~~l~~~~~~-g~tvi~~~H~~~~------------~~~~~~d~il~l~~g 1045 (1085)
+.. ...+++.|++++++ |.|||+++|.... .+...+|.+++|.+.
T Consensus 120 ~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 120 AEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp GGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred hcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence 733 34566667777654 8999999997541 355679999999864
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=4.4e-12 Score=134.61 Aligned_cols=77 Identities=12% Similarity=0.059 Sum_probs=57.5
Q ss_pred Cchhh--hhHHHHHHHHhCC-CcEeEEeCCCCCCCHHH--------HHHHHHHHHHHHhccCCEEEEEEecChh------
Q 001400 307 ISGGQ--KKRLTTGELLVGP-ARVLFMDEISNGLDSST--------TYQIIKYLKHSTRALDGTTVISLLQPAP------ 369 (1085)
Q Consensus 307 LSGGq--kqRvsia~al~~~-p~vlllDEptsgLD~~~--------~~~i~~~l~~~~~~~~~t~ii~~~q~~~------ 369 (1085)
.|+++ ++++..+++++.+ |+++++||||+++|... ..++++.|+++++..+.++++ ++|...
T Consensus 85 ~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~-~~h~~~~~~~~~ 163 (220)
T 2cvh_A 85 PSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEENRSGLIAELSRQLQVLLWIARKHNIPVIV-INQVHFDSRTEM 163 (220)
T ss_dssp CTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEE-EECSSSSCTTSS
T ss_pred cCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEE-EeeEEEcCCCCc
Confidence 55554 5678888899986 99999999999999732 355667788887765656554 556543
Q ss_pred -------HHHhhcCeEEEecCC
Q 001400 370 -------EAYELFDDVILLSEG 384 (1085)
Q Consensus 370 -------~~~~~~D~ii~L~~G 384 (1085)
.+...+|.|++|+..
T Consensus 164 ~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 164 TKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp CCSCCCHHHHHTSSEEEEEEEC
T ss_pred cccCCCcceeecCcEEEEEEEe
Confidence 567899999999754
|
| >3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B* | Back alignment and structure |
|---|
Probab=99.31 E-value=4.6e-12 Score=128.89 Aligned_cols=79 Identities=22% Similarity=0.355 Sum_probs=64.6
Q ss_pred cccCchhhhhHHHHHHHHh----CCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEE
Q 001400 304 LKGISGGQKKRLTTGELLV----GPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVI 379 (1085)
Q Consensus 304 ~~~LSGGqkqRvsia~al~----~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii 379 (1085)
+..||||||||++||++++ .+|++++|||||+|||+.+...+.+.|+++.. +.+ +++++|+ ..+...+|+++
T Consensus 62 ~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~--~~~-~ivith~-~~~~~~ad~i~ 137 (173)
T 3kta_B 62 IEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSK--ESQ-FIVITLR-DVMMANADKII 137 (173)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT--TSE-EEEECSC-HHHHTTCSEEE
T ss_pred cccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhcc--CCE-EEEEEec-HHHHHhCCEEE
Confidence 4579999999999999996 66899999999999999999999999998754 344 4445555 45778999998
Q ss_pred Ee--cCCeE
Q 001400 380 LL--SEGQI 386 (1085)
Q Consensus 380 ~L--~~G~i 386 (1085)
.+ .+|..
T Consensus 138 ~v~~~~g~s 146 (173)
T 3kta_B 138 GVSMRDGVS 146 (173)
T ss_dssp EEEEETTEE
T ss_pred EEEecCCEE
Confidence 66 45643
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.30 E-value=8.2e-15 Score=152.28 Aligned_cols=169 Identities=11% Similarity=0.064 Sum_probs=108.1
Q ss_pred CeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCCCceEEEEccCCCCCCCCCHHHHHHHhhhhcCCC
Q 001400 161 SRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVG 240 (1085)
Q Consensus 161 G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~ 240 (1085)
|++++|+||||||||||+++|++.. +|.+.++|.++... ...++++|.....+.+|+++++.+.++...
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~~~------~g~~~i~~d~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-- 70 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAAQL------DNSAYIEGDIINHM---VVGGYRPPWESDELLALTWKNITDLTVNFL-- 70 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHS------SSEEEEEHHHHHTT---CCTTCCCGGGCHHHHHHHHHHHHHHHHHHH--
T ss_pred CeEEEEECCCCCcHHHHHHHHhccc------CCeEEEcccchhhh---hccccccCccchhHHHHHHHHHHHHHHHHH--
Confidence 6899999999999999999999732 68899998765332 234677776654556788888876432110
Q ss_pred CchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccC---cccccC--chhhhhHH
Q 001400 241 SKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGD---EMLKGI--SGGQKKRL 315 (1085)
Q Consensus 241 ~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~---~~~~~L--SGGqkqRv 315 (1085)
..+ -....+...+. +..+.+ |+|+++++
T Consensus 71 --------------~~~---------------------------------~~~ild~~~~~~~~~~~~~~~~s~g~~~~~ 103 (189)
T 2bdt_A 71 --------------LAQ---------------------------------NDVVLDYIAFPDEAEALAQTVQAKVDDVEI 103 (189)
T ss_dssp --------------HTT---------------------------------CEEEEESCCCHHHHHHHHHHHHHHCSSEEE
T ss_pred --------------hcC---------------------------------CcEEEeeccCHHHHHHHHHHHHhcccCCCe
Confidence 000 00000000000 011234 89999998
Q ss_pred HHHH------HHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecC-hhHHHhhcCeEEEecCCeEEE
Q 001400 316 TTGE------LLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQP-APEAYELFDDVILLSEGQIVY 388 (1085)
Q Consensus 316 sia~------al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~-~~~~~~~~D~ii~L~~G~iv~ 388 (1085)
.++. +++.+++...+|+ +||+..... ++.++.+.. .+.+ ++..+|. .+++.+++|+|+ .+|+++.
T Consensus 104 ~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~-~~~~~~~~~-~~~~-ii~tsh~~~~~~e~~~~~i~--~~g~~~~ 175 (189)
T 2bdt_A 104 RFIILWTNREELLRRDALRKKDE---QMGERCLEL-VEEFESKGI-DERY-FYNTSHLQPTNLNDIVKNLK--TNPRFIF 175 (189)
T ss_dssp EEEEEECCHHHHHHHTTTSCC-------CGGGGHH-HHHHHHTTC-CTTS-EEECSSSCGGGHHHHHHHHH--HCGGGSC
T ss_pred EEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH-HHHHhhcCC-CccE-EEeCCCCChhhHHHHHHHHh--hCCcEEE
Confidence 8877 8899998888884 899988777 777776643 2334 4445566 788999999999 9999999
Q ss_pred ecChhhH
Q 001400 389 QGPRVSV 395 (1085)
Q Consensus 389 ~G~~~~~ 395 (1085)
.|+++-+
T Consensus 176 ~~~~~~~ 182 (189)
T 2bdt_A 176 CMAGDPL 182 (189)
T ss_dssp C------
T ss_pred eecCCch
Confidence 9987644
|
| >1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A | Back alignment and structure |
|---|
Probab=99.28 E-value=2e-13 Score=137.18 Aligned_cols=78 Identities=18% Similarity=0.055 Sum_probs=65.6
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCCCceEEEEccCCCCCCCCCHH
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVR 227 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 227 (1085)
..+++++|+.+++|++++|+||||||||||+++|+|.+ +. +|+|.++|.++......+ .|++|+..++ .+||.
T Consensus 20 ~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~---~G~V~~~g~~i~~~~~~~--~~~~q~~~l~-~ltv~ 92 (158)
T 1htw_A 20 KFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GH---QGNVKSPTYTLVEEYNIA--GKMIYHFDLY-RLADP 92 (158)
T ss_dssp HHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TC---CSCCCCCTTTCEEEEEET--TEEEEEEECT-TCSCT
T ss_pred HHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CC---CCeEEECCEeeeeeccCC--Ccceeccccc-cCCcH
Confidence 35899999999999999999999999999999999998 65 899999998764211111 2899998777 89999
Q ss_pred HHHHH
Q 001400 228 ETLDF 232 (1085)
Q Consensus 228 E~l~f 232 (1085)
|++.+
T Consensus 93 e~l~~ 97 (158)
T 1htw_A 93 EELEF 97 (158)
T ss_dssp THHHH
T ss_pred HHHHH
Confidence 99965
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=5.2e-13 Score=153.34 Aligned_cols=126 Identities=17% Similarity=0.290 Sum_probs=88.9
Q ss_pred EeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCee-eeEEEEcCccCChhcccceEEEEccCCCCCCCCCHHHH
Q 001400 844 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGII-EGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLES 922 (1085)
Q Consensus 844 ~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~-~G~i~i~g~~~~~~~~~~~~gy~~Q~~~~~~~~tv~e~ 922 (1085)
+|++++ +++|++++|+||||||||||+++|+|... +. +|.|.+.|.+.. ...+..++|++|..
T Consensus 127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~--~~~~g~I~~~e~~~e-~~~~~~~~~v~Q~~----------- 190 (372)
T 2ewv_A 127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYIN--QTKSYHIITIEDPIE-YVFKHKKSIVNQRE----------- 190 (372)
T ss_dssp SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHH--HHSCCEEEEEESSCC-SCCCCSSSEEEEEE-----------
T ss_pred HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcC--cCCCcEEEEecccHh-hhhccCceEEEeee-----------
Confidence 566665 78999999999999999999999999654 23 688877665543 12334456666631
Q ss_pred HHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHH
Q 001400 923 LLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDAR 1002 (1085)
Q Consensus 923 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEPtsgLD~~ 1002 (1085)
+++. +..| +.+|+++|..+|++|++|||+ |++
T Consensus 191 ----------------------------~g~~-----------~~~~------~~~l~~~L~~~pd~illdE~~---d~e 222 (372)
T 2ewv_A 191 ----------------------------VGED-----------TKSF------ADALRAALREDPDVIFVGEMR---DLE 222 (372)
T ss_dssp ----------------------------BTTT-----------BSCS------HHHHHHHTTSCCSEEEESCCC---SHH
T ss_pred ----------------------------cCCC-----------HHHH------HHHHHHHhhhCcCEEEECCCC---CHH
Confidence 1111 0134 458999999999999999999 776
Q ss_pred HHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEE
Q 001400 1003 AAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDEL 1039 (1085)
Q Consensus 1003 ~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i 1039 (1085)
+.. .+++. +..|.+|++|+|+.+ ..+.+||+
T Consensus 223 ~~~---~~l~~-~~~g~~vi~t~H~~~--~~~~~~rl 253 (372)
T 2ewv_A 223 TVE---TALRA-AETGHLVFGTLHTNT--AIDTIHRI 253 (372)
T ss_dssp HHH---HHHHH-HTTTCEEEECCCCCS--HHHHHHHH
T ss_pred HHH---HHHHH-HhcCCEEEEEECcch--HHHHHHHH
Confidence 643 34444 356999999999865 34445554
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.26 E-value=7.5e-13 Score=153.38 Aligned_cols=149 Identities=13% Similarity=0.114 Sum_probs=84.2
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCCCceEEEEccCCCCCCCCCHH
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVR 227 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 227 (1085)
+.+++|+|+.| +|+||||||||||+++|+|...+... .|.+.+++.+ ....+.++|++|++..++.+||.
T Consensus 24 ~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~-~~~~~~~~~~---t~~~~~i~~v~q~~~~~~~Ltv~ 93 (418)
T 2qag_C 24 KSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPE-YPGPSHRIKK---TVQVEQSKVLIKEGGVQLLLTIV 93 (418)
T ss_dssp TTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCC-CCSCC--------CCEEEEEECC------CEEEEEE
T ss_pred EEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCC-CCCcccCCcc---ceeeeeEEEEEecCCcccceeee
Confidence 46999999998 99999999999999999998653211 2222221110 01124578999998888889999
Q ss_pred HHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCcccccC
Q 001400 228 ETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGI 307 (1085)
Q Consensus 228 E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 307 (1085)
||+.|+..... .. .. ...++++ + ..+
T Consensus 94 Dt~g~~~~~~~-~~---------------------~~--------------~~i~~~i-~-----------------~~~ 119 (418)
T 2qag_C 94 DTPGFGDAVDN-SN---------------------CW--------------QPVIDYI-D-----------------SKF 119 (418)
T ss_dssp ECC---------------------------------C--------------HHHHHHH-H-----------------HHH
T ss_pred echhhhhhccc-hh---------------------hH--------------HHHHHHH-H-----------------HHH
Confidence 99877532110 00 00 0001111 0 136
Q ss_pred chhhhhHHHHHHHHhCCCc---EeEEeCCC-CCCCHHHHHHHHHHHHHHHhccCCEEEEEEec
Q 001400 308 SGGQKKRLTTGELLVGPAR---VLFMDEIS-NGLDSSTTYQIIKYLKHSTRALDGTTVISLLQ 366 (1085)
Q Consensus 308 SGGqkqRvsia~al~~~p~---vlllDEpt-sgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q 366 (1085)
+.++++|++|||+++.+|+ ++++|||| +|||+... +.++.+.. +..+|+++++
T Consensus 120 ~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~----~~lk~L~~--~v~iIlVinK 176 (418)
T 2qag_C 120 EDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDI----EFMKRLHE--KVNIIPLIAK 176 (418)
T ss_dssp HHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHH----HHHHHHTT--TSEEEEEEES
T ss_pred HHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHH----HHHHHHhc--cCcEEEEEEc
Confidence 6778899999999999999 99999999 69998873 33344332 3455554443
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.26 E-value=6.4e-13 Score=138.01 Aligned_cols=141 Identities=14% Similarity=0.060 Sum_probs=88.6
Q ss_pred eEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCC-CCCceEEEEccCCCCCCCCCHHHHHHHhhh
Q 001400 157 IIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEF-VPPRTSAYVSQQDWQVAEMTVRETLDFAGQ 235 (1085)
Q Consensus 157 ~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~-~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~ 235 (1085)
.+++|++++|+||||||||||+++|+|. +. .|.|.++|.++... ...+.++|++|+.. +.+||.|++.+.+.
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~---~g~i~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~v~~~l~~~~~ 77 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PG---VPKVHFHSDDLWGYIKHGRIDPWLPQSHQ--QNRMIMQIAADVAG 77 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SS---SCEEEECTTHHHHTCCSSCCCTTSSSHHH--HHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cC---CCeEEEcccchhhhhhcccccCCccchhh--hhHHHHHHHHHHHH
Confidence 3679999999999999999999999997 22 79999999764322 12234578888654 45789999876532
Q ss_pred hcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCcccccCchhhhhHH
Q 001400 236 CQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRL 315 (1085)
Q Consensus 236 ~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqkqRv 315 (1085)
....+.. .. . ++.++..+++...... +..+..+|+|++||+
T Consensus 78 ~~~~~~~-~~-------------~----------------------~~~~~~~~~l~~~~~~---~~~~~~ls~~~~~~v 118 (191)
T 1zp6_A 78 RYAKEGY-FV-------------I----------------------LDGVVRPDWLPAFTAL---ARPLHYIVLRTTAAE 118 (191)
T ss_dssp HHHHTSC-EE-------------E----------------------ECSCCCTTTTHHHHTT---CSCEEEEEEECCHHH
T ss_pred HHhccCC-eE-------------E----------------------EeccCcHHHHHHHHhc---CCCeEEEEecCCHHH
Confidence 1100000 00 0 0000000111111100 111235999999999
Q ss_pred HHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHH
Q 001400 316 TTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKH 351 (1085)
Q Consensus 316 sia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~ 351 (1085)
.++|++..+|+++ +|+.....+.+.++.
T Consensus 119 ~~~R~~~r~~~~l--------ld~~~~~~~~~~~~~ 146 (191)
T 1zp6_A 119 AIERCLDRGGDSL--------SDPLVVADLHSQFAD 146 (191)
T ss_dssp HHHHHHTTCTTSC--------CCHHHHHHHHHHTTC
T ss_pred HHHHHHhcCCCcc--------CCHHHHHHHHHHHhc
Confidence 9999999999876 688777666665543
|
| >2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.26 E-value=5.8e-14 Score=142.97 Aligned_cols=112 Identities=21% Similarity=0.147 Sum_probs=71.7
Q ss_pred eEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCC------CC-ceEE----EEccCCCCCCCCCHHHHH
Q 001400 162 RLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV------PP-RTSA----YVSQQDWQVAEMTVRETL 230 (1085)
Q Consensus 162 ~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~------~~-~~~~----yv~Q~d~~~~~lTV~E~l 230 (1085)
++++|+|+||||||||++.|+|.+.+.....|.|.++|+++.+.. .+ +.++ +++|+..++ +++
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~----i~~-- 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF----IRR-- 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE----EEE--
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE----Eec--
Confidence 579999999999999999999998764233799999998854432 11 2355 788877654 000
Q ss_pred HHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCcccccCchh
Q 001400 231 DFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGG 310 (1085)
Q Consensus 231 ~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGG 310 (1085)
+ . .+. . ...+++++. .|+ ..||.+++ +||||
T Consensus 77 -------~--~-----~~~-----~------------------------a~l~~~i~~-~l~-g~dt~i~E----glSgG 107 (171)
T 2f1r_A 77 -------V--S-----EEE-----G------------------------NDLDWIYER-YLS-DYDLVITE----GFSKA 107 (171)
T ss_dssp -------C--C-----HHH-----H------------------------TCHHHHHHH-HTT-TCSEEEEE----SCGGG
T ss_pred -------C--C-----hhh-----h------------------------hCHHHHHHh-hCC-CCCEEEEC----CcCCC
Confidence 0 0 000 0 002333433 133 57899987 59999
Q ss_pred hhhHHHHHHHHhCCCcEe
Q 001400 311 QKKRLTTGELLVGPARVL 328 (1085)
Q Consensus 311 qkqRvsia~al~~~p~vl 328 (1085)
||||++|||+++++|++.
T Consensus 108 q~qri~lARall~~p~i~ 125 (171)
T 2f1r_A 108 GKDRIVVVKKPEEVEHFR 125 (171)
T ss_dssp CCCEEEECSSGGGGGGGC
T ss_pred CCcEEEEEecccCCCccC
Confidence 999999999999999863
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.25 E-value=4.3e-14 Score=146.91 Aligned_cols=154 Identities=12% Similarity=0.027 Sum_probs=92.7
Q ss_pred EEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCChh-cccceEEEEccCCCCCCCCCHHHHHHHhhhh
Q 001400 851 AFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE-TFARISGYCEQNDIHSPGLTVLESLLFSAWL 929 (1085)
Q Consensus 851 ~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~-~~~~~~gy~~Q~~~~~~~~tv~e~l~~~~~~ 929 (1085)
.+++|++++|+|+||||||||+++|+|.. ..|.|.++|.+.... ...+.++|++|... +..++.+++.+.+..
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~~----~~g~i~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~v~~~l~~~~~~ 78 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANLP----GVPKVHFHSDDLWGYIKHGRIDPWLPQSHQ--QNRMIMQIAADVAGR 78 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTCS----SSCEEEECTTHHHHTCCSSCCCTTSSSHHH--HHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhcc----CCCeEEEcccchhhhhhcccccCCccchhh--hhHHHHHHHHHHHHH
Confidence 36789999999999999999999999973 258899998653221 11233566666533 356788888664321
Q ss_pred cCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH
Q 001400 930 RLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMR 1009 (1085)
Q Consensus 930 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEPtsgLD~~~~~~i~~ 1009 (1085)
....... ..++.+++..++..+... .. .+..+|+|++|+++++|++.++|+++ +|+...+.+++
T Consensus 79 ~~~~~~~-----~~~~~~~~~~~l~~~~~~--~~-~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~ 142 (191)
T 1zp6_A 79 YAKEGYF-----VILDGVVRPDWLPAFTAL--AR-PLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHS 142 (191)
T ss_dssp HHHTSCE-----EEECSCCCTTTTHHHHTT--CS-CEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHH
T ss_pred HhccCCe-----EEEeccCcHHHHHHHHhc--CC-CeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHH
Confidence 1000000 000000000111111100 00 12359999999999999999999876 68888877777
Q ss_pred HHHHHHHCCceEEEEec
Q 001400 1010 TVRNIVNTGRTIVCTIH 1026 (1085)
Q Consensus 1010 ~l~~~~~~g~tvi~~~H 1026 (1085)
.++.+...+..+|.++|
T Consensus 143 ~~~~l~~~~~~~i~t~~ 159 (191)
T 1zp6_A 143 QFADLGAFEHHVLPVSG 159 (191)
T ss_dssp HTTCCGGGGGGEEECTT
T ss_pred HHhccCcccccEEECCC
Confidence 77665333334444443
|
| >2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis} | Back alignment and structure |
|---|
Probab=99.25 E-value=2.4e-12 Score=147.34 Aligned_cols=78 Identities=22% Similarity=0.194 Sum_probs=55.9
Q ss_pred ecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCC-CCceEEEEc-cCCCC--CCCCC
Q 001400 150 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV-PPRTSAYVS-QQDWQ--VAEMT 225 (1085)
Q Consensus 150 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~-~~~~~~yv~-Q~d~~--~~~lT 225 (1085)
+++++|+.+++|++++|+||||||||||+++|+|.+++. +|.|+++|..--... .++.++|++ |++.. ++..|
T Consensus 164 ~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~---~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~~~~~~~t 240 (361)
T 2gza_A 164 YMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFD---QRLITIEDVPELFLPDHPNHVHLFYPSEAKEEENAPVT 240 (361)
T ss_dssp HHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTT---SCEEEEESSSCCCCTTCSSEEEEECC----------CC
T ss_pred HHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCC---ceEEEECCccccCccccCCEEEEeecCccccccccccC
Confidence 459999999999999999999999999999999999876 899999985311111 345688888 65432 23444
Q ss_pred HHHHH
Q 001400 226 VRETL 230 (1085)
Q Consensus 226 V~E~l 230 (1085)
++++|
T Consensus 241 ~~~~i 245 (361)
T 2gza_A 241 AATLL 245 (361)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44444
|
| >2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis} | Back alignment and structure |
|---|
Probab=99.24 E-value=1.2e-12 Score=149.79 Aligned_cols=137 Identities=15% Similarity=0.123 Sum_probs=98.0
Q ss_pred EeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccC-ChhcccceEEEEc-cCCCCCCCCCHHH
Q 001400 844 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPK-RQETFARISGYCE-QNDIHSPGLTVLE 921 (1085)
Q Consensus 844 ~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~-~~~~~~~~~gy~~-Q~~~~~~~~tv~e 921 (1085)
+++++|+.+++|++++|+||||||||||+++|+|... +.+|.|.++|... .....++.++|++ |++..
T Consensus 164 ~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~--~~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~-------- 233 (361)
T 2gza_A 164 YMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIP--FDQRLITIEDVPELFLPDHPNHVHLFYPSEAKE-------- 233 (361)
T ss_dssp HHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSC--TTSCEEEEESSSCCCCTTCSSEEEEECC-------------
T ss_pred HHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCC--CCceEEEECCccccCccccCCEEEEeecCcccc--------
Confidence 3489999999999999999999999999999999876 3589999998532 1122456678887 54321
Q ss_pred HHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCH
Q 001400 922 SLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDA 1001 (1085)
Q Consensus 922 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEPtsgLD~ 1001 (1085)
+++.+..++-.|+.++..+|+.+++|||+.
T Consensus 234 ----------------------------------------------~~~~~~t~~~~i~~~l~~~pd~~l~~e~r~---- 263 (361)
T 2gza_A 234 ----------------------------------------------EENAPVTAATLLRSCLRMKPTRILLAELRG---- 263 (361)
T ss_dssp ---------------------------------------------------CCHHHHHHHHTTSCCSEEEESCCCS----
T ss_pred ----------------------------------------------ccccccCHHHHHHHHHhcCCCEEEEcCchH----
Confidence 011222355667777778899999999986
Q ss_pred HHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEecC
Q 001400 1002 RAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 1045 (1085)
Q Consensus 1002 ~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~g 1045 (1085)
..+.+.++.+.....|++.++|..+ ....+||+..+..+
T Consensus 264 ---~~~~~~l~~l~~g~~~~l~t~H~~~--~~~~~~Rl~~l~~~ 302 (361)
T 2gza_A 264 ---GEAYDFINVAASGHGGSITSCHAGS--CELTFERLALMVLQ 302 (361)
T ss_dssp ---THHHHHHHHHHTTCCSCEEEEECSS--HHHHHHHHHHHHTT
T ss_pred ---HHHHHHHHHHhcCCCeEEEEECCCC--HHHHHHHHHHHHhc
Confidence 2355667766433457899999965 55678998888765
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.24 E-value=8.3e-15 Score=152.24 Aligned_cols=168 Identities=15% Similarity=0.153 Sum_probs=104.7
Q ss_pred CeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCChhcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCc
Q 001400 855 GVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSE 934 (1085)
Q Consensus 855 Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gy~~Q~~~~~~~~tv~e~l~~~~~~~~~~~ 934 (1085)
|++++|+||||||||||+++|++. ..|.+.++|.+.... ...|+++|.....+..++++++.+.+....
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~~-----~~g~~~i~~d~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--- 70 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAAQ-----LDNSAYIEGDIINHM---VVGGYRPPWESDELLALTWKNITDLTVNFL--- 70 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH-----SSSEEEEEHHHHHTT---CCTTCCCGGGCHHHHHHHHHHHHHHHHHHH---
T ss_pred CeEEEEECCCCCcHHHHHHHHhcc-----cCCeEEEcccchhhh---hccccccCccchhHHHHHHHHHHHHHHHHH---
Confidence 689999999999999999999972 347888988643211 124566665433344577777765432110
Q ss_pred ccHHHHHHHHHHHHHHcCCCcccccccCC---CCCCCC--CHHHHHHHHHHH------HHhcCCCEEEEeCCCCCCCHHH
Q 001400 935 IELETQRAFVEEVMELVELTSLSGALIGL---PGINGL--STEQRKRLTIAV------ELVANPSIVFMDEPTSGLDARA 1003 (1085)
Q Consensus 935 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~---~~~~~L--S~Gqrqrl~iA~------aL~~~p~illlDEPtsgLD~~~ 1003 (1085)
. -+...+.+..... .....+ |+|++|++.++. +++.+|+...+|+ ++|+..
T Consensus 71 --------------~-~~~~~ild~~~~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~ 132 (189)
T 2bdt_A 71 --------------L-AQNDVVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERC 132 (189)
T ss_dssp --------------H-TTCEEEEESCCCHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGG
T ss_pred --------------h-cCCcEEEeeccCHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHH
Confidence 0 0000000000000 000123 777777877777 8888898888884 899988
Q ss_pred HHHHHHHHHHHHHCCceEEEEecC-ccHHHHHhcCEEEEEecCcEEEEecCCCC
Q 001400 1004 AAIVMRTVRNIVNTGRTIVCTIHQ-PSIDIFESFDELLFMKRGGELIYAGPLGS 1056 (1085)
Q Consensus 1004 ~~~i~~~l~~~~~~g~tvi~~~H~-~~~~~~~~~d~il~l~~gG~~~~~g~~~~ 1056 (1085)
... ++.++.+...+.+||.++|. ++ ++.+.+|+|+ +.|+++..|+...
T Consensus 133 ~~~-~~~~~~~~~~~~~ii~tsh~~~~-~~e~~~~~i~---~~g~~~~~~~~~~ 181 (189)
T 2bdt_A 133 LEL-VEEFESKGIDERYFYNTSHLQPT-NLNDIVKNLK---TNPRFIFCMAGDP 181 (189)
T ss_dssp GHH-HHHHHHTTCCTTSEEECSSSCGG-GHHHHHHHHH---HCGGGSCC-----
T ss_pred HHH-HHHHhhcCCCccEEEeCCCCChh-hHHHHHHHHh---hCCcEEEeecCCc
Confidence 888 88888775567899999998 76 5778899998 4688988887643
|
| >1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1 | Back alignment and structure |
|---|
Probab=99.24 E-value=3.5e-15 Score=168.16 Aligned_cols=155 Identities=16% Similarity=0.135 Sum_probs=96.1
Q ss_pred eEEEEEccCCCChhHHHhhhhCCCCC------CeeeeEEEEcCccCChh------------------cccceEEEE---c
Q 001400 856 VLTALVGVSGAGKTTLMDVLAGRKTG------GIIEGDIYISGYPKRQE------------------TFARISGYC---E 908 (1085)
Q Consensus 856 e~~al~G~nGaGKSTLl~~l~g~~~~------~~~~G~i~i~g~~~~~~------------------~~~~~~gy~---~ 908 (1085)
++++|+|+||||||||++.|.|...+ .+..|+|.|||.++... .+++.++++ +
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~~ 84 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNL 84 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhHH
Confidence 58999999999999999999986521 13578999998765321 233445555 4
Q ss_pred cCCCCCCCCCHHHHHHHhhhhcCCCcc---cHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhc
Q 001400 909 QNDIHSPGLTVLESLLFSAWLRLPSEI---ELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVA 985 (1085)
Q Consensus 909 Q~~~~~~~~tv~e~l~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~ 985 (1085)
|+....+..++.|+..++......... ........++.++..+++.+..+... ++|+||+||+..+++++.
T Consensus 85 q~~~~~~~~~v~E~~~l~~p~~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~~~------~ls~g~~Q~~~ad~ill~ 158 (318)
T 1nij_A 85 DKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMN------QFTIAQSQVGYADRILLT 158 (318)
T ss_dssp HHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHHH------HCHHHHHHHHTCSEEEEE
T ss_pred hcCCCCCCEEEEeCCCCCCHHHHHHHHhcCccccCeEEECCEEEEEEHHHHHHHHh------hchHHHHHHHhCCEEEEE
Confidence 655545566666665432100000000 00000000111222223333322221 589999999999899999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCc
Q 001400 986 NPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQP 1028 (1085)
Q Consensus 986 ~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~ 1028 (1085)
+|+++ ||| ..+.+.|+++. .+.||++++|++
T Consensus 159 k~dl~--de~---------~~l~~~l~~l~-~~~~ii~~sh~~ 189 (318)
T 1nij_A 159 KTDVA--GEA---------EKLHERLARIN-ARAPVYTVTHGD 189 (318)
T ss_dssp CTTTC--SCT---------HHHHHHHHHHC-SSSCEEECCSSC
T ss_pred CcccC--CHH---------HHHHHHHHHhC-CCCeEEEecccC
Confidence 99987 998 67888888864 689999999975
|
| >1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=99.20 E-value=2.8e-12 Score=142.02 Aligned_cols=135 Identities=16% Similarity=0.230 Sum_probs=84.6
Q ss_pred eCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCCCceEEEEccCCCCCCCCCHHHHHHHhhhhcC
Q 001400 159 RPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQG 238 (1085)
Q Consensus 159 ~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~ 238 (1085)
+++.+++|.||+|||||||.+.|++.+.+ .| .. .+.+.+|+|++.+++. ++++|+.++..-.+
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~----~g------~~------~~~~~iv~~D~f~~~~-~~~~~l~~~~~~~~ 91 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLME----KY------GG------EKSIGYASIDDFYLTH-EDQLKLNEQFKNNK 91 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHH----HH------GG------GSCEEEEEGGGGBCCH-HHHHHHHHHTTTCG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhh----cC------CC------CceEEEeccccccCCh-HHHHHHhccccccc
Confidence 46889999999999999999999999864 22 00 2345666999988764 89999987531000
Q ss_pred CCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcc----cccccccCcccccCchhhhhH
Q 001400 239 VGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDT----CADTLVGDEMLKGISGGQKKR 314 (1085)
Q Consensus 239 ~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~----~~dt~vg~~~~~~LSGGqkqR 314 (1085)
.-.. .+....-|.+ .....++.+.-.. .....+. .....+||||+||
T Consensus 92 l~~~-------------~g~p~a~d~~---------------~l~~~l~~l~~g~~t~~~~~v~~p-~y~~~~sgGq~~R 142 (290)
T 1odf_A 92 LLQG-------------RGLPGTHDMK---------------LLQEVLNTIFNNNEHPDQDTVVLP-KYDKSQFKGEGDR 142 (290)
T ss_dssp GGSS-------------SCSTTSBCHH---------------HHHHHHHHHTC------CCEEEEC-CEETTHHHHTCEE
T ss_pred hhhh-------------ccCcchhHHH---------------HHHHHHHHhhccCccccCcceeec-cCccccCCccccc
Confidence 0000 0000001111 1233444443220 0111122 2335799999999
Q ss_pred HHHH--HHHhCCCcEeEEeCCCCCCCHHH
Q 001400 315 LTTG--ELLVGPARVLFMDEISNGLDSST 341 (1085)
Q Consensus 315 vsia--~al~~~p~vlllDEptsgLD~~~ 341 (1085)
+++| +++ +|+|+|+|||++++|+..
T Consensus 143 ~~~a~~~~~--~~~IlIlEG~~~~ld~~~ 169 (290)
T 1odf_A 143 CPTGQKIKL--PVDIFILEGWFLGFNPIL 169 (290)
T ss_dssp CSSCEEEES--SCSEEEEEESSTTCCCCC
T ss_pred cccccceEc--CCCEEEEeCccccCCccc
Confidence 9997 555 999999999999999853
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=99.19 E-value=5e-14 Score=162.08 Aligned_cols=165 Identities=8% Similarity=0.023 Sum_probs=94.0
Q ss_pred eeeeEEEeC--CeEEEEEccCCCChhHHHhhhhCCCCCCeee----eEEEEcCccCChhcccceEEEEccCCCCCCCCCH
Q 001400 846 VNVTGAFRP--GVLTALVGVSGAGKTTLMDVLAGRKTGGIIE----GDIYISGYPKRQETFARISGYCEQNDIHSPGLTV 919 (1085)
Q Consensus 846 ~~vs~~i~~--Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~----G~i~i~g~~~~~~~~~~~~gy~~Q~~~~~~~~tv 919 (1085)
+.|++.|++ |++++|+|+||||||||+++|+|... +.. |.|++++... ..+........
T Consensus 159 ~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~--~~~~~e~G~i~i~~~~~-------------~~~~~~~~~~~ 223 (365)
T 1lw7_A 159 KFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFN--TTSAWEYGREFVFEKLG-------------GDEQAMQYSDY 223 (365)
T ss_dssp GGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTT--CEEECCTTHHHHHHSSS-------------SCTTSSCTTTH
T ss_pred hhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhC--CCcchhhHHHHHHhhcC-------------CCcccCChhHH
Confidence 368888999 99999999999999999999999765 345 6655532100 00000111112
Q ss_pred HHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCC--CcccccccCCCCCCCCCHHHHHHHHHHHHHh-cCCCEEEEeC--
Q 001400 920 LESLLFSAWLRLPSEIELETQRAFVEEVMELVEL--TSLSGALIGLPGINGLSTEQRKRLTIAVELV-ANPSIVFMDE-- 994 (1085)
Q Consensus 920 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l--~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~-~~p~illlDE-- 994 (1085)
+++.+... . .......+.+.+.+ .+..+.. ...+|+|++|+..+++++. .+|+++||||
T Consensus 224 -~~I~~~~q---------~-~~~~~~t~~~nl~~~~~~~~~~~-----~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~ 287 (365)
T 1lw7_A 224 -PQMALGHQ---------R-YIDYAVRHSHKIAFIDTDFITTQ-----AFCIQYEGKAHPFLDSMIKEYPFDVTILLKNN 287 (365)
T ss_dssp -HHHHHHHH---------H-HHHHHHHHCSSEEEESSCHHHHH-----HHHHHHHSCCCHHHHHHHHHSCCSEEEEEECC
T ss_pred -HHHHHHHH---------H-HHHHHHhccCCEEEEeCCchHHH-----HHHHHHcCCCCHHHHHHHhhcCCCEEEECCCC
Confidence 33332210 0 00000000000000 0000000 0135667777888888774 5999999999
Q ss_pred -CC------CCCCHHHHHHHHHHHHHHHH-CCceEEEEecCccHHHHHhcCEEEEEe
Q 001400 995 -PT------SGLDARAAAIVMRTVRNIVN-TGRTIVCTIHQPSIDIFESFDELLFMK 1043 (1085)
Q Consensus 995 -Pt------sgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~il~l~ 1043 (1085)
|+ +++|+..+..+.+.++++.+ .|.+||+++|. + .....++++.+++
T Consensus 288 ~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~-~-~~~r~~~~i~~i~ 342 (365)
T 1lw7_A 288 TEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESP-S-YLDRYNQVKAVIE 342 (365)
T ss_dssp CC-----------CCSHHHHHHHHHHHHHGGGCCCEEEECS-S-HHHHHHHHHHHHH
T ss_pred CCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCC-C-HHHHHHHHHHHHH
Confidence 65 68999999999999988754 48999999985 2 2344455555443
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.19 E-value=2.9e-12 Score=147.60 Aligned_cols=158 Identities=15% Similarity=0.122 Sum_probs=97.9
Q ss_pred cccceeeEeCCeE--EEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCC---CCCceEEEEccCCCCCCCCC
Q 001400 151 LDDLSGIIRPSRL--TLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEF---VPPRTSAYVSQQDWQVAEMT 225 (1085)
Q Consensus 151 L~~vs~~i~~G~~--~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~---~~~~~~~yv~Q~d~~~~~lT 225 (1085)
|+++|+.+++|++ ++|+||||||||||+++|+|.. ..| .++... ...+.++|++|++.+++.+|
T Consensus 30 L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~-----l~g------~~~~~~~~~~~~~~i~~v~Q~~~l~~~lt 98 (427)
T 2qag_B 30 DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK-----FEG------EPATHTQPGVQLQSNTYDLQESNVRLKLT 98 (427)
T ss_dssp HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC-----C-------------CCSSCEEEEEEEEEEC--CEEEEE
T ss_pred cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc-----ccC------CcCCCCCccceEeeEEEEeecCccccccc
Confidence 9999999999999 9999999999999999999973 122 222111 11346899999988888999
Q ss_pred HHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHh-CCcc----ccccc--
Q 001400 226 VRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKIL-GLDT----CADTL-- 298 (1085)
Q Consensus 226 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~l-gL~~----~~dt~-- 298 (1085)
|.||+.|+.... . ..+.. .+..++ ....+..|... ++.. ..|+.
T Consensus 99 v~D~~~~g~~~~----~-----~~~~~----------~i~~~i----------~~q~~~~L~e~~~i~r~l~~~~d~rVh 149 (427)
T 2qag_B 99 IVSTVGFGDQIN----K-----EDSYK----------PIVEFI----------DAQFEAYLQEELKIRRVLHTYHDSRIH 149 (427)
T ss_dssp EEEEECCCC-CC----H-----HHHSH----------HHHHHH----------HHHHHHHHHHC--CCCCCCCSCC--CC
T ss_pred hhhhhhhhhccc----c-----chhhh----------HHHHHH----------HHHHHHHHHHHHhhhhhhccccccccc
Confidence 999997753211 0 00000 000011 11233344433 4431 12222
Q ss_pred --cc--CcccccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHH
Q 001400 299 --VG--DEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKH 351 (1085)
Q Consensus 299 --vg--~~~~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~ 351 (1085)
+. .+...+|+-.+ +.|+++|..+++|+++|||+..|.......+.+.+++
T Consensus 150 ~~v~fI~d~~~~l~~~D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~ 203 (427)
T 2qag_B 150 VCLYFIAPTGHSLKSLD---LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITS 203 (427)
T ss_dssp EEEEEECCCC---CHHH---HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHH
T ss_pred EEEEEEeCCCCCCCHHH---HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHH
Confidence 11 01113566655 7899999999999999999999999988888888886
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.19 E-value=1.3e-11 Score=133.20 Aligned_cols=152 Identities=18% Similarity=0.234 Sum_probs=84.0
Q ss_pred EEEeCCeEEEEEccCCCChhHHHhhhhCC--CCC---CeeeeEEEEcCccCChhcccceEEEEccCCCCCCCCCHHHHHH
Q 001400 850 GAFRPGVLTALVGVSGAGKTTLMDVLAGR--KTG---GIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLESLL 924 (1085)
Q Consensus 850 ~~i~~Ge~~al~G~nGaGKSTLl~~l~g~--~~~---~~~~G~i~i~g~~~~~~~~~~~~gy~~Q~~~~~~~~tv~e~l~ 924 (1085)
+-+++|++++|+||||||||||++.|++. ... +...|.+++++.... ...+-..
T Consensus 19 ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~---------------------~~~~~~~ 77 (243)
T 1n0w_A 19 GGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTF---------------------RPERLLA 77 (243)
T ss_dssp TSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCC---------------------CHHHHHH
T ss_pred CCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCc---------------------CHHHHHH
Confidence 35789999999999999999999999982 321 113567777765310 0000000
Q ss_pred HhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHH-HHHHHHHHh--cCCCEEEEeCCCCCCCH
Q 001400 925 FSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRK-RLTIAVELV--ANPSIVFMDEPTSGLDA 1001 (1085)
Q Consensus 925 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrq-rl~iA~aL~--~~p~illlDEPtsgLD~ 1001 (1085)
....+. ... +++++.+.+ . ...+..+.. .+.-+.+++ .+|+++++|||++.+|+
T Consensus 78 ~~~~~g----~~~-------~~~~~~~~~-------~-----~~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~ 134 (243)
T 1n0w_A 78 VAERYG----LSG-------SDVLDNVAY-------A-----RAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRT 134 (243)
T ss_dssp HHHHTT----CCH-------HHHHHTEEE-------E-----ECCSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-
T ss_pred HHHHcC----CCH-------HHHhhCeEE-------E-----ecCCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHH
Confidence 000000 000 112221100 0 124444433 233333443 58999999999999998
Q ss_pred H-------H-----HHHHHHHHHHHHH-CCceEEEEecCccHH------------------HHHhcCEEEEEecC
Q 001400 1002 R-------A-----AAIVMRTVRNIVN-TGRTIVCTIHQPSID------------------IFESFDELLFMKRG 1045 (1085)
Q Consensus 1002 ~-------~-----~~~i~~~l~~~~~-~g~tvi~~~H~~~~~------------------~~~~~d~il~l~~g 1045 (1085)
. + ...+++.|+++++ .|.|||+++|..... +...+|.+++|.++
T Consensus 135 ~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~ 209 (243)
T 1n0w_A 135 DYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKG 209 (243)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC-------------------------CCTTCEEEEEEEC
T ss_pred HhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEEEc
Confidence 5 3 3445566666654 499999999964311 11168999999864
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.18 E-value=3.9e-13 Score=141.65 Aligned_cols=69 Identities=10% Similarity=-0.070 Sum_probs=54.3
Q ss_pred HHHHHHHhCCcccccccccCcccccCchhhhhH-HHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 001400 282 VEYIMKILGLDTCADTLVGDEMLKGISGGQKKR-LTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTR 354 (1085)
Q Consensus 282 ~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqkqR-vsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~ 354 (1085)
+...++..+++.. .+++ ....+|+||||| +..+++++.+|+.+++|||||++|.....++++.|.+...
T Consensus 129 ~~~~~~~~~~~~~---~v~n-K~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~ 198 (210)
T 1pui_A 129 MIEWAVDSNIAVL---VLLT-KADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFS 198 (210)
T ss_dssp HHHHHHHTTCCEE---EEEE-CGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCCeE---EEEe-cccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHh
Confidence 3444556666542 2232 234699999999 8999999999999999999999999999999999988764
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=99.17 E-value=1.2e-12 Score=147.90 Aligned_cols=122 Identities=17% Similarity=0.101 Sum_probs=80.3
Q ss_pred ecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhC-CCCceeeEEEEC-CccCCCCCCCceEEEEccCCCCCCCCCHH
Q 001400 150 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLG-HHLQVSGKITYN-GHGFKEFVPPRTSAYVSQQDWQVAEMTVR 227 (1085)
Q Consensus 150 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~-~~~~~~G~i~~~-G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 227 (1085)
-+++++.. .+|++++|+||||||||||+|+|+|... +. +|+|.++ |.+... ...+.++|++|+..++++.||+
T Consensus 205 gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~---~G~I~~~~G~g~~t-t~~~~i~~v~q~~~l~dtpgv~ 279 (358)
T 2rcn_A 205 GLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEIL---TNDVSNVSGLGQHT-TTAARLYHFPHGGDVIDSPGVR 279 (358)
T ss_dssp THHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCC---CC--------------CCCEEEECTTSCEEEECHHHH
T ss_pred CHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccc---cCCccccCCCCccc-eEEEEEEEECCCCEecCcccHH
Confidence 35666664 4799999999999999999999999887 65 8999987 755432 2346789999999889999998
Q ss_pred HHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCcccccC
Q 001400 228 ETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGI 307 (1085)
Q Consensus 228 E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 307 (1085)
|+ .. .+.. ..+ ....++++++.+|+.+..|... .++
T Consensus 280 e~---~l--~~l~----------~~e------------------------~~~~~~e~l~~~gl~~f~~~~~-----~~l 315 (358)
T 2rcn_A 280 EF---GL--WHLE----------PEQ------------------------ITQGFVEFHDYLGHCKYRDCKH-----DAD 315 (358)
T ss_dssp TC---CC--CCCC----------HHH------------------------HHHTSGGGGGGTTCSSSTTCCS-----SSC
T ss_pred Hh---hh--cCCC----------HHH------------------------HHHHHHHHHHHcCCchhcCCCc-----ccC
Confidence 83 11 1100 000 0112445667788877666544 469
Q ss_pred chhhhhHHHHHHHH
Q 001400 308 SGGQKKRLTTGELL 321 (1085)
Q Consensus 308 SGGqkqRvsia~al 321 (1085)
| ||+||++||+++
T Consensus 316 S-G~~~r~ala~gl 328 (358)
T 2rcn_A 316 P-GCAIREAVENGA 328 (358)
T ss_dssp T-TCHHHHHHHHTS
T ss_pred C-HHHHHHHHHhcC
Confidence 9 999999999864
|
| >2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A | Back alignment and structure |
|---|
Probab=99.17 E-value=2.7e-13 Score=147.15 Aligned_cols=156 Identities=19% Similarity=0.191 Sum_probs=94.0
Q ss_pred CCeEEEEeCCCCCChhHHHHHHH---hhhCCCCceeeEEEECCccCCCCCCCceEEEEccCCCCCCCCCHHHHHHHhhhh
Q 001400 160 PSRLTLLLGPPSSGKTTLLLALA---GRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQC 236 (1085)
Q Consensus 160 ~G~~~~llGp~GsGKSTLL~~L~---G~l~~~~~~~G~i~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~ 236 (1085)
++++++|+||||||||||+++|+ |...+ .+|+|.++|.+... ...+.+.+++|+...++..|+.+++......
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~---~~G~i~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~ 101 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHL---SSGHFLRENIKAST-EVGEMAKQYIEKSLLVPDHVITRLMMSELEN 101 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCE---EHHHHHHHHHHTTC-HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEe---cHHHHHHHHHhcCC-hHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 46899999999999999999999 76544 37888887754211 0112345566777778888999999764321
Q ss_pred --------cCCCCchhhhHHHHHHHHHhC-CCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCcccccC
Q 001400 237 --------QGVGSKYDMITELARREKIAG-IKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGI 307 (1085)
Q Consensus 237 --------~~~~~~~~~~~~~~~~e~~~~-~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 307 (1085)
.+..... . ..+.... ..++ .-.+ + +.-.+.++ .... ++.+..|
T Consensus 102 ~~~~~~il~g~~~~~---~---~~~~l~~~~~~~--~vi~-----L-----~~~~~~~l-----~r~~-----~r~~~~l 153 (246)
T 2bbw_A 102 RRGQHWLLDGFPRTL---G---QAEALDKICEVD--LVIS-----L-----NIPFETLK-----DRLS-----RRWIHPP 153 (246)
T ss_dssp CTTSCEEEESCCCSH---H---HHHHHHTTCCCC--EEEE-----E-----ECCHHHHH-----HHHH-----TEEEETT
T ss_pred cCCCeEEEECCCCCH---H---HHHHHHhhcCCC--EEEE-----E-----ECCHHHHH-----HHHH-----cCCCcCC
Confidence 1110000 0 0000000 0000 0000 0 00000001 1111 2234469
Q ss_pred chhhhhHHHHHHHH-hCCCcEeEEe----CCCCCCCHHHHHHHHHHHHHHHh
Q 001400 308 SGGQKKRLTTGELL-VGPARVLFMD----EISNGLDSSTTYQIIKYLKHSTR 354 (1085)
Q Consensus 308 SGGqkqRvsia~al-~~~p~vlllD----EptsgLD~~~~~~i~~~l~~~~~ 354 (1085)
|| |+ +++ +.+|++++|| |||++||..+...+.+.++.+.+
T Consensus 154 Sg----rv---~al~~~~P~~lllD~~~~EP~~~ld~~~~~~i~~~l~~~~~ 198 (246)
T 2bbw_A 154 SG----RV---YNLDFNPPHVHGIDDVTGEPLVQQEDDKPEAVAARLRQYKD 198 (246)
T ss_dssp TT----EE---EETTTSCCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHHH
T ss_pred CC----Cc---cccccCCCcccccccccccccccCCCCcHHHHHHHHHHHHH
Confidence 99 66 677 9999999999 99999999999999999987754
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* | Back alignment and structure |
|---|
Probab=99.17 E-value=3.4e-11 Score=138.62 Aligned_cols=77 Identities=23% Similarity=0.359 Sum_probs=67.2
Q ss_pred CCCCHHHHHHH------HHHHHHhcC-CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEE
Q 001400 967 NGLSTEQRKRL------TIAVELVAN-PSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDEL 1039 (1085)
Q Consensus 967 ~~LS~Gqrqrl------~iA~aL~~~-p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i 1039 (1085)
..||||||||+ ++|++|+.+ |++|||||||+|||+..+..+.+.|+++. .+.+||+|||++. +...+|++
T Consensus 279 ~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~~~~vi~~th~~~--~~~~~d~~ 355 (371)
T 3auy_A 279 DNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVK-SIPQMIIITHHRE--LEDVADVI 355 (371)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCC-SCSEEEEEESCGG--GGGGCSEE
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhc-cCCeEEEEEChHH--HHhhCCEE
Confidence 36999999988 567899999 99999999999999999999999999863 4579999999975 46789999
Q ss_pred EEEecCc
Q 001400 1040 LFMKRGG 1046 (1085)
Q Consensus 1040 l~l~~gG 1046 (1085)
++|.+.|
T Consensus 356 ~~l~k~~ 362 (371)
T 3auy_A 356 INVKKDG 362 (371)
T ss_dssp EEEEESS
T ss_pred EEEEecC
Confidence 9997544
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=1e-11 Score=142.50 Aligned_cols=132 Identities=22% Similarity=0.264 Sum_probs=92.8
Q ss_pred eecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCCCceEEEEccCCCCCCCCCHHH
Q 001400 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRE 228 (1085)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E 228 (1085)
.+|++++ +++|++++|+|||||||||||++|+|.+++. .+|+|.+.|.++. ...+..++||+|...
T Consensus 126 ~~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~--~~g~I~~~e~~~e-~~~~~~~~~v~Q~~~--------- 191 (372)
T 2ewv_A 126 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQT--KSYHIITIEDPIE-YVFKHKKSIVNQREV--------- 191 (372)
T ss_dssp SSHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHH--SCCEEEEEESSCC-SCCCCSSSEEEEEEB---------
T ss_pred HHHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcC--CCcEEEEecccHh-hhhccCceEEEeeec---------
Confidence 3678876 8999999999999999999999999998652 1699987776553 233455677777420
Q ss_pred HHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCcccccCc
Q 001400 229 TLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGIS 308 (1085)
Q Consensus 229 ~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LS 308 (1085)
|++ . ..+
T Consensus 192 -------------------------------------------------------------g~~----~-------~~~- 198 (372)
T 2ewv_A 192 -------------------------------------------------------------GED----T-------KSF- 198 (372)
T ss_dssp -------------------------------------------------------------TTT----B-------SCS-
T ss_pred -------------------------------------------------------------CCC----H-------HHH-
Confidence 000 0 123
Q ss_pred hhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEec
Q 001400 309 GGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLS 382 (1085)
Q Consensus 309 GGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~ 382 (1085)
+.+|+++|..+|+++++|||+ |..+... .++. +. .+.+ +++++|.. ++.+.+|+++.|.
T Consensus 199 -----~~~l~~~L~~~pd~illdE~~---d~e~~~~---~l~~-~~-~g~~-vi~t~H~~-~~~~~~~rl~~l~ 257 (372)
T 2ewv_A 199 -----ADALRAALREDPDVIFVGEMR---DLETVET---ALRA-AE-TGHL-VFGTLHTN-TAIDTIHRIVDIF 257 (372)
T ss_dssp -----HHHHHHHTTSCCSEEEESCCC---SHHHHHH---HHHH-HT-TTCE-EEECCCCC-SHHHHHHHHHHTS
T ss_pred -----HHHHHHHhhhCcCEEEECCCC---CHHHHHH---HHHH-Hh-cCCE-EEEEECcc-hHHHHHHHHHHhc
Confidence 468999999999999999999 7766443 3443 22 3444 55566664 4778888887764
|
| >2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A | Back alignment and structure |
|---|
Probab=99.16 E-value=7.1e-14 Score=151.71 Aligned_cols=144 Identities=17% Similarity=0.251 Sum_probs=95.7
Q ss_pred CCeEEEEEccCCCChhHHHhhhh---CCCCCCeeeeEEEEcCccCChhcccceEEEEccCCCCCCCCCHHHHHHHhhh--
Q 001400 854 PGVLTALVGVSGAGKTTLMDVLA---GRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLESLLFSAW-- 928 (1085)
Q Consensus 854 ~Ge~~al~G~nGaGKSTLl~~l~---g~~~~~~~~G~i~i~g~~~~~~~~~~~~gy~~Q~~~~~~~~tv~e~l~~~~~-- 928 (1085)
++++++|+|+||||||||+++|+ |... +..|+|.++|.+... ...+.+++++|+..+.+..++.+++.....
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~--~~~G~i~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~~ 102 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQH--LSSGHFLRENIKAST-EVGEMAKQYIEKSLLVPDHVITRLMMSELENR 102 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCC--EEHHHHHHHHHHTTC-HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeE--ecHHHHHHHHHhcCC-hHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Confidence 47899999999999999999999 8765 567888777654321 122334556777777788899999875321
Q ss_pred ------hc-CCCcccHHHHHHHHHHHHHHcCC--------------CcccccccCCCCCCCCCHHHHHHHHHHHHH-hcC
Q 001400 929 ------LR-LPSEIELETQRAFVEEVMELVEL--------------TSLSGALIGLPGINGLSTEQRKRLTIAVEL-VAN 986 (1085)
Q Consensus 929 ------~~-~~~~~~~~~~~~~~~~~l~~~~l--------------~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL-~~~ 986 (1085)
+. .+.. . ..++.+.+.... ..+.+.. +..||| |+ ++| +.+
T Consensus 103 ~~~~~il~g~~~~---~---~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~-----~~~lSg----rv---~al~~~~ 164 (246)
T 2bbw_A 103 RGQHWLLDGFPRT---L---GQAEALDKICEVDLVISLNIPFETLKDRLSRRW-----IHPPSG----RV---YNLDFNP 164 (246)
T ss_dssp TTSCEEEESCCCS---H---HHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEE-----EETTTT----EE---EETTTSC
T ss_pred CCCeEEEECCCCC---H---HHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCC-----CcCCCC----Cc---cccccCC
Confidence 11 1111 1 111222111111 1111111 235888 55 677 999
Q ss_pred CCEEEEe----CCCCCCCHHHHHHHHHHHHHHHHCC
Q 001400 987 PSIVFMD----EPTSGLDARAAAIVMRTVRNIVNTG 1018 (1085)
Q Consensus 987 p~illlD----EPtsgLD~~~~~~i~~~l~~~~~~g 1018 (1085)
|++++|| |||++||..+...+.+.++++.+.+
T Consensus 165 P~~lllD~~~~EP~~~ld~~~~~~i~~~l~~~~~~~ 200 (246)
T 2bbw_A 165 PHVHGIDDVTGEPLVQQEDDKPEAVAARLRQYKDVA 200 (246)
T ss_dssp CSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHHHHH
T ss_pred CcccccccccccccccCCCCcHHHHHHHHHHHHHhH
Confidence 9999999 9999999999999999999886543
|
| >1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A | Back alignment and structure |
|---|
Probab=99.15 E-value=5.1e-13 Score=134.21 Aligned_cols=81 Identities=22% Similarity=0.118 Sum_probs=66.0
Q ss_pred cCCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCChhcccceEEEEccCCCCCCCCC
Q 001400 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLT 918 (1085)
Q Consensus 839 ~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gy~~Q~~~~~~~~t 918 (1085)
+++..++++|||++++|++++|+||||||||||+++|+|.. + .+|+|.++|+++......+ .|++|+..++ .+|
T Consensus 17 ~g~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~--~~G~V~~~g~~i~~~~~~~--~~~~q~~~l~-~lt 90 (158)
T 1htw_A 17 FGKKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-G--HQGNVKSPTYTLVEEYNIA--GKMIYHFDLY-RLA 90 (158)
T ss_dssp HHHHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-T--CCSCCCCCTTTCEEEEEET--TEEEEEEECT-TCS
T ss_pred HHHHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-C--CCCeEEECCEeeeeeccCC--Ccceeccccc-cCC
Confidence 34456889999999999999999999999999999999976 3 4799999998764221111 2789988888 899
Q ss_pred HHHHHHH
Q 001400 919 VLESLLF 925 (1085)
Q Consensus 919 v~e~l~~ 925 (1085)
+.|++.+
T Consensus 91 v~e~l~~ 97 (158)
T 1htw_A 91 DPEELEF 97 (158)
T ss_dssp CTTHHHH
T ss_pred cHHHHHH
Confidence 9999965
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=99.15 E-value=4.4e-12 Score=147.74 Aligned_cols=152 Identities=13% Similarity=0.129 Sum_probs=100.4
Q ss_pred eeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCCh-------hc--ccceEEEEccCCCCCCC
Q 001400 846 VNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ-------ET--FARISGYCEQNDIHSPG 916 (1085)
Q Consensus 846 ~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~-------~~--~~~~~gy~~Q~~~~~~~ 916 (1085)
+++||++++|++++|+|+||||||||+++|+|... +..|+|.++|.+... .. .++.++|++|+....+.
T Consensus 284 ~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~--~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~ 361 (503)
T 2yhs_A 284 EPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFE--QQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSA 361 (503)
T ss_dssp CCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHH--HTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHH
T ss_pred CCceeeccCCeEEEEECCCcccHHHHHHHHHHHhh--hcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHH
Confidence 37889999999999999999999999999999754 346899998766432 11 24568999999888888
Q ss_pred CCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHh-cCCC-EEEEeC
Q 001400 917 LTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELV-ANPS-IVFMDE 994 (1085)
Q Consensus 917 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~-~~p~-illlDE 994 (1085)
.++++++.+..... .+. -+++..|+.+.. ..+-..-+|++.+++++. ..|. +||...
T Consensus 362 ~tV~e~l~~a~~~~--~Dv----------VLIDTaGrl~~~---------~~lm~EL~kiv~iar~l~~~~P~evLLvLD 420 (503)
T 2yhs_A 362 SVIFDAIQAAKARN--IDV----------LIADTAGRLQNK---------SHLMEELKKIVRVMKKLDVEAPHEVMLTID 420 (503)
T ss_dssp HHHHHHHHHHHHTT--CSE----------EEECCCCSCCCH---------HHHHHHHHHHHHHHHTTCTTCSSEEEEEEE
T ss_pred HHHHHHHHHHHhcC--CCE----------EEEeCCCccchh---------hhHHHHHHHHHHHHHHhccCCCCeeEEEec
Confidence 89999998753211 000 001111111100 012223457788888663 4574 555555
Q ss_pred CCCCCCHHHHHHHHHHHHHHHH-CCceEEEEec
Q 001400 995 PTSGLDARAAAIVMRTVRNIVN-TGRTIVCTIH 1026 (1085)
Q Consensus 995 PtsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H 1026 (1085)
||+|.|.. +.++.+.+ -|.|.|++||
T Consensus 421 attGq~al------~~ak~f~~~~~itgvIlTK 447 (503)
T 2yhs_A 421 ASTGQNAV------SQAKLFHEAVGLTGITLTK 447 (503)
T ss_dssp GGGTHHHH------HHHHHHHHHTCCSEEEEEC
T ss_pred CcccHHHH------HHHHHHHhhcCCCEEEEEc
Confidence 88886654 33444433 4899999999
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.13 E-value=2.3e-11 Score=131.12 Aligned_cols=29 Identities=31% Similarity=0.379 Sum_probs=27.5
Q ss_pred eeEeCCeEEEEeCCCCCChhHHHHHHHhh
Q 001400 156 GIIRPSRLTLLLGPPSSGKTTLLLALAGR 184 (1085)
Q Consensus 156 ~~i~~G~~~~llGp~GsGKSTLL~~L~G~ 184 (1085)
+-+++|++++|+||||||||||++.|++.
T Consensus 19 ggi~~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 19 GGIETGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp TSEETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 57999999999999999999999999994
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=99.13 E-value=1.1e-11 Score=140.02 Aligned_cols=120 Identities=18% Similarity=0.125 Sum_probs=81.7
Q ss_pred eeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEc-CccCChhcccceEEEEccCCCCCCCCCHHHHHHH
Q 001400 847 NVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYIS-GYPKRQETFARISGYCEQNDIHSPGLTVLESLLF 925 (1085)
Q Consensus 847 ~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~-g~~~~~~~~~~~~gy~~Q~~~~~~~~tv~e~l~~ 925 (1085)
++++. .+|++++|+|+||||||||+++|+|.... +..|+|.++ |.+.. .+..+.++|++|+..+++..+++|+
T Consensus 208 ~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~-~~~G~I~~~~G~g~~-tt~~~~i~~v~q~~~l~dtpgv~e~--- 281 (358)
T 2rcn_A 208 PLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNE-ILTNDVSNVSGLGQH-TTTAARLYHFPHGGDVIDSPGVREF--- 281 (358)
T ss_dssp HHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSC-CCCC--------------CCCEEEECTTSCEEEECHHHHTC---
T ss_pred HHHHh-cCCCEEEEECCCCccHHHHHHHHhccccc-cccCCccccCCCCcc-ceEEEEEEEECCCCEecCcccHHHh---
Confidence 34433 37999999999999999999999996541 357999887 65542 2345678999999888888888884
Q ss_pred hhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHH
Q 001400 926 SAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVEL 983 (1085)
Q Consensus 926 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL 983 (1085)
.. . .....+....+.++++.+++..+.+... .+|| ||+||++||+++
T Consensus 282 ~l--~---~l~~~e~~~~~~e~l~~~gl~~f~~~~~-----~~lS-G~~~r~ala~gl 328 (358)
T 2rcn_A 282 GL--W---HLEPEQITQGFVEFHDYLGHCKYRDCKH-----DADP-GCAIREAVENGA 328 (358)
T ss_dssp CC--C---CCCHHHHHHTSGGGGGGTTCSSSTTCCS-----SSCT-TCHHHHHHHHTS
T ss_pred hh--c---CCCHHHHHHHHHHHHHHcCCchhcCCCc-----ccCC-HHHHHHHHHhcC
Confidence 11 1 2233444556778888888887777654 4799 999999999875
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=1.1e-13 Score=156.99 Aligned_cols=166 Identities=14% Similarity=0.157 Sum_probs=105.7
Q ss_pred CeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCChh-------cccceEEEEccCCCC
Q 001400 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE-------TFARISGYCEQNDIH 913 (1085)
Q Consensus 841 ~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~-------~~~~~~gy~~Q~~~~ 913 (1085)
...+|+++|+++++|++++|+|+||||||||+++|+|... +..|+|.+.|.+.... ..++.++|++|++..
T Consensus 41 ~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~--~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~ 118 (337)
T 2qm8_A 41 VRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLT--AAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNA 118 (337)
T ss_dssp HHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHH--HTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTE
T ss_pred hHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhh--hCCCEEEEEEEcCcccccccchHHHhhhheeeccCccc
Confidence 3457889999999999999999999999999999999654 3468899988765321 235568999998877
Q ss_pred CCCC------------CHHHHHHHh-----------------------------hhhcCCCcccHHHHHHHHHHHHHHcC
Q 001400 914 SPGL------------TVLESLLFS-----------------------------AWLRLPSEIELETQRAFVEEVMELVE 952 (1085)
Q Consensus 914 ~~~~------------tv~e~l~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~l~~~~ 952 (1085)
++.. +++|.+... ..+..+.. ..........+++...
T Consensus 119 ~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~~--~~~~~~i~~~i~~~~~ 196 (337)
T 2qm8_A 119 FIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPGA--GDELQGIKKGIFELAD 196 (337)
T ss_dssp EEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSCC--------CCTTHHHHCS
T ss_pred ccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCCC--cccHHHHHHHHhcccc
Confidence 6431 233332110 00000000 0000000001122222
Q ss_pred CCcccccccCCCCCCCCCHHHHHHHHHHHHHhc------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 001400 953 LTSLSGALIGLPGINGLSTEQRKRLTIAVELVA------NPSIVFMDEPTSGLDARAAAIVMRTVRNIVN 1016 (1085)
Q Consensus 953 l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~------~p~illlDEPtsgLD~~~~~~i~~~l~~~~~ 1016 (1085)
+.-+ ++.... ....+|+|++|++..|++++. +|++++ ||++|......+++.|.++..
T Consensus 197 ivvl-NK~Dl~-~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 197 MIAV-NKADDG-DGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp EEEE-ECCSTT-CCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHHHH
T ss_pred EEEE-Echhcc-CchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHHHH
Confidence 2111 221100 113479999999999999987 688887 999999999999999988753
|
| >1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.11 E-value=9.1e-11 Score=137.89 Aligned_cols=76 Identities=18% Similarity=0.230 Sum_probs=68.5
Q ss_pred CCCCHHHHHHHHHHHHHh----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEE
Q 001400 967 NGLSTEQRKRLTIAVELV----ANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFM 1042 (1085)
Q Consensus 967 ~~LS~Gqrqrl~iA~aL~----~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l 1042 (1085)
..||||||||++||++|+ .+|+++||||||++||+..+..+.+.|+++.+.+.++|+|||++ ...+.||+++.+
T Consensus 332 ~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~--~~~~~~d~~~~~ 409 (430)
T 1w1w_A 332 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKN--TMFEKSDALVGV 409 (430)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCH--HHHTTCSEEEEE
T ss_pred ccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCH--HHHHhCCEEEEE
Confidence 469999999999999999 58999999999999999999999999999865578999999995 467789999998
Q ss_pred ec
Q 001400 1043 KR 1044 (1085)
Q Consensus 1043 ~~ 1044 (1085)
..
T Consensus 410 ~~ 411 (430)
T 1w1w_A 410 YR 411 (430)
T ss_dssp EE
T ss_pred EE
Confidence 64
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=99.11 E-value=1.4e-11 Score=143.64 Aligned_cols=81 Identities=15% Similarity=0.118 Sum_probs=68.3
Q ss_pred cccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCC-------C--CCceEEEEccCCCCC
Q 001400 151 LDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEF-------V--PPRTSAYVSQQDWQV 221 (1085)
Q Consensus 151 L~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~-------~--~~~~~~yv~Q~d~~~ 221 (1085)
-+++|+.+++|++++|+||||||||||+++|+|++.+. +|+|.++|.+.... . .++.++|++|+...+
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~---~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~ 359 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQ---GKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGAD 359 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCC
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhc---CCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcC
Confidence 46899999999999999999999999999999998765 89999987665321 0 134689999998878
Q ss_pred CCCCHHHHHHHhh
Q 001400 222 AEMTVRETLDFAG 234 (1085)
Q Consensus 222 ~~lTV~E~l~f~~ 234 (1085)
+.+||++++.++.
T Consensus 360 p~~tV~e~l~~a~ 372 (503)
T 2yhs_A 360 SASVIFDAIQAAK 372 (503)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8899999998864
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=99.11 E-value=5.5e-11 Score=118.33 Aligned_cols=44 Identities=11% Similarity=0.215 Sum_probs=36.9
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCce-EEEEecCc
Q 001400 984 VANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRT-IVCTIHQP 1028 (1085)
Q Consensus 984 ~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~t-vi~~~H~~ 1028 (1085)
+.+|++|++|||++ +|...+..+.++++.+.++|++ +|+++|.+
T Consensus 81 ~~~~~lLilDE~~~-~~~~~~~~l~~li~~~~~~g~~~iiits~~~ 125 (149)
T 2kjq_A 81 AFEAEYLAVDQVEK-LGNEEQALLFSIFNRFRNSGKGFLLLGSEYT 125 (149)
T ss_dssp GGGCSEEEEESTTC-CCSHHHHHHHHHHHHHHHHTCCEEEEEESSC
T ss_pred HhCCCEEEEeCccc-cChHHHHHHHHHHHHHHHcCCcEEEEECCCC
Confidence 45799999999998 6655588899999998877888 88899854
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=1.6e-12 Score=147.44 Aligned_cols=182 Identities=13% Similarity=0.067 Sum_probs=109.5
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCC-------CCCceEEEEccCCCC
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEF-------VPPRTSAYVSQQDWQ 220 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~-------~~~~~~~yv~Q~d~~ 220 (1085)
..+|+++|+.+++|++++|+||||||||||+++|+|.+.+. +|+|.+.|.+.... ..++.++|++|++..
T Consensus 42 ~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~---~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~ 118 (337)
T 2qm8_A 42 RDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAA---GHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNA 118 (337)
T ss_dssp HHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTE
T ss_pred HHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhC---CCEEEEEEEcCcccccccchHHHhhhheeeccCccc
Confidence 35899999999999999999999999999999999998765 89999998776322 224568999999877
Q ss_pred CCCC------------CHHHHHHHh-h-h-----hcCCCCchhhhHHHHHHHHHhCC----CCCchHHHHHHHhhhcCcc
Q 001400 221 VAEM------------TVRETLDFA-G-Q-----CQGVGSKYDMITELARREKIAGI----KPDEDLDIFMKSFALGGQK 277 (1085)
Q Consensus 221 ~~~l------------TV~E~l~f~-~-~-----~~~~~~~~~~~~~~~~~e~~~~~----~~~~d~~~~~~~~~~~~~~ 277 (1085)
+... +++|.+... . . ...+|-... +.. .+...+. .....-+. .+ .
T Consensus 119 ~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~---~~~-v~~~~d~vl~v~d~~~~~~-~~-------~ 186 (337)
T 2qm8_A 119 FIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQS---ETA-VADLTDFFLVLMLPGAGDE-LQ-------G 186 (337)
T ss_dssp EEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSC---HHH-HHTTSSEEEEEECSCC--------------
T ss_pred ccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcc---hhh-HHhhCCEEEEEEcCCCccc-HH-------H
Confidence 6532 233333110 0 0 001111100 000 0000000 00000000 00 0
Q ss_pred hhHHHHHHHHHhCCcccccccccCcccccCchhhhhHHHHHHHHhC------CCcEeEEeCCCCCCCHHHHHHHHHHHHH
Q 001400 278 TSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVG------PARVLFMDEISNGLDSSTTYQIIKYLKH 351 (1085)
Q Consensus 278 ~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqkqRvsia~al~~------~p~vlllDEptsgLD~~~~~~i~~~l~~ 351 (1085)
....+..+...+.+ +..|.. ....+|+|++|++..+.+++. .|++++ +|++|......+++.|.+
T Consensus 187 i~~~i~~~~~ivvl-NK~Dl~----~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~ 257 (337)
T 2qm8_A 187 IKKGIFELADMIAV-NKADDG----DGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIED 257 (337)
T ss_dssp CCTTHHHHCSEEEE-ECCSTT----CCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHH
T ss_pred HHHHHhccccEEEE-Echhcc----CchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHH
Confidence 00011122222223 222211 113589999999999999887 588877 999999999999999987
Q ss_pred HH
Q 001400 352 ST 353 (1085)
Q Consensus 352 ~~ 353 (1085)
..
T Consensus 258 ~~ 259 (337)
T 2qm8_A 258 HR 259 (337)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=99.09 E-value=7.6e-12 Score=140.64 Aligned_cols=142 Identities=13% Similarity=0.082 Sum_probs=94.5
Q ss_pred eCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCChh-------cccce--EEEEccCCCCCCCCCHHHHH
Q 001400 853 RPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE-------TFARI--SGYCEQNDIHSPGLTVLESL 923 (1085)
Q Consensus 853 ~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~-------~~~~~--~gy~~Q~~~~~~~~tv~e~l 923 (1085)
++|++++|+||||||||||++.|+|... +..|+|.+.|.+.... .+++. +.|++|.....|..+++|++
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~--~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l 204 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLK--NHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAI 204 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHH--HTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH--hcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHH
Confidence 6899999999999999999999999654 3468999999875321 12233 55999998888999999999
Q ss_pred HHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHH
Q 001400 924 LFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARA 1003 (1085)
Q Consensus 924 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEPtsgLD~~~ 1003 (1085)
.+...... +. -+++..++.+... .=.++.-.+++++..++.+++||.+|. .
T Consensus 205 ~~~~~~~~--d~----------vliDtaG~~~~~~------------~l~~eL~~i~ral~~de~llvLDa~t~-~---- 255 (328)
T 3e70_C 205 QHAKARGI--DV----------VLIDTAGRSETNR------------NLMDEMKKIARVTKPNLVIFVGDALAG-N---- 255 (328)
T ss_dssp HHHHHHTC--SE----------EEEEECCSCCTTT------------CHHHHHHHHHHHHCCSEEEEEEEGGGT-T----
T ss_pred HHHHhccc--hh----------hHHhhccchhHHH------------HHHHHHHHHHHHhcCCCCEEEEecHHH-H----
Confidence 76432110 00 0011112111111 112333458899998888888885554 3
Q ss_pred HHHHHHHHHHHHH-CCceEEEEecC
Q 001400 1004 AAIVMRTVRNIVN-TGRTIVCTIHQ 1027 (1085)
Q Consensus 1004 ~~~i~~~l~~~~~-~g~tvi~~~H~ 1027 (1085)
.+++.++.+.+ .+.|+|++||.
T Consensus 256 --~~~~~~~~~~~~~~it~iilTKl 278 (328)
T 3e70_C 256 --AIVEQARQFNEAVKIDGIILTKL 278 (328)
T ss_dssp --HHHHHHHHHHHHSCCCEEEEECG
T ss_pred --HHHHHHHHHHHhcCCCEEEEeCc
Confidence 44555566653 58999999995
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 | Back alignment and structure |
|---|
Probab=99.08 E-value=4.2e-12 Score=146.99 Aligned_cols=156 Identities=17% Similarity=0.184 Sum_probs=89.2
Q ss_pred eeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCChhcccceEEEEccCCCCCCCCCHHHHHHH
Q 001400 846 VNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLESLLF 925 (1085)
Q Consensus 846 ~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gy~~Q~~~~~~~~tv~e~l~~ 925 (1085)
++|+++++.|+.++|+|+||||||||+++|+|... .+.+++.. +....+|++.+++. ..+++.|..-+
T Consensus 148 ~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~--------~i~~~~ft--Tl~p~~G~V~~~~~--~~~~l~DtpGl 215 (416)
T 1udx_A 148 RRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP--------KIAPYPFT--TLSPNLGVVEVSEE--ERFTLADIPGI 215 (416)
T ss_dssp EEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC--------EECCCTTC--SSCCEEEEEECSSS--CEEEEEECCCC
T ss_pred eeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc--------cccCcccc--eecceeeEEEecCc--ceEEEEecccc
Confidence 69999999999999999999999999999998642 23344321 12233555555431 00111111000
Q ss_pred hhhhcCCCcccHHHHH--HHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHH
Q 001400 926 SAWLRLPSEIELETQR--AFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARA 1003 (1085)
Q Consensus 926 ~~~~~~~~~~~~~~~~--~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEPtsgLD~~~ 1003 (1085)
...............+ +.++.++..+++. +. ....||+|++|++.+|++|+.+|.||++ +.+|...
T Consensus 216 i~~a~~~~~L~~~fl~~~era~~lL~vvDls---~~-----~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~~ 283 (416)
T 1udx_A 216 IEGASEGKGLGLEFLRHIARTRVLLYVLDAA---DE-----PLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLLE 283 (416)
T ss_dssp CCCGGGSCCSCHHHHHHHTSSSEEEEEEETT---SC-----HHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTSC
T ss_pred ccchhhhhhhhHHHHHHHHHHHhhhEEeCCc---cC-----CHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChhh
Confidence 0000000001111000 0011112222221 11 1246999999999999999999999999 9999987
Q ss_pred HHHHHHHHHHHH-HCCceEEEEec
Q 001400 1004 AAIVMRTVRNIV-NTGRTIVCTIH 1026 (1085)
Q Consensus 1004 ~~~i~~~l~~~~-~~g~tvi~~~H 1026 (1085)
. ..++.+++.. +.|.+++.+|.
T Consensus 284 ~-~~~~~l~~~l~~~g~~vi~iSA 306 (416)
T 1udx_A 284 E-EAVKALADALAREGLAVLPVSA 306 (416)
T ss_dssp H-HHHHHHHHHHHTTTSCEEECCT
T ss_pred H-HHHHHHHHHHHhcCCeEEEEEC
Confidence 6 4444444443 45777776664
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=99.08 E-value=1.1e-11 Score=139.33 Aligned_cols=75 Identities=15% Similarity=0.087 Sum_probs=62.0
Q ss_pred eEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCC---------CceEEEEccCCCCCCCCCHH
Q 001400 157 IIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP---------PRTSAYVSQQDWQVAEMTVR 227 (1085)
Q Consensus 157 ~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~---------~~~~~yv~Q~d~~~~~lTV~ 227 (1085)
..++|++++|+||||||||||++.|+|.+.+. +|+|.++|.+...... +..+.|++|+....|.+||+
T Consensus 125 ~~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~---~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~ 201 (328)
T 3e70_C 125 KAEKPYVIMFVGFNGSGKTTTIAKLANWLKNH---GFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAY 201 (328)
T ss_dssp SSCSSEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHHhc---CCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHH
Confidence 34789999999999999999999999999775 8999999987643221 12356999998889999999
Q ss_pred HHHHHhh
Q 001400 228 ETLDFAG 234 (1085)
Q Consensus 228 E~l~f~~ 234 (1085)
|++.++.
T Consensus 202 e~l~~~~ 208 (328)
T 3e70_C 202 DAIQHAK 208 (328)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998753
|
| >1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=7e-12 Score=145.40 Aligned_cols=137 Identities=19% Similarity=0.130 Sum_probs=90.4
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCC-------CceEEEEc-----
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP-------PRTSAYVS----- 215 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~-------~~~~~yv~----- 215 (1085)
..+|+++ + .++|++++|+|||||||||||++|+|.+.+. +|+|.+.|.++..... .+.++|.+
T Consensus 156 ~~~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~~---~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr 230 (418)
T 1p9r_A 156 HDNFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNSS---ERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLR 230 (418)
T ss_dssp HHHHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCCT---TSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHH
T ss_pred HHHHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCCC---CCEEEEecccchhccCCcceEEEccccCcCHHHHHH
Confidence 3578888 4 4899999999999999999999999999875 8999999987642111 12334443
Q ss_pred ----cCCCC--CCC----CCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHH
Q 001400 216 ----QQDWQ--VAE----MTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYI 285 (1085)
Q Consensus 216 ----Q~d~~--~~~----lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 285 (1085)
|++.. +++ .|+++++.++..-+..-.. +........++ .
T Consensus 231 ~~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~t------------------------------lh~~~~~~~i~-r 279 (418)
T 1p9r_A 231 AILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMST------------------------------LHTNTAVGAVT-R 279 (418)
T ss_dssp HHGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEE------------------------------ECCSSSHHHHH-H
T ss_pred HHhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccc------------------------------cchhhHHHHHH-H
Confidence 77654 344 5788887764311100000 00000011122 4
Q ss_pred HHHhCCcccccccccCcccccCchhhhhHHHHHHHHhCCCcEeE
Q 001400 286 MKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLF 329 (1085)
Q Consensus 286 l~~lgL~~~~dt~vg~~~~~~LSGGqkqRvsia~al~~~p~vll 329 (1085)
|..+|++... ....|||||+|| ||++|+.+|++..
T Consensus 280 L~~lgl~~~~-------~~~~LSgg~~QR--LaraL~~~p~~~~ 314 (418)
T 1p9r_A 280 LRDMGIEPFL-------ISSSLLGVLAQR--LVRTLCPDCKEPY 314 (418)
T ss_dssp HHHHTCCHHH-------HHHHEEEEEEEE--EEEEECTTTCEEE
T ss_pred HHHcCCcHHH-------HHHHHHHHHHHH--hhhhhcCCCCccC
Confidence 5677886542 224699999999 9999999999876
|
| >2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.05 E-value=9.7e-13 Score=133.89 Aligned_cols=139 Identities=15% Similarity=0.198 Sum_probs=81.5
Q ss_pred eEEEEEccCCCChhHHHhhhhCCCCC-CeeeeEEEEcCccCCh------hccc-ceEE----EEccCCCCCCCCCHHHHH
Q 001400 856 VLTALVGVSGAGKTTLMDVLAGRKTG-GIIEGDIYISGYPKRQ------ETFA-RISG----YCEQNDIHSPGLTVLESL 923 (1085)
Q Consensus 856 e~~al~G~nGaGKSTLl~~l~g~~~~-~~~~G~i~i~g~~~~~------~~~~-~~~g----y~~Q~~~~~~~~tv~e~l 923 (1085)
++++|+|+||||||||+++|+|...+ +...|.|.++|.++.. ..++ +.+| +++|+..++.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~i-------- 74 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAFI-------- 74 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEEE--------
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEEE--------
Confidence 57999999999999999999996442 2337999999987321 2333 3456 7888765440
Q ss_pred HHhhhhcCCCcccHHHHHHHHHHHHHH-cCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEE-------EEeCC
Q 001400 924 LFSAWLRLPSEIELETQRAFVEEVMEL-VELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIV-------FMDEP 995 (1085)
Q Consensus 924 ~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~il-------llDEP 995 (1085)
+.. .. +....+++.++. +. + .|..++ .+||+|||||++||||++.+|++. .=|.|
T Consensus 75 ------~~~---~~-~~~a~l~~~i~~~l~--g-~dt~i~----EglSgGq~qri~lARall~~p~i~~~~~~a~~~~~~ 137 (171)
T 2f1r_A 75 ------RRV---SE-EEGNDLDWIYERYLS--D-YDLVIT----EGFSKAGKDRIVVVKKPEEVEHFRQGRILAVVCDER 137 (171)
T ss_dssp ------EEC---CH-HHHTCHHHHHHHHTT--T-CSEEEE----ESCGGGCCCEEEECSSGGGGGGGCSSCEEEEECSSC
T ss_pred ------ecC---Ch-hhhhCHHHHHHhhCC--C-CCEEEE----CCcCCCCCcEEEEEecccCCCccCccceEEEEecCC
Confidence 000 00 001124445544 43 2 344443 359999999999999999998762 22444
Q ss_pred CCC---CCHHHHHHHHHHHHHHHHCCc
Q 001400 996 TSG---LDARAAAIVMRTVRNIVNTGR 1019 (1085)
Q Consensus 996 tsg---LD~~~~~~i~~~l~~~~~~g~ 1019 (1085)
..+ +|......+.+.|.+...+|.
T Consensus 138 ~~~~~~f~~~~~~~~a~~i~~~~~~~~ 164 (171)
T 2f1r_A 138 VDGHKWFRRDEVERIAEFILSLLREGG 164 (171)
T ss_dssp CSSSCEECTTCHHHHHHHHHHHHTC--
T ss_pred cccCcccCcccHHHHHHHHHHHHhccC
Confidence 322 334445667777766555554
|
| >1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1 | Back alignment and structure |
|---|
Probab=99.05 E-value=1.3e-13 Score=155.44 Aligned_cols=167 Identities=15% Similarity=0.117 Sum_probs=93.3
Q ss_pred CeEEEEeCCCCCChhHHHHHHHhhhCCC-----CceeeEEEECCccCCCCCC------------------CceEEEE---
Q 001400 161 SRLTLLLGPPSSGKTTLLLALAGRLGHH-----LQVSGKITYNGHGFKEFVP------------------PRTSAYV--- 214 (1085)
Q Consensus 161 G~~~~llGp~GsGKSTLL~~L~G~l~~~-----~~~~G~i~~~G~~~~~~~~------------------~~~~~yv--- 214 (1085)
=++++|+|+|||||||||+.|+|..... .+..|+|.++|.++..... .+.++++
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~ 83 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDN 83 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHH
T ss_pred ccEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhH
Confidence 3689999999999999999999975210 1238999999987654311 1234555
Q ss_pred ccCCCCCCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCccc
Q 001400 215 SQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTC 294 (1085)
Q Consensus 215 ~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~ 294 (1085)
+|+...+++.+|.||..++... .......... ... . ...++.++..+++.+.
T Consensus 84 ~q~~~~~~~~~v~E~~~l~~p~-------~~~~~~~~~~---------~~~---~---------~~~l~~~l~~vd~~~~ 135 (318)
T 1nij_A 84 LDKGNIQFDRLVIECTGMADPG-------PIIQTFFSHE---------VLC---Q---------RYLLDGVIALVDAVHA 135 (318)
T ss_dssp HHHTSCCCSEEEEEEETTCCHH-------HHHHHHHHSH---------HHH---H---------HEEEEEEEEEEETTTH
T ss_pred HhcCCCCCCEEEEeCCCCCCHH-------HHHHHHhcCc---------ccc---C---------eEEECCEEEEEEHHHH
Confidence 4554444556666665442100 0000000000 000 0 0001112223333333
Q ss_pred ccccccCcccccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhh
Q 001400 295 ADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYEL 374 (1085)
Q Consensus 295 ~dt~vg~~~~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~ 374 (1085)
.+.. ..+|||||||+..+++++.+|+++ ||| ..+.+.++++. . +++|+.++|...+...+
T Consensus 136 ~~~~------~~ls~g~~Q~~~ad~ill~k~dl~--de~---------~~l~~~l~~l~--~-~~~ii~~sh~~~~~~~l 195 (318)
T 1nij_A 136 DEQM------NQFTIAQSQVGYADRILLTKTDVA--GEA---------EKLHERLARIN--A-RAPVYTVTHGDIDLGLL 195 (318)
T ss_dssp HHHH------HHCHHHHHHHHTCSEEEEECTTTC--SCT---------HHHHHHHHHHC--S-SSCEEECCSSCCCGGGG
T ss_pred HHHH------hhchHHHHHHHhCCEEEEECcccC--CHH---------HHHHHHHHHhC--C-CCeEEEecccCCCHHHH
Confidence 3222 158999999998888888888877 888 67777887764 2 34455555643333333
Q ss_pred c
Q 001400 375 F 375 (1085)
Q Consensus 375 ~ 375 (1085)
+
T Consensus 196 ~ 196 (318)
T 1nij_A 196 F 196 (318)
T ss_dssp S
T ss_pred h
Confidence 3
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=1.3e-10 Score=119.48 Aligned_cols=46 Identities=15% Similarity=0.197 Sum_probs=41.6
Q ss_pred hcCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHHCCceEEEEecCcc
Q 001400 984 VANPSIVFMDEPTS-GLDARAAAIVMRTVRNIVNTGRTIVCTIHQPS 1029 (1085)
Q Consensus 984 ~~~p~illlDEPts-gLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~ 1029 (1085)
+.+|++|+||||++ ++|+..+..+.+++....+.|+++|++||.+.
T Consensus 98 ~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~ 144 (180)
T 3ec2_A 98 VLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYSL 144 (180)
T ss_dssp HHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCCS
T ss_pred hcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCCh
Confidence 45899999999995 99999999999999988778999999999864
|
| >2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 | Back alignment and structure |
|---|
Probab=99.05 E-value=2.1e-12 Score=153.81 Aligned_cols=85 Identities=19% Similarity=0.105 Sum_probs=66.5
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCCCceEEEEccCCCCCCCCCHH
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVR 227 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 227 (1085)
..+++++++.+++|+.++|+|||||||||||++|+|.+++. +|.|+++|.+--.......++++.|........|..
T Consensus 247 ~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~---~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~ 323 (511)
T 2oap_1 247 SGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPD---AKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMY 323 (511)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTT---CCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHH
T ss_pred HHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCC---CCEEEEcCcccccCCCCCeEEEEeecccccCCcCHH
Confidence 45889999999999999999999999999999999999876 899999986522222234567777765533456888
Q ss_pred HHHHHhhh
Q 001400 228 ETLDFAGQ 235 (1085)
Q Consensus 228 E~l~f~~~ 235 (1085)
+.+..+.+
T Consensus 324 ~~l~~~LR 331 (511)
T 2oap_1 324 DLLRAALR 331 (511)
T ss_dssp HHHHTTGG
T ss_pred HHHHHhhc
Confidence 88876554
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* | Back alignment and structure |
|---|
Probab=99.04 E-value=3.8e-10 Score=129.90 Aligned_cols=98 Identities=14% Similarity=0.208 Sum_probs=74.1
Q ss_pred HHHHHHHHhCCcc-------cccccccC----cccccCchhhhhHH------HHHHHHhCC-CcEeEEeCCCCCCCHHHH
Q 001400 281 VVEYIMKILGLDT-------CADTLVGD----EMLKGISGGQKKRL------TTGELLVGP-ARVLFMDEISNGLDSSTT 342 (1085)
Q Consensus 281 ~~~~~l~~lgL~~-------~~dt~vg~----~~~~~LSGGqkqRv------sia~al~~~-p~vlllDEptsgLD~~~~ 342 (1085)
.++..++.+++++ ..+..+.+ ..+..+|||||||+ ++|++++.+ |++|+|||||+|||+.++
T Consensus 244 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~ 323 (371)
T 3auy_A 244 YLNEAFSEFDLPYSFVELTKDFEVRVHAPNGVLTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRR 323 (371)
T ss_dssp HHHHHHHHTTCSCSCEEECTTCCEEEEETTEEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHH
T ss_pred HHHHHHHHhcCcceEEEEccceeEEEEcCCCccchHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHH
Confidence 3456777787765 11222222 34567999999988 567899999 999999999999999999
Q ss_pred HHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEec
Q 001400 343 YQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLS 382 (1085)
Q Consensus 343 ~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~ 382 (1085)
..+.+.|+++.. +++++ .++|.. ++...+|++++|+
T Consensus 324 ~~l~~~l~~~~~--~~~vi-~~th~~-~~~~~~d~~~~l~ 359 (371)
T 3auy_A 324 AKLAEIFRKVKS--IPQMI-IITHHR-ELEDVADVIINVK 359 (371)
T ss_dssp HHHHHHHHHCCS--CSEEE-EEESCG-GGGGGCSEEEEEE
T ss_pred HHHHHHHHHhcc--CCeEE-EEEChH-HHHhhCCEEEEEE
Confidence 999999987532 34544 455664 4788999999996
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=8.1e-11 Score=120.96 Aligned_cols=48 Identities=17% Similarity=0.089 Sum_probs=36.9
Q ss_pred hCCCcEeEEeCCCC-CCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhH
Q 001400 322 VGPARVLFMDEISN-GLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPE 370 (1085)
Q Consensus 322 ~~~p~vlllDEpts-gLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~ 370 (1085)
+.+|++|+||||++ ++|......+.+.+..... .+.++|++.+++..+
T Consensus 98 ~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~-~~~~ii~tsn~~~~~ 146 (180)
T 3ec2_A 98 VLNSPVLVLDDLGSERLSDWQRELISYIITYRYN-NLKSTIITTNYSLQR 146 (180)
T ss_dssp HHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHH-TTCEEEEECCCCSCC
T ss_pred hcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHH-cCCCEEEEcCCChhH
Confidence 44899999999985 9999999999998887653 356777766555443
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.00 E-value=5.9e-11 Score=132.48 Aligned_cols=124 Identities=13% Similarity=0.093 Sum_probs=79.4
Q ss_pred EeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEE---CCccCCCCCC--C-ceEEEEccCCCCC-----CCCCH
Q 001400 158 IRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITY---NGHGFKEFVP--P-RTSAYVSQQDWQV-----AEMTV 226 (1085)
Q Consensus 158 i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~---~G~~~~~~~~--~-~~~~yv~Q~d~~~-----~~lTV 226 (1085)
+.+|++++|+||||||||||+|+|+ .+.+. +|+|.+ +|.+.+.... . +.++|++|++.+. +.+|+
T Consensus 162 ~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~---~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~ 237 (302)
T 2yv5_A 162 YLEGFICILAGPSGVGKSSILSRLT-GEELR---TQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP 237 (302)
T ss_dssp HTTTCEEEEECSTTSSHHHHHHHHH-SCCCC---CSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG
T ss_pred hccCcEEEEECCCCCCHHHHHHHHH-HhhCc---ccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH
Confidence 3468999999999999999999999 87765 899999 8877654321 1 2579999998543 78899
Q ss_pred HHHH--HHhhhhcCCCCchhhhHHH-HHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcc-cccccccCc
Q 001400 227 RETL--DFAGQCQGVGSKYDMITEL-ARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDT-CADTLVGDE 302 (1085)
Q Consensus 227 ~E~l--~f~~~~~~~~~~~~~~~~~-~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~-~~dt~vg~~ 302 (1085)
|++ .|+. . .+. |+ ..+..+ ..+....++++++.+||+. .++...
T Consensus 238 -e~l~~~f~~-~----------~~~~c~---~~~~~~--------------~~e~~~~v~~~l~~~~L~~~~~~~~~--- 285 (302)
T 2yv5_A 238 -REVRNYFRE-F----------LRYQCK---YPDCTH--------------TNEPGCAVKEAVKNGEISCERYKSYL--- 285 (302)
T ss_dssp -GGGGGGCGG-G----------HHHHHH---STTCCS--------------SSCTTCHHHHHHHTTSSCHHHHHHHH---
T ss_pred -HHHHHHHHH-H----------HHccCC---CCCCCC--------------CCCCCCHHHHHHHcCCCCHHHHHHHH---
Confidence 888 4431 0 000 00 000000 0111234888999999975 555443
Q ss_pred ccccCchhhhhHHHHHH
Q 001400 303 MLKGISGGQKKRLTTGE 319 (1085)
Q Consensus 303 ~~~~LSGGqkqRvsia~ 319 (1085)
+.|||.++|++.|||
T Consensus 286 --~~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 286 --KIIKVYLEEIKELCR 300 (302)
T ss_dssp --HHTTCCCTTHHHHSS
T ss_pred --HHHHHHHHHHHHHhc
Confidence 469999999999986
|
| >3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=2.4e-10 Score=131.74 Aligned_cols=148 Identities=22% Similarity=0.267 Sum_probs=86.4
Q ss_pred EEEeCCeEEEEEccCCCChhHHHhhh--hCCCC---CCeeeeEEEEcCccC-Chhc---ccceEEEEccCCCCCCCCCHH
Q 001400 850 GAFRPGVLTALVGVSGAGKTTLMDVL--AGRKT---GGIIEGDIYISGYPK-RQET---FARISGYCEQNDIHSPGLTVL 920 (1085)
Q Consensus 850 ~~i~~Ge~~al~G~nGaGKSTLl~~l--~g~~~---~~~~~G~i~i~g~~~-~~~~---~~~~~gy~~Q~~~~~~~~tv~ 920 (1085)
+-|++|++++|+||||||||||++.| .+..+ ++...+.+++++... .... +++.+|+.+
T Consensus 173 GGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~------------ 240 (400)
T 3lda_A 173 GGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDP------------ 240 (400)
T ss_dssp TSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCH------------
T ss_pred CCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCCh------------
Confidence 45789999999999999999999954 45432 112235777777532 1100 011111110
Q ss_pred HHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCH-HHHHHHHHHHHHh--cCCCEEEEeCCCC
Q 001400 921 ESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLST-EQRKRLTIAVELV--ANPSIVFMDEPTS 997 (1085)
Q Consensus 921 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~-Gqrqrl~iA~aL~--~~p~illlDEPts 997 (1085)
+++++.+.+ . ...+. .+.+.+.-+.+++ .+|+++++||||+
T Consensus 241 ------------------------~~vleni~~--------~----~~~~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~ 284 (400)
T 3lda_A 241 ------------------------DDALNNVAY--------A----RAYNADHQLRLLDAAAQMMSESRFSLIVVDSVMA 284 (400)
T ss_dssp ------------------------HHHHHTEEE--------E----ECCSHHHHHHHHHHHHHHHHHSCEEEEEEETGGG
T ss_pred ------------------------HhHhhcEEE--------e----ccCChHHHHHHHHHHHHHHHhcCCceEEecchhh
Confidence 112211100 0 01222 2334444444433 4699999999999
Q ss_pred CCCHHHH------------HHHHHHHHHHHHC-CceEEEEecCcc------------------HHHHHhcCEEEEEecC
Q 001400 998 GLDARAA------------AIVMRTVRNIVNT-GRTIVCTIHQPS------------------IDIFESFDELLFMKRG 1045 (1085)
Q Consensus 998 gLD~~~~------------~~i~~~l~~~~~~-g~tvi~~~H~~~------------------~~~~~~~d~il~l~~g 1045 (1085)
.+|.... ..+++.|++++++ |.|||+|+|... ..+...+|.++.|.++
T Consensus 285 ~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~~~ 363 (400)
T 3lda_A 285 LYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFKKG 363 (400)
T ss_dssp GCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHHHHCSEEEEEEEC
T ss_pred hCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHHHhcceEEEEEec
Confidence 9996533 5678888888754 999999999721 1134557999999864
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 | Back alignment and structure |
|---|
Probab=98.98 E-value=4.3e-11 Score=138.56 Aligned_cols=170 Identities=17% Similarity=0.157 Sum_probs=98.9
Q ss_pred cccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCCCceEEEEccCCCCCCCCCHHHHH
Q 001400 151 LDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETL 230 (1085)
Q Consensus 151 L~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l 230 (1085)
-+++++.+++|+.++|+|+|||||||||++|+|..+ .+.+.+.... ...+++|.+++. ..+++.++.
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~---------~i~~~~ftTl--~p~~G~V~~~~~--~~~~l~Dtp 213 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP---------KIAPYPFTTL--SPNLGVVEVSEE--ERFTLADIP 213 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC---------EECCCTTCSS--CCEEEEEECSSS--CEEEEEECC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc---------cccCccccee--cceeeEEEecCc--ceEEEEecc
Confidence 378999999999999999999999999999998632 2334333322 234566666541 111221111
Q ss_pred HH---hhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCcccccC
Q 001400 231 DF---AGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGI 307 (1085)
Q Consensus 231 ~f---~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 307 (1085)
-+ +....+.+. . +.+. ..+++.++..+++. +.....+
T Consensus 214 Gli~~a~~~~~L~~------~------------------fl~~--------~era~~lL~vvDls--------~~~~~~l 253 (416)
T 1udx_A 214 GIIEGASEGKGLGL------E------------------FLRH--------IARTRVLLYVLDAA--------DEPLKTL 253 (416)
T ss_dssp CCCCCGGGSCCSCH------H------------------HHHH--------HTSSSEEEEEEETT--------SCHHHHH
T ss_pred ccccchhhhhhhhH------H------------------HHHH--------HHHHHhhhEEeCCc--------cCCHHHH
Confidence 10 000000000 0 0000 00011122233332 2334569
Q ss_pred chhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeE
Q 001400 308 SGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDV 378 (1085)
Q Consensus 308 SGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i 378 (1085)
|+||+||+.+|++|...|.++++ +.+|.... ..++.+++..+..+.+++.+..+....+.++++.+
T Consensus 254 s~g~~el~~la~aL~~~P~ILVl----NKlDl~~~-~~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL~~~i 319 (416)
T 1udx_A 254 ETLRKEVGAYDPALLRRPSLVAL----NKVDLLEE-EAVKALADALAREGLAVLPVSALTGAGLPALKEAL 319 (416)
T ss_dssp HHHHHHHHHHCHHHHHSCEEEEE----ECCTTSCH-HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHhHHhhcCCEEEEE----ECCChhhH-HHHHHHHHHHHhcCCeEEEEECCCccCHHHHHHHH
Confidence 99999999999999999999999 99999876 55555555444334455555545555555555543
|
| >1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=9.6e-13 Score=152.61 Aligned_cols=149 Identities=15% Similarity=0.067 Sum_probs=96.6
Q ss_pred ccccccccccCCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCCh-------hcccc
Q 001400 830 VELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ-------ETFAR 902 (1085)
Q Consensus 830 ~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~-------~~~~~ 902 (1085)
+.+++++..++...+|+++ + .++|++++|+|||||||||||++|+|... +..|.|.+.|.++.. ....+
T Consensus 144 ~~l~~Lg~~~~~~~~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~--~~~g~I~~~ed~ie~~~~~~~q~~v~~ 219 (418)
T 1p9r_A 144 LDLHSLGMTAHNHDNFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELN--SSERNILTVEDPIEFDIDGIGQTQVNP 219 (418)
T ss_dssp CCGGGSCCCHHHHHHHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHC--CTTSCEEEEESSCCSCCSSSEEEECBG
T ss_pred CCHHHcCCCHHHHHHHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcC--CCCCEEEEecccchhccCCcceEEEcc
Confidence 3455666655556678888 4 48999999999999999999999999654 236899998876531 12233
Q ss_pred eEEEEc---------cCCCCC--CC----CCHHHHHHHhhhhcCC-CcccHHHHHHHHHHHHHHcCCCcccccccCCCCC
Q 001400 903 ISGYCE---------QNDIHS--PG----LTVLESLLFSAWLRLP-SEIELETQRAFVEEVMELVELTSLSGALIGLPGI 966 (1085)
Q Consensus 903 ~~gy~~---------Q~~~~~--~~----~tv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~ 966 (1085)
.+|+.+ |++... .. .|+.+++.+...-... ...........+ +.+..+++.... . +
T Consensus 220 ~~g~~f~~~lr~~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~~i-~rL~~lgl~~~~--~-----~ 291 (418)
T 1p9r_A 220 RVDMTFARGLRAILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVGAV-TRLRDMGIEPFL--I-----S 291 (418)
T ss_dssp GGTBCHHHHHHHHGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHHHH-HHHHHHTCCHHH--H-----H
T ss_pred ccCcCHHHHHHHHhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHHHH-HHHHHcCCcHHH--H-----H
Confidence 445554 877652 22 5888988765321100 000000011122 345666776543 2 2
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEE
Q 001400 967 NGLSTEQRKRLTIAVELVANPSIVFM 992 (1085)
Q Consensus 967 ~~LS~Gqrqrl~iA~aL~~~p~illl 992 (1085)
..|||||+|| ||++|+.+|++..-
T Consensus 292 ~~LSgg~~QR--LaraL~~~p~~~~~ 315 (418)
T 1p9r_A 292 SSLLGVLAQR--LVRTLCPDCKEPYE 315 (418)
T ss_dssp HHEEEEEEEE--EEEEECTTTCEEEE
T ss_pred HHHHHHHHHH--hhhhhcCCCCccCC
Confidence 4699999999 99999999998763
|
| >1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=98.96 E-value=3.1e-11 Score=133.62 Aligned_cols=128 Identities=15% Similarity=0.111 Sum_probs=81.9
Q ss_pred eCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCChhcccceEEEEccCCCCCCCCCHHHHHHHhhh----
Q 001400 853 RPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLESLLFSAW---- 928 (1085)
Q Consensus 853 ~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gy~~Q~~~~~~~~tv~e~l~~~~~---- 928 (1085)
+++.++||+|++|||||||.+.|.+.... .| . -.+.+.+|+|++.+++. +.++++.++..
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~---~g------~------~~~~~~iv~~D~f~~~~-~~~~~l~~~~~~~~l 92 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLME---KY------G------GEKSIGYASIDDFYLTH-EDQLKLNEQFKNNKL 92 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHH---HH------G------GGSCEEEEEGGGGBCCH-HHHHHHHHHTTTCGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhh---cC------C------CCceEEEeccccccCCh-HHHHHHhccccccch
Confidence 46889999999999999999999985431 11 0 02345566998887754 88899877521
Q ss_pred hc---CCCcccHHHHHHHHHHHHHHcCCCc--ccccccCCC-CCCCCCHHHHHHHHHH--HHHhcCCCEEEEeCCCCCCC
Q 001400 929 LR---LPSEIELETQRAFVEEVMELVELTS--LSGALIGLP-GINGLSTEQRKRLTIA--VELVANPSIVFMDEPTSGLD 1000 (1085)
Q Consensus 929 ~~---~~~~~~~~~~~~~~~~~l~~~~l~~--~~~~~~~~~-~~~~LS~Gqrqrl~iA--~aL~~~p~illlDEPtsgLD 1000 (1085)
+. .|.... .+...+.++.+.... .....+..| ....+||||+||+.+| +++ +|+|||+||||+++|
T Consensus 93 ~~~~g~p~a~d----~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~--~~~IlIlEG~~~~ld 166 (290)
T 1odf_A 93 LQGRGLPGTHD----MKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKL--PVDIFILEGWFLGFN 166 (290)
T ss_dssp GSSSCSTTSBC----HHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEES--SCSEEEEEESSTTCC
T ss_pred hhhccCcchhH----HHHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEc--CCCEEEEeCccccCC
Confidence 11 122222 223445555543220 000000001 1246999999999987 555 899999999999999
Q ss_pred HH
Q 001400 1001 AR 1002 (1085)
Q Consensus 1001 ~~ 1002 (1085)
+.
T Consensus 167 ~~ 168 (290)
T 1odf_A 167 PI 168 (290)
T ss_dssp CC
T ss_pred cc
Confidence 85
|
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} | Back alignment and structure |
|---|
Probab=98.94 E-value=2.1e-11 Score=128.61 Aligned_cols=121 Identities=18% Similarity=0.223 Sum_probs=70.0
Q ss_pred EeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCCCceEEEEccCCCCCCCCCHHHHHHHhhhhc
Q 001400 158 IRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQ 237 (1085)
Q Consensus 158 i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~ 237 (1085)
.++|++++|+||||||||||+++|+|.+++. | ..+++|++++.++.. +..+++.... .+
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~----g---------------~~~g~v~~d~~~~~~-~~~~~~~~~~-~~ 77 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQ----G---------------LPAEVVPMDGFHLDN-RLLEPRGLLP-RK 77 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHT----T---------------CCEEEEESGGGBCCH-HHHGGGTCGG-GT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc----C---------------CceEEEecCCCcCCH-HHHHHhcccc-cC
Confidence 5789999999999999999999999998642 2 146777777654432 2222221000 00
Q ss_pred CCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCcccccCchhhhhHHHH
Q 001400 238 GVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTT 317 (1085)
Q Consensus 238 ~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqkqRvsi 317 (1085)
+.+..+ +.. .....+..+......++.+.+.. .++||||+||+++
T Consensus 78 ~~~~~~-------------------~~~---------------~~~~~l~~l~~~~~i~~p~~d~~-~~~~~g~~~~v~~ 122 (208)
T 3c8u_A 78 GAPETF-------------------DFE---------------GFQRLCHALKHQERVIYPLFDRA-RDIAIAGAAEVGP 122 (208)
T ss_dssp TSGGGB-------------------CHH---------------HHHHHHHHHHHCSCEEEEEEETT-TTEEEEEEEEECT
T ss_pred CCCchh-------------------hHH---------------HHHHHHHHHhcCCceecccCCcc-ccCCCCCceEEcC
Confidence 000000 000 01112222211122233444433 3589999999998
Q ss_pred H-HHHhCCCcEeEEeCCC
Q 001400 318 G-ELLVGPARVLFMDEIS 334 (1085)
Q Consensus 318 a-~al~~~p~vlllDEpt 334 (1085)
| ++++.++.++++|||.
T Consensus 123 ~~~~~i~eg~~~l~de~~ 140 (208)
T 3c8u_A 123 ECRVAIIEGNYLLFDAPG 140 (208)
T ss_dssp TCCEEEEEESSTTBCSTT
T ss_pred CCcEEEECCceeccCCch
Confidence 8 7777777777788873
|
| >2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 | Back alignment and structure |
|---|
Probab=98.93 E-value=5.5e-13 Score=158.72 Aligned_cols=180 Identities=12% Similarity=0.071 Sum_probs=106.0
Q ss_pred eEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCChhcccceEEEEccCCCCCCCCCHHH
Q 001400 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLE 921 (1085)
Q Consensus 842 ~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gy~~Q~~~~~~~~tv~e 921 (1085)
..+++++++.+++|+.++|+||||||||||+++|+|..+ +..|.|.++|.+.-.......+++..|........|..+
T Consensus 247 ~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~--~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~ 324 (511)
T 2oap_1 247 SGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIP--PDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYD 324 (511)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSC--TTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHH
T ss_pred HHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCC--CCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHH
Confidence 346789999999999999999999999999999999776 357999998865211111234555555433222344444
Q ss_pred HHHHhhhhcCCC-----cccHHHHH------------------HHHHHHHHHcCCCc--ccccccC-CC----CCCCCCH
Q 001400 922 SLLFSAWLRLPS-----EIELETQR------------------AFVEEVMELVELTS--LSGALIG-LP----GINGLST 971 (1085)
Q Consensus 922 ~l~~~~~~~~~~-----~~~~~~~~------------------~~~~~~l~~~~l~~--~~~~~~~-~~----~~~~LS~ 971 (1085)
.+...... .|. +....+.. ..+.++++.+.... +...+.. .. ....+|+
T Consensus 325 ~l~~~LR~-~PD~iivgEir~~E~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~~~~~s~ 403 (511)
T 2oap_1 325 LLRAALRQ-RPDYIIVGEVRGREAQTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIALVQTMWVRG 403 (511)
T ss_dssp HHHTTGGG-CCSEEEESCCCSTHHHHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEEEEEESS
T ss_pred HHHHhhcc-CCCeEEeCCcCHHHHHHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEEEEEEEEeC
Confidence 44321110 010 00000000 01223333332211 1000000 00 0124799
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCceEEE--EecCccHHHHHhcC
Q 001400 972 EQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVC--TIHQPSIDIFESFD 1037 (1085)
Q Consensus 972 Gqrqrl~iA~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~--~~H~~~~~~~~~~d 1037 (1085)
||+||+++|. + | |+|||+.....+++.|.++...|+|+++ +||+++ ++...++
T Consensus 404 G~~~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~-ei~~~~g 458 (511)
T 2oap_1 404 NTRLRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLE-KMADFLG 458 (511)
T ss_dssp SCEEEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHH-HHHHHHT
T ss_pred CCceEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHH-HHHHHcC
Confidence 9999877652 1 7 9999999888888888777666889985 899876 4555553
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.93 E-value=5.7e-12 Score=138.73 Aligned_cols=142 Identities=17% Similarity=0.159 Sum_probs=94.3
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCC---CceEEEEccCC-CCCCC
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP---PRTSAYVSQQD-WQVAE 223 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~---~~~~~yv~Q~d-~~~~~ 223 (1085)
..+++++++.+++| ++|+||||||||||+++|+|.+.+ |.|.++|.++..... .+.+++++|.. ...|.
T Consensus 33 ~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~-----~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~ 105 (274)
T 2x8a_A 33 PDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL-----NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPC 105 (274)
T ss_dssp HHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC-----EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSE
T ss_pred HHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC-----CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCC
Confidence 35899999999999 999999999999999999998753 789999977643321 13456666653 34455
Q ss_pred CCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCcc
Q 001400 224 MTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEM 303 (1085)
Q Consensus 224 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 303 (1085)
+++.|++.+.+..++. .. .+ .+.... +..
T Consensus 106 i~~~Deid~~~~~r~~--------------~~--------------------------~~------~~~~~~-----~~~ 134 (274)
T 2x8a_A 106 VIFFDEVDALCPRRSD--------------RE--------------------------TG------ASVRVV-----NQL 134 (274)
T ss_dssp EEEEETCTTTCC-------------------------------------------------------CTTHH-----HHH
T ss_pred eEeeehhhhhhcccCC--------------Cc--------------------------ch------HHHHHH-----HHH
Confidence 5555555432110000 00 00 000111 122
Q ss_pred cccCchhhhhHHHHHHHHhCCCcEeEEeCCCC------------CCCHHHHHHHHHHH
Q 001400 304 LKGISGGQKKRLTTGELLVGPARVLFMDEISN------------GLDSSTTYQIIKYL 349 (1085)
Q Consensus 304 ~~~LSGGqkqRvsia~al~~~p~vlllDEpts------------gLD~~~~~~i~~~l 349 (1085)
...|||||+||+.+++|+..+|++| ||++. -.|...+.+|++.+
T Consensus 135 l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r~gRfd~~i~~~~P~~~~r~~il~~~ 190 (274)
T 2x8a_A 135 LTEMDGLEARQQVFIMAATNRPDII--DPAILRPGRLDKTLFVGLPPPADRLAILKTI 190 (274)
T ss_dssp HHHHHTCCSTTCEEEEEEESCGGGS--CHHHHSTTSSCEEEECCSCCHHHHHHHHHHH
T ss_pred HHhhhcccccCCEEEEeecCChhhC--CHhhcCcccCCeEEEeCCcCHHHHHHHHHHH
Confidence 3469999999999999999999985 88864 23677777776654
|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=98.91 E-value=2.1e-12 Score=147.99 Aligned_cols=171 Identities=16% Similarity=0.150 Sum_probs=115.1
Q ss_pred eEeCCeEEEEeCCCCCChhHHHHHHHhhhC----C-----CCceeeEEEECCccCCC----CCCCceE---EEEccCCCC
Q 001400 157 IIRPSRLTLLLGPPSSGKTTLLLALAGRLG----H-----HLQVSGKITYNGHGFKE----FVPPRTS---AYVSQQDWQ 220 (1085)
Q Consensus 157 ~i~~G~~~~llGp~GsGKSTLL~~L~G~l~----~-----~~~~~G~i~~~G~~~~~----~~~~~~~---~yv~Q~d~~ 220 (1085)
.+++|..++|+|+||||||||+|+|+|.-. + ..+..|.|.++|..+.. ..+++.+ .++.+.+-+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 668899999999999999999999999321 1 12458999999843211 1233333 477777777
Q ss_pred CCCCCHHHHH--HHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCccccccc
Q 001400 221 VAEMTVRETL--DFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTL 298 (1085)
Q Consensus 221 ~~~lTV~E~l--~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~ 298 (1085)
...++..|++ .|...++.. +.++..+...
T Consensus 96 ~~~~s~~e~L~~~fl~~ir~~-------------------------------------------d~il~Vvd~~------ 126 (392)
T 1ni3_A 96 TKGASTGVGLGNAFLSHVRAV-------------------------------------------DAIYQVVRAF------ 126 (392)
T ss_dssp CCCCCSSSSSCHHHHHHHTTC-------------------------------------------SEEEEEEECC------
T ss_pred ccCCcHHHHHHHHHHHHHHHH-------------------------------------------HHHHHHHhcc------
Confidence 7777766655 332221110 0011111111
Q ss_pred ccCcccccCchhhhhHHHHHHHHhCCC--cEeEEeCCCCCCCHHHHHHHHHHHHHH-HhccCCEEEEEEecChhHHHhhc
Q 001400 299 VGDEMLKGISGGQKKRLTTGELLVGPA--RVLFMDEISNGLDSSTTYQIIKYLKHS-TRALDGTTVISLLQPAPEAYELF 375 (1085)
Q Consensus 299 vg~~~~~~LSGGqkqRvsia~al~~~p--~vlllDEptsgLD~~~~~~i~~~l~~~-~~~~~~t~ii~~~q~~~~~~~~~ 375 (1085)
++..+..+||+. +| +++++|||+.++|.......++.++.. .. .+.| ++ .|...++.++|
T Consensus 127 -~d~~i~~v~~~~------------dP~~di~ildeel~~~D~~~~~k~~~~l~~~~~~-~g~t-i~--sh~~~~~~~l~ 189 (392)
T 1ni3_A 127 -DDAEIIHVEGDV------------DPIRDLSIIVDELLIKDAEFVEKHLEGLRKITSR-GANT-LE--MKAKKEEQAII 189 (392)
T ss_dssp -CTTCSSCCSSSS------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC-SSCS-SS--HHHHHHHHHHH
T ss_pred -ccceeeeecccc------------CcchhhhhchhhhHHHHHHHHHHHHHHHHHHHHh-cCCc-cc--cccHHHHHHHH
Confidence 122233467654 88 999999999999999999999988876 43 2333 32 78888999999
Q ss_pred CeEE-EecCC-eEEEecChh
Q 001400 376 DDVI-LLSEG-QIVYQGPRV 393 (1085)
Q Consensus 376 D~ii-~L~~G-~iv~~G~~~ 393 (1085)
|++. +|.+| ++++.|+.+
T Consensus 190 ~~i~~~L~~G~~~~~~~~~~ 209 (392)
T 1ni3_A 190 EKVYQYLTETKQPIRKGDWS 209 (392)
T ss_dssp HHHHHHHHTTCSCGGGSCCC
T ss_pred HHHHHHhccCCceeecCCCC
Confidence 9999 99999 988877643
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=98.89 E-value=9.7e-10 Score=125.55 Aligned_cols=162 Identities=15% Similarity=0.013 Sum_probs=83.1
Q ss_pred EEEEccCCCChhHHHhhhhC-CCCCCeeeeEEEEcCccCChh-cccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCcc
Q 001400 858 TALVGVSGAGKTTLMDVLAG-RKTGGIIEGDIYISGYPKRQE-TFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEI 935 (1085)
Q Consensus 858 ~al~G~nGaGKSTLl~~l~g-~~~~~~~~G~i~i~g~~~~~~-~~~~~~gy~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~ 935 (1085)
+.|.||||+|||||+++|++ ... +..|.+.++|.+.... ...+.+++++|.+.+....+ + .. ..
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~--~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--------~~--~~ 104 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFG--PGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPS--D--------MG--NN 104 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSC--TTCCC------------------CCEECSSEEEECCC----------------C
T ss_pred EEEECCCCCCHHHHHHHHHHHHcC--CCCCeEEecceeecccccccceeeeecccceEEecHh--h--------cC--Cc
Confidence 89999999999999999998 333 3468888888654321 12345677877654321110 0 00 00
Q ss_pred cHHHHHHHHHHHHHHcC-CCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 001400 936 ELETQRAFVEEVMELVE-LTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNI 1014 (1085)
Q Consensus 936 ~~~~~~~~~~~~l~~~~-l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~ 1014 (1085)
... .+.+.++.+. ...+.+.. .||+ +..+|+|+|+|||++ ||+.++..+.+.+.+.
T Consensus 105 ~~~----~~~~~i~~~~~~~~~~~~~-------~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~ 161 (354)
T 1sxj_E 105 DRI----VIQELLKEVAQMEQVDFQD-------SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKY 161 (354)
T ss_dssp CHH----HHHHHHHHHTTTTC------------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHS
T ss_pred chH----HHHHHHHHHHHhccccccc-------cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhh
Confidence 000 1223333221 11111100 2455 788999999999999 9999999999999885
Q ss_pred HHCCceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCCCchHHHHHHHH
Q 001400 1015 VNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGSKSCELIKYFE 1066 (1085)
Q Consensus 1015 ~~~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~~~~~~~~~~~~ 1066 (1085)
. .+.++|+++|+++...-...+| ...+...++.. +++.++.+
T Consensus 162 ~-~~~~~Il~t~~~~~l~~~l~sR-------~~~~~~~~~~~--~~~~~~l~ 203 (354)
T 1sxj_E 162 S-KNIRLIMVCDSMSPIIAPIKSQ-------CLLIRCPAPSD--SEISTILS 203 (354)
T ss_dssp T-TTEEEEEEESCSCSSCHHHHTT-------SEEEECCCCCH--HHHHHHHH
T ss_pred c-CCCEEEEEeCCHHHHHHHHHhh-------ceEEecCCcCH--HHHHHHHH
Confidence 3 4789999999976311111122 24556666653 34444444
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.88 E-value=9.3e-11 Score=130.86 Aligned_cols=121 Identities=13% Similarity=0.181 Sum_probs=78.7
Q ss_pred eCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEE---cCccCChh--ccc-ceEEEEccCCCCC-----CCCCHHH
Q 001400 853 RPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYI---SGYPKRQE--TFA-RISGYCEQNDIHS-----PGLTVLE 921 (1085)
Q Consensus 853 ~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i---~g~~~~~~--~~~-~~~gy~~Q~~~~~-----~~~tv~e 921 (1085)
.+|++++|+|+||||||||+++|+ ... +.+|+|.+ +|.+.+.. .+. +.+||++|.|.+. +.+|+ |
T Consensus 163 l~G~i~~l~G~sG~GKSTLln~l~-~~~--~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~-e 238 (302)
T 2yv5_A 163 LEGFICILAGPSGVGKSSILSRLT-GEE--LRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP-R 238 (302)
T ss_dssp TTTCEEEEECSTTSSHHHHHHHHH-SCC--CCCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG-G
T ss_pred ccCcEEEEECCCCCCHHHHHHHHH-Hhh--CcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH-H
Confidence 469999999999999999999999 765 46899999 88765432 122 2579999998654 67899 8
Q ss_pred HH--HHhh---h-hcCCCcccHHHHHHHHHHHHHHcCCCc-ccccccCCCCCCCCCHHHHHHHHHHHH
Q 001400 922 SL--LFSA---W-LRLPSEIELETQRAFVEEVMELVELTS-LSGALIGLPGINGLSTEQRKRLTIAVE 982 (1085)
Q Consensus 922 ~l--~~~~---~-~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~~~~~LS~Gqrqrl~iA~a 982 (1085)
++ .|.. . .+...-....+....++++++.+++.+ ..+... ..||+.++|++.|||+
T Consensus 239 ~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~-----~~ls~~~~R~~~~~~~ 301 (302)
T 2yv5_A 239 EVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYL-----KIIKVYLEEIKELCRE 301 (302)
T ss_dssp GGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHH-----HHTTCCCTTHHHHSSC
T ss_pred HHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHH-----HHHHHHHHHHHHHhcc
Confidence 88 4431 0 011100011122345788999999975 445443 3689988999999873
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=98.88 E-value=5.7e-13 Score=139.55 Aligned_cols=57 Identities=18% Similarity=0.216 Sum_probs=42.7
Q ss_pred HHH-HHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEecC
Q 001400 317 TGE-LLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSE 383 (1085)
Q Consensus 317 ia~-al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~~ 383 (1085)
.++ +++.+|++++|||+|+++|..+...|.+.|....+.. .+.| . . ..||.|+++++
T Consensus 116 ~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~~~------~~a~-~--~-~~~D~iivnd~ 173 (198)
T 1lvg_A 116 CPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTDM------ESSK-E--P-GLFDLVIINDD 173 (198)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHHHT------TGGG-S--T-TTCSEEEECSS
T ss_pred CcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH------HHhh-c--c-CCceEEEECCC
Confidence 455 6788888999999999999999999999888765532 1223 1 1 67899988764
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=98.87 E-value=4.4e-09 Score=104.50 Aligned_cols=34 Identities=21% Similarity=0.292 Sum_probs=29.7
Q ss_pred eecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCC
Q 001400 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGH 187 (1085)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~ 187 (1085)
.+|+++ +|+.++|+||||||||||+++|+|.+.+
T Consensus 29 ~~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~ 62 (149)
T 2kjq_A 29 YVLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE 62 (149)
T ss_dssp HHCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT
T ss_pred HHHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 355665 8999999999999999999999998754
|
| >1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=1.1e-10 Score=130.69 Aligned_cols=73 Identities=12% Similarity=0.162 Sum_probs=58.6
Q ss_pred eCCeEEEEeCCCCCChhHHHHHHHhhhC--CCCceeeEEEE---CCccCCCCCCCceEEEEccCCCCCCCCCHHHHHHHh
Q 001400 159 RPSRLTLLLGPPSSGKTTLLLALAGRLG--HHLQVSGKITY---NGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFA 233 (1085)
Q Consensus 159 ~~G~~~~llGp~GsGKSTLL~~L~G~l~--~~~~~~G~i~~---~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~ 233 (1085)
++|++++|+||||||||||+++|+|.+. +. +|+|.+ +|...... ..+.++++ |+..+++.+|+.+++.+.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~---~G~i~vi~~d~~~~~~~-~~~~~~~v-q~~~~~~~~~~~~~~~~~ 152 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPE---HRRVELITTDGFLHPNQ-VLKERGLM-KKKGFPESYDMHRLVKFV 152 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTT---CCCEEEEEGGGGBCCHH-HHHHHTCT-TCTTSGGGBCHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhCCC---CCeEEEEecCCccCcHH-HHHhCCEe-ecCCCCCCccHHHHHHHH
Confidence 8999999999999999999999999987 65 899999 88664211 12346788 776677889999999876
Q ss_pred hhh
Q 001400 234 GQC 236 (1085)
Q Consensus 234 ~~~ 236 (1085)
..+
T Consensus 153 ~~l 155 (308)
T 1sq5_A 153 SDL 155 (308)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
|
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} | Back alignment and structure |
|---|
Probab=98.81 E-value=2.9e-11 Score=127.53 Aligned_cols=44 Identities=30% Similarity=0.412 Sum_probs=33.7
Q ss_pred EeCCeEEEEEccCCCChhHHHhhhhCCCCC-CeeeeEEEEcCccC
Q 001400 852 FRPGVLTALVGVSGAGKTTLMDVLAGRKTG-GIIEGDIYISGYPK 895 (1085)
Q Consensus 852 i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~-~~~~G~i~i~g~~~ 895 (1085)
.++|+++||+||||||||||+++|+|...+ |...|.|.++|+..
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~~ 63 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFHL 63 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGBC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCcC
Confidence 368999999999999999999999996431 22356666666543
|
| >3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=1.6e-08 Score=116.47 Aligned_cols=62 Identities=8% Similarity=0.056 Sum_probs=43.4
Q ss_pred CCCcEeEEeCCCCCCCHHHH------------HHHHHHHHHHHhccCCEEEEEEecCh-------------------hHH
Q 001400 323 GPARVLFMDEISNGLDSSTT------------YQIIKYLKHSTRALDGTTVISLLQPA-------------------PEA 371 (1085)
Q Consensus 323 ~~p~vlllDEptsgLD~~~~------------~~i~~~l~~~~~~~~~t~ii~~~q~~-------------------~~~ 371 (1085)
.+|+++++|||++.+|+... .++++.|+++++..+.++|+ ++|.. ..+
T Consensus 272 ~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIl-v~Hv~~~~~g~~~~~g~~~~p~gg~~l 350 (400)
T 3lda_A 272 SRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVV-TNQVVAQVDGGMAFNPDPKKPIGGNIM 350 (400)
T ss_dssp SCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEE-EEEC--------------------CHH
T ss_pred cCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEE-EEeecccCCccccccCCCccCCchhHH
Confidence 57999999999999996533 56888888888776656555 45541 224
Q ss_pred HhhcCeEEEecCCe
Q 001400 372 YELFDDVILLSEGQ 385 (1085)
Q Consensus 372 ~~~~D~ii~L~~G~ 385 (1085)
.+.+|.++.|+.++
T Consensus 351 ~~~ad~vl~L~~~~ 364 (400)
T 3lda_A 351 AYSSTTRLGFKKGK 364 (400)
T ss_dssp HHHCSEEEEEEECS
T ss_pred HHhcceEEEEEecC
Confidence 56789999997653
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=6.4e-11 Score=134.38 Aligned_cols=154 Identities=19% Similarity=0.205 Sum_probs=96.0
Q ss_pred eecccceeeEeCC-------eEEEEeCCCCCChhHHHHHHHhhhCCCC-ceeeEEEECCccCCCC---CCCceEEEEccC
Q 001400 149 TILDDLSGIIRPS-------RLTLLLGPPSSGKTTLLLALAGRLGHHL-QVSGKITYNGHGFKEF---VPPRTSAYVSQQ 217 (1085)
Q Consensus 149 ~iL~~vs~~i~~G-------~~~~llGp~GsGKSTLL~~L~G~l~~~~-~~~G~i~~~G~~~~~~---~~~~~~~yv~Q~ 217 (1085)
.++++++..+++| +.++|.||||+|||||+++|+|.+.... ..+|.+..++.++... ..++.+.|+.|.
T Consensus 32 ~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~~~~~~v~~iDE~ 111 (334)
T 1in4_A 32 NVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDEI 111 (334)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHHCCTTCEEEEETG
T ss_pred HHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHHccCCCEEEEcch
Confidence 4677777777766 8899999999999999999999984321 2467666655443211 124578999998
Q ss_pred CCCCCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccc
Q 001400 218 DWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADT 297 (1085)
Q Consensus 218 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 297 (1085)
+.+.+ ++.|++.......+. +.+. . . ......++..+..++|.. +++
T Consensus 112 ~~l~~--~~~e~L~~~~~~~~~----~i~~--~----------~--------------~~~~~~i~~~l~~~~li~-at~ 158 (334)
T 1in4_A 112 HRLNK--AVEELLYSAIEDFQI----DIMI--G----------K--------------GPSAKSIRIDIQPFTLVG-ATT 158 (334)
T ss_dssp GGCCH--HHHHHHHHHHHTSCC----CC-----------------------------------------CCCEEEE-EES
T ss_pred hhcCH--HHHHHHHHHHHhccc----ceee--c----------c--------------CcccccccccCCCeEEEE-ecC
Confidence 76554 788888543221110 0000 0 0 000111333344455543 455
Q ss_pred cccCcccccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhcc
Q 001400 298 LVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRAL 356 (1085)
Q Consensus 298 ~vg~~~~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~ 356 (1085)
.+ ..||+|+|||+.++ .+||+.+..++.+.|++.++..
T Consensus 159 ~~-----~~Ls~~l~sR~~l~----------------~~Ld~~~~~~l~~iL~~~~~~~ 196 (334)
T 1in4_A 159 RS-----GLLSSPLRSRFGII----------------LELDFYTVKELKEIIKRAASLM 196 (334)
T ss_dssp CG-----GGSCHHHHTTCSEE----------------EECCCCCHHHHHHHHHHHHHHT
T ss_pred Cc-----ccCCHHHHHhcCce----------------eeCCCCCHHHHHHHHHHHHHHc
Confidence 44 35999999998654 7888888999999998877644
|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=98.78 E-value=1.1e-11 Score=142.11 Aligned_cols=171 Identities=13% Similarity=0.118 Sum_probs=112.8
Q ss_pred EEeCCeEEEEEccCCCChhHHHhhhhCCC----------CCCeeeeEEEEcCccCCh----hcccce---EEEEccCCCC
Q 001400 851 AFRPGVLTALVGVSGAGKTTLMDVLAGRK----------TGGIIEGDIYISGYPKRQ----ETFARI---SGYCEQNDIH 913 (1085)
Q Consensus 851 ~i~~Ge~~al~G~nGaGKSTLl~~l~g~~----------~~~~~~G~i~i~g~~~~~----~~~~~~---~gy~~Q~~~~ 913 (1085)
.+++|..+||+|+||||||||+++|+|.. +-.+..|.+.++|..... ....+. ..++.+.+.+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 45689999999999999999999999932 123567999998843211 011122 2467777777
Q ss_pred CCCCCHHHHH--HHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCC--CE
Q 001400 914 SPGLTVLESL--LFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANP--SI 989 (1085)
Q Consensus 914 ~~~~tv~e~l--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p--~i 989 (1085)
.+..+..|++ .|...++.. +.++..++..+ +. .+..+|++. +| ++
T Consensus 96 ~~~~s~~e~L~~~fl~~ir~~------------d~il~Vvd~~~--d~-----~i~~v~~~~------------dP~~di 144 (392)
T 1ni3_A 96 TKGASTGVGLGNAFLSHVRAV------------DAIYQVVRAFD--DA-----EIIHVEGDV------------DPIRDL 144 (392)
T ss_dssp CCCCCSSSSSCHHHHHHHTTC------------SEEEEEEECCC--TT-----CSSCCSSSS------------CHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHHH------------HHHHHHHhccc--cc-----eeeeecccc------------Ccchhh
Confidence 7776665544 333222211 11111111111 11 112245442 89 99
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHH-HHCCceEEEEecCccHHHHHhcCEEE-EEecCc-EEEEecCCCC
Q 001400 990 VFMDEPTSGLDARAAAIVMRTVRNI-VNTGRTIVCTIHQPSIDIFESFDELL-FMKRGG-ELIYAGPLGS 1056 (1085)
Q Consensus 990 lllDEPtsgLD~~~~~~i~~~l~~~-~~~g~tvi~~~H~~~~~~~~~~d~il-~l~~gG-~~~~~g~~~~ 1056 (1085)
+++|||+.++|+......++.+++. .+.|.||+ +|... ++.+.||++. +|.+ | +.++.|+..+
T Consensus 145 ~ildeel~~~D~~~~~k~~~~l~~~~~~~g~ti~--sh~~~-~~~~l~~~i~~~L~~-G~~~~~~~~~~~ 210 (392)
T 1ni3_A 145 SIIVDELLIKDAEFVEKHLEGLRKITSRGANTLE--MKAKK-EEQAIIEKVYQYLTE-TKQPIRKGDWSN 210 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCSSS--HHHHH-HHHHHHHHHHHHHHT-TCSCGGGSCCCH
T ss_pred hhchhhhHHHHHHHHHHHHHHHHHHHHhcCCccc--cccHH-HHHHHHHHHHHHhcc-CCceeecCCCCH
Confidence 9999999999999999999999987 66677764 99875 5778899998 7765 6 6777776654
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.78 E-value=5.2e-10 Score=124.82 Aligned_cols=74 Identities=16% Similarity=0.154 Sum_probs=50.6
Q ss_pred eeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEE---CCccCCCCCC---CceEEEEccCCC----------
Q 001400 156 GIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITY---NGHGFKEFVP---PRTSAYVSQQDW---------- 219 (1085)
Q Consensus 156 ~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~---~G~~~~~~~~---~~~~~yv~Q~d~---------- 219 (1085)
+.+.+|++++|+|||||||||||++|+|+..+. +|+|.+ +|+++..... .+.++||+|++.
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~---~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~ 240 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLKLR---VSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIE 240 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC----------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSC
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhccccccc---ccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCC
Confidence 345679999999999999999999999998876 999999 8887654321 135799999874
Q ss_pred ------CCCCCCHHHHHHHh
Q 001400 220 ------QVAEMTVRETLDFA 233 (1085)
Q Consensus 220 ------~~~~lTV~E~l~f~ 233 (1085)
++|++|+ ||+.|+
T Consensus 241 ~~~~~~l~~~~~~-~n~~~~ 259 (301)
T 1u0l_A 241 PEELKHYFKEFGD-KQCFFS 259 (301)
T ss_dssp HHHHGGGSTTSSS-CCCSST
T ss_pred HHHHHHHHHhccc-ccCcCC
Confidence 4788888 888774
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=98.77 E-value=6.2e-09 Score=118.83 Aligned_cols=135 Identities=16% Similarity=0.189 Sum_probs=67.7
Q ss_pred EEEeCCCCCChhHHHHHHHh-hhCCCCceeeEEEECCccCCCCC-CCceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCC
Q 001400 164 TLLLGPPSSGKTTLLLALAG-RLGHHLQVSGKITYNGHGFKEFV-PPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGS 241 (1085)
Q Consensus 164 ~~llGp~GsGKSTLL~~L~G-~l~~~~~~~G~i~~~G~~~~~~~-~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~ 241 (1085)
++|.||||+|||||+++|+| .+.+. .|.+.++|.+..... ....++|++|.+.+....+- .+...
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~~~---~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~ 105 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFGPG---VYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSD----------MGNND 105 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSCTT---CCC------------------CCEECSSEEEECCC--------------CC
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCC---CCeEEecceeecccccccceeeeecccceEEecHhh----------cCCcc
Confidence 89999999999999999999 45554 799999987654321 23567888887643111100 00000
Q ss_pred chhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCcccccCchhhhhHHHHHHHH
Q 001400 242 KYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELL 321 (1085)
Q Consensus 242 ~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqkqRvsia~al 321 (1085)
+ ..++..++.+.-....+.. . .+|| +
T Consensus 106 ~-------------------------------------~~~~~~i~~~~~~~~~~~~-----~-~ls~-----------l 131 (354)
T 1sxj_E 106 R-------------------------------------IVIQELLKEVAQMEQVDFQ-----D-SKDG-----------L 131 (354)
T ss_dssp H-------------------------------------HHHHHHHHHHTTTTC---------------------------
T ss_pred h-------------------------------------HHHHHHHHHHHHhcccccc-----c-cccc-----------c
Confidence 0 0011112211111000111 0 3566 7
Q ss_pred hCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChh
Q 001400 322 VGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAP 369 (1085)
Q Consensus 322 ~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~ 369 (1085)
.++|+++++|||++ ||..+...+.+.+.+.. .++++|.++|..+
T Consensus 132 ~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~---~~~~~Il~t~~~~ 175 (354)
T 1sxj_E 132 AHRYKCVIINEANS-LTKDAQAALRRTMEKYS---KNIRLIMVCDSMS 175 (354)
T ss_dssp --CCEEEEEECTTS-SCHHHHHHHHHHHHHST---TTEEEEEEESCSC
T ss_pred CCCCeEEEEeCccc-cCHHHHHHHHHHHHhhc---CCCEEEEEeCCHH
Confidence 88999999999999 99999999999998753 2455555556543
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.74 E-value=1.5e-09 Score=120.47 Aligned_cols=72 Identities=22% Similarity=0.262 Sum_probs=44.5
Q ss_pred eeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEE---CCccCCCCCC-Cce-EEEEccCCCCCC----CCCH
Q 001400 156 GIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITY---NGHGFKEFVP-PRT-SAYVSQQDWQVA----EMTV 226 (1085)
Q Consensus 156 ~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~---~G~~~~~~~~-~~~-~~yv~Q~d~~~~----~lTV 226 (1085)
+.+.+|++++|+||||||||||+|+|+|...+. +|+|.+ +|...+.... .+. .+|++|.+.+.. .+|+
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~---~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~ 244 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLR---TNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE 244 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC----------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhccccccc---ccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH
Confidence 556789999999999999999999999988765 899998 8876543221 112 699999987654 6899
Q ss_pred HHHHH
Q 001400 227 RETLD 231 (1085)
Q Consensus 227 ~E~l~ 231 (1085)
|+|.
T Consensus 245 -e~l~ 248 (307)
T 1t9h_A 245 -EELG 248 (307)
T ss_dssp -HHHG
T ss_pred -HHHH
Confidence 8883
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=98.71 E-value=4.3e-12 Score=132.85 Aligned_cols=56 Identities=11% Similarity=0.205 Sum_probs=42.3
Q ss_pred HHH-HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEe
Q 001400 979 IAV-ELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMK 1043 (1085)
Q Consensus 979 iA~-aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~ 1043 (1085)
.|+ +++.+|++++|||+|+++|..+.+.|.+.|.+..+. +.++|.+ ..||.+++++
T Consensus 116 ~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~~----~~~a~~~-----~~~D~iivnd 172 (198)
T 1lvg_A 116 CPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTD----MESSKEP-----GLFDLVIIND 172 (198)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHHH----TTGGGST-----TTCSEEEECS
T ss_pred CcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHH----HHHhhcc-----CCceEEEECC
Confidence 455 678888888999999999999999999998886532 2345621 4689887765
|
| >1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* | Back alignment and structure |
|---|
Probab=98.70 E-value=1.2e-10 Score=130.43 Aligned_cols=75 Identities=15% Similarity=0.170 Sum_probs=57.3
Q ss_pred eCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEE---cCccCChhcccceEEEEccCCCCCCCCCHHHHHHHhhhh
Q 001400 853 RPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYI---SGYPKRQETFARISGYCEQNDIHSPGLTVLESLLFSAWL 929 (1085)
Q Consensus 853 ~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i---~g~~~~~~~~~~~~gy~~Q~~~~~~~~tv~e~l~~~~~~ 929 (1085)
++|+++||+|+||||||||+++|+|.....+..|+|.+ ||+..... .++.+|++ |...+.+.+++.+++.+...+
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~~~~~~-~~~~~~~v-q~~~~~~~~~~~~~~~~~~~l 155 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFLHPNQ-VLKERGLM-KKKGFPESYDMHRLVKFVSDL 155 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBCCHH-HHHHHTCT-TCTTSGGGBCHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCccCcHH-HHHhCCEe-ecCCCCCCccHHHHHHHHHHH
Confidence 89999999999999999999999995331124688999 98875432 23456788 777777788999998765443
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=98.65 E-value=3e-08 Score=110.27 Aligned_cols=114 Identities=17% Similarity=0.200 Sum_probs=78.5
Q ss_pred ceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCCCceEEEEccCCCCCCCCCHHHHHHHh
Q 001400 154 LSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFA 233 (1085)
Q Consensus 154 vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~ 233 (1085)
+++..++|++++|+|||||||||++..|++.+.+. .|+|.+.+.+.. |. ...|.
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~---g~kV~lv~~D~~-----r~--------------~a~eq---- 150 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDE---GKSVVLAAADTF-----RA--------------AAIEQ---- 150 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEEEECTT-----CH--------------HHHHH----
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhc---CCEEEEEccccc-----cH--------------HHHHH----
Confidence 45667899999999999999999999999998653 567766543210 00 00111
Q ss_pred hhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCcccccCchhhhh
Q 001400 234 GQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKK 313 (1085)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqkq 313 (1085)
....++.+|++. ....|||+.+
T Consensus 151 ------------------------------------------------L~~~~~~~gl~~----------~~~~s~~~~~ 172 (306)
T 1vma_A 151 ------------------------------------------------LKIWGERVGATV----------ISHSEGADPA 172 (306)
T ss_dssp ------------------------------------------------HHHHHHHHTCEE----------ECCSTTCCHH
T ss_pred ------------------------------------------------HHHHHHHcCCcE----------EecCCccCHH
Confidence 112233455542 1247899999
Q ss_pred HH---HHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 001400 314 RL---TTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTR 354 (1085)
Q Consensus 314 Rv---sia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~ 354 (1085)
++ ++++++..+|+++++|+|.. ......+++.|+.+.+
T Consensus 173 ~v~~~al~~a~~~~~dvvIiDtpg~---~~~~~~l~~eL~~l~~ 213 (306)
T 1vma_A 173 AVAFDAVAHALARNKDVVIIDTAGR---LHTKKNLMEELRKVHR 213 (306)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEECCC---CSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCc---hhhHHHHHHHHHHHHH
Confidence 99 89999999999999999974 3444556666665543
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.64 E-value=1.8e-11 Score=134.78 Aligned_cols=142 Identities=14% Similarity=0.125 Sum_probs=92.4
Q ss_pred eEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCChh---cccceEEEEccCC-CCCCCC
Q 001400 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE---TFARISGYCEQND-IHSPGL 917 (1085)
Q Consensus 842 ~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~---~~~~~~gy~~Q~~-~~~~~~ 917 (1085)
..+++++++.+++| ++|+||||+|||||+++|+|... .|.|.++|.++... ...+.+++++|.. ...|.+
T Consensus 33 ~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~----~~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i 106 (274)
T 2x8a_A 33 PDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESG----LNFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCV 106 (274)
T ss_dssp HHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTT----CEEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEE
T ss_pred HHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcC----CCEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCe
Confidence 34677888999999 99999999999999999999654 26899999765321 2234466777753 344555
Q ss_pred CHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCC
Q 001400 918 TVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTS 997 (1085)
Q Consensus 918 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEPts 997 (1085)
++.|++.+.+..+.. . . .. ......+... ..|||||+||+.|++|+..+|++| |||+.
T Consensus 107 ~~~Deid~~~~~r~~-----~-~---~~------~~~~~~~~~l-----~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~ 164 (274)
T 2x8a_A 107 IFFDEVDALCPRRSD-----R-E---TG------ASVRVVNQLL-----TEMDGLEARQQVFIMAATNRPDII--DPAIL 164 (274)
T ss_dssp EEEETCTTTCC------------------------CTTHHHHHH-----HHHHTCCSTTCEEEEEEESCGGGS--CHHHH
T ss_pred EeeehhhhhhcccCC-----C-c---ch------HHHHHHHHHH-----HhhhcccccCCEEEEeecCChhhC--CHhhc
Confidence 666665432211100 0 0 00 0111222222 359999999999999999999975 99874
Q ss_pred ------------CCCHHHHHHHHHHH
Q 001400 998 ------------GLDARAAAIVMRTV 1011 (1085)
Q Consensus 998 ------------gLD~~~~~~i~~~l 1011 (1085)
--|...+..|++.+
T Consensus 165 r~gRfd~~i~~~~P~~~~r~~il~~~ 190 (274)
T 2x8a_A 165 RPGRLDKTLFVGLPPPADRLAILKTI 190 (274)
T ss_dssp STTSSCEEEECCSCCHHHHHHHHHHH
T ss_pred CcccCCeEEEeCCcCHHHHHHHHHHH
Confidence 23666666666554
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.62 E-value=1.9e-09 Score=119.51 Aligned_cols=117 Identities=18% Similarity=0.219 Sum_probs=63.9
Q ss_pred EEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEE---cCccCChh-cccce-EEEEccCCCCCC----CCCHHH
Q 001400 851 AFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYI---SGYPKRQE-TFARI-SGYCEQNDIHSP----GLTVLE 921 (1085)
Q Consensus 851 ~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i---~g~~~~~~-~~~~~-~gy~~Q~~~~~~----~~tv~e 921 (1085)
++.+|++++|+|+||||||||+++|+|... +..|+|.+ +|...+.. ...+. .||++|.|.+.+ .+|+ |
T Consensus 169 ~~~~G~~~~lvG~sG~GKSTLln~L~g~~~--~~~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~-e 245 (307)
T 1t9h_A 169 PHFQDKTTVFAGQSGVGKSSLLNAISPELG--LRTNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE-E 245 (307)
T ss_dssp GGGTTSEEEEEESHHHHHHHHHHHHCC---------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH-H
T ss_pred hhcCCCEEEEECCCCCCHHHHHHHhccccc--ccccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH-H
Confidence 345799999999999999999999999765 45799988 77654321 12222 799999987764 6789 8
Q ss_pred HHH--Hhhh--h----cCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHH
Q 001400 922 SLL--FSAW--L----RLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRK 975 (1085)
Q Consensus 922 ~l~--~~~~--~----~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrq 975 (1085)
++. |... + +...-....+....++++++.+++.+.+.... ..|+.|++|
T Consensus 246 ~l~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~r~~~y-----~~lls~~~~ 302 (307)
T 1t9h_A 246 ELGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQYRYDHY-----VEFMTEIKD 302 (307)
T ss_dssp HHGGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHH-----HHHHHHHHT
T ss_pred HHHHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChHHHHHHH-----HHHHHHHhh
Confidence 883 3211 1 11100001112245788999999876432221 146667766
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* | Back alignment and structure |
|---|
Probab=98.62 E-value=1.7e-10 Score=130.82 Aligned_cols=152 Identities=15% Similarity=0.086 Sum_probs=90.1
Q ss_pred CCeEEeeeeeEEEeCC-------eEEEEEccCCCChhHHHhhhhCCCCC--CeeeeEEEEcCccCCh---hcccceEEEE
Q 001400 840 DRLQLLVNVTGAFRPG-------VLTALVGVSGAGKTTLMDVLAGRKTG--GIIEGDIYISGYPKRQ---ETFARISGYC 907 (1085)
Q Consensus 840 ~~~~~L~~vs~~i~~G-------e~~al~G~nGaGKSTLl~~l~g~~~~--~~~~G~i~i~g~~~~~---~~~~~~~gy~ 907 (1085)
++..+++++++.+++| +.++|+||||+|||||+++|+|.... .+.+|.+..++.+... ....+.++|+
T Consensus 29 g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~~~~~~v~~i 108 (334)
T 1in4_A 29 GQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFI 108 (334)
T ss_dssp SCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHHCCTTCEEEE
T ss_pred CcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHHccCCCEEEE
Confidence 4455777888888776 88999999999999999999985411 1345555544433221 1124568999
Q ss_pred ccCCCCCCCCCHHHHHHHhhhhcCCCcc--cHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhc
Q 001400 908 EQNDIHSPGLTVLESLLFSAWLRLPSEI--ELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVA 985 (1085)
Q Consensus 908 ~Q~~~~~~~~tv~e~l~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~ 985 (1085)
.|.+.+.+ ++.|++........ .+. ........+++.++.+++.. .... +..||+|+|||+.++
T Consensus 109 DE~~~l~~--~~~e~L~~~~~~~~-~~i~~~~~~~~~~i~~~l~~~~li~-at~~-----~~~Ls~~l~sR~~l~----- 174 (334)
T 1in4_A 109 DEIHRLNK--AVEELLYSAIEDFQ-IDIMIGKGPSAKSIRIDIQPFTLVG-ATTR-----SGLLSSPLRSRFGII----- 174 (334)
T ss_dssp ETGGGCCH--HHHHHHHHHHHTSC-CCC---------------CCCEEEE-EESC-----GGGSCHHHHTTCSEE-----
T ss_pred cchhhcCH--HHHHHHHHHHHhcc-cceeeccCcccccccccCCCeEEEE-ecCC-----cccCCHHHHHhcCce-----
Confidence 99877654 78888753321111 010 01111122333333333322 1211 246999999998654
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 001400 986 NPSIVFMDEPTSGLDARAAAIVMRTVRNIVN 1016 (1085)
Q Consensus 986 ~p~illlDEPtsgLD~~~~~~i~~~l~~~~~ 1016 (1085)
.+||+.+...+.++|++.++
T Consensus 175 -----------~~Ld~~~~~~l~~iL~~~~~ 194 (334)
T 1in4_A 175 -----------LELDFYTVKELKEIIKRAAS 194 (334)
T ss_dssp -----------EECCCCCHHHHHHHHHHHHH
T ss_pred -----------eeCCCCCHHHHHHHHHHHHH
Confidence 77888888888888888764
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=98.61 E-value=1.1e-08 Score=119.71 Aligned_cols=53 Identities=13% Similarity=0.018 Sum_probs=48.9
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCC
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKE 204 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~ 204 (1085)
..+|+|+|+.|++ ++++|+|||||||||||++|+|.++|. +|+|.++|.++..
T Consensus 17 ~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~~~~ 69 (483)
T 3euj_A 17 WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPD---LTLLNFRNTTEAG 69 (483)
T ss_dssp ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCC---TTTCCCCCTTSCS
T ss_pred cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCC---CCEEEECCEEccc
Confidence 4589999999999 999999999999999999999999886 8999999987654
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=98.60 E-value=1.9e-08 Score=111.88 Aligned_cols=112 Identities=20% Similarity=0.223 Sum_probs=73.5
Q ss_pred eeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCChhcccceEEEEccCCCCCCCCCHHHHHHHhh
Q 001400 848 VTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLESLLFSA 927 (1085)
Q Consensus 848 vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gy~~Q~~~~~~~~tv~e~l~~~~ 927 (1085)
+++..++|++++|+|+|||||||++..|++... ...|+|.+.+.+.... ...|.
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~--~~g~kV~lv~~D~~r~-------------------~a~eq----- 150 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFV--DEGKSVVLAAADTFRA-------------------AAIEQ----- 150 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHH--HTTCCEEEEEECTTCH-------------------HHHHH-----
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHH--hcCCEEEEEccccccH-------------------HHHHH-----
Confidence 344567899999999999999999999998643 1235666655432100 00111
Q ss_pred hhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHH---HHHHHHhcCCCEEEEeCCCCCCCHHHH
Q 001400 928 WLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRL---TIAVELVANPSIVFMDEPTSGLDARAA 1004 (1085)
Q Consensus 928 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl---~iA~aL~~~p~illlDEPtsgLD~~~~ 1004 (1085)
...+.+.+++.-+ ...|+|+.+++ ++++++..+|+++|+|||.. ....
T Consensus 151 ----------------L~~~~~~~gl~~~----------~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~---~~~~ 201 (306)
T 1vma_A 151 ----------------LKIWGERVGATVI----------SHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR---LHTK 201 (306)
T ss_dssp ----------------HHHHHHHHTCEEE----------CCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC---CSCH
T ss_pred ----------------HHHHHHHcCCcEE----------ecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc---hhhH
Confidence 1223334444321 24689999999 89999999999999999974 3344
Q ss_pred HHHHHHHHHH
Q 001400 1005 AIVMRTVRNI 1014 (1085)
Q Consensus 1005 ~~i~~~l~~~ 1014 (1085)
..+++.++++
T Consensus 202 ~~l~~eL~~l 211 (306)
T 1vma_A 202 KNLMEELRKV 211 (306)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4555555544
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.60 E-value=4.4e-09 Score=113.34 Aligned_cols=68 Identities=13% Similarity=0.202 Sum_probs=46.1
Q ss_pred HHHHHHHh--cCCCEEEEeCCCCCC--CHHHHHHHHHHHHHHH-HCCceEEEEecCccHH-------HHHhcCEEEEEec
Q 001400 977 LTIAVELV--ANPSIVFMDEPTSGL--DARAAAIVMRTVRNIV-NTGRTIVCTIHQPSID-------IFESFDELLFMKR 1044 (1085)
Q Consensus 977 l~iA~aL~--~~p~illlDEPtsgL--D~~~~~~i~~~l~~~~-~~g~tvi~~~H~~~~~-------~~~~~d~il~l~~ 1044 (1085)
+..++.++ .+|+++++|+|++.+ |+......+..+.+++ +.|.|||+++|..... +...+|.++.|.+
T Consensus 117 ~~~i~~~~~~~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 117 IEVLRQAIRDINAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HHHHHHHHHHHTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred HHHHHHHHHHhCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 33344443 579999999999988 5544444555555554 5699999999976421 3466899999974
|
| >2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A | Back alignment and structure |
|---|
Probab=98.59 E-value=7.9e-08 Score=113.52 Aligned_cols=179 Identities=11% Similarity=0.119 Sum_probs=103.7
Q ss_pred EEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeee-EEEEcCccCChhcccce-EEEEccCCCCCCCCCHH
Q 001400 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEG-DIYISGYPKRQETFARI-SGYCEQNDIHSPGLTVL 920 (1085)
Q Consensus 843 ~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G-~i~i~g~~~~~~~~~~~-~gy~~Q~~~~~~~~tv~ 920 (1085)
..|+++++-+++|+++.|.|++|+|||||+..+++.... ..| .+.+.+.........++ .+... +...
T Consensus 191 ~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~--~~g~~Vl~~s~E~s~~~l~~r~~~~~~-------~~~~- 260 (454)
T 2r6a_A 191 TELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVAT--KTNENVAIFSLEMSAQQLVMRMLCAEG-------NINA- 260 (454)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHH--HSSCCEEEEESSSCHHHHHHHHHHHHH-------TCCH-
T ss_pred HHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHH--hCCCcEEEEECCCCHHHHHHHHHHHHc-------CCCH-
Confidence 346677777999999999999999999999999874320 112 23222221111110000 00000 0000
Q ss_pred HHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHh--cCCCEEEEeCCCCC
Q 001400 921 ESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELV--ANPSIVFMDEPTSG 998 (1085)
Q Consensus 921 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~--~~p~illlDEPtsg 998 (1085)
+.+ +.. ... ......+.++++.++..++.-. . ..++|.+|.+ ..++.++ .+|+++++|+++.-
T Consensus 261 ~~l------~~g-~l~-~~~~~~~~~a~~~l~~~~l~i~---d--~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~ 325 (454)
T 2r6a_A 261 QNL------RTG-KLT-PEDWGKLTMAMGSLSNAGIYID---D--TPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLI 325 (454)
T ss_dssp HHH------HTS-CCC-HHHHHHHHHHHHHHHSSCEEEE---C--CTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGS
T ss_pred HHH------hcC-CCC-HHHHHHHHHHHHHHhcCCEEEE---C--CCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHh
Confidence 001 100 111 1122334455555543332211 1 1368999886 5667776 67999999999987
Q ss_pred CC--------HHHHHHHHHHHHHHHHC-CceEEEEec---------C--ccH-------HHHHhcCEEEEEecCc
Q 001400 999 LD--------ARAAAIVMRTVRNIVNT-GRTIVCTIH---------Q--PSI-------DIFESFDELLFMKRGG 1046 (1085)
Q Consensus 999 LD--------~~~~~~i~~~l~~~~~~-g~tvi~~~H---------~--~~~-------~~~~~~d~il~l~~gG 1046 (1085)
.+ ......+.+.|+.++++ |.+||+++| + |.. .+...+|.+++|.++.
T Consensus 326 ~~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~ 400 (454)
T 2r6a_A 326 QGSGRSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDD 400 (454)
T ss_dssp CCSCC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEETT
T ss_pred ccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEeccc
Confidence 73 33446777888888754 999999999 2 431 2455799999998653
|
| >3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=98.58 E-value=4.9e-09 Score=128.40 Aligned_cols=159 Identities=18% Similarity=0.172 Sum_probs=100.1
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCCCceEEEEccCC---------
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQD--------- 218 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~~~~~~yv~Q~d--------- 218 (1085)
..++++++..+++|+.++|+||||+|||||+++|+|.+++. .-|.+.+++.+.+.. ...++|+++..
T Consensus 47 ~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~--~~~~~~~~~~~~~~~--~p~i~~~p~g~~~~~~e~~~ 122 (604)
T 3k1j_A 47 EHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTE--TLEDILVFPNPEDEN--MPRIKTVPACQGRRIVEKYR 122 (604)
T ss_dssp HHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCS--SCEEEEEECCTTCTT--SCEEEEEETTHHHHHHHHHH
T ss_pred hhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcc--cCCeEEEeCCccccc--CCcEEEEecchHHHHHHHHH
Confidence 35889999999999999999999999999999999998764 248899988776543 34588887753
Q ss_pred -------------CCCCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHH
Q 001400 219 -------------WQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYI 285 (1085)
Q Consensus 219 -------------~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 285 (1085)
+.+..+++.+|+... .+...+ .+-+ .. . ....
T Consensus 123 ~~~~~~~~~r~~~~~~~~~~~~~nl~v~-~~~~~~--------------------~~~v---------~~--~---~~~~ 167 (604)
T 3k1j_A 123 EKAKSQESVKSSNMRLKSTVLVPKLLVD-NCGRTK--------------------APFI---------DA--T---GAHA 167 (604)
T ss_dssp HHHHHHTCC-----------CCCEEEEC-CTTCSS--------------------CCEE---------EC--T---TCCH
T ss_pred Hhhccchhhhhhcccccccccccceeec-cccCCC--------------------CCEE---------Ec--C---CCCH
Confidence 222233333332111 000000 0000 00 0 0001
Q ss_pred HHHhCCcccccccccCcccccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHH
Q 001400 286 MKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKH 351 (1085)
Q Consensus 286 l~~lgL~~~~dt~vg~~~~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~ 351 (1085)
-+.+|.-.... ....++|+|++|++..+.....++.+||+||+.. |++.....+.+.|.+
T Consensus 168 ~~L~G~~~~~~-----~~~g~~~~g~~~~i~~g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 168 GALLGDVRHDP-----FQSGGLGTPAHERVEPGMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp HHHHCEECCCC-----C----CCCCGGGGEECCHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred HhcCceEEech-----hhcCCccccccccccCceeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 11223211111 1124699999999999999999999999999998 898888877777764
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.58 E-value=3.1e-07 Score=98.76 Aligned_cols=60 Identities=18% Similarity=0.145 Sum_probs=42.4
Q ss_pred CCCcEeEEeCCCCCC--CHHHHHHHHHHHHHHHhccCCEEEEEEecChhH--------HHhhcCeEEEecC
Q 001400 323 GPARVLFMDEISNGL--DSSTTYQIIKYLKHSTRALDGTTVISLLQPAPE--------AYELFDDVILLSE 383 (1085)
Q Consensus 323 ~~p~vlllDEptsgL--D~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~--------~~~~~D~ii~L~~ 383 (1085)
.+|+++++|+|++.+ |.....+++..+.+.++..+.++++ ++|...+ +.+.+|.|+.|+.
T Consensus 127 ~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~-~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 127 INAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIF-VSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEE-EEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred hCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEE-EecCCCCcccccccccceeEEEEEEEEE
Confidence 479999999999988 6655566667777776665555555 5555544 4678899999964
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=98.57 E-value=1.1e-07 Score=105.31 Aligned_cols=142 Identities=14% Similarity=0.149 Sum_probs=87.7
Q ss_pred eCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCCCceEEEEccCCCCCCCCCHHHHHHHhhhhcC
Q 001400 159 RPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQG 238 (1085)
Q Consensus 159 ~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~ 238 (1085)
++|++++++|||||||||++..|++.+.+. +| +.+.++.++.. ..++.|.+...+.
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~---~G---------------~~V~lv~~D~~---r~~a~eqL~~~~~--- 158 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLE---KH---------------KKIAFITTDTY---RIAAVEQLKTYAE--- 158 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHT---TC---------------CCEEEEECCCS---STTHHHHHHHHHT---
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHh---cC---------------CEEEEEecCcc---cchHHHHHHHHHH---
Confidence 579999999999999999999999998642 34 24667776652 3456666543221
Q ss_pred CCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCcccccCchhhhhHHHHH
Q 001400 239 VGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTG 318 (1085)
Q Consensus 239 ~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqkqRvsia 318 (1085)
.+|++.. . ..+ ++.-+.+++
T Consensus 159 -------------------------------------------------~~gl~~~----~------~~~-~~~l~~al~ 178 (296)
T 2px0_A 159 -------------------------------------------------LLQAPLE----V------CYT-KEEFQQAKE 178 (296)
T ss_dssp -------------------------------------------------TTTCCCC----B------CSS-HHHHHHHHH
T ss_pred -------------------------------------------------hcCCCeE----e------cCC-HHHHHHHHH
Confidence 1122110 0 011 222355555
Q ss_pred HHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhc--cCCEEEEE-EecChhHHHhhcCeEEEecCCeEEEe
Q 001400 319 ELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRA--LDGTTVIS-LLQPAPEAYELFDDVILLSEGQIVYQ 389 (1085)
Q Consensus 319 ~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~--~~~t~ii~-~~q~~~~~~~~~D~ii~L~~G~iv~~ 389 (1085)
+ +.+++++++| |+|+|+.....+.+..+ .... ...++++. .+|...++.+.+|++..+..+.++..
T Consensus 179 ~--~~~~dlvIiD--T~G~~~~~~~~~~el~~-~l~~~~~~~~~lVl~at~~~~~~~~~~~~~~~l~~~giVlt 247 (296)
T 2px0_A 179 L--FSEYDHVFVD--TAGRNFKDPQYIDELKE-TIPFESSIQSFLVLSATAKYEDMKHIVKRFSSVPVNQYIFT 247 (296)
T ss_dssp H--GGGSSEEEEE--CCCCCTTSHHHHHHHHH-HSCCCTTEEEEEEEETTBCHHHHHHHTTTTSSSCCCEEEEE
T ss_pred H--hcCCCEEEEe--CCCCChhhHHHHHHHHH-HHhhcCCCeEEEEEECCCCHHHHHHHHHHHhcCCCCEEEEe
Confidence 4 4899999999 99999876654444333 2211 11223332 35666778787887766777777763
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.55 E-value=1.9e-08 Score=112.20 Aligned_cols=99 Identities=17% Similarity=0.241 Sum_probs=62.4
Q ss_pred EeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEE---cCccCChh--cc-cceEEEEccCCC-------------
Q 001400 852 FRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYI---SGYPKRQE--TF-ARISGYCEQNDI------------- 912 (1085)
Q Consensus 852 i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i---~g~~~~~~--~~-~~~~gy~~Q~~~------------- 912 (1085)
+.+|++++|+||||||||||+++|+|... +..|+|.+ +|.++... .+ .+.+||++|.+.
T Consensus 166 ~l~geiv~l~G~sG~GKSTll~~l~g~~~--~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~~ 243 (301)
T 1u0l_A 166 YLKGKISTMAGLSGVGKSSLLNAINPGLK--LRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEE 243 (301)
T ss_dssp HHSSSEEEEECSTTSSHHHHHHHHSTTCC--CC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHHH
T ss_pred HhcCCeEEEECCCCCcHHHHHHHhccccc--ccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHHH
Confidence 34699999999999999999999999876 46899999 88765421 11 235799999975
Q ss_pred ---CCCCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCC-ccccc
Q 001400 913 ---HSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELT-SLSGA 959 (1085)
Q Consensus 913 ---~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~ 959 (1085)
++|.+|+ ||+.|... ... .+....+.++++.++|. +..+.
T Consensus 244 ~~~l~~~~~~-~n~~~~~~-~~~-----~e~~~~v~~~l~~~~L~~~~~~~ 287 (301)
T 1u0l_A 244 LKHYFKEFGD-KQCFFSDC-NHV-----DEPECGVKEAVENGEIAESRYEN 287 (301)
T ss_dssp HGGGSTTSSS-CCCSSTTC-CSS-----SCSSCHHHHHHHHTSSCHHHHHH
T ss_pred HHHHHHhccc-ccCcCCCC-cCC-----CCCCcHHHHHHHcCCCCHHHHHH
Confidence 4678888 88877531 111 11224578899999984 44443
|
| >1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A* | Back alignment and structure |
|---|
Probab=98.54 E-value=1.8e-07 Score=103.73 Aligned_cols=129 Identities=18% Similarity=0.097 Sum_probs=85.1
Q ss_pred eeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCChhcccceEEEEccCCCCCCCCCHHHHHHH
Q 001400 846 VNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLESLLF 925 (1085)
Q Consensus 846 ~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gy~~Q~~~~~~~~tv~e~l~~ 925 (1085)
++++++ +|++++++|+||+||||++..|++... ...|++.+.+.+..... + .+.+
T Consensus 91 ~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~--~~~~~v~l~~~d~~~~~------------------~-~~ql-- 145 (295)
T 1ls1_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYK--GKGRRPLLVAADTQRPA------------------A-REQL-- 145 (295)
T ss_dssp CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHH--HTTCCEEEEECCSSCHH------------------H-HHHH--
T ss_pred ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHH--HcCCeEEEecCCcccHh------------------H-HHHH--
Confidence 477887 899999999999999999999999643 22467777665432100 0 0000
Q ss_pred hhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCC-CCCCCHHHH
Q 001400 926 SAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEP-TSGLDARAA 1004 (1085)
Q Consensus 926 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEP-tsgLD~~~~ 1004 (1085)
..+.+..++.-+... ...+-.+.+|.+|+.+...+++++|+||| ++++|....
T Consensus 146 -------------------~~~~~~~~l~~~~~~-------~~~~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~ 199 (295)
T 1ls1_A 146 -------------------RLLGEKVGVPVLEVM-------DGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLM 199 (295)
T ss_dssp -------------------HHHHHHHTCCEEECC-------TTCCHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHH
T ss_pred -------------------HHhcccCCeEEEEcC-------CCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHH
Confidence 011223344322110 11244456788999988899999999999 999999888
Q ss_pred HHHHHHHHHHHHCCceEEEEec
Q 001400 1005 AIVMRTVRNIVNTGRTIVCTIH 1026 (1085)
Q Consensus 1005 ~~i~~~l~~~~~~g~tvi~~~H 1026 (1085)
..+.+..+.+. ...+++++..
T Consensus 200 ~~l~~~~~~~~-~~~~~lv~~~ 220 (295)
T 1ls1_A 200 GELARLKEVLG-PDEVLLVLDA 220 (295)
T ss_dssp HHHHHHHHHHC-CSEEEEEEEG
T ss_pred HHHHHHhhhcC-CCEEEEEEeC
Confidence 88888777653 4555555543
|
| >3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=98.52 E-value=7.3e-09 Score=108.38 Aligned_cols=71 Identities=18% Similarity=0.182 Sum_probs=49.6
Q ss_pred eeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCC---CCceEEEEccCCCCCCCCCHHHHHH
Q 001400 155 SGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV---PPRTSAYVSQQDWQVAEMTVRETLD 231 (1085)
Q Consensus 155 s~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~---~~~~~~yv~Q~d~~~~~lTV~E~l~ 231 (1085)
|+.+++|++++|+||||||||||+++|+|.++ .+.+++....... ....++|++|++..++.+++.+++.
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA-------EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFL 73 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS-------SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEE
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC-------CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcEE
Confidence 56778999999999999999999999999863 2455554433221 2345789999887777777766654
Q ss_pred H
Q 001400 232 F 232 (1085)
Q Consensus 232 f 232 (1085)
+
T Consensus 74 ~ 74 (205)
T 3tr0_A 74 E 74 (205)
T ss_dssp E
T ss_pred e
Confidence 3
|
| >2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A | Back alignment and structure |
|---|
Probab=98.51 E-value=2.9e-07 Score=108.74 Aligned_cols=183 Identities=20% Similarity=0.194 Sum_probs=109.0
Q ss_pred ceeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCCCceEEEEccCCCCCCCCCH
Q 001400 147 KLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTV 226 (1085)
Q Consensus 147 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV 226 (1085)
....|+++.+-+++|++++|.|+||+|||||+..+++...+. .| ..+.|++-+ ++.
T Consensus 189 G~~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~---~g---------------~~Vl~~s~E------~s~ 244 (454)
T 2r6a_A 189 GFTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATK---TN---------------ENVAIFSLE------MSA 244 (454)
T ss_dssp SCHHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHH---SS---------------CCEEEEESS------SCH
T ss_pred CcHHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHh---CC---------------CcEEEEECC------CCH
Confidence 356799999999999999999999999999999999875321 22 134555432 343
Q ss_pred HHHHHHh-hhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCcccc
Q 001400 227 RETLDFA-GQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLK 305 (1085)
Q Consensus 227 ~E~l~f~-~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 305 (1085)
.+...-. +...+.. .. .+ ..+...+.+.+ ++...++.++..+.. +-+ ..
T Consensus 245 ~~l~~r~~~~~~~~~--~~---~l-----~~g~l~~~~~~---------------~~~~a~~~l~~~~l~---i~d--~~ 294 (454)
T 2r6a_A 245 QQLVMRMLCAEGNIN--AQ---NL-----RTGKLTPEDWG---------------KLTMAMGSLSNAGIY---IDD--TP 294 (454)
T ss_dssp HHHHHHHHHHHHTCC--HH---HH-----HTSCCCHHHHH---------------HHHHHHHHHHSSCEE---EEC--CT
T ss_pred HHHHHHHHHHHcCCC--HH---HH-----hcCCCCHHHHH---------------HHHHHHHHHhcCCEE---EEC--CC
Confidence 3322110 0000100 00 00 00111111111 233334444332221 111 23
Q ss_pred cCchhhhhHHHHHHHHh--CCCcEeEEeCCCCCCCH--------HHHHHHHHHHHHHHhccCCEEEEEEec---------
Q 001400 306 GISGGQKKRLTTGELLV--GPARVLFMDEISNGLDS--------STTYQIIKYLKHSTRALDGTTVISLLQ--------- 366 (1085)
Q Consensus 306 ~LSGGqkqRvsia~al~--~~p~vlllDEptsgLD~--------~~~~~i~~~l~~~~~~~~~t~ii~~~q--------- 366 (1085)
++|++|.+ +.++.+. .+|+++++|+++...++ .....+.+.|+.+++..+.++|+ ++|
T Consensus 295 ~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~-~sql~r~~e~~~ 371 (454)
T 2r6a_A 295 SIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQGSGRSKENRQQEVSEISRSLKALARELEVPVIA-LSQLSRSVEQRQ 371 (454)
T ss_dssp TCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCCSCC----CHHHHHHHHHHHHHHHHHHTCCEEE-EECCCTTSTTC-
T ss_pred CCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEE-EecCCcccccCC
Confidence 58999986 5666666 68999999999998743 23467888899988876555554 556
Q ss_pred ---Ch-------hHHHhhcCeEEEecCCeE
Q 001400 367 ---PA-------PEAYELFDDVILLSEGQI 386 (1085)
Q Consensus 367 ---~~-------~~~~~~~D~ii~L~~G~i 386 (1085)
|. ..+...+|.|++|+.++.
T Consensus 372 ~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~ 401 (454)
T 2r6a_A 372 DKRPMMSDIRESGSIEQDADIVAFLYRDDY 401 (454)
T ss_dssp --CCCTHHHHTTCSHHHHCSEEEEEEETTC
T ss_pred CCCCcHHHhhccchhHhhCCEEEEEecccc
Confidence 21 146778999999987654
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=98.51 E-value=1.5e-07 Score=104.46 Aligned_cols=162 Identities=14% Similarity=0.120 Sum_probs=89.7
Q ss_pred eCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCChhcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCC
Q 001400 853 RPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLP 932 (1085)
Q Consensus 853 ~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gy~~Q~~~~~~~~tv~e~l~~~~~~~~~ 932 (1085)
++|++++|+|+||+||||++..|++... +..| +.++++.++.. ..+..|.+...+
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~--~~~G---------------~~V~lv~~D~~---r~~a~eqL~~~~----- 157 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISM--LEKH---------------KKIAFITTDTY---RIAAVEQLKTYA----- 157 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHH--HTTC---------------CCEEEEECCCS---STTHHHHHHHHH-----
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHH--HhcC---------------CEEEEEecCcc---cchHHHHHHHHH-----
Confidence 4689999999999999999999998543 1123 13455655442 234455543211
Q ss_pred CcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 001400 933 SEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVR 1012 (1085)
Q Consensus 933 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~ 1012 (1085)
+..++... ...+. ..-+.+|+ .+.+|+++|+| |+|+|+.....+.++.+
T Consensus 158 ----------------~~~gl~~~----------~~~~~-~~l~~al~--~~~~~dlvIiD--T~G~~~~~~~~~~el~~ 206 (296)
T 2px0_A 158 ----------------ELLQAPLE----------VCYTK-EEFQQAKE--LFSEYDHVFVD--TAGRNFKDPQYIDELKE 206 (296)
T ss_dssp ----------------TTTTCCCC----------BCSSH-HHHHHHHH--HGGGSSEEEEE--CCCCCTTSHHHHHHHHH
T ss_pred ----------------HhcCCCeE----------ecCCH-HHHHHHHH--HhcCCCEEEEe--CCCCChhhHHHHHHHHH
Confidence 11122110 01222 23344555 45999999999 99999876655554443
Q ss_pred HHH--HCCceEEEE--ecCccHHHHHhcCEEEEEecCcEEEEecCCCCchHHHHHHHHhccccc
Q 001400 1013 NIV--NTGRTIVCT--IHQPSIDIFESFDELLFMKRGGELIYAGPLGSKSCELIKYFEVESFMF 1072 (1085)
Q Consensus 1013 ~~~--~~g~tvi~~--~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~~~~~~~~~~~~~~~g~~ 1072 (1085)
-+. ....+++++ +|..+ ++.+.++++..+..+|.+.-.-+.......+++..... |+|
T Consensus 207 ~l~~~~~~~~~lVl~at~~~~-~~~~~~~~~~~l~~~giVltk~D~~~~~g~~~~~~~~~-~~p 268 (296)
T 2px0_A 207 TIPFESSIQSFLVLSATAKYE-DMKHIVKRFSSVPVNQYIFTKIDETTSLGSVFNILAES-KIG 268 (296)
T ss_dssp HSCCCTTEEEEEEEETTBCHH-HHHHHTTTTSSSCCCEEEEECTTTCSCCHHHHHHHHTC-SCC
T ss_pred HHhhcCCCeEEEEEECCCCHH-HHHHHHHHHhcCCCCEEEEeCCCcccchhHHHHHHHHH-CcC
Confidence 322 122234444 78754 46666676655555554432222222334566655543 555
|
| >2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ... | Back alignment and structure |
|---|
Probab=98.49 E-value=2.9e-07 Score=104.40 Aligned_cols=77 Identities=22% Similarity=0.223 Sum_probs=49.4
Q ss_pred HHHHHHHHHhcC--CCEEEEeCCCCCC----------CH---HHHHHHHHHHHHH----HHCCceEEEEecCccH-----
Q 001400 975 KRLTIAVELVAN--PSIVFMDEPTSGL----------DA---RAAAIVMRTVRNI----VNTGRTIVCTIHQPSI----- 1030 (1085)
Q Consensus 975 qrl~iA~aL~~~--p~illlDEPtsgL----------D~---~~~~~i~~~l~~~----~~~g~tvi~~~H~~~~----- 1030 (1085)
+.+.++++++.+ |+++++||+++.+ |+ ...+.+.+.++++ .+.|.|||+++|....
T Consensus 126 ~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~ 205 (349)
T 2zr9_A 126 QALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMF 205 (349)
T ss_dssp HHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-------
T ss_pred HHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCccc
Confidence 345678888765 9999999999998 33 1222444555554 3459999999996431
Q ss_pred ----------HHHHhcCEEEEEecCcEEEEec
Q 001400 1031 ----------DIFESFDELLFMKRGGELIYAG 1052 (1085)
Q Consensus 1031 ----------~~~~~~d~il~l~~gG~~~~~g 1052 (1085)
.+...+|.++.+.++ +++..|
T Consensus 206 ~~p~~~~gg~~l~~~ad~~l~lrr~-~~~k~g 236 (349)
T 2zr9_A 206 GSPETTTGGKALKFYASVRLDVRRI-ETLKDG 236 (349)
T ss_dssp ----CCSSHHHHHHHCSEEEEEEEE-EEECSS
T ss_pred CCCcccCCchHhhhccceEEEEEEe-eeeecC
Confidence 134567888888753 444334
|
| >1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A* | Back alignment and structure |
|---|
Probab=98.45 E-value=1.2e-06 Score=97.11 Aligned_cols=118 Identities=15% Similarity=0.079 Sum_probs=79.3
Q ss_pred ccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCCCceEEEEccCCCCCCCCCHHHHHH
Q 001400 152 DDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLD 231 (1085)
Q Consensus 152 ~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~ 231 (1085)
+++++. +|++++++|+||+||||++..|+|.+.+. .|+|.+.+.+... . .++ +.+
T Consensus 91 ~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~---~~~v~l~~~d~~~-----~-------------~~~-~ql- 145 (295)
T 1ls1_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGK---GRRPLLVAADTQR-----P-------------AAR-EQL- 145 (295)
T ss_dssp CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHT---TCCEEEEECCSSC-----H-------------HHH-HHH-
T ss_pred ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEecCCccc-----H-------------hHH-HHH-
Confidence 678888 99999999999999999999999998654 6788776643210 0 000 000
Q ss_pred HhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCcccccCchhh
Q 001400 232 FAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQ 311 (1085)
Q Consensus 232 f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGq 311 (1085)
..+.+..|++.... + .+-.-.+
T Consensus 146 ---------------------------------------------------~~~~~~~~l~~~~~---~----~~~~p~~ 167 (295)
T 1ls1_A 146 ---------------------------------------------------RLLGEKVGVPVLEV---M----DGESPES 167 (295)
T ss_dssp ---------------------------------------------------HHHHHHHTCCEEEC---C----TTCCHHH
T ss_pred ---------------------------------------------------HHhcccCCeEEEEc---C----CCCCHHH
Confidence 00112234432110 0 0122234
Q ss_pred hhHHHHHHHHhCCCcEeEEeCC-CCCCCHHHHHHHHHHHHHH
Q 001400 312 KKRLTTGELLVGPARVLFMDEI-SNGLDSSTTYQIIKYLKHS 352 (1085)
Q Consensus 312 kqRvsia~al~~~p~vlllDEp-tsgLD~~~~~~i~~~l~~~ 352 (1085)
-+|.+++++...+++++++|+| ++++|......+.+..+..
T Consensus 168 l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~ 209 (295)
T 1ls1_A 168 IRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVL 209 (295)
T ss_dssp HHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCEEEEeCCCCccccHHHHHHHHHHhhhc
Confidence 5688999988899999999999 9999988877777766643
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=98.42 E-value=9.1e-11 Score=129.58 Aligned_cols=131 Identities=16% Similarity=0.159 Sum_probs=82.8
Q ss_pred cCCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCCh---hcccceEEEEccCCC-CC
Q 001400 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFARISGYCEQNDI-HS 914 (1085)
Q Consensus 839 ~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gy~~Q~~~-~~ 914 (1085)
+.+..+++++++.+++| ++|+||||+|||||+++|++... .|.+.+++.+... ....+.+++++|... ..
T Consensus 59 ~~~~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 132 (278)
T 1iy2_A 59 LKNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHA 132 (278)
T ss_dssp HHCHHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT----CCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHTSC
T ss_pred HHCHHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC----CCEEEecHHHHHHHHhhHHHHHHHHHHHHHHhcC
Confidence 34456788999999999 89999999999999999998653 5788888764321 111233556666543 45
Q ss_pred CCCCHHHHHHHhhhhcCCC-cccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q 001400 915 PGLTVLESLLFSAWLRLPS-EIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMD 993 (1085)
Q Consensus 915 ~~~tv~e~l~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlD 993 (1085)
+.+++.|++......+... ..........+.+++ ..|||||+||+.+++++..+|++ +|
T Consensus 133 ~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll------------------~~lsgg~~~~~~i~~a~t~~p~~--ld 192 (278)
T 1iy2_A 133 PCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLL------------------VEMDGFEKDTAIVVMAATNRPDI--LD 192 (278)
T ss_dssp SEEEEEETHHHHHCC--------CHHHHHHHHHHH------------------HHHTTCCTTCCEEEEEEESCTTS--SC
T ss_pred CcEEehhhhHhhhcccccccCCcchHHHHHHHHHH------------------HHHhCCCCCCCEEEEEecCCchh--CC
Confidence 6677777774322111100 000111122222222 24799999999999999999986 56
Q ss_pred CC
Q 001400 994 EP 995 (1085)
Q Consensus 994 EP 995 (1085)
++
T Consensus 193 ~~ 194 (278)
T 1iy2_A 193 PA 194 (278)
T ss_dssp HH
T ss_pred Hh
Confidence 54
|
| >2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A* | Back alignment and structure |
|---|
Probab=98.42 E-value=2.1e-08 Score=118.34 Aligned_cols=166 Identities=12% Similarity=0.080 Sum_probs=92.7
Q ss_pred eeeEEEeCCeEEEEEccCCCChhHHHhhhhC--CCCCCeeeeEEEEcCccCChhcccceEEEEccCCCCC-C-CCCHHHH
Q 001400 847 NVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHS-P-GLTVLES 922 (1085)
Q Consensus 847 ~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g--~~~~~~~~G~i~i~g~~~~~~~~~~~~gy~~Q~~~~~-~-~~tv~e~ 922 (1085)
.+++.+..+..+.|.|.|||||||++++|.. ... ...|++.+.+.+.+...+... ..-+.+. + -..+.+.
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~--~~p~~v~l~liDpK~~el~~~----~~lPhl~~~Vvtd~~~a 232 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYK--AQPEDVRFIMIDPKMLELSVY----EGIPHLLTEVVTDMKDA 232 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTT--CCTTTEEEEEECCSSSGGGGG----TTCTTBSSSCBCSHHHH
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHh--CCCceEEEEEECCchhhhhhh----ccCCcccceeecCHHHH
Confidence 4778888999999999999999999999875 121 112444444443322111110 0001111 0 0112221
Q ss_pred HHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHH----------HHHHHHhcCCC-EEE
Q 001400 923 LLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRL----------TIAVELVANPS-IVF 991 (1085)
Q Consensus 923 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl----------~iA~aL~~~p~-ill 991 (1085)
...-.++ ..+..++ .+.++..++.++.+..... ...+|+||+|+. ++|+++...|. +++
T Consensus 233 ~~~L~~~-------~~EmerR-~~ll~~~Gv~~i~~yn~~~--~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlv 302 (512)
T 2ius_A 233 ANALRWC-------VNEMERR-YKLMSALGVRNLAGYNEKI--AEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVL 302 (512)
T ss_dssp HHHHHHH-------HHHHHHH-HHHHHHTTCSSHHHHHHHH--HHHHHTTCCCBCTTC---------CCBCCCCCEEEEE
T ss_pred HHHHHHH-------HHHHHHH-HHHHHHcCCccHHHHHHHH--HHHhhcCCcccccccccccchhccccccccCCcEEEE
Confidence 2111111 1222222 3667777776654321000 013677776642 35666777898 789
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHH----CCceEEEEecCcc
Q 001400 992 MDEPTSGLDARAAAIVMRTVRNIVN----TGRTIVCTIHQPS 1029 (1085)
Q Consensus 992 lDEPtsgLD~~~~~~i~~~l~~~~~----~g~tvi~~~H~~~ 1029 (1085)
+||+++-+|.. ...+.+.+.++++ .|.++|++||+|+
T Consensus 303 IDE~~~ll~~~-~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~ 343 (512)
T 2ius_A 303 VDEFADLMMTV-GKKVEELIARLAQKARAAGIHLVLATQRPS 343 (512)
T ss_dssp EETHHHHHHHH-HHHHHHHHHHHHHHCGGGTEEEEEEESCCC
T ss_pred EeCHHHHHhhh-hHHHHHHHHHHHHHhhhCCcEEEEEecCCc
Confidence 99999999843 3455666666543 3779999999997
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
Probab=98.41 E-value=9.9e-11 Score=127.40 Aligned_cols=132 Identities=16% Similarity=0.154 Sum_probs=82.7
Q ss_pred CCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCCh---hcccceEEEEccCCC-CCC
Q 001400 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFARISGYCEQNDI-HSP 915 (1085)
Q Consensus 840 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gy~~Q~~~-~~~ 915 (1085)
.+..+++++++.+++| ++|+||||+|||||+++|++... .|.+.++|.+... ....+.+++++|... ..+
T Consensus 36 ~~~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 109 (254)
T 1ixz_A 36 KNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAP 109 (254)
T ss_dssp HCHHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT----CCEEEEEHHHHHHSCTTHHHHHHHHHHHHHTTSSS
T ss_pred HCHHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC----CCEEEeeHHHHHHHHhhHHHHHHHHHHHHHHhcCC
Confidence 3445788999999999 99999999999999999998653 5778888764321 111233456666532 456
Q ss_pred CCCHHHHHHHhhhhcCC-CcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Q 001400 916 GLTVLESLLFSAWLRLP-SEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDE 994 (1085)
Q Consensus 916 ~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDE 994 (1085)
.+++.|++......+.. ...........+.+++. .|||||+||+.+++++..+|++ +|+
T Consensus 110 ~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~------------------~l~g~~~~~~~i~~a~t~~p~~--ld~ 169 (254)
T 1ixz_A 110 CIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLV------------------EMDGFEKDTAIVVMAATNRPDI--LDP 169 (254)
T ss_dssp EEEEEETHHHHHC---------CHHHHHHHHHHHH------------------HHHTCCTTCCEEEEEEESCGGG--SCG
T ss_pred eEEEehhhhhhhcccCccccccchHHHHHHHHHHH------------------HHhCCCCCCCEEEEEccCCchh--CCH
Confidence 66777777322211110 00011111222222221 4789999999999999999986 677
Q ss_pred CCC
Q 001400 995 PTS 997 (1085)
Q Consensus 995 Pts 997 (1085)
+.-
T Consensus 170 ~l~ 172 (254)
T 1ixz_A 170 ALL 172 (254)
T ss_dssp GGG
T ss_pred HHc
Confidence 653
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=98.40 E-value=5.6e-08 Score=100.59 Aligned_cols=43 Identities=9% Similarity=0.142 Sum_probs=36.6
Q ss_pred CchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHH
Q 001400 307 ISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKH 351 (1085)
Q Consensus 307 LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~ 351 (1085)
|..-..+++.+|++++.+|+++++| ||++|.....++++.|.+
T Consensus 146 l~~~~~~~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~ 188 (191)
T 1oix_A 146 LRHLRAVPTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILT 188 (191)
T ss_dssp GGGGCCSCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHH
T ss_pred cccccccCHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHH
Confidence 4443445688999999999999999 999999999999998865
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=98.39 E-value=3.6e-08 Score=115.48 Aligned_cols=51 Identities=22% Similarity=0.134 Sum_probs=45.2
Q ss_pred eEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccC
Q 001400 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPK 895 (1085)
Q Consensus 842 ~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 895 (1085)
..+|++|||+|++ +++||+||||||||||+++|+|... +.+|+|.++|.++
T Consensus 17 ~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~~ 67 (483)
T 3euj_A 17 WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALI--PDLTLLNFRNTTE 67 (483)
T ss_dssp ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHC--CCTTTCCCCCTTS
T ss_pred cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCC--CCCCEEEECCEEc
Confidence 3468899999999 9999999999999999999999765 4579999999764
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
Probab=98.38 E-value=1.5e-09 Score=118.11 Aligned_cols=47 Identities=36% Similarity=0.541 Sum_probs=42.0
Q ss_pred eecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccC
Q 001400 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGF 202 (1085)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~ 202 (1085)
.+++++++.+++| ++|+||||||||||+++|++.+. .|.|.++|.++
T Consensus 39 ~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~-----~~~i~~~~~~~ 85 (254)
T 1ixz_A 39 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDF 85 (254)
T ss_dssp HHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEHHHH
T ss_pred HHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC-----CCEEEeeHHHH
Confidence 5899999999999 99999999999999999999874 68888888654
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=98.38 E-value=1.9e-09 Score=118.84 Aligned_cols=76 Identities=25% Similarity=0.347 Sum_probs=54.0
Q ss_pred eecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCC---CceEEEEccCCC-CCCCC
Q 001400 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP---PRTSAYVSQQDW-QVAEM 224 (1085)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~---~~~~~yv~Q~d~-~~~~l 224 (1085)
.+++++++.+++| ++|+||||||||||+++|++.+. .|.|.++|.++..... .+.+++++|... ..+.+
T Consensus 63 ~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~-----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i 135 (278)
T 1iy2_A 63 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCI 135 (278)
T ss_dssp HHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHTSCSEE
T ss_pred HHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC-----CCEEEecHHHHHHHHhhHHHHHHHHHHHHHHhcCCcE
Confidence 5899999999999 99999999999999999999874 6889888865432211 123445555432 34445
Q ss_pred CHHHHHH
Q 001400 225 TVRETLD 231 (1085)
Q Consensus 225 TV~E~l~ 231 (1085)
++.|++.
T Consensus 136 ~~iDeid 142 (278)
T 1iy2_A 136 VFIDEID 142 (278)
T ss_dssp EEEETHH
T ss_pred EehhhhH
Confidence 5555553
|
| >3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=98.35 E-value=7.9e-09 Score=126.51 Aligned_cols=162 Identities=15% Similarity=0.106 Sum_probs=99.5
Q ss_pred cCCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCChhcccceEEEEccCCC------
Q 001400 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDI------ 912 (1085)
Q Consensus 839 ~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gy~~Q~~~------ 912 (1085)
++...+++++++.+++|+.++|+||||+|||||+++|++.... ...|.+.+++.+... ....++||++...
T Consensus 44 ~G~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~-~~~~~~~~~~~~~~~--~~p~i~~~p~g~~~~~~e~ 120 (604)
T 3k1j_A 44 IGQEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPT-ETLEDILVFPNPEDE--NMPRIKTVPACQGRRIVEK 120 (604)
T ss_dssp CSCHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCC-SSCEEEEEECCTTCT--TSCEEEEEETTHHHHHHHH
T ss_pred ECchhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCc-ccCCeEEEeCCcccc--cCCcEEEEecchHHHHHHH
Confidence 3556788899999999999999999999999999999996543 123788888766432 3445788876431
Q ss_pred ----------------CCCCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHH
Q 001400 913 ----------------HSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKR 976 (1085)
Q Consensus 913 ----------------~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqr 976 (1085)
.+..+++.+|+.....-..+...... . .....++++........ ..++|+|++|+
T Consensus 121 ~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~-~---~~~~~~L~G~~~~~~~~-----~g~~~~g~~~~ 191 (604)
T 3k1j_A 121 YREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDA-T---GAHAGALLGDVRHDPFQ-----SGGLGTPAHER 191 (604)
T ss_dssp HHHHHHHHTCC-----------CCCEEEECCTTCSSCCEEEC-T---TCCHHHHHCEECCCCC---------CCCCGGGG
T ss_pred HHHhhccchhhhhhcccccccccccceeeccccCCCCCEEEc-C---CCCHHhcCceEEechhh-----cCCcccccccc
Confidence 11111221221110000000000000 0 00011122221111111 13689999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 001400 977 LTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRN 1013 (1085)
Q Consensus 977 l~iA~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~ 1013 (1085)
+..++...+++.+|||||... |++..+..+.+.|.+
T Consensus 192 i~~g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 192 VEPGMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp EECCHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred ccCceeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 999999999999999999988 899999888888875
|
| >3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.34 E-value=3.8e-07 Score=103.12 Aligned_cols=32 Identities=34% Similarity=0.396 Sum_probs=28.9
Q ss_pred eeEeCCeEEEEeCCCCCChhHHHHHHHhhhCC
Q 001400 156 GIIRPSRLTLLLGPPSSGKTTLLLALAGRLGH 187 (1085)
Q Consensus 156 ~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~ 187 (1085)
+-+++|+++.|.||||||||||+..+++...+
T Consensus 56 GGi~~G~i~~I~GppGsGKSTLal~la~~~~~ 87 (356)
T 3hr8_A 56 GGYPRGRIVEIFGQESSGKTTLALHAIAEAQK 87 (356)
T ss_dssp SSEETTEEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCccCCcEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 46899999999999999999999999987643
|
| >3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=98.32 E-value=2e-08 Score=105.06 Aligned_cols=70 Identities=21% Similarity=0.184 Sum_probs=46.4
Q ss_pred eEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCCh---hcccceEEEEccCCCCCCCCCHHHHHH
Q 001400 849 TGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFARISGYCEQNDIHSPGLTVLESLL 924 (1085)
Q Consensus 849 s~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gy~~Q~~~~~~~~tv~e~l~ 924 (1085)
|+++++|++++|+||||||||||+++|+|..+ .+.+++..... ....+.++|++|++..++.+++.+++.
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA------EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFL 73 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS------SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEE
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC------CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcEE
Confidence 56678999999999999999999999999642 24445433221 112445789999876666656555543
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=98.30 E-value=1.8e-07 Score=96.72 Aligned_cols=38 Identities=18% Similarity=0.251 Sum_probs=33.8
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 001400 975 KRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNI 1014 (1085)
Q Consensus 975 qrl~iA~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~ 1014 (1085)
+...+|++++.+|+++++| ||++|......+++.|.+.
T Consensus 152 ~~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~~ 189 (191)
T 1oix_A 152 VPTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILTE 189 (191)
T ss_dssp SCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHHH
Confidence 3467899999999999999 9999999999999988763
|
| >2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A* | Back alignment and structure |
|---|
Probab=98.28 E-value=1.8e-07 Score=110.37 Aligned_cols=167 Identities=12% Similarity=0.055 Sum_probs=87.7
Q ss_pred cceeeEeCCeEEEEeCCCCCChhHHHHHHHh-hhCCCCceeeEEEECCccCCCCCCCceEEEEccCCCCCCCC--CHHHH
Q 001400 153 DLSGIIRPSRLTLLLGPPSSGKTTLLLALAG-RLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEM--TVRET 229 (1085)
Q Consensus 153 ~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G-~l~~~~~~~G~i~~~G~~~~~~~~~~~~~yv~Q~d~~~~~l--TV~E~ 229 (1085)
.+++.+.++..++|.|++||||||+|++|.. ++... ..|+|.+.+.+.+... .+.-..+|++ +|.++
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~--~p~~v~l~liDpK~~e--------l~~~~~lPhl~~~Vvtd 228 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKA--QPEDVRFIMIDPKMLE--------LSVYEGIPHLLTEVVTD 228 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTC--CTTTEEEEEECCSSSG--------GGGGTTCTTBSSSCBCS
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhC--CCceEEEEEECCchhh--------hhhhccCCcccceeecC
Confidence 3778888999999999999999999999875 33221 1466655554432210 0100012221 22222
Q ss_pred HHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCccccc--ccccCcccccC
Q 001400 230 LDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCAD--TLVGDEMLKGI 307 (1085)
Q Consensus 230 l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~d--t~vg~~~~~~L 307 (1085)
...+.... .....++ +.+ ...++..|+.+..+ ..+. ..+
T Consensus 229 ~~~a~~~L-----~~~~~Em-----------------------------erR-~~ll~~~Gv~~i~~yn~~~~----~~~ 269 (512)
T 2ius_A 229 MKDAANAL-----RWCVNEM-----------------------------ERR-YKLMSALGVRNLAGYNEKIA----EAD 269 (512)
T ss_dssp HHHHHHHH-----HHHHHHH-----------------------------HHH-HHHHHHTTCSSHHHHHHHHH----HHH
T ss_pred HHHHHHHH-----HHHHHHH-----------------------------HHH-HHHHHHcCCccHHHHHHHHH----HHh
Confidence 22111100 0000111 112 24566667655322 1111 248
Q ss_pred chhhhhHH----------HHHHHHhCCCc-EeEEeCCCCCCCHHHHHHHHHHHHHHHhccC--CEEEEEEecChh
Q 001400 308 SGGQKKRL----------TTGELLVGPAR-VLFMDEISNGLDSSTTYQIIKYLKHSTRALD--GTTVISLLQPAP 369 (1085)
Q Consensus 308 SGGqkqRv----------sia~al~~~p~-vlllDEptsgLD~~~~~~i~~~l~~~~~~~~--~t~ii~~~q~~~ 369 (1085)
||||+||. .+++++...|. ++++||++.-+|.. ...+.+.+.++++... +..++..+|...
T Consensus 270 s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlvIDE~~~ll~~~-~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~ 343 (512)
T 2ius_A 270 RMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDEFADLMMTV-GKKVEELIARLAQKARAAGIHLVLATQRPS 343 (512)
T ss_dssp HTTCCCBCTTC---------CCBCCCCCEEEEEEETHHHHHHHH-HHHHHHHHHHHHHHCGGGTEEEEEEESCCC
T ss_pred hcCCcccccccccccchhccccccccCCcEEEEEeCHHHHHhhh-hHHHHHHHHHHHHHhhhCCcEEEEEecCCc
Confidence 99998863 34556677887 89999999998843 3445555555543221 334444555543
|
| >2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ... | Back alignment and structure |
|---|
Probab=98.27 E-value=1e-06 Score=99.89 Aligned_cols=30 Identities=37% Similarity=0.496 Sum_probs=26.9
Q ss_pred eeEeCCeEEEEeCCCCCChhHHHHHHHhhh
Q 001400 156 GIIRPSRLTLLLGPPSSGKTTLLLALAGRL 185 (1085)
Q Consensus 156 ~~i~~G~~~~llGp~GsGKSTLL~~L~G~l 185 (1085)
+-+++|+++.|.||||||||||+..++...
T Consensus 56 GGl~~G~iv~I~G~pGsGKTtLal~la~~~ 85 (349)
T 2zr9_A 56 GGLPRGRVIEIYGPESSGKTTVALHAVANA 85 (349)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 468999999999999999999988888654
|
| >1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=98.24 E-value=5.2e-08 Score=103.38 Aligned_cols=59 Identities=15% Similarity=0.072 Sum_probs=40.3
Q ss_pred eeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCC-----------CCceEEEEccC
Q 001400 155 SGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV-----------PPRTSAYVSQQ 217 (1085)
Q Consensus 155 s~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~-----------~~~~~~yv~Q~ 217 (1085)
++.+.+ ++++|+|||||||||||++|+|.+.|. +|+|.++|.++.... .++.++||+|+
T Consensus 22 ~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 22 TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPD---LTLLHFRNTTEAGATSGSRDKGLHGKLKAGVCYSMLD 91 (227)
T ss_dssp EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCC---TTTC------------------CGGGBCSSEEEEEEE
T ss_pred EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccC---CCeEEECCEEcccCCccccccchhhHhhcCcEEEEEe
Confidence 455666 899999999999999999999999886 899999998762211 13567888874
|
| >3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=98.22 E-value=3.1e-07 Score=98.07 Aligned_cols=40 Identities=20% Similarity=0.137 Sum_probs=23.3
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHH-hhhCC
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALA-GRLGH 187 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~-G~l~~ 187 (1085)
.+..+++|+.+++|++++|+||||||||||+++|+ |.+++
T Consensus 14 ~~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~ 54 (231)
T 3lnc_A 14 AQTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNN 54 (231)
T ss_dssp --------CCEECCCEEEEECSCC----CHHHHHHC----C
T ss_pred hcccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCC
Confidence 35789999999999999999999999999999999 98743
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=98.15 E-value=1.2e-06 Score=91.12 Aligned_cols=37 Identities=16% Similarity=0.289 Sum_probs=32.3
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 001400 977 LTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIV 1015 (1085)
Q Consensus 977 l~iA~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~ 1015 (1085)
...|++++.+|+++++| ||++|......+++.|.+..
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~~ 166 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTEI 166 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHHH
Confidence 35689999999999999 99999999999998887653
|
| >2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* | Back alignment and structure |
|---|
Probab=98.11 E-value=7.3e-06 Score=96.35 Aligned_cols=61 Identities=16% Similarity=0.221 Sum_probs=39.2
Q ss_pred hhhhhHHHHHHHHhCCCcEeEEeCC----------CCCCCHHHHHHHHHHHHHHHh--ccCCEEEEEEecChh
Q 001400 309 GGQKKRLTTGELLVGPARVLFMDEI----------SNGLDSSTTYQIIKYLKHSTR--ALDGTTVISLLQPAP 369 (1085)
Q Consensus 309 GGqkqRvsia~al~~~p~vlllDEp----------tsgLD~~~~~~i~~~l~~~~~--~~~~t~ii~~~q~~~ 369 (1085)
|+++.|..+++|....|.|||+||+ +.|.|......+.+.|..+-. ...+.+||..++...
T Consensus 93 ~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~ 165 (476)
T 2ce7_A 93 GAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPD 165 (476)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGG
T ss_pred cHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChh
Confidence 5678888899999999999999999 346676665556666655432 123456666666543
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A | Back alignment and structure |
|---|
Probab=98.09 E-value=1.6e-06 Score=98.86 Aligned_cols=161 Identities=17% Similarity=0.061 Sum_probs=87.4
Q ss_pred CCeE-EEEeCCCCCChhHHHHHHHhhhCCC--------CceeeEEEECCccCCCCCCCceEEEEccCCCCCCCCCHHHHH
Q 001400 160 PSRL-TLLLGPPSSGKTTLLLALAGRLGHH--------LQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETL 230 (1085)
Q Consensus 160 ~G~~-~~llGp~GsGKSTLL~~L~G~l~~~--------~~~~G~i~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l 230 (1085)
+|-. ++|+|+||||||||+++|+|..... ...+|.|.++|.++. ...+.|++.|.+...-+ ..+.++
T Consensus 177 ~~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~---l~DT~G~i~~lp~~lve-~f~~tl 252 (364)
T 2qtf_A 177 NNIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIM---LVDTVGFIRGIPPQIVD-AFFVTL 252 (364)
T ss_dssp --CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEE---EEECCCBCSSCCGGGHH-HHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEE---EEeCCCchhcCCHHHHH-HHHHHH
Confidence 3444 9999999999999999999975310 135789999885431 11233444442211000 011122
Q ss_pred HHhhhhcCCCCchhhhHHHHHHHHHhCCCCCch--HHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCcccccCc
Q 001400 231 DFAGQCQGVGSKYDMITELARREKIAGIKPDED--LDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGIS 308 (1085)
Q Consensus 231 ~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d--~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LS 308 (1085)
.........-.-++ . .+++ .+. ....+..+++.+++.+..--.|++. ..-+|
T Consensus 253 ~~~~~aD~il~VvD-------------~-s~~~~~~~~-----------~~~~~~~~L~~l~~~~~p~ilV~NK-~Dl~~ 306 (364)
T 2qtf_A 253 SEAKYSDALILVID-------------S-TFSENLLIE-----------TLQSSFEILREIGVSGKPILVTLNK-IDKIN 306 (364)
T ss_dssp HGGGGSSEEEEEEE-------------T-TSCHHHHHH-----------HHHHHHHHHHHHTCCSCCEEEEEEC-GGGCC
T ss_pred HHHHhCCEEEEEEE-------------C-CCCcchHHH-----------HHHHHHHHHHHhCcCCCCEEEEEEC-CCCCC
Confidence 11100000000000 0 0010 000 0123566788888765543444543 34578
Q ss_pred hhhhhHHHHH----HHH-hCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 001400 309 GGQKKRLTTG----ELL-VGPARVLFMDEISNGLDSSTTYQIIKYLKHSTR 354 (1085)
Q Consensus 309 GGqkqRvsia----~al-~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~ 354 (1085)
+|+++|+.++ +++ ..+|++ +|+|++|......+++.|.+...
T Consensus 307 ~~~~~~~~~~~~l~~~l~~~~~~~----~~~SA~~g~gi~~L~~~I~~~l~ 353 (364)
T 2qtf_A 307 GDLYKKLDLVEKLSKELYSPIFDV----IPISALKRTNLELLRDKIYQLAT 353 (364)
T ss_dssp SCHHHHHHHHHHHHHHHCSCEEEE----EECBTTTTBSHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHhcCCCCcE----EEEECCCCcCHHHHHHHHHHHhc
Confidence 8888988887 555 334444 89999999999999998887654
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} | Back alignment and structure |
|---|
Probab=98.08 E-value=1.9e-07 Score=97.43 Aligned_cols=70 Identities=16% Similarity=0.083 Sum_probs=48.9
Q ss_pred eeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCC--CCceEEEEccCCCCCCCCCHHHHHHH
Q 001400 156 GIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV--PPRTSAYVSQQDWQVAEMTVRETLDF 232 (1085)
Q Consensus 156 ~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~lTV~E~l~f 232 (1085)
...++|++++|+||||||||||+++|+|.+ |.+.++|.++.... .....++++|++...+.+++.+++..
T Consensus 24 m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~-------g~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 95 (200)
T 4eun_A 24 MTGEPTRHVVVMGVSGSGKTTIAHGVADET-------GLEFAEADAFHSPENIATMQRGIPLTDEDRWPWLRSLAEWMD 95 (200)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHH-------CCEEEEGGGGSCHHHHHHHHTTCCCCHHHHHHHHHHHHHHHH
T ss_pred hcCCCCcEEEEECCCCCCHHHHHHHHHHhh-------CCeEEcccccccHHHHHHHhcCCCCCCcccccHHHHHHHHHH
Confidence 455789999999999999999999999976 77888887653210 01235778887655555666666654
|
| >1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=98.04 E-value=1.5e-07 Score=99.86 Aligned_cols=59 Identities=19% Similarity=0.115 Sum_probs=39.7
Q ss_pred eEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCCh-----------hcccceEEEEccC
Q 001400 849 TGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ-----------ETFARISGYCEQN 910 (1085)
Q Consensus 849 s~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~-----------~~~~~~~gy~~Q~ 910 (1085)
++++.+ ++++|+||||||||||+++|+|... +.+|+|.++|.+... ...++.++|++|+
T Consensus 22 ~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 22 TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALI--PDLTLLHFRNTTEAGATSGSRDKGLHGKLKAGVCYSMLD 91 (227)
T ss_dssp EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHS--CCTTTC------------------CGGGBCSSEEEEEEE
T ss_pred EEEEcC-cEEEEECCCCCCHHHHHHHHhcccc--cCCCeEEECCEEcccCCccccccchhhHhhcCcEEEEEe
Confidence 566666 8999999999999999999999765 347889888876521 1234568999974
|
| >3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=98.04 E-value=1.1e-06 Score=93.90 Aligned_cols=38 Identities=32% Similarity=0.261 Sum_probs=22.9
Q ss_pred EEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhh-CCCC
Q 001400 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLA-GRKT 880 (1085)
Q Consensus 843 ~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~-g~~~ 880 (1085)
+..+++||++++|++++|+||||||||||+++|+ |...
T Consensus 15 ~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 15 QTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp -------CCEECCCEEEEECSCC----CHHHHHHC----
T ss_pred cccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 4567999999999999999999999999999999 8753
|
| >3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.02 E-value=1.2e-06 Score=99.11 Aligned_cols=28 Identities=25% Similarity=0.381 Sum_probs=26.0
Q ss_pred EEeCCeEEEEEccCCCChhHHHhhhhCC
Q 001400 851 AFRPGVLTALVGVSGAGKTTLMDVLAGR 878 (1085)
Q Consensus 851 ~i~~Ge~~al~G~nGaGKSTLl~~l~g~ 878 (1085)
-+++|+++.|.||+|+|||||+..+++.
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~ 84 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAE 84 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999999999874
|
| >2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* | Back alignment and structure |
|---|
Probab=98.01 E-value=4.4e-06 Score=98.21 Aligned_cols=59 Identities=20% Similarity=0.290 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCC----------CCCCCHHHHHHHHHHHHHHH----HCCceEEEEecCcc
Q 001400 971 TEQRKRLTIAVELVANPSIVFMDEP----------TSGLDARAAAIVMRTVRNIV----NTGRTIVCTIHQPS 1029 (1085)
Q Consensus 971 ~Gqrqrl~iA~aL~~~p~illlDEP----------tsgLD~~~~~~i~~~l~~~~----~~g~tvi~~~H~~~ 1029 (1085)
+++++|-.+++|....|.|||+||+ ++|.|......+.+++..+- ..+..||.+||+++
T Consensus 93 ~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~ 165 (476)
T 2ce7_A 93 GAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPD 165 (476)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGG
T ss_pred cHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChh
Confidence 5778888899999999999999999 34677777777777777653 24678999999975
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=97.98 E-value=6.9e-06 Score=85.17 Aligned_cols=39 Identities=13% Similarity=0.216 Sum_probs=33.3
Q ss_pred hHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHH
Q 001400 313 KRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHST 353 (1085)
Q Consensus 313 qRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~ 353 (1085)
.....|++++.+|+++++| ||++|......+++.|.+..
T Consensus 128 ~~~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~~ 166 (199)
T 2f9l_A 128 VPTDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTEI 166 (199)
T ss_dssp SCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHHH
Confidence 3456799999999999999 99999999999998887543
|
| >3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X* | Back alignment and structure |
|---|
Probab=97.97 E-value=3.7e-06 Score=85.97 Aligned_cols=36 Identities=22% Similarity=0.206 Sum_probs=33.1
Q ss_pred ccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCC
Q 001400 152 DDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHH 188 (1085)
Q Consensus 152 ~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~ 188 (1085)
+++++.+.+| +++|+||||||||||+++|.+.+.+.
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~ 53 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGL 53 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCC
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 7889999999 99999999999999999999988653
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} | Back alignment and structure |
|---|
Probab=97.96 E-value=3.2e-07 Score=95.71 Aligned_cols=55 Identities=22% Similarity=0.199 Sum_probs=37.4
Q ss_pred EEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCChh--cccceEEEEccC
Q 001400 850 GAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE--TFARISGYCEQN 910 (1085)
Q Consensus 850 ~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~--~~~~~~gy~~Q~ 910 (1085)
...++|++++|+|+||||||||+++|++.. |.+.++|.+.... ......|+++|+
T Consensus 24 m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~------g~~~i~~d~~~~~~~~~~~~~g~~~~~ 80 (200)
T 4eun_A 24 MTGEPTRHVVVMGVSGSGKTTIAHGVADET------GLEFAEADAFHSPENIATMQRGIPLTD 80 (200)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHH------CCEEEEGGGGSCHHHHHHHHTTCCCCH
T ss_pred hcCCCCcEEEEECCCCCCHHHHHHHHHHhh------CCeEEcccccccHHHHHHHhcCCCCCC
Confidence 455789999999999999999999999743 7788888664321 111234566654
|
| >4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=97.95 E-value=8.3e-06 Score=91.52 Aligned_cols=139 Identities=17% Similarity=0.179 Sum_probs=88.9
Q ss_pred ceeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCCCceEEEEccCCCCCCCCCH
Q 001400 147 KLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTV 226 (1085)
Q Consensus 147 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV 226 (1085)
...-|+.+.+-++||+++.|.|+||+|||||+.-++..... +| ..+.|++= +++.
T Consensus 32 G~~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~----------~g---------~~Vl~fSl------Ems~ 86 (338)
T 4a1f_A 32 GFVQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALN----------DD---------RGVAVFSL------EMSA 86 (338)
T ss_dssp SCHHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHH----------TT---------CEEEEEES------SSCH
T ss_pred CChHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH----------cC---------CeEEEEeC------CCCH
Confidence 34567888888999999999999999999999999865421 11 13455442 3455
Q ss_pred HHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCccccc
Q 001400 227 RETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKG 306 (1085)
Q Consensus 227 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 306 (1085)
.+...= + ... ..+ +.+....+ ..
T Consensus 87 ~ql~~R---l-------------ls~--~~~-------------------------------v~~~~l~~--------g~ 109 (338)
T 4a1f_A 87 EQLALR---A-------------LSD--LTS-------------------------------INMHDLES--------GR 109 (338)
T ss_dssp HHHHHH---H-------------HHH--HHC-------------------------------CCHHHHHH--------TC
T ss_pred HHHHHH---H-------------HHH--hhC-------------------------------CCHHHHhc--------CC
Confidence 443310 0 000 000 00110000 14
Q ss_pred CchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEecC
Q 001400 307 ISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSE 383 (1085)
Q Consensus 307 LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~~ 383 (1085)
||+++.+|++.|...+.++++++.|+|... ..+|...++.+.+..++..+|++ |.+-+|..
T Consensus 110 Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~s-----i~~i~~~ir~l~~~~gg~~lIVI-----------DyLqlm~~ 170 (338)
T 4a1f_A 110 LDDDQWENLAKCFDHLSQKKLFFYDKSYVR-----IEQIRLQLRKLKSQHKELGIAFI-----------DYLQLMSG 170 (338)
T ss_dssp CCHHHHHHHHHHHHHHHHSCEEEECCTTCC-----HHHHHHHHHHHHHHCTTEEEEEE-----------EEEECCCT
T ss_pred CCHHHHHHHHHHHHHHhcCCeEEeCCCCCc-----HHHHHHHHHHHHHhcCCCCEEEE-----------echHHhcC
Confidence 999999999999999999999999998643 33566666666554424555555 77777754
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A | Back alignment and structure |
|---|
Probab=97.94 E-value=7.3e-06 Score=93.43 Aligned_cols=150 Identities=16% Similarity=0.133 Sum_probs=83.5
Q ss_pred CeE-EEEEccCCCChhHHHhhhhCCCCC---------CeeeeEEEEcCccCChhcccceEEEEccCCCCCCCCCHHH---
Q 001400 855 GVL-TALVGVSGAGKTTLMDVLAGRKTG---------GIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLE--- 921 (1085)
Q Consensus 855 Ge~-~al~G~nGaGKSTLl~~l~g~~~~---------~~~~G~i~i~g~~~~~~~~~~~~gy~~Q~~~~~~~~tv~e--- 921 (1085)
|-. ++|+|++|||||||++.|+|.... ++..|.+.++|.+.. +....|++.+.+. ..+..
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~---l~DT~G~i~~lp~----~lve~f~~ 250 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIM---LVDTVGFIRGIPP----QIVDAFFV 250 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEE---EEECCCBCSSCCG----GGHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEE---EEeCCCchhcCCH----HHHHHHHH
Confidence 444 899999999999999999995421 145688988885431 1122344443221 11111
Q ss_pred HHHHh--hh--h--cCCCccc--HHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHH----HHH-hcCCC
Q 001400 922 SLLFS--AW--L--RLPSEIE--LETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIA----VEL-VANPS 988 (1085)
Q Consensus 922 ~l~~~--~~--~--~~~~~~~--~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA----~aL-~~~p~ 988 (1085)
.+... +. + ....+.. .......+.++++.+++.+..--.+.. ....+|+++++++.++ +++ ..+|+
T Consensus 251 tl~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~N-K~Dl~~~~~~~~~~~~~~l~~~l~~~~~~ 329 (364)
T 2qtf_A 251 TLSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLN-KIDKINGDLYKKLDLVEKLSKELYSPIFD 329 (364)
T ss_dssp HHHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEE-CGGGCCSCHHHHHHHHHHHHHHHCSCEEE
T ss_pred HHHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEE-CCCCCCchHHHHHHHHHHHHHHhcCCCCc
Confidence 11100 00 0 0001111 122333456677777654432101110 1234687888888877 555 43445
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 001400 989 IVFMDEPTSGLDARAAAIVMRTVRNIVN 1016 (1085)
Q Consensus 989 illlDEPtsgLD~~~~~~i~~~l~~~~~ 1016 (1085)
+ +|+|++|......+.+.|.+...
T Consensus 330 ~----~~~SA~~g~gi~~L~~~I~~~l~ 353 (364)
T 2qtf_A 330 V----IPISALKRTNLELLRDKIYQLAT 353 (364)
T ss_dssp E----EECBTTTTBSHHHHHHHHHHHHH
T ss_pred E----EEEECCCCcCHHHHHHHHHHHhc
Confidence 4 89999999999999999988653
|
| >2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=97.88 E-value=4.2e-06 Score=87.26 Aligned_cols=31 Identities=23% Similarity=0.193 Sum_probs=27.3
Q ss_pred eEeCCeEEEEeCCCCCChhHHHHHHHhhhCC
Q 001400 157 IIRPSRLTLLLGPPSSGKTTLLLALAGRLGH 187 (1085)
Q Consensus 157 ~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~ 187 (1085)
.+++|++++|+|||||||||++++|++.+.+
T Consensus 2 ~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~ 32 (207)
T 2j41_A 2 DNEKGLLIVLSGPSGVGKGTVRKRIFEDPST 32 (207)
T ss_dssp --CCCCEEEEECSTTSCHHHHHHHHHHCTTC
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHhhCC
Confidence 5789999999999999999999999998854
|
| >1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A | Back alignment and structure |
|---|
Probab=97.88 E-value=3e-06 Score=94.87 Aligned_cols=81 Identities=15% Similarity=0.003 Sum_probs=61.0
Q ss_pred ecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCC-------C-----CceEEEE-cc
Q 001400 150 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV-------P-----PRTSAYV-SQ 216 (1085)
Q Consensus 150 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~-------~-----~~~~~yv-~Q 216 (1085)
+++++++.+++|++++|+|||||||||++..|++.+.+. .|+|.+.+.+..... . +..+.++ +|
T Consensus 94 ~~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~---g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~ 170 (320)
T 1zu4_A 94 KKYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAEL---GYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKAN 170 (320)
T ss_dssp --CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHT---TCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCS
T ss_pred cccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHC---CCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCC
Confidence 457899999999999999999999999999999998654 789998876653210 1 4467888 77
Q ss_pred CCCCCCCCCHHHHHHHh
Q 001400 217 QDWQVAEMTVRETLDFA 233 (1085)
Q Consensus 217 ~d~~~~~lTV~E~l~f~ 233 (1085)
.....|..++.+++..+
T Consensus 171 ~~~~~p~~~~~~~l~~~ 187 (320)
T 1zu4_A 171 KLNADPASVVFDAIKKA 187 (320)
T ss_dssp STTCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 65555555677777553
|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* | Back alignment and structure |
|---|
Probab=97.87 E-value=6.9e-06 Score=102.89 Aligned_cols=74 Identities=11% Similarity=0.111 Sum_probs=56.2
Q ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHHCCceEEEE-ecCccHHHHHhcCEEEEE
Q 001400 968 GLSTEQRKRLTIAVELVANPSIVFMDEPTS-GLDARAAAIVMRTVRNIVNTGRTIVCT-IHQPSIDIFESFDELLFM 1042 (1085)
Q Consensus 968 ~LS~Gqrqrl~iA~aL~~~p~illlDEPts-gLD~~~~~~i~~~l~~~~~~g~tvi~~-~H~~~~~~~~~~d~il~l 1042 (1085)
-+|.|+.+|..++..++.++++|++|||.. +||......+++.+.......++|+++ ||+++ .+.+.++..-++
T Consensus 190 v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~-~l~~~~~~~~vi 265 (773)
T 2xau_A 190 YMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAE-KFQRYFNDAPLL 265 (773)
T ss_dssp EEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCH-HHHHHTTSCCEE
T ss_pred EECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHH-HHHHHhcCCCcc
Confidence 479999999999999999999999999997 999877666666665544345677775 88765 466666643333
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.85 E-value=6.4e-06 Score=85.69 Aligned_cols=41 Identities=27% Similarity=0.105 Sum_probs=25.8
Q ss_pred cceeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhC
Q 001400 146 SKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLG 186 (1085)
Q Consensus 146 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~ 186 (1085)
....+++|||+.+++|+.++|+|||||||||+.+.|++.++
T Consensus 10 ~~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 10 GVDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp --------------CCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 34579999999999999999999999999999999998874
|
| >2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.84 E-value=3.4e-07 Score=108.26 Aligned_cols=49 Identities=37% Similarity=0.532 Sum_probs=42.9
Q ss_pred eecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCC
Q 001400 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKE 204 (1085)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~ 204 (1085)
.+++++++.+++| ++|+||||+|||||+++|+|... .|.+.++|.++.+
T Consensus 54 ~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~-----~~~i~i~g~~~~~ 102 (499)
T 2dhr_A 54 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDFVE 102 (499)
T ss_dssp GGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT-----CCEEEEEGGGGTS
T ss_pred hhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC-----CCEEEEehhHHHH
Confidence 4789999999999 99999999999999999999874 6788899876543
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.77 E-value=4.4e-05 Score=86.97 Aligned_cols=61 Identities=11% Similarity=0.177 Sum_probs=48.0
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEe-CCCCCCCHHHHHHHHHHHHHHHHCCceEEEEe--cCcc
Q 001400 967 NGLSTEQRKRLTIAVELVANPSIVFMD-EPTSGLDARAAAIVMRTVRNIVNTGRTIVCTI--HQPS 1029 (1085)
Q Consensus 967 ~~LS~Gqrqrl~iA~aL~~~p~illlD-EPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~--H~~~ 1029 (1085)
..+|++++|++. +.+...++-++++| +|++++|......+.+.+..... +..+|++. ||..
T Consensus 230 ~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~NK~Dl~ 293 (357)
T 2e87_A 230 SERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVINKIDVA 293 (357)
T ss_dssp TTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEECCTTTC
T ss_pred hhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEEECcccC
Confidence 358999998776 55555677788999 99999999988888877776543 78888888 8864
|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* | Back alignment and structure |
|---|
Probab=97.74 E-value=2.1e-05 Score=98.52 Aligned_cols=74 Identities=16% Similarity=0.157 Sum_probs=57.2
Q ss_pred cccCchhhhhHHHHHHHHhCCCcEeEEeCCCC-CCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeE
Q 001400 304 LKGISGGQKKRLTTGELLVGPARVLFMDEISN-GLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDV 378 (1085)
Q Consensus 304 ~~~LSGGqkqRvsia~al~~~p~vlllDEpts-gLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i 378 (1085)
+.-+|+|+.+|..++..++.+++++++|||.. +||......+++.+..... ...+++++.+++...+.+++++.
T Consensus 188 I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~-~~~iIl~SAT~~~~~l~~~~~~~ 262 (773)
T 2xau_A 188 LKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRP-DLKIIIMSATLDAEKFQRYFNDA 262 (773)
T ss_dssp EEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCT-TCEEEEEESCSCCHHHHHHTTSC
T ss_pred EEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCC-CceEEEEeccccHHHHHHHhcCC
Confidence 34589999999999999999999999999996 9998877777776664432 12355566677877777888753
|
| >3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* | Back alignment and structure |
|---|
Probab=97.73 E-value=3.4e-06 Score=87.84 Aligned_cols=52 Identities=25% Similarity=0.307 Sum_probs=42.9
Q ss_pred ceeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEE--EECCccC
Q 001400 147 KLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKI--TYNGHGF 202 (1085)
Q Consensus 147 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i--~~~G~~~ 202 (1085)
.....+.++...++|++++|+|||||||||++++|++.+. . .|.+ .++|.++
T Consensus 11 ~~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~---~G~~~~~~d~d~~ 64 (200)
T 3uie_A 11 SVEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-Q---KGKLCYILDGDNV 64 (200)
T ss_dssp CCCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-H---TTCCEEEEEHHHH
T ss_pred ccCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-h---cCceEEEecCchh
Confidence 3456677788889999999999999999999999999985 2 5766 7777554
|
| >4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=97.73 E-value=1.5e-05 Score=89.33 Aligned_cols=127 Identities=16% Similarity=0.162 Sum_probs=77.4
Q ss_pred eeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCChhcccceEEEEccCCCCCCCCCHHHHHH
Q 001400 845 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLESLL 924 (1085)
Q Consensus 845 L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gy~~Q~~~~~~~~tv~e~l~ 924 (1085)
|+.+..-+++|+++.|.|++|+|||||+.-++.... . .|. .+.|+. ..++..+-..
T Consensus 36 LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a---~------~g~---------~Vl~fS------lEms~~ql~~ 91 (338)
T 4a1f_A 36 LDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSAL---N------DDR---------GVAVFS------LEMSAEQLAL 91 (338)
T ss_dssp HHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHH---H------TTC---------EEEEEE------SSSCHHHHHH
T ss_pred HHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH---H------cCC---------eEEEEe------CCCCHHHHHH
Confidence 344555689999999999999999999988875321 0 111 122322 1233332211
Q ss_pred HhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHH
Q 001400 925 FSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAA 1004 (1085)
Q Consensus 925 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEPtsgLD~~~~ 1004 (1085)
++......+++..+.+ ..||.++++|++.|...+.++++++.|+|...+|
T Consensus 92 ------------------Rlls~~~~v~~~~l~~--------g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si~---- 141 (338)
T 4a1f_A 92 ------------------RALSDLTSINMHDLES--------GRLDDDQWENLAKCFDHLSQKKLFFYDKSYVRIE---- 141 (338)
T ss_dssp ------------------HHHHHHHCCCHHHHHH--------TCCCHHHHHHHHHHHHHHHHSCEEEECCTTCCHH----
T ss_pred ------------------HHHHHhhCCCHHHHhc--------CCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcHH----
Confidence 0111111111111111 2599999999999999999999999999876543
Q ss_pred HHHHHHHHHHHH-C-CceEEEEec
Q 001400 1005 AIVMRTVRNIVN-T-GRTIVCTIH 1026 (1085)
Q Consensus 1005 ~~i~~~l~~~~~-~-g~tvi~~~H 1026 (1085)
.|...++++.+ . |..+|+|-|
T Consensus 142 -~i~~~ir~l~~~~gg~~lIVIDy 164 (338)
T 4a1f_A 142 -QIRLQLRKLKSQHKELGIAFIDY 164 (338)
T ss_dssp -HHHHHHHHHHHHCTTEEEEEEEE
T ss_pred -HHHHHHHHHHHhcCCCCEEEEec
Confidence 45555666543 3 677777754
|
| >3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.69 E-value=5.3e-06 Score=89.42 Aligned_cols=40 Identities=35% Similarity=0.423 Sum_probs=37.2
Q ss_pred eeecccceeeEeC---CeEEEEeCCCCCChhHHHHHHHhhhCC
Q 001400 148 LTILDDLSGIIRP---SRLTLLLGPPSSGKTTLLLALAGRLGH 187 (1085)
Q Consensus 148 ~~iL~~vs~~i~~---G~~~~llGp~GsGKSTLL~~L~G~l~~ 187 (1085)
.++|+|+|+.|++ |+.++|+|++||||||+.++|++.+..
T Consensus 32 ~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~lg~ 74 (250)
T 3nwj_A 32 QQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSLGY 74 (250)
T ss_dssp CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHHTC
T ss_pred chhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 4699999999999 999999999999999999999998753
|
| >4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis} | Back alignment and structure |
|---|
Probab=97.66 E-value=3.4e-06 Score=91.34 Aligned_cols=66 Identities=21% Similarity=0.119 Sum_probs=44.5
Q ss_pred ecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEE--------ECCccCCCCC----CCceEEEEccC
Q 001400 150 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKIT--------YNGHGFKEFV----PPRTSAYVSQQ 217 (1085)
Q Consensus 150 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~--------~~G~~~~~~~----~~~~~~yv~Q~ 217 (1085)
++++.+ ++|++++|+|||||||||++++|+.+++-....+|.|. .+|.++.... ..+.+++++|.
T Consensus 19 ~~~~m~---~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 95 (252)
T 4e22_A 19 ERPHMT---AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVS 95 (252)
T ss_dssp ----CT---TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEE
T ss_pred hhhhcC---CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEec
Confidence 444443 78999999999999999999999933322223489988 8887764321 12456778765
Q ss_pred C
Q 001400 218 D 218 (1085)
Q Consensus 218 d 218 (1085)
+
T Consensus 96 ~ 96 (252)
T 4e22_A 96 Q 96 (252)
T ss_dssp E
T ss_pred C
Confidence 3
|
| >2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=97.62 E-value=1.2e-05 Score=83.62 Aligned_cols=29 Identities=31% Similarity=0.387 Sum_probs=25.8
Q ss_pred EEeCCeEEEEEccCCCChhHHHhhhhCCC
Q 001400 851 AFRPGVLTALVGVSGAGKTTLMDVLAGRK 879 (1085)
Q Consensus 851 ~i~~Ge~~al~G~nGaGKSTLl~~l~g~~ 879 (1085)
++++|++++|+|+||||||||+++|++..
T Consensus 2 ~i~~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 2 DNEKGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp --CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 57899999999999999999999999865
|
| >3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.60 E-value=3e-06 Score=91.30 Aligned_cols=39 Identities=33% Similarity=0.521 Sum_probs=34.8
Q ss_pred CCeEEeeeeeEEEeC---CeEEEEEccCCCChhHHHhhhhCC
Q 001400 840 DRLQLLVNVTGAFRP---GVLTALVGVSGAGKTTLMDVLAGR 878 (1085)
Q Consensus 840 ~~~~~L~~vs~~i~~---Ge~~al~G~nGaGKSTLl~~l~g~ 878 (1085)
+...+|+|+|++|++ |++++|+|++||||||+.++|++.
T Consensus 30 ~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~ 71 (250)
T 3nwj_A 30 EEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARS 71 (250)
T ss_dssp --CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHH
T ss_pred CcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 345689999999999 999999999999999999999974
|
| >2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.59 E-value=1.1e-07 Score=112.46 Aligned_cols=75 Identities=23% Similarity=0.228 Sum_probs=50.9
Q ss_pred EEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCChh---cccceEEEEccCCC-CCCCCC
Q 001400 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE---TFARISGYCEQNDI-HSPGLT 918 (1085)
Q Consensus 843 ~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~---~~~~~~gy~~Q~~~-~~~~~t 918 (1085)
.+++++++.+++| +.|+||||+|||||+++|++... .+-+.++|.+.... ...+.+.+++|... ..|.+.
T Consensus 54 ~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~----~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~~~p~il 127 (499)
T 2dhr_A 54 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIV 127 (499)
T ss_dssp GGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT----CCEEEEEGGGGTSSCTTHHHHHHHHHTTTSSSSSSCEE
T ss_pred hhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC----CCEEEEehhHHHHhhhhhHHHHHHHHHHHHHhcCCCEE
Confidence 4567888889888 89999999999999999998643 46788888654221 11223445566543 345555
Q ss_pred HHHHH
Q 001400 919 VLESL 923 (1085)
Q Consensus 919 v~e~l 923 (1085)
+.|++
T Consensus 128 ~IDEI 132 (499)
T 2dhr_A 128 FIDEI 132 (499)
T ss_dssp EEECG
T ss_pred EEehH
Confidence 55555
|
| >1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A | Back alignment and structure |
|---|
Probab=97.59 E-value=1.6e-05 Score=90.68 Aligned_cols=44 Identities=36% Similarity=0.328 Sum_probs=39.5
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEE
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITY 197 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~ 197 (1085)
..+|+++++.+++|++++|+||||||||||+++|+|.+ .|.+..
T Consensus 156 ~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~------~g~~~~ 199 (377)
T 1svm_A 156 YDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC------GGKALN 199 (377)
T ss_dssp HHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH------CCEEEC
T ss_pred HHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc------CCcEEE
Confidence 46899999999999999999999999999999999975 566654
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.58 E-value=3e-05 Score=79.18 Aligned_cols=38 Identities=16% Similarity=0.198 Sum_probs=30.6
Q ss_pred eCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEEC
Q 001400 159 RPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYN 198 (1085)
Q Consensus 159 ~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~ 198 (1085)
.+|++++|+||||||||||+++|++.+++ ...|.|.+.
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~~--~~~~~i~~t 40 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHPD--RFAYPIPHT 40 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCTT--TEECCCCEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCCc--cEEEeeecc
Confidence 36899999999999999999999998753 235666543
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* | Back alignment and structure |
|---|
Probab=97.57 E-value=1.9e-05 Score=97.31 Aligned_cols=133 Identities=17% Similarity=0.101 Sum_probs=71.2
Q ss_pred eEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCCh---hcccceEEEEccCCCCCCCCCHHHHHHH
Q 001400 849 TGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFARISGYCEQNDIHSPGLTVLESLLF 925 (1085)
Q Consensus 849 s~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gy~~Q~~~~~~~~tv~e~l~~ 925 (1085)
|+.+++|..++|+|++|+|||||++.|++....-...|+| .+|..... ....+.+++..|...+... +
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~-~------- 73 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFR-G------- 73 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEET-T-------
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCCHHHHhcCCeEEecceEEeeC-C-------
Confidence 3456789999999999999999999999643211134655 44443221 1122233333332111100 0
Q ss_pred hhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHH
Q 001400 926 SAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAA 1005 (1085)
Q Consensus 926 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEPtsgLD~~~~~ 1005 (1085)
....++-.||-..++ .......-..+.-++++| |+.|+++.+..
T Consensus 74 ------------------------------~~~nliDTpG~~~f~-----~~~~~~l~~ad~~ilVvD-~~~g~~~qt~~ 117 (665)
T 2dy1_A 74 ------------------------------HRVFLLDAPGYGDFV-----GEIRGALEAADAALVAVS-AEAGVQVGTER 117 (665)
T ss_dssp ------------------------------EEEEEEECCCSGGGH-----HHHHHHHHHCSEEEEEEE-TTTCSCHHHHH
T ss_pred ------------------------------EEEEEEeCCCccchH-----HHHHHHHhhcCcEEEEEc-CCcccchhHHH
Confidence 000011112111121 112223335677888999 99999988774
Q ss_pred HHHHHHHHHHHCCceEEEEecCccH
Q 001400 1006 IVMRTVRNIVNTGRTIVCTIHQPSI 1030 (1085)
Q Consensus 1006 ~i~~~l~~~~~~g~tvi~~~H~~~~ 1030 (1085)
. ++.+ .+.+.++|++.|..+.
T Consensus 118 ~-~~~~---~~~~ip~ilv~NKiD~ 138 (665)
T 2dy1_A 118 A-WTVA---ERLGLPRMVVVTKLDK 138 (665)
T ss_dssp H-HHHH---HHTTCCEEEEEECGGG
T ss_pred H-HHHH---HHccCCEEEEecCCch
Confidence 3 3333 3358889999997653
|
| >3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=97.56 E-value=0.00013 Score=81.50 Aligned_cols=38 Identities=29% Similarity=0.378 Sum_probs=32.8
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhh
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRL 185 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l 185 (1085)
..-|+++.+-++||+++.|.|+||+|||||+.-++...
T Consensus 55 ~~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~ 92 (315)
T 3bh0_A 55 FTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNM 92 (315)
T ss_dssp CHHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred hHHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 45677777889999999999999999999998888543
|
| >2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A* | Back alignment and structure |
|---|
Probab=97.53 E-value=1.9e-05 Score=84.08 Aligned_cols=42 Identities=21% Similarity=0.065 Sum_probs=35.2
Q ss_pred ceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccC
Q 001400 154 LSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGF 202 (1085)
Q Consensus 154 vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~ 202 (1085)
-++..++|++++|.|++|||||||+++|+|. .|+|.+.+.+.
T Consensus 13 ~~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~-------~g~v~~~~~~~ 54 (230)
T 2vp4_A 13 KYAEGTQPFTVLIEGNIGSGKTTYLNHFEKY-------KNDICLLTEPV 54 (230)
T ss_dssp CBTTTCCCEEEEEECSTTSCHHHHHHTTGGG-------TTTEEEECCTH
T ss_pred ccCCCCCceEEEEECCCCCCHHHHHHHHHhc-------cCCeEEEecCH
Confidence 3445689999999999999999999999986 47788877653
|
| >4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis} | Back alignment and structure |
|---|
Probab=97.53 E-value=9.6e-06 Score=87.76 Aligned_cols=57 Identities=25% Similarity=0.203 Sum_probs=45.2
Q ss_pred eCCeEEEEEccCCCChhHHHhhhh---CCCCCCeeeeEEE--------EcCccCCh----hcccceEEEEccCC
Q 001400 853 RPGVLTALVGVSGAGKTTLMDVLA---GRKTGGIIEGDIY--------ISGYPKRQ----ETFARISGYCEQND 911 (1085)
Q Consensus 853 ~~Ge~~al~G~nGaGKSTLl~~l~---g~~~~~~~~G~i~--------i~g~~~~~----~~~~~~~gy~~Q~~ 911 (1085)
++|++++|+|+|||||||++++|+ |... +.+|.++ .+|.+... ..+++.+++++|.+
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~--~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 96 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRL--LDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVSQ 96 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEE--EEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCc--CCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEecC
Confidence 689999999999999999999999 8655 5678888 78876532 23556678888753
|
| >1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A | Back alignment and structure |
|---|
Probab=97.52 E-value=1.3e-05 Score=89.54 Aligned_cols=77 Identities=18% Similarity=0.180 Sum_probs=52.3
Q ss_pred eeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCCh-------hcc-----cceEEEE-ccCC
Q 001400 845 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ-------ETF-----ARISGYC-EQND 911 (1085)
Q Consensus 845 L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~-------~~~-----~~~~gy~-~Q~~ 911 (1085)
+++++|.+++|++++|+|+||+||||++..|++... ...|+|.+.+.+... ..+ +..++++ +|..
T Consensus 95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~--~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~ 172 (320)
T 1zu4_A 95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYA--ELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKL 172 (320)
T ss_dssp -CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHH--HTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSST
T ss_pred ccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHH--HCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCC
Confidence 358888999999999999999999999999998543 224778887766532 112 3457778 5654
Q ss_pred CCCCCCCHHHHH
Q 001400 912 IHSPGLTVLESL 923 (1085)
Q Consensus 912 ~~~~~~tv~e~l 923 (1085)
...|..++.+++
T Consensus 173 ~~~p~~~~~~~l 184 (320)
T 1zu4_A 173 NADPASVVFDAI 184 (320)
T ss_dssp TCCHHHHHHHHH
T ss_pred CCCHHHHHHHHH
Confidence 333333334443
|
| >3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X* | Back alignment and structure |
|---|
Probab=97.51 E-value=3.5e-05 Score=78.63 Aligned_cols=32 Identities=34% Similarity=0.519 Sum_probs=29.3
Q ss_pred eeeeEEEeCCeEEEEEccCCCChhHHHhhhhCC
Q 001400 846 VNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGR 878 (1085)
Q Consensus 846 ~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~ 878 (1085)
+++++.+.+| +++|+|+||||||||+++|.+.
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~ 49 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFV 49 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHH
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHH
Confidence 4788999999 9999999999999999999874
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.49 E-value=3.8e-05 Score=79.77 Aligned_cols=38 Identities=32% Similarity=0.132 Sum_probs=23.9
Q ss_pred CeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCC
Q 001400 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGR 878 (1085)
Q Consensus 841 ~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~ 878 (1085)
....++||||++++|++++|+|++||||||+.+.|++.
T Consensus 11 ~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~ 48 (199)
T 3vaa_A 11 VDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARK 48 (199)
T ss_dssp -------------CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 34578899999999999999999999999999999964
|
| >3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=97.47 E-value=3.4e-05 Score=85.97 Aligned_cols=57 Identities=12% Similarity=0.097 Sum_probs=43.1
Q ss_pred eecccceeeEeCCe------EEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCCCceEEEEccCCCCCC
Q 001400 149 TILDDLSGIIRPSR------LTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVA 222 (1085)
Q Consensus 149 ~iL~~vs~~i~~G~------~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~~~~~~yv~Q~d~~~~ 222 (1085)
..|++++..+..++ +++|+||||||||||+++|++.+... ...| .++++++++.+.+
T Consensus 74 ~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~-~~~~----------------~v~~i~~D~f~~~ 136 (321)
T 3tqc_A 74 QTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRW-PDHP----------------NVEVITTDGFLYS 136 (321)
T ss_dssp HHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTS-TTCC----------------CEEEEEGGGGBCC
T ss_pred HHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhccc-CCCC----------------eEEEEeecccccc
Confidence 46777777776665 99999999999999999999998631 0122 4677888876554
|
| >1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.46 E-value=2e-05 Score=82.20 Aligned_cols=71 Identities=7% Similarity=0.020 Sum_probs=42.2
Q ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHH-HHHhcCEEEEEec
Q 001400 970 STEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSID-IFESFDELLFMKR 1044 (1085)
Q Consensus 970 S~Gqrqrl~iA~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~-~~~~~d~il~l~~ 1044 (1085)
+.|+.+|..++..+..+|..+..+ ++.++|.....+.+.++.. .+.+||+.+|.+... ....||.++++.-
T Consensus 61 ~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~--~~~~vv~~~~~l~e~~~~~~~d~vi~l~~ 132 (206)
T 1jjv_A 61 EQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ--TAPYTLFVVPLLIENKLTALCDRILVVDV 132 (206)
T ss_dssp -----CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC--CSSEEEEECTTTTTTTCGGGCSEEEEEEC
T ss_pred cCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc--CCCEEEEEechhhhcCcHhhCCEEEEEEC
Confidence 578888888888888877643222 3455666666665555432 356888888875321 2456899888853
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=97.45 E-value=0.00057 Score=78.22 Aligned_cols=44 Identities=9% Similarity=0.025 Sum_probs=35.8
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH---CCceEEEEecCcc
Q 001400 985 ANPSIVFMDEPTSGLDARAAAIVMRTVRNIVN---TGRTIVCTIHQPS 1029 (1085)
Q Consensus 985 ~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~---~g~tvi~~~H~~~ 1029 (1085)
.+|.+|++||+... |......+.+.+.+... .+.++|+++|+++
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~ 170 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDA 170 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTH
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCch
Confidence 45889999999876 88888888888876655 5788999999874
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* | Back alignment and structure |
|---|
Probab=97.43 E-value=6e-05 Score=76.31 Aligned_cols=35 Identities=23% Similarity=0.389 Sum_probs=29.7
Q ss_pred eCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCc
Q 001400 159 RPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGH 200 (1085)
Q Consensus 159 ~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~ 200 (1085)
.+|++++|+|||||||||++++|++.+ |.+.+++.
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~-------g~~~i~~d 40 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL-------HAAFLDGD 40 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH-------TCEEEEGG
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh-------CcEEEeCc
Confidence 468999999999999999999999875 55666653
|
| >3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=97.41 E-value=6.7e-05 Score=78.52 Aligned_cols=29 Identities=28% Similarity=0.276 Sum_probs=27.0
Q ss_pred eCCeEEEEeCCCCCChhHHHHHHHhhhCC
Q 001400 159 RPSRLTLLLGPPSSGKTTLLLALAGRLGH 187 (1085)
Q Consensus 159 ~~G~~~~llGp~GsGKSTLL~~L~G~l~~ 187 (1085)
++|++++|+||||||||||++.|++.+++
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 58999999999999999999999998765
|
| >1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=97.40 E-value=4.5e-05 Score=79.34 Aligned_cols=40 Identities=23% Similarity=0.094 Sum_probs=33.2
Q ss_pred EeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCc
Q 001400 158 IRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGH 200 (1085)
Q Consensus 158 i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~ 200 (1085)
.++|++++|+|+||||||||+++|++.+.+. .|.|.+.+.
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~---~~~v~~~~~ 58 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQ---GISVCVFHM 58 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHT---TCCEEEEEG
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhc---CCeEEEecc
Confidence 5689999999999999999999999988653 566665543
|
| >3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* | Back alignment and structure |
|---|
Probab=97.40 E-value=0.00021 Score=81.38 Aligned_cols=57 Identities=11% Similarity=0.187 Sum_probs=39.6
Q ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCC-ceEEEEec
Q 001400 969 LSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTG-RTIVCTIH 1026 (1085)
Q Consensus 969 LS~Gqrqrl~iA~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g-~tvi~~~H 1026 (1085)
.+..++++..+++..+.+|+++++.-..+..|... ....++++.+...| .+|+++++
T Consensus 155 ~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~-~~~~~l~~~~~~~~~~~i~V~nK 212 (360)
T 3t34_A 155 SDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT-SDAIKISREVDPSGDRTFGVLTK 212 (360)
T ss_dssp CSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG-CHHHHHHHHSCTTCTTEEEEEEC
T ss_pred chhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC-HHHHHHHHHhcccCCCEEEEEeC
Confidence 46788899999999999999777774334445443 34566666665445 57777776
|
| >2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A* | Back alignment and structure |
|---|
Probab=97.40 E-value=5e-05 Score=80.83 Aligned_cols=39 Identities=23% Similarity=0.267 Sum_probs=33.1
Q ss_pred EEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccC
Q 001400 851 AFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPK 895 (1085)
Q Consensus 851 ~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 895 (1085)
..++|++++|+|+||||||||+++|+|. .|+|.+.+.|.
T Consensus 16 ~~~~g~~i~i~G~~GsGKSTl~~~L~~~------~g~v~~~~~~~ 54 (230)
T 2vp4_A 16 EGTQPFTVLIEGNIGSGKTTYLNHFEKY------KNDICLLTEPV 54 (230)
T ss_dssp TTCCCEEEEEECSTTSCHHHHHHTTGGG------TTTEEEECCTH
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhc------cCCeEEEecCH
Confidence 3478999999999999999999999986 36688887763
|
| >2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* | Back alignment and structure |
|---|
Probab=97.38 E-value=9.2e-05 Score=77.21 Aligned_cols=45 Identities=29% Similarity=0.252 Sum_probs=37.3
Q ss_pred eeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCCCceEEEEccCCCCCCC
Q 001400 156 GIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAE 223 (1085)
Q Consensus 156 ~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~~~~~~yv~Q~d~~~~~ 223 (1085)
-.+++|++++|+|+|||||||+++.|++.++ .+.+++|++.+++.
T Consensus 16 ~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~-----------------------~~~~i~~D~~~~~~ 60 (207)
T 2qt1_A 16 PRGSKTFIIGISGVTNSGKTTLAKNLQKHLP-----------------------NCSVISQDDFFKPE 60 (207)
T ss_dssp CCSCCCEEEEEEESTTSSHHHHHHHHHTTST-----------------------TEEEEEGGGGBCCG
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHHHHHhcC-----------------------CcEEEeCCccccCH
Confidence 4578899999999999999999999998652 26788888876543
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X | Back alignment and structure |
|---|
Probab=97.36 E-value=8.7e-05 Score=82.41 Aligned_cols=64 Identities=8% Similarity=0.080 Sum_probs=44.0
Q ss_pred CCHHHHHHHHHHHHHh--cCCCEEEEeCCCCCCCHHH-HHHHHHHHHHHHHC-Cc--eEEEEecCccHHHHHhcCEEE
Q 001400 969 LSTEQRKRLTIAVELV--ANPSIVFMDEPTSGLDARA-AAIVMRTVRNIVNT-GR--TIVCTIHQPSIDIFESFDELL 1040 (1085)
Q Consensus 969 LS~Gqrqrl~iA~aL~--~~p~illlDEPtsgLD~~~-~~~i~~~l~~~~~~-g~--tvi~~~H~~~~~~~~~~d~il 1040 (1085)
+|.|++ .+++.+. ..|.|+++ +.+|... ...+.+.+.++.+. |. .+.+++|+-. .+.+.+|.+.
T Consensus 101 ~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~-~v~~l~~~i~ 170 (301)
T 1ega_A 101 WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGL-NVDTIAAIVR 170 (301)
T ss_dssp CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTT-THHHHHHHHH
T ss_pred CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCCC-CHHHHHHHHH
Confidence 888886 4566666 67999998 8999876 66777888887653 43 5666677644 3555555543
|
| >1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A | Back alignment and structure |
|---|
Probab=97.35 E-value=0.0008 Score=76.05 Aligned_cols=28 Identities=29% Similarity=0.331 Sum_probs=25.6
Q ss_pred EEEeCCeEEEEEccCCCChhHHHhhhhC
Q 001400 850 GAFRPGVLTALVGVSGAGKTTLMDVLAG 877 (1085)
Q Consensus 850 ~~i~~Ge~~al~G~nGaGKSTLl~~l~g 877 (1085)
+-+++|+++.|.|++|+|||||+..++.
T Consensus 117 GGl~~G~i~~I~G~~GsGKTtla~~la~ 144 (343)
T 1v5w_A 117 GGIESMAITEAFGEFRTGKTQLSHTLCV 144 (343)
T ss_dssp SSBCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3578999999999999999999998886
|
| >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=97.33 E-value=8.5e-05 Score=76.71 Aligned_cols=29 Identities=17% Similarity=0.310 Sum_probs=26.4
Q ss_pred EeCCeEEEEeCCCCCChhHHHHHHHhhhC
Q 001400 158 IRPSRLTLLLGPPSSGKTTLLLALAGRLG 186 (1085)
Q Consensus 158 i~~G~~~~llGp~GsGKSTLL~~L~G~l~ 186 (1085)
..+|++++|+||||||||||++.|++.++
T Consensus 16 ~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 16 FQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 34899999999999999999999999865
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.32 E-value=7.1e-05 Score=76.36 Aligned_cols=37 Identities=16% Similarity=0.213 Sum_probs=28.5
Q ss_pred CCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEc
Q 001400 854 PGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYIS 891 (1085)
Q Consensus 854 ~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~ 891 (1085)
+|++++|+||||||||||++.|++.... ...|.|...
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~~-~~~~~i~~t 40 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHPD-RFAYPIPHT 40 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCTT-TEECCCCEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCc-cEEEeeecc
Confidence 6899999999999999999999985431 134555443
|
| >1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.32 E-value=6.7e-05 Score=78.18 Aligned_cols=70 Identities=14% Similarity=0.130 Sum_probs=37.5
Q ss_pred CchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHH--HhhcCeEEEec
Q 001400 307 ISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEA--YELFDDVILLS 382 (1085)
Q Consensus 307 LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~--~~~~D~ii~L~ 382 (1085)
.+.|+.+|..+++.++.+|+.+.++ .+.+++.....+.+.++.. .++.+|+ -.+...+. ...||.+++|+
T Consensus 60 ~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~---~~~~vv~-~~~~l~e~~~~~~~d~vi~l~ 131 (206)
T 1jjv_A 60 TEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ---TAPYTLF-VVPLLIENKLTALCDRILVVD 131 (206)
T ss_dssp ------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC---CSSEEEE-ECTTTTTTTCGGGCSEEEEEE
T ss_pred ccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc---CCCEEEE-EechhhhcCcHhhCCEEEEEE
Confidence 3678999999999998888654433 2345555555555444321 2344443 33444443 56788888774
|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=97.29 E-value=0.0019 Score=71.08 Aligned_cols=27 Identities=44% Similarity=0.669 Sum_probs=24.4
Q ss_pred eCCeEEEEeCCCCCChhHHHHHHHhhh
Q 001400 159 RPSRLTLLLGPPSSGKTTLLLALAGRL 185 (1085)
Q Consensus 159 ~~G~~~~llGp~GsGKSTLL~~L~G~l 185 (1085)
.++.-++|.||||+|||||++++++.+
T Consensus 52 ~~~~~vll~Gp~GtGKT~la~~la~~~ 78 (297)
T 3b9p_A 52 APAKGLLLFGPPGNGKTLLARAVATEC 78 (297)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 467789999999999999999999865
|
| >3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00035 Score=79.59 Aligned_cols=34 Identities=26% Similarity=0.410 Sum_probs=27.5
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhh
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGR 184 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~ 184 (1085)
..+|+++++.++ .++|+|++|||||||+++|.|.
T Consensus 24 ~~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~ 57 (360)
T 3t34_A 24 SSALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGK 57 (360)
T ss_dssp SCCC----CCCC---EEEEECBTTSSHHHHHHHHHTS
T ss_pred ccccccccccCC---EEEEECCCCCcHHHHHHHHhCC
Confidence 458999999998 9999999999999999999994
|
| >3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* | Back alignment and structure |
|---|
Probab=97.25 E-value=2.7e-05 Score=80.94 Aligned_cols=47 Identities=23% Similarity=0.248 Sum_probs=36.6
Q ss_pred eeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEE--EEcCccC
Q 001400 846 VNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDI--YISGYPK 895 (1085)
Q Consensus 846 ~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i--~i~g~~~ 895 (1085)
+.+++..++|++++|+|+||||||||++.|++... ..|.+ +++|.+.
T Consensus 16 ~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~---~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 16 DRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY---QKGKLCYILDGDNV 64 (200)
T ss_dssp HHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH---HTTCCEEEEEHHHH
T ss_pred HHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH---hcCceEEEecCchh
Confidence 34555668899999999999999999999998542 23555 7887543
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* | Back alignment and structure |
|---|
Probab=97.22 E-value=7.7e-05 Score=91.91 Aligned_cols=46 Identities=30% Similarity=0.292 Sum_probs=34.0
Q ss_pred eeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccC
Q 001400 155 SGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGF 202 (1085)
Q Consensus 155 s~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~ 202 (1085)
|+.+++|+.++|+|++|+|||||++.|++..... ...|+| .+|...
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~-~~~G~V-~~g~~~ 48 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAK-ERRGRV-EEGTTT 48 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSS-SSCCCG-GGTCCS
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCC-Ccccee-cCCccc
Confidence 3457889999999999999999999999876541 236777 555443
|
| >2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A* | Back alignment and structure |
|---|
Probab=97.21 E-value=0.00085 Score=75.21 Aligned_cols=55 Identities=16% Similarity=0.151 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHh---cCCCEEEEeCCCCCCCH--------HH----HHHHHHHHHHHHH-CCceEEEEecC
Q 001400 973 QRKRLTIAVELV---ANPSIVFMDEPTSGLDA--------RA----AAIVMRTVRNIVN-TGRTIVCTIHQ 1027 (1085)
Q Consensus 973 qrqrl~iA~aL~---~~p~illlDEPtsgLD~--------~~----~~~i~~~l~~~~~-~g~tvi~~~H~ 1027 (1085)
+.+.+..+++++ .+|+++++|+.++-.+. .. ...+++.|+++++ .+.+||++.|-
T Consensus 187 ~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~nq~ 257 (324)
T 2z43_A 187 QIAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPGRENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQV 257 (324)
T ss_dssp HHHHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCTTTSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC
T ss_pred HHHHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcCcccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEcce
Confidence 446777788887 57999999999986542 11 2344555555554 48999999884
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.21 E-value=0.00049 Score=78.27 Aligned_cols=56 Identities=9% Similarity=0.123 Sum_probs=41.7
Q ss_pred cCchhhhhHHHHHHHHhCCCcEeEEe-CCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEE
Q 001400 306 GISGGQKKRLTTGELLVGPARVLFMD-EISNGLDSSTTYQIIKYLKHSTRALDGTTVISL 364 (1085)
Q Consensus 306 ~LSGGqkqRvsia~al~~~p~vlllD-EptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~ 364 (1085)
.+|+|++|++. +.+...++-++++| ++.+++|......+++.+..... +..+++..
T Consensus 231 ~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~--~~piilV~ 287 (357)
T 2e87_A 231 ERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK--DLPFLVVI 287 (357)
T ss_dssp TSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT--TSCEEEEE
T ss_pred hhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC--CCCEEEEE
Confidence 58999988876 55556778889999 99999999988888877776532 34444433
|
| >2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A* | Back alignment and structure |
|---|
Probab=97.20 E-value=0.0019 Score=72.40 Aligned_cols=36 Identities=36% Similarity=0.409 Sum_probs=30.3
Q ss_pred ecccce-eeEeCCeEEEEeCCCCCChhHHHHHHHhhh
Q 001400 150 ILDDLS-GIIRPSRLTLLLGPPSSGKTTLLLALAGRL 185 (1085)
Q Consensus 150 iL~~vs-~~i~~G~~~~llGp~GsGKSTLL~~L~G~l 185 (1085)
-|+.+- +-+++|+++.|.||||||||||+..++...
T Consensus 95 ~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 95 ALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp HHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred hHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHH
Confidence 455543 679999999999999999999999998753
|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=97.20 E-value=0.0014 Score=72.13 Aligned_cols=71 Identities=21% Similarity=0.296 Sum_probs=43.5
Q ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHH----------HHHHHHHHHHHHHH----CCceEEEEecCcc---HHH
Q 001400 970 STEQRKRLTIAVELVANPSIVFMDEPTSGLDAR----------AAAIVMRTVRNIVN----TGRTIVCTIHQPS---IDI 1032 (1085)
Q Consensus 970 S~Gqrqrl~iA~aL~~~p~illlDEPtsgLD~~----------~~~~i~~~l~~~~~----~g~tvi~~~H~~~---~~~ 1032 (1085)
+++++.+..++.+...+|.+|++||+.+-++.. ....+...+..... .+..||++|+++. ..+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l 176 (297)
T 3b9p_A 97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAA 176 (297)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHH
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHH
Confidence 456777777888888899999999998776532 22233344433211 2356788888753 223
Q ss_pred HHhcCEEE
Q 001400 1033 FESFDELL 1040 (1085)
Q Consensus 1033 ~~~~d~il 1040 (1085)
...|++.+
T Consensus 177 ~~R~~~~i 184 (297)
T 3b9p_A 177 LRRFTKRV 184 (297)
T ss_dssp HHHCCEEE
T ss_pred HhhCCeEE
Confidence 34455443
|
| >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00016 Score=72.83 Aligned_cols=27 Identities=37% Similarity=0.530 Sum_probs=24.7
Q ss_pred CCeEEEEeCCCCCChhHHHHHHHhhhC
Q 001400 160 PSRLTLLLGPPSSGKTTLLLALAGRLG 186 (1085)
Q Consensus 160 ~G~~~~llGp~GsGKSTLL~~L~G~l~ 186 (1085)
.|++++|+|||||||||++++|++.++
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 467899999999999999999999874
|
| >1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A | Back alignment and structure |
|---|
Probab=97.18 E-value=0.0015 Score=73.77 Aligned_cols=35 Identities=31% Similarity=0.307 Sum_probs=29.9
Q ss_pred ecccce-eeEeCCeEEEEeCCCCCChhHHHHHHHhh
Q 001400 150 ILDDLS-GIIRPSRLTLLLGPPSSGKTTLLLALAGR 184 (1085)
Q Consensus 150 iL~~vs-~~i~~G~~~~llGp~GsGKSTLL~~L~G~ 184 (1085)
-|+.+- +-+++|+++.|.||||||||||+..++..
T Consensus 110 ~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 110 EFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp HHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred hHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 345443 57999999999999999999999999875
|
| >3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=97.17 E-value=0.0001 Score=88.14 Aligned_cols=42 Identities=33% Similarity=0.372 Sum_probs=35.7
Q ss_pred eEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceee-EEE-ECCcc
Q 001400 157 IIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSG-KIT-YNGHG 201 (1085)
Q Consensus 157 ~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G-~i~-~~G~~ 201 (1085)
.+++|++++|+|+||||||||+++|+|++.+. +| +|. ++|.+
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~---~G~~i~~lDgD~ 408 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEM---GGRCVTLLDGDI 408 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTT---CSSCEEEESSHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhccc---CCceEEEECCcH
Confidence 57899999999999999999999999999764 54 674 77643
|
| >3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=97.12 E-value=0.00034 Score=78.12 Aligned_cols=130 Identities=13% Similarity=0.136 Sum_probs=74.0
Q ss_pred EeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCChhcccceEEEEccCCCCCCCCCHHHHH
Q 001400 844 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLESL 923 (1085)
Q Consensus 844 ~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gy~~Q~~~~~~~~tv~e~l 923 (1085)
-|+++.+-+++|+++.|.|++|+|||||+..++.... ..| ..+.|+.- .++..+-.
T Consensus 57 ~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a---~~g---------------~~vl~~sl------E~s~~~l~ 112 (315)
T 3bh0_A 57 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMS---DND---------------DVVNLHSL------EMGKKENI 112 (315)
T ss_dssp HHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHH---TTT---------------CEEEEEES------SSCHHHHH
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH---HcC---------------CeEEEEEC------CCCHHHHH
Confidence 3455556689999999999999999999888874211 001 11233321 12332221
Q ss_pred HHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHH
Q 001400 924 LFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARA 1003 (1085)
Q Consensus 924 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEPtsgLD~~~ 1003 (1085)
. ++......+++..+.+.. ..||.++++|+..|...+.++++++.|+|...+
T Consensus 113 ~------------------R~~~~~~~i~~~~l~~~~------~~l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~~---- 164 (315)
T 3bh0_A 113 K------------------RLIVTAGSINAQKIKAAR------RDFASEDWGKLSMAIGEISNSNINIFDKAGQSV---- 164 (315)
T ss_dssp H------------------HHHHHHTTCCHHHHHSCH------HHHCSSCHHHHHHHHHHHHTSCEEEECCSCCBH----
T ss_pred H------------------HHHHHHcCCCHHHHhcCC------CCCCHHHHHHHHHHHHHHhCCCEEEECCCCCCH----
Confidence 1 000000001111111100 027888899999988888888888888886443
Q ss_pred HHHHHHHHHHHHHC-Cce--EEEEec
Q 001400 1004 AAIVMRTVRNIVNT-GRT--IVCTIH 1026 (1085)
Q Consensus 1004 ~~~i~~~l~~~~~~-g~t--vi~~~H 1026 (1085)
..+...++++.++ |.. +|++-|
T Consensus 165 -~~i~~~i~~l~~~~~~~~~lVVID~ 189 (315)
T 3bh0_A 165 -NYIWSKTRQTKRKNPGKRVIVMIDY 189 (315)
T ss_dssp -HHHHHHHHHHHHTSSSCCEEEEEEC
T ss_pred -HHHHHHHHHHHHhcCCCCeEEEEeC
Confidence 2355555665443 666 777755
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=97.11 E-value=0.003 Score=72.11 Aligned_cols=28 Identities=32% Similarity=0.337 Sum_probs=24.8
Q ss_pred CCe--EEEEeCCCCCChhHHHHHHHhhhCC
Q 001400 160 PSR--LTLLLGPPSSGKTTLLLALAGRLGH 187 (1085)
Q Consensus 160 ~G~--~~~llGp~GsGKSTLL~~L~G~l~~ 187 (1085)
++. .++|.||+|+|||||++.+++.+.+
T Consensus 41 ~~~~~~~li~G~~G~GKTtl~~~l~~~~~~ 70 (389)
T 1fnn_A 41 GHHYPRATLLGRPGTGKTVTLRKLWELYKD 70 (389)
T ss_dssp TSSCCEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHHhh
Confidence 445 8999999999999999999998765
|
| >2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* | Back alignment and structure |
|---|
Probab=97.09 E-value=0.00028 Score=82.64 Aligned_cols=68 Identities=12% Similarity=0.187 Sum_probs=40.4
Q ss_pred CCCcEeEEeCCCCCCCH-HHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEE-ecCCeEEEecC
Q 001400 323 GPARVLFMDEISNGLDS-STTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVIL-LSEGQIVYQGP 391 (1085)
Q Consensus 323 ~~p~vlllDEptsgLD~-~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~-L~~G~iv~~G~ 391 (1085)
.++++||+||+..-.+. .+...++..+..+.. .+..+|++.+.+..++..+.+++.- +..|.++..++
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~-~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~ 262 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHD-SGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEP 262 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHT-TTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCC
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHH-CCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCC
Confidence 38899999999887764 667778888877653 3456666554444433222222222 34455544443
|
| >3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=97.06 E-value=0.00019 Score=75.00 Aligned_cols=28 Identities=32% Similarity=0.472 Sum_probs=25.6
Q ss_pred eCCeEEEEEccCCCChhHHHhhhhCCCC
Q 001400 853 RPGVLTALVGVSGAGKTTLMDVLAGRKT 880 (1085)
Q Consensus 853 ~~Ge~~al~G~nGaGKSTLl~~l~g~~~ 880 (1085)
++|++++|+||||||||||++.|++...
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 5799999999999999999999998654
|
| >1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A* | Back alignment and structure |
|---|
Probab=97.06 E-value=0.0003 Score=69.43 Aligned_cols=32 Identities=31% Similarity=0.433 Sum_probs=25.8
Q ss_pred cceeeEeCCeEEEEeCCCCCChhHHHHHHHhhh
Q 001400 153 DLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRL 185 (1085)
Q Consensus 153 ~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l 185 (1085)
+.++.+.+| +++|+|||||||||+|.+|.-.+
T Consensus 16 ~~~i~f~~g-~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEcCCC-eEEEECCCCCCHHHHHHHHHHHH
Confidence 344556555 99999999999999999998544
|
| >1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A | Back alignment and structure |
|---|
Probab=97.05 E-value=6.7e-05 Score=85.58 Aligned_cols=142 Identities=13% Similarity=0.076 Sum_probs=77.7
Q ss_pred EEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCChhcccceEEEEccCCCC-CCCCCHHH
Q 001400 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIH-SPGLTVLE 921 (1085)
Q Consensus 843 ~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gy~~Q~~~~-~~~~tv~e 921 (1085)
.+|+++++.+++|++++|+||||||||||+++|+|.. .|.+.....+. ..+...+|+++|...+ +...+...
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~-----~g~~~~~~~~~--~~~~~~lg~~~q~~~~l~dd~~~~~ 229 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC-----GGKALNVNLPL--DRLNFELGVAIDQFLVVFEDVKGTG 229 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH-----CCEEECCSSCT--TTHHHHHGGGTTCSCEEETTCCCST
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc-----CCcEEEEeccc--hhHHHHHHHhcchhHHHHHHHHHHH
Confidence 4678999999999999999999999999999999843 35554412111 1111124556665432 12222111
Q ss_pred HHHHhhhhc-CCCcccHHHHHHHHHHHHHH---cCCCc-cc---ccccC----CCCCCCCCHHHHHHHHHHHHHhcCCCE
Q 001400 922 SLLFSAWLR-LPSEIELETQRAFVEEVMEL---VELTS-LS---GALIG----LPGINGLSTEQRKRLTIAVELVANPSI 989 (1085)
Q Consensus 922 ~l~~~~~~~-~~~~~~~~~~~~~~~~~l~~---~~l~~-~~---~~~~~----~~~~~~LS~Gqrqrl~iA~aL~~~p~i 989 (1085)
++ .+ .... ........+...++- +.+.. .. +.+.. ......+++|.++|+..+++++.+|++
T Consensus 230 ~~-----~r~l~~~-~~~~~~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg~ld~~~~~l~~~~~~rl~~~~~l~~~pDL 303 (377)
T 1svm_A 230 GE-----SRDLPSG-QGINNLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMNEYSVPKTLQARFVKQIDFRPKDYL 303 (377)
T ss_dssp TT-----TTTCCCC-SHHHHHHTTHHHHHCSSCEEECCSSSCCEEECCCCEEEEECSCCCCHHHHTTEEEEEECCCCHHH
T ss_pred HH-----Hhhcccc-CcchHHHHHHHHhcCCCeEeeccCchhhHHHhhcCcccChhHHhhcHHHHHHHhhhhccCCCCCe
Confidence 10 01 0000 000001112223320 00110 00 11000 001245889999999998888899998
Q ss_pred EE-EeCCCC
Q 001400 990 VF-MDEPTS 997 (1085)
Q Consensus 990 ll-lDEPts 997 (1085)
++ ||+|+.
T Consensus 304 liyLd~~~~ 312 (377)
T 1svm_A 304 KHCLERSEF 312 (377)
T ss_dssp HHHHHTCTH
T ss_pred EEEEeCCHH
Confidence 76 999987
|
| >1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A* | Back alignment and structure |
|---|
Probab=96.98 E-value=0.0003 Score=69.41 Aligned_cols=28 Identities=29% Similarity=0.717 Sum_probs=23.0
Q ss_pred eeEEEeCCeEEEEEccCCCChhHHHhhhh
Q 001400 848 VTGAFRPGVLTALVGVSGAGKTTLMDVLA 876 (1085)
Q Consensus 848 vs~~i~~Ge~~al~G~nGaGKSTLl~~l~ 876 (1085)
.++.+.+| +++|+|||||||||++++|.
T Consensus 17 ~~i~f~~g-~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 17 TVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEcCCC-eEEEECCCCCCHHHHHHHHH
Confidence 34455554 89999999999999999986
|
| >2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=96.94 E-value=0.00015 Score=81.96 Aligned_cols=47 Identities=23% Similarity=0.230 Sum_probs=39.3
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEE
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITY 197 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~ 197 (1085)
..+++++++.+++|.+++|+|+||||||||++.|+|.+.+. .|+|.+
T Consensus 43 ~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~---~~~v~v 89 (341)
T 2p67_A 43 TQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIRE---GLKVAV 89 (341)
T ss_dssp HHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHT---TCCEEE
T ss_pred HHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhc---CCeEEE
Confidence 35788888889999999999999999999999999987543 455544
|
| >4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* | Back alignment and structure |
|---|
Probab=96.89 E-value=0.0044 Score=68.56 Aligned_cols=28 Identities=43% Similarity=0.520 Sum_probs=24.8
Q ss_pred CCeEEEEeCCCCCChhHHHHHHHhhhCC
Q 001400 160 PSRLTLLLGPPSSGKTTLLLALAGRLGH 187 (1085)
Q Consensus 160 ~G~~~~llGp~GsGKSTLL~~L~G~l~~ 187 (1085)
|...++|.||||+||||+.++|++.+..
T Consensus 46 ~~~~~ll~G~~GtGKt~la~~la~~~~~ 73 (311)
T 4fcw_A 46 PIGSFLFLGPTGVGKTELAKTLAATLFD 73 (311)
T ss_dssp CSEEEEEESCSSSSHHHHHHHHHHHHHS
T ss_pred CceEEEEECCCCcCHHHHHHHHHHHHcC
Confidence 4568999999999999999999998754
|
| >4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A | Back alignment and structure |
|---|
Probab=96.88 E-value=0.00049 Score=73.08 Aligned_cols=37 Identities=30% Similarity=0.277 Sum_probs=27.4
Q ss_pred ecccceeeEe---CCeEEEEeCCCCCChhHHHHHHHhhhC
Q 001400 150 ILDDLSGIIR---PSRLTLLLGPPSSGKTTLLLALAGRLG 186 (1085)
Q Consensus 150 iL~~vs~~i~---~G~~~~llGp~GsGKSTLL~~L~G~l~ 186 (1085)
=|.++++.+. +|.+++|.||+||||||+++.|+..+.
T Consensus 12 ~~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 12 DLGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp --------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 4677777776 999999999999999999999999885
|
| >2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* | Back alignment and structure |
|---|
Probab=96.88 E-value=0.00065 Score=79.48 Aligned_cols=71 Identities=15% Similarity=0.215 Sum_probs=47.9
Q ss_pred cCCCEEEEeCCCCCCCH-HHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEE-EecCcEEEEecCCCC
Q 001400 985 ANPSIVFMDEPTSGLDA-RAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLF-MKRGGELIYAGPLGS 1056 (1085)
Q Consensus 985 ~~p~illlDEPtsgLD~-~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~-l~~gG~~~~~g~~~~ 1056 (1085)
.+|++||+||+..-.+. .++..+...+..+.+.|+.||+++|++..++....+++.- +. .|.++...++..
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~-~g~~i~l~~p~~ 265 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQ-MGLVAKLEPPDE 265 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHH-SSBCCBCCCCCH
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhcc-CCeEEEeCCCCH
Confidence 38999999999887664 6778888999888778899999999854221111122211 22 356666666653
|
| >1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=96.86 E-value=0.00019 Score=74.58 Aligned_cols=41 Identities=20% Similarity=0.161 Sum_probs=31.1
Q ss_pred EeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCcc
Q 001400 852 FRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYP 894 (1085)
Q Consensus 852 i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~ 894 (1085)
.++|++++|+|+||||||||++.|++... ...|.+.+.+.+
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~--~~~~~v~~~~~d 59 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLR--EQGISVCVFHMD 59 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHH--HTTCCEEEEEGG
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHh--hcCCeEEEeccC
Confidence 36799999999999999999999998542 123566655443
|
| >1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* | Back alignment and structure |
|---|
Probab=96.84 E-value=0.0002 Score=75.71 Aligned_cols=37 Identities=38% Similarity=0.444 Sum_probs=29.8
Q ss_pred CeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEE
Q 001400 161 SRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITY 197 (1085)
Q Consensus 161 G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~ 197 (1085)
+.+++|+|||||||||+.+.|++.++-....+|++..
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~ 41 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYR 41 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceee
Confidence 4689999999999999999999987532234677765
|
| >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=96.83 E-value=0.00038 Score=71.78 Aligned_cols=27 Identities=22% Similarity=0.459 Sum_probs=24.6
Q ss_pred eCCeEEEEEccCCCChhHHHhhhhCCC
Q 001400 853 RPGVLTALVGVSGAGKTTLMDVLAGRK 879 (1085)
Q Consensus 853 ~~Ge~~al~G~nGaGKSTLl~~l~g~~ 879 (1085)
.+|++++|+||||||||||++.|++..
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 479999999999999999999999753
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=96.82 E-value=0.002 Score=74.44 Aligned_cols=28 Identities=32% Similarity=0.229 Sum_probs=25.8
Q ss_pred CCeEEEEeCCCCCChhHHHHHHHhhhCC
Q 001400 160 PSRLTLLLGPPSSGKTTLLLALAGRLGH 187 (1085)
Q Consensus 160 ~G~~~~llGp~GsGKSTLL~~L~G~l~~ 187 (1085)
++.+++++||+||||||++..|++.+.+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~ 123 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKK 123 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 6899999999999999999999998854
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.82 E-value=0.00041 Score=78.58 Aligned_cols=40 Identities=23% Similarity=0.264 Sum_probs=32.4
Q ss_pred eCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCcc
Q 001400 159 RPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHG 201 (1085)
Q Consensus 159 ~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~ 201 (1085)
+++..++|+|+||||||||++.|+|.+.+. .|+|.+.+.+
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~---~~~v~V~~~d 111 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTER---GHKLSVLAVD 111 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEEECC
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhc---CCeEEEEeec
Confidence 467899999999999999999999987654 5666665543
|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=96.79 E-value=0.00032 Score=80.12 Aligned_cols=26 Identities=19% Similarity=0.379 Sum_probs=23.0
Q ss_pred eCCeEEEEEccCCCChhHHHhhhhCC
Q 001400 853 RPGVLTALVGVSGAGKTTLMDVLAGR 878 (1085)
Q Consensus 853 ~~Ge~~al~G~nGaGKSTLl~~l~g~ 878 (1085)
.++..+.|.||+|+|||||++.+++.
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 35778999999999999999999874
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* | Back alignment and structure |
|---|
Probab=96.77 E-value=0.0005 Score=69.39 Aligned_cols=37 Identities=24% Similarity=0.367 Sum_probs=30.3
Q ss_pred eCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccC
Q 001400 853 RPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPK 895 (1085)
Q Consensus 853 ~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 895 (1085)
.+|++++|+|+|||||||+.+.|++.. |.+.+++.+.
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~------g~~~i~~d~~ 42 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL------HAAFLDGDFL 42 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH------TCEEEEGGGG
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh------CcEEEeCccc
Confidence 468999999999999999999998742 5667776543
|
| >3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A | Back alignment and structure |
|---|
Probab=96.76 E-value=0.00042 Score=83.35 Aligned_cols=47 Identities=30% Similarity=0.496 Sum_probs=39.2
Q ss_pred eecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECC
Q 001400 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNG 199 (1085)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G 199 (1085)
.+++++++.+ +|+.++|+||||+|||||+++|++.+.+. .|.|.++|
T Consensus 97 ~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~---~~~i~~~~ 143 (543)
T 3m6a_A 97 LAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRK---FVRISLGG 143 (543)
T ss_dssp HHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCE---EEEECCCC
T ss_pred HHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCC---eEEEEecc
Confidence 4667777777 89999999999999999999999998653 67776555
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=96.73 E-value=0.0022 Score=74.21 Aligned_cols=25 Identities=44% Similarity=0.446 Sum_probs=22.9
Q ss_pred CCeEEEEEccCCCChhHHHhhhhCC
Q 001400 854 PGVLTALVGVSGAGKTTLMDVLAGR 878 (1085)
Q Consensus 854 ~Ge~~al~G~nGaGKSTLl~~l~g~ 878 (1085)
++.+++++|++|+||||++..|++.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~ 120 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYF 120 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999999974
|
| >3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=96.73 E-value=6.4e-05 Score=83.74 Aligned_cols=38 Identities=26% Similarity=0.229 Sum_probs=29.8
Q ss_pred eEEeeeeeEEEeCCe------EEEEEccCCCChhHHHhhhhCCC
Q 001400 842 LQLLVNVTGAFRPGV------LTALVGVSGAGKTTLMDVLAGRK 879 (1085)
Q Consensus 842 ~~~L~~vs~~i~~Ge------~~al~G~nGaGKSTLl~~l~g~~ 879 (1085)
.+.|++++..+..++ ++||+|+||||||||+++|.+..
T Consensus 73 ~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll 116 (321)
T 3tqc_A 73 RQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALL 116 (321)
T ss_dssp HHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 344555666665555 99999999999999999999854
|
| >1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* | Back alignment and structure |
|---|
Probab=96.67 E-value=0.0005 Score=71.89 Aligned_cols=41 Identities=24% Similarity=0.267 Sum_probs=33.5
Q ss_pred eEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceee--EEEECCc
Q 001400 157 IIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSG--KITYNGH 200 (1085)
Q Consensus 157 ~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G--~i~~~G~ 200 (1085)
.+++|.+++|+|++||||||+.+.|++.+++. .| .+.++|.
T Consensus 21 ~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~---~g~~~~~~~~d 63 (211)
T 1m7g_A 21 RNQRGLTIWLTGLSASGKSTLAVELEHQLVRD---RRVHAYRLDGD 63 (211)
T ss_dssp HTSSCEEEEEECSTTSSHHHHHHHHHHHHHHH---HCCCEEEECHH
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHHHHhccc---cCCcEEEECCh
Confidence 35689999999999999999999999988632 56 6666653
|
| >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=96.63 E-value=0.00057 Score=68.70 Aligned_cols=26 Identities=38% Similarity=0.340 Sum_probs=23.3
Q ss_pred CCeEEEEEccCCCChhHHHhhhhCCC
Q 001400 854 PGVLTALVGVSGAGKTTLMDVLAGRK 879 (1085)
Q Consensus 854 ~Ge~~al~G~nGaGKSTLl~~l~g~~ 879 (1085)
.|++++|+|+||||||||.++|++..
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999999854
|
| >2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* | Back alignment and structure |
|---|
Probab=96.60 E-value=0.0011 Score=67.31 Aligned_cols=28 Identities=32% Similarity=0.291 Sum_probs=25.4
Q ss_pred eCCeEEEEeCCCCCChhHHHHHHHhhhC
Q 001400 159 RPSRLTLLLGPPSSGKTTLLLALAGRLG 186 (1085)
Q Consensus 159 ~~G~~~~llGp~GsGKSTLL~~L~G~l~ 186 (1085)
++|++++|+|++||||||+++.|++.+.
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~ 30 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLV 30 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4799999999999999999999999874
|
| >3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=96.60 E-value=0.00032 Score=83.91 Aligned_cols=42 Identities=36% Similarity=0.481 Sum_probs=33.4
Q ss_pred EEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeee-EEE-EcCcc
Q 001400 851 AFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEG-DIY-ISGYP 894 (1085)
Q Consensus 851 ~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G-~i~-i~g~~ 894 (1085)
.+++|++++|+|+||||||||+++|+|.... ..| .+. ++|.+
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~--~~G~~i~~lDgD~ 408 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLME--MGGRCVTLLDGDI 408 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHT--TCSSCEEEESSHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhcc--cCCceEEEECCcH
Confidence 3578999999999999999999999996542 234 574 88854
|
| >2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* | Back alignment and structure |
|---|
Probab=96.59 E-value=0.00082 Score=69.91 Aligned_cols=29 Identities=28% Similarity=0.318 Sum_probs=26.3
Q ss_pred EEeCCeEEEEEccCCCChhHHHhhhhCCC
Q 001400 851 AFRPGVLTALVGVSGAGKTTLMDVLAGRK 879 (1085)
Q Consensus 851 ~i~~Ge~~al~G~nGaGKSTLl~~l~g~~ 879 (1085)
.+++|.+++|+|++|||||||.+.|++..
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 56789999999999999999999999854
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=96.52 E-value=0.0022 Score=64.44 Aligned_cols=27 Identities=37% Similarity=0.697 Sum_probs=23.3
Q ss_pred eCCeEEEEEccCCCChhHHHhhhhCCC
Q 001400 853 RPGVLTALVGVSGAGKTTLMDVLAGRK 879 (1085)
Q Consensus 853 ~~Ge~~al~G~nGaGKSTLl~~l~g~~ 879 (1085)
++|..++|+|++|+|||||++.|+|..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 468899999999999999999999853
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=96.51 E-value=0.0022 Score=70.94 Aligned_cols=28 Identities=29% Similarity=0.399 Sum_probs=24.8
Q ss_pred EeCCeEEEEEccCCCChhHHHhhhhCCC
Q 001400 852 FRPGVLTALVGVSGAGKTTLMDVLAGRK 879 (1085)
Q Consensus 852 i~~Ge~~al~G~nGaGKSTLl~~l~g~~ 879 (1085)
++++..+.|.||+|+|||||.++|++..
T Consensus 46 ~~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 46 MTPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp CCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred CCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 4678889999999999999999999743
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=96.50 E-value=0.002 Score=64.82 Aligned_cols=27 Identities=41% Similarity=0.607 Sum_probs=23.3
Q ss_pred eCCeEEEEeCCCCCChhHHHHHHHhhh
Q 001400 159 RPSRLTLLLGPPSSGKTTLLLALAGRL 185 (1085)
Q Consensus 159 ~~G~~~~llGp~GsGKSTLL~~L~G~l 185 (1085)
++|..++|+|+||+|||||++.|+|..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 468899999999999999999999864
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=96.49 E-value=0.0019 Score=75.57 Aligned_cols=71 Identities=17% Similarity=0.208 Sum_probs=39.5
Q ss_pred eEEEEeCCCCCChhHHHHHHHhhhCC---------CCceeeEEEECCccCC---CCCCCceEEEEccCCCCCCCCCHHHH
Q 001400 162 RLTLLLGPPSSGKTTLLLALAGRLGH---------HLQVSGKITYNGHGFK---EFVPPRTSAYVSQQDWQVAEMTVRET 229 (1085)
Q Consensus 162 ~~~~llGp~GsGKSTLL~~L~G~l~~---------~~~~~G~i~~~G~~~~---~~~~~~~~~yv~Q~d~~~~~lTV~E~ 229 (1085)
-.++|+|+||+|||||++.|+|.... .....|.+.++|.++. ....++...+.+|....+..+++.++
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~ 260 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDS 260 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHHHH
Confidence 47999999999999999999997421 0134789999997542 22222333444444333444444555
Q ss_pred HHH
Q 001400 230 LDF 232 (1085)
Q Consensus 230 l~f 232 (1085)
+..
T Consensus 261 i~~ 263 (439)
T 1mky_A 261 IEK 263 (439)
T ss_dssp HHH
T ss_pred Hhh
Confidence 543
|
| >2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} | Back alignment and structure |
|---|
Probab=96.49 E-value=0.0011 Score=68.78 Aligned_cols=29 Identities=21% Similarity=0.324 Sum_probs=26.3
Q ss_pred EeCCeEEEEeCCCCCChhHHHHHHHhhhC
Q 001400 158 IRPSRLTLLLGPPSSGKTTLLLALAGRLG 186 (1085)
Q Consensus 158 i~~G~~~~llGp~GsGKSTLL~~L~G~l~ 186 (1085)
..+|.+++|+||||||||||.+.|+..++
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 46899999999999999999999998764
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.49 E-value=0.014 Score=61.86 Aligned_cols=42 Identities=7% Similarity=0.106 Sum_probs=29.5
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH--CCceEEEEec
Q 001400 985 ANPSIVFMDEPTSGLDARAAAIVMRTVRNIVN--TGRTIVCTIH 1026 (1085)
Q Consensus 985 ~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~--~g~tvi~~~H 1026 (1085)
.+|+++|+..+.+.++......+..+++.+.. ...++|+.+|
T Consensus 111 ~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK 154 (239)
T 3lxx_A 111 PGPHALLLVVPLGRYTEEEHKATEKILKMFGERARSFMILIFTR 154 (239)
T ss_dssp TCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHHHGGGEEEEEEC
T ss_pred CCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhhccceEEEEEeC
Confidence 46899999999888888766666555544322 1258888898
|
| >1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A | Back alignment and structure |
|---|
Probab=96.47 E-value=0.0017 Score=65.69 Aligned_cols=40 Identities=30% Similarity=0.218 Sum_probs=30.6
Q ss_pred eEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCcc
Q 001400 162 RLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHG 201 (1085)
Q Consensus 162 ~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~ 201 (1085)
.+++|+|++|||||||++.|.+.+......-|.|..++++
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~~ 46 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHD 46 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCCc
Confidence 5889999999999999999999865422234777776654
|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=96.47 E-value=0.00085 Score=76.50 Aligned_cols=28 Identities=18% Similarity=0.316 Sum_probs=25.2
Q ss_pred eCCeEEEEeCCCCCChhHHHHHHHhhhC
Q 001400 159 RPSRLTLLLGPPSSGKTTLLLALAGRLG 186 (1085)
Q Consensus 159 ~~G~~~~llGp~GsGKSTLL~~L~G~l~ 186 (1085)
.+++.++|.||+|+|||||++.+++.+.
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~ 70 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLH 70 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 4678999999999999999999998774
|
| >3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A* | Back alignment and structure |
|---|
Probab=96.46 E-value=0.0015 Score=67.96 Aligned_cols=32 Identities=31% Similarity=0.433 Sum_probs=25.5
Q ss_pred cceeeEeCCeEEEEeCCCCCChhHHHHHHHhhh
Q 001400 153 DLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRL 185 (1085)
Q Consensus 153 ~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l 185 (1085)
+.++.+.|| +++|+|||||||||++.+|.-.+
T Consensus 16 ~~~i~f~~~-~~~I~G~NgsGKStil~ai~~~l 47 (203)
T 3qks_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAILVGL 47 (203)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEeCCC-eEEEEcCCCCCHHHHHHHHHHHh
Confidence 344555564 99999999999999999997544
|
| >1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.43 E-value=0.0014 Score=66.75 Aligned_cols=32 Identities=25% Similarity=0.227 Sum_probs=26.6
Q ss_pred cceeeEeCCeEEEEeCCCCCChhHHHHHHHhh
Q 001400 153 DLSGIIRPSRLTLLLGPPSSGKTTLLLALAGR 184 (1085)
Q Consensus 153 ~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~ 184 (1085)
++|+..++|..++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 57788889999999999999999999999976
|
| >2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* | Back alignment and structure |
|---|
Probab=96.39 E-value=0.00062 Score=76.18 Aligned_cols=37 Identities=30% Similarity=0.450 Sum_probs=32.9
Q ss_pred ecccceeeEeCCeE--EEEeCCCCCChhHHHHHHHhhhC
Q 001400 150 ILDDLSGIIRPSRL--TLLLGPPSSGKTTLLLALAGRLG 186 (1085)
Q Consensus 150 iL~~vs~~i~~G~~--~~llGp~GsGKSTLL~~L~G~l~ 186 (1085)
+++.++..+++|+. ++|+|++||||||+.++|++.+.
T Consensus 11 il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 11 VLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp HHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 67777777888888 99999999999999999999874
|
| >2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A | Back alignment and structure |
|---|
Probab=96.38 E-value=0.0032 Score=72.66 Aligned_cols=44 Identities=23% Similarity=0.040 Sum_probs=37.2
Q ss_pred ccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCc
Q 001400 152 DDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGH 200 (1085)
Q Consensus 152 ~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~ 200 (1085)
+++++. +|++++++|++||||||++..|++.+.+. .|+|.+.+.
T Consensus 91 ~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~---g~~Vllvd~ 134 (425)
T 2ffh_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGK---GRRPLLVAA 134 (425)
T ss_dssp CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTT---TCCEEEEEC
T ss_pred ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEeec
Confidence 677887 89999999999999999999999998764 567766553
|
| >3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A* | Back alignment and structure |
|---|
Probab=96.35 E-value=0.0015 Score=67.94 Aligned_cols=28 Identities=25% Similarity=0.599 Sum_probs=22.7
Q ss_pred eeEEEeCCeEEEEEccCCCChhHHHhhhh
Q 001400 848 VTGAFRPGVLTALVGVSGAGKTTLMDVLA 876 (1085)
Q Consensus 848 vs~~i~~Ge~~al~G~nGaGKSTLl~~l~ 876 (1085)
.++.+.+ .+++|+|||||||||++++|.
T Consensus 17 ~~i~f~~-~~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 17 TVVEFKE-GINLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEECCS-EEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEeCC-CeEEEEcCCCCCHHHHHHHHH
Confidence 3445555 489999999999999999875
|
| >2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=96.31 E-value=0.0016 Score=66.42 Aligned_cols=30 Identities=40% Similarity=0.473 Sum_probs=26.9
Q ss_pred EeCCeEEEEeCCCCCChhHHHHHHHhhhCC
Q 001400 158 IRPSRLTLLLGPPSSGKTTLLLALAGRLGH 187 (1085)
Q Consensus 158 i~~G~~~~llGp~GsGKSTLL~~L~G~l~~ 187 (1085)
.++|.+++|+|++||||||+.+.|++.+..
T Consensus 10 ~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~ 39 (186)
T 2yvu_A 10 IEKGIVVWLTGLPGSGKTTIATRLADLLQK 39 (186)
T ss_dssp CSCCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 357899999999999999999999998754
|
| >3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.31 E-value=0.0013 Score=69.90 Aligned_cols=67 Identities=13% Similarity=0.113 Sum_probs=39.1
Q ss_pred chhhhhHHHHHHHHhCCCcEeEEeCCCC-CCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCe
Q 001400 308 SGGQKKRLTTGELLVGPARVLFMDEISN-GLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDD 377 (1085)
Q Consensus 308 SGGqkqRvsia~al~~~p~vlllDEpts-gLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ 377 (1085)
+.|.-.+.. ...+.+.+++++||.-. ++|.......++.+...... -.+++++.+.+.+...++|++
T Consensus 162 Tpg~l~~~l--~~~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~~-~~~il~SAT~~~~~~~~~~~~ 229 (235)
T 3llm_A 162 TVGVLLRKL--EAGIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYPE-VRIVLMSATIDTSMFCEYFFN 229 (235)
T ss_dssp EHHHHHHHH--HHCCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCTT-SEEEEEECSSCCHHHHHHTTS
T ss_pred CHHHHHHHH--HhhhcCCcEEEEECCccCCcchHHHHHHHHHHHhhCCC-CeEEEEecCCCHHHHHHHcCC
Confidence 334444442 23478899999999976 68877665555554443221 134555555665555555553
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* | Back alignment and structure |
|---|
Probab=96.30 E-value=0.0024 Score=65.22 Aligned_cols=35 Identities=34% Similarity=0.390 Sum_probs=20.9
Q ss_pred eecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhh
Q 001400 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGR 184 (1085)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~ 184 (1085)
.+++++++..++. .++|+|++|+|||||++.+.+.
T Consensus 12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp ------------C-EEEEEESTTSSHHHHHHHHHHS
T ss_pred HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcC
Confidence 3788999988887 6699999999999999999974
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.29 E-value=0.023 Score=60.21 Aligned_cols=24 Identities=25% Similarity=0.338 Sum_probs=21.4
Q ss_pred EEEEeCCCCCChhHHHHHHHhhhC
Q 001400 163 LTLLLGPPSSGKTTLLLALAGRLG 186 (1085)
Q Consensus 163 ~~~llGp~GsGKSTLL~~L~G~l~ 186 (1085)
.++|+|++|+|||||++.|+|...
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~ 54 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKV 54 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCC
T ss_pred EEEEECCCCCCHHHHHHHHcCCCc
Confidence 579999999999999999998643
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* | Back alignment and structure |
|---|
Probab=96.26 E-value=0.003 Score=64.54 Aligned_cols=50 Identities=24% Similarity=0.315 Sum_probs=28.3
Q ss_pred EEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCC------CCCeeeeEEEEcCc
Q 001400 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRK------TGGIIEGDIYISGY 893 (1085)
Q Consensus 843 ~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~------~~~~~~G~i~i~g~ 893 (1085)
.+++++++..++. .++++|++|+|||||++.+.+.. +.+...+.+.++|.
T Consensus 12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~ 67 (190)
T 1m2o_B 12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNI 67 (190)
T ss_dssp ------------C-EEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCEEEEEEETTE
T ss_pred HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcCCCCccccCCCCCeEEEEECCE
Confidence 4678899888777 78999999999999999999732 22334566666653
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.26 E-value=0.015 Score=63.36 Aligned_cols=29 Identities=45% Similarity=0.673 Sum_probs=25.0
Q ss_pred EeCCeEEEEeCCCCCChhHHHHHHHhhhC
Q 001400 158 IRPSRLTLLLGPPSSGKTTLLLALAGRLG 186 (1085)
Q Consensus 158 i~~G~~~~llGp~GsGKSTLL~~L~G~l~ 186 (1085)
+.++.-++|.||||+|||||+++++..+.
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~~~ 76 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATETN 76 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHHTT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 45666799999999999999999998763
|
| >2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=96.25 E-value=0.0016 Score=70.25 Aligned_cols=39 Identities=21% Similarity=0.221 Sum_probs=31.5
Q ss_pred eEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCc
Q 001400 157 IIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGH 200 (1085)
Q Consensus 157 ~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~ 200 (1085)
..+++.+++|+|+|||||||+.+.|+..++. |.+.++|-
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~~-----~~~~~~~D 66 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQG-----NIVIIDGD 66 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTTT-----CCEEECGG
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcCC-----CcEEEecH
Confidence 4667899999999999999999999988742 34556653
|
| >1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F | Back alignment and structure |
|---|
Probab=96.25 E-value=0.0033 Score=69.30 Aligned_cols=44 Identities=23% Similarity=0.143 Sum_probs=35.7
Q ss_pred cc-ceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECC
Q 001400 152 DD-LSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNG 199 (1085)
Q Consensus 152 ~~-vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G 199 (1085)
++ +++..+ |++++++|++|+||||++..|++.+.+. .|+|.+.+
T Consensus 89 ~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~---g~~v~l~~ 133 (297)
T 1j8m_F 89 EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKK---GFKVGLVG 133 (297)
T ss_dssp CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHT---TCCEEEEE
T ss_pred ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHC---CCeEEEEe
Confidence 45 777776 9999999999999999999999988643 45665544
|
| >3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.25 E-value=0.0012 Score=70.37 Aligned_cols=25 Identities=24% Similarity=0.341 Sum_probs=21.5
Q ss_pred eCCeEEEEEccCCCChhHHHhhhhC
Q 001400 853 RPGVLTALVGVSGAGKTTLMDVLAG 877 (1085)
Q Consensus 853 ~~Ge~~al~G~nGaGKSTLl~~l~g 877 (1085)
..|+.+.++|+|||||||++..+..
T Consensus 74 ~~g~~~~i~g~TGsGKTt~~~~~~~ 98 (235)
T 3llm_A 74 SQNSVVIIRGATGCGKTTQVPQFIL 98 (235)
T ss_dssp HHCSEEEEECCTTSSHHHHHHHHHH
T ss_pred hcCCEEEEEeCCCCCcHHhHHHHHh
Confidence 4689999999999999998877653
|
| >3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=96.24 E-value=0.023 Score=66.24 Aligned_cols=39 Identities=28% Similarity=0.359 Sum_probs=33.1
Q ss_pred ceeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhh
Q 001400 147 KLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRL 185 (1085)
Q Consensus 147 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l 185 (1085)
...-|+.+.+-++||+++.|.|+||+|||||+.-++...
T Consensus 183 G~~~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~~ 221 (444)
T 3bgw_A 183 GFTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNM 221 (444)
T ss_dssp SCHHHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred CcHHHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHHH
Confidence 345677777789999999999999999999988887543
|
| >2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus} | Back alignment and structure |
|---|
Probab=96.24 E-value=0.0029 Score=74.12 Aligned_cols=75 Identities=19% Similarity=0.261 Sum_probs=50.0
Q ss_pred CCCHHHHHHHHHHHHHh--cCCCEEEEeCCCCCCCH----------HHHHHHHHHHHHHHHC-CceEEEEecC-------
Q 001400 968 GLSTEQRKRLTIAVELV--ANPSIVFMDEPTSGLDA----------RAAAIVMRTVRNIVNT-GRTIVCTIHQ------- 1027 (1085)
Q Consensus 968 ~LS~Gqrqrl~iA~aL~--~~p~illlDEPtsgLD~----------~~~~~i~~~l~~~~~~-g~tvi~~~H~------- 1027 (1085)
++|..+- .+.++.+. .+|+++++|..+.-.+. .....+.+.|+.++++ +.+||+++|-
T Consensus 292 ~~s~~~l--~~~~~~l~~~~~~~lIvID~l~~~~~~~~~~~~~~r~~~i~~i~~~Lk~lAke~~v~vi~lsql~r~~e~r 369 (444)
T 2q6t_A 292 DLTLMEV--RARARRLVSQNQVGLIIIDYLQLMSGPGSGKSGENRQQEIAAISRGLKALARELGIPIIALSQLSRAVEAR 369 (444)
T ss_dssp TCBHHHH--HHHHHHHHHHSCCCEEEEECGGGCBCC-------CHHHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGGSS
T ss_pred CCCHHHH--HHHHHHHHHHcCCCEEEEcChhhcCCCcCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccC
Confidence 4677664 34566665 47999999998764332 1234677778887754 8999999982
Q ss_pred ----ccH-------HHHHhcCEEEEEec
Q 001400 1028 ----PSI-------DIFESFDELLFMKR 1044 (1085)
Q Consensus 1028 ----~~~-------~~~~~~d~il~l~~ 1044 (1085)
|.. .+...+|.++.|.+
T Consensus 370 ~~~~p~l~dlr~Sg~ie~~aD~vi~L~r 397 (444)
T 2q6t_A 370 PNKRPMLSDLRESGSIEQDADLVMFIYR 397 (444)
T ss_dssp SSCSCCGGGGGGGCTTGGGCSEEEEEEE
T ss_pred CCCCCChHHhcchhHHHHhCCEEEEEec
Confidence 211 13346899998864
|
| >1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A | Back alignment and structure |
|---|
Probab=96.24 E-value=0.05 Score=61.43 Aligned_cols=30 Identities=40% Similarity=0.541 Sum_probs=26.7
Q ss_pred eeEeCCeEEEEeCCCCCChhHHHHHHHhhh
Q 001400 156 GIIRPSRLTLLLGPPSSGKTTLLLALAGRL 185 (1085)
Q Consensus 156 ~~i~~G~~~~llGp~GsGKSTLL~~L~G~l 185 (1085)
+-+++|+++.|.||||+|||||...++...
T Consensus 58 GGl~~G~ii~I~G~pGsGKTtLal~la~~~ 87 (356)
T 1u94_A 58 GGLPMGRIVEIYGPESSGKTTLTLQVIAAA 87 (356)
T ss_dssp SSEETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 458999999999999999999999888654
|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
Probab=96.19 E-value=0.0062 Score=67.99 Aligned_cols=27 Identities=26% Similarity=0.294 Sum_probs=23.7
Q ss_pred CCeEEEEeCCCCCChhHHHHHHHhhhC
Q 001400 160 PSRLTLLLGPPSSGKTTLLLALAGRLG 186 (1085)
Q Consensus 160 ~G~~~~llGp~GsGKSTLL~~L~G~l~ 186 (1085)
++..++|.||+|+|||||++++++.+.
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~ 62 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAK 62 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHH
Confidence 356789999999999999999998764
|
| >4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A | Back alignment and structure |
|---|
Probab=96.16 E-value=0.0021 Score=68.21 Aligned_cols=35 Identities=26% Similarity=0.333 Sum_probs=25.5
Q ss_pred eeeeeEEEe---CCeEEEEEccCCCChhHHHhhhhCCC
Q 001400 845 LVNVTGAFR---PGVLTALVGVSGAGKTTLMDVLAGRK 879 (1085)
Q Consensus 845 L~~vs~~i~---~Ge~~al~G~nGaGKSTLl~~l~g~~ 879 (1085)
|.++|+.+. +|.+++|.|++||||||+++.|+...
T Consensus 13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l 50 (229)
T 4eaq_A 13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRL 50 (229)
T ss_dssp -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 446666665 89999999999999999999999754
|
| >2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=96.16 E-value=0.0003 Score=79.53 Aligned_cols=37 Identities=24% Similarity=0.325 Sum_probs=32.8
Q ss_pred eEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCC
Q 001400 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGR 878 (1085)
Q Consensus 842 ~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~ 878 (1085)
..+++++++.+.+|.+++|+|++|||||||++.|++.
T Consensus 43 ~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~ 79 (341)
T 2p67_A 43 TQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGML 79 (341)
T ss_dssp HHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHH
T ss_pred HHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 3466788888899999999999999999999999874
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* | Back alignment and structure |
|---|
Probab=96.14 E-value=0.0012 Score=67.97 Aligned_cols=34 Identities=32% Similarity=0.433 Sum_probs=30.3
Q ss_pred eecccceeeEeCCeEEEEeCCCCCChhHHHHHHHh
Q 001400 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAG 183 (1085)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G 183 (1085)
.+++++|+..++++ ++|+|++|+|||||++.+.+
T Consensus 14 ~~l~~~~~~~~~~k-i~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 14 SVLQFLGLYKKTGK-LVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp HHHHHHTCTTCCEE-EEEEEETTSSHHHHHHHHSC
T ss_pred HHHHHhhccCCCcE-EEEECCCCCCHHHHHHHHhc
Confidence 57888998888885 68999999999999999986
|
| >2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus} | Back alignment and structure |
|---|
Probab=96.07 E-value=0.019 Score=67.21 Aligned_cols=38 Identities=32% Similarity=0.564 Sum_probs=33.4
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhh
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRL 185 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l 185 (1085)
..-|+.+.+-+++|+++.|.|+||+|||||+.-++...
T Consensus 187 ~~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~ 224 (444)
T 2q6t_A 187 FKELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNA 224 (444)
T ss_dssp CHHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CHhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 45678888889999999999999999999999988654
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.04 E-value=0.0013 Score=74.35 Aligned_cols=26 Identities=27% Similarity=0.418 Sum_probs=23.6
Q ss_pred eCCeEEEEEccCCCChhHHHhhhhCC
Q 001400 853 RPGVLTALVGVSGAGKTTLMDVLAGR 878 (1085)
Q Consensus 853 ~~Ge~~al~G~nGaGKSTLl~~l~g~ 878 (1085)
+++.+++|+|++|||||||++.|+|.
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~ 97 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKM 97 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHH
Confidence 35789999999999999999999984
|
| >1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=96.03 E-value=0.0039 Score=67.07 Aligned_cols=45 Identities=36% Similarity=0.541 Sum_probs=30.3
Q ss_pred ecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCcc
Q 001400 150 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHG 201 (1085)
Q Consensus 150 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~ 201 (1085)
.++++++.+++| ++|.||||+|||||+++|++.+... -+.+++.+
T Consensus 36 ~~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~~~-----~~~i~~~~ 80 (257)
T 1lv7_A 36 RFQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAKVP-----FFTISGSD 80 (257)
T ss_dssp GC-----CCCCE--EEEECCTTSCHHHHHHHHHHHHTCC-----EEEECSCS
T ss_pred HHHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcCCC-----EEEEeHHH
Confidence 456666666665 8999999999999999999987531 25556543
|
| >3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.02 E-value=0.0032 Score=63.94 Aligned_cols=27 Identities=37% Similarity=0.571 Sum_probs=24.0
Q ss_pred eCCeEEEEeCCCCCChhHHHHHHHhhh
Q 001400 159 RPSRLTLLLGPPSSGKTTLLLALAGRL 185 (1085)
Q Consensus 159 ~~G~~~~llGp~GsGKSTLL~~L~G~l 185 (1085)
.+|.+++|+|++||||||+.+.|+..+
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999999999765
|
| >3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A | Back alignment and structure |
|---|
Probab=96.01 E-value=0.0023 Score=72.01 Aligned_cols=33 Identities=36% Similarity=0.590 Sum_probs=31.6
Q ss_pred cceeeEeCCeEEEEeCCCCCChhHHHHHHHhhh
Q 001400 153 DLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRL 185 (1085)
Q Consensus 153 ~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l 185 (1085)
|+++.+.+|+.++|+||+|+|||||++.|++..
T Consensus 166 D~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 166 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp HHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred eeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 899999999999999999999999999999875
|
| >3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=96.00 E-value=0.003 Score=65.32 Aligned_cols=25 Identities=24% Similarity=0.308 Sum_probs=23.0
Q ss_pred CeEEEEeCCCCCChhHHHHHHHhhh
Q 001400 161 SRLTLLLGPPSSGKTTLLLALAGRL 185 (1085)
Q Consensus 161 G~~~~llGp~GsGKSTLL~~L~G~l 185 (1085)
..+++|+|+|||||||+.+.|++.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999999876
|
| >2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A* | Back alignment and structure |
|---|
Probab=95.99 E-value=0.019 Score=64.06 Aligned_cols=28 Identities=32% Similarity=0.508 Sum_probs=25.0
Q ss_pred EEEeCCeEEEEEccCCCChhHHHhhhhC
Q 001400 850 GAFRPGVLTALVGVSGAGKTTLMDVLAG 877 (1085)
Q Consensus 850 ~~i~~Ge~~al~G~nGaGKSTLl~~l~g 877 (1085)
+-+++|+++.|.|++|+|||||...++.
T Consensus 93 GGl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 93 GGLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp SSEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999999999987774
|
| >1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A | Back alignment and structure |
|---|
Probab=95.98 E-value=0.013 Score=66.31 Aligned_cols=27 Identities=26% Similarity=0.359 Sum_probs=24.5
Q ss_pred EEeCCeEEEEEccCCCChhHHHhhhhC
Q 001400 851 AFRPGVLTALVGVSGAGKTTLMDVLAG 877 (1085)
Q Consensus 851 ~i~~Ge~~al~G~nGaGKSTLl~~l~g 877 (1085)
-+++|+++.|.|++|+|||||...++.
T Consensus 59 Gl~~G~ii~I~G~pGsGKTtLal~la~ 85 (356)
T 1u94_A 59 GLPMGRIVEIYGPESSGKTTLTLQVIA 85 (356)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999999887774
|
| >2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.97 E-value=0.0034 Score=71.61 Aligned_cols=31 Identities=26% Similarity=0.370 Sum_probs=26.3
Q ss_pred ceeeEeCCeEEEEeCCCCCChhHHHHHHHhh
Q 001400 154 LSGIIRPSRLTLLLGPPSSGKTTLLLALAGR 184 (1085)
Q Consensus 154 vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~ 184 (1085)
+-+.++.|..++|+|+||+|||||+++|+|.
T Consensus 15 l~g~i~~~~kvgIVG~pnvGKSTL~n~Ltg~ 45 (396)
T 2ohf_A 15 IIGRFGTSLKIGIVGLPNVGKSTFFNVLTNS 45 (396)
T ss_dssp -CCCSSSCCCEEEECCSSSSHHHHHHHHHC-
T ss_pred HHhhccCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 4456778889999999999999999999985
|
| >2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* | Back alignment and structure |
|---|
Probab=95.95 E-value=0.0029 Score=64.06 Aligned_cols=39 Identities=33% Similarity=0.341 Sum_probs=29.1
Q ss_pred eCCeEEEEEccCCCChhHHHhhhhCCCCCCeeee--EEEEcCcc
Q 001400 853 RPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEG--DIYISGYP 894 (1085)
Q Consensus 853 ~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G--~i~i~g~~ 894 (1085)
++|++++|+|++||||||+.+.|++.... .| .+.+++..
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~---~g~~~i~~d~~~ 43 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC---HGIPCYTLDGDN 43 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH---TTCCEEEEEHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh---CCCcEEEECChH
Confidence 47999999999999999999999975321 23 45566543
|
| >3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A | Back alignment and structure |
|---|
Probab=95.92 E-value=0.0015 Score=73.53 Aligned_cols=32 Identities=25% Similarity=0.343 Sum_probs=30.2
Q ss_pred eeeEEEeCCeEEEEEccCCCChhHHHhhhhCC
Q 001400 847 NVTGAFRPGVLTALVGVSGAGKTTLMDVLAGR 878 (1085)
Q Consensus 847 ~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~ 878 (1085)
|+++.+.+|+.++|+|++|+|||||++.|++.
T Consensus 166 D~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~ 197 (422)
T 3ice_A 166 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQS 197 (422)
T ss_dssp HHHSCCBTTCEEEEECCSSSSHHHHHHHHHHH
T ss_pred eeeeeecCCcEEEEecCCCCChhHHHHHHHHH
Confidence 78999999999999999999999999999873
|
| >3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A* | Back alignment and structure |
|---|
Probab=95.92 E-value=0.0037 Score=62.41 Aligned_cols=24 Identities=33% Similarity=0.409 Sum_probs=22.1
Q ss_pred EEEEeCCCCCChhHHHHHHHhhhC
Q 001400 163 LTLLLGPPSSGKTTLLLALAGRLG 186 (1085)
Q Consensus 163 ~~~llGp~GsGKSTLL~~L~G~l~ 186 (1085)
+++|.|++||||||+.+.|+..++
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999998764
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=95.88 E-value=0.0059 Score=71.33 Aligned_cols=69 Identities=19% Similarity=0.306 Sum_probs=37.4
Q ss_pred eEEEEEccCCCChhHHHhhhhCCCC----------CCeeeeEEEEcCccCCh---hcccceEEEEccCCCCCCCCCHHHH
Q 001400 856 VLTALVGVSGAGKTTLMDVLAGRKT----------GGIIEGDIYISGYPKRQ---ETFARISGYCEQNDIHSPGLTVLES 922 (1085)
Q Consensus 856 e~~al~G~nGaGKSTLl~~l~g~~~----------~~~~~G~i~i~g~~~~~---~~~~~~~gy~~Q~~~~~~~~tv~e~ 922 (1085)
-.++|+|+||+|||||++.|+|... ..+..|.+.++|.+..- ...++..++.+|....+...+..++
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~ 260 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDS 260 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHHHH
Confidence 3689999999999999999999632 11346888899874311 1122333344344333444444555
Q ss_pred HH
Q 001400 923 LL 924 (1085)
Q Consensus 923 l~ 924 (1085)
+.
T Consensus 261 i~ 262 (439)
T 1mky_A 261 IE 262 (439)
T ss_dssp HH
T ss_pred Hh
Confidence 54
|
| >3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A | Back alignment and structure |
|---|
Probab=95.87 E-value=0.0014 Score=78.64 Aligned_cols=49 Identities=24% Similarity=0.287 Sum_probs=38.1
Q ss_pred EEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCcc
Q 001400 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYP 894 (1085)
Q Consensus 843 ~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~ 894 (1085)
.+++++++.+ +|+.++|+||||+|||||+++|++... ...|.|.++|..
T Consensus 97 ~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~--~~~~~i~~~~~~ 145 (543)
T 3m6a_A 97 LAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLG--RKFVRISLGGVR 145 (543)
T ss_dssp HHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHT--CEEEEECCCC--
T ss_pred HHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcC--CCeEEEEecccc
Confidence 3556777777 899999999999999999999998643 346777777643
|
| >1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* | Back alignment and structure |
|---|
Probab=95.87 E-value=0.0043 Score=62.44 Aligned_cols=26 Identities=31% Similarity=0.496 Sum_probs=23.7
Q ss_pred CeEEEEeCCCCCChhHHHHHHHhhhC
Q 001400 161 SRLTLLLGPPSSGKTTLLLALAGRLG 186 (1085)
Q Consensus 161 G~~~~llGp~GsGKSTLL~~L~G~l~ 186 (1085)
|.++.|.|+|||||||+.+.|+..++
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 57899999999999999999998764
|
| >2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A* | Back alignment and structure |
|---|
Probab=95.85 E-value=0.043 Score=57.58 Aligned_cols=53 Identities=21% Similarity=0.281 Sum_probs=38.3
Q ss_pred CCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEe---------cChhHHHhhcCeEEEec
Q 001400 324 PARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLL---------QPAPEAYELFDDVILLS 382 (1085)
Q Consensus 324 ~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~---------q~~~~~~~~~D~ii~L~ 382 (1085)
+++++++||.-. |+.. +++.++.+++. +..+|++=+ .+++++..++|.|.-|.
T Consensus 89 ~~dvViIDEaQ~-l~~~----~ve~l~~L~~~-gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDDR----ICEVANILAEN-GFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TCCEEEECSGGG-SCTH----HHHHHHHHHHT-TCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEecCcc-CcHH----HHHHHHHHHhC-CCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 589999999964 6643 45555666653 556666554 56788999999999986
|
| >1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* | Back alignment and structure |
|---|
Probab=95.83 E-value=0.003 Score=66.41 Aligned_cols=57 Identities=23% Similarity=0.160 Sum_probs=38.7
Q ss_pred CeEEEEEccCCCChhHHHhhhhCCCC-CCeeeeEEEE--------cCccCCh----hcccceEEEEccCC
Q 001400 855 GVLTALVGVSGAGKTTLMDVLAGRKT-GGIIEGDIYI--------SGYPKRQ----ETFARISGYCEQND 911 (1085)
Q Consensus 855 Ge~~al~G~nGaGKSTLl~~l~g~~~-~~~~~G~i~i--------~g~~~~~----~~~~~~~gy~~Q~~ 911 (1085)
+.+++|+|++||||||+.++|++... .-+..|++.. +|.++.. ...++.+|+++|++
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 74 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVST 74 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeecc
Confidence 56899999999999999999997431 1144577766 5655431 12445567777753
|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
Probab=95.82 E-value=0.008 Score=67.05 Aligned_cols=45 Identities=7% Similarity=0.117 Sum_probs=34.4
Q ss_pred hcCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHHCCceEEEEecCc
Q 001400 984 VANPSIVFMDEPTS-GLDARAAAIVMRTVRNIVNTGRTIVCTIHQP 1028 (1085)
Q Consensus 984 ~~~p~illlDEPts-gLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~ 1028 (1085)
..+|.+||+||+.. .-+..++..+...+..+.+.|..+|++++.+
T Consensus 96 ~~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~ 141 (324)
T 1l8q_A 96 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRH 141 (324)
T ss_dssp HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred hcCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 35799999999866 2344778888889888777777788877754
|
| >2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=95.82 E-value=0.0037 Score=64.61 Aligned_cols=21 Identities=24% Similarity=0.189 Sum_probs=20.1
Q ss_pred EEEEeCCCCCChhHHHHHHHh
Q 001400 163 LTLLLGPPSSGKTTLLLALAG 183 (1085)
Q Consensus 163 ~~~llGp~GsGKSTLL~~L~G 183 (1085)
.++|+|+|||||||+.+.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 589999999999999999998
|
| >2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.79 E-value=0.00083 Score=76.42 Aligned_cols=31 Identities=19% Similarity=0.294 Sum_probs=27.3
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhh
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGR 184 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~ 184 (1085)
+.+++++++.| +|+|++|+|||||++.|.|.
T Consensus 30 k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~ 60 (361)
T 2qag_A 30 KSVKKGFEFTL------MVVGESGLGKSTLINSLFLT 60 (361)
T ss_dssp HHHHHCCEECE------EECCCTTSCHHHHHHHHTTC
T ss_pred eeecCCCCEEE------EEEcCCCCCHHHHHHHHhCC
Confidence 35788888877 99999999999999999875
|
| >1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=95.75 E-value=0.0019 Score=72.78 Aligned_cols=40 Identities=28% Similarity=0.541 Sum_probs=34.8
Q ss_pred eeecccceeeEeCCeE--EEEeCCCCCChhHHHHHHHhhhCC
Q 001400 148 LTILDDLSGIIRPSRL--TLLLGPPSSGKTTLLLALAGRLGH 187 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~--~~llGp~GsGKSTLL~~L~G~l~~ 187 (1085)
..+++.++..++.|++ +++.||||+||||+++++++.+.+
T Consensus 31 ~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~ 72 (340)
T 1sxj_C 31 NEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYG 72 (340)
T ss_dssp HHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcC
Confidence 3477778888888988 999999999999999999998754
|
| >2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.74 E-value=0.00053 Score=78.02 Aligned_cols=33 Identities=30% Similarity=0.350 Sum_probs=27.3
Q ss_pred CeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCC
Q 001400 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRK 879 (1085)
Q Consensus 841 ~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~ 879 (1085)
++.+++++++.| +|+|++|+|||||++.|.|..
T Consensus 29 ~k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~ 61 (361)
T 2qag_A 29 RKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTD 61 (361)
T ss_dssp THHHHHCCEECE------EECCCTTSCHHHHHHHHTTCC
T ss_pred CeeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCC
Confidence 344667888877 999999999999999998753
|
| >1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.72 E-value=0.0039 Score=63.45 Aligned_cols=32 Identities=22% Similarity=0.396 Sum_probs=25.9
Q ss_pred eeeEEEeCCeEEEEEccCCCChhHHHhhhhCC
Q 001400 847 NVTGAFRPGVLTALVGVSGAGKTTLMDVLAGR 878 (1085)
Q Consensus 847 ~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~ 878 (1085)
++|+...+|..++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 57778888999999999999999999999853
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=95.70 E-value=0.012 Score=64.30 Aligned_cols=26 Identities=35% Similarity=0.414 Sum_probs=22.6
Q ss_pred eCCeEEEEEccCCCChhHHHhhhhCC
Q 001400 853 RPGVLTALVGVSGAGKTTLMDVLAGR 878 (1085)
Q Consensus 853 ~~Ge~~al~G~nGaGKSTLl~~l~g~ 878 (1085)
.++.-+.|.||+|+|||||.+.|+..
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 45667899999999999999999864
|
| >3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A* | Back alignment and structure |
|---|
Probab=95.70 E-value=0.0051 Score=65.11 Aligned_cols=25 Identities=32% Similarity=0.518 Sum_probs=22.7
Q ss_pred eEEEEeCCCCCChhHHHHHHHhhhC
Q 001400 162 RLTLLLGPPSSGKTTLLLALAGRLG 186 (1085)
Q Consensus 162 ~~~~llGp~GsGKSTLL~~L~G~l~ 186 (1085)
-+++|.||+||||||+.+.|+..++
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~lg 34 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARALG 34 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4799999999999999999998763
|
| >2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} | Back alignment and structure |
|---|
Probab=95.70 E-value=0.0038 Score=64.73 Aligned_cols=28 Identities=25% Similarity=0.245 Sum_probs=24.6
Q ss_pred EeCCeEEEEEccCCCChhHHHhhhhCCC
Q 001400 852 FRPGVLTALVGVSGAGKTTLMDVLAGRK 879 (1085)
Q Consensus 852 i~~Ge~~al~G~nGaGKSTLl~~l~g~~ 879 (1085)
..+|.+++|+|++|||||||.+.|+...
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 3578999999999999999999998643
|
| >1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.65 E-value=0.0057 Score=64.99 Aligned_cols=29 Identities=31% Similarity=0.379 Sum_probs=25.5
Q ss_pred EeCCeEEEEeCCCCCChhHHHHHHHhhhC
Q 001400 158 IRPSRLTLLLGPPSSGKTTLLLALAGRLG 186 (1085)
Q Consensus 158 i~~G~~~~llGp~GsGKSTLL~~L~G~l~ 186 (1085)
-++|.+++|+|++||||||+.+.|++.++
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~lg 41 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKDFG 41 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHHHC
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 45788999999999999999999998764
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X | Back alignment and structure |
|---|
Probab=95.63 E-value=0.0041 Score=68.77 Aligned_cols=64 Identities=9% Similarity=0.021 Sum_probs=39.7
Q ss_pred CchhhhhHHHHHHHHh--CCCcEeEEeCCCCCCCHHH-HHHHHHHHHHHHhccCC-EEEEEEecChhHHHhhcCe
Q 001400 307 ISGGQKKRLTTGELLV--GPARVLFMDEISNGLDSST-TYQIIKYLKHSTRALDG-TTVISLLQPAPEAYELFDD 377 (1085)
Q Consensus 307 LSGGqkqRvsia~al~--~~p~vlllDEptsgLD~~~-~~~i~~~l~~~~~~~~~-t~ii~~~q~~~~~~~~~D~ 377 (1085)
+|+|++ .+++.+. ..|.++++ +.+|... ...+.+.+.+++...+. .++.+..+....+.+++|.
T Consensus 101 ~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~~v~~l~~~ 168 (301)
T 1ega_A 101 WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAI 168 (301)
T ss_dssp CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTTTHHHHHHH
T ss_pred CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCCCCHHHHHHH
Confidence 888886 5667776 78999998 7888876 56677777777654332 2333233333344444443
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* | Back alignment and structure |
|---|
Probab=95.61 E-value=0.0023 Score=65.97 Aligned_cols=48 Identities=27% Similarity=0.359 Sum_probs=34.4
Q ss_pred EeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCC------CCCeeeeEEEEcC
Q 001400 844 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRK------TGGIIEGDIYISG 892 (1085)
Q Consensus 844 ~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~------~~~~~~G~i~i~g 892 (1085)
+++++|+..+++ .++|+|++|+|||||++.+.+.. +.+...+.+.++|
T Consensus 15 ~l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~ 68 (198)
T 1f6b_A 15 VLQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAG 68 (198)
T ss_dssp HHHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSCC------CCCCCSCEEEEETT
T ss_pred HHHHhhccCCCc-EEEEECCCCCCHHHHHHHHhcCCCCccCCCCCceeEEEEECC
Confidence 566777777766 57999999999999999998732 1123345666655
|
| >2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} | Back alignment and structure |
|---|
Probab=95.60 E-value=0.0058 Score=62.31 Aligned_cols=27 Identities=44% Similarity=0.613 Sum_probs=24.4
Q ss_pred eCCeEEEEeCCCCCChhHHHHHHHhhh
Q 001400 159 RPSRLTLLLGPPSSGKTTLLLALAGRL 185 (1085)
Q Consensus 159 ~~G~~~~llGp~GsGKSTLL~~L~G~l 185 (1085)
+++.++.|.|++||||||+.+.|+..+
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 467899999999999999999998766
|
| >3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.59 E-value=0.09 Score=59.42 Aligned_cols=27 Identities=37% Similarity=0.632 Sum_probs=23.9
Q ss_pred eCCeEEEEeCCCCCChhHHHHHHHhhh
Q 001400 159 RPSRLTLLLGPPSSGKTTLLLALAGRL 185 (1085)
Q Consensus 159 ~~G~~~~llGp~GsGKSTLL~~L~G~l 185 (1085)
++..-++|.||+|+|||||.++|+..+
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 456679999999999999999999875
|
| >2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A | Back alignment and structure |
|---|
Probab=95.48 E-value=0.007 Score=65.12 Aligned_cols=25 Identities=40% Similarity=0.684 Sum_probs=22.6
Q ss_pred eEEEEeCCCCCChhHHHHHHHhhhC
Q 001400 162 RLTLLLGPPSSGKTTLLLALAGRLG 186 (1085)
Q Consensus 162 ~~~~llGp~GsGKSTLL~~L~G~l~ 186 (1085)
.+++|+||||||||||.+.|++.++
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCC
Confidence 3789999999999999999998764
|
| >2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=95.46 E-value=0.0049 Score=63.70 Aligned_cols=21 Identities=29% Similarity=0.468 Sum_probs=20.0
Q ss_pred EEEEEccCCCChhHHHhhhhC
Q 001400 857 LTALVGVSGAGKTTLMDVLAG 877 (1085)
Q Consensus 857 ~~al~G~nGaGKSTLl~~l~g 877 (1085)
+++|+|+|||||||+.+.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 589999999999999999997
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=95.45 E-value=0.0065 Score=60.34 Aligned_cols=23 Identities=39% Similarity=0.609 Sum_probs=20.9
Q ss_pred EEEEeCCCCCChhHHHHHHHhhh
Q 001400 163 LTLLLGPPSSGKTTLLLALAGRL 185 (1085)
Q Consensus 163 ~~~llGp~GsGKSTLL~~L~G~l 185 (1085)
.++|+|+||+|||||++.|+|..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999853
|
| >1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B* | Back alignment and structure |
|---|
Probab=95.44 E-value=0.0084 Score=65.77 Aligned_cols=27 Identities=37% Similarity=0.402 Sum_probs=24.3
Q ss_pred eCCeEEEEeCCCCCChhHHHHHHHhhh
Q 001400 159 RPSRLTLLLGPPSSGKTTLLLALAGRL 185 (1085)
Q Consensus 159 ~~G~~~~llGp~GsGKSTLL~~L~G~l 185 (1085)
..+.++.|.|||||||||+.+.|+..+
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 457899999999999999999998765
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=95.44 E-value=0.0066 Score=67.12 Aligned_cols=30 Identities=40% Similarity=0.576 Sum_probs=26.9
Q ss_pred eEeCCeEEEEeCCCCCChhHHHHHHHhhhC
Q 001400 157 IIRPSRLTLLLGPPSSGKTTLLLALAGRLG 186 (1085)
Q Consensus 157 ~i~~G~~~~llGp~GsGKSTLL~~L~G~l~ 186 (1085)
.++++.-++|.||||+|||||.++|++.+.
T Consensus 45 ~~~~~~~vLL~Gp~GtGKT~la~ala~~~~ 74 (301)
T 3cf0_A 45 GMTPSKGVLFYGPPGCGKTLLAKAIANECQ 74 (301)
T ss_dssp CCCCCSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred CCCCCceEEEECCCCcCHHHHHHHHHHHhC
Confidence 467888999999999999999999998763
|
| >1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A | Back alignment and structure |
|---|
Probab=95.43 E-value=0.0074 Score=61.34 Aligned_cols=26 Identities=23% Similarity=0.331 Sum_probs=23.6
Q ss_pred CeEEEEeCCCCCChhHHHHHHHhhhC
Q 001400 161 SRLTLLLGPPSSGKTTLLLALAGRLG 186 (1085)
Q Consensus 161 G~~~~llGp~GsGKSTLL~~L~G~l~ 186 (1085)
|.+++|.|++||||||+.+.|+-.++
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 67899999999999999999998764
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=95.42 E-value=0.012 Score=59.34 Aligned_cols=22 Identities=36% Similarity=0.659 Sum_probs=20.6
Q ss_pred EEEEEccCCCChhHHHhhhhCC
Q 001400 857 LTALVGVSGAGKTTLMDVLAGR 878 (1085)
Q Consensus 857 ~~al~G~nGaGKSTLl~~l~g~ 878 (1085)
.++|+|++|+|||||++.|+|.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999984
|
| >2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A* | Back alignment and structure |
|---|
Probab=95.41 E-value=0.015 Score=61.00 Aligned_cols=52 Identities=15% Similarity=0.286 Sum_probs=40.4
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCceEEEEec---------CccHHHHHhcCEEEEE
Q 001400 986 NPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIH---------QPSIDIFESFDELLFM 1042 (1085)
Q Consensus 986 ~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H---------~~~~~~~~~~d~il~l 1042 (1085)
+|+++++||.-. |+.. +.+.++.+++.|.+||++-| ..+..+...+|+|.-|
T Consensus 89 ~~dvViIDEaQ~-l~~~----~ve~l~~L~~~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el 149 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDDR----ICEVANILAENGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKL 149 (223)
T ss_dssp TCCEEEECSGGG-SCTH----HHHHHHHHHHTTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEEC
T ss_pred CCCEEEEecCcc-CcHH----HHHHHHHHHhCCCeEEEEeccccccCCcCCCcHHHHHHhheEeec
Confidence 589999999964 6643 45566777777999999999 4556788889998874
|
| >3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=95.38 E-value=0.0081 Score=60.88 Aligned_cols=27 Identities=26% Similarity=0.162 Sum_probs=23.4
Q ss_pred CCeEEEEeCCCCCChhHHHHHHHhhhC
Q 001400 160 PSRLTLLLGPPSSGKTTLLLALAGRLG 186 (1085)
Q Consensus 160 ~G~~~~llGp~GsGKSTLL~~L~G~l~ 186 (1085)
++..++|+|++||||||+.+.|+..++
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l~ 30 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLTK 30 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 466899999999999999999998763
|
| >1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* | Back alignment and structure |
|---|
Probab=95.34 E-value=0.0034 Score=65.50 Aligned_cols=40 Identities=25% Similarity=0.238 Sum_probs=30.9
Q ss_pred EeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeee--EEEEcCc
Q 001400 852 FRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEG--DIYISGY 893 (1085)
Q Consensus 852 i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G--~i~i~g~ 893 (1085)
+++|.+++|+|++||||||+.+.|++... +..| .+.++|.
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~l~~~l~--~~~g~~~~~~~~d 63 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVELEHQLV--RDRRVHAYRLDGD 63 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHHHHH--HHHCCCEEEECHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHhc--cccCCcEEEECCh
Confidence 46799999999999999999999997542 1235 6667653
|
| >2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=95.31 E-value=0.0095 Score=61.62 Aligned_cols=28 Identities=21% Similarity=0.178 Sum_probs=25.1
Q ss_pred CCeEEEEeCCCCCChhHHHHHHHhhhCC
Q 001400 160 PSRLTLLLGPPSSGKTTLLLALAGRLGH 187 (1085)
Q Consensus 160 ~G~~~~llGp~GsGKSTLL~~L~G~l~~ 187 (1085)
+|.+++|.|++||||||+.+.|+..++.
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 5778999999999999999999988754
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=95.31 E-value=0.0074 Score=59.92 Aligned_cols=23 Identities=35% Similarity=0.642 Sum_probs=21.1
Q ss_pred EEEEEccCCCChhHHHhhhhCCC
Q 001400 857 LTALVGVSGAGKTTLMDVLAGRK 879 (1085)
Q Consensus 857 ~~al~G~nGaGKSTLl~~l~g~~ 879 (1085)
+++|+|++|+|||||++.|+|..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999853
|
| >3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.28 E-value=0.062 Score=60.74 Aligned_cols=25 Identities=32% Similarity=0.434 Sum_probs=21.8
Q ss_pred CCeEEEEEccCCCChhHHHhhhhCC
Q 001400 854 PGVLTALVGVSGAGKTTLMDVLAGR 878 (1085)
Q Consensus 854 ~Ge~~al~G~nGaGKSTLl~~l~g~ 878 (1085)
+..-+.|.||+|+|||||.+.|+..
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~ 140 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQ 140 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 4556899999999999999999864
|
| >2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A* | Back alignment and structure |
|---|
Probab=95.27 E-value=0.061 Score=60.77 Aligned_cols=28 Identities=39% Similarity=0.604 Sum_probs=24.3
Q ss_pred EeCCeEEEEeCCCCCChhHHHHHHHhhh
Q 001400 158 IRPSRLTLLLGPPSSGKTTLLLALAGRL 185 (1085)
Q Consensus 158 i~~G~~~~llGp~GsGKSTLL~~L~G~l 185 (1085)
.++..-++|.||+|+|||||.++++..+
T Consensus 81 ~~~~~~iLL~GppGtGKT~la~ala~~~ 108 (355)
T 2qp9_X 81 RKPTSGILLYGPPGTGKSYLAKAVATEA 108 (355)
T ss_dssp CCCCCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCCceEEEECCCCCcHHHHHHHHHHHh
Confidence 3556678999999999999999999876
|
| >1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=95.25 E-value=0.0087 Score=60.19 Aligned_cols=24 Identities=42% Similarity=0.444 Sum_probs=21.7
Q ss_pred EEEEeCCCCCChhHHHHHHHhhhC
Q 001400 163 LTLLLGPPSSGKTTLLLALAGRLG 186 (1085)
Q Consensus 163 ~~~llGp~GsGKSTLL~~L~G~l~ 186 (1085)
.++|+|+|||||||+.+.|+..++
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 488999999999999999998763
|
| >2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A* | Back alignment and structure |
|---|
Probab=95.24 E-value=0.0092 Score=61.32 Aligned_cols=24 Identities=25% Similarity=0.511 Sum_probs=22.1
Q ss_pred EEEEeCCCCCChhHHHHHHHhhhC
Q 001400 163 LTLLLGPPSSGKTTLLLALAGRLG 186 (1085)
Q Consensus 163 ~~~llGp~GsGKSTLL~~L~G~l~ 186 (1085)
+++|.|++||||||+.+.|+..+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 589999999999999999998874
|
| >2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A* | Back alignment and structure |
|---|
Probab=95.15 E-value=0.0098 Score=61.20 Aligned_cols=27 Identities=26% Similarity=0.336 Sum_probs=24.3
Q ss_pred eCCeEEEEeCCCCCChhHHHHHHHhhh
Q 001400 159 RPSRLTLLLGPPSSGKTTLLLALAGRL 185 (1085)
Q Consensus 159 ~~G~~~~llGp~GsGKSTLL~~L~G~l 185 (1085)
.+|.+++|.|++||||||+.+.|+..+
T Consensus 2 ~~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 2 SRGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 367899999999999999999999765
|
| >3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A | Back alignment and structure |
|---|
Probab=95.14 E-value=0.0098 Score=60.07 Aligned_cols=27 Identities=41% Similarity=0.366 Sum_probs=23.8
Q ss_pred eCCeEEEEeCCCCCChhHHHHHHHhhh
Q 001400 159 RPSRLTLLLGPPSSGKTTLLLALAGRL 185 (1085)
Q Consensus 159 ~~G~~~~llGp~GsGKSTLL~~L~G~l 185 (1085)
..+..++|.|++||||||+.+.|+-.+
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 356789999999999999999999765
|
| >2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=95.10 E-value=0.024 Score=64.32 Aligned_cols=25 Identities=28% Similarity=0.441 Sum_probs=22.0
Q ss_pred CCeEEEEEccCCCChhHHHhhhhCC
Q 001400 854 PGVLTALVGVSGAGKTTLMDVLAGR 878 (1085)
Q Consensus 854 ~Ge~~al~G~nGaGKSTLl~~l~g~ 878 (1085)
.+..+.|.||+|+|||||++.++..
T Consensus 43 ~~~~vll~G~~G~GKT~l~~~~~~~ 67 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVARLVLRR 67 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHH
Confidence 4567899999999999999999864
|
| >2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A | Back alignment and structure |
|---|
Probab=95.10 E-value=0.01 Score=60.60 Aligned_cols=27 Identities=22% Similarity=0.450 Sum_probs=24.2
Q ss_pred eCCeEEEEeCCCCCChhHHHHHHHhhh
Q 001400 159 RPSRLTLLLGPPSSGKTTLLLALAGRL 185 (1085)
Q Consensus 159 ~~G~~~~llGp~GsGKSTLL~~L~G~l 185 (1085)
+++.+++|.|++||||||+.+.|+..+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 457799999999999999999999766
|
| >1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A | Back alignment and structure |
|---|
Probab=95.08 E-value=0.0096 Score=60.74 Aligned_cols=25 Identities=36% Similarity=0.549 Sum_probs=21.6
Q ss_pred eEEEEeCCCCCChhHHHHHHHhhhC
Q 001400 162 RLTLLLGPPSSGKTTLLLALAGRLG 186 (1085)
Q Consensus 162 ~~~~llGp~GsGKSTLL~~L~G~l~ 186 (1085)
+.+.|+||||||||||++.|....+
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCC
Confidence 3578999999999999999987654
|
| >1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=95.05 E-value=0.012 Score=58.83 Aligned_cols=26 Identities=27% Similarity=0.249 Sum_probs=23.1
Q ss_pred eEEEEeCCCCCChhHHHHHHHhhhCC
Q 001400 162 RLTLLLGPPSSGKTTLLLALAGRLGH 187 (1085)
Q Consensus 162 ~~~~llGp~GsGKSTLL~~L~G~l~~ 187 (1085)
.+++|+|++|||||||+..|+..+..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~ 30 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVR 30 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHh
Confidence 37899999999999999999988753
|
| >2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.04 E-value=0.0055 Score=62.84 Aligned_cols=29 Identities=31% Similarity=0.600 Sum_probs=25.0
Q ss_pred EeCCeEEEEeCCCCCChhHHHHHHHhhhC
Q 001400 158 IRPSRLTLLLGPPSSGKTTLLLALAGRLG 186 (1085)
Q Consensus 158 i~~G~~~~llGp~GsGKSTLL~~L~G~l~ 186 (1085)
++++.+++|.|++||||||+.+.|+..++
T Consensus 9 ~~~~~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 9 LRKCKIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp HHHSCEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34567899999999999999999997763
|
| >1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A* | Back alignment and structure |
|---|
Probab=95.00 E-value=0.013 Score=61.42 Aligned_cols=28 Identities=36% Similarity=0.504 Sum_probs=24.1
Q ss_pred eCCeEEEEeCCCCCChhHHHHHHHhhhC
Q 001400 159 RPSRLTLLLGPPSSGKTTLLLALAGRLG 186 (1085)
Q Consensus 159 ~~G~~~~llGp~GsGKSTLL~~L~G~l~ 186 (1085)
++|..++|+|++||||||+.+.|+..+.
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4577899999999999999999997763
|
| >1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A | Back alignment and structure |
|---|
Probab=94.98 E-value=0.011 Score=59.74 Aligned_cols=38 Identities=37% Similarity=0.338 Sum_probs=27.7
Q ss_pred eEEEEEccCCCChhHHHhhhhCCCC-CCeeeeEEEEcCc
Q 001400 856 VLTALVGVSGAGKTTLMDVLAGRKT-GGIIEGDIYISGY 893 (1085)
Q Consensus 856 e~~al~G~nGaGKSTLl~~l~g~~~-~~~~~G~i~i~g~ 893 (1085)
.+++|+|++|||||||++.|.+... .+...|.|..++.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~ 45 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHH 45 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCC
Confidence 4789999999999999999987421 1223466666543
|
| >1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2 | Back alignment and structure |
|---|
Probab=94.97 E-value=0.29 Score=57.94 Aligned_cols=38 Identities=13% Similarity=0.006 Sum_probs=32.0
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhh
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRL 185 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l 185 (1085)
..-|+.+.+-+++|+++.|.|+||+|||||+.-++-..
T Consensus 229 ~~~LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~~~ 266 (503)
T 1q57_A 229 CTGINDKTLGARGGEVIMVTSGSGMVMSTFVRQQALQW 266 (503)
T ss_dssp CTTHHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHHHH
T ss_pred hhhhhHhhcccCCCeEEEEeecCCCCchHHHHHHHHHH
Confidence 45577776679999999999999999999988887544
|
| >2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.96 E-value=0.0089 Score=68.16 Aligned_cols=43 Identities=21% Similarity=0.356 Sum_probs=32.0
Q ss_pred EEeCCeEEEEEccCCCChhHHHhhhhCCCC---------CCeeeeEEEEcCc
Q 001400 851 AFRPGVLTALVGVSGAGKTTLMDVLAGRKT---------GGIIEGDIYISGY 893 (1085)
Q Consensus 851 ~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~---------~~~~~G~i~i~g~ 893 (1085)
.++.|..++|+|++|+|||||++.|+|... -.+..|.+.+.+.
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~ 69 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDE 69 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCH
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCc
Confidence 456788999999999999999999998521 1244677776653
|
| >3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A | Back alignment and structure |
|---|
Probab=94.92 E-value=0.012 Score=58.69 Aligned_cols=19 Identities=37% Similarity=0.593 Sum_probs=18.3
Q ss_pred EEEEeCCCCCChhHHHHHH
Q 001400 163 LTLLLGPPSSGKTTLLLAL 181 (1085)
Q Consensus 163 ~~~llGp~GsGKSTLL~~L 181 (1085)
+++|.||+||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 7899999999999999999
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=94.91 E-value=0.012 Score=59.41 Aligned_cols=22 Identities=41% Similarity=0.682 Sum_probs=20.5
Q ss_pred EEEEeCCCCCChhHHHHHHHhh
Q 001400 163 LTLLLGPPSSGKTTLLLALAGR 184 (1085)
Q Consensus 163 ~~~llGp~GsGKSTLL~~L~G~ 184 (1085)
.++|+|++|+|||||++.|+|.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999984
|
| >2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A* | Back alignment and structure |
|---|
Probab=94.89 E-value=0.013 Score=60.75 Aligned_cols=28 Identities=25% Similarity=0.292 Sum_probs=25.0
Q ss_pred eCCeEEEEeCCCCCChhHHHHHHHhhhC
Q 001400 159 RPSRLTLLLGPPSSGKTTLLLALAGRLG 186 (1085)
Q Consensus 159 ~~G~~~~llGp~GsGKSTLL~~L~G~l~ 186 (1085)
++|.+++|.|++||||||+.+.|+-.++
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l~ 35 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYLK 35 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 5688999999999999999999997653
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=94.88 E-value=0.01 Score=60.04 Aligned_cols=22 Identities=41% Similarity=0.537 Sum_probs=20.3
Q ss_pred EEEEeCCCCCChhHHHHHHHhh
Q 001400 163 LTLLLGPPSSGKTTLLLALAGR 184 (1085)
Q Consensus 163 ~~~llGp~GsGKSTLL~~L~G~ 184 (1085)
.++|+|++|+|||||++.++|.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4799999999999999999875
|
| >1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=94.88 E-value=0.013 Score=58.79 Aligned_cols=22 Identities=32% Similarity=0.539 Sum_probs=20.4
Q ss_pred eEEEEeCCCCCChhHHHHHHHh
Q 001400 162 RLTLLLGPPSSGKTTLLLALAG 183 (1085)
Q Consensus 162 ~~~~llGp~GsGKSTLL~~L~G 183 (1085)
.+++|.|+|||||||+.+.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4789999999999999999986
|
| >2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* | Back alignment and structure |
|---|
Probab=94.86 E-value=0.0024 Score=71.44 Aligned_cols=35 Identities=26% Similarity=0.371 Sum_probs=30.2
Q ss_pred EeeeeeEEEeCCeE--EEEEccCCCChhHHHhhhhCC
Q 001400 844 LLVNVTGAFRPGVL--TALVGVSGAGKTTLMDVLAGR 878 (1085)
Q Consensus 844 ~L~~vs~~i~~Ge~--~al~G~nGaGKSTLl~~l~g~ 878 (1085)
+++.+++.+++|+. ++|+|++||||||+.++|++.
T Consensus 11 il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~ 47 (359)
T 2ga8_A 11 VLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQI 47 (359)
T ss_dssp HHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHH
Confidence 45677777888888 999999999999999999873
|
| >2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=94.84 E-value=0.012 Score=59.69 Aligned_cols=27 Identities=37% Similarity=0.560 Sum_probs=24.4
Q ss_pred eCCeEEEEEccCCCChhHHHhhhhCCC
Q 001400 853 RPGVLTALVGVSGAGKTTLMDVLAGRK 879 (1085)
Q Consensus 853 ~~Ge~~al~G~nGaGKSTLl~~l~g~~ 879 (1085)
.+|.++.|+|++||||||+.+.|++..
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l 37 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLL 37 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 578999999999999999999998743
|
| >1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=94.83 E-value=0.016 Score=59.04 Aligned_cols=26 Identities=23% Similarity=0.416 Sum_probs=22.6
Q ss_pred CCeEEEEeCCCCCChhHHHHHHHhhh
Q 001400 160 PSRLTLLLGPPSSGKTTLLLALAGRL 185 (1085)
Q Consensus 160 ~G~~~~llGp~GsGKSTLL~~L~G~l 185 (1085)
++.+++|.|++||||||+.+.|+-.+
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999998765
|
| >3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* | Back alignment and structure |
|---|
Probab=94.81 E-value=0.043 Score=73.12 Aligned_cols=30 Identities=37% Similarity=0.456 Sum_probs=27.5
Q ss_pred eEeCCeEEEEeCCCCCChhHHHHHHHhhhC
Q 001400 157 IIRPSRLTLLLGPPSSGKTTLLLALAGRLG 186 (1085)
Q Consensus 157 ~i~~G~~~~llGp~GsGKSTLL~~L~G~l~ 186 (1085)
-+++|+++.|.||||+|||||+..++....
T Consensus 728 Gl~~G~lVlI~G~PG~GKTtLal~lA~~aa 757 (1706)
T 3cmw_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQ 757 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CcCCCceEEEECCCCCCcHHHHHHHHHHHH
Confidence 599999999999999999999999987653
|
| >2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=94.79 E-value=0.012 Score=59.26 Aligned_cols=27 Identities=33% Similarity=0.362 Sum_probs=19.3
Q ss_pred CCeEEEEeCCCCCChhHHHHHHHhhhC
Q 001400 160 PSRLTLLLGPPSSGKTTLLLALAGRLG 186 (1085)
Q Consensus 160 ~G~~~~llGp~GsGKSTLL~~L~G~l~ 186 (1085)
++.++.|.|++||||||+.+.|+..++
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHST
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 467899999999999999999987653
|
| >3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=94.76 E-value=0.0091 Score=61.59 Aligned_cols=24 Identities=29% Similarity=0.466 Sum_probs=21.5
Q ss_pred CeEEEEEccCCCChhHHHhhhhCC
Q 001400 855 GVLTALVGVSGAGKTTLMDVLAGR 878 (1085)
Q Consensus 855 Ge~~al~G~nGaGKSTLl~~l~g~ 878 (1085)
..+++|+|++||||||+.+.|++.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999999864
|
| >3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=94.75 E-value=0.012 Score=59.59 Aligned_cols=25 Identities=36% Similarity=0.425 Sum_probs=22.2
Q ss_pred eCCeEEEEEccCCCChhHHHhhhhC
Q 001400 853 RPGVLTALVGVSGAGKTTLMDVLAG 877 (1085)
Q Consensus 853 ~~Ge~~al~G~nGaGKSTLl~~l~g 877 (1085)
.+|.+++|+|++||||||+.+.|+.
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3578999999999999999999984
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=94.74 E-value=0.013 Score=59.22 Aligned_cols=22 Identities=41% Similarity=0.587 Sum_probs=20.5
Q ss_pred EEEEEccCCCChhHHHhhhhCC
Q 001400 857 LTALVGVSGAGKTTLMDVLAGR 878 (1085)
Q Consensus 857 ~~al~G~nGaGKSTLl~~l~g~ 878 (1085)
+++|+|++|+|||||++.++|.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999984
|
| >1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A | Back alignment and structure |
|---|
Probab=94.74 E-value=0.016 Score=60.53 Aligned_cols=24 Identities=33% Similarity=0.325 Sum_probs=21.8
Q ss_pred CCeEEEEeCCCCCChhHHHHHHHh
Q 001400 160 PSRLTLLLGPPSSGKTTLLLALAG 183 (1085)
Q Consensus 160 ~G~~~~llGp~GsGKSTLL~~L~G 183 (1085)
.+.+++|.|++||||||+.+.|+.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999986
|
| >1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A* | Back alignment and structure |
|---|
Probab=94.71 E-value=0.015 Score=60.37 Aligned_cols=28 Identities=32% Similarity=0.325 Sum_probs=25.1
Q ss_pred eCCeEEEEeCCCCCChhHHHHHHHhhhC
Q 001400 159 RPSRLTLLLGPPSSGKTTLLLALAGRLG 186 (1085)
Q Consensus 159 ~~G~~~~llGp~GsGKSTLL~~L~G~l~ 186 (1085)
++|.+++|.|++||||||+.+.|+-.++
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5688999999999999999999997763
|
| >2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A | Back alignment and structure |
|---|
Probab=94.69 E-value=0.0061 Score=70.33 Aligned_cols=46 Identities=26% Similarity=0.109 Sum_probs=35.6
Q ss_pred eeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccC
Q 001400 846 VNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPK 895 (1085)
Q Consensus 846 ~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 895 (1085)
+++++. +|++++++|+||+||||++..|++.... ..+.+.+.+.+.
T Consensus 91 ~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~--~g~~Vllvd~D~ 136 (425)
T 2ffh_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKG--KGRRPLLVAADT 136 (425)
T ss_dssp CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHT--TTCCEEEEECCS
T ss_pred ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHH--cCCeEEEeeccc
Confidence 467777 8999999999999999999999985431 235676665543
|
| >1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A* | Back alignment and structure |
|---|
Probab=94.65 E-value=0.0075 Score=62.63 Aligned_cols=25 Identities=32% Similarity=0.452 Sum_probs=22.7
Q ss_pred EEEEeCCCCCChhHHHHHHHhhhCC
Q 001400 163 LTLLLGPPSSGKTTLLLALAGRLGH 187 (1085)
Q Consensus 163 ~~~llGp~GsGKSTLL~~L~G~l~~ 187 (1085)
+++|.|++||||||+++.|+..+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 6899999999999999999988753
|
| >1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=94.62 E-value=0.016 Score=58.84 Aligned_cols=24 Identities=29% Similarity=0.505 Sum_probs=22.0
Q ss_pred EEEEeCCCCCChhHHHHHHHhhhC
Q 001400 163 LTLLLGPPSSGKTTLLLALAGRLG 186 (1085)
Q Consensus 163 ~~~llGp~GsGKSTLL~~L~G~l~ 186 (1085)
+++|.|++||||||+.+.|+-.++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999998774
|
| >1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14 | Back alignment and structure |
|---|
Probab=94.60 E-value=0.076 Score=54.29 Aligned_cols=53 Identities=17% Similarity=0.288 Sum_probs=38.8
Q ss_pred CCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEe---------cChhHHHhhcCeEEEec
Q 001400 324 PARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLL---------QPAPEAYELFDDVILLS 382 (1085)
Q Consensus 324 ~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~---------q~~~~~~~~~D~ii~L~ 382 (1085)
+.+++++||.-- +|... ++.++.++.. +..+|++-+ .+++++.+++|.|.-|.
T Consensus 81 ~~dvViIDEaqf-l~~~~----v~~l~~l~~~-~~~Vi~~Gl~~df~~~~F~~~~~L~~~AD~V~el~ 142 (191)
T 1xx6_A 81 DTEVIAIDEVQF-FDDEI----VEIVNKIAES-GRRVICAGLDMDFRGKPFGPIPELMAIAEFVDKIQ 142 (191)
T ss_dssp TCSEEEECSGGG-SCTHH----HHHHHHHHHT-TCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred cCCEEEEECCCC-CCHHH----HHHHHHHHhC-CCEEEEEecccccccCcCccHHHHHHHcccEEeee
Confidence 579999999644 66442 5566666654 567777655 67789999999998876
|
| >2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A* | Back alignment and structure |
|---|
Probab=94.58 E-value=0.17 Score=52.33 Aligned_cols=54 Identities=15% Similarity=0.256 Sum_probs=41.2
Q ss_pred CCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEe---------cChhHHHhhcCeEEEecC
Q 001400 324 PARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLL---------QPAPEAYELFDDVILLSE 383 (1085)
Q Consensus 324 ~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~---------q~~~~~~~~~D~ii~L~~ 383 (1085)
+.+++++||.-- +|... ++.++.++.. +..+|++=+ .+++++.+++|.|.-|..
T Consensus 101 ~~dvViIDEaQF-~~~~~----V~~l~~l~~~-~~~Vi~~Gl~~DF~~~~F~~~~~Ll~~AD~Vtel~a 163 (214)
T 2j9r_A 101 EMDVIAIDEVQF-FDGDI----VEVVQVLANR-GYRVIVAGLDQDFRGLPFGQVPQLMAIAEHVTKLQA 163 (214)
T ss_dssp SCCEEEECCGGG-SCTTH----HHHHHHHHHT-TCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECCC
T ss_pred CCCEEEEECccc-CCHHH----HHHHHHHhhC-CCEEEEEecccccccCccccHHHHHHhcccEEeeee
Confidence 579999999876 66442 3666666553 667777777 789999999999999863
|
| >3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni} | Back alignment and structure |
|---|
Probab=94.55 E-value=0.017 Score=60.34 Aligned_cols=29 Identities=28% Similarity=0.471 Sum_probs=24.9
Q ss_pred EeCCeEEEEeCCCCCChhHHHHHHHhhhC
Q 001400 158 IRPSRLTLLLGPPSSGKTTLLLALAGRLG 186 (1085)
Q Consensus 158 i~~G~~~~llGp~GsGKSTLL~~L~G~l~ 186 (1085)
++...++.|+|||||||+|..+.|+-.+.
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa~~L~~~~g 54 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQCEKLVQKFH 54 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHHHHHHHHHC
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHC
Confidence 45567899999999999999999997763
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1085 | ||||
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 6e-27 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 3e-20 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 8e-27 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 3e-17 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 3e-26 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 1e-17 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 5e-26 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 2e-23 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 9e-25 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 1e-17 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 4e-24 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 3e-18 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 8e-24 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 4e-16 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 9e-24 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 9e-17 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 2e-23 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 3e-20 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 4e-23 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 4e-14 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 6e-23 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 2e-18 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 2e-22 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 6e-15 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 7e-22 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 1e-14 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 4e-21 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 2e-18 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 5e-21 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 5e-17 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 6e-20 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 4e-16 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 8e-19 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 1e-14 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 1e-18 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 4e-16 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 1e-15 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 3e-14 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 2e-14 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 3e-10 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 1e-07 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 0.002 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 0.003 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 3e-07 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 1e-04 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 0.001 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 9e-07 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 0.004 | |
| d1n0wa_ | 242 | c.37.1.11 (A:) DNA repair protein Rad51, catalytic | 8e-05 | |
| d1cr2a_ | 277 | c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), | 9e-05 | |
| d1szpa2 | 251 | c.37.1.11 (A:145-395) DNA repair protein Rad51, ca | 2e-04 | |
| d1nlfa_ | 274 | c.37.1.11 (A:) Hexameric replicative helicase repA | 8e-04 | |
| d2i1qa2 | 258 | c.37.1.11 (A:65-322) DNA repair protein Rad51, cat | 0.001 | |
| d1w1wa_ | 427 | c.37.1.12 (A:) Smc head domain {Baker's yeast (Sac | 0.002 | |
| d2bdta1 | 176 | c.37.1.25 (A:1-176) Hypothetical protein BH3686 {B | 0.002 | |
| d1tf7a2 | 242 | c.37.1.11 (A:256-497) Circadian clock protein KaiC | 0.002 | |
| d1tf7a1 | 242 | c.37.1.11 (A:14-255) Circadian clock protein KaiC | 0.002 |
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 108 bits (272), Expect = 6e-27
Identities = 52/221 (23%), Positives = 91/221 (41%), Gaps = 13/221 (5%)
Query: 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGYPKRQET 899
+ L V+ + G +T ++G +G+GK+TL++V+ G + G + + + E
Sbjct: 17 FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAEL 76
Query: 900 FARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIE-------LETQRAFVEEVMELVE 952
+ Q +TVLE+LL S + + + VE+ +++E
Sbjct: 77 YHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILE 136
Query: 953 LTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVR 1012
LS G LS Q K + I L+ NP ++ MDEP +G+ A + V
Sbjct: 137 FLKLSHLYDRKAG--ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVL 194
Query: 1013 NIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGP 1053
+ G T + H+ + D L M G++I G
Sbjct: 195 ELKAKGITFLIIEHRLD-IVLNYIDHLYVMFN-GQIIAEGR 233
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 89.6 bits (222), Expect = 3e-20
Identities = 49/249 (19%), Positives = 88/249 (35%), Gaps = 35/249 (14%)
Query: 147 KLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV 206
+ LD +S + +TL++GP SGK+TL+ + G L G++ +
Sbjct: 16 EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD---EGRVYFENKDITNKE 72
Query: 207 PP----RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDE 262
P Q + EMTV E L C G + + ++ ++
Sbjct: 73 PAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVE--- 129
Query: 263 DLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLV 322
I++ L L D G+ +SGGQ K + G L+
Sbjct: 130 ------------------KAFKILEFLKLSHLYDRKAGE-----LSGGQMKLVEIGRALM 166
Query: 323 GPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLS 382
+++ MDE G+ + I ++ G T + + D + ++
Sbjct: 167 TNPKMIVMDEPIAGVAPGLAHDIFNHVLELKA--KGITFLIIEHRLDIVLNYIDHLYVMF 224
Query: 383 EGQIVYQGP 391
GQI+ +G
Sbjct: 225 NGQIIAEGR 233
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 107 bits (269), Expect = 8e-27
Identities = 54/219 (24%), Positives = 103/219 (47%), Gaps = 12/219 (5%)
Query: 833 KQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIE-GDIY 889
K + E+ + L NV + G +++G SG+GK+T+++++ + T G + +I
Sbjct: 9 KTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIK 68
Query: 890 ISGYPKRQETFARIS--GYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEV 947
+ + T R G+ Q P LT LE++ + + E +R E
Sbjct: 69 TNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALEC 128
Query: 948 MELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIV 1007
+++ EL P N LS Q++R+ IA L NP I+ D+PT LD++ +
Sbjct: 129 LKMAEL--EERFANHKP--NQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKI 184
Query: 1008 MRTVRNIV-NTGRTIVCTIHQPSIDIFESFDELLFMKRG 1045
M+ ++ + G+T+V H I++ + ++++K G
Sbjct: 185 MQLLKKLNEEDGKTVVVVTH--DINVARFGERIIYLKDG 221
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 79.9 bits (197), Expect = 3e-17
Identities = 44/261 (16%), Positives = 94/261 (36%), Gaps = 49/261 (18%)
Query: 139 RIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYN 198
+ Y+ + L +++ I+ ++GP SGK+T+L + G++ +
Sbjct: 9 KTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPT---EGEVYID 65
Query: 199 GH-----GFKEFVPPRTS--AYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELAR 251
E R +V QQ + +T E ++ + G+ ++ R
Sbjct: 66 NIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGA----MSGEER 121
Query: 252 REKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGL-DTCADTLVGDEMLKGISGG 310
R++ +K+ L + A+ +SGG
Sbjct: 122 RKR---------------------------ALECLKMAELEERFANHKPNQ-----LSGG 149
Query: 311 QKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPE 370
Q++R+ L ++ D+ + LDS T +I++ LK G TV+ ++
Sbjct: 150 QQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEED-GKTVV-VVTHDIN 207
Query: 371 AYELFDDVILLSEGQIVYQGP 391
+ +I L +G++ +
Sbjct: 208 VARFGERIIYLKDGEVEREEK 228
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 106 bits (266), Expect = 3e-26
Identities = 46/214 (21%), Positives = 78/214 (36%), Gaps = 12/214 (5%)
Query: 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGYPKRQET 899
+ + + G + L+G +GAGKTT + +AG R G I +
Sbjct: 19 IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVI 78
Query: 900 FARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGA 959
+ P LTV E+L+ A+ R E +R L
Sbjct: 79 NRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKE---GIKRDLEWIFSLFPRLKERLKQ 135
Query: 960 LIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGR 1019
L G LS +++ L I L++ P ++ MDEP+ GL + V ++ I G
Sbjct: 136 LGG-----TLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGT 190
Query: 1020 TIVCTIHQPSIDIFESFDELLFMKRGGELIYAGP 1053
TI+ + ++ G+++ G
Sbjct: 191 TILLVEQNAL-GALKVAHYGYVLET-GQIVLEGK 222
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 81.5 bits (201), Expect = 1e-17
Identities = 51/271 (18%), Positives = 98/271 (36%), Gaps = 47/271 (17%)
Query: 130 MTEALL--RQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRL-G 186
+++ +L + L +Y G + + + + ++ L+G +GKTT L A+AG +
Sbjct: 2 VSDIVLEVQSLHVYYG---AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRA 58
Query: 187 HHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMI 246
++ + + A V + E+TV E L +
Sbjct: 59 QKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKE----- 113
Query: 247 TELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKG 306
+ + L L G
Sbjct: 114 ---GIKRDLE--------------------------WIFSLFPRLKERLKQLGGT----- 139
Query: 307 ISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQ 366
+SGG+++ L G L+ ++L MDE S GL ++ + ++ + +GTT++ + Q
Sbjct: 140 LSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQ--EGTTILLVEQ 197
Query: 367 PAPEAYELFDDVILLSEGQIVYQGPRVSVLD 397
A A ++ +L GQIV +G +LD
Sbjct: 198 NALGALKVAHYGYVLETGQIVLEGKASELLD 228
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 105 bits (264), Expect = 5e-26
Identities = 50/214 (23%), Positives = 85/214 (39%), Gaps = 14/214 (6%)
Query: 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ-ETF 900
+ + + G L+G SG GKTT + ++AG + EG IY
Sbjct: 19 FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEE--PTEGRIYFGDRDVTYLPPK 76
Query: 901 ARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGAL 960
R Q+ P +TV E++ F ++ + + V EL+++ L
Sbjct: 77 DRNISMVFQSYAVWPHMTVYENIAFPLKIK---KFPKDEIDKRVRWAAELLQIEELLNRY 133
Query: 961 IGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVN-TGR 1019
LS QR+R+ +A +V P ++ MDEP S LDA+ + ++ +
Sbjct: 134 PA-----QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKV 188
Query: 1020 TIVCTIHQPSIDIFESFDELLFMKRGGELIYAGP 1053
T + H + D + M R G+L+ G
Sbjct: 189 TTIYVTHDQV-EAMTMGDRIAVMNR-GQLLQIGS 220
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 97.9 bits (244), Expect = 2e-23
Identities = 63/291 (21%), Positives = 104/291 (35%), Gaps = 55/291 (18%)
Query: 127 IFNMTEALLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLG 186
+ M E L L GN T ++ L+ I+ +LLGP GKTT L +AG
Sbjct: 1 VIKMVEVKLENLTKRFGN---FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEE 57
Query: 187 HHLQVSGKITYNGHGFKEFVPP-RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDM 245
G+I + P R + V Q MTV E + F + +
Sbjct: 58 PT---EGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKD--- 111
Query: 246 ITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLK 305
E+ +R V + ++L ++ +
Sbjct: 112 --EIDKR-----------------------------VRWAAELLQIEELLNRYPAQ---- 136
Query: 306 GISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLL 365
+SGGQ++R+ +V VL MDE + LD+ + +K + L TT+
Sbjct: 137 -LSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTH 195
Query: 366 QPAPEAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFL 416
EA + D + +++ GQ++ G V + P VA F+
Sbjct: 196 DQV-EAMTMGDRIAVMNRGQLLQIGSPTEV--------YLRPNSVFVATFI 237
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 103 bits (257), Expect = 9e-25
Identities = 42/201 (20%), Positives = 81/201 (40%), Gaps = 19/201 (9%)
Query: 845 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARIS 904
L N+ G + A+ G +G+GKT+L+ ++ G EG I SG R+
Sbjct: 52 LKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELE--ASEGIIKHSG---------RV- 99
Query: 905 GYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLP 964
+C Q PG T+ E+++F E ++ + ++ + ++G
Sbjct: 100 SFCSQFSWIMPG-TIKENIIFGVSYD---EYRYKSVVKACQLQQDITKFAEQDNTVLG-E 154
Query: 965 GINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCT 1024
G LS QR R+++A + + + +D P LD V + + +T +
Sbjct: 155 GGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILV 214
Query: 1025 IHQPSIDIFESFDELLFMKRG 1045
+ D++L + +G
Sbjct: 215 TSKME--HLRKADKILILHQG 233
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 82.3 bits (203), Expect = 1e-17
Identities = 44/242 (18%), Positives = 84/242 (34%), Gaps = 52/242 (21%)
Query: 150 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPR 209
+L +++ I + + G SGKT+LL+ + G L G I ++G
Sbjct: 51 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEAS---EGIIKHSGR--------- 98
Query: 210 TSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMK 269
++ SQ W + T++E + F K ++ D
Sbjct: 99 -VSFCSQFSW-IMPGTIKENIIFGVSYDEY--------RYKSVVKACQLQQD-------- 140
Query: 270 SFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLF 329
I +T++G+ +SGGQ+ R++ + A +
Sbjct: 141 ------------------ITKFAEQDNTVLGEGG-VTLSGGQRARISLARAVYKDADLYL 181
Query: 330 MDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQ 389
+D LD T Q+ + + + T I L+ E D +++L +G +
Sbjct: 182 LDSPFGYLDVFTEEQVFESCVC--KLMANKTRI-LVTSKMEHLRKADKILILHQGSSYFY 238
Query: 390 GP 391
G
Sbjct: 239 GT 240
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 100 bits (250), Expect = 4e-24
Identities = 47/216 (21%), Positives = 87/216 (40%), Gaps = 14/216 (6%)
Query: 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGYPKRQ 897
+ ++L ++ G + L+G +GAGKTT + +++ + + GI+ +
Sbjct: 13 GKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHE 72
Query: 898 ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLS 957
++ Y + + +E L F A S E+ VE E+ L
Sbjct: 73 --VRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEI---EEMVERATEIAGLGEKI 127
Query: 958 GALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNT 1017
+ S ++L IA L+ NP + +DEPTSGLD A V + ++
Sbjct: 128 KDRVS-----TYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQE 182
Query: 1018 GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGP 1053
G TI+ + H ++ D + + G ++ G
Sbjct: 183 GLTILVSSHNML-EVEFLCDRIALIHN-GTIVETGT 216
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 83.1 bits (205), Expect = 3e-18
Identities = 60/288 (20%), Positives = 99/288 (34%), Gaps = 57/288 (19%)
Query: 135 LRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGK 194
++ LR G + IL +S I + L+GP +GKTT L ++ + SG
Sbjct: 5 VKDLRKRIGKK---EILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPS---SGI 58
Query: 195 ITYNGHGFKEFVPP--RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARR 252
+T G E + +Y+ ++ M E L F S
Sbjct: 59 VTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSS-------EIE 111
Query: 253 EKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQK 312
E VE +I GL V S G
Sbjct: 112 EM---------------------------VERATEIAGLGEKIKDRVS-----TYSKGMV 139
Query: 313 KRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAY 372
++L L+ R+ +DE ++GLD ++ K LK +++ +G T++ E
Sbjct: 140 RKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQ--EGLTILVSSHNMLEVE 197
Query: 373 ELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVT 420
L D + L+ G IV G + K +N+ + +EV
Sbjct: 198 FLCDRIALIHNGTIVETGTVEEL--------KERYKAQNIEEVFEEVV 237
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 99 bits (249), Expect = 8e-24
Identities = 47/226 (20%), Positives = 89/226 (39%), Gaps = 22/226 (9%)
Query: 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGG-IIEGDIYISGYPKRQE 898
++L V+ R G + +++G SG+GK+T + + + + G II I+ +
Sbjct: 15 HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDG 74
Query: 899 TFARIS-----------GYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEV 947
Q+ +TVLE+++ + R +
Sbjct: 75 QLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVME--APIQVLGLSKHDARERALKY 132
Query: 948 MELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIV 1007
+ V + A P LS Q++R++IA L P ++ DEPTS LD V
Sbjct: 133 LAKVGIDER--AQGKYPV--HLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEV 188
Query: 1008 MRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGP 1053
+R ++ + G+T+V H+ ++F+ G++ G
Sbjct: 189 LRIMQQLAEEGKTMVVVTHEMGF-ARHVSSHVIFL-HQGKIEEEGD 232
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 77.2 bits (190), Expect = 4e-16
Identities = 52/299 (17%), Positives = 94/299 (31%), Gaps = 69/299 (23%)
Query: 135 LRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGK 194
+ L G +L +S R + ++G SGK+T L + G
Sbjct: 5 VIDLHKRYGGH---EVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKP---SEGA 58
Query: 195 ITYNGHGFKEFVPP----------------RTSAYVSQQDWQVAEMTVRETLDFAGQCQG 238
I NG V Q + MTV E + A
Sbjct: 59 IIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEA----- 113
Query: 239 VGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTL 298
++ G+ + + + +G+D A
Sbjct: 114 -------------PIQVLGLSKHDARER---------------ALKYLAKVGIDERAQGK 145
Query: 299 VGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDG 358
+ SGGQ++R++ L VL DE ++ LD ++++ ++ +G
Sbjct: 146 YPVHL----SGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAE--EG 199
Query: 359 TTVISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQ 417
T++ + A + VI L +G+I +G V F P+ + FL+
Sbjct: 200 KTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQV--------FGNPQSPRLQQFLK 250
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 99.5 bits (248), Expect = 9e-24
Identities = 51/208 (24%), Positives = 84/208 (40%), Gaps = 15/208 (7%)
Query: 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ET 899
L N+ G ALVG SG+GK+T+ ++ I EG I + G+ R+ +
Sbjct: 29 PALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYD--IDEGHILMDGHDLREYTLAS 86
Query: 900 FARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGA 959
QN +IE + A + M+ + +
Sbjct: 87 LRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIE---EAARMAYAMDFIN--KMDNG 141
Query: 960 LIGLPGING--LSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNT 1017
L + G NG LS QR+R+ IA L+ + I+ +DE TS LD + + + +
Sbjct: 142 LDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDEL-QK 200
Query: 1018 GRTIVCTIHQPSIDIFESFDELLFMKRG 1045
RT + H+ S E DE++ ++ G
Sbjct: 201 NRTSLVIAHRLS--TIEQADEIVVVEDG 226
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 79.1 bits (195), Expect = 9e-17
Identities = 46/253 (18%), Positives = 96/253 (37%), Gaps = 42/253 (16%)
Query: 146 SKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEF 205
++ L +++ I + L+G SGK+T+ + G I +GH +E+
Sbjct: 26 REVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDID---EGHILMDGHDLREY 82
Query: 206 VPP--RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDED 263
R + Q+ + TV + +A ++ ++ ++A
Sbjct: 83 TLASLRNQVALVSQNVHLFNDTVANNIAYAR------TEEYSREQIEEAARMAYAMDF-- 134
Query: 264 LDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVG 323
I +D DT++G E +SGGQ++R+ L+
Sbjct: 135 ------------------------INKMDNGLDTIIG-ENGVLLSGGQRQRIAIARALLR 169
Query: 324 PARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSE 383
+ +L +DE ++ LD+ + I L T + ++ E D+++++ +
Sbjct: 170 DSPILILDEATSALDTESERAIQAALD---ELQKNRTSL-VIAHRLSTIEQADEIVVVED 225
Query: 384 GQIVYQGPRVSVL 396
G IV +G +L
Sbjct: 226 GIIVERGTHSELL 238
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 98.0 bits (244), Expect = 2e-23
Identities = 54/228 (23%), Positives = 91/228 (39%), Gaps = 19/228 (8%)
Query: 833 KQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISG 892
K +Q L NV+ G + ++G SGAGK+TL+ + + EG + + G
Sbjct: 9 KVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER--PTEGSVLVDG 66
Query: 893 Y------PKRQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEE 946
R G Q+ TV ++ L + E+ + V E
Sbjct: 67 QELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEV---KRRVTE 123
Query: 947 VMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAI 1006
++ LV L + LS Q++R+ IA L +NP ++ DE TS LD
Sbjct: 124 LLSLVGLGDKHDSYPS-----NLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRS 178
Query: 1007 VMRTVRNIV-NTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGP 1053
++ +++I G TI+ H+ + + D + + GELI
Sbjct: 179 ILELLKDINRRLGLTILLITHEMDV-VKRICDCVAVI-SNGELIEQDT 224
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 88.8 bits (220), Expect = 3e-20
Identities = 51/283 (18%), Positives = 101/283 (35%), Gaps = 57/283 (20%)
Query: 139 RIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYN 198
+++ + L+++S + ++ ++G +GK+TL+ + G + +
Sbjct: 9 KVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNL---LERPTEGSVLVD 65
Query: 199 GH-----GFKEFVPPRTSAYVSQQDW-QVAEMTVRETLDFAGQCQGVGSKYDMITELARR 252
G E R + Q + ++ TV + + +
Sbjct: 66 GQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKD-------EVK 118
Query: 253 EKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQK 312
+ V ++ ++GL D+ + +SGGQK
Sbjct: 119 RR---------------------------VTELLSLVGLGDKHDSYPSN-----LSGGQK 146
Query: 313 KRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAY 372
+R+ L +VL DE ++ LD +TT I++ LK R L G T++ +
Sbjct: 147 QRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRL-GLTILLITHEMDVVK 205
Query: 373 ELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADF 415
+ D V ++S G+++ Q V FS PK F
Sbjct: 206 RICDCVAVISNGELIEQDTVSEV--------FSHPKTPLAQKF 240
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 96.1 bits (239), Expect = 4e-23
Identities = 38/189 (20%), Positives = 79/189 (41%), Gaps = 16/189 (8%)
Query: 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFAR 902
+L +T G + G +G GKTTL+ ++ ++G+I +G P +
Sbjct: 15 PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK--PLKGEIIYNGVPITK--VKG 70
Query: 903 ISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIG 962
+ + I ++V + L A L ++ + + + +E VE+ L
Sbjct: 71 KIFFLPEEIIVPRKISVEDYLKAVASLY-----GVKVNKNEIMDALESVEVLDLKKK--- 122
Query: 963 LPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIV-NTGRTI 1021
+ LS +R+ +A L+ N I +D+P +D + V++++ I+ G I
Sbjct: 123 ---LGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVI 179
Query: 1022 VCTIHQPSI 1030
+ + + S
Sbjct: 180 ISSREELSY 188
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 70.0 bits (171), Expect = 4e-14
Identities = 34/215 (15%), Positives = 73/215 (33%), Gaps = 48/215 (22%)
Query: 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPP 208
+L+ ++ I + GP GKTTLL ++ L G+I YNG +
Sbjct: 15 PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPL---KGEIIYNGVPITKV--K 69
Query: 209 RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFM 268
++ ++ +++V + L GV + I + ++ +K
Sbjct: 70 GKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDLK--------- 120
Query: 269 KSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVL 328
+ L +S G +R+ L+ A +
Sbjct: 121 ---------------------------------KKLGELSQGTIRRVQLASTLLVNAEIY 147
Query: 329 FMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVIS 363
+D+ +D + ++++K + + G +IS
Sbjct: 148 VLDDPVVAIDEDSKHKVLKSILEILKEK-GIVIIS 181
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 97.2 bits (242), Expect = 6e-23
Identities = 50/217 (23%), Positives = 95/217 (43%), Gaps = 11/217 (5%)
Query: 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE 898
++ +L ++ + G A VG+SG GK+TL++++ + G I I G+ +
Sbjct: 28 DNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYD--VTSGQILIDGHNIKDF 85
Query: 899 TFARISGYCE--QNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSL 956
+ Q D TV E++L E+ + A + + L
Sbjct: 86 LTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIM--NLPQG 143
Query: 957 SGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVN 1016
+G G+ LS Q++RL+IA + NP I+ +DE TS LD + +I+ + + +
Sbjct: 144 YDTEVGERGVK-LSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVL-S 201
Query: 1017 TGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGP 1053
RT + H+ S D+++ ++ G ++ G
Sbjct: 202 KDRTTLIVAHRLS--TITHADKIVVIE-NGHIVETGT 235
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 83.7 bits (207), Expect = 2e-18
Identities = 56/267 (20%), Positives = 98/267 (36%), Gaps = 48/267 (17%)
Query: 141 YRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGH 200
Y N + IL D++ I +G GK+TL+ + SG+I +GH
Sbjct: 26 YNDNEAP--ILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVT---SGQILIDGH 80
Query: 201 GFKEFVPP--RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGI 258
K+F+ R + QQD + TV+E + G E+ K+A
Sbjct: 81 NIKDFLTGSLRNQIGLVQQDNILFSDTVKENILL-------GRPTATDEEVVEAAKMANA 133
Query: 259 KPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTG 318
I+ L DT VG E +SGGQK+RL+
Sbjct: 134 HDF--------------------------IMNLPQGYDTEVG-ERGVKLSGGQKQRLSIA 166
Query: 319 ELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDV 378
+ + +L +DE ++ LD + I + L ++ T + ++ D +
Sbjct: 167 RIFLNNPPILILDEATSALDLESESIIQEALDVLSK---DRTTL-IVAHRLSTITHADKI 222
Query: 379 ILLSEGQIVYQGPRVSVLD---FFASM 402
+++ G IV G ++ + +
Sbjct: 223 VVIENGHIVETGTHRELIAKQGAYEHL 249
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 95.0 bits (236), Expect = 2e-22
Identities = 46/219 (21%), Positives = 83/219 (37%), Gaps = 28/219 (12%)
Query: 845 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYP---KRQETFA 901
L ++G R G + LVG +GAGK+TL+ +AG +G +G I +G P A
Sbjct: 15 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG---KGSIQFAGQPLEAWSATKLA 71
Query: 902 RISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALI 961
Y Q V L + +E+ +V + L G
Sbjct: 72 LHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELL--------NDVAGALALDDKLGRST 123
Query: 962 GLPGINGLSTEQRKRLTIAVELVA-------NPSIVFMDEPTSGLDARAAAIVMRTVRNI 1014
LS + +R+ +A ++ ++ +DEP + LD + + + + +
Sbjct: 124 N-----QLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSAL 178
Query: 1015 VNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGP 1053
G IV + H + +K GG+++ +G
Sbjct: 179 CQQGLAIVMSSHDLN-HTLRHAHRAWLLK-GGKMLASGR 215
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 73.0 bits (179), Expect = 6e-15
Identities = 50/264 (18%), Positives = 87/264 (32%), Gaps = 60/264 (22%)
Query: 144 NRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFK 203
+ ++ T L LSG +R + L+GP +GK+TLL +AG G I + G +
Sbjct: 8 DVAESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGM----TSGKGSIQFAGQPLE 63
Query: 204 EFVPPRTS---AYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKP 260
+ + + AY+SQQ V L R ++
Sbjct: 64 AWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQ-------------HDKTRTEL----- 105
Query: 261 DEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGEL 320
+ + L LD +SGG+ +R+ +
Sbjct: 106 ---------------------LNDVAGALALDDKLGRSTNQ-----LSGGEWQRVRLAAV 139
Query: 321 LVGPA-------RVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYE 373
++ ++L +DE N LD + + K L + G ++
Sbjct: 140 VLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQ--QGLAIVMSSHDLNHTLR 197
Query: 374 LFDDVILLSEGQIVYQGPRVSVLD 397
LL G+++ G R VL
Sbjct: 198 HAHRAWLLKGGKMLASGRREEVLT 221
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 93.8 bits (233), Expect = 7e-22
Identities = 51/210 (24%), Positives = 91/210 (43%), Gaps = 12/210 (5%)
Query: 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYP---K 895
D +L N+ + + G + +VG SG+GK+TL ++ G + I G+
Sbjct: 13 PDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI--PENGQVLIDGHDLALA 70
Query: 896 RQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTS 955
R G Q D ++++++ + ++ + A + +
Sbjct: 71 DPNWLRRQVGVVLQ-DNVLLNRSIIDNISLANPGMSVEKVIYAAKLA---GAHDFISELR 126
Query: 956 LSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIV 1015
I GLS QR+R+ IA LV NP I+ DE TS LD + ++MR + I
Sbjct: 127 EGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKI- 185
Query: 1016 NTGRTIVCTIHQPSIDIFESFDELLFMKRG 1045
GRT++ H+ S ++ D ++ M++G
Sbjct: 186 CKGRTVIIIAHRLS--TVKNADRIIVMEKG 213
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 72.3 bits (177), Expect = 1e-14
Identities = 51/259 (19%), Positives = 96/259 (37%), Gaps = 45/259 (17%)
Query: 141 YRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGH 200
Y+ + ILD+++ I+ + ++G SGK+TL + +G++ +GH
Sbjct: 11 YKPDSP--VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPE---NGQVLIDGH 65
Query: 201 GFKEFVPPRTSAYVS--QQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGI 258
P V QD + ++ + + A V K +LA
Sbjct: 66 DLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSV-EKVIYAAKLAGAHDFISE 124
Query: 259 KPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTG 318
+ I + A G+SGGQ++R+
Sbjct: 125 LREGYNTIVGEQGA---------------------------------GLSGGQRQRIAIA 151
Query: 319 ELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDV 378
LV ++L DE ++ LD + + I++ + + G TVI + + D +
Sbjct: 152 RALVNNPKILIFDEATSALDYESEHVIMRNMH---KICKGRTVIIIAH-RLSTVKNADRI 207
Query: 379 ILLSEGQIVYQGPRVSVLD 397
I++ +G+IV QG +L
Sbjct: 208 IVMEKGKIVEQGKHKELLS 226
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 91.9 bits (228), Expect = 4e-21
Identities = 49/213 (23%), Positives = 87/213 (40%), Gaps = 12/213 (5%)
Query: 845 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFA 901
L +T RPG +TALVG +G+GK+T+ +L G + + G P Q
Sbjct: 30 LQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQ--PTGGQLLLDGKPLPQYEHRYLH 87
Query: 902 RISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALI 961
R Q ++ E++ + + P+ E+ + L +
Sbjct: 88 RQVAAVGQEPQVFGR-SLQENIAYGLTQK-PTMEEITAAAVKSGAHSFISGLPQGYDTEV 145
Query: 962 GLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVN-TGRT 1020
G LS QR+ + +A L+ P ++ +D+ TS LDA + V + + R+
Sbjct: 146 DEAGSQ-LSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRS 204
Query: 1021 IVCTIHQPSIDIFESFDELLFMKRGGELIYAGP 1053
++ S + E D +LF++ GG + G
Sbjct: 205 VLLITQHLS--LVEQADHILFLE-GGAIREGGT 234
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 84.2 bits (208), Expect = 2e-18
Identities = 53/266 (19%), Positives = 100/266 (37%), Gaps = 45/266 (16%)
Query: 143 GNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGF 202
NR + +L L+ +RP +T L+GP SGK+T+ L G++ +G
Sbjct: 22 PNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPT---GGQLLLDGKPL 78
Query: 203 KEFVPP---RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIK 259
++ R A V Q + QV +++E + + +T+ E+I
Sbjct: 79 PQYEHRYLHRQVAAVGQ-EPQVFGRSLQENIAYG------------LTQKPTMEEITAAA 125
Query: 260 PDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGE 319
F+ G DT V E +SGGQ++ +
Sbjct: 126 VKSGAHSFISGLPQGY--------------------DTEVD-EAGSQLSGGQRQAVALAR 164
Query: 320 LLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVI 379
L+ VL +D+ ++ LD+++ Q+ + L S + ++ E D ++
Sbjct: 165 ALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQH--LSLVEQADHIL 222
Query: 380 LLSEGQIVYQGPRVSVLD---FFASM 402
L G I G +++ + +M
Sbjct: 223 FLEGGAIREGGTHQQLMEKKGCYWAM 248
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 91.2 bits (226), Expect = 5e-21
Identities = 56/214 (26%), Positives = 90/214 (42%), Gaps = 14/214 (6%)
Query: 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFA 901
+ + ++ G VG SG GK+TL+ ++AG +T I GD++I A
Sbjct: 13 VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLET--ITSGDLFIGEKRMNDTPPA 70
Query: 902 RIS-GYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGAL 960
G Q+ P L+V E++ F L + E V +V E+++L L
Sbjct: 71 ERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKK---EVINQRVNQVAEVLQLAHLLDRK 127
Query: 961 IGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIV-NTGR 1019
LS QR+R+ I LVA PS+ +DEP S LDA + + + GR
Sbjct: 128 PK-----ALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGR 182
Query: 1020 TIVCTIHQPSIDIFESFDELLFMKRGGELIYAGP 1053
T++ H D+++ + G + G
Sbjct: 183 TMIYVTHDQVE-AMTLADKIVVL-DAGRVAQVGK 214
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 79.2 bits (195), Expect = 5e-17
Identities = 51/271 (18%), Positives = 94/271 (34%), Gaps = 52/271 (19%)
Query: 147 KLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV 206
++ + D++ I + +GP GK+TLL +AG SG + +
Sbjct: 12 EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETIT---SGDLFIGEKRMNDTP 68
Query: 207 PPRTS-AYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLD 265
P V Q ++V E + F + G + ++
Sbjct: 69 PAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKE-------VINQR----------- 110
Query: 266 IFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPA 325
V + ++L L D +SGGQ++R+ G LV
Sbjct: 111 ----------------VNQVAEVLQLAHLLDRKPKA-----LSGGQRQRVAIGRTLVAEP 149
Query: 326 RVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQ 385
V +DE + LD++ ++ G T+I + EA L D +++L G+
Sbjct: 150 SVFLLDEPLSNLDAA-LRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGR 208
Query: 386 IVYQGPRVSVLDFFASMGFSCPKRKNVADFL 416
+ G + + + P + VA F+
Sbjct: 209 VAQVGKPLEL--------YHYPADRFVAGFI 231
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 88.0 bits (218), Expect = 6e-20
Identities = 51/218 (23%), Positives = 95/218 (43%), Gaps = 12/218 (5%)
Query: 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ- 897
+D Q+L +++ +P + A G SG GK+T+ +L G+I I G P
Sbjct: 12 DDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQ--PTAGEITIDGQPIDNI 69
Query: 898 --ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTS 955
E + G+ Q+ G ++ AF +E +
Sbjct: 70 SLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPD-- 127
Query: 956 LSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIV 1015
+G G+ +S QR+RL IA + NP I+ +DE T+ LD+ + ++V + + ++
Sbjct: 128 QLNTEVGERGVK-ISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSL- 185
Query: 1016 NTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGP 1053
GRT + H+ S D++ F+++ G++ +G
Sbjct: 186 MKGRTTLVIAHRLS--TIVDADKIYFIEK-GQITGSGK 220
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 76.8 bits (189), Expect = 4e-16
Identities = 53/253 (20%), Positives = 87/253 (34%), Gaps = 45/253 (17%)
Query: 141 YRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGH 200
Y + IL D+S +P+ + GP GK+T+ L +G+IT +G
Sbjct: 11 YDDSE---QILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPT---AGEITIDGQ 64
Query: 201 GFKEFVPP--RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGI 258
R+ QD + T+RE L + + + +LA
Sbjct: 65 PIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVEN 124
Query: 259 KPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTG 318
PD+ +T VG E ISGGQ++RL
Sbjct: 125 MPDQL--------------------------------NTEVG-ERGVKISGGQRQRLAIA 151
Query: 319 ELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDV 378
+ ++L +DE + LDS + + K L + G T + + D +
Sbjct: 152 RAFLRNPKILMLDEATASLDSESESMVQKALD---SLMKGRTTLVIAH-RLSTIVDADKI 207
Query: 379 ILLSEGQIVYQGP 391
+ +GQI G
Sbjct: 208 YFIEKGQITGSGK 220
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 84.8 bits (209), Expect = 8e-19
Identities = 63/218 (28%), Positives = 98/218 (44%), Gaps = 15/218 (6%)
Query: 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG---RKTGGIIEGDIYISGYPKRQ 897
++ L NV G ++G SGAGKTT M ++AG TG + D ++ K
Sbjct: 17 KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLI 76
Query: 898 -ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSL 956
R G Q P LT E++ F S+ E R VEEV +++++ +
Sbjct: 77 VPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSK---EEIRKRVEEVAKILDIHHV 133
Query: 957 SGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIV- 1015
LS Q++R+ +A LV +PS++ +DEP S LDAR V+ +
Sbjct: 134 LN-----HFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQS 188
Query: 1016 NTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGP 1053
G T++ H P+ DIF D + + G+L+ G
Sbjct: 189 RLGVTLLVVSHDPA-DIFAIADRVGVL-VKGKLVQVGK 224
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 72.4 bits (177), Expect = 1e-14
Identities = 54/294 (18%), Positives = 110/294 (37%), Gaps = 60/294 (20%)
Query: 130 MTEALLRQL-RIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHH 188
M +++ + ++++ K+ LD+++ I +LGP +GKTT + +AG
Sbjct: 1 MVRIIVKNVSKVFKKG--KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPS 58
Query: 189 LQVSGKITYNGHGF----KEFVPP--RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSK 242
+G++ ++ K VPP R V Q +T E + F
Sbjct: 59 ---TGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAF-------PLT 108
Query: 243 YDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDE 302
+++ R++ VE + KIL + +
Sbjct: 109 NMKMSKEEIRKR---------------------------VEEVAKILDIHHVLNH----- 136
Query: 303 MLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVI 362
+ +SG Q++R+ LV +L +DE + LD+ + L ++ G T++
Sbjct: 137 FPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDA-RMRDSARALVKEVQSRLGVTLL 195
Query: 363 SLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFL 416
+ + + + D V +L +G++V G + + P VA +
Sbjct: 196 VVSHDPADIFAIADRVGVLVKGKLVQVGKPEDL--------YDNPVSIQVASLI 241
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 84.2 bits (208), Expect = 1e-18
Identities = 56/213 (26%), Positives = 87/213 (40%), Gaps = 16/213 (7%)
Query: 847 NVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGG-IIEGDIYISGYPKRQETFARI 903
++ + G L+G SG GKTT + ++AG + G I GD ++ K +
Sbjct: 21 EMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKD 80
Query: 904 SG--YCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALI 961
Q+ P +TV +++ F LR E+ V EV EL+ LT L
Sbjct: 81 RDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEI---DQRVREVAELLGLTELLNRKP 137
Query: 962 GLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIV-NTGRT 1020
LS QR+R+ + +V P + MDEP S LDA+ + ++ + G T
Sbjct: 138 R-----ELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVT 192
Query: 1021 IVCTIHQPSIDIFESFDELLFMKRGGELIYAGP 1053
+ H + D + M R G L G
Sbjct: 193 TIYVTHDQV-EAMTMGDRIAVMNR-GVLQQVGS 223
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 76.9 bits (189), Expect = 4e-16
Identities = 53/287 (18%), Positives = 97/287 (33%), Gaps = 47/287 (16%)
Query: 130 MTEALLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHL 189
M L + G +T + ++S ++ +LLGP GKTT L +AG
Sbjct: 1 MAGVRLVDVWKVFGE---VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPS- 56
Query: 190 QVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITEL 249
G+I V+ + + + Q + + +
Sbjct: 57 --RGQIYIGDK------------LVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNI 102
Query: 250 ARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISG 309
A K+ + E V + ++LGL + + +SG
Sbjct: 103 AFPLKLRKVPRQEIDQR---------------VREVAELLGLTELLNRKPRE-----LSG 142
Query: 310 GQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAP 369
GQ++R+ G +V +V MDE + LD + ++ + G T I +
Sbjct: 143 GQRQRVALGRAIVRKPQVFLMDEPLSNLD-AKLRVRMRAELKKLQRQLGVTTIYVTHDQV 201
Query: 370 EAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFL 416
EA + D + +++ G + G V + P VA F+
Sbjct: 202 EAMTMGDRIAVMNRGVLQQVGSPDEV--------YDKPANTFVAGFI 240
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 75.1 bits (184), Expect = 1e-15
Identities = 45/214 (21%), Positives = 86/214 (40%), Gaps = 23/214 (10%)
Query: 845 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG----RKTGGIIEGDIYISGYPKRQETF 900
L N++ G ++G +GAGKT ++++AG +++G P++
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEK---- 71
Query: 901 ARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGAL 960
+ QN P + V ++L F ++ + + V++ + L
Sbjct: 72 -HDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPK---------RVLDTARDLKIEHLL 121
Query: 961 IGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIV-NTGR 1019
P LS +++R+ +A LV NP I+ +DEP S LD R + +
Sbjct: 122 DRNP--LTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKL 179
Query: 1020 TIVCTIHQPSIDIFESFDELLFMKRGGELIYAGP 1053
T++ H + + D + + G+LI G
Sbjct: 180 TVLHITHDQT-EARIMADRIAVV-MDGKLIQVGK 211
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 71.2 bits (174), Expect = 3e-14
Identities = 52/267 (19%), Positives = 99/267 (37%), Gaps = 55/267 (20%)
Query: 151 LDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPR- 209
LD+LS + ++LGP +GKT L +AG SG+I +G + P +
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPD---SGRILLDGKDVTDLSPEKH 72
Query: 210 TSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMK 269
A+V Q M V++ L+F + + + ++
Sbjct: 73 DIAFVYQNYSLFPHMNVKKNLEFGMRMKKIK----------DPKR--------------- 107
Query: 270 SFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLF 329
V + L ++ D +SGG+++R+ LV ++L
Sbjct: 108 ------------VLDTARDLKIEHLLD-----RNPLTLSGGEQQRVALARALVTNPKILL 150
Query: 330 MDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQ 389
+DE + LD T + + + + TV+ + EA + D + ++ +G+++
Sbjct: 151 LDEPLSALDP-RTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQV 209
Query: 390 GPRVSVLDFFASMGFSCPKRKNVADFL 416
G + F P VA F+
Sbjct: 210 GKPEEI--------FEKPVEGRVASFV 228
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 72.0 bits (176), Expect = 2e-14
Identities = 44/204 (21%), Positives = 83/204 (40%), Gaps = 20/204 (9%)
Query: 854 PGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIE-GDIYISGYPKRQETFARISGYCEQN 910
L+G +GAGK+ ++++AG + G + I+ P + R G+ Q+
Sbjct: 23 GRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPER----RGIGFVPQD 78
Query: 911 DIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLS 970
P L+V ++ + E + V E+ E + + L LS
Sbjct: 79 YALFPHLSVYRNIAYGLRNVERVERDRR-----VREMAEKLGIAHLLDRKPA-----RLS 128
Query: 971 TEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIV-NTGRTIVCTIHQPS 1029
+R+R+ +A LV P ++ +DEP S +D + ++M +R + I+ H
Sbjct: 129 GGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLI 188
Query: 1030 IDIFESFDELLFMKRGGELIYAGP 1053
+ DE+ M G ++ G
Sbjct: 189 -EAAMLADEVAVM-LNGRIVEKGK 210
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 59.6 bits (144), Expect = 3e-10
Identities = 48/252 (19%), Positives = 88/252 (34%), Gaps = 55/252 (21%)
Query: 166 LLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTS-AYVSQQDWQVAEM 224
LLGP +GK+ L +AG + G++ NG P R +V Q +
Sbjct: 29 LLGPTGAGKSVFLELIAGIVKPD---RGEVRLNGADITPLPPERRGIGFVPQDYALFPHL 85
Query: 225 TVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEY 284
+V + + + + + E+A + IA +
Sbjct: 86 SVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLL------------------------- 120
Query: 285 IMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQ 344
D +SGG+++R+ LV R+L +DE + +D T
Sbjct: 121 ----------------DRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGV 164
Query: 345 IIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGF 404
+++ + ++ + EA L D+V ++ G+IV +G +
Sbjct: 165 LME-ELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFS------- 216
Query: 405 SCPKRKNVADFL 416
K VA+FL
Sbjct: 217 --AKNGEVAEFL 226
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 48.1 bits (113), Expect = 9e-07
Identities = 17/187 (9%), Positives = 38/187 (20%), Gaps = 35/187 (18%)
Query: 859 ALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLT 918
+ G G GKTTL+ + R + R ++
Sbjct: 4 IITGEPGVGKTTLVKKIVERLG--KRAIGFWTEEV--------RDPETKKRTGFRIITTE 53
Query: 919 VLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLT 978
+ + S + + E
Sbjct: 54 GKKKIFSSKFFTSKKLVGSYGVNVQYFE----------------------ELAIPILERA 91
Query: 979 IAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDE 1038
++ +DE + + + + +V TI + E
Sbjct: 92 YREAKKDRRKVIIIDEIGKMEL-FSKKFRDLVRQIMHDPNVNVVATIPIRDVHPL--VKE 148
Query: 1039 LLFMKRG 1045
+ +
Sbjct: 149 IRRLPGA 155
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 37.3 bits (85), Expect = 0.004
Identities = 11/66 (16%), Positives = 18/66 (27%), Gaps = 5/66 (7%)
Query: 165 LLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP--PRTSAYVSQQDWQVA 222
++ G P GKTTL+ + RLG + E + +
Sbjct: 4 IITGEPGVGKTTLVKKIVERLGKR---AIGFWTEEVRDPETKKRTGFRIITTEGKKKIFS 60
Query: 223 EMTVRE 228
Sbjct: 61 SKFFTS 66
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.2 bits (100), Expect = 8e-05
Identities = 19/124 (15%), Positives = 36/124 (29%), Gaps = 3/124 (2%)
Query: 151 LDD-LSGIIRPSRLTLLLGPPSSGKTTLLL--ALAGRLGHHLQVSGKITYNGHGFKEFVP 207
LD L G I +T + G +GKT + A+ +L F P
Sbjct: 12 LDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRP 71
Query: 208 PRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIF 267
R A + +++ A + + + A + D ++
Sbjct: 72 ERLLAVAERYGLSGSDVLDNVAYARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALY 131
Query: 268 MKSF 271
+
Sbjct: 132 RTDY 135
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} Length = 277 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Score = 43.1 bits (100), Expect = 9e-05
Identities = 10/83 (12%), Positives = 28/83 (33%), Gaps = 1/83 (1%)
Query: 151 LDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRT 210
++D + R + ++ GK+T + A + G + + E
Sbjct: 25 INDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGL-AMLEESVEETAEDL 83
Query: 211 SAYVSQQDWQVAEMTVRETLDFA 233
++ + ++ RE ++
Sbjct: 84 IGLHNRVRLRQSDSLKREIIENG 106
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 42.0 bits (97), Expect = 2e-04
Identities = 14/45 (31%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Query: 151 LDD-LSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGK 194
LD L G + +T L G +GK+ L LA L + G
Sbjct: 23 LDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGG 67
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} Length = 274 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Score = 40.4 bits (93), Expect = 8e-04
Identities = 10/35 (28%), Positives = 18/35 (51%)
Query: 151 LDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRL 185
LD + + + L+ P +GK+ L L LA ++
Sbjct: 19 LDYVLPNMVAGTVGALVSPGGAGKSMLALQLAAQI 53
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Score = 39.7 bits (91), Expect = 0.001
Identities = 10/33 (30%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 151 LDD-LSGIIRPSRLTLLLGPPSSGKTTLLLALA 182
LD L G + +T G SGKT ++
Sbjct: 23 LDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSC 55
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 427 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 39.7 bits (91), Expect = 0.002
Identities = 20/130 (15%), Positives = 37/130 (28%), Gaps = 11/130 (8%)
Query: 920 LESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTI 979
+E +A L + E E L + G + L+ L
Sbjct: 294 VELAGGNASLTIEDEDEPFNAGIKYHATPPLKRFKDMEYLSGGEKTVAALA------LLF 347
Query: 980 AVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDEL 1039
A+ +DE + LD + +R N + + +FE D L
Sbjct: 348 AINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKN--TMFEKSDAL 405
Query: 1040 L---FMKRGG 1046
+ ++
Sbjct: 406 VGVYRQQQEN 415
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} Length = 176 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Score = 38.1 bits (87), Expect = 0.002
Identities = 14/97 (14%), Positives = 31/97 (31%), Gaps = 3/97 (3%)
Query: 161 SRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITY---NGHGFKEFVPPRTSAYVSQQ 217
+L ++ GP GK+T LA +L + + G I G + A +
Sbjct: 2 KKLYIITGPAGVGKSTTCKRLAAQLDNSAYIEGDIINHMVVGGYRPPWESDELLALTWKN 61
Query: 218 DWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREK 254
+ + D + + + + + +
Sbjct: 62 ITDLTVNFLLAQNDVVLDYIAFPDEAEALAQTVQAKV 98
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Score = 38.8 bits (89), Expect = 0.002
Identities = 9/39 (23%), Positives = 14/39 (35%), Gaps = 1/39 (2%)
Query: 151 LDD-LSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHH 188
LD+ G + L G +GKT L+ +
Sbjct: 15 LDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENACAN 53
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Score = 38.8 bits (89), Expect = 0.002
Identities = 10/33 (30%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 151 LDD-LSGIIRPSRLTLLLGPPSSGKTTLLLALA 182
DD G + R TL+ G +GKT +
Sbjct: 15 FDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFL 47
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1085 | |||
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.75 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.62 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.36 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.36 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.26 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 98.92 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 98.78 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 98.56 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 98.44 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 98.41 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 98.12 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 97.99 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 97.45 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 97.41 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 97.3 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 97.28 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 97.08 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 96.89 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.71 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 96.71 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 96.67 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 96.64 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 96.6 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 96.58 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.47 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 96.36 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 96.34 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 96.3 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 96.29 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 96.29 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 96.24 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 96.23 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 96.19 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 96.17 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 96.15 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 96.14 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 96.05 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 96.03 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 95.97 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 95.95 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 95.81 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 95.78 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 95.71 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 95.71 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 95.64 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 95.62 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 95.6 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 95.59 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 95.58 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 95.55 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 95.53 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 95.53 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 95.44 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 95.39 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 95.33 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 95.31 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 95.28 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 95.27 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 95.2 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 95.2 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 95.12 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 95.1 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 95.08 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 95.06 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 95.05 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 95.02 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 95.02 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 95.01 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 95.0 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 94.99 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 94.99 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 94.97 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 94.97 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 94.97 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 94.95 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 94.92 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 94.9 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 94.87 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 94.87 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 94.83 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 94.79 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 94.78 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 94.74 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 94.73 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 94.71 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 94.71 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 94.69 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 94.68 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 94.65 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 94.63 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 94.62 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 94.59 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 94.55 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 94.55 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 94.53 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 94.52 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 94.49 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 94.48 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 94.47 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 94.47 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 94.44 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 94.42 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 94.38 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 94.35 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 94.34 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 94.31 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 94.27 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 94.25 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 94.2 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 94.19 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 94.15 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 94.11 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 94.05 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 94.04 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 94.03 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 94.03 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 93.99 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 93.98 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 93.96 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 93.95 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 93.94 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 93.93 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 93.93 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 93.88 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 93.87 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 93.87 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 93.85 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 93.82 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 93.8 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 93.76 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 93.75 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 93.73 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 93.71 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 93.69 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 93.68 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 93.65 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 93.61 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 93.61 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 93.59 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 93.58 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 93.57 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 93.52 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 93.51 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 93.45 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 93.41 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 93.41 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 93.39 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 93.32 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 93.29 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 93.22 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 93.22 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 93.2 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 93.17 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 93.13 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 93.03 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 93.02 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 93.0 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 92.96 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 92.9 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 92.89 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 92.87 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 92.7 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 92.66 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 92.64 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 92.62 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 92.6 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 92.55 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 92.55 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 92.54 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 92.44 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 92.42 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 92.38 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 92.33 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 92.32 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 92.26 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 92.24 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 92.23 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 92.22 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 92.19 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 92.18 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 92.17 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 92.13 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 92.09 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 92.08 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 91.94 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 91.94 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 91.93 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 91.92 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 91.89 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 91.88 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 91.87 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 91.85 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 91.8 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 91.79 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 91.75 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 91.57 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 91.55 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 91.53 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 91.5 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 91.47 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 91.45 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 91.44 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 91.43 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 91.34 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 91.34 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 91.34 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 91.33 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 91.32 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 91.31 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 91.29 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 91.28 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 91.25 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 91.24 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 91.22 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 91.21 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 91.19 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 91.14 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 91.14 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 91.13 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 91.05 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 91.04 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 91.04 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 91.01 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 90.99 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 90.98 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 90.97 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 90.84 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 90.83 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 90.81 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 90.78 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 90.68 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 90.67 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 90.64 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 90.6 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 90.59 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 90.57 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 90.56 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 90.54 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 90.51 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 90.46 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 90.45 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 90.4 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 90.4 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 90.4 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 90.39 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 90.35 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 90.24 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 90.22 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 90.16 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 90.14 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 90.12 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 90.09 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 90.08 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 90.03 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 90.0 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 90.0 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 89.94 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 89.93 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 89.85 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 89.85 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 89.84 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 89.83 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 89.81 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 89.8 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 89.79 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 89.63 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 89.62 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 89.62 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 89.59 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 89.55 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 89.47 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 89.44 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 89.44 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 89.41 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 89.4 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 89.31 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 89.28 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 89.23 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 89.19 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 89.17 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 89.16 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 89.1 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 89.09 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 89.06 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 89.0 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 88.97 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 88.97 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 88.96 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 88.95 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 88.95 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 88.88 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 88.84 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 88.83 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 88.81 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 88.73 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 88.7 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 88.65 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 88.61 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 88.57 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 88.38 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 88.28 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 88.23 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 88.16 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 88.16 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 88.12 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 88.06 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 88.03 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 87.99 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 87.96 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 87.95 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 87.91 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 87.9 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 87.88 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 87.88 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 87.87 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 87.86 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 87.85 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 87.77 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 87.76 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 87.72 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 87.71 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 87.69 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 87.5 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 87.49 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 87.41 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 87.34 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 87.32 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 87.28 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 87.26 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 87.24 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 87.16 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 87.05 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 87.0 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 86.9 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 86.9 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 86.89 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 86.89 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 86.88 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 86.62 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 86.55 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 86.49 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 86.4 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 86.39 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 86.37 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 86.33 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 86.15 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 86.08 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 86.08 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 86.07 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 85.96 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 85.9 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 85.89 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 85.86 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 85.79 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 85.7 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 85.62 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 85.55 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 85.31 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 85.2 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 85.15 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 85.14 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 85.04 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 85.02 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 84.99 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 84.91 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 84.71 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 84.7 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 84.55 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 84.35 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 84.24 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 84.2 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 84.16 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 84.08 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 84.07 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 83.89 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 83.86 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 83.83 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 83.56 | |
| d1jbka_ | 195 | ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | 83.28 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 82.84 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 82.7 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 82.67 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 82.58 | |
| d1uaaa1 | 306 | DEXX box DNA helicase {Escherichia coli, RepD [Tax | 82.51 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 82.32 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 81.97 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 81.86 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 81.82 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 81.71 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 81.48 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 81.34 | |
| d1pjra1 | 318 | DEXX box DNA helicase {Bacillus stearothermophilus | 81.28 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 80.79 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 80.57 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 80.52 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 80.31 | |
| d1zunb3 | 222 | Sulfate adenylate transferase subunit cysN/C, EF-T | 80.13 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 80.03 |
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=2.9e-47 Score=402.12 Aligned_cols=212 Identities=24% Similarity=0.333 Sum_probs=180.9
Q ss_pred ccccccccCCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCCh-hcccceEEEEccC
Q 001400 832 LKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ-ETFARISGYCEQN 910 (1085)
Q Consensus 832 ~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~-~~~~~~~gy~~Q~ 910 (1085)
++++++.|++..+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.++|+++.. ...+|.+|||+|+
T Consensus 9 v~nlsk~yg~~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~--p~sG~I~i~g~~i~~~~~~~r~ig~v~Q~ 86 (239)
T d1v43a3 9 LENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEE--PTEGRIYFGDRDVTYLPPKDRNISMVFQS 86 (239)
T ss_dssp EEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECTTSCGGGGTEEEEEC-
T ss_pred EEEEEEEECCEEEEcceeEEECCCCEEEEECCCCChHHHHHHHHHcCCC--CCCCEEEEcceecccCCcccceEEEEeec
Confidence 3444555678899999999999999999999999999999999999877 569999999998754 2345679999999
Q ss_pred CCCCCCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEE
Q 001400 911 DIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIV 990 (1085)
Q Consensus 911 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~il 990 (1085)
+.+++.+||+||+.|.+.++ ..+..+.++.++++++.++|.+..+... .+|||||||||+|||||+.+|+||
T Consensus 87 ~~l~~~ltv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSGGq~QRvaiAraL~~~P~iL 158 (239)
T d1v43a3 87 YAVWPHMTVYENIAFPLKIK---KFPKDEIDKRVRWAAELLQIEELLNRYP-----AQLSGGQRQRVAVARAIVVEPDVL 158 (239)
T ss_dssp -----CCCHHHHHHTTCC-----CCCHHHHHHHHHHHHHHTTCGGGTTSCT-----TTCCSSCHHHHHHHHHHTTCCSEE
T ss_pred hhhcccchHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhcCCh-----hhCCHHHHHHHHHHhhhccCCCce
Confidence 99999999999999887554 3456677788999999999998888754 589999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHC-CceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCC
Q 001400 991 FMDEPTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1085)
Q Consensus 991 llDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~ 1055 (1085)
+|||||+|||+.++..+++.|+++.++ |.|||+||||++ ++.+.|||+++|++ |++++.|+..
T Consensus 159 llDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~~-~a~~~~dri~vm~~-G~iv~~G~~~ 222 (239)
T d1v43a3 159 LMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQV-EAMTMGDRIAVMNR-GQLLQIGSPT 222 (239)
T ss_dssp EEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECHH
T ss_pred eecCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcCHH
Confidence 999999999999999999999999754 999999999987 57888999999985 7999999853
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=3.5e-47 Score=400.24 Aligned_cols=208 Identities=24% Similarity=0.358 Sum_probs=150.1
Q ss_pred ceeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCC-CceEEEEccCCCCCCCCC
Q 001400 147 KLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP-PRTSAYVSQQDWQVAEMT 225 (1085)
Q Consensus 147 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lT 225 (1085)
++++|+|||+.|++||+++|+|||||||||||++|+|++.|+ +|+|.+||+++.+..+ +|.+|||+|++.+++.+|
T Consensus 12 ~~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~---sG~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~~t 88 (232)
T d2awna2 12 EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETIT---SGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLS 88 (232)
T ss_dssp TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEESSSCCTTSCGGGTCEEEECSSCCC-----
T ss_pred CEEEEeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCC---CCEEEECCEECCCCchhhceeeeeccccccccchh
Confidence 357999999999999999999999999999999999999887 9999999999876654 467999999999999999
Q ss_pred HHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCcccc
Q 001400 226 VRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLK 305 (1085)
Q Consensus 226 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 305 (1085)
|+||+.|+..+++... .+.+.+++++++.+||++.+|..+.
T Consensus 89 v~eni~~~~~~~~~~~----------------------------------~~~~~~v~~~l~~~~l~~~~~~~~~----- 129 (232)
T d2awna2 89 VAENMSFGLKLAGAKK----------------------------------EVINQRVNQVAEVLQLAHLLDRKPK----- 129 (232)
T ss_dssp --------------------------------------------------CHHHHHHHHHHHHC----------------
T ss_pred HHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHhCCChhhhhCChh-----
Confidence 9999999876543211 1123458999999999998887654
Q ss_pred cCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEecCCe
Q 001400 306 GISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQ 385 (1085)
Q Consensus 306 ~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~~G~ 385 (1085)
.|||||||||+|||||+.+|++|+|||||+|||+.++.+|++.|+++.+..+ ++++.++|+..++..+||||++|++|+
T Consensus 130 ~LSGGqkQRvaiAraL~~~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g-~tii~vTHd~~~a~~~~dri~vm~~G~ 208 (232)
T d2awna2 130 ALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLG-RTMIYVTHDQVEAMTLADKIVVLDAGR 208 (232)
T ss_dssp ----------CHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSC-CEEEEEESCHHHHHHHCSEEEEEETTE
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcC-CEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 6999999999999999999999999999999999999999999999987654 555668899999999999999999999
Q ss_pred EEEecChhhHHH
Q 001400 386 IVYQGPRVSVLD 397 (1085)
Q Consensus 386 iv~~G~~~~~~~ 397 (1085)
++++|+++++.+
T Consensus 209 iv~~G~~~el~~ 220 (232)
T d2awna2 209 VAQVGKPLELYH 220 (232)
T ss_dssp EEEEECHHHHHH
T ss_pred EEEEeCHHHHHh
Confidence 999999999864
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=9.9e-47 Score=398.85 Aligned_cols=211 Identities=27% Similarity=0.341 Sum_probs=186.3
Q ss_pred ccccccccCCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCChh-------cccceE
Q 001400 832 LKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE-------TFARIS 904 (1085)
Q Consensus 832 ~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~-------~~~~~~ 904 (1085)
++++.+.|++..+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.++|.++... ..++.+
T Consensus 6 v~nl~k~yg~~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~--p~sG~I~~~g~~i~~~~~~~~~~~~~r~i 83 (240)
T d1g2912 6 LVDVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEE--PSRGQIYIGDKLVADPEKGIFVPPKDRDI 83 (240)
T ss_dssp EEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC--CSEEEEEETTEEEEEGGGTEECCGGGSSE
T ss_pred EEeEEEEECCEEEEcceeeEEcCCCEEEEECCCCChHHHHHHHHhcCCC--CCCCEEEECCEEecccchhhhcccccccc
Confidence 3444555677899999999999999999999999999999999999877 5799999999875321 235679
Q ss_pred EEEccCCCCCCCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHh
Q 001400 905 GYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELV 984 (1085)
Q Consensus 905 gy~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~ 984 (1085)
|||+|++.++|.+||+||+.|+..++. .+..+.+++++++++.+++.+..+... .+||||||||++|||||+
T Consensus 84 g~v~Q~~~L~~~ltV~eni~~~~~~~~---~~~~e~~~~v~~~l~~~~l~~~~~~~p-----~~LSGGqkQRv~IAraL~ 155 (240)
T d1g2912 84 AMVFQSYALYPHMTVYDNIAFPLKLRK---VPRQEIDQRVREVAELLGLTELLNRKP-----RELSGGQRQRVALGRAIV 155 (240)
T ss_dssp EEECSCCCCCTTSCHHHHHHHHHHHTT---CCHHHHHHHHHHHHHHHTCGGGTTCCG-----GGSCHHHHHHHHHHHHHH
T ss_pred eecccchhhcchhhhhHhhhhhHHHcC---CCHHHHHHHHHHHHHHcCChhHhcCCh-----hhCCHHHHHHHHHHHHHh
Confidence 999999999999999999999877653 355677788999999999998887764 579999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCC
Q 001400 985 ANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1085)
Q Consensus 985 ~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~ 1054 (1085)
.+|+||||||||+|||+.++..|++.|+++.++ |.|||++|||++ ++...|||+++|++ |++++.|+.
T Consensus 156 ~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~-~~~~~~drv~vm~~-G~iv~~G~~ 224 (240)
T d1g2912 156 RKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQV-EAMTMGDRIAVMNR-GVLQQVGSP 224 (240)
T ss_dssp TCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECH
T ss_pred cCCCEEEecCCCcccCHHHHHHHHHHHHHHHhccCCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEEEcCH
Confidence 999999999999999999999999999999765 999999999987 57788999999985 799999985
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.3e-47 Score=401.75 Aligned_cols=212 Identities=27% Similarity=0.368 Sum_probs=151.3
Q ss_pred ccccccccCCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCChh-cccceEEEEccC
Q 001400 832 LKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE-TFARISGYCEQN 910 (1085)
Q Consensus 832 ~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~-~~~~~~gy~~Q~ 910 (1085)
++++++.|++..+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.++|+++... ..+|.+|||||+
T Consensus 3 v~nv~k~yg~~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~--p~sG~I~i~g~~i~~~~~~~r~ig~v~Q~ 80 (232)
T d2awna2 3 LQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLET--ITSGDLFIGEKRMNDTPPAERGVGMVFQS 80 (232)
T ss_dssp EEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEESSSCCTTSCGGGTCEEEECSS
T ss_pred EEEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCC--CCCCEEEECCEECCCCchhhceeeeeccc
Confidence 3444555678899999999999999999999999999999999999877 5699999999987543 345779999999
Q ss_pred CCCCCCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEE
Q 001400 911 DIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIV 990 (1085)
Q Consensus 911 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~il 990 (1085)
+.+++.+||+||+.|+...+. ...++.+++++++++.+++.+..+... .+|||||||||+|||||+.+|+||
T Consensus 81 ~~l~~~~tv~eni~~~~~~~~---~~~~~~~~~v~~~l~~~~l~~~~~~~~-----~~LSGGqkQRvaiAraL~~~P~il 152 (232)
T d2awna2 81 YALYPHLSVAENMSFGLKLAG---AKKEVINQRVNQVAEVLQLAHLLDRKP-----KALSGGQRQRVAIGRTLVAEPSVF 152 (232)
T ss_dssp CCC------------------------CHHHHHHHHHHHHC--------------------------CHHHHHHTCCSEE
T ss_pred cccccchhHHHHHHHHHHHcC---CCHHHHHHHHHHHHHhCCChhhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEE
Confidence 999999999999999876543 233455677899999999998887764 579999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHH-CCceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCC
Q 001400 991 FMDEPTSGLDARAAAIVMRTVRNIVN-TGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1085)
Q Consensus 991 llDEPtsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~ 1055 (1085)
||||||+|||+.++..+++.|+++.+ .|.|||++|||++ ++.+.|||+++|++ |++++.|+..
T Consensus 153 llDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~-~a~~~~dri~vm~~-G~iv~~G~~~ 216 (232)
T d2awna2 153 LLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLDA-GRVAQVGKPL 216 (232)
T ss_dssp EEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECHH
T ss_pred EEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEeCHH
Confidence 99999999999999999999999865 5999999999986 58888999999984 7999999853
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=7.8e-47 Score=398.82 Aligned_cols=207 Identities=25% Similarity=0.344 Sum_probs=176.5
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCC-CceEEEEccCCCCCCCCCH
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP-PRTSAYVSQQDWQVAEMTV 226 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 226 (1085)
..+|+|||+.|++||+++|+||||||||||+++|+|++.|+ +|+|.+||+++....+ +|.+|||+|++.+++.+||
T Consensus 19 ~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~---sG~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv 95 (239)
T d1v43a3 19 FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPT---EGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTV 95 (239)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCGGGGTEEEEEC------CCCH
T ss_pred EEEEcceeEEECCCCEEEEECCCCChHHHHHHHHHcCCCCC---CCEEEEcceecccCCcccceEEEEeechhhcccchH
Confidence 57999999999999999999999999999999999999887 9999999999876544 4679999999999999999
Q ss_pred HHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCccccc
Q 001400 227 RETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKG 306 (1085)
Q Consensus 227 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 306 (1085)
+||+.|+++.++... .+.+.+++++|+.+||++.+|..+ .+
T Consensus 96 ~enl~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-----~~ 136 (239)
T d1v43a3 96 YENIAFPLKIKKFPK----------------------------------DEIDKRVRWAAELLQIEELLNRYP-----AQ 136 (239)
T ss_dssp HHHHHTTCC--CCCH----------------------------------HHHHHHHHHHHHHTTCGGGTTSCT-----TT
T ss_pred HHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCChhhhcCCh-----hh
Confidence 999999876654211 012345889999999998877654 57
Q ss_pred CchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEecCCeE
Q 001400 307 ISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQI 386 (1085)
Q Consensus 307 LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~~G~i 386 (1085)
|||||||||+|||||+.+|++|+|||||+|||+.++.+|++.++++.+..+ ++++.++|+..++..+||||++|++|+|
T Consensus 137 LSGGq~QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~g-~tii~vTHd~~~a~~~~dri~vm~~G~i 215 (239)
T d1v43a3 137 LSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLK-VTTIYVTHDQVEAMTMGDRIAVMNRGQL 215 (239)
T ss_dssp CCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHT-CEEEEEESCHHHHHHHCSEEEEEETTEE
T ss_pred CCHHHHHHHHHHhhhccCCCceeecCCcccCCHHHHHHHHHHHHHHHHhcC-CeEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999999977654 5566688999999999999999999999
Q ss_pred EEecChhhHHH
Q 001400 387 VYQGPRVSVLD 397 (1085)
Q Consensus 387 v~~G~~~~~~~ 397 (1085)
+++|+++++.+
T Consensus 216 v~~G~~~el~~ 226 (239)
T d1v43a3 216 LQIGSPTEVYL 226 (239)
T ss_dssp EEEECHHHHHH
T ss_pred EEEcCHHHHHh
Confidence 99999999853
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=1.4e-46 Score=394.45 Aligned_cols=202 Identities=24% Similarity=0.346 Sum_probs=180.8
Q ss_pred eecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCC-CceEEEEccCCCCCCCCCHH
Q 001400 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP-PRTSAYVSQQDWQVAEMTVR 227 (1085)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~ 227 (1085)
.+|+||||.|++||+++|+|||||||||||++|+|++.|+ +|+|.++|+++.+..+ ++.+|||+|++.+++.+||+
T Consensus 14 ~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~---sG~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~~tV~ 90 (229)
T d3d31a2 14 FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPD---SGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVK 90 (229)
T ss_dssp CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCS---EEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHH
T ss_pred EEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCcCCC---CCEEEEccEeccccchhHhcceeeccccccCccccHH
Confidence 3899999999999999999999999999999999999887 9999999999977654 36799999999999999999
Q ss_pred HHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCcccccC
Q 001400 228 ETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGI 307 (1085)
Q Consensus 228 E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 307 (1085)
||+.|+.+.++.. ...+++++++.+||.+.+|..+ ..|
T Consensus 91 enl~~~~~~~~~~-------------------------------------~~~~~~~~l~~~~l~~~~~~~~-----~~L 128 (229)
T d3d31a2 91 KNLEFGMRMKKIK-------------------------------------DPKRVLDTARDLKIEHLLDRNP-----LTL 128 (229)
T ss_dssp HHHHHHHHHHCCC-------------------------------------CHHHHHHHHHHTTCTTTTTSCG-----GGS
T ss_pred HHHHHHHhhcccc-------------------------------------HHHHHHHHHHHhcchhhHhCCh-----hhC
Confidence 9999987654321 1234788899999998887665 469
Q ss_pred chhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEecCCeEE
Q 001400 308 SGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIV 387 (1085)
Q Consensus 308 SGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~~G~iv 387 (1085)
||||||||+|||||+.+|++|||||||+|||+.++.++.+.++++.+.. +++|+.++|+..++.++||||++|++|+++
T Consensus 129 SGG~~QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~~l~~l~~~~-g~tii~vtHd~~~~~~~~drv~vm~~G~iv 207 (229)
T d3d31a2 129 SGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKN-KLTVLHITHDQTEARIMADRIAVVMDGKLI 207 (229)
T ss_dssp CHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHCSEEEEESSSCEE
T ss_pred CHHHhcchhhhhhhhccCCceeecCCCcCCCHHHHHHHHHHHHHHHhcC-CcEEEEEcCCHHHHHHhCCEEEEEECCEEE
Confidence 9999999999999999999999999999999999999999999997754 456666899999999999999999999999
Q ss_pred EecChhhHH
Q 001400 388 YQGPRVSVL 396 (1085)
Q Consensus 388 ~~G~~~~~~ 396 (1085)
++|+++++.
T Consensus 208 ~~g~~~el~ 216 (229)
T d3d31a2 208 QVGKPEEIF 216 (229)
T ss_dssp EEECHHHHH
T ss_pred EEcCHHHHH
Confidence 999999985
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=8.8e-47 Score=398.57 Aligned_cols=208 Identities=23% Similarity=0.300 Sum_probs=182.5
Q ss_pred ceeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCC------CCceEEEEccCCCC
Q 001400 147 KLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV------PPRTSAYVSQQDWQ 220 (1085)
Q Consensus 147 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~------~~~~~~yv~Q~d~~ 220 (1085)
+..+|+|||++|++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++.... .+|.+|||+|++.+
T Consensus 17 ~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~---~G~I~~~g~~i~~~~~~~~~~~rr~ig~vfQ~~~L 93 (242)
T d1oxxk2 17 KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPS---TGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWAL 93 (242)
T ss_dssp TEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCS---EEEEEETTEEEEETTEESSCGGGSCEEEEETTSCC
T ss_pred CEEEEeceEEEECCCCEEEEECCCCCcHHHHHHHHHcCcCCC---CceEEECCEEeecCchhhcchhhccceEEeccccc
Confidence 467999999999999999999999999999999999999887 999999999875321 14679999999999
Q ss_pred CCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCccccccccc
Q 001400 221 VAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVG 300 (1085)
Q Consensus 221 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 300 (1085)
+|++||+||+.|+++..+... .+.+.+++++++.+||++.+|..+
T Consensus 94 ~p~ltv~eni~~~l~~~~~~~----------------------------------~~~~~~v~~~l~~~gL~~~~~~~p- 138 (242)
T d1oxxk2 94 YPNLTAFENIAFPLTNMKMSK----------------------------------EEIRKRVEEVAKILDIHHVLNHFP- 138 (242)
T ss_dssp CTTSCHHHHHHGGGTTSSCCH----------------------------------HHHHHHHHHHHHHTTCGGGTTSCG-
T ss_pred cccccHHHHhhhhhHhhcCCH----------------------------------HHHHHHHHHHHhhcChHhhhhCCh-
Confidence 999999999999876543211 012345899999999998877665
Q ss_pred CcccccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEE
Q 001400 301 DEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVIL 380 (1085)
Q Consensus 301 ~~~~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~ 380 (1085)
..|||||||||+|||||+.+|++|||||||+|||+.++.++++.++++.++. +++++.++|+..++.++||||++
T Consensus 139 ----~~LSGGqkQRvaiARaL~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~-g~tvi~vTHd~~~~~~~~dri~v 213 (242)
T d1oxxk2 139 ----RELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRL-GVTLLVVSHDPADIFAIADRVGV 213 (242)
T ss_dssp ----GGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHH-CCEEEEEESCHHHHHHHCSEEEE
T ss_pred ----hhCCHHHHhHHHHHhHHhhcccceeecCCccCCCHHHHHHHHHHHHHHHhcc-CCEEEEEECCHHHHHHhCCEEEE
Confidence 4699999999999999999999999999999999999999999999997765 45566689999999999999999
Q ss_pred ecCCeEEEecChhhHHH
Q 001400 381 LSEGQIVYQGPRVSVLD 397 (1085)
Q Consensus 381 L~~G~iv~~G~~~~~~~ 397 (1085)
|++|+|++.|+++++.+
T Consensus 214 m~~G~iv~~g~~~el~~ 230 (242)
T d1oxxk2 214 LVKGKLVQVGKPEDLYD 230 (242)
T ss_dssp EETTEEEEEECHHHHHH
T ss_pred EECCEEEEEcCHHHHHh
Confidence 99999999999999854
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=1.5e-46 Score=396.75 Aligned_cols=203 Identities=30% Similarity=0.423 Sum_probs=181.2
Q ss_pred CCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCCh------hcccceEEEEccCCCC
Q 001400 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ------ETFARISGYCEQNDIH 913 (1085)
Q Consensus 840 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~------~~~~~~~gy~~Q~~~~ 913 (1085)
++..+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.++|.++.. ...+|.+|||+|++.+
T Consensus 16 g~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~--p~~G~I~~~g~~i~~~~~~~~~~~rr~ig~vfQ~~~L 93 (242)
T d1oxxk2 16 GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDV--PSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWAL 93 (242)
T ss_dssp GTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSC--CSEEEEEETTEEEEETTEESSCGGGSCEEEEETTSCC
T ss_pred CCEEEEeceEEEECCCCEEEEECCCCCcHHHHHHHHHcCcC--CCCceEEECCEEeecCchhhcchhhccceEEeccccc
Confidence 45789999999999999999999999999999999999877 569999999987532 2245679999999999
Q ss_pred CCCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q 001400 914 SPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMD 993 (1085)
Q Consensus 914 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlD 993 (1085)
+|.+||+||+.|+...+ ..+..+.+++++++++.++|.+..+... .+|||||||||+|||||+.+|+|||||
T Consensus 94 ~p~ltv~eni~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~~~p-----~~LSGGqkQRvaiARaL~~~P~llllD 165 (242)
T d1oxxk2 94 YPNLTAFENIAFPLTNM---KMSKEEIRKRVEEVAKILDIHHVLNHFP-----RELSGAQQQRVALARALVKDPSLLLLD 165 (242)
T ss_dssp CTTSCHHHHHHGGGTTS---SCCHHHHHHHHHHHHHHTTCGGGTTSCG-----GGSCHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred cccccHHHHhhhhhHhh---cCCHHHHHHHHHHHHhhcChHhhhhCCh-----hhCCHHHHhHHHHHhHHhhcccceeec
Confidence 99999999999986543 3456677788999999999998887764 579999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHC-CceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCC
Q 001400 994 EPTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1085)
Q Consensus 994 EPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~ 1054 (1085)
|||+|||+.++..+++.|+++.++ |.|||++|||++ ++.+.|||+++|++ |++++.|+.
T Consensus 166 EPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~~-~~~~~~dri~vm~~-G~iv~~g~~ 225 (242)
T d1oxxk2 166 EPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPA-DIFAIADRVGVLVK-GKLVQVGKP 225 (242)
T ss_dssp STTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECH
T ss_pred CCccCCCHHHHHHHHHHHHHHHhccCCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEEcCH
Confidence 999999999999999999999654 999999999987 57889999999985 799999985
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.8e-46 Score=396.92 Aligned_cols=207 Identities=22% Similarity=0.326 Sum_probs=183.0
Q ss_pred cceeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCC------CceEEEEccCCC
Q 001400 146 SKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP------PRTSAYVSQQDW 219 (1085)
Q Consensus 146 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~------~~~~~yv~Q~d~ 219 (1085)
...++|+|||+.|++||+++|+|||||||||||++|+|+++|+ +|+|.++|+++..... ++.+|||+|++.
T Consensus 16 ~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~---sG~I~~~g~~i~~~~~~~~~~~rr~ig~VfQ~~~ 92 (240)
T d3dhwc1 16 RTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT---EGSVLVDGQELTTLSESELTKARRQIGMIFQHFN 92 (240)
T ss_dssp CEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCS---EEEEEETTEEECTTCHHHHHHHHHHEEECCSSCC
T ss_pred eeEEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHcCCcccc---CCceEEcCeEeeeCChhhhhhhhccccccccccc
Confidence 4457999999999999999999999999999999999999886 9999999999876543 257999999999
Q ss_pred CCCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccc
Q 001400 220 QVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLV 299 (1085)
Q Consensus 220 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~v 299 (1085)
+++.+||+||+.|+.+..+... .+.+.+++++|+.+||++.+|..+
T Consensus 93 l~~~~tv~eni~~~l~~~~~~~----------------------------------~~~~~~v~~~L~~vgL~~~~~~~~ 138 (240)
T d3dhwc1 93 LLSSRTVFGNVALPLELDNTPK----------------------------------DEVKRRVTELLSLVGLGDKHDSYP 138 (240)
T ss_dssp CCTTSBHHHHHHHHHHTTTCCT----------------------------------THHHHHHHHHHHHHSTTTTTSSCB
T ss_pred cCCCccHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhhCCh
Confidence 9999999999999877654321 112345889999999998877655
Q ss_pred cCcccccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEE
Q 001400 300 GDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVI 379 (1085)
Q Consensus 300 g~~~~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii 379 (1085)
..|||||||||+|||||+.+|++|||||||+|||+.++.+|++.|+++.++. +++++.++|+..++..+||||+
T Consensus 139 -----~~LSGG~~QRvaiAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~-g~tvi~vTHdl~~~~~~~dri~ 212 (240)
T d3dhwc1 139 -----SNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRL-GLTILLITHEMDVVKRICDCVA 212 (240)
T ss_dssp -----SCCCHHHHHHHHHHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHH-CCEEEEEBSCHHHHHHHCSEEE
T ss_pred -----hhCCHHHHHHHHHhhhhccCCCeEEeccccccCCHHHhhHHHHHHHHHHhcc-CCEEEEEcCCHHHHHHhCCEEE
Confidence 4699999999999999999999999999999999999999999999998765 4556668999999999999999
Q ss_pred EecCCeEEEecChhhH
Q 001400 380 LLSEGQIVYQGPRVSV 395 (1085)
Q Consensus 380 ~L~~G~iv~~G~~~~~ 395 (1085)
+|++|+|++.|+++++
T Consensus 213 vl~~G~iv~~G~~~ei 228 (240)
T d3dhwc1 213 VISNGELIEQDTVSEV 228 (240)
T ss_dssp EEETTEEEEEEETTTT
T ss_pred EEECCEEEEECCHHHH
Confidence 9999999999999987
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=3e-46 Score=395.09 Aligned_cols=207 Identities=27% Similarity=0.354 Sum_probs=182.4
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCC-------CCceEEEEccCCCC
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV-------PPRTSAYVSQQDWQ 220 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~-------~~~~~~yv~Q~d~~ 220 (1085)
..+|+|||+.|++||+++|+||||||||||+++|+|++.|+ +|+|.++|.++.... .++.+|||+|++.+
T Consensus 16 ~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~---sG~I~~~g~~i~~~~~~~~~~~~~r~ig~v~Q~~~L 92 (240)
T d1g2912 16 VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPS---RGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYAL 92 (240)
T ss_dssp EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCS---EEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCCC
T ss_pred EEEEcceeeEEcCCCEEEEECCCCChHHHHHHHHhcCCCCC---CCEEEECCEEecccchhhhcccccccceecccchhh
Confidence 57999999999999999999999999999999999999886 999999998864321 14679999999999
Q ss_pred CCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCccccccccc
Q 001400 221 VAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVG 300 (1085)
Q Consensus 221 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 300 (1085)
++.+||+||+.|+.+.++... .+.+.+++++++.+||++.+|..+
T Consensus 93 ~~~ltV~eni~~~~~~~~~~~----------------------------------~e~~~~v~~~l~~~~l~~~~~~~p- 137 (240)
T d1g2912 93 YPHMTVYDNIAFPLKLRKVPR----------------------------------QEIDQRVREVAELLGLTELLNRKP- 137 (240)
T ss_dssp CTTSCHHHHHHHHHHHTTCCH----------------------------------HHHHHHHHHHHHHHTCGGGTTCCG-
T ss_pred cchhhhhHhhhhhHHHcCCCH----------------------------------HHHHHHHHHHHHHcCChhHhcCCh-
Confidence 999999999999877654221 112345899999999998887655
Q ss_pred CcccccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEE
Q 001400 301 DEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVIL 380 (1085)
Q Consensus 301 ~~~~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~ 380 (1085)
+.|||||||||+|||||+.+|++|||||||+|||+.++.+|++.|+++.+.. +++|+.++|+.+++..+||||++
T Consensus 138 ----~~LSGGqkQRv~IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~-g~tvi~vTHd~~~~~~~~drv~v 212 (240)
T d1g2912 138 ----RELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQL-GVTTIYVTHDQVEAMTMGDRIAV 212 (240)
T ss_dssp ----GGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHH-TCEEEEEESCHHHHHHHCSEEEE
T ss_pred ----hhCCHHHHHHHHHHHHHhcCCCEEEecCCCcccCHHHHHHHHHHHHHHHhcc-CCEEEEEcCCHHHHHHhCCEEEE
Confidence 5699999999999999999999999999999999999999999999997765 45666689999999999999999
Q ss_pred ecCCeEEEecChhhHHH
Q 001400 381 LSEGQIVYQGPRVSVLD 397 (1085)
Q Consensus 381 L~~G~iv~~G~~~~~~~ 397 (1085)
|++|++++.|+++++.+
T Consensus 213 m~~G~iv~~G~~~el~~ 229 (240)
T d1g2912 213 MNRGVLQQVGSPDEVYD 229 (240)
T ss_dssp EETTEEEEEECHHHHHH
T ss_pred EECCEEEEEcCHHHHHh
Confidence 99999999999999854
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=1.2e-45 Score=388.44 Aligned_cols=203 Identities=25% Similarity=0.421 Sum_probs=176.4
Q ss_pred eEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCCh---hc----ccceEEEEccCCCCC
Q 001400 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ET----FARISGYCEQNDIHS 914 (1085)
Q Consensus 842 ~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~---~~----~~~~~gy~~Q~~~~~ 914 (1085)
..+|+||||+|++||++||+||||||||||+++|+|... +.+|+|+++|.++.. .. +++.+|||+|++.++
T Consensus 18 ~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~--p~sG~I~~~g~~i~~~~~~~~~~~r~~~ig~v~Q~~~l~ 95 (230)
T d1l2ta_ 18 IYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDK--PTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLI 95 (230)
T ss_dssp EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCC
T ss_pred EEEEeceEEEEcCCCEEEEECCCCCCcchhhHhccCCCC--CCcceeEECCEEcCcCChhhcchhhcceEEEEecchhhC
Confidence 468999999999999999999999999999999999876 579999999998643 11 235699999999999
Q ss_pred CCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCc-ccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q 001400 915 PGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTS-LSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMD 993 (1085)
Q Consensus 915 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlD 993 (1085)
|.+||+||+.++...+........+..+.+.++++.+++.+ ..+..+ .+|||||||||+|||||+.+|+|||||
T Consensus 96 ~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~p-----~~LSGGqkQRvaIAraL~~~P~lLllD 170 (230)
T d1l2ta_ 96 PLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKP-----NQLSGGQQQRVAIARALANNPPIILAD 170 (230)
T ss_dssp TTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCG-----GGSCHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred cCccHHHHHhHHHHHhccCCCCHHHHHHHHHHHHHhhchhhhhhcCCh-----hhCCHHHHHHHHHHhhhhcCCCEEEec
Confidence 99999999999877654445566677778888999999865 345443 579999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHC-CceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCC
Q 001400 994 EPTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1085)
Q Consensus 994 EPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~ 1054 (1085)
|||||||+.++..|++.|+++.++ |.|||++|||++ ..+.|||+++|++ |+++..|++
T Consensus 171 EPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~--~a~~~drv~~m~~-G~Iv~~g~~ 229 (230)
T d1l2ta_ 171 QPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDIN--VARFGERIIYLKD-GEVEREEKL 229 (230)
T ss_dssp STTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCHH--HHTTSSEEEEEET-TEEEEEEEC
T ss_pred CCccccCHHHHHHHHHHHHHHHHhhCCEEEEECCCHH--HHHhCCEEEEEEC-CEEEEeccC
Confidence 999999999999999999999765 999999999975 4578999999985 799998864
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=4.1e-46 Score=394.10 Aligned_cols=203 Identities=26% Similarity=0.325 Sum_probs=180.0
Q ss_pred eEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCCh------hcccceEEEEccCCCCCC
Q 001400 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ------ETFARISGYCEQNDIHSP 915 (1085)
Q Consensus 842 ~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~------~~~~~~~gy~~Q~~~~~~ 915 (1085)
.++|+||||+|++||++||+||||||||||+++|+|... +.+|+|.++|+++.. ..+++.+|||||++.+++
T Consensus 18 ~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~--p~sG~I~~~g~~i~~~~~~~~~~~rr~ig~VfQ~~~l~~ 95 (240)
T d3dhwc1 18 IQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER--PTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLS 95 (240)
T ss_dssp EEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSC--CSEEEEEETTEEECTTCHHHHHHHHHHEEECCSSCCCCT
T ss_pred EEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHcCCcc--ccCCceEEcCeEeeeCChhhhhhhhccccccccccccCC
Confidence 478999999999999999999999999999999999877 579999999998632 134567999999999999
Q ss_pred CCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCC
Q 001400 916 GLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEP 995 (1085)
Q Consensus 916 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEP 995 (1085)
.+||+||+.|+..++. .+.++.++.++++++.++|.+..+... .+|||||||||+|||||+.+|+|||||||
T Consensus 96 ~~tv~eni~~~l~~~~---~~~~~~~~~v~~~L~~vgL~~~~~~~~-----~~LSGG~~QRvaiAraL~~~P~lLllDEP 167 (240)
T d3dhwc1 96 SRTVFGNVALPLELDN---TPKDEVKRRVTELLSLVGLGDKHDSYP-----SNLSGGQKQRVAIARALASNPKVLLCDEA 167 (240)
T ss_dssp TSBHHHHHHHHHHTTT---CCTTHHHHHHHHHHHHHSTTTTTSSCB-----SCCCHHHHHHHHHHHHHHTCCSEEEEESG
T ss_pred CccHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCCHHHHHHHHHhhhhccCCCeEEeccc
Confidence 9999999999876542 334556678999999999998877654 57999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHC-CceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCCC
Q 001400 996 TSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGS 1056 (1085)
Q Consensus 996 tsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~~ 1056 (1085)
|+|||+.++..|++.|+++.++ |.|||++|||++ ++...|||+++|++ |++++.|+..+
T Consensus 168 t~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl~-~~~~~~dri~vl~~-G~iv~~G~~~e 227 (240)
T d3dhwc1 168 TSALDPATTRSILELLKDINRRLGLTILLITHEMD-VVKRICDCVAVISN-GELIEQDTVSE 227 (240)
T ss_dssp GGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCHH-HHHHHCSEEEEEET-TEEEEEEETTT
T ss_pred cccCCHHHhhHHHHHHHHHHhccCCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEEECCHHH
Confidence 9999999999999999999765 999999999986 47788999999985 79999998764
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=4.5e-46 Score=390.49 Aligned_cols=206 Identities=22% Similarity=0.263 Sum_probs=179.9
Q ss_pred ccccccCCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCCh-hcccceEEEEccCCC
Q 001400 834 QEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ-ETFARISGYCEQNDI 912 (1085)
Q Consensus 834 ~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~-~~~~~~~gy~~Q~~~ 912 (1085)
++++.|++ .+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.++|.++.. ...++.+|||+|++.
T Consensus 6 nlsk~y~~-~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~--p~sG~I~~~G~~i~~~~~~~r~ig~v~Q~~~ 82 (229)
T d3d31a2 6 SLSRKWKN-FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHV--PDSGRILLDGKDVTDLSPEKHDIAFVYQNYS 82 (229)
T ss_dssp EEEEECSS-CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSC--CSEEEEEETTEECTTSCHHHHTCEEECTTCC
T ss_pred EEEEEeCC-EEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCcC--CCCCEEEEccEeccccchhHhcceeeccccc
Confidence 33444454 48999999999999999999999999999999999877 569999999998754 234567999999999
Q ss_pred CCCCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q 001400 913 HSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFM 992 (1085)
Q Consensus 913 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illl 992 (1085)
++|.+||+||+.|+..++.... .++++++++.+++.++.+... .+|||||||||+|||||+.+|+||||
T Consensus 83 l~~~~tV~enl~~~~~~~~~~~------~~~~~~~l~~~~l~~~~~~~~-----~~LSGG~~QRvaiAraL~~~P~iLll 151 (229)
T d3d31a2 83 LFPHMNVKKNLEFGMRMKKIKD------PKRVLDTARDLKIEHLLDRNP-----LTLSGGEQQRVALARALVTNPKILLL 151 (229)
T ss_dssp CCTTSCHHHHHHHHHHHHCCCC------HHHHHHHHHHTTCTTTTTSCG-----GGSCHHHHHHHHHHHHTTSCCSEEEE
T ss_pred cCccccHHHHHHHHHhhccccH------HHHHHHHHHHhcchhhHhCCh-----hhCCHHHhcchhhhhhhhccCCceee
Confidence 9999999999999887664321 245889999999998887764 57999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHH-CCceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCC
Q 001400 993 DEPTSGLDARAAAIVMRTVRNIVN-TGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1085)
Q Consensus 993 DEPtsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~ 1055 (1085)
||||+|||+.++..+++.|+++.+ .|.|||++|||++ ++.+.|||+++|++ |++++.|+..
T Consensus 152 DEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd~~-~~~~~~drv~vm~~-G~iv~~g~~~ 213 (229)
T d3d31a2 152 DEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQT-EARIMADRIAVVMD-GKLIQVGKPE 213 (229)
T ss_dssp ESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHH-HHHHHCSEEEEESS-SCEEEEECHH
T ss_pred cCCCcCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEEEcCHH
Confidence 999999999999999999999965 5999999999987 58888999999985 7999999853
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=6.2e-45 Score=387.49 Aligned_cols=213 Identities=22% Similarity=0.294 Sum_probs=188.1
Q ss_pred cccccccccCCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCCh--hcccceEEEEc
Q 001400 831 ELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ--ETFARISGYCE 908 (1085)
Q Consensus 831 ~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~--~~~~~~~gy~~ 908 (1085)
+++++.+.++++++|+||||+|++||++||+||||||||||+++|+|... +.+|+|.++|+++.. ...++.+||||
T Consensus 4 ~v~nl~k~yg~~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~--p~~G~i~i~G~~i~~~~~~~~~~i~~vp 81 (238)
T d1vpla_ 4 VVKDLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIK--PSSGIVTVFGKNVVEEPHEVRKLISYLP 81 (238)
T ss_dssp EEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEETTTCHHHHHTTEEEEC
T ss_pred EEEeEEEEECCEEEEccceeEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCCEEEECcEecccChHHHHhhEeEee
Confidence 34555666788999999999999999999999999999999999999877 569999999998643 34567899999
Q ss_pred cCCCCCCCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCC
Q 001400 909 QNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPS 988 (1085)
Q Consensus 909 Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~ 988 (1085)
|++.+++++|+.||+.|.+.++.. ...+..+.++++++.+++.+..+..+ .+||||||||++|||||+++|+
T Consensus 82 q~~~~~~~ltv~e~l~~~~~~~~~---~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lSgG~~qrv~iA~al~~~p~ 153 (238)
T d1vpla_ 82 EEAGAYRNMQGIEYLRFVAGFYAS---SSSEIEEMVERATEIAGLGEKIKDRV-----STYSKGMVRKLLIARALMVNPR 153 (238)
T ss_dssp TTCCCCTTSBHHHHHHHHHHHHCC---CHHHHHHHHHHHHHHHCCGGGGGSBG-----GGCCHHHHHHHHHHHHHTTCCS
T ss_pred eccccCCCccHHHHHHHHHHhcCC---CHHHHHHHHHHHHHhCCCHHHHhhhh-----hhCCHHHHHHHHHHHHHhcCCC
Confidence 999999999999999988766532 34555677889999999998887765 4799999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCC
Q 001400 989 IVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1085)
Q Consensus 989 illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~ 1055 (1085)
||||||||+|||+.++..++++|+++.++|+|||++||+++ ++...|||+++|++ |++++.|+..
T Consensus 154 illLDEPt~gLD~~~~~~i~~~i~~~~~~g~tii~~tH~l~-~~~~~~drv~vl~~-G~iv~~g~~~ 218 (238)
T d1vpla_ 154 LAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNML-EVEFLCDRIALIHN-GTIVETGTVE 218 (238)
T ss_dssp EEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHH-HHTTTCSEEEEEET-TEEEEEEEHH
T ss_pred EEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcCHH
Confidence 99999999999999999999999999889999999999987 57788999999985 7999999763
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=9e-45 Score=387.15 Aligned_cols=214 Identities=22% Similarity=0.316 Sum_probs=180.6
Q ss_pred ccccccccccCCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCChh---c-ccceEE
Q 001400 830 VELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE---T-FARISG 905 (1085)
Q Consensus 830 ~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~---~-~~~~~g 905 (1085)
++++++++.|++..+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.++|+++... . .+..++
T Consensus 7 Lev~~l~k~yg~~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~--p~~G~I~~~G~~i~~~~~~~~~r~gi~ 84 (240)
T d1ji0a_ 7 LEVQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVR--AQKGKIIFNGQDITNKPAHVINRMGIA 84 (240)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEECTTCCHHHHHHTTEE
T ss_pred EEEeeEEEEECCEEEEeeeeEEECCCCEEEEECCCCCcHHHHHHHHhCCCC--CCccEEEecccccccccHHHHHHhccc
Confidence 445556666788899999999999999999999999999999999999876 5699999999986532 2 233589
Q ss_pred EEccCCCCCCCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHc-CCCcccccccCCCCCCCCCHHHHHHHHHHHHHh
Q 001400 906 YCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELV-ELTSLSGALIGLPGINGLSTEQRKRLTIAVELV 984 (1085)
Q Consensus 906 y~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~ 984 (1085)
|+||+..+++.+||+||+.+.+..+... ...++.++++++.+ ++.+..+... .+|||||||||+|||||+
T Consensus 85 ~~~q~~~l~~~ltv~en~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~~-----~~LSGG~~Qrv~iAraL~ 155 (240)
T d1ji0a_ 85 LVPEGRRIFPELTVYENLMMGAYNRKDK----EGIKRDLEWIFSLFPRLKERLKQLG-----GTLSGGEQQMLAIGRALM 155 (240)
T ss_dssp EECSSCCCCTTSBHHHHHHGGGTTCCCS----SHHHHHHHHHHHHCHHHHTTTTSBS-----SSSCHHHHHHHHHHHHHT
T ss_pred ccCcccccCCcccHHHHHHHHHHhcCCH----HHHHHHHHHHHHHhhChHHHHhCch-----hhCCHHHHHHHHHHHHHH
Confidence 9999999999999999998876544322 22334456666665 5666666553 479999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCCC
Q 001400 985 ANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGS 1056 (1085)
Q Consensus 985 ~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~~ 1056 (1085)
.+|+||||||||+|||+.++..+++.|++++++|.|||++||+++ ++.+.|||+++|++ |++++.|+..+
T Consensus 156 ~~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~~g~til~~tH~l~-~~~~~~drv~vl~~-G~iv~~g~~~e 225 (240)
T d1ji0a_ 156 SRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNAL-GALKVAHYGYVLET-GQIVLEGKASE 225 (240)
T ss_dssp TCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHH-HHHHHCSEEEEEET-TEEEEEEEHHH
T ss_pred hCCCEeeecCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcCHHH
Confidence 999999999999999999999999999999888999999999987 58899999999985 79999998754
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=1e-44 Score=381.44 Aligned_cols=206 Identities=19% Similarity=0.260 Sum_probs=173.6
Q ss_pred cceeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCCC-------ceEEEEccCC
Q 001400 146 SKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPP-------RTSAYVSQQD 218 (1085)
Q Consensus 146 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~~-------~~~~yv~Q~d 218 (1085)
....+|+|||+.|++||+++|+|||||||||||++|+|++.|+ +|+|.++|+++.....+ +.+|||+|++
T Consensus 16 ~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~---sG~I~~~g~~i~~~~~~~~~~~r~~~ig~v~Q~~ 92 (230)
T d1l2ta_ 16 EIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPT---EGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQF 92 (230)
T ss_dssp EEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHHHHHHHHHEEEECTTC
T ss_pred eeEEEEeceEEEEcCCCEEEEECCCCCCcchhhHhccCCCCCC---cceeEECCEEcCcCChhhcchhhcceEEEEecch
Confidence 3457999999999999999999999999999999999999887 99999999998766432 4699999999
Q ss_pred CCCCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcc-cccc
Q 001400 219 WQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDT-CADT 297 (1085)
Q Consensus 219 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~-~~dt 297 (1085)
.+++.+||+||+.|+...+..+.... .+...++.++|+.+||++ .++.
T Consensus 93 ~l~~~~tv~eni~~~~~~~~~~~~~~-------------------------------~~~~~~~~~~l~~~~L~~~~~~~ 141 (230)
T d1l2ta_ 93 NLIPLLTALENVELPLIFKYRGAMSG-------------------------------EERRKRALECLKMAELEERFANH 141 (230)
T ss_dssp CCCTTSCHHHHHHHHHHTCCSSCCCH-------------------------------HHHHHHHHHHHHHTTCCGGGTTC
T ss_pred hhCcCccHHHHHhHHHHHhccCCCCH-------------------------------HHHHHHHHHHHHhhchhhhhhcC
Confidence 99999999999999876543221100 011234778899999976 3555
Q ss_pred cccCcccccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCe
Q 001400 298 LVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDD 377 (1085)
Q Consensus 298 ~vg~~~~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ 377 (1085)
. +..|||||||||+|||||+.+|++|+|||||+|||+.++.+|++.|+++.+.. +++++.++|+.+++ ++|||
T Consensus 142 ~-----p~~LSGGqkQRvaIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~-g~tii~vTHd~~~a-~~~dr 214 (230)
T d1l2ta_ 142 K-----PNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEED-GKTVVVVTHDINVA-RFGER 214 (230)
T ss_dssp C-----GGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTT-CCEEEEECSCHHHH-TTSSE
T ss_pred C-----hhhCCHHHHHHHHHHhhhhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHhh-CCEEEEECCCHHHH-HhCCE
Confidence 4 45699999999999999999999999999999999999999999999998764 45555677888765 89999
Q ss_pred EEEecCCeEEEecCh
Q 001400 378 VILLSEGQIVYQGPR 392 (1085)
Q Consensus 378 ii~L~~G~iv~~G~~ 392 (1085)
|++|++|+|+++|+.
T Consensus 215 v~~m~~G~Iv~~g~~ 229 (230)
T d1l2ta_ 215 IIYLKDGEVEREEKL 229 (230)
T ss_dssp EEEEETTEEEEEEEC
T ss_pred EEEEECCEEEEeccC
Confidence 999999999999864
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=3.2e-44 Score=386.09 Aligned_cols=215 Identities=22% Similarity=0.280 Sum_probs=184.6
Q ss_pred cccccccccCCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCCh-------------
Q 001400 831 ELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ------------- 897 (1085)
Q Consensus 831 ~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~------------- 897 (1085)
+++++.+.|++.++|+||||+|++||++||+||||||||||+++|+|..+ +.+|+|.++|.++..
T Consensus 4 ev~nl~k~yg~~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~--p~~G~I~~~G~~i~~~~~~~~~~~~~~~ 81 (258)
T d1b0ua_ 4 HVIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEK--PSEGAIIVNGQNINLVRDKDGQLKVADK 81 (258)
T ss_dssp EEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEECCEEECTTSSEEESCH
T ss_pred EEEEEEEEECCEEEEcceeeEEcCCCEEEEECCCCCcHHHHHHHHHcCcc--CCCCCEEECCEEeccCCccchhcccccH
Confidence 34555566678899999999999999999999999999999999999876 569999999987632
Q ss_pred ---hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcc-cccccCCCCCCCCCHHH
Q 001400 898 ---ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSL-SGALIGLPGINGLSTEQ 973 (1085)
Q Consensus 898 ---~~~~~~~gy~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~~~~~~~~LS~Gq 973 (1085)
...++.+|||+|++.+++.+||+||+.++..... .....+.++.+.++++.+++.+. .+... .+|||||
T Consensus 82 ~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~p-----~~LSGG~ 154 (258)
T d1b0ua_ 82 NQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL--GLSKHDARERALKYLAKVGIDERAQGKYP-----VHLSGGQ 154 (258)
T ss_dssp HHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTT--CCCHHHHHHHHHHHHHHTTCCHHHHTSCG-----GGSCHHH
T ss_pred hHHHHHhcceEEEEechhhccchhcchhhhhhHHHhc--CCCHHHHHHHHHHHHHHcCCchhhhccCc-----ccccHHH
Confidence 1245679999999999999999999998743221 23456667788999999999764 34332 4799999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEecCcEEEEecC
Q 001400 974 RKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGP 1053 (1085)
Q Consensus 974 rqrl~iA~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~ 1053 (1085)
||||+|||||+.+|+||||||||+|||+.++..|++.|++++++|.|||++|||++ ++...|||+++|++ |++++.|+
T Consensus 155 ~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til~vtHdl~-~~~~~adri~vm~~-G~iv~~g~ 232 (258)
T d1b0ua_ 155 QQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG-FARHVSSHVIFLHQ-GKIEEEGD 232 (258)
T ss_dssp HHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHH-HHHHHCSEEEEEET-TEEEEEEC
T ss_pred HHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHhhhhhcccCCceEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcC
Confidence 99999999999999999999999999999999999999999988999999999987 57788999999985 79999998
Q ss_pred CCC
Q 001400 1054 LGS 1056 (1085)
Q Consensus 1054 ~~~ 1056 (1085)
..+
T Consensus 233 ~~e 235 (258)
T d1b0ua_ 233 PEQ 235 (258)
T ss_dssp HHH
T ss_pred HHH
Confidence 754
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=3e-44 Score=387.15 Aligned_cols=216 Identities=23% Similarity=0.266 Sum_probs=184.7
Q ss_pred cccccccccCCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCChh---c-ccceEEE
Q 001400 831 ELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE---T-FARISGY 906 (1085)
Q Consensus 831 ~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~---~-~~~~~gy 906 (1085)
+++++++.|++.++|+||||++++||++||+||||||||||+++|+|..+ +.+|+|.++|.++... . .++.++|
T Consensus 6 ~v~nlsk~yg~~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~--p~~G~I~~~g~~i~~~~~~~~~~~gi~~ 83 (254)
T d1g6ha_ 6 RTENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLK--ADEGRVYFENKDITNKEPAELYHYGIVR 83 (254)
T ss_dssp EEEEEEEEETTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEECTTCCHHHHHHHTEEE
T ss_pred EEEEEEEEECCeEEEcceEEEECCCCEEEEECCCCCcHHHHHHHHHCCCc--CCCcEEEECCEeccchhHHHHHHhcCCc
Confidence 34555556678899999999999999999999999999999999999876 5699999999987532 2 3445999
Q ss_pred EccCCCCCCCCCHHHHHHHhhhhcCC----------CcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHH
Q 001400 907 CEQNDIHSPGLTVLESLLFSAWLRLP----------SEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKR 976 (1085)
Q Consensus 907 ~~Q~~~~~~~~tv~e~l~~~~~~~~~----------~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqr 976 (1085)
+||++.+++.+||+||+.++...+.. .....+...+.+.++++.+++.+..+..+ .+||||||||
T Consensus 84 v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~Qr 158 (254)
T d1g6ha_ 84 TFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKA-----GELSGGQMKL 158 (254)
T ss_dssp CCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBG-----GGSCHHHHHH
T ss_pred cCCccccCCCCeeeeeeeehhhhccccchhhhhhhcccccHHHHHHHHHHHHHhcCcchhccCch-----hhCCcHHHHH
Confidence 99999999999999999987533211 11123344567888999999988887765 4799999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCC
Q 001400 977 LTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1085)
Q Consensus 977 l~iA~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~ 1055 (1085)
|+|||||+.+|++|||||||+|||+.++..+++.|++++++|.|||++|||++ ++.+.|||+++|++ |++++.|+..
T Consensus 159 v~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl~-~~~~~~Drv~vm~~-G~iv~~g~~~ 235 (254)
T d1g6ha_ 159 VEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLD-IVLNYIDHLYVMFN-GQIIAEGRGE 235 (254)
T ss_dssp HHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCS-TTGGGCSEEEEEET-TEEEEEEESH
T ss_pred HHHHHHHHhCcCchhhcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH-HHHHhCCEEEEEeC-CEEEEEecHH
Confidence 99999999999999999999999999999999999999888999999999998 58899999999985 7999999864
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=4.8e-44 Score=376.55 Aligned_cols=210 Identities=24% Similarity=0.381 Sum_probs=180.2
Q ss_pred cceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCC-CceEEEEccCCCCCCCCCHHHHHH
Q 001400 153 DLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP-PRTSAYVSQQDWQVAEMTVRETLD 231 (1085)
Q Consensus 153 ~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~E~l~ 231 (1085)
|||+.++ +++++|+|||||||||||++|+|+++|+ +|+|.+||.++....+ +|.+|||+|++.++|++||+||+.
T Consensus 17 ~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~---~G~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~ltV~enl~ 92 (240)
T d2onka1 17 NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPD---RGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIA 92 (240)
T ss_dssp EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHH
T ss_pred EEEEEeC-CEEEEEECCCCChHHHHHHHHHcCCCCC---ceEEEECCEECCcCCHHHcCceeeccchhhcccchhhHhhh
Confidence 7999995 6899999999999999999999999887 9999999999877654 478999999999999999999999
Q ss_pred HhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCcccccCchhh
Q 001400 232 FAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQ 311 (1085)
Q Consensus 232 f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGq 311 (1085)
|+.+.. . +. +.+.+++++++.+||++.+|..+ ..|||||
T Consensus 93 ~~l~~~--~----------~~------------------------~~~~~v~~~l~~~gl~~~~~~~~-----~~LSGG~ 131 (240)
T d2onka1 93 YGLRNV--E----------RV------------------------ERDRRVREMAEKLGIAHLLDRKP-----ARLSGGE 131 (240)
T ss_dssp TTCTTS--C----------HH------------------------HHHHHHHHHHHTTTCTTTTTCCG-----GGSCHHH
T ss_pred hhhccc--C----------HH------------------------HHHHHHHHHHHhcCcHhhhhCCh-----hhCCHHH
Confidence 975321 0 00 11235889999999998877655 5699999
Q ss_pred hhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEecCCeEEEecC
Q 001400 312 KKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQGP 391 (1085)
Q Consensus 312 kqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~~G~iv~~G~ 391 (1085)
||||+|||||+.+|++|+|||||+|||+.++..+++.++++.+..+ ++++.++|+..++..+||+|++|++|++++.|+
T Consensus 132 kQRvaiAral~~~P~illlDEPts~LD~~~~~~i~~~i~~l~~~~g-~tvi~vtHd~~~~~~~adri~vm~~G~ii~~G~ 210 (240)
T d2onka1 132 RQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFD-VPILHVTHDLIEAAMLADEVAVMLNGRIVEKGK 210 (240)
T ss_dssp HHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHT-CCEEEEESCHHHHHHHCSEEEEEETTEEEEEEC
T ss_pred HHHHHHHHHHhccCCceEecCccccCCHHHHHHHHHHHHHHHHhcC-CeEEEEeCCHHHHHHhCCEEEEEECCEEEEEec
Confidence 9999999999999999999999999999999999999999987654 456668899999999999999999999999999
Q ss_pred hhhHHHHHHhCCCCCCCCCChhHHHH
Q 001400 392 RVSVLDFFASMGFSCPKRKNVADFLQ 417 (1085)
Q Consensus 392 ~~~~~~~f~~~G~~~p~~~~~adfl~ 417 (1085)
++++.+ |+...++.|+.
T Consensus 211 ~~el~~---------~~~~~v~~fl~ 227 (240)
T d2onka1 211 LKELFS---------AKNGEVAEFLS 227 (240)
T ss_dssp HHHHHH---------SCCSSHHHHGG
T ss_pred HHHHhc---------CCCHHHHHHhC
Confidence 999864 33445666653
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=2.2e-43 Score=371.45 Aligned_cols=194 Identities=24% Similarity=0.365 Sum_probs=172.0
Q ss_pred eeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCCh-hcccceEEEEccCCCCCCCCCHHHHHHH
Q 001400 847 NVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ-ETFARISGYCEQNDIHSPGLTVLESLLF 925 (1085)
Q Consensus 847 ~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~-~~~~~~~gy~~Q~~~~~~~~tv~e~l~~ 925 (1085)
||||++. +|+++|+||||||||||+++|+|... +.+|+|.++|.++.. ...+|.+|||||++.++|.+||+||+.|
T Consensus 17 ~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~--p~~G~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~ltV~enl~~ 93 (240)
T d2onka1 17 NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVK--PDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAY 93 (240)
T ss_dssp EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHHT
T ss_pred EEEEEeC-CEEEEEECCCCChHHHHHHHHHcCCC--CCceEEEECCEECCcCCHHHcCceeeccchhhcccchhhHhhhh
Confidence 8999995 68999999999999999999999877 569999999998754 2345789999999999999999999998
Q ss_pred hhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHH
Q 001400 926 SAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAA 1005 (1085)
Q Consensus 926 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEPtsgLD~~~~~ 1005 (1085)
+. + .....+.+++++++++.+++.+..+... .+|||||||||+|||||+.+|+||||||||+|||+.++.
T Consensus 94 ~l--~---~~~~~~~~~~v~~~l~~~gl~~~~~~~~-----~~LSGG~kQRvaiAral~~~P~illlDEPts~LD~~~~~ 163 (240)
T d2onka1 94 GL--R---NVERVERDRRVREMAEKLGIAHLLDRKP-----ARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKG 163 (240)
T ss_dssp TC--T---TSCHHHHHHHHHHHHHTTTCTTTTTCCG-----GGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHH
T ss_pred hh--c---ccCHHHHHHHHHHHHHhcCcHhhhhCCh-----hhCCHHHHHHHHHHHHHhccCCceEecCccccCCHHHHH
Confidence 64 2 2344566678999999999998887764 589999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHC-CceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCC
Q 001400 1006 IVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1085)
Q Consensus 1006 ~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~ 1055 (1085)
.+++.|+++.++ |.|||++|||++ ++.+.|||+++|++ |++++.|+..
T Consensus 164 ~i~~~i~~l~~~~g~tvi~vtHd~~-~~~~~adri~vm~~-G~ii~~G~~~ 212 (240)
T d2onka1 164 VLMEELRFVQREFDVPILHVTHDLI-EAAMLADEVAVMLN-GRIVEKGKLK 212 (240)
T ss_dssp HHHHHHHHHHHHHTCCEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECHH
T ss_pred HHHHHHHHHHHhcCCeEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEecHH
Confidence 999999999765 999999999987 58888999999985 7999999864
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=5.3e-43 Score=372.81 Aligned_cols=209 Identities=24% Similarity=0.380 Sum_probs=168.3
Q ss_pred ceeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCC---CceEEEEccCCCCCCC
Q 001400 147 KLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP---PRTSAYVSQQDWQVAE 223 (1085)
Q Consensus 147 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~ 223 (1085)
...+|+|||+.|++|+.++|+||||||||||+++|+|+++|. +|+|.+||+++..... ++.++||+|++++|+
T Consensus 15 ~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~- 90 (241)
T d2pmka1 15 SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPE---NGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLN- 90 (241)
T ss_dssp SCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEETTTSCHHHHHHHEEEECSSCCCTT-
T ss_pred CcceEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCC---CCEEEECCEEecccchhhhhceEEEEecccccCC-
Confidence 457999999999999999999999999999999999999886 9999999999987653 468999999998665
Q ss_pred CCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCcc
Q 001400 224 MTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEM 303 (1085)
Q Consensus 224 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 303 (1085)
.||+|||.|+... ...+...+.++ ..+ ..+ ....++...+|.+|..
T Consensus 91 ~Ti~eNi~~~~~~----~~~~~~~~~~~---~~~------------------------~~~--~i~~~~~~~~t~i~~~- 136 (241)
T d2pmka1 91 RSIIDNISLANPG----MSVEKVIYAAK---LAG------------------------AHD--FISELREGYNTIVGEQ- 136 (241)
T ss_dssp SBHHHHHCTTSTT----CCHHHHHHHHH---HHT------------------------CHH--HHTTSTTGGGSBCSTT-
T ss_pred ccccccccccCcc----ccHHHHHHHHH---HHh------------------------hHH--HHHhhhcchhhhcCCC-
Confidence 6999999875321 11111111110 000 011 1224567788999864
Q ss_pred cccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEecC
Q 001400 304 LKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSE 383 (1085)
Q Consensus 304 ~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~~ 383 (1085)
...|||||||||+|||||+.+|+||+||||||+||+.++..|++.|+++.+ ++ |+|.++|....+ ..||+|++|++
T Consensus 137 g~~LSGGq~QRvalARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~--~~-Tvi~itH~l~~~-~~~D~i~vl~~ 212 (241)
T d2pmka1 137 GAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK--GR-TVIIIAHRLSTV-KNADRIIVMEK 212 (241)
T ss_dssp TTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHT--TS-EEEEECSSGGGG-TTSSEEEEEET
T ss_pred CCccCHHHHHHHhhhhhhhcccchhhhhCCccccCHHHHHHHHHHHHHHhC--CC-EEEEEECCHHHH-HhCCEEEEEEC
Confidence 567999999999999999999999999999999999999999999999864 34 455577877654 78999999999
Q ss_pred CeEEEecChhhHHH
Q 001400 384 GQIVYQGPRVSVLD 397 (1085)
Q Consensus 384 G~iv~~G~~~~~~~ 397 (1085)
|+|+++|+++++++
T Consensus 213 G~Iv~~G~~~ell~ 226 (241)
T d2pmka1 213 GKIVEQGKHKELLS 226 (241)
T ss_dssp TEEEEEECHHHHHH
T ss_pred CEEEEECCHHHHHh
Confidence 99999999999864
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3.7e-43 Score=377.10 Aligned_cols=213 Identities=24% Similarity=0.367 Sum_probs=171.2
Q ss_pred cceeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCC---CceEEEEccCCCCCC
Q 001400 146 SKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP---PRTSAYVSQQDWQVA 222 (1085)
Q Consensus 146 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~---~~~~~yv~Q~d~~~~ 222 (1085)
.++.+|+|||+.|++||+++|+||||||||||+++|+|++.|. +|+|.+||.++.+... ++.++||+|++.+|+
T Consensus 25 ~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~ 101 (251)
T d1jj7a_ 25 PDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPT---GGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFG 101 (251)
T ss_dssp TTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEEGGGBCHHHHHHHEEEECSSCCCCS
T ss_pred CCCEeEeceEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCC---cCEEEECCEecchhhhHHHHHHhhhccccccccC
Confidence 4567999999999999999999999999999999999999886 9999999999876653 478999999998775
Q ss_pred CCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCc
Q 001400 223 EMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDE 302 (1085)
Q Consensus 223 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 302 (1085)
.||+||+.|+..... ......+.+.. .+ ... ...+|++..+|.+++
T Consensus 102 -~tv~eni~~g~~~~~---~~~~~~~~~~~---~~------------------------~~~--~i~~l~~g~~~~i~~- 147 (251)
T d1jj7a_ 102 -RSLQENIAYGLTQKP---TMEEITAAAVK---SG------------------------AHS--FISGLPQGYDTEVDE- 147 (251)
T ss_dssp -SBHHHHHHCSCSSCC---CHHHHHHHHHH---HT------------------------CHH--HHHTSTTGGGCBCCS-
T ss_pred -cchhhhhhhhhcccc---hHHHHHHHHHH---HH------------------------HHH--HHHhccccchhhHhc-
Confidence 699999998643211 00111110000 00 111 133577788899975
Q ss_pred ccccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEec
Q 001400 303 MLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLS 382 (1085)
Q Consensus 303 ~~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~ 382 (1085)
....|||||||||+|||||+.+|+||+||||||+||+.+..+|++.|+++.+..+.| ++.++|+...+ +.||+|++|+
T Consensus 148 ~~~~LSGGqkQRvaiARal~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~T-vi~itH~l~~~-~~aDrI~vl~ 225 (251)
T d1jj7a_ 148 AGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRS-VLLITQHLSLV-EQADHILFLE 225 (251)
T ss_dssp SCSSSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCE-EEEECSCHHHH-HTCSEEEEEE
T ss_pred cCccCChhHceEEEEeeccccCCcEEEecCcCcccChhhHHHHHHHHHHHhhhcCCE-EEEEeCCHHHH-HhCCEEEEEE
Confidence 456899999999999999999999999999999999999999999999877654444 55577887654 6799999999
Q ss_pred CCeEEEecChhhHHH
Q 001400 383 EGQIVYQGPRVSVLD 397 (1085)
Q Consensus 383 ~G~iv~~G~~~~~~~ 397 (1085)
+|+|+++|+++++++
T Consensus 226 ~G~iv~~Gt~~eLl~ 240 (251)
T d1jj7a_ 226 GGAIREGGTHQQLME 240 (251)
T ss_dssp TTEEEEEECHHHHHH
T ss_pred CCEEEEECCHHHHHh
Confidence 999999999999875
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=1.1e-42 Score=370.07 Aligned_cols=208 Identities=25% Similarity=0.293 Sum_probs=181.8
Q ss_pred ceeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCC--CCceEEEEccCCCCCCCC
Q 001400 147 KLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV--PPRTSAYVSQQDWQVAEM 224 (1085)
Q Consensus 147 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~l 224 (1085)
+++||+|||+.|++||+++|+||||||||||+++|+|++.|+ +|+|.++|+++.+.. .++.++||||++.+++++
T Consensus 14 ~~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~---~G~i~i~G~~i~~~~~~~~~~i~~vpq~~~~~~~l 90 (238)
T d1vpla_ 14 KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPS---SGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNM 90 (238)
T ss_dssp TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEETTTCHHHHHTTEEEECTTCCCCTTS
T ss_pred CEEEEccceeEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CCEEEECcEecccChHHHHhhEeEeeeccccCCCc
Confidence 357999999999999999999999999999999999999887 999999999875432 246799999999999999
Q ss_pred CHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCccc
Q 001400 225 TVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEML 304 (1085)
Q Consensus 225 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 304 (1085)
||+||+.|...+.+... .+....++.+++.++|.+..+..++
T Consensus 91 tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~---- 132 (238)
T d1vpla_ 91 QGIEYLRFVAGFYASSS----------------------------------SEIEEMVERATEIAGLGEKIKDRVS---- 132 (238)
T ss_dssp BHHHHHHHHHHHHCCCH----------------------------------HHHHHHHHHHHHHHCCGGGGGSBGG----
T ss_pred cHHHHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHhCCCHHHHhhhhh----
Confidence 99999999776543210 0112347888999999988887664
Q ss_pred ccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEecCC
Q 001400 305 KGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEG 384 (1085)
Q Consensus 305 ~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~~G 384 (1085)
.|||||||||+|||||+++|++|||||||+|||+.++.+|++.++++++. +++|+.++|+.+++..+||||++|++|
T Consensus 133 -~lSgG~~qrv~iA~al~~~p~illLDEPt~gLD~~~~~~i~~~i~~~~~~--g~tii~~tH~l~~~~~~~drv~vl~~G 209 (238)
T d1vpla_ 133 -TYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQE--GLTILVSSHNMLEVEFLCDRIALIHNG 209 (238)
T ss_dssp -GCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT--TCEEEEEECCHHHHTTTCSEEEEEETT
T ss_pred -hCCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhc--CCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 59999999999999999999999999999999999999999999998764 456666889999999999999999999
Q ss_pred eEEEecChhhHHHH
Q 001400 385 QIVYQGPRVSVLDF 398 (1085)
Q Consensus 385 ~iv~~G~~~~~~~~ 398 (1085)
++++.|+++++.+.
T Consensus 210 ~iv~~g~~~el~~~ 223 (238)
T d1vpla_ 210 TIVETGTVEELKER 223 (238)
T ss_dssp EEEEEEEHHHHHHH
T ss_pred EEEEEcCHHHHHhc
Confidence 99999999999764
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=9.3e-43 Score=371.51 Aligned_cols=204 Identities=26% Similarity=0.370 Sum_probs=174.4
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCC----CceEEEEccCCCCCCC
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP----PRTSAYVSQQDWQVAE 223 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 223 (1085)
+++|+||||.|++||+++|+||||||||||+++|+|.++|+ +|+|.++|+++..... +..++|++|+..+|+.
T Consensus 19 ~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~---~G~I~~~G~~i~~~~~~~~~r~gi~~~~q~~~l~~~ 95 (240)
T d1ji0a_ 19 IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQ---KGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPE 95 (240)
T ss_dssp EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTT
T ss_pred EEEEeeeeEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ccEEEecccccccccHHHHHHhcccccCcccccCCc
Confidence 57999999999999999999999999999999999999887 9999999999876543 2348999999999999
Q ss_pred CCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHh-CCcccccccccCc
Q 001400 224 MTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKIL-GLDTCADTLVGDE 302 (1085)
Q Consensus 224 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~l-gL~~~~dt~vg~~ 302 (1085)
+||+||+.+++....... ..+..++.+++.+ +|.+.+|..++
T Consensus 96 ltv~en~~~~~~~~~~~~-----------------------------------~~~~~~~~~~~~~~~l~~~~~~~~~-- 138 (240)
T d1ji0a_ 96 LTVYENLMMGAYNRKDKE-----------------------------------GIKRDLEWIFSLFPRLKERLKQLGG-- 138 (240)
T ss_dssp SBHHHHHHGGGTTCCCSS-----------------------------------HHHHHHHHHHHHCHHHHTTTTSBSS--
T ss_pred ccHHHHHHHHHHhcCCHH-----------------------------------HHHHHHHHHHHHhhChHHHHhCchh--
Confidence 999999988764332110 0112245555555 67777776655
Q ss_pred ccccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEec
Q 001400 303 MLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLS 382 (1085)
Q Consensus 303 ~~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~ 382 (1085)
.|||||||||+|||||+.+|++|+|||||+|||+.++.+|++.++++++. +++|+.++|+.+++.++||||++|+
T Consensus 139 ---~LSGG~~Qrv~iAraL~~~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~~--g~til~~tH~l~~~~~~~drv~vl~ 213 (240)
T d1ji0a_ 139 ---TLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQE--GTTILLVEQNALGALKVAHYGYVLE 213 (240)
T ss_dssp ---SSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHT--TCCEEEEESCHHHHHHHCSEEEEEE
T ss_pred ---hCCHHHHHHHHHHHHHHhCCCEeeecCCCcCCCHHHHHHHHHHHHHHHhC--CCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 59999999999999999999999999999999999999999999999764 4566668899999999999999999
Q ss_pred CCeEEEecChhhHH
Q 001400 383 EGQIVYQGPRVSVL 396 (1085)
Q Consensus 383 ~G~iv~~G~~~~~~ 396 (1085)
+|++++.|+++++.
T Consensus 214 ~G~iv~~g~~~el~ 227 (240)
T d1ji0a_ 214 TGQIVLEGKASELL 227 (240)
T ss_dssp TTEEEEEEEHHHHH
T ss_pred CCEEEEEcCHHHHh
Confidence 99999999999885
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.6e-42 Score=367.45 Aligned_cols=211 Identities=26% Similarity=0.405 Sum_probs=169.7
Q ss_pred eeeccceeeeeccccccccccccCCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCC
Q 001400 817 MAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKR 896 (1085)
Q Consensus 817 ~~~~~~~y~v~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~ 896 (1085)
+.|+|++|.++ .+...+|+||||+|++||++||+|+||||||||+++|+|... +.+|+|.+||+++.
T Consensus 2 I~~~nvsf~Y~-----------~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~--p~~G~I~i~g~~i~ 68 (241)
T d2pmka1 2 ITFRNIRFRYK-----------PDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI--PENGQVLIDGHDLA 68 (241)
T ss_dssp EEEEEEEEESS-----------TTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEETT
T ss_pred eEEEEEEEEeC-----------CCCcceEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCC--CCCCEEEECCEEec
Confidence 45667766652 145679999999999999999999999999999999999876 56999999999875
Q ss_pred h---hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCc-------ccccccCCCCC
Q 001400 897 Q---ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTS-------LSGALIGLPGI 966 (1085)
Q Consensus 897 ~---~~~~~~~gy~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~~~~~ 966 (1085)
. ..+++.+|||+|++.+++ .||+||+.|+.. .... +.++++++..++.+ ..+..++.. +
T Consensus 69 ~~~~~~lr~~i~~v~Q~~~lf~-~Ti~eNi~~~~~-----~~~~----~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~-g 137 (241)
T d2pmka1 69 LADPNWLRRQVGVVLQDNVLLN-RSIIDNISLANP-----GMSV----EKVIYAAKLAGAHDFISELREGYNTIVGEQ-G 137 (241)
T ss_dssp TSCHHHHHHHEEEECSSCCCTT-SBHHHHHCTTST-----TCCH----HHHHHHHHHHTCHHHHTTSTTGGGSBCSTT-T
T ss_pred ccchhhhhceEEEEecccccCC-ccccccccccCc-----cccH----HHHHHHHHHHhhHHHHHhhhcchhhhcCCC-C
Confidence 3 457788999999998775 599999987521 1111 12334444444422 223333332 3
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEecCc
Q 001400 967 NGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGG 1046 (1085)
Q Consensus 967 ~~LS~Gqrqrl~iA~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~gG 1046 (1085)
..|||||||||+|||||+++|+|||||||||+||+.+++.|++.|+++. +|+|||+|||+++ ..+.||+|++|+ +|
T Consensus 138 ~~LSGGq~QRvalARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~-~~~Tvi~itH~l~--~~~~~D~i~vl~-~G 213 (241)
T d2pmka1 138 AGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC-KGRTVIIIAHRLS--TVKNADRIIVME-KG 213 (241)
T ss_dssp TCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHH-TTSEEEEECSSGG--GGTTSSEEEEEE-TT
T ss_pred CccCHHHHHHHhhhhhhhcccchhhhhCCccccCHHHHHHHHHHHHHHh-CCCEEEEEECCHH--HHHhCCEEEEEE-CC
Confidence 5799999999999999999999999999999999999999999999985 5899999999986 447899999998 58
Q ss_pred EEEEecCCC
Q 001400 1047 ELIYAGPLG 1055 (1085)
Q Consensus 1047 ~~~~~g~~~ 1055 (1085)
++++.|+..
T Consensus 214 ~Iv~~G~~~ 222 (241)
T d2pmka1 214 KIVEQGKHK 222 (241)
T ss_dssp EEEEEECHH
T ss_pred EEEEECCHH
Confidence 999999864
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=1.9e-42 Score=372.31 Aligned_cols=207 Identities=22% Similarity=0.224 Sum_probs=176.1
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCC----------------CceE
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP----------------PRTS 211 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~----------------~~~~ 211 (1085)
.++|+||||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|.++....+ ++.+
T Consensus 15 ~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~---~G~I~~~G~~i~~~~~~~~~~~~~~~~~~~~~r~~i 91 (258)
T d1b0ua_ 15 HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPS---EGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRL 91 (258)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHE
T ss_pred EEEEcceeeEEcCCCEEEEECCCCCcHHHHHHHHHcCccCC---CCCEEECCEEeccCCccchhcccccHhHHHHHhcce
Confidence 46999999999999999999999999999999999999876 9999999998754321 2569
Q ss_pred EEEccCCCCCCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCC
Q 001400 212 AYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGL 291 (1085)
Q Consensus 212 ~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL 291 (1085)
|||+|++.+++.+||.||+.|+........+ .+...++.++++.+||
T Consensus 92 g~vfQ~~~l~~~~tv~env~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l 138 (258)
T d1b0ua_ 92 TMVFQHFNLWSHMTVLENVMEAPIQVLGLSK---------------------------------HDARERALKYLAKVGI 138 (258)
T ss_dssp EEECSSCCCCTTSCHHHHHHHHHHHTTCCCH---------------------------------HHHHHHHHHHHHHTTC
T ss_pred EEEEechhhccchhcchhhhhhHHHhcCCCH---------------------------------HHHHHHHHHHHHHcCC
Confidence 9999999999999999999986432110000 0112357889999999
Q ss_pred ccc-ccccccCcccccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhH
Q 001400 292 DTC-ADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPE 370 (1085)
Q Consensus 292 ~~~-~dt~vg~~~~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~ 370 (1085)
.+. .+.. +..|||||||||+|||||+.+|++|||||||+|||+.++.+|++.|+++++. + ++|+.++|+.++
T Consensus 139 ~~~~~~~~-----p~~LSGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~-g-~til~vtHdl~~ 211 (258)
T d1b0ua_ 139 DERAQGKY-----PVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEE-G-KTMVVVTHEMGF 211 (258)
T ss_dssp CHHHHTSC-----GGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHT-T-CCEEEECSCHHH
T ss_pred chhhhccC-----cccccHHHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHhhhhhccc-C-CceEEEeCCHHH
Confidence 764 3443 4569999999999999999999999999999999999999999999999764 4 556778999999
Q ss_pred HHhhcCeEEEecCCeEEEecChhhHHH
Q 001400 371 AYELFDDVILLSEGQIVYQGPRVSVLD 397 (1085)
Q Consensus 371 ~~~~~D~ii~L~~G~iv~~G~~~~~~~ 397 (1085)
+..+||||++|++|+|++.|+++++..
T Consensus 212 ~~~~adri~vm~~G~iv~~g~~~ev~~ 238 (258)
T d1b0ua_ 212 ARHVSSHVIFLHQGKIEEEGDPEQVFG 238 (258)
T ss_dssp HHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999999999999999999999854
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=1.2e-42 Score=374.63 Aligned_cols=219 Identities=23% Similarity=0.306 Sum_probs=182.1
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCCC----ceEEEEccCCCCCCC
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPP----RTSAYVSQQDWQVAE 223 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~~----~~~~yv~Q~d~~~~~ 223 (1085)
.++|+|||+++++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++....+. +.++|++|++.++++
T Consensus 17 ~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~gi~~v~Q~~~~~~~ 93 (254)
T d1g6ha_ 17 FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD---EGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKE 93 (254)
T ss_dssp EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGGG
T ss_pred eEEEcceEEEECCCCEEEEECCCCCcHHHHHHHHHCCCcCC---CcEEEECCEeccchhHHHHHHhcCCccCCccccCCC
Confidence 56999999999999999999999999999999999999887 99999999998766542 359999999999999
Q ss_pred CCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCcc
Q 001400 224 MTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEM 303 (1085)
Q Consensus 224 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 303 (1085)
+||+||+.++....+..... ..-.... .+ .......+++.+++.+++.+.+|+.++
T Consensus 94 ltv~enl~~~~~~~~~~~~~-------~~~~~~~-~~-------------~~~~~~~~~~~~l~~~~l~~~~~~~~~--- 149 (254)
T d1g6ha_ 94 MTVLENLLIGEICPGESPLN-------SLFYKKW-IP-------------KEEEMVEKAFKILEFLKLSHLYDRKAG--- 149 (254)
T ss_dssp SBHHHHHHGGGTSTTSCHHH-------HHHHCSS-CC-------------CCHHHHHHHHHHHHHTTCGGGTTSBGG---
T ss_pred Ceeeeeeeehhhhccccchh-------hhhhhcc-cc-------------cHHHHHHHHHHHHHhcCcchhccCchh---
Confidence 99999999976544321100 0000000 00 111123457889999999998887765
Q ss_pred cccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEecC
Q 001400 304 LKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSE 383 (1085)
Q Consensus 304 ~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~~ 383 (1085)
.|||||||||+|||||+.+|++|+|||||+|||+.++.+|++.+++++.. +++|+.++|+.+++.++||||++|++
T Consensus 150 --~LSgG~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~--g~til~vsHdl~~~~~~~Drv~vm~~ 225 (254)
T d1g6ha_ 150 --ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAK--GITFLIIEHRLDIVLNYIDHLYVMFN 225 (254)
T ss_dssp --GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT--TCEEEEECSCCSTTGGGCSEEEEEET
T ss_pred --hCCcHHHHHHHHHHHHHhCcCchhhcCCcccCCHHHHHHHHHHHHHHHHC--CCEEEEEeCcHHHHHHhCCEEEEEeC
Confidence 59999999999999999999999999999999999999999999998653 56677789999999999999999999
Q ss_pred CeEEEecChhhHHH
Q 001400 384 GQIVYQGPRVSVLD 397 (1085)
Q Consensus 384 G~iv~~G~~~~~~~ 397 (1085)
|++++.|+++++.+
T Consensus 226 G~iv~~g~~~e~~~ 239 (254)
T d1g6ha_ 226 GQIIAEGRGEEEIK 239 (254)
T ss_dssp TEEEEEEESHHHHH
T ss_pred CEEEEEecHHHHhh
Confidence 99999999987643
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=5e-43 Score=374.08 Aligned_cols=209 Identities=23% Similarity=0.320 Sum_probs=167.6
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCC---CCceEEEEccCCCCCCCC
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV---PPRTSAYVSQQDWQVAEM 224 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~---~~~~~~yv~Q~d~~~~~l 224 (1085)
+++|+|||+.|+||++++|+||||||||||+++|+|++.|. +|+|.+||.++.+.. .++.++||+|++.+|+.
T Consensus 15 ~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~- 90 (242)
T d1mv5a_ 15 EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPT---AGEITIDGQPIDNISLENWRSQIGFVSQDSAIMAG- 90 (242)
T ss_dssp SCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCS---BSCEEETTEESTTTSCSCCTTTCCEECCSSCCCCE-
T ss_pred CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHHhhCCC---CCEEEECCEEeccccHHHHHhheEEEccccccCCc-
Confidence 36999999999999999999999999999999999999886 999999999987654 35789999999987765
Q ss_pred CHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCccc
Q 001400 225 TVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEML 304 (1085)
Q Consensus 225 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 304 (1085)
||+||+.++..... . .+...+.. +..... -....+++..+|.+|+. .
T Consensus 91 ti~eNi~~~~~~~~--~-~~~~~~~~---~~~~~~--------------------------~~~~~~~~~~~~~i~~~-g 137 (242)
T d1mv5a_ 91 TIRENLTYGLEGDY--T-DEDLWQVL---DLAFAR--------------------------SFVENMPDQLNTEVGER-G 137 (242)
T ss_dssp EHHHHTTSCTTSCS--C-HHHHHHHH---HHHTCT--------------------------TTTTSSTTGGGCEESTT-S
T ss_pred chhhheeccccccc--c-hhhHHHHH---HHHHhh--------------------------hhhccCcccccccccCC-C
Confidence 99999987533211 0 00000000 000000 00224566788999865 4
Q ss_pred ccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEecCC
Q 001400 305 KGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEG 384 (1085)
Q Consensus 305 ~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~~G 384 (1085)
.+|||||||||+|||||+.+|+||+||||||+||+.++..|++.|+++.+ ++| ++.++|....+ ..||+|++|++|
T Consensus 138 ~~LSGGqkQRv~iARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~--~~T-vi~itH~l~~~-~~~D~i~vl~~G 213 (242)
T d1mv5a_ 138 VKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMK--GRT-TLVIAHRLSTI-VDADKIYFIEKG 213 (242)
T ss_dssp BCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHHT--TSE-EEEECCSHHHH-HHCSEEEEEETT
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHcC--CCE-EEEEECCHHHH-HhCCEEEEEECC
Confidence 57999999999999999999999999999999999999999999999864 444 55577887665 569999999999
Q ss_pred eEEEecChhhHHH
Q 001400 385 QIVYQGPRVSVLD 397 (1085)
Q Consensus 385 ~iv~~G~~~~~~~ 397 (1085)
+|+++|+++++++
T Consensus 214 ~iv~~G~~~eLl~ 226 (242)
T d1mv5a_ 214 QITGSGKHNELVA 226 (242)
T ss_dssp EECCCSCHHHHHH
T ss_pred EEEEECCHHHHHh
Confidence 9999999999875
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=7.7e-42 Score=366.42 Aligned_cols=209 Identities=25% Similarity=0.384 Sum_probs=168.3
Q ss_pred ceeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCC---CceEEEEccCCCCCCC
Q 001400 147 KLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP---PRTSAYVSQQDWQVAE 223 (1085)
Q Consensus 147 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~ 223 (1085)
..++|+|||+.|++|+.++|+||||||||||+++|+|++.|. +|+|.++|.++.+... ++.++||+|++.+|+
T Consensus 30 ~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~- 105 (255)
T d2hyda1 30 EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVT---SGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFS- 105 (255)
T ss_dssp SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCS---EEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCS-
T ss_pred CCcceeceEEEEcCCCEEEEECCCCCcHHHHHHHHHhcCCcc---ccccccCCEEcccCCHHHhhheeeeeeccccCCC-
Confidence 357999999999999999999999999999999999999886 9999999999876643 478999999998765
Q ss_pred CCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCcc
Q 001400 224 MTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEM 303 (1085)
Q Consensus 224 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 303 (1085)
.||+|||.|+.... ..+.+.+++ +..+ ..+. ...|++..||.+|+.
T Consensus 106 ~Ti~eNi~~g~~~~----~~~~~~~al---~~~~------------------------l~~~--i~~lp~gl~t~i~~~- 151 (255)
T d2hyda1 106 DTVKENILLGRPTA----TDEEVVEAA---KMAN------------------------AHDF--IMNLPQGYDTEVGER- 151 (255)
T ss_dssp SBHHHHHGGGCSSC----CHHHHHHHH---HHTT------------------------CHHH--HHTSTTGGGCBCCGG-
T ss_pred CCHHHHHhccCcCC----CHHHHHHHH---HHhC------------------------CHHH--HHhccccccchhcCC-
Confidence 69999998863210 011111110 0000 0111 235677889999974
Q ss_pred cccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEecC
Q 001400 304 LKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSE 383 (1085)
Q Consensus 304 ~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~~ 383 (1085)
..+|||||||||+|||||+.+|+||+||||||+||+.+...|++.|+++.+ ++|+ |.++|.... ...||+|++|++
T Consensus 152 g~~LSgGq~QRi~iARal~~~p~ililDEpts~LD~~t~~~i~~~l~~l~~--~~Tv-I~itH~~~~-~~~~D~ii~l~~ 227 (255)
T d2hyda1 152 GVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSK--DRTT-LIVAHRLST-ITHADKIVVIEN 227 (255)
T ss_dssp GTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT--TSEE-EEECSSGGG-TTTCSEEEEEET
T ss_pred CCCcCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhc--CCEE-EEEeCCHHH-HHhCCEEEEEEC
Confidence 457999999999999999999999999999999999999999999998754 4554 456777765 478999999999
Q ss_pred CeEEEecChhhHHH
Q 001400 384 GQIVYQGPRVSVLD 397 (1085)
Q Consensus 384 G~iv~~G~~~~~~~ 397 (1085)
|+|++.|+++++++
T Consensus 228 G~iv~~G~~~eLl~ 241 (255)
T d2hyda1 228 GHIVETGTHRELIA 241 (255)
T ss_dssp TEEEEEECHHHHHH
T ss_pred CEEEEECCHHHHHh
Confidence 99999999999875
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=1.9e-42 Score=369.55 Aligned_cols=199 Identities=26% Similarity=0.406 Sum_probs=163.0
Q ss_pred CeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCCh---hcccceEEEEccCCCCCCCC
Q 001400 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFARISGYCEQNDIHSPGL 917 (1085)
Q Consensus 841 ~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gy~~Q~~~~~~~~ 917 (1085)
.+.+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.+||.++.. ..+++.+|||+|++.+++.
T Consensus 14 ~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~--p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~- 90 (242)
T d1mv5a_ 14 SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQ--PTAGEITIDGQPIDNISLENWRSQIGFVSQDSAIMAG- 90 (242)
T ss_dssp SSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSC--CSBSCEEETTEESTTTSCSCCTTTCCEECCSSCCCCE-
T ss_pred CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHHhhC--CCCCEEEECCEEeccccHHHHHhheEEEccccccCCc-
Confidence 3468999999999999999999999999999999999876 568999999998754 4567889999999998876
Q ss_pred CHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcc-------cccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEE
Q 001400 918 TVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSL-------SGALIGLPGINGLSTEQRKRLTIAVELVANPSIV 990 (1085)
Q Consensus 918 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~il 990 (1085)
|++||+.++... .... ..++++++..++... .+..++.. +.+|||||||||+|||||+++|+||
T Consensus 91 ti~eNi~~~~~~----~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-g~~LSGGqkQRv~iARal~~~p~il 161 (242)
T d1mv5a_ 91 TIRENLTYGLEG----DYTD----EDLWQVLDLAFARSFVENMPDQLNTEVGER-GVKISGGQRQRLAIARAFLRNPKIL 161 (242)
T ss_dssp EHHHHTTSCTTS----CSCH----HHHHHHHHHHTCTTTTTSSTTGGGCEESTT-SBCCCHHHHHHHHHHHHHHHCCSEE
T ss_pred chhhheeccccc----ccch----hhHHHHHHHHHhhhhhccCcccccccccCC-CCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 999999765321 1111 223455555554332 22233332 3469999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCC
Q 001400 991 FMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1085)
Q Consensus 991 llDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~ 1055 (1085)
|||||||+||+.++..|++.|+++. +|+|||+|||+++ ..+.||+|++|+ +|++++.|+..
T Consensus 162 ilDEpts~LD~~~~~~i~~~l~~l~-~~~Tvi~itH~l~--~~~~~D~i~vl~-~G~iv~~G~~~ 222 (242)
T d1mv5a_ 162 MLDEATASLDSESESMVQKALDSLM-KGRTTLVIAHRLS--TIVDADKIYFIE-KGQITGSGKHN 222 (242)
T ss_dssp EEECCSCSSCSSSCCHHHHHHHHHH-TTSEEEEECCSHH--HHHHCSEEEEEE-TTEECCCSCHH
T ss_pred EecCCccccCHHHHHHHHHHHHHHc-CCCEEEEEECCHH--HHHhCCEEEEEE-CCEEEEECCHH
Confidence 9999999999999999999999986 5999999999975 456799999998 57999999864
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=7.6e-42 Score=367.28 Aligned_cols=210 Identities=23% Similarity=0.369 Sum_probs=167.8
Q ss_pred ceeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCC---CceEEEEccCCCCCCC
Q 001400 147 KLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP---PRTSAYVSQQDWQVAE 223 (1085)
Q Consensus 147 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~ 223 (1085)
+.++|+|||+.|++||+++|+||||||||||+++|+|++.|. +|+|.+||.++.+... ++.++||+|++.++.
T Consensus 27 ~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~- 102 (253)
T d3b60a1 27 EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDID---EGHILMDGHDLREYTLASLRNQVALVSQNVHLFN- 102 (253)
T ss_dssp SCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCS---EEEEEETTEETTTBCHHHHHHTEEEECSSCCCCS-
T ss_pred CCceeeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccCCC---ccEEEECCcccchhhhhhhhheEEEEeeccccCC-
Confidence 357999999999999999999999999999999999999886 9999999999877653 467999999998665
Q ss_pred CCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCcc
Q 001400 224 MTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEM 303 (1085)
Q Consensus 224 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 303 (1085)
.|+++|+.|+.... ...+.+.+++ +..+ ..+.++ .|++..||.+|+.
T Consensus 103 ~ti~~n~~~~~~~~---~~~~~i~~a~---~~~~------------------------l~~~i~--~l~~gl~t~~~~~- 149 (253)
T d3b60a1 103 DTVANNIAYARTEE---YSREQIEEAA---RMAY------------------------AMDFIN--KMDNGLDTIIGEN- 149 (253)
T ss_dssp SBHHHHHHTTTTSC---CCHHHHHHHH---HTTT------------------------CHHHHH--HSTTGGGSBCCTT-
T ss_pred cchhhhhhhcCccc---CCHHHHHHHH---HHHh------------------------HHHHHH--hccccchhhhcCC-
Confidence 59999998863111 0011111110 0000 111111 2566778999864
Q ss_pred cccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEecC
Q 001400 304 LKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSE 383 (1085)
Q Consensus 304 ~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~~ 383 (1085)
..+|||||||||+|||||+.+|+||+||||||+||+.++..|++.|+++.+ ++ |++.++|....+ ..||+|++|++
T Consensus 150 ~~~LSGGqkQRvaiARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~--~~-Tvi~itH~l~~~-~~~D~v~vl~~ 225 (253)
T d3b60a1 150 GVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK--NR-TSLVIAHRLSTI-EQADEIVVVED 225 (253)
T ss_dssp SCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT--TS-EEEEECSCGGGT-TTCSEEEEEET
T ss_pred CCCcCHHHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHHHHHhcc--CC-EEEEEECCHHHH-HhCCEEEEEEC
Confidence 568999999999999999999999999999999999999999999999864 44 555577887655 68999999999
Q ss_pred CeEEEecChhhHHH
Q 001400 384 GQIVYQGPRVSVLD 397 (1085)
Q Consensus 384 G~iv~~G~~~~~~~ 397 (1085)
|+|+++|+++++++
T Consensus 226 G~Iv~~G~~~eLl~ 239 (253)
T d3b60a1 226 GIIVERGTHSELLA 239 (253)
T ss_dssp TEEEEEECHHHHHH
T ss_pred CEEEEECCHHHHHh
Confidence 99999999999875
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=5.4e-42 Score=368.06 Aligned_cols=221 Identities=22% Similarity=0.310 Sum_probs=170.2
Q ss_pred eeeeccceeeeeccccccccccccCCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccC
Q 001400 816 SMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPK 895 (1085)
Q Consensus 816 ~~~~~~~~y~v~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 895 (1085)
.+.++|++|.++. ..+..+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.+||+++
T Consensus 11 ~I~~~nvsf~Y~~----------~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~--p~~G~I~i~g~~i 78 (251)
T d1jj7a_ 11 LVQFQDVSFAYPN----------RPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQ--PTGGQLLLDGKPL 78 (251)
T ss_dssp CEEEEEEEECCTT----------STTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEEG
T ss_pred eEEEEEEEEECCC----------CCCCEeEeceEEEEcCCCEEEEECCCCCcHHHHHHHHhcccC--CCcCEEEECCEec
Confidence 4777787776631 123568999999999999999999999999999999999877 5699999999986
Q ss_pred Ch---hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCc-ccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCH
Q 001400 896 RQ---ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSE-IELETQRAFVEEVMELVELTSLSGALIGLPGINGLST 971 (1085)
Q Consensus 896 ~~---~~~~~~~gy~~Q~~~~~~~~tv~e~l~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~ 971 (1085)
.. ..+++.++||+|++.+++ .||+||+.|+........ ...........+.++ .+..-.+..++. .+.+|||
T Consensus 79 ~~~~~~~~r~~i~~v~Q~~~lf~-~tv~eni~~g~~~~~~~~~~~~~~~~~~~~~~i~--~l~~g~~~~i~~-~~~~LSG 154 (251)
T d1jj7a_ 79 PQYEHRYLHRQVAAVGQEPQVFG-RSLQENIAYGLTQKPTMEEITAAAVKSGAHSFIS--GLPQGYDTEVDE-AGSQLSG 154 (251)
T ss_dssp GGBCHHHHHHHEEEECSSCCCCS-SBHHHHHHCSCSSCCCHHHHHHHHHHHTCHHHHH--TSTTGGGCBCCS-SCSSSCH
T ss_pred chhhhHHHHHHhhhccccccccC-cchhhhhhhhhcccchHHHHHHHHHHHHHHHHHH--hccccchhhHhc-cCccCCh
Confidence 53 456788999999998875 599999988632211000 000011111122222 222223333332 2357999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CceEEEEecCccHHHHHhcCEEEEEecCcEEEE
Q 001400 972 EQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIY 1050 (1085)
Q Consensus 972 Gqrqrl~iA~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~ 1050 (1085)
||||||+|||||+++|+|||||||||+||+.++..|++.|+++.++ |+|||+||||++ ..+.||+|++|++ |++++
T Consensus 155 GqkQRvaiARal~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l~--~~~~aDrI~vl~~-G~iv~ 231 (251)
T d1jj7a_ 155 GQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLS--LVEQADHILFLEG-GAIRE 231 (251)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCHH--HHHTCSEEEEEET-TEEEE
T ss_pred hHceEEEEeeccccCCcEEEecCcCcccChhhHHHHHHHHHHHhhhcCCEEEEEeCCHH--HHHhCCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999999999999999998654 899999999975 5578999999985 79999
Q ss_pred ecCCC
Q 001400 1051 AGPLG 1055 (1085)
Q Consensus 1051 ~g~~~ 1055 (1085)
.|+..
T Consensus 232 ~Gt~~ 236 (251)
T d1jj7a_ 232 GGTHQ 236 (251)
T ss_dssp EECHH
T ss_pred ECCHH
Confidence 99864
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=1.2e-41 Score=364.80 Aligned_cols=212 Identities=24% Similarity=0.399 Sum_probs=173.4
Q ss_pred eeeeccceeeeeccccccccccccCCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccC
Q 001400 816 SMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPK 895 (1085)
Q Consensus 816 ~~~~~~~~y~v~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 895 (1085)
.+.++|++|.++ .....+|+||||+|++||++||+|+||||||||+++|+|... +.+|+|.++|.++
T Consensus 16 ~I~~~nvsf~Y~-----------~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~--p~~G~I~i~g~~i 82 (255)
T d2hyda1 16 RIDIDHVSFQYN-----------DNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYD--VTSGQILIDGHNI 82 (255)
T ss_dssp CEEEEEEEECSC-----------SSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSC--CSEEEEEETTEEG
T ss_pred EEEEEEEEEEeC-----------CCCCcceeceEEEEcCCCEEEEECCCCCcHHHHHHHHHhcCC--ccccccccCCEEc
Confidence 577788877653 133568999999999999999999999999999999999877 5699999999986
Q ss_pred Ch---hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCccc-------ccccCCCC
Q 001400 896 RQ---ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLS-------GALIGLPG 965 (1085)
Q Consensus 896 ~~---~~~~~~~gy~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~ 965 (1085)
+. ..+++.+|||+|++.+++ .||+||+.|+. + ... ++.++++++..++.+.. +..++. .
T Consensus 83 ~~~~~~~lr~~i~~v~Q~~~lf~-~Ti~eNi~~g~----~-~~~----~~~~~~al~~~~l~~~i~~lp~gl~t~i~~-~ 151 (255)
T d2hyda1 83 KDFLTGSLRNQIGLVQQDNILFS-DTVKENILLGR----P-TAT----DEEVVEAAKMANAHDFIMNLPQGYDTEVGE-R 151 (255)
T ss_dssp GGSCHHHHHHTEEEECSSCCCCS-SBHHHHHGGGC----S-SCC----HHHHHHHHHHTTCHHHHHTSTTGGGCBCCG-G
T ss_pred ccCCHHHhhheeeeeeccccCCC-CCHHHHHhccC----c-CCC----HHHHHHHHHHhCCHHHHHhccccccchhcC-C
Confidence 53 457788999999998875 59999998762 1 111 12356677777764422 223332 2
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEecC
Q 001400 966 INGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 1045 (1085)
Q Consensus 966 ~~~LS~Gqrqrl~iA~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~g 1045 (1085)
+.+||||||||++|||||+++|+||+||||||+||+.++..|++.|+++. +++|||+|||+++ ....||+|++|+ +
T Consensus 152 g~~LSgGq~QRi~iARal~~~p~ililDEpts~LD~~t~~~i~~~l~~l~-~~~TvI~itH~~~--~~~~~D~ii~l~-~ 227 (255)
T d2hyda1 152 GVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLS-KDRTTLIVAHRLS--TITHADKIVVIE-N 227 (255)
T ss_dssp GTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSSGG--GTTTCSEEEEEE-T
T ss_pred CCCcCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCHH--HHHhCCEEEEEE-C
Confidence 34799999999999999999999999999999999999999999999975 5899999999986 457899999998 5
Q ss_pred cEEEEecCCC
Q 001400 1046 GELIYAGPLG 1055 (1085)
Q Consensus 1046 G~~~~~g~~~ 1055 (1085)
|++++.|+..
T Consensus 228 G~iv~~G~~~ 237 (255)
T d2hyda1 228 GHIVETGTHR 237 (255)
T ss_dssp TEEEEEECHH
T ss_pred CEEEEECCHH
Confidence 8999999864
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=5.9e-41 Score=360.35 Aligned_cols=213 Identities=25% Similarity=0.342 Sum_probs=171.3
Q ss_pred eeeeccceeeeeccccccccccccCCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccC
Q 001400 816 SMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPK 895 (1085)
Q Consensus 816 ~~~~~~~~y~v~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 895 (1085)
.+.++|++|.++ .....+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.++|.++
T Consensus 13 ~I~~~nvsf~Y~-----------~~~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~--p~~G~I~i~g~~i 79 (253)
T d3b60a1 13 DLEFRNVTFTYP-----------GREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYD--IDEGHILMDGHDL 79 (253)
T ss_dssp CEEEEEEEECSS-----------SSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTC--CSEEEEEETTEET
T ss_pred EEEEEEEEEEeC-----------CCCCceeeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccC--CCccEEEECCccc
Confidence 467777777653 123568999999999999999999999999999999999876 5689999999986
Q ss_pred Ch---hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcc-------cccccCCCC
Q 001400 896 RQ---ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSL-------SGALIGLPG 965 (1085)
Q Consensus 896 ~~---~~~~~~~gy~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~~~~~ 965 (1085)
.. ..+++.++||+|++.++. .|+++|+.++.. ..... +.++++++..++.+. .+..++. .
T Consensus 80 ~~~~~~~~r~~i~~v~Q~~~l~~-~ti~~n~~~~~~----~~~~~----~~i~~a~~~~~l~~~i~~l~~gl~t~~~~-~ 149 (253)
T d3b60a1 80 REYTLASLRNQVALVSQNVHLFN-DTVANNIAYART----EEYSR----EQIEEAARMAYAMDFINKMDNGLDTIIGE-N 149 (253)
T ss_dssp TTBCHHHHHHTEEEECSSCCCCS-SBHHHHHHTTTT----SCCCH----HHHHHHHHTTTCHHHHHHSTTGGGSBCCT-T
T ss_pred chhhhhhhhheEEEEeeccccCC-cchhhhhhhcCc----ccCCH----HHHHHHHHHHhHHHHHHhccccchhhhcC-C
Confidence 53 456778999999998875 599999987521 11121 234555555554332 2233332 2
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEecC
Q 001400 966 INGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 1045 (1085)
Q Consensus 966 ~~~LS~Gqrqrl~iA~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~g 1045 (1085)
+.+|||||||||+|||||+++|+||+||||||+||+.++..|++.|+++. +++|||+||||++ ..+.||+|++|++
T Consensus 150 ~~~LSGGqkQRvaiARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~-~~~Tvi~itH~l~--~~~~~D~v~vl~~- 225 (253)
T d3b60a1 150 GVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQ-KNRTSLVIAHRLS--TIEQADEIVVVED- 225 (253)
T ss_dssp SCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHH-TTSEEEEECSCGG--GTTTCSEEEEEET-
T ss_pred CCCcCHHHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHHHHHhc-cCCEEEEEECCHH--HHHhCCEEEEEEC-
Confidence 45799999999999999999999999999999999999999999999986 5899999999986 4477999999985
Q ss_pred cEEEEecCCC
Q 001400 1046 GELIYAGPLG 1055 (1085)
Q Consensus 1046 G~~~~~g~~~ 1055 (1085)
|++++.|+..
T Consensus 226 G~Iv~~G~~~ 235 (253)
T d3b60a1 226 GIIVERGTHS 235 (253)
T ss_dssp TEEEEEECHH
T ss_pred CEEEEECCHH
Confidence 7999999864
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=4.8e-39 Score=350.74 Aligned_cols=198 Identities=21% Similarity=0.327 Sum_probs=157.1
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCCCceEEEEccCCCCCCCCCHH
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVR 227 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 227 (1085)
.+||+|||+.|++||+++|+|||||||||||++|+|+++|. +|+|.++| .++||+|++++++. ||+
T Consensus 49 ~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~---~G~I~~~g----------~i~~v~Q~~~l~~~-tv~ 114 (281)
T d1r0wa_ 49 NPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEAS---EGIIKHSG----------RVSFCSQFSWIMPG-TIK 114 (281)
T ss_dssp CEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCS---EEEEECCS----------CEEEECSSCCCCSE-EHH
T ss_pred CeEEeCeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCcCC---CcEEEECC----------EEEEEeccccccCc-eee
Confidence 46999999999999999999999999999999999999886 99999998 48999999998774 999
Q ss_pred HHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCcccccC
Q 001400 228 ETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGI 307 (1085)
Q Consensus 228 E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 307 (1085)
||+.|+.... ..++. +.. +. .+.......+....+|.+|+. ..+|
T Consensus 115 eni~~~~~~~--~~~~~---~~~------------------~~-----------~~~~~~i~~l~~~~~~~~~~~-~~~L 159 (281)
T d1r0wa_ 115 ENIIFGVSYD--EYRYK---SVV------------------KA-----------CQLQQDITKFAEQDNTVLGEG-GVTL 159 (281)
T ss_dssp HHHTTTSCCC--HHHHH---HHH------------------HH-----------TTCHHHHTTSTTGGGCEECTT-CTTS
T ss_pred cccccccccc--chHHH---HHH------------------HH-----------HHhHHHHHhchhhhhhhhhhh-ccCC
Confidence 9998864211 00000 000 00 011122445677778888754 4579
Q ss_pred chhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEecCCeEE
Q 001400 308 SGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIV 387 (1085)
Q Consensus 308 SGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~~G~iv 387 (1085)
||||||||+|||||+.+|+||+|||||+|||+.+..+|++.+..... .++| +|.++|+.+ ....||+|++|++|+++
T Consensus 160 SgGqkQRv~lARaL~~~p~illLDEPts~LD~~~~~~i~~~~~~~~~-~~~t-vi~itH~~~-~l~~aDrI~vl~~G~i~ 236 (281)
T d1r0wa_ 160 SGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLM-ANKT-RILVTSKME-HLRKADKILILHQGSSY 236 (281)
T ss_dssp CHHHHHHHHHHHHHHSCCSEEEEESCCCSSCHHHHHHHHHHCCCCCT-TTSE-EEEECSCHH-HHHTCSEEEEEETTEEE
T ss_pred CHHHHHHHHHHHHHHhCccchhhcCccccCCHHHHHHHHHHHHHHhh-CCCE-EEEEechHH-HHHhCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999986433222 2344 555777765 45789999999999999
Q ss_pred EecChhhHHH
Q 001400 388 YQGPRVSVLD 397 (1085)
Q Consensus 388 ~~G~~~~~~~ 397 (1085)
++|+++++..
T Consensus 237 ~~Gt~~eL~~ 246 (281)
T d1r0wa_ 237 FYGTFSELQS 246 (281)
T ss_dssp EEECHHHHHH
T ss_pred EECCHHHHhc
Confidence 9999999864
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=9.2e-39 Score=339.51 Aligned_cols=204 Identities=23% Similarity=0.368 Sum_probs=171.1
Q ss_pred EeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCCh---hcccceEEEEccCCCCCCCCCHH
Q 001400 844 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFARISGYCEQNDIHSPGLTVL 920 (1085)
Q Consensus 844 ~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gy~~Q~~~~~~~~tv~ 920 (1085)
.|+||||+|++||++||+||||||||||+++|+|..+ .+|+|.++|+++.. ...+...+|++|+.......++.
T Consensus 14 ~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~~---~~G~I~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 90 (231)
T d1l7vc_ 14 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS---GKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVW 90 (231)
T ss_dssp TSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSCC---CSSEEEESSSBGGGSCHHHHHHHEEEECSCCCCCSSCBHH
T ss_pred eecCEEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CceEEEECCEECCcCCHHHHHhhceeeeccccCCccccHH
Confidence 5889999999999999999999999999999999753 47999999997643 33455689999988777778999
Q ss_pred HHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhc-------CCCEEEEe
Q 001400 921 ESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVA-------NPSIVFMD 993 (1085)
Q Consensus 921 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~-------~p~illlD 993 (1085)
+++.+.... ....+.++++++.+++.+..+... ..||||||||++|||||++ +|+|||||
T Consensus 91 ~~~~~~~~~--------~~~~~~~~~~~~~~~l~~~~~~~~-----~~LSgG~~Qrv~iA~al~~~~p~~~p~p~llllD 157 (231)
T d1l7vc_ 91 HYLTLHQHD--------KTRTELLNDVAGALALDDKLGRST-----NQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLD 157 (231)
T ss_dssp HHHHHHCSC--------TTCHHHHHHHHHHTTCTTTTTSBG-----GGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEES
T ss_pred HHhhhccch--------hhHHHHHHHHHHhcCCHhHhCcCh-----hhcCHHHHHHHHHHHHHHhhCcccCCCCCEEEEc
Confidence 998765321 112345788999999988777654 4799999999999999997 67999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCCC--chHHHHHHH
Q 001400 994 EPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGS--KSCELIKYF 1065 (1085)
Q Consensus 994 EPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~~--~~~~~~~~~ 1065 (1085)
|||+|||+.++..++++|++++++|.|||++|||++ ++.+.|||+++|+ +|++++.|+..+ ...++.+.|
T Consensus 158 EPt~gLD~~~~~~i~~~i~~l~~~g~tii~vtHdl~-~~~~~~dri~vl~-~G~iv~~G~~~ev~~~~~l~~~y 229 (231)
T d1l7vc_ 158 EPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDLN-HTLRHAHRAWLLK-GGKMLASGRREEVLTPPNLAQAY 229 (231)
T ss_dssp SCSTTCCHHHHHHHHHHHHHHHHTTCEEEECCCCHH-HHHHHCSBCCBEE-TTEECCCSBHHHHSCHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHHCCEEEEEE-CCEEEEECCHHHHhCChHHHHhh
Confidence 999999999999999999999989999999999987 5889999999998 579999998654 233444444
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=4.9e-38 Score=342.70 Aligned_cols=189 Identities=22% Similarity=0.345 Sum_probs=151.8
Q ss_pred CeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCChhcccceEEEEccCCCCCCCCCHH
Q 001400 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVL 920 (1085)
Q Consensus 841 ~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gy~~Q~~~~~~~~tv~ 920 (1085)
+.++|+||||+|++||++||+||||||||||+++|+|... +.+|.|.++|. ++|++|++.+++. ||+
T Consensus 48 g~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~--p~~G~I~~~g~----------i~~v~Q~~~l~~~-tv~ 114 (281)
T d1r0wa_ 48 GNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELE--ASEGIIKHSGR----------VSFCSQFSWIMPG-TIK 114 (281)
T ss_dssp TCEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSC--CSEEEEECCSC----------EEEECSSCCCCSE-EHH
T ss_pred CCeEEeCeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCc--CCCcEEEECCE----------EEEEeccccccCc-eee
Confidence 4579999999999999999999999999999999999877 56999999983 7999999988875 999
Q ss_pred HHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCC-------CcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q 001400 921 ESLLFSAWLRLPSEIELETQRAFVEEVMELVEL-------TSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMD 993 (1085)
Q Consensus 921 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-------~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlD 993 (1085)
||+.|+... ... ..+++++.+++ .+..+..++.. +.+|||||||||+|||||+++|+|||||
T Consensus 115 eni~~~~~~------~~~----~~~~~~~~~~~~~~i~~l~~~~~~~~~~~-~~~LSgGqkQRv~lARaL~~~p~illLD 183 (281)
T d1r0wa_ 115 ENIIFGVSY------DEY----RYKSVVKACQLQQDITKFAEQDNTVLGEG-GVTLSGGQRARISLARAVYKDADLYLLD 183 (281)
T ss_dssp HHHTTTSCC------CHH----HHHHHHHHTTCHHHHTTSTTGGGCEECTT-CTTSCHHHHHHHHHHHHHHSCCSEEEEE
T ss_pred ccccccccc------cch----HHHHHHHHHHhHHHHHhchhhhhhhhhhh-ccCCCHHHHHHHHHHHHHHhCccchhhc
Confidence 999876321 111 12333333333 22333333322 3579999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCCC
Q 001400 994 EPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGS 1056 (1085)
Q Consensus 994 EPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~~ 1056 (1085)
||||+||+.++..+++.+......++|+|++||+++ ..+.||||++|++ |++++.|+..+
T Consensus 184 EPts~LD~~~~~~i~~~~~~~~~~~~tvi~itH~~~--~l~~aDrI~vl~~-G~i~~~Gt~~e 243 (281)
T d1r0wa_ 184 SPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKME--HLRKADKILILHQ-GSSYFYGTFSE 243 (281)
T ss_dssp SCCCSSCHHHHHHHHHHCCCCCTTTSEEEEECSCHH--HHHTCSEEEEEET-TEEEEEECHHH
T ss_pred CccccCCHHHHHHHHHHHHHHhhCCCEEEEEechHH--HHHhCCEEEEEEC-CEEEEECCHHH
Confidence 999999999999998764443456899999999974 5678999999985 79999998654
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.9e-37 Score=329.34 Aligned_cols=198 Identities=25% Similarity=0.359 Sum_probs=167.9
Q ss_pred eecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCCC---ceEEEEccCCCCCCCCC
Q 001400 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPP---RTSAYVSQQDWQVAEMT 225 (1085)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~~---~~~~yv~Q~d~~~~~lT 225 (1085)
++|+|||+.|++||+++|+||||||||||+++|+|+. +. +|+|.++|.++...... ...+|++|+.......+
T Consensus 13 ~~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~-~~---~G~I~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (231)
T d1l7vc_ 13 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SG---KGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATP 88 (231)
T ss_dssp TTSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC-CC---SSEEEESSSBGGGSCHHHHHHHEEEECSCCCCCSSCB
T ss_pred ceecCEEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-CC---ceEEEECCEECCcCCHHHHHhhceeeeccccCCcccc
Confidence 3699999999999999999999999999999999965 33 89999999987654432 35799999977667789
Q ss_pred HHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCcccc
Q 001400 226 VRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLK 305 (1085)
Q Consensus 226 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 305 (1085)
+.+++.+...-+ .....++++++.++|.+..+..+ +
T Consensus 89 v~~~~~~~~~~~---------------------------------------~~~~~~~~~~~~~~l~~~~~~~~-----~ 124 (231)
T d1l7vc_ 89 VWHYLTLHQHDK---------------------------------------TRTELLNDVAGALALDDKLGRST-----N 124 (231)
T ss_dssp HHHHHHHHCSCT---------------------------------------TCHHHHHHHHHHTTCTTTTTSBG-----G
T ss_pred HHHHhhhccchh---------------------------------------hHHHHHHHHHHhcCCHhHhCcCh-----h
Confidence 999987643210 11234778889999988777655 4
Q ss_pred cCchhhhhHHHHHHHHhC-------CCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeE
Q 001400 306 GISGGQKKRLTTGELLVG-------PARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDV 378 (1085)
Q Consensus 306 ~LSGGqkqRvsia~al~~-------~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i 378 (1085)
.|||||||||+|||+|+. +|++|+|||||+|||+.++..+.+.+++++.. +++|+.++|+.+++.++||||
T Consensus 125 ~LSgG~~Qrv~iA~al~~~~p~~~p~p~llllDEPt~gLD~~~~~~i~~~i~~l~~~--g~tii~vtHdl~~~~~~~dri 202 (231)
T d1l7vc_ 125 QLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQQ--GLAIVMSSHDLNHTLRHAHRA 202 (231)
T ss_dssp GCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSCSTTCCHHHHHHHHHHHHHHHHT--TCEEEECCCCHHHHHHHCSBC
T ss_pred hcCHHHHHHHHHHHHHHhhCcccCCCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhC--CCEEEEEeCCHHHHHHHCCEE
Confidence 699999999999999986 67999999999999999999999999999763 556667889999999999999
Q ss_pred EEecCCeEEEecChhhHH
Q 001400 379 ILLSEGQIVYQGPRVSVL 396 (1085)
Q Consensus 379 i~L~~G~iv~~G~~~~~~ 396 (1085)
++|++|++++.|+++++.
T Consensus 203 ~vl~~G~iv~~G~~~ev~ 220 (231)
T d1l7vc_ 203 WLLKGGKMLASGRREEVL 220 (231)
T ss_dssp CBEETTEECCCSBHHHHS
T ss_pred EEEECCEEEEECCHHHHh
Confidence 999999999999998874
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=7e-37 Score=317.96 Aligned_cols=191 Identities=21% Similarity=0.283 Sum_probs=154.7
Q ss_pred cccccccCCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCChhcccceEEEEccCCC
Q 001400 833 KQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDI 912 (1085)
Q Consensus 833 ~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gy~~Q~~~ 912 (1085)
+++++.|+ +++|+||||+|++||++||+||||||||||+++|+|..+ +.+|+|.++|.++.. .+..++|++|+..
T Consensus 6 ~~ls~~y~-~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~--p~~G~I~~~g~~i~~--~~~~i~~~~~~~~ 80 (200)
T d1sgwa_ 6 RDLSVGYD-KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK--PLKGEIIYNGVPITK--VKGKIFFLPEEII 80 (200)
T ss_dssp EEEEEESS-SEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEEGGG--GGGGEEEECSSCC
T ss_pred EEEEEEeC-CeEEeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccc--cCCCEEEECCEehhH--hcCcEEEEeeccc
Confidence 33444444 369999999999999999999999999999999999877 579999999998753 4567999999999
Q ss_pred CCCCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q 001400 913 HSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFM 992 (1085)
Q Consensus 913 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illl 992 (1085)
++..+|+.|++.+.+.++... ... ..+.+.++.+++.++... +.+||||||||++|||||+.+|+|+||
T Consensus 81 ~~~~~t~~~~l~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~------~~~LSgG~~qrv~ia~al~~~~~llll 149 (200)
T d1sgwa_ 81 VPRKISVEDYLKAVASLYGVK-VNK----NEIMDALESVEVLDLKKK------LGELSQGTIRRVQLASTLLVNAEIYVL 149 (200)
T ss_dssp CCTTSBHHHHHHHHHHHTTCC-CCH----HHHHHHHHHTTCCCTTSB------GGGSCHHHHHHHHHHHHTTSCCSEEEE
T ss_pred CCCCcCHHHHHHHHHHhcCCc-cCH----HHHHHHHHHcCCcccccc------cCcCCCcHHHHHHHHHHHhcCCCEEEE
Confidence 989999999998876665332 221 235677888887665433 247999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHC-CceEEEEecCccHHHHHhcCEEEEEec
Q 001400 993 DEPTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKR 1044 (1085)
Q Consensus 993 DEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~il~l~~ 1044 (1085)
||||+|||+.++..+++.|+++.++ |.+||+++|++ ..||++.+|.+
T Consensus 150 DEPt~gLD~~~~~~i~~~l~~~~~~~~~~ii~~~~~l-----~~~D~~~~l~~ 197 (200)
T d1sgwa_ 150 DDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREEL-----SYCDVNENLHK 197 (200)
T ss_dssp ESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCC-----TTSSEEEEGGG
T ss_pred cCcccccCHHHHHHHHHHHHHHHhCCCEEEEEEechh-----hhcchhhheee
Confidence 9999999999999999999998765 44455554543 36899988864
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=1.1e-35 Score=308.83 Aligned_cols=183 Identities=18% Similarity=0.245 Sum_probs=152.1
Q ss_pred eecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCCCceEEEEccCCCCCCCCCHHH
Q 001400 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRE 228 (1085)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E 228 (1085)
+||+|||++|++|++++|+||||||||||+++|+|.++|. +|+|.+||+++.+ .+..++|++|+..++..+|++|
T Consensus 15 ~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~---~G~I~~~g~~i~~--~~~~i~~~~~~~~~~~~~t~~~ 89 (200)
T d1sgwa_ 15 PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPL---KGEIIYNGVPITK--VKGKIFFLPEEIIVPRKISVED 89 (200)
T ss_dssp EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEEGGG--GGGGEEEECSSCCCCTTSBHHH
T ss_pred eEEeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccccC---CCEEEECCEehhH--hcCcEEEEeecccCCCCcCHHH
Confidence 5999999999999999999999999999999999999887 9999999998864 3467999999999889999999
Q ss_pred HHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCcccccCc
Q 001400 229 TLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGIS 308 (1085)
Q Consensus 229 ~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LS 308 (1085)
++.+.+...+.... +..+.+.++.+++.+. +..+ ..||
T Consensus 90 ~l~~~~~~~~~~~~------------------------------------~~~~~~~l~~~~~~~~-~~~~-----~~LS 127 (200)
T d1sgwa_ 90 YLKAVASLYGVKVN------------------------------------KNEIMDALESVEVLDL-KKKL-----GELS 127 (200)
T ss_dssp HHHHHHHHTTCCCC------------------------------------HHHHHHHHHHTTCCCT-TSBG-----GGSC
T ss_pred HHHHHHHhcCCccC------------------------------------HHHHHHHHHHcCCccc-cccc-----CcCC
Confidence 99887655432110 1124456677776543 2333 4699
Q ss_pred hhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEecC
Q 001400 309 GGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSE 383 (1085)
Q Consensus 309 GGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~~ 383 (1085)
|||||||+|||||+.+|++++|||||+|||+.++..+++.++++.+. ++++|++.+|+. ++||.+.+|++
T Consensus 128 gG~~qrv~ia~al~~~~~llllDEPt~gLD~~~~~~i~~~l~~~~~~-~~~~ii~~~~~l----~~~D~~~~l~~ 197 (200)
T d1sgwa_ 128 QGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKE-KGIVIISSREEL----SYCDVNENLHK 197 (200)
T ss_dssp HHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHH-HSEEEEEESSCC----TTSSEEEEGGG
T ss_pred CcHHHHHHHHHHHhcCCCEEEEcCcccccCHHHHHHHHHHHHHHHhC-CCEEEEEEechh----hhcchhhheee
Confidence 99999999999999999999999999999999999999999998765 466777666653 57999999864
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.36 E-value=3.9e-14 Score=142.88 Aligned_cols=157 Identities=15% Similarity=0.081 Sum_probs=95.9
Q ss_pred EEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCChhcccceEEEEccCCCCC----CCCCHHHHHHHhhhhcCC
Q 001400 857 LTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHS----PGLTVLESLLFSAWLRLP 932 (1085)
Q Consensus 857 ~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gy~~Q~~~~~----~~~tv~e~l~~~~~~~~~ 932 (1085)
+++|+||||||||||+++|+|... +..|.+.+.+.+...... +.++..+..... ...+..+...+ .+
T Consensus 2 ki~I~G~~G~GKSTLl~~i~~~l~--~~~g~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-- 72 (178)
T d1ye8a1 2 KIIITGEPGVGKTTLVKKIVERLG--KRAIGFWTEEVRDPETKK--RTGFRIITTEGKKKIFSSKFFTSKKLV---GS-- 72 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG--GGEEEEEEEEEC--------CCEEEEEETTCCEEEEEETTCCCSSEE---TT--
T ss_pred EEEEECCCCcHHHHHHHHHHhcCC--CCcceEEECCcchHHHHH--hhhhhhhhhhHHHHHHhhhhhhhhhhh---hh--
Confidence 589999999999999999999765 357888888765322211 112211100000 00000000000 00
Q ss_pred CcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 001400 933 SEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVR 1012 (1085)
Q Consensus 933 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~ 1012 (1085)
..... + ...+|+|++++.++++++..+|++|++|||+...+ ......+.+.
T Consensus 73 ~~~~~--------~-------------------~~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~~--~~~~~~~~l~ 123 (178)
T d1ye8a1 73 YGVNV--------Q-------------------YFEELAIPILERAYREAKKDRRKVIIIDEIGKMEL--FSKKFRDLVR 123 (178)
T ss_dssp EEECH--------H-------------------HHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGG--GCHHHHHHHH
T ss_pred hhcCc--------c-------------------hhhhhhhhhHHHHHHHHHhcCCCceeecCCCccch--hhHHHHHHHH
Confidence 00000 0 01378999999999999999999999999865443 2344555555
Q ss_pred HHHH-CCceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCC
Q 001400 1013 NIVN-TGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1085)
Q Consensus 1013 ~~~~-~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~ 1054 (1085)
++.+ .+.|||+++|+.+ ....+|++..+. +|+++.-++.
T Consensus 124 ~~l~~~~~~il~~~h~~~--~~~~~~~i~~~~-~~~i~~v~~~ 163 (178)
T d1ye8a1 124 QIMHDPNVNVVATIPIRD--VHPLVKEIRRLP-GAVLIELTPE 163 (178)
T ss_dssp HHHTCTTSEEEEECCSSC--CSHHHHHHHTCT-TCEEEECCTT
T ss_pred HHhccCCCEEEEEEccHH--HHHhhceEEEEe-CCEEEEECCc
Confidence 5544 4899999999965 345678888776 5788877654
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.36 E-value=3.2e-14 Score=143.48 Aligned_cols=82 Identities=11% Similarity=0.079 Sum_probs=60.4
Q ss_pred cCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEecCCe
Q 001400 306 GISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQ 385 (1085)
Q Consensus 306 ~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~~G~ 385 (1085)
.+|+|+++|.++++++..+|+++++|||.... .....+...+.+..+.. +++++.++|.. ....++|++..+.+|+
T Consensus 81 ~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~--~~~~~~~~~l~~~l~~~-~~~il~~~h~~-~~~~~~~~i~~~~~~~ 156 (178)
T d1ye8a1 81 EELAIPILERAYREAKKDRRKVIIIDEIGKME--LFSKKFRDLVRQIMHDP-NVNVVATIPIR-DVHPLVKEIRRLPGAV 156 (178)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCEEEECCCSTTG--GGCHHHHHHHHHHHTCT-TSEEEEECCSS-CCSHHHHHHHTCTTCE
T ss_pred hhhhhhhHHHHHHHHHhcCCCceeecCCCccc--hhhHHHHHHHHHHhccC-CCEEEEEEccH-HHHHhhceEEEEeCCE
Confidence 48999999999999999999999999985443 23345556666655443 34455455543 4567889999999999
Q ss_pred EEEecC
Q 001400 386 IVYQGP 391 (1085)
Q Consensus 386 iv~~G~ 391 (1085)
++.-++
T Consensus 157 i~~v~~ 162 (178)
T d1ye8a1 157 LIELTP 162 (178)
T ss_dssp EEECCT
T ss_pred EEEECC
Confidence 987553
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.78 E-value=8.5e-08 Score=104.35 Aligned_cols=72 Identities=19% Similarity=0.204 Sum_probs=61.0
Q ss_pred CCCCHHHHHHHHHHHHH----hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEE
Q 001400 967 NGLSTEQRKRLTIAVEL----VANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLF 1041 (1085)
Q Consensus 967 ~~LS~Gqrqrl~iA~aL----~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~ 1041 (1085)
..+|.|||+.+.++..+ ..+|+++++|||-++|+|.....+.+.|++.. .+.-||+|||.|. +.+.+|+++.
T Consensus 218 ~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~-~~~QviitTHsp~--~~~~~d~~~~ 293 (308)
T d1e69a_ 218 SLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENS-KHTQFIVITHNKI--VMEAADLLHG 293 (308)
T ss_dssp GGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT-TTSEEEEECCCTT--GGGGCSEEEE
T ss_pred hhhhHHHhhHHHHHhhhhhhhhccCchhhhhhccccCCHHHHHHHHHHHHHhc-cCCEEEEEECCHH--HHHhcccEEE
Confidence 46899999998877654 44678999999999999999999999999875 4678999999986 5678898855
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.56 E-value=7.6e-07 Score=96.54 Aligned_cols=77 Identities=23% Similarity=0.311 Sum_probs=60.5
Q ss_pred cccCchhhhhHHHHHHH----HhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEE
Q 001400 304 LKGISGGQKKRLTTGEL----LVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVI 379 (1085)
Q Consensus 304 ~~~LSGGqkqRvsia~a----l~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii 379 (1085)
...+|+|||+...++.. ...+++++++|||-++|++.....+.+.|++.++ ++-++.+ .|++++.+.+|+++
T Consensus 217 ~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~---~~Qviit-THsp~~~~~~d~~~ 292 (308)
T d1e69a_ 217 LSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSK---HTQFIVI-THNKIVMEAADLLH 292 (308)
T ss_dssp GGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTT---TSEEEEE-CCCTTGGGGCSEEE
T ss_pred hhhhhHHHhhHHHHHhhhhhhhhccCchhhhhhccccCCHHHHHHHHHHHHHhcc---CCEEEEE-ECCHHHHHhcccEE
Confidence 45699999999887754 3357789999999999999999999999998764 3445433 44578889999996
Q ss_pred E--ecCC
Q 001400 380 L--LSEG 384 (1085)
Q Consensus 380 ~--L~~G 384 (1085)
. +.+|
T Consensus 293 ~v~~~~g 299 (308)
T d1e69a_ 293 GVTMVNG 299 (308)
T ss_dssp EEEESSS
T ss_pred EEEEeCC
Confidence 6 4555
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.41 E-value=1.9e-07 Score=106.03 Aligned_cols=74 Identities=18% Similarity=0.226 Sum_probs=61.9
Q ss_pred CCCCHHHHHHHHHHHHH----hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEE
Q 001400 967 NGLSTEQRKRLTIAVEL----VANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFM 1042 (1085)
Q Consensus 967 ~~LS~Gqrqrl~iA~aL----~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l 1042 (1085)
..||||||.++++|..+ ..++++++||||+++||+.....+.+.|+++...+.-+|+|||+|. +++.+|+.+.+
T Consensus 331 ~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~~--~~~~ad~~~~V 408 (427)
T d1w1wa_ 331 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNT--MFEKSDALVGV 408 (427)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHH--HHTTCSEEEEE
T ss_pred hhhccchHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCCEEEEEeCCHH--HHHhcccEEEE
Confidence 35899999998877544 4567899999999999999999999999987655667999999974 78889997644
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.99 E-value=5.6e-06 Score=93.50 Aligned_cols=75 Identities=20% Similarity=0.355 Sum_probs=59.8
Q ss_pred cccCchhhhhHHHHHHHH----hCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEE
Q 001400 304 LKGISGGQKKRLTTGELL----VGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVI 379 (1085)
Q Consensus 304 ~~~LSGGqkqRvsia~al----~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii 379 (1085)
+..+|||||.++++|-.+ +.++++++||||+++||+.....+.+.|++++. ..+-+|+++|. +++.+.+|+++
T Consensus 330 ~~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~--~~~Q~I~iTH~-~~~~~~ad~~~ 406 (427)
T d1w1wa_ 330 MEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRN--PDLQFIVISLK-NTMFEKSDALV 406 (427)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCB--TTBEEEEECSC-HHHHTTCSEEE
T ss_pred hhhhccchHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhC--CCCEEEEEeCC-HHHHHhcccEE
Confidence 356899999998887433 467889999999999999999999999988743 34556656554 67899999987
Q ss_pred Ee
Q 001400 380 LL 381 (1085)
Q Consensus 380 ~L 381 (1085)
.+
T Consensus 407 ~V 408 (427)
T d1w1wa_ 407 GV 408 (427)
T ss_dssp EE
T ss_pred EE
Confidence 65
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=97.45 E-value=0.00068 Score=68.93 Aligned_cols=47 Identities=13% Similarity=0.158 Sum_probs=36.2
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHHCCceEEEEecCcc
Q 001400 983 LVANPSIVFMDEPTSGLDARAAAIVMR-TVRNIVNTGRTIVCTIHQPS 1029 (1085)
Q Consensus 983 L~~~p~illlDEPtsgLD~~~~~~i~~-~l~~~~~~g~tvi~~~H~~~ 1029 (1085)
.+.+.+++++||+..|=|+.....+.. +++.+.+.+..++++||..+
T Consensus 111 ~~~~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~tTH~~e 158 (224)
T d1ewqa2 111 EATENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYFE 158 (224)
T ss_dssp HCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCHH
T ss_pred cCCCCcEEeecccccCcchhhhcchHHHHHHHHhhcCcceEEeeechh
Confidence 345678999999999999977665554 45555666889999999854
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=97.41 E-value=0.00023 Score=72.58 Aligned_cols=60 Identities=12% Similarity=0.054 Sum_probs=36.0
Q ss_pred hhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHH-HHHHhccCCEEEEEEecChhHHHh
Q 001400 311 QKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYL-KHSTRALDGTTVISLLQPAPEAYE 373 (1085)
Q Consensus 311 qkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l-~~~~~~~~~t~ii~~~q~~~~~~~ 373 (1085)
|-+|++-.....++..++++||+.+|=|+.....+...+ ..+.+ .+..+++ .+|.. ++..
T Consensus 101 el~~~~~il~~~~~~sLvliDE~~~gT~~~eg~ala~aile~L~~-~~~~~i~-tTH~~-eL~~ 161 (224)
T d1ewqa2 101 EMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE-RRAYTLF-ATHYF-ELTA 161 (224)
T ss_dssp HHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH-HTCEEEE-ECCCH-HHHT
T ss_pred hHHHHHHHhccCCCCcEEeecccccCcchhhhcchHHHHHHHHhh-cCcceEE-eeech-hhhh
Confidence 334444443344666899999999999998877766543 33433 3455555 44443 4444
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.30 E-value=0.00041 Score=71.19 Aligned_cols=46 Identities=13% Similarity=0.146 Sum_probs=31.1
Q ss_pred HhCCCcEeEEeCCCCCCCHHHHHHHHHH-HHHHHhccCCEEEEEEecC
Q 001400 321 LVGPARVLFMDEISNGLDSSTTYQIIKY-LKHSTRALDGTTVISLLQP 367 (1085)
Q Consensus 321 l~~~p~vlllDEptsgLD~~~~~~i~~~-l~~~~~~~~~t~ii~~~q~ 367 (1085)
-..+..++++||+.+|=++.....+... +..+....+..+++ .+|.
T Consensus 117 ~~~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~-tTH~ 163 (234)
T d1wb9a2 117 NATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLF-ATHY 163 (234)
T ss_dssp HCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEE-ECSC
T ss_pred hcccccEEeecccccCCChhhhhHHHHHhhhhhhccccceEEE-ecch
Confidence 3455679999999999999999888654 55565433233444 4443
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.28 E-value=0.00017 Score=74.26 Aligned_cols=47 Identities=19% Similarity=0.176 Sum_probs=35.9
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHHC-CceEEEEecCcc
Q 001400 983 LVANPSIVFMDEPTSGLDARAAAIVMR-TVRNIVNT-GRTIVCTIHQPS 1029 (1085)
Q Consensus 983 L~~~p~illlDEPtsgLD~~~~~~i~~-~l~~~~~~-g~tvi~~~H~~~ 1029 (1085)
-+.+.+++++||+..|=++.....+.. .++.+..+ +..+|++||...
T Consensus 117 ~~~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~~ 165 (234)
T d1wb9a2 117 NATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFE 165 (234)
T ss_dssp HCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGG
T ss_pred hcccccEEeecccccCCChhhhhHHHHHhhhhhhccccceEEEecchHH
Confidence 355667999999999999988877655 46667554 567899999754
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=97.08 E-value=0.0038 Score=65.31 Aligned_cols=36 Identities=19% Similarity=0.160 Sum_probs=29.5
Q ss_pred eecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhh
Q 001400 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGR 184 (1085)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~ 184 (1085)
+-|+++.+=+.||++++|.|+||+|||||+.-|+-.
T Consensus 23 ~~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~~ 58 (277)
T d1cr2a_ 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQ 58 (277)
T ss_dssp TTHHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHHH
T ss_pred hhHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHh
Confidence 345555555899999999999999999998888743
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=96.89 E-value=0.0014 Score=68.88 Aligned_cols=27 Identities=30% Similarity=0.316 Sum_probs=23.8
Q ss_pred EEeCCeEEEEEccCCCChhHHHhhhhC
Q 001400 851 AFRPGVLTALVGVSGAGKTTLMDVLAG 877 (1085)
Q Consensus 851 ~i~~Ge~~al~G~nGaGKSTLl~~l~g 877 (1085)
-+++|+++.|.|++|+|||||+.-|+-
T Consensus 31 G~~~G~l~vi~G~~G~GKT~~~~~la~ 57 (277)
T d1cr2a_ 31 GARGGEVIMVTSGSGMGKSTFVRQQAL 57 (277)
T ss_dssp SBCTTCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 368999999999999999999877763
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=96.71 E-value=0.00045 Score=66.56 Aligned_cols=25 Identities=36% Similarity=0.303 Sum_probs=22.6
Q ss_pred EEEEeCCCCCChhHHHHHHHhhhCC
Q 001400 163 LTLLLGPPSSGKTTLLLALAGRLGH 187 (1085)
Q Consensus 163 ~~~llGp~GsGKSTLL~~L~G~l~~ 187 (1085)
+++|+|++|||||||++.|+..+..
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l~~ 28 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPALCA 28 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 6899999999999999999987654
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=96.71 E-value=0.0043 Score=63.31 Aligned_cols=29 Identities=24% Similarity=0.322 Sum_probs=25.9
Q ss_pred eeEeCCeEEEEeCCCCCChhHHHHHHHhh
Q 001400 156 GIIRPSRLTLLLGPPSSGKTTLLLALAGR 184 (1085)
Q Consensus 156 ~~i~~G~~~~llGp~GsGKSTLL~~L~G~ 184 (1085)
|=+++|+++.|.||||||||||+.-++-.
T Consensus 21 GGi~~gsl~li~G~pGsGKT~l~~qia~~ 49 (242)
T d1tf7a2 21 GGFFKDSIILATGATGTGKTLLVSRFVEN 49 (242)
T ss_dssp SSEESSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCcCCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 56999999999999999999999888754
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.67 E-value=0.00036 Score=70.60 Aligned_cols=34 Identities=21% Similarity=0.349 Sum_probs=24.4
Q ss_pred CCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEE
Q 001400 160 PSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKIT 196 (1085)
Q Consensus 160 ~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~ 196 (1085)
+|+.++++|+||+|||||+|+|.|...- ..|+|.
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~---~T~~vs 127 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLKL---RVSEVS 127 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCCC---C-----
T ss_pred cCCeEEEECCCCCCHHHHHHhhcchhhh---hccCcc
Confidence 4788999999999999999999876433 267665
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=96.64 E-value=0.00038 Score=67.48 Aligned_cols=27 Identities=44% Similarity=0.570 Sum_probs=24.5
Q ss_pred CCeEEEEeCCCCCChhHHHHHHHhhhC
Q 001400 160 PSRLTLLLGPPSSGKTTLLLALAGRLG 186 (1085)
Q Consensus 160 ~G~~~~llGp~GsGKSTLL~~L~G~l~ 186 (1085)
.|++++|.|||||||||+.+.|+..++
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~lg 29 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLPG 29 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCSS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999999997654
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=96.60 E-value=0.0005 Score=66.41 Aligned_cols=28 Identities=25% Similarity=0.417 Sum_probs=25.3
Q ss_pred eCCeEEEEeCCCCCChhHHHHHHHhhhC
Q 001400 159 RPSRLTLLLGPPSSGKTTLLLALAGRLG 186 (1085)
Q Consensus 159 ~~G~~~~llGp~GsGKSTLL~~L~G~l~ 186 (1085)
+.+.++.|+|||||||||+.+.|+..++
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l~ 31 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQLH 31 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4678999999999999999999998874
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.58 E-value=0.00049 Score=67.67 Aligned_cols=26 Identities=35% Similarity=0.635 Sum_probs=24.1
Q ss_pred CeEEEEeCCCCCChhHHHHHHHhhhC
Q 001400 161 SRLTLLLGPPSSGKTTLLLALAGRLG 186 (1085)
Q Consensus 161 G~~~~llGp~GsGKSTLL~~L~G~l~ 186 (1085)
|++++|+||||||||||++.|....+
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~ 27 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIP 27 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CeEEEEECCCCCCHHHHHHHHHhhCC
Confidence 88999999999999999999988764
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.47 E-value=0.00066 Score=65.51 Aligned_cols=39 Identities=26% Similarity=0.268 Sum_probs=27.7
Q ss_pred eEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCc
Q 001400 162 RLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGH 200 (1085)
Q Consensus 162 ~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~ 200 (1085)
++++|+|++|||||||++.|...+......-|.|..+++
T Consensus 2 kii~I~G~~gSGKTTli~~l~~~L~~~g~~v~vik~d~~ 40 (165)
T d1xjca_ 2 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGH 40 (165)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC-
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHhCCCeEEEEEeccC
Confidence 478999999999999999999887643222344444443
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=96.36 E-value=9.1e-05 Score=73.80 Aligned_cols=35 Identities=23% Similarity=0.138 Sum_probs=29.5
Q ss_pred cccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhC
Q 001400 151 LDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLG 186 (1085)
Q Consensus 151 L~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~ 186 (1085)
+++.++.+.+| +++|+|||||||||+|.+|.-.+.
T Consensus 15 ~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~~L~ 49 (222)
T d1qhla_ 15 FFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTALI 49 (222)
T ss_dssp EEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHHHHS
T ss_pred EeeEEEEcCCC-eEEEECCCCCCHHHHHHHHHHHhc
Confidence 46677778776 999999999999999999986553
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=96.34 E-value=0.00084 Score=65.00 Aligned_cols=28 Identities=29% Similarity=0.248 Sum_probs=25.5
Q ss_pred eCCeEEEEeCCCCCChhHHHHHHHhhhC
Q 001400 159 RPSRLTLLLGPPSSGKTTLLLALAGRLG 186 (1085)
Q Consensus 159 ~~G~~~~llGp~GsGKSTLL~~L~G~l~ 186 (1085)
++|.++.|+|+|||||||+-++|+-++.
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L~ 31 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTLN 31 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4689999999999999999999998774
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=96.30 E-value=0.00082 Score=65.42 Aligned_cols=25 Identities=36% Similarity=0.493 Sum_probs=22.6
Q ss_pred eEEEEeCCCCCChhHHHHHHHhhhC
Q 001400 162 RLTLLLGPPSSGKTTLLLALAGRLG 186 (1085)
Q Consensus 162 ~~~~llGp~GsGKSTLL~~L~G~l~ 186 (1085)
+.++|.||+|||||||.+.|+..++
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~~ 32 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVFN 32 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999998764
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=96.29 E-value=0.051 Score=54.31 Aligned_cols=33 Identities=30% Similarity=0.439 Sum_probs=26.5
Q ss_pred ecccc-eeeEeCCeEEEEeCCCCCChhHHHHHHH
Q 001400 150 ILDDL-SGIIRPSRLTLLLGPPSSGKTTLLLALA 182 (1085)
Q Consensus 150 iL~~v-s~~i~~G~~~~llGp~GsGKSTLL~~L~ 182 (1085)
-|+++ +|=+++|+++.|.|+||+|||||+.-++
T Consensus 14 ~LD~~l~GGi~~G~~~~I~G~~G~GKT~la~~~~ 47 (242)
T d1tf7a1 14 GFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFL 47 (242)
T ss_dssp THHHHTTSSEETTSEEEEEESTTSSHHHHHHHHH
T ss_pred HHHHhhcCCCcCCeEEEEEeCCCCCHHHHHHHHH
Confidence 45553 4569999999999999999999986544
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=96.29 E-value=0.00092 Score=64.25 Aligned_cols=25 Identities=36% Similarity=0.585 Sum_probs=22.4
Q ss_pred eEEEEeCCCCCChhHHHHHHHhhhC
Q 001400 162 RLTLLLGPPSSGKTTLLLALAGRLG 186 (1085)
Q Consensus 162 ~~~~llGp~GsGKSTLL~~L~G~l~ 186 (1085)
.+++|.|||||||||+.+.|+..++
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~~ 27 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQLD 27 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4789999999999999999998763
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=96.24 E-value=0.017 Score=59.98 Aligned_cols=47 Identities=13% Similarity=0.154 Sum_probs=32.2
Q ss_pred HhCCCcEeEEeCCCCC-----CCHHHHHHHHHHHHHHHhccCCEEEEEEecCh
Q 001400 321 LVGPARVLFMDEISNG-----LDSSTTYQIIKYLKHSTRALDGTTVISLLQPA 368 (1085)
Q Consensus 321 l~~~p~vlllDEptsg-----LD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~ 368 (1085)
-..+++++++|--++- -|.....++++.|+.++...+. +++.+||..
T Consensus 129 ~~~~~~lvviD~l~~~~~~~~~~~~~~~~~~~~l~~la~~~~~-~vi~v~H~~ 180 (274)
T d1nlfa_ 129 AAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGC-SIVFLHHAS 180 (274)
T ss_dssp HHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCC-EEEEEEEC-
T ss_pred hccCccEEecCchhhhccccccchhhHHHHHHHHHHHhhcCCC-ceehhhhcc
Confidence 3468999999966431 2666677888889888876654 455566754
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=96.23 E-value=0.0001 Score=73.31 Aligned_cols=31 Identities=32% Similarity=0.360 Sum_probs=26.3
Q ss_pred eeeeeEEEeCCeEEEEEccCCCChhHHHhhhh
Q 001400 845 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLA 876 (1085)
Q Consensus 845 L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~ 876 (1085)
+++.++.+.+| ++.|+|+|||||||+|++|.
T Consensus 15 ~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~ 45 (222)
T d1qhla_ 15 FFARTFDLDEL-VTTLSGGNGAGKSTTMAAFV 45 (222)
T ss_dssp EEEEEECHHHH-HHHHHSCCSHHHHHHHHHHH
T ss_pred EeeEEEEcCCC-eEEEECCCCCCHHHHHHHHH
Confidence 34677777766 89999999999999999885
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.19 E-value=0.0011 Score=67.00 Aligned_cols=34 Identities=21% Similarity=0.511 Sum_probs=24.4
Q ss_pred CCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEE
Q 001400 854 PGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIY 889 (1085)
Q Consensus 854 ~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~ 889 (1085)
+|..++++|+||+|||||++.|.|... ...|+|.
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~--~~T~~vs 127 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLK--LRVSEVS 127 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCC--CC-----
T ss_pred cCCeEEEECCCCCCHHHHHHhhcchhh--hhccCcc
Confidence 478999999999999999999998533 2245553
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=96.17 E-value=0.0012 Score=63.66 Aligned_cols=27 Identities=30% Similarity=0.453 Sum_probs=24.0
Q ss_pred eCCeEEEEeCCCCCChhHHHHHHHhhh
Q 001400 159 RPSRLTLLLGPPSSGKTTLLLALAGRL 185 (1085)
Q Consensus 159 ~~G~~~~llGp~GsGKSTLL~~L~G~l 185 (1085)
++|-.++|.|||||||||+.+.|+-.+
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l 29 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAEL 29 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHh
Confidence 456788999999999999999999776
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.15 E-value=0.001 Score=64.66 Aligned_cols=26 Identities=42% Similarity=0.613 Sum_probs=23.2
Q ss_pred eEEEEeCCCCCChhHHHHHHHhhhCC
Q 001400 162 RLTLLLGPPSSGKTTLLLALAGRLGH 187 (1085)
Q Consensus 162 ~~~~llGp~GsGKSTLL~~L~G~l~~ 187 (1085)
+.+.|.||||+|||||++.++..+..
T Consensus 2 k~v~ItG~~GtGKTtl~~~i~~~l~~ 27 (189)
T d2i3ba1 2 RHVFLTGPPGVGKTTLIHKASEVLKS 27 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHH
Confidence 45899999999999999999998754
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=96.14 E-value=0.0004 Score=70.50 Aligned_cols=34 Identities=29% Similarity=0.503 Sum_probs=22.3
Q ss_pred CCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEE
Q 001400 160 PSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKIT 196 (1085)
Q Consensus 160 ~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~ 196 (1085)
+|+.++++|+||+|||||+|+|.|...- ..|+|.
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~---~t~~vs 129 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELGL---RTNEIS 129 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC-------------
T ss_pred ccceEEEECCCCccHHHHHHhhccHhHh---hhcccc
Confidence 4778899999999999999999876532 367775
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=96.05 E-value=0.0015 Score=62.93 Aligned_cols=26 Identities=31% Similarity=0.496 Sum_probs=23.7
Q ss_pred CeEEEEeCCCCCChhHHHHHHHhhhC
Q 001400 161 SRLTLLLGPPSSGKTTLLLALAGRLG 186 (1085)
Q Consensus 161 G~~~~llGp~GsGKSTLL~~L~G~l~ 186 (1085)
.+++.|.|+|||||||+.+.|+..++
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 46889999999999999999998875
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=96.03 E-value=0.0015 Score=61.65 Aligned_cols=22 Identities=32% Similarity=0.539 Sum_probs=19.7
Q ss_pred eEEEEeCCCCCChhHHHHHHHh
Q 001400 162 RLTLLLGPPSSGKTTLLLALAG 183 (1085)
Q Consensus 162 ~~~~llGp~GsGKSTLL~~L~G 183 (1085)
+++.|.||||||||||.+.|..
T Consensus 3 klIii~G~pGsGKTTla~~L~~ 24 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIA 24 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 5788999999999999998864
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=95.97 E-value=0.0015 Score=62.73 Aligned_cols=23 Identities=52% Similarity=0.668 Sum_probs=20.8
Q ss_pred EEEeCCCCCChhHHHHHHHhhhC
Q 001400 164 TLLLGPPSSGKTTLLLALAGRLG 186 (1085)
Q Consensus 164 ~~llGp~GsGKSTLL~~L~G~l~ 186 (1085)
++|+|||||||||+.+.|+-+++
T Consensus 7 I~i~G~pGsGKTTia~~La~~l~ 29 (173)
T d1rkba_ 7 ILLTGTPGVGKTTLGKELASKSG 29 (173)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
Confidence 67999999999999999998764
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.95 E-value=0.0014 Score=64.16 Aligned_cols=24 Identities=38% Similarity=0.574 Sum_probs=22.2
Q ss_pred CeEEEEEccCCCChhHHHhhhhCC
Q 001400 855 GVLTALVGVSGAGKTTLMDVLAGR 878 (1085)
Q Consensus 855 Ge~~al~G~nGaGKSTLl~~l~g~ 878 (1085)
|.++.|+||||||||||++.|...
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~ 25 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRER 25 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHhh
Confidence 889999999999999999999764
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=95.81 E-value=0.0017 Score=62.22 Aligned_cols=21 Identities=48% Similarity=0.580 Sum_probs=19.7
Q ss_pred EEEEEccCCCChhHHHhhhhC
Q 001400 857 LTALVGVSGAGKTTLMDVLAG 877 (1085)
Q Consensus 857 ~~al~G~nGaGKSTLl~~l~g 877 (1085)
+++|+|++|||||||++.|+.
T Consensus 4 vi~itG~~GSGKTTL~~~L~~ 24 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIP 24 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 689999999999999999985
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=95.78 E-value=0.0023 Score=62.96 Aligned_cols=27 Identities=37% Similarity=0.516 Sum_probs=23.8
Q ss_pred eCCeEEEEeCCCCCChhHHHHHHHhhh
Q 001400 159 RPSRLTLLLGPPSSGKTTLLLALAGRL 185 (1085)
Q Consensus 159 ~~G~~~~llGp~GsGKSTLL~~L~G~l 185 (1085)
++|-.++|+|||||||||..+.|+-.+
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~~~ 27 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAKNF 27 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHHHHh
Confidence 467778899999999999999999766
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=95.71 E-value=0.0019 Score=63.92 Aligned_cols=28 Identities=25% Similarity=0.504 Sum_probs=24.6
Q ss_pred EeCCeEEEEeCCCCCChhHHHHHHHhhh
Q 001400 158 IRPSRLTLLLGPPSSGKTTLLLALAGRL 185 (1085)
Q Consensus 158 i~~G~~~~llGp~GsGKSTLL~~L~G~l 185 (1085)
++.+.++.|+|||||||||+.+.|+-.+
T Consensus 5 ~~~~~iI~l~G~pGSGKsT~a~~La~~~ 32 (194)
T d3adka_ 5 LKKSKIIFVVGGPGSGKGTQCEKIVQKY 32 (194)
T ss_dssp HHTSCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 3456789999999999999999999765
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=95.71 E-value=0.0024 Score=62.00 Aligned_cols=26 Identities=23% Similarity=0.327 Sum_probs=23.4
Q ss_pred eEEEEeCCCCCChhHHHHHHHhhhCC
Q 001400 162 RLTLLLGPPSSGKTTLLLALAGRLGH 187 (1085)
Q Consensus 162 ~~~~llGp~GsGKSTLL~~L~G~l~~ 187 (1085)
++++|.|++||||||+.+.|+-++..
T Consensus 2 kiI~i~G~~GsGKsT~~~~L~~~l~~ 27 (190)
T d1khta_ 2 KVVVVTGVPGVGSTTSSQLAMDNLRK 27 (190)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 58999999999999999999987754
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=95.64 E-value=0.0027 Score=63.48 Aligned_cols=27 Identities=26% Similarity=0.412 Sum_probs=23.9
Q ss_pred CCeEEEEeCCCCCChhHHHHHHHhhhC
Q 001400 160 PSRLTLLLGPPSSGKTTLLLALAGRLG 186 (1085)
Q Consensus 160 ~G~~~~llGp~GsGKSTLL~~L~G~l~ 186 (1085)
.|.++.|+||||||||||.+.|.-..+
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~p 27 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQP 27 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhhCC
Confidence 488999999999999999999986643
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.62 E-value=0.0029 Score=63.00 Aligned_cols=30 Identities=30% Similarity=0.350 Sum_probs=27.0
Q ss_pred eeEeCCeEEEEeCCCCCChhHHHHHHHhhh
Q 001400 156 GIIRPSRLTLLLGPPSSGKTTLLLALAGRL 185 (1085)
Q Consensus 156 ~~i~~G~~~~llGp~GsGKSTLL~~L~G~l 185 (1085)
|=+++|+++.|.||||||||||+.-++...
T Consensus 18 GGi~~G~v~~i~G~~GsGKT~l~l~la~~~ 47 (242)
T d1n0wa_ 18 GGIETGSITEMFGEFRTGKTQICHTLAVTC 47 (242)
T ss_dssp TSEETTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCcCCEEEEEEeCCCCCHHHHHHHHHHHH
Confidence 569999999999999999999999888654
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=95.60 E-value=0.0027 Score=60.08 Aligned_cols=24 Identities=38% Similarity=0.537 Sum_probs=21.1
Q ss_pred EEEEeCCCCCChhHHHHHHHhhhC
Q 001400 163 LTLLLGPPSSGKTTLLLALAGRLG 186 (1085)
Q Consensus 163 ~~~llGp~GsGKSTLL~~L~G~l~ 186 (1085)
.+.|+||+||||||+-+.|+-.++
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~L~ 27 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQLN 27 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHTT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 467889999999999999998763
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=95.59 E-value=0.0022 Score=63.45 Aligned_cols=22 Identities=27% Similarity=0.428 Sum_probs=20.6
Q ss_pred EEEEeCCCCCChhHHHHHHHhh
Q 001400 163 LTLLLGPPSSGKTTLLLALAGR 184 (1085)
Q Consensus 163 ~~~llGp~GsGKSTLL~~L~G~ 184 (1085)
.++|+|++|||||||+++|+|.
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~ 46 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHhcCC
Confidence 4999999999999999999985
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=95.58 E-value=0.0029 Score=62.38 Aligned_cols=24 Identities=29% Similarity=0.491 Sum_probs=22.0
Q ss_pred eEEEEeCCCCCChhHHHHHHHhhh
Q 001400 162 RLTLLLGPPSSGKTTLLLALAGRL 185 (1085)
Q Consensus 162 ~~~~llGp~GsGKSTLL~~L~G~l 185 (1085)
.+++|+|||||||||+.+.|+-.+
T Consensus 7 ~iI~i~G~pGSGKsT~a~~La~~~ 30 (194)
T d1qf9a_ 7 NVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 588999999999999999999765
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=95.55 E-value=0.0029 Score=60.91 Aligned_cols=26 Identities=35% Similarity=0.533 Sum_probs=23.5
Q ss_pred CCeEEEEEccCCCChhHHHhhhhCCC
Q 001400 854 PGVLTALVGVSGAGKTTLMDVLAGRK 879 (1085)
Q Consensus 854 ~Ge~~al~G~nGaGKSTLl~~l~g~~ 879 (1085)
.|+++.|.|++||||||+.+.|+...
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~l 28 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLP 28 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999999998753
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=95.53 E-value=0.0012 Score=66.79 Aligned_cols=34 Identities=24% Similarity=0.418 Sum_probs=22.3
Q ss_pred CCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEE
Q 001400 854 PGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIY 889 (1085)
Q Consensus 854 ~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~ 889 (1085)
+|..++++|+||+|||||++.|.|... ...|+|.
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~--~~t~~vs 129 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELG--LRTNEIS 129 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC------------
T ss_pred ccceEEEECCCCccHHHHHHhhccHhH--hhhcccc
Confidence 477889999999999999999998532 2345554
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=95.53 E-value=0.014 Score=60.56 Aligned_cols=46 Identities=20% Similarity=0.229 Sum_probs=33.6
Q ss_pred HHhcCCCEEEEeCCCC-----CCCHHHHHHHHHHHHHHHH-CCceEEEEecC
Q 001400 982 ELVANPSIVFMDEPTS-----GLDARAAAIVMRTVRNIVN-TGRTIVCTIHQ 1027 (1085)
Q Consensus 982 aL~~~p~illlDEPts-----gLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~ 1027 (1085)
.-..+|+++++|--++ --|......+++.++.+++ .|++||++.|-
T Consensus 128 ~~~~~~~lvviD~l~~~~~~~~~~~~~~~~~~~~l~~la~~~~~~vi~v~H~ 179 (274)
T d1nlfa_ 128 RAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFLHHA 179 (274)
T ss_dssp HHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEEEEEC
T ss_pred HhccCccEEecCchhhhccccccchhhHHHHHHHHHHHhhcCCCceehhhhc
Confidence 3457899999995442 1266666778888888765 48999999884
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.44 E-value=0.0036 Score=61.90 Aligned_cols=25 Identities=28% Similarity=0.395 Sum_probs=22.4
Q ss_pred CeEEEEeCCCCCChhHHHHHHHhhh
Q 001400 161 SRLTLLLGPPSSGKTTLLLALAGRL 185 (1085)
Q Consensus 161 G~~~~llGp~GsGKSTLL~~L~G~l 185 (1085)
-.+++|+|||||||||+.+.|+-.+
T Consensus 8 ~~iI~i~GppGSGKsT~a~~La~~~ 32 (196)
T d1ukza_ 8 VSVIFVLGGPGAGKGTQCEKLVKDY 32 (196)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 3478999999999999999999876
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.39 E-value=0.0023 Score=62.90 Aligned_cols=27 Identities=33% Similarity=0.322 Sum_probs=24.5
Q ss_pred CCeEEEEeCCCCCChhHHHHHHHhhhC
Q 001400 160 PSRLTLLLGPPSSGKTTLLLALAGRLG 186 (1085)
Q Consensus 160 ~G~~~~llGp~GsGKSTLL~~L~G~l~ 186 (1085)
.|.++.|.|+|||||||+-+.|+-++.
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~l~ 44 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEYLV 44 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 588999999999999999999998764
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=95.33 E-value=0.005 Score=62.72 Aligned_cols=24 Identities=33% Similarity=0.473 Sum_probs=21.2
Q ss_pred EEEEeCCCCCChhHHHHHHHhhhC
Q 001400 163 LTLLLGPPSSGKTTLLLALAGRLG 186 (1085)
Q Consensus 163 ~~~llGp~GsGKSTLL~~L~G~l~ 186 (1085)
+++|+||+|||||||++.|...+.
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~~~ 25 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRYLE 25 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCcHHHHHHHHHHHHh
Confidence 589999999999999999986554
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=95.31 E-value=0.0041 Score=64.50 Aligned_cols=26 Identities=38% Similarity=0.395 Sum_probs=23.2
Q ss_pred CeEEEEeCCCCCChhHHHHHHHhhhC
Q 001400 161 SRLTLLLGPPSSGKTTLLLALAGRLG 186 (1085)
Q Consensus 161 G~~~~llGp~GsGKSTLL~~L~G~l~ 186 (1085)
...++|.||||||||||.++|++.+.
T Consensus 32 P~~ilL~GpPGtGKT~la~~la~~~~ 57 (273)
T d1gvnb_ 32 PTAFLLGGQPGSGKTSLRSAIFEETQ 57 (273)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 34689999999999999999999875
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.28 E-value=0.0039 Score=60.60 Aligned_cols=23 Identities=30% Similarity=0.512 Sum_probs=20.8
Q ss_pred EEEeCCCCCChhHHHHHHHhhhC
Q 001400 164 TLLLGPPSSGKTTLLLALAGRLG 186 (1085)
Q Consensus 164 ~~llGp~GsGKSTLL~~L~G~l~ 186 (1085)
+.|+|||||||||+.+.|+-.++
T Consensus 3 I~i~G~pGSGKsT~a~~La~~~~ 25 (182)
T d1zina1 3 LVLMGLPGAGKGTQAEKIVAAYG 25 (182)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
Confidence 67999999999999999998763
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=95.27 E-value=0.0041 Score=59.53 Aligned_cols=23 Identities=43% Similarity=0.507 Sum_probs=20.8
Q ss_pred EEEeCCCCCChhHHHHHHHhhhC
Q 001400 164 TLLLGPPSSGKTTLLLALAGRLG 186 (1085)
Q Consensus 164 ~~llGp~GsGKSTLL~~L~G~l~ 186 (1085)
+.|+|+|||||||+.+.||-.+.
T Consensus 3 I~liG~~GsGKsTi~k~La~~l~ 25 (161)
T d1viaa_ 3 IVFIGFMGSGKSTLARALAKDLD 25 (161)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 57889999999999999998874
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=95.20 E-value=0.0038 Score=59.81 Aligned_cols=26 Identities=31% Similarity=0.500 Sum_probs=23.2
Q ss_pred eCCeEEEEEccCCCChhHHHhhhhCC
Q 001400 853 RPGVLTALVGVSGAGKTTLMDVLAGR 878 (1085)
Q Consensus 853 ~~Ge~~al~G~nGaGKSTLl~~l~g~ 878 (1085)
+.+.++.|+|++||||||+.+.|+..
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~ 29 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQ 29 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 35778999999999999999999864
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.20 E-value=0.0046 Score=60.90 Aligned_cols=24 Identities=29% Similarity=0.576 Sum_probs=21.6
Q ss_pred EEEEeCCCCCChhHHHHHHHhhhC
Q 001400 163 LTLLLGPPSSGKTTLLLALAGRLG 186 (1085)
Q Consensus 163 ~~~llGp~GsGKSTLL~~L~G~l~ 186 (1085)
+++|+|||||||||..+.|+-.++
T Consensus 3 iI~i~GppGSGKsT~a~~La~~~g 26 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEKYG 26 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 579999999999999999997763
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=95.12 E-value=0.0042 Score=61.27 Aligned_cols=23 Identities=39% Similarity=0.586 Sum_probs=20.7
Q ss_pred EEEEEccCCCChhHHHhhhhCCC
Q 001400 857 LTALVGVSGAGKTTLMDVLAGRK 879 (1085)
Q Consensus 857 ~~al~G~nGaGKSTLl~~l~g~~ 879 (1085)
.++|+|++|||||||++.|+|..
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~~ 47 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHhcCCC
Confidence 48999999999999999999854
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=95.10 E-value=0.0043 Score=59.66 Aligned_cols=26 Identities=23% Similarity=0.313 Sum_probs=23.5
Q ss_pred eCCeEEEEEccCCCChhHHHhhhhCC
Q 001400 853 RPGVLTALVGVSGAGKTTLMDVLAGR 878 (1085)
Q Consensus 853 ~~Ge~~al~G~nGaGKSTLl~~l~g~ 878 (1085)
++|-++.|+|++||||||+-+.|+-.
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~ 29 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVT 29 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999999854
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=95.08 E-value=0.0044 Score=60.85 Aligned_cols=23 Identities=26% Similarity=0.397 Sum_probs=20.7
Q ss_pred EEEEeCCCCCChhHHHHHHHhhh
Q 001400 163 LTLLLGPPSSGKTTLLLALAGRL 185 (1085)
Q Consensus 163 ~~~llGp~GsGKSTLL~~L~G~l 185 (1085)
.+.|+|||||||||+.+.|+-.+
T Consensus 5 ~I~i~GppGsGKsT~a~~La~~~ 27 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKTKY 27 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 36799999999999999999776
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=95.06 E-value=0.0048 Score=59.38 Aligned_cols=22 Identities=36% Similarity=0.646 Sum_probs=19.8
Q ss_pred EEEEeCCCCCChhHHHHHHHhh
Q 001400 163 LTLLLGPPSSGKTTLLLALAGR 184 (1085)
Q Consensus 163 ~~~llGp~GsGKSTLL~~L~G~ 184 (1085)
.++|+|++|+|||||++.|+|.
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~ 23 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKK 23 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4799999999999999999875
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=95.05 E-value=0.0053 Score=59.81 Aligned_cols=24 Identities=29% Similarity=0.468 Sum_probs=21.3
Q ss_pred EEEEeCCCCCChhHHHHHHHhhhC
Q 001400 163 LTLLLGPPSSGKTTLLLALAGRLG 186 (1085)
Q Consensus 163 ~~~llGp~GsGKSTLL~~L~G~l~ 186 (1085)
.+.|+|||||||||+.+.|+-.+.
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~g 25 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEKYG 25 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Confidence 367999999999999999998763
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.02 E-value=0.0059 Score=59.11 Aligned_cols=25 Identities=20% Similarity=0.344 Sum_probs=21.5
Q ss_pred eCCeEEEEeCCCCCChhHHHHHHHh
Q 001400 159 RPSRLTLLLGPPSSGKTTLLLALAG 183 (1085)
Q Consensus 159 ~~G~~~~llGp~GsGKSTLL~~L~G 183 (1085)
++-+++.++|+|||||||+.+.|+-
T Consensus 12 ~~p~liil~G~pGsGKST~a~~l~~ 36 (172)
T d1yj5a2 12 PNPEVVVAVGFPGAGKSTFIQEHLV 36 (172)
T ss_dssp SSCCEEEEECCTTSSHHHHHHHHTG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3457999999999999999998853
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.02 E-value=0.0059 Score=59.49 Aligned_cols=25 Identities=20% Similarity=0.315 Sum_probs=21.9
Q ss_pred eEEEEeCCCCCChhHHHHHHHhhhC
Q 001400 162 RLTLLLGPPSSGKTTLLLALAGRLG 186 (1085)
Q Consensus 162 ~~~~llGp~GsGKSTLL~~L~G~l~ 186 (1085)
+.+.|+||||||||||++.|....+
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~~~~ 28 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLITKHP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CcEEEECCCCCCHHHHHHHHHHhCC
Confidence 5789999999999999999986544
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=95.01 E-value=0.0049 Score=61.59 Aligned_cols=24 Identities=38% Similarity=0.562 Sum_probs=21.8
Q ss_pred CCeEEEEEccCCCChhHHHhhhhC
Q 001400 854 PGVLTALVGVSGAGKTTLMDVLAG 877 (1085)
Q Consensus 854 ~Ge~~al~G~nGaGKSTLl~~l~g 877 (1085)
.|.++.|+||||+|||||++.|.-
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~ 24 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLK 24 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHh
Confidence 488999999999999999998864
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.00 E-value=0.005 Score=60.32 Aligned_cols=24 Identities=38% Similarity=0.319 Sum_probs=21.6
Q ss_pred EEEEeCCCCCChhHHHHHHHhhhC
Q 001400 163 LTLLLGPPSSGKTTLLLALAGRLG 186 (1085)
Q Consensus 163 ~~~llGp~GsGKSTLL~~L~G~l~ 186 (1085)
+++|-||+|||||||.+.|+-.+.
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~l~ 47 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQTLR 47 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 688999999999999999987664
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=94.99 E-value=0.0031 Score=61.61 Aligned_cols=21 Identities=43% Similarity=0.564 Sum_probs=19.4
Q ss_pred EEEeCCCCCChhHHHHHHHhh
Q 001400 164 TLLLGPPSSGKTTLLLALAGR 184 (1085)
Q Consensus 164 ~~llGp~GsGKSTLL~~L~G~ 184 (1085)
++|+|++++|||||++.|+|.
T Consensus 4 VaiiG~~nvGKSSLin~L~~~ 24 (185)
T d1lnza2 4 VGLVGFPSVGKSTLLSVVSSA 24 (185)
T ss_dssp EEEESSTTSSHHHHHHHSEEE
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 699999999999999999764
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.99 E-value=0.0047 Score=59.16 Aligned_cols=36 Identities=31% Similarity=0.399 Sum_probs=24.7
Q ss_pred EEEEEccCCCChhHHHhhhhCCC-CCCeeeeEEEEcC
Q 001400 857 LTALVGVSGAGKTTLMDVLAGRK-TGGIIEGDIYISG 892 (1085)
Q Consensus 857 ~~al~G~nGaGKSTLl~~l~g~~-~~~~~~G~i~i~g 892 (1085)
+++|+|++|||||||+.-|.... ..|..-|-|.-++
T Consensus 3 ii~I~G~~gSGKTTli~~l~~~L~~~g~~v~vik~d~ 39 (165)
T d1xjca_ 3 VWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHG 39 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhCCCeEEEEEecc
Confidence 68999999999999998887632 2223345554343
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.97 E-value=0.0053 Score=60.97 Aligned_cols=22 Identities=41% Similarity=0.626 Sum_probs=20.4
Q ss_pred EEEEeCCCCCChhHHHHHHHhh
Q 001400 163 LTLLLGPPSSGKTTLLLALAGR 184 (1085)
Q Consensus 163 ~~~llGp~GsGKSTLL~~L~G~ 184 (1085)
.++|+|++|||||||++.|.|.
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~ 26 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTD 26 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999874
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=94.97 E-value=0.0042 Score=60.44 Aligned_cols=22 Identities=32% Similarity=0.631 Sum_probs=20.2
Q ss_pred EEEEeCCCCCChhHHHHHHHhh
Q 001400 163 LTLLLGPPSSGKTTLLLALAGR 184 (1085)
Q Consensus 163 ~~~llGp~GsGKSTLL~~L~G~ 184 (1085)
.++|+|++|+|||||+++|.|.
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~ 23 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGK 23 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999885
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.97 E-value=0.0053 Score=60.22 Aligned_cols=24 Identities=33% Similarity=0.506 Sum_probs=21.3
Q ss_pred EEEEeCCCCCChhHHHHHHHhhhC
Q 001400 163 LTLLLGPPSSGKTTLLLALAGRLG 186 (1085)
Q Consensus 163 ~~~llGp~GsGKSTLL~~L~G~l~ 186 (1085)
-++|+||||||||||++.|+-..+
T Consensus 3 pIvl~GpsG~GK~tl~~~L~~~~~ 26 (186)
T d1gkya_ 3 PIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCT
T ss_pred eEEEECCCCCCHHHHHHHHHHhCC
Confidence 378999999999999999987764
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.95 E-value=0.0056 Score=58.64 Aligned_cols=23 Identities=48% Similarity=0.687 Sum_probs=20.4
Q ss_pred EEEeCCCCCChhHHHHHHHhhhC
Q 001400 164 TLLLGPPSSGKTTLLLALAGRLG 186 (1085)
Q Consensus 164 ~~llGp~GsGKSTLL~~L~G~l~ 186 (1085)
+.++|++||||||+-+.|+-++.
T Consensus 4 IvliG~~G~GKSTig~~La~~l~ 26 (165)
T d2iyva1 4 AVLVGLPGSGKSTIGRRLAKALG 26 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 45779999999999999998874
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=94.92 E-value=0.0056 Score=59.01 Aligned_cols=24 Identities=33% Similarity=0.432 Sum_probs=21.2
Q ss_pred EEEEeCCCCCChhHHHHHHHhhhC
Q 001400 163 LTLLLGPPSSGKTTLLLALAGRLG 186 (1085)
Q Consensus 163 ~~~llGp~GsGKSTLL~~L~G~l~ 186 (1085)
.+.|+|++||||||+-+.||-.++
T Consensus 4 ~Iil~G~~GsGKSTia~~LA~~Lg 27 (170)
T d1e6ca_ 4 PIFMVGARGCGMTTVGRELARALG 27 (170)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC
Confidence 356899999999999999998774
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=94.90 E-value=0.004 Score=66.72 Aligned_cols=34 Identities=21% Similarity=0.240 Sum_probs=28.2
Q ss_pred eeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCC
Q 001400 155 SGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHH 188 (1085)
Q Consensus 155 s~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~ 188 (1085)
...++.|.-++|.||.||||||||++|.+.+++.
T Consensus 160 ~~~v~~~~nili~G~tgSGKTT~l~al~~~i~~~ 193 (323)
T d1g6oa_ 160 KDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKE 193 (323)
T ss_dssp HHHHHHTCCEEEEESTTSSHHHHHHHHGGGSCTT
T ss_pred HHHHHhCCCEEEEeeccccchHHHHHHhhhcccc
Confidence 3345666778999999999999999999988764
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=94.87 E-value=0.0056 Score=58.69 Aligned_cols=26 Identities=27% Similarity=0.599 Sum_probs=23.0
Q ss_pred eCCeEEEEEccCCCChhHHHhhhhCC
Q 001400 853 RPGVLTALVGVSGAGKTTLMDVLAGR 878 (1085)
Q Consensus 853 ~~Ge~~al~G~nGaGKSTLl~~l~g~ 878 (1085)
++|-.++|+|++||||||+.+.|+-.
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~ 28 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAE 28 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHH
Confidence 35778999999999999999999854
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=94.87 E-value=0.006 Score=59.31 Aligned_cols=26 Identities=27% Similarity=0.516 Sum_probs=22.9
Q ss_pred eEEEEeCCCCCChhHHHHHHHhhhCC
Q 001400 162 RLTLLLGPPSSGKTTLLLALAGRLGH 187 (1085)
Q Consensus 162 ~~~~llGp~GsGKSTLL~~L~G~l~~ 187 (1085)
+++.|.|++||||||+.+.|+.++..
T Consensus 2 kiivi~G~~GsGKTT~~~~La~~L~~ 27 (194)
T d1nksa_ 2 KIGIVTGIPGVGKSTVLAKVKEILDN 27 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 46788999999999999999998754
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=94.83 E-value=0.0059 Score=57.46 Aligned_cols=21 Identities=38% Similarity=0.528 Sum_probs=19.2
Q ss_pred EEEeCCCCCChhHHHHHHHhh
Q 001400 164 TLLLGPPSSGKTTLLLALAGR 184 (1085)
Q Consensus 164 ~~llGp~GsGKSTLL~~L~G~ 184 (1085)
++|+|++|||||||++.|.+.
T Consensus 3 ivlvG~~~vGKSsLi~~l~~~ 23 (160)
T d1r8sa_ 3 ILMVGLDAAGKTTILYKLKLG 23 (160)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 679999999999999999864
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=94.79 E-value=0.22 Score=49.26 Aligned_cols=27 Identities=33% Similarity=0.412 Sum_probs=23.0
Q ss_pred EEEeCCeEEEEEccCCCChhHHHhhhh
Q 001400 850 GAFRPGVLTALVGVSGAGKTTLMDVLA 876 (1085)
Q Consensus 850 ~~i~~Ge~~al~G~nGaGKSTLl~~l~ 876 (1085)
+-+++|+++.|.|++|+|||||..-++
T Consensus 21 GGi~~G~~~~I~G~~G~GKT~la~~~~ 47 (242)
T d1tf7a1 21 GGLPIGRSTLVSGTSGTGKTLFSIQFL 47 (242)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHH
T ss_pred CCCcCCeEEEEEeCCCCCHHHHHHHHH
Confidence 348899999999999999999975443
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=94.78 E-value=0.0064 Score=57.63 Aligned_cols=23 Identities=48% Similarity=0.765 Sum_probs=20.8
Q ss_pred eEEEEeCCCCCChhHHHHHHHhh
Q 001400 162 RLTLLLGPPSSGKTTLLLALAGR 184 (1085)
Q Consensus 162 ~~~~llGp~GsGKSTLL~~L~G~ 184 (1085)
=-++|+|++|+|||||++.|+|.
T Consensus 2 ~kI~lvG~~nvGKSsLin~l~~~ 24 (161)
T d2gj8a1 2 MKVVIAGRPNAGKSSLLNALAGR 24 (161)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35789999999999999999975
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.74 E-value=0.0068 Score=58.89 Aligned_cols=24 Identities=54% Similarity=0.858 Sum_probs=21.1
Q ss_pred EEEEeCCCCCChhHHHHHHHhhhC
Q 001400 163 LTLLLGPPSSGKTTLLLALAGRLG 186 (1085)
Q Consensus 163 ~~~llGp~GsGKSTLL~~L~G~l~ 186 (1085)
.+.|+|||||||||+.+.|+-.+.
T Consensus 2 ~I~i~G~pGsGKsT~a~~La~~~g 25 (181)
T d2cdna1 2 RVLLLGPPGAGKGTQAVKLAEKLG 25 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Confidence 367999999999999999997763
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.73 E-value=0.0069 Score=58.90 Aligned_cols=23 Identities=39% Similarity=0.647 Sum_probs=20.4
Q ss_pred EEEEeCCCCCChhHHHHHHHhhh
Q 001400 163 LTLLLGPPSSGKTTLLLALAGRL 185 (1085)
Q Consensus 163 ~~~llGp~GsGKSTLL~~L~G~l 185 (1085)
.+.|+|||||||||+.+.|+-.+
T Consensus 4 rIvl~G~pGSGKtT~a~~La~~~ 26 (180)
T d1akya1 4 RMVLIGPPGAGKGTQAPNLQERF 26 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 35688999999999999999776
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.71 E-value=0.0066 Score=57.18 Aligned_cols=22 Identities=45% Similarity=0.548 Sum_probs=19.8
Q ss_pred EEEEeCCCCCChhHHHHHHHhh
Q 001400 163 LTLLLGPPSSGKTTLLLALAGR 184 (1085)
Q Consensus 163 ~~~llGp~GsGKSTLL~~L~G~ 184 (1085)
.++|+|++|+|||||++.|.+.
T Consensus 2 KI~liG~~nvGKSSLln~l~~~ 23 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKND 23 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4679999999999999999874
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=94.71 E-value=0.0053 Score=59.28 Aligned_cols=23 Identities=30% Similarity=0.455 Sum_probs=20.6
Q ss_pred eEEEEEccCCCChhHHHhhhhCC
Q 001400 856 VLTALVGVSGAGKTTLMDVLAGR 878 (1085)
Q Consensus 856 e~~al~G~nGaGKSTLl~~l~g~ 878 (1085)
..++|+|+.|||||||.+.|+..
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~ 30 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAV 30 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999863
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=94.69 E-value=0.0075 Score=59.31 Aligned_cols=23 Identities=26% Similarity=0.479 Sum_probs=20.6
Q ss_pred EEEEeCCCCCChhHHHHHHHhhh
Q 001400 163 LTLLLGPPSSGKTTLLLALAGRL 185 (1085)
Q Consensus 163 ~~~llGp~GsGKSTLL~~L~G~l 185 (1085)
.++|+|||||||||+-+.|+-.+
T Consensus 8 rIiliG~PGSGKtT~a~~La~~~ 30 (189)
T d2ak3a1 8 RAAIMGAPGSGKGTVSSRITKHF 30 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHB
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 56789999999999999999765
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=94.68 E-value=0.0065 Score=59.17 Aligned_cols=22 Identities=32% Similarity=0.582 Sum_probs=20.4
Q ss_pred EEEEeCCCCCChhHHHHHHHhh
Q 001400 163 LTLLLGPPSSGKTTLLLALAGR 184 (1085)
Q Consensus 163 ~~~llGp~GsGKSTLL~~L~G~ 184 (1085)
.++|+|++|+|||||+++|.|.
T Consensus 10 kV~iiG~~~~GKSTLin~l~~~ 31 (186)
T d1mkya2 10 KVAIVGRPNVGKSTLFNAILNK 31 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 4899999999999999999874
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=94.65 E-value=0.046 Score=56.15 Aligned_cols=23 Identities=39% Similarity=0.528 Sum_probs=20.1
Q ss_pred CeEEEEEccCCCChhHHHhhhhC
Q 001400 855 GVLTALVGVSGAGKTTLMDVLAG 877 (1085)
Q Consensus 855 Ge~~al~G~nGaGKSTLl~~l~g 877 (1085)
..-+.|.||.|+|||+|.+.|+.
T Consensus 45 ~~~iLL~GppGtGKT~la~~iA~ 67 (256)
T d1lv7a_ 45 PKGVLMVGPPGTGKTLLAKAIAG 67 (256)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEeeCCCCCCccHHHHHHHH
Confidence 34567999999999999999995
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.63 E-value=0.0076 Score=59.31 Aligned_cols=23 Identities=39% Similarity=0.561 Sum_probs=20.8
Q ss_pred EEEeCCCCCChhHHHHHHHhhhC
Q 001400 164 TLLLGPPSSGKTTLLLALAGRLG 186 (1085)
Q Consensus 164 ~~llGp~GsGKSTLL~~L~G~l~ 186 (1085)
++|+||||||||||.+.|+-..+
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~~~ 25 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQEHS 25 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHhCC
Confidence 67999999999999999987764
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=94.62 E-value=0.0072 Score=56.60 Aligned_cols=22 Identities=23% Similarity=0.421 Sum_probs=19.3
Q ss_pred eEEEEEccCCCChhHHHhhhhC
Q 001400 856 VLTALVGVSGAGKTTLMDVLAG 877 (1085)
Q Consensus 856 e~~al~G~nGaGKSTLl~~l~g 877 (1085)
.++.|.|++|||||||.+.|..
T Consensus 3 klIii~G~pGsGKTTla~~L~~ 24 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIA 24 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4788999999999999998764
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.59 E-value=0.0079 Score=59.64 Aligned_cols=24 Identities=33% Similarity=0.520 Sum_probs=21.7
Q ss_pred EEEEeCCCCCChhHHHHHHHhhhC
Q 001400 163 LTLLLGPPSSGKTTLLLALAGRLG 186 (1085)
Q Consensus 163 ~~~llGp~GsGKSTLL~~L~G~l~ 186 (1085)
+++++|.||||||||.+.|+..+.
T Consensus 4 li~l~GlpgsGKSTla~~L~~~l~ 27 (213)
T d1bifa1 4 LIVMVGLPARGKTYISKKLTRYLN 27 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999997664
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=94.55 E-value=0.0078 Score=58.09 Aligned_cols=22 Identities=41% Similarity=0.717 Sum_probs=20.1
Q ss_pred EEEEeCCCCCChhHHHHHHHhh
Q 001400 163 LTLLLGPPSSGKTTLLLALAGR 184 (1085)
Q Consensus 163 ~~~llGp~GsGKSTLL~~L~G~ 184 (1085)
.++|+|.+|+|||||+|+|.|.
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4799999999999999999874
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.55 E-value=0.0075 Score=61.22 Aligned_cols=28 Identities=32% Similarity=0.401 Sum_probs=25.2
Q ss_pred eeEeCCeEEEEeCCCCCChhHHHHHHHh
Q 001400 156 GIIRPSRLTLLLGPPSSGKTTLLLALAG 183 (1085)
Q Consensus 156 ~~i~~G~~~~llGp~GsGKSTLL~~L~G 183 (1085)
|=+++|+++.|.||||||||||..-++-
T Consensus 29 GGi~~G~~~li~G~pGsGKT~l~lq~~~ 56 (251)
T d1szpa2 29 GGVETGSITELFGEFRTGKSQLCHTLAV 56 (251)
T ss_dssp SSEESSSEEEEEESTTSSHHHHHHHHTT
T ss_pred CCCcCCeEEEEEcCCCCCHHHHHHHHHH
Confidence 4699999999999999999999987763
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=94.53 E-value=0.008 Score=58.26 Aligned_cols=24 Identities=33% Similarity=0.524 Sum_probs=20.8
Q ss_pred EEEEeCCCCCChhHHHHHHHhhhC
Q 001400 163 LTLLLGPPSSGKTTLLLALAGRLG 186 (1085)
Q Consensus 163 ~~~llGp~GsGKSTLL~~L~G~l~ 186 (1085)
.++|+|||||||||..+.|+-.++
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~~~~ 25 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIMEKYG 25 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 367899999999999999997653
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=94.52 E-value=0.0082 Score=58.14 Aligned_cols=22 Identities=41% Similarity=0.679 Sum_probs=20.8
Q ss_pred EEEEeCCCCCChhHHHHHHHhh
Q 001400 163 LTLLLGPPSSGKTTLLLALAGR 184 (1085)
Q Consensus 163 ~~~llGp~GsGKSTLL~~L~G~ 184 (1085)
.++|+|++|+|||||++.|.|.
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~ 28 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGV 28 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6999999999999999999985
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=94.49 E-value=0.014 Score=61.56 Aligned_cols=44 Identities=16% Similarity=0.225 Sum_probs=34.6
Q ss_pred EEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCCCceEEEEccCCCCCCC
Q 001400 163 LTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAE 223 (1085)
Q Consensus 163 ~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~~~~~~yv~Q~d~~~~~ 223 (1085)
+++|-|++||||||+.+.|.-.+... .....+..+++|+.+.++
T Consensus 82 iIGIaG~sgSGKSTla~~L~~lL~~~-----------------~~~~~v~~Is~D~F~~~~ 125 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQALLSRW-----------------PEHRRVELITTDGFLHPN 125 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHTTS-----------------TTCCCEEEEEGGGGBCCH
T ss_pred EEEEeCCCCCCCcHHHHHHHHHHhhh-----------------cCCCceEEEeeeeeECCc
Confidence 88999999999999999999877421 011357889999987764
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=94.48 E-value=0.0092 Score=56.48 Aligned_cols=25 Identities=40% Similarity=0.769 Sum_probs=22.2
Q ss_pred CeEEEEEccCCCChhHHHhhhhCCC
Q 001400 855 GVLTALVGVSGAGKTTLMDVLAGRK 879 (1085)
Q Consensus 855 Ge~~al~G~nGaGKSTLl~~l~g~~ 879 (1085)
|=.++|+|+.|+|||||++.|+|..
T Consensus 1 ~~kI~lvG~~nvGKSsLin~l~~~~ 25 (161)
T d2gj8a1 1 GMKVVIAGRPNAGKSSLLNALAGRE 25 (161)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4578999999999999999999854
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=94.47 E-value=0.0071 Score=60.60 Aligned_cols=24 Identities=38% Similarity=0.495 Sum_probs=22.6
Q ss_pred EEEEeCCCCCChhHHHHHHHhhhC
Q 001400 163 LTLLLGPPSSGKTTLLLALAGRLG 186 (1085)
Q Consensus 163 ~~~llGp~GsGKSTLL~~L~G~l~ 186 (1085)
+++|.|||||||||+-+.|+.++.
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~g 28 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEALQ 28 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 889999999999999999999885
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=94.47 E-value=0.0075 Score=58.48 Aligned_cols=23 Identities=39% Similarity=0.570 Sum_probs=20.7
Q ss_pred EEEEEccCCCChhHHHhhhhCCC
Q 001400 857 LTALVGVSGAGKTTLMDVLAGRK 879 (1085)
Q Consensus 857 ~~al~G~nGaGKSTLl~~l~g~~ 879 (1085)
-++|+|++|+|||||++.|+|..
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~~ 24 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGKK 24 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 37999999999999999999853
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=94.44 E-value=0.0083 Score=56.85 Aligned_cols=21 Identities=43% Similarity=0.569 Sum_probs=19.6
Q ss_pred EEEeCCCCCChhHHHHHHHhh
Q 001400 164 TLLLGPPSSGKTTLLLALAGR 184 (1085)
Q Consensus 164 ~~llGp~GsGKSTLL~~L~G~ 184 (1085)
++|+|++|+|||||++.+.+.
T Consensus 8 I~ivG~~~vGKSSLi~~~~~~ 28 (169)
T d1upta_ 8 ILILGLDGAGKTTILYRLQVG 28 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 789999999999999999875
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=94.42 E-value=0.0052 Score=59.69 Aligned_cols=21 Identities=38% Similarity=0.608 Sum_probs=19.5
Q ss_pred EEEeCCCCCChhHHHHHHHhh
Q 001400 164 TLLLGPPSSGKTTLLLALAGR 184 (1085)
Q Consensus 164 ~~llGp~GsGKSTLL~~L~G~ 184 (1085)
++|+|++|+|||||++.|+|.
T Consensus 4 VaivG~~nvGKSTLin~L~~~ 24 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRA 24 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSS
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 799999999999999999874
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=94.38 E-value=0.0056 Score=59.14 Aligned_cols=22 Identities=41% Similarity=0.510 Sum_probs=19.8
Q ss_pred EEEEeCCCCCChhHHHHHHHhh
Q 001400 163 LTLLLGPPSSGKTTLLLALAGR 184 (1085)
Q Consensus 163 ~~~llGp~GsGKSTLL~~L~G~ 184 (1085)
.++|+|++|||||||++.|.|.
T Consensus 15 kI~lvG~~~vGKTsLl~~l~~~ 36 (186)
T d1f6ba_ 15 KLVFLGLDNAGKTTLLHMLKDD 36 (186)
T ss_dssp EEEEEEETTSSHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999764
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=94.35 E-value=0.0064 Score=59.27 Aligned_cols=21 Identities=38% Similarity=0.678 Sum_probs=19.6
Q ss_pred EEEEccCCCChhHHHhhhhCC
Q 001400 858 TALVGVSGAGKTTLMDVLAGR 878 (1085)
Q Consensus 858 ~al~G~nGaGKSTLl~~l~g~ 878 (1085)
+||+|++++|||||++.|+|.
T Consensus 4 VaiiG~~nvGKSSLin~L~~~ 24 (185)
T d1lnza2 4 VGLVGFPSVGKSTLLSVVSSA 24 (185)
T ss_dssp EEEESSTTSSHHHHHHHSEEE
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 799999999999999999874
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.34 E-value=0.0081 Score=58.74 Aligned_cols=21 Identities=38% Similarity=0.548 Sum_probs=19.5
Q ss_pred EEEEEccCCCChhHHHhhhhC
Q 001400 857 LTALVGVSGAGKTTLMDVLAG 877 (1085)
Q Consensus 857 ~~al~G~nGaGKSTLl~~l~g 877 (1085)
++||.|++|||||||.+.|.-
T Consensus 24 iIgI~G~~GSGKSTla~~L~~ 44 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQ 44 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999974
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=94.31 E-value=0.011 Score=63.38 Aligned_cols=26 Identities=31% Similarity=0.301 Sum_probs=23.1
Q ss_pred CeEEEEeCCCCCChhHHHHHHHhhhC
Q 001400 161 SRLTLLLGPPSSGKTTLLLALAGRLG 186 (1085)
Q Consensus 161 G~~~~llGp~GsGKSTLL~~L~G~l~ 186 (1085)
.-.++|.||||||||||++.|...+.
T Consensus 54 ~~~IgitG~pGaGKSTLi~~l~~~~~ 79 (327)
T d2p67a1 54 TLRLGVTGTPGAGKSTFLEAFGMLLI 79 (327)
T ss_dssp SEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred ceEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 56899999999999999999987654
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=94.27 E-value=0.0097 Score=56.89 Aligned_cols=25 Identities=28% Similarity=0.306 Sum_probs=22.0
Q ss_pred CeEEEEEccCCCChhHHHhhhhCCC
Q 001400 855 GVLTALVGVSGAGKTTLMDVLAGRK 879 (1085)
Q Consensus 855 Ge~~al~G~nGaGKSTLl~~l~g~~ 879 (1085)
..++.|.|++||||||+.+.|+...
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l 27 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc
Confidence 4578999999999999999999754
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.25 E-value=0.0082 Score=57.78 Aligned_cols=22 Identities=36% Similarity=0.437 Sum_probs=20.0
Q ss_pred EEEEEccCCCChhHHHhhhhCC
Q 001400 857 LTALVGVSGAGKTTLMDVLAGR 878 (1085)
Q Consensus 857 ~~al~G~nGaGKSTLl~~l~g~ 878 (1085)
.+.|.||+|+|||||++.++..
T Consensus 3 ~v~ItG~~GtGKTtl~~~i~~~ 24 (189)
T d2i3ba1 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 4789999999999999999974
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=94.20 E-value=0.0097 Score=57.11 Aligned_cols=23 Identities=35% Similarity=0.551 Sum_probs=20.0
Q ss_pred EEEEEccCCCChhHHHhhhhCCC
Q 001400 857 LTALVGVSGAGKTTLMDVLAGRK 879 (1085)
Q Consensus 857 ~~al~G~nGaGKSTLl~~l~g~~ 879 (1085)
.++|+|+.|+|||||++.|+|..
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~ 24 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999853
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=94.19 E-value=0.0087 Score=60.09 Aligned_cols=24 Identities=38% Similarity=0.531 Sum_probs=21.7
Q ss_pred EEEEeCCCCCChhHHHHHHHhhhC
Q 001400 163 LTLLLGPPSSGKTTLLLALAGRLG 186 (1085)
Q Consensus 163 ~~~llGp~GsGKSTLL~~L~G~l~ 186 (1085)
+++|-|||||||||..+.|+-.+.
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~lg 28 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKDFG 28 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 467889999999999999998875
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=94.15 E-value=0.011 Score=56.99 Aligned_cols=23 Identities=43% Similarity=0.735 Sum_probs=20.7
Q ss_pred EEEEEccCCCChhHHHhhhhCCC
Q 001400 857 LTALVGVSGAGKTTLMDVLAGRK 879 (1085)
Q Consensus 857 ~~al~G~nGaGKSTLl~~l~g~~ 879 (1085)
.++|+|.+|+|||||++.|+|..
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~~ 29 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQK 29 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 37999999999999999999853
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=94.11 E-value=0.0096 Score=56.70 Aligned_cols=22 Identities=41% Similarity=0.617 Sum_probs=19.8
Q ss_pred EEEEeCCCCCChhHHHHHHHhh
Q 001400 163 LTLLLGPPSSGKTTLLLALAGR 184 (1085)
Q Consensus 163 ~~~llGp~GsGKSTLL~~L~G~ 184 (1085)
.++|+|++|||||||++.|.|.
T Consensus 4 ki~ivG~~~~GKTsLi~~l~~~ 25 (165)
T d1ksha_ 4 RLLMLGLDNAGKTTILKKFNGE 25 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHcCC
Confidence 3789999999999999999874
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=94.05 E-value=0.0048 Score=58.51 Aligned_cols=22 Identities=36% Similarity=0.563 Sum_probs=20.4
Q ss_pred EEEeCCCCCChhHHHHHHHhhh
Q 001400 164 TLLLGPPSSGKTTLLLALAGRL 185 (1085)
Q Consensus 164 ~~llGp~GsGKSTLL~~L~G~l 185 (1085)
++|+|++|+|||||+++|+|.-
T Consensus 3 I~liG~~n~GKSSLin~l~g~~ 24 (160)
T d1xzpa2 3 MVIVGKPNVGKSTLLNRLLNED 24 (160)
T ss_dssp EEEECCHHHHTCHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7899999999999999999863
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=94.04 E-value=0.0097 Score=57.33 Aligned_cols=22 Identities=36% Similarity=0.594 Sum_probs=20.4
Q ss_pred EEEEEccCCCChhHHHhhhhCC
Q 001400 857 LTALVGVSGAGKTTLMDVLAGR 878 (1085)
Q Consensus 857 ~~al~G~nGaGKSTLl~~l~g~ 878 (1085)
+++|+|++|||||||++.|.+.
T Consensus 15 kI~lvG~~~vGKTsLl~~l~~~ 36 (186)
T d1f6ba_ 15 KLVFLGLDNAGKTTLLHMLKDD 36 (186)
T ss_dssp EEEEEEETTSSHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999884
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=94.03 E-value=0.011 Score=57.44 Aligned_cols=25 Identities=28% Similarity=0.577 Sum_probs=21.8
Q ss_pred CeEEEEEccCCCChhHHHhhhhCCC
Q 001400 855 GVLTALVGVSGAGKTTLMDVLAGRK 879 (1085)
Q Consensus 855 Ge~~al~G~nGaGKSTLl~~l~g~~ 879 (1085)
+=.+||+|..|+|||||++.|+|..
T Consensus 8 ~~kV~iiG~~~~GKSTLin~l~~~~ 32 (186)
T d1mkya2 8 AIKVAIVGRPNVGKSTLFNAILNKE 32 (186)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTST
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
Confidence 3468999999999999999999853
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=94.03 E-value=0.011 Score=56.31 Aligned_cols=23 Identities=35% Similarity=0.486 Sum_probs=20.6
Q ss_pred eEEEEEccCCCChhHHHhhhhCC
Q 001400 856 VLTALVGVSGAGKTTLMDVLAGR 878 (1085)
Q Consensus 856 e~~al~G~nGaGKSTLl~~l~g~ 878 (1085)
.++.|.|++||||||+.+.|+..
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~ 25 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQ 25 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999864
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=93.99 E-value=0.02 Score=57.91 Aligned_cols=35 Identities=31% Similarity=0.386 Sum_probs=28.7
Q ss_pred ccc-ceeeEeCCeEEEEeCCCCCChhHHHHHHHhhh
Q 001400 151 LDD-LSGIIRPSRLTLLLGPPSSGKTTLLLALAGRL 185 (1085)
Q Consensus 151 L~~-vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l 185 (1085)
|+. +.|=+++|+++.|.|+||+|||||..-++-..
T Consensus 23 LD~ll~GGl~~G~l~~i~G~~G~GKT~~~l~~a~~~ 58 (258)
T d2i1qa2 23 LDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNL 58 (258)
T ss_dssp HHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred HHHhcCCCccCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 444 34569999999999999999999988887543
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.98 E-value=0.01 Score=58.08 Aligned_cols=21 Identities=38% Similarity=0.596 Sum_probs=18.8
Q ss_pred EEEEccCCCChhHHHhhhhCC
Q 001400 858 TALVGVSGAGKTTLMDVLAGR 878 (1085)
Q Consensus 858 ~al~G~nGaGKSTLl~~l~g~ 878 (1085)
+.|+||||||||||++.|+..
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~ 24 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 689999999999999998753
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.96 E-value=0.012 Score=58.30 Aligned_cols=22 Identities=36% Similarity=0.446 Sum_probs=20.0
Q ss_pred EEEEeCCCCCChhHHHHHHHhh
Q 001400 163 LTLLLGPPSSGKTTLLLALAGR 184 (1085)
Q Consensus 163 ~~~llGp~GsGKSTLL~~L~G~ 184 (1085)
-++|+|++|||||||++.|.+.
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~ 23 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTG 23 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5799999999999999999863
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.95 E-value=0.013 Score=58.38 Aligned_cols=46 Identities=20% Similarity=0.285 Sum_probs=32.1
Q ss_pred EEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCCCceEEEEccCCCCCC
Q 001400 163 LTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVA 222 (1085)
Q Consensus 163 ~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~~~~~~yv~Q~d~~~~ 222 (1085)
+++|-||+|||||||.+.|+-.+.... + . .....+..+++++.+.+
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l~~~~-----~-------~--~~~~~~~vi~~D~yy~~ 49 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLLGQNE-----V-------D--YRQKQVVILSQDSFYRV 49 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTGGG-----S-------C--GGGCSEEEEEGGGGBCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhchhc-----c-------c--cCCCceEEEeccccccc
Confidence 589999999999999999987764310 0 0 01134678888887543
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=93.94 E-value=0.011 Score=57.39 Aligned_cols=21 Identities=33% Similarity=0.294 Sum_probs=19.6
Q ss_pred EEEeCCCCCChhHHHHHHHhh
Q 001400 164 TLLLGPPSSGKTTLLLALAGR 184 (1085)
Q Consensus 164 ~~llGp~GsGKSTLL~~L~G~ 184 (1085)
++|+|++.||||||+++|.|.
T Consensus 8 IaiiG~~naGKSTL~n~L~~~ 28 (179)
T d1wb1a4 8 LGIFGHIDHGKTTLSKVLTEI 28 (179)
T ss_dssp EEEEECTTSSHHHHHHHHHTT
T ss_pred EEEEeCCCCcHHHHHHHHHHh
Confidence 899999999999999999864
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=93.93 E-value=0.014 Score=59.52 Aligned_cols=27 Identities=41% Similarity=0.465 Sum_probs=24.0
Q ss_pred eeEeCCeEEEEeCCCCCChhHHHHHHH
Q 001400 156 GIIRPSRLTLLLGPPSSGKTTLLLALA 182 (1085)
Q Consensus 156 ~~i~~G~~~~llGp~GsGKSTLL~~L~ 182 (1085)
|=+++|+++.|.||||||||||..-++
T Consensus 31 GGlp~G~~~li~G~pGsGKT~~~lq~~ 57 (254)
T d1pzna2 31 GGIETQAITEVFGEFGSGKTQLAHTLA 57 (254)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHH
T ss_pred CCccCCEEEEEEcCCCCCHHHHHHHHH
Confidence 459999999999999999999987664
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=93.93 E-value=0.013 Score=56.68 Aligned_cols=23 Identities=43% Similarity=0.690 Sum_probs=21.2
Q ss_pred EEEEEccCCCChhHHHhhhhCCC
Q 001400 857 LTALVGVSGAGKTTLMDVLAGRK 879 (1085)
Q Consensus 857 ~~al~G~nGaGKSTLl~~l~g~~ 879 (1085)
+++|+|.+|+|||||++.|+|..
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~~ 29 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGVK 29 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999853
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=93.88 E-value=0.011 Score=60.04 Aligned_cols=21 Identities=38% Similarity=0.661 Sum_probs=19.3
Q ss_pred EEEEEccCCCChhHHHhhhhC
Q 001400 857 LTALVGVSGAGKTTLMDVLAG 877 (1085)
Q Consensus 857 ~~al~G~nGaGKSTLl~~l~g 877 (1085)
+++|+|+.|||||||++.|..
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~ 22 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGR 22 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHHH
Confidence 689999999999999999974
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=93.87 E-value=0.013 Score=62.39 Aligned_cols=27 Identities=30% Similarity=0.448 Sum_probs=22.7
Q ss_pred CCeEEEEeCCCCCChhHHHHHHHhhhC
Q 001400 160 PSRLTLLLGPPSSGKTTLLLALAGRLG 186 (1085)
Q Consensus 160 ~G~~~~llGp~GsGKSTLL~~L~G~l~ 186 (1085)
|+.-++++||||+|||.|.++||..+.
T Consensus 48 ~~~~iLl~GPpG~GKT~lAkalA~~~~ 74 (309)
T d1ofha_ 48 TPKNILMIGPTGVGKTEIARRLAKLAN 74 (309)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCceEEEECCCCCCHHHHHHHHhhccc
Confidence 334567899999999999999998864
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=93.87 E-value=0.009 Score=57.89 Aligned_cols=21 Identities=33% Similarity=0.601 Sum_probs=19.9
Q ss_pred EEEEccCCCChhHHHhhhhCC
Q 001400 858 TALVGVSGAGKTTLMDVLAGR 878 (1085)
Q Consensus 858 ~al~G~nGaGKSTLl~~l~g~ 878 (1085)
+||+|.+|+|||||++.|+|.
T Consensus 4 VaivG~~nvGKSTLin~L~~~ 24 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRA 24 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSS
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 799999999999999999984
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=93.85 E-value=0.011 Score=57.03 Aligned_cols=24 Identities=33% Similarity=0.566 Sum_probs=21.0
Q ss_pred eEEEEEccCCCChhHHHhhhhCCC
Q 001400 856 VLTALVGVSGAGKTTLMDVLAGRK 879 (1085)
Q Consensus 856 e~~al~G~nGaGKSTLl~~l~g~~ 879 (1085)
-.++|+|++++|||||++.|.|.+
T Consensus 17 ~~I~lvG~~NvGKSSL~n~L~~~~ 40 (188)
T d1puia_ 17 IEVAFAGRSNAGKSSALNTLTNQK 40 (188)
T ss_dssp EEEEEEECTTSSHHHHHTTTCCC-
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 358999999999999999999854
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=93.82 E-value=0.011 Score=56.17 Aligned_cols=21 Identities=48% Similarity=0.534 Sum_probs=18.9
Q ss_pred EEEEEccCCCChhHHHhhhhC
Q 001400 857 LTALVGVSGAGKTTLMDVLAG 877 (1085)
Q Consensus 857 ~~al~G~nGaGKSTLl~~l~g 877 (1085)
.+.|+|++||||||+.+.|+-
T Consensus 6 ~I~i~G~pGsGKTTia~~La~ 26 (173)
T d1rkba_ 6 NILLTGTPGVGKTTLGKELAS 26 (173)
T ss_dssp CEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 367999999999999999985
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=93.80 E-value=0.038 Score=56.45 Aligned_cols=21 Identities=48% Similarity=0.705 Sum_probs=19.1
Q ss_pred EEEEccCCCChhHHHhhhhCC
Q 001400 858 TALVGVSGAGKTTLMDVLAGR 878 (1085)
Q Consensus 858 ~al~G~nGaGKSTLl~~l~g~ 878 (1085)
+.|.||.|+|||+|.+.|+..
T Consensus 45 iLl~GppGtGKT~la~aia~~ 65 (247)
T d1ixza_ 45 VLLVGPPGVGKTHLARAVAGE 65 (247)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEecCCCCChhHHHHHHHHH
Confidence 579999999999999999963
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=93.76 E-value=0.012 Score=55.30 Aligned_cols=22 Identities=45% Similarity=0.487 Sum_probs=19.4
Q ss_pred EEEEEccCCCChhHHHhhhhCC
Q 001400 857 LTALVGVSGAGKTTLMDVLAGR 878 (1085)
Q Consensus 857 ~~al~G~nGaGKSTLl~~l~g~ 878 (1085)
.+.|+|++||||||+-+.|+-.
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~ 25 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQ 25 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4688899999999999999854
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=93.75 E-value=0.014 Score=59.31 Aligned_cols=23 Identities=57% Similarity=0.860 Sum_probs=21.1
Q ss_pred EEEeCCCCCChhHHHHHHHhhhC
Q 001400 164 TLLLGPPSSGKTTLLLALAGRLG 186 (1085)
Q Consensus 164 ~~llGp~GsGKSTLL~~L~G~l~ 186 (1085)
+++.||||+||||+.+++++.+.
T Consensus 38 ~Ll~GPpG~GKTtla~~la~~~~ 60 (239)
T d1ixsb2 38 LLLFGPPGLGKTTLAHVIAHELG 60 (239)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 67999999999999999998774
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.73 E-value=0.016 Score=59.30 Aligned_cols=25 Identities=48% Similarity=0.731 Sum_probs=22.2
Q ss_pred eEEEEeCCCCCChhHHHHHHHhhhC
Q 001400 162 RLTLLLGPPSSGKTTLLLALAGRLG 186 (1085)
Q Consensus 162 ~~~~llGp~GsGKSTLL~~L~G~l~ 186 (1085)
..++|.||||+||||+.++||..+.
T Consensus 53 ~~lll~GPpG~GKTt~a~~la~~~~ 77 (253)
T d1sxja2 53 RAAMLYGPPGIGKTTAAHLVAQELG 77 (253)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHH
Confidence 4688999999999999999998764
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.71 E-value=0.014 Score=56.72 Aligned_cols=22 Identities=23% Similarity=0.445 Sum_probs=19.8
Q ss_pred eEEEEEccCCCChhHHHhhhhC
Q 001400 856 VLTALVGVSGAGKTTLMDVLAG 877 (1085)
Q Consensus 856 e~~al~G~nGaGKSTLl~~l~g 877 (1085)
..+.|+||||+|||||++-|..
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~ 25 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLIT 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998875
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=93.69 E-value=0.013 Score=56.29 Aligned_cols=22 Identities=27% Similarity=0.489 Sum_probs=19.9
Q ss_pred EEEEeCCCCCChhHHHHHHHhh
Q 001400 163 LTLLLGPPSSGKTTLLLALAGR 184 (1085)
Q Consensus 163 ~~~llGp~GsGKSTLL~~L~G~ 184 (1085)
.++|+|.+|||||||++.|.|.
T Consensus 17 kI~vvG~~~~GKSsLi~rl~~~ 38 (177)
T d1zj6a1 17 KVIIVGLDNAGKTTILYQFSMN 38 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999874
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=93.68 E-value=0.0067 Score=58.76 Aligned_cols=22 Identities=23% Similarity=0.374 Sum_probs=20.3
Q ss_pred EEEEeCCCCCChhHHHHHHHhh
Q 001400 163 LTLLLGPPSSGKTTLLLALAGR 184 (1085)
Q Consensus 163 ~~~llGp~GsGKSTLL~~L~G~ 184 (1085)
.++|+|++++|||||+|+|.|.
T Consensus 18 ~I~lvG~~NvGKSSL~n~L~~~ 39 (188)
T d1puia_ 18 EVAFAGRSNAGKSSALNTLTNQ 39 (188)
T ss_dssp EEEEEECTTSSHHHHHTTTCCC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999874
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.65 E-value=0.041 Score=56.83 Aligned_cols=24 Identities=29% Similarity=0.379 Sum_probs=20.7
Q ss_pred CeEEEEEccCCCChhHHHhhhhCC
Q 001400 855 GVLTALVGVSGAGKTTLMDVLAGR 878 (1085)
Q Consensus 855 Ge~~al~G~nGaGKSTLl~~l~g~ 878 (1085)
..-+-|.||+|+|||+|.+.|++.
T Consensus 41 ~~giLL~Gp~GtGKT~l~~ala~~ 64 (265)
T d1r7ra3 41 SKGVLFYGPPGCGKTLLAKAIANE 64 (265)
T ss_dssp CCEEEEBCCTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcchhHHHHHHHH
Confidence 344779999999999999999974
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.61 E-value=0.0088 Score=58.41 Aligned_cols=25 Identities=44% Similarity=0.509 Sum_probs=22.5
Q ss_pred CCeEEEEEccCCCChhHHHhhhhCC
Q 001400 854 PGVLTALVGVSGAGKTTLMDVLAGR 878 (1085)
Q Consensus 854 ~Ge~~al~G~nGaGKSTLl~~l~g~ 878 (1085)
.|-++.|+|++||||||+-+.|+-.
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~ 42 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEY 42 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999999853
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.61 E-value=0.012 Score=55.16 Aligned_cols=22 Identities=36% Similarity=0.579 Sum_probs=20.2
Q ss_pred EEEEEccCCCChhHHHhhhhCC
Q 001400 857 LTALVGVSGAGKTTLMDVLAGR 878 (1085)
Q Consensus 857 ~~al~G~nGaGKSTLl~~l~g~ 878 (1085)
+++|+|++|+|||||++.|.+.
T Consensus 2 KI~liG~~nvGKSSLln~l~~~ 23 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKND 23 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999974
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=93.59 E-value=0.016 Score=58.88 Aligned_cols=25 Identities=48% Similarity=0.648 Sum_probs=22.3
Q ss_pred EEEEeCCCCCChhHHHHHHHhhhCC
Q 001400 163 LTLLLGPPSSGKTTLLLALAGRLGH 187 (1085)
Q Consensus 163 ~~~llGp~GsGKSTLL~~L~G~l~~ 187 (1085)
-+++.||||+||||+.++|+..+..
T Consensus 37 ~~L~~GPpGtGKT~lA~~la~~~~~ 61 (238)
T d1in4a2 37 HVLLAGPPGLGKTTLAHIIASELQT 61 (238)
T ss_dssp CEEEESSTTSSHHHHHHHHHHHHTC
T ss_pred eEEEECCCCCcHHHHHHHHHhccCC
Confidence 3789999999999999999988754
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=93.58 E-value=0.015 Score=56.05 Aligned_cols=22 Identities=27% Similarity=0.428 Sum_probs=20.2
Q ss_pred eEEEEEccCCCChhHHHhhhhC
Q 001400 856 VLTALVGVSGAGKTTLMDVLAG 877 (1085)
Q Consensus 856 e~~al~G~nGaGKSTLl~~l~g 877 (1085)
.+++|.|+.||||||+.+.|+-
T Consensus 2 kiI~i~G~~GsGKsT~~~~L~~ 23 (190)
T d1khta_ 2 KVVVVTGVPGVGSTTSSQLAMD 23 (190)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999975
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=93.57 E-value=0.013 Score=60.01 Aligned_cols=27 Identities=44% Similarity=0.588 Sum_probs=23.0
Q ss_pred CCeEEEEeCCCCCChhHHHHHHHhhhC
Q 001400 160 PSRLTLLLGPPSSGKTTLLLALAGRLG 186 (1085)
Q Consensus 160 ~G~~~~llGp~GsGKSTLL~~L~G~l~ 186 (1085)
|-.-+++.||||+|||++.++||..+.
T Consensus 39 p~~~vLL~GppGtGKT~la~alA~~~~ 65 (246)
T d1d2na_ 39 PLVSVLLEGPPHSGKTALAAKIAEESN 65 (246)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEECcCCCCHHHHHHHHhhccc
Confidence 334578999999999999999998764
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=93.52 E-value=0.019 Score=59.22 Aligned_cols=28 Identities=39% Similarity=0.656 Sum_probs=23.9
Q ss_pred eCCeEEEEeCCCCCChhHHHHHHHhhhC
Q 001400 159 RPSRLTLLLGPPSSGKTTLLLALAGRLG 186 (1085)
Q Consensus 159 ~~G~~~~llGp~GsGKSTLL~~L~G~l~ 186 (1085)
++..-+++.||||+|||++.++||..+.
T Consensus 43 ~~~~~iLL~GppGtGKT~la~~iA~~~~ 70 (256)
T d1lv7a_ 43 KIPKGVLMVGPPGTGKTLLAKAIAGEAK 70 (256)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCCeEEeeCCCCCCccHHHHHHHHHcC
Confidence 3445688999999999999999998774
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.51 E-value=0.018 Score=58.57 Aligned_cols=28 Identities=32% Similarity=0.310 Sum_probs=25.6
Q ss_pred eeEeCCeEEEEeCCCCCChhHHHHHHHh
Q 001400 156 GIIRPSRLTLLLGPPSSGKTTLLLALAG 183 (1085)
Q Consensus 156 ~~i~~G~~~~llGp~GsGKSTLL~~L~G 183 (1085)
|=+++|+++.|.||||||||||...++.
T Consensus 32 GGip~G~~~~i~G~~GsGKT~lalq~~~ 59 (258)
T d1v5wa_ 32 GGIESMAITEAFGEFRTGKTQLSHTLCV 59 (258)
T ss_dssp SSBCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred CCCcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 5699999999999999999999888874
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.45 E-value=0.014 Score=57.22 Aligned_cols=20 Identities=50% Similarity=0.654 Sum_probs=18.2
Q ss_pred EEEEccCCCChhHHHhhhhC
Q 001400 858 TALVGVSGAGKTTLMDVLAG 877 (1085)
Q Consensus 858 ~al~G~nGaGKSTLl~~l~g 877 (1085)
+.|+||||||||||++.|+.
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~ 22 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQ 22 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 67999999999999999864
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=93.41 E-value=0.014 Score=60.22 Aligned_cols=22 Identities=23% Similarity=0.469 Sum_probs=20.5
Q ss_pred EEEEeCCCCCChhHHHHHHHhh
Q 001400 163 LTLLLGPPSSGKTTLLLALAGR 184 (1085)
Q Consensus 163 ~~~llGp~GsGKSTLL~~L~G~ 184 (1085)
.++|+|.+|+|||||+|+|.|.
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~ 55 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGE 55 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 4899999999999999999986
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=93.41 E-value=0.024 Score=60.44 Aligned_cols=25 Identities=32% Similarity=0.345 Sum_probs=22.2
Q ss_pred CeEEEEeCCCCCChhHHHHHHHhhh
Q 001400 161 SRLTLLLGPPSSGKTTLLLALAGRL 185 (1085)
Q Consensus 161 G~~~~llGp~GsGKSTLL~~L~G~l 185 (1085)
.-.++|.||||||||||+..|...+
T Consensus 51 ~~~igitG~pGaGKSTli~~l~~~~ 75 (323)
T d2qm8a1 51 AIRVGITGVPGVGKSTTIDALGSLL 75 (323)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceEEeeeCCCCCCHHHHHHHHHHHH
Confidence 4679999999999999999998654
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=93.39 E-value=0.017 Score=58.26 Aligned_cols=22 Identities=59% Similarity=0.807 Sum_probs=20.5
Q ss_pred EEEeCCCCCChhHHHHHHHhhh
Q 001400 164 TLLLGPPSSGKTTLLLALAGRL 185 (1085)
Q Consensus 164 ~~llGp~GsGKSTLL~~L~G~l 185 (1085)
++|.||||+||||+.++|+..+
T Consensus 48 lll~Gp~G~GKTtla~~iak~l 69 (231)
T d1iqpa2 48 LLFAGPPGVGKTTAALALAREL 69 (231)
T ss_dssp EEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHH
Confidence 7899999999999999999876
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.32 E-value=0.019 Score=59.53 Aligned_cols=29 Identities=41% Similarity=0.647 Sum_probs=24.7
Q ss_pred EeCCeEEEEeCCCCCChhHHHHHHHhhhC
Q 001400 158 IRPSRLTLLLGPPSSGKTTLLLALAGRLG 186 (1085)
Q Consensus 158 i~~G~~~~llGp~GsGKSTLL~~L~G~l~ 186 (1085)
+++..-++|.||||+|||+|.++||+.+.
T Consensus 38 ~~~~~giLL~Gp~GtGKT~l~~ala~~~~ 66 (265)
T d1r7ra3 38 MTPSKGVLFYGPPGCGKTLLAKAIANECQ 66 (265)
T ss_dssp CCCCCEEEEBCCTTSSHHHHHHHHHHHTT
T ss_pred CCCCCeEEEECCCCCcchhHHHHHHHHhC
Confidence 44555689999999999999999999874
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=93.29 E-value=0.022 Score=56.73 Aligned_cols=27 Identities=33% Similarity=0.414 Sum_probs=24.2
Q ss_pred eCCeEEEEeCCCCCChhHHHHHHHhhh
Q 001400 159 RPSRLTLLLGPPSSGKTTLLLALAGRL 185 (1085)
Q Consensus 159 ~~G~~~~llGp~GsGKSTLL~~L~G~l 185 (1085)
+.|.++.+.|.||||||||.+.|+-++
T Consensus 22 ~kg~vIwltGlsGsGKTTia~~L~~~l 48 (208)
T d1m7ga_ 22 QRGLTIWLTGLSASGKSTLAVELEHQL 48 (208)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 467899999999999999999998665
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.22 E-value=0.017 Score=57.49 Aligned_cols=21 Identities=19% Similarity=0.393 Sum_probs=19.2
Q ss_pred EEEEEccCCCChhHHHhhhhC
Q 001400 857 LTALVGVSGAGKTTLMDVLAG 877 (1085)
Q Consensus 857 ~~al~G~nGaGKSTLl~~l~g 877 (1085)
++||.|++|||||||.+.|+-
T Consensus 4 iIgI~G~~gSGKSTla~~L~~ 24 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQ 24 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998874
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.22 E-value=0.02 Score=57.06 Aligned_cols=28 Identities=32% Similarity=0.325 Sum_probs=25.2
Q ss_pred eCCeEEEEeCCCCCChhHHHHHHHhhhC
Q 001400 159 RPSRLTLLLGPPSSGKTTLLLALAGRLG 186 (1085)
Q Consensus 159 ~~G~~~~llGp~GsGKSTLL~~L~G~l~ 186 (1085)
+.|.+++|-|+.||||||+.+.|+..+.
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L~ 28 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEALC 28 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4789999999999999999999988764
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=93.20 E-value=0.016 Score=54.33 Aligned_cols=22 Identities=36% Similarity=0.427 Sum_probs=19.8
Q ss_pred EEEEEccCCCChhHHHhhhhCC
Q 001400 857 LTALVGVSGAGKTTLMDVLAGR 878 (1085)
Q Consensus 857 ~~al~G~nGaGKSTLl~~l~g~ 878 (1085)
++.|+|+.|+|||||++.|.+.
T Consensus 2 kivlvG~~~vGKSsLi~~l~~~ 23 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLKLG 23 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999863
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=93.17 E-value=0.023 Score=56.38 Aligned_cols=27 Identities=30% Similarity=0.404 Sum_probs=23.1
Q ss_pred CCeEEEEeCCCCCChhHHHHHHHhhhC
Q 001400 160 PSRLTLLLGPPSSGKTTLLLALAGRLG 186 (1085)
Q Consensus 160 ~G~~~~llGp~GsGKSTLL~~L~G~l~ 186 (1085)
.+.+++++||+|+||||.+-=||-++.
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~~~~ 31 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGRYYQ 31 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 467899999999999999888887653
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.13 E-value=0.016 Score=57.28 Aligned_cols=23 Identities=26% Similarity=0.459 Sum_probs=21.0
Q ss_pred EEEEEccCCCChhHHHhhhhCCC
Q 001400 857 LTALVGVSGAGKTTLMDVLAGRK 879 (1085)
Q Consensus 857 ~~al~G~nGaGKSTLl~~l~g~~ 879 (1085)
.++|+|+.|||||||++.|.|..
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~~ 27 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTDS 27 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999854
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=93.03 E-value=0.017 Score=54.47 Aligned_cols=22 Identities=36% Similarity=0.510 Sum_probs=20.1
Q ss_pred EEEEEccCCCChhHHHhhhhCC
Q 001400 857 LTALVGVSGAGKTTLMDVLAGR 878 (1085)
Q Consensus 857 ~~al~G~nGaGKSTLl~~l~g~ 878 (1085)
.++|+|.+|+|||||++.+.+.
T Consensus 7 kI~ivG~~~vGKSSLi~~~~~~ 28 (169)
T d1upta_ 7 RILILGLDGAGKTTILYRLQVG 28 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999874
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=93.02 E-value=0.021 Score=54.22 Aligned_cols=20 Identities=40% Similarity=0.483 Sum_probs=18.3
Q ss_pred EEEeCCCCCChhHHHHHHHh
Q 001400 164 TLLLGPPSSGKTTLLLALAG 183 (1085)
Q Consensus 164 ~~llGp~GsGKSTLL~~L~G 183 (1085)
++++|++|+|||||++.+.+
T Consensus 5 i~i~G~~~~GKTsLl~~l~~ 24 (164)
T d1zd9a1 5 LTLVGLQYSGKTTFVNVIAS 24 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 67999999999999999975
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=93.00 E-value=0.021 Score=58.94 Aligned_cols=23 Identities=22% Similarity=0.556 Sum_probs=20.9
Q ss_pred EEEEEccCCCChhHHHhhhhCCC
Q 001400 857 LTALVGVSGAGKTTLMDVLAGRK 879 (1085)
Q Consensus 857 ~~al~G~nGaGKSTLl~~l~g~~ 879 (1085)
.++|+|.+|+|||||+|.|.|..
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~~ 56 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGER 56 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47999999999999999999953
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=92.96 E-value=0.025 Score=57.97 Aligned_cols=24 Identities=50% Similarity=0.703 Sum_probs=21.5
Q ss_pred EEEEeCCCCCChhHHHHHHHhhhC
Q 001400 163 LTLLLGPPSSGKTTLLLALAGRLG 186 (1085)
Q Consensus 163 ~~~llGp~GsGKSTLL~~L~G~l~ 186 (1085)
-+++.||||+|||+|.++|+..+.
T Consensus 44 giLl~GppGtGKT~la~aia~~~~ 67 (247)
T d1ixza_ 44 GVLLVGPPGVGKTHLARAVAGEAR 67 (247)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTT
T ss_pred eEEEecCCCCChhHHHHHHHHHcC
Confidence 479999999999999999998763
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=92.90 E-value=0.021 Score=55.99 Aligned_cols=25 Identities=32% Similarity=0.236 Sum_probs=22.4
Q ss_pred eEEEEeCCCCCChhHHHHHHHhhhC
Q 001400 162 RLTLLLGPPSSGKTTLLLALAGRLG 186 (1085)
Q Consensus 162 ~~~~llGp~GsGKSTLL~~L~G~l~ 186 (1085)
-+++|-|+.||||||+++.|+..++
T Consensus 10 ~~I~ieG~~GsGKTTl~~~L~~~l~ 34 (197)
T d2vp4a1 10 FTVLIEGNIGSGKTTYLNHFEKYKN 34 (197)
T ss_dssp EEEEEECSTTSCHHHHHHTTGGGTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4899999999999999999987663
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.89 E-value=0.025 Score=55.75 Aligned_cols=28 Identities=32% Similarity=0.496 Sum_probs=24.7
Q ss_pred EEEeCCeEEEEEccCCCChhHHHhhhhC
Q 001400 850 GAFRPGVLTALVGVSGAGKTTLMDVLAG 877 (1085)
Q Consensus 850 ~~i~~Ge~~al~G~nGaGKSTLl~~l~g 877 (1085)
+-+++|+++.|.|++|+|||||..-++.
T Consensus 18 GGi~~G~v~~i~G~~GsGKT~l~l~la~ 45 (242)
T d1n0wa_ 18 GGIETGSITEMFGEFRTGKTQICHTLAV 45 (242)
T ss_dssp TSEETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcCCEEEEEEeCCCCCHHHHHHHHHH
Confidence 3578999999999999999999877764
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=92.87 E-value=0.024 Score=56.28 Aligned_cols=27 Identities=26% Similarity=0.287 Sum_probs=24.6
Q ss_pred CCeEEEEeCCCCCChhHHHHHHHhhhC
Q 001400 160 PSRLTLLLGPPSSGKTTLLLALAGRLG 186 (1085)
Q Consensus 160 ~G~~~~llGp~GsGKSTLL~~L~G~l~ 186 (1085)
.|.+++|-|+.||||||+.+.|+..+.
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~L~ 27 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVETLE 27 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 488999999999999999999998764
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=92.70 E-value=0.025 Score=55.31 Aligned_cols=23 Identities=22% Similarity=0.274 Sum_probs=20.8
Q ss_pred CeEEEEEccCCCChhHHHhhhhC
Q 001400 855 GVLTALVGVSGAGKTTLMDVLAG 877 (1085)
Q Consensus 855 Ge~~al~G~nGaGKSTLl~~l~g 877 (1085)
..++.|+||.||||||+.+.|+-
T Consensus 6 p~iI~i~G~pGSGKsT~a~~La~ 28 (194)
T d1qf9a_ 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45889999999999999999984
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=92.66 E-value=0.025 Score=53.57 Aligned_cols=22 Identities=32% Similarity=0.599 Sum_probs=20.3
Q ss_pred EEEEEccCCCChhHHHhhhhCC
Q 001400 857 LTALVGVSGAGKTTLMDVLAGR 878 (1085)
Q Consensus 857 ~~al~G~nGaGKSTLl~~l~g~ 878 (1085)
+++|+|+.|+|||||++.|.+.
T Consensus 4 ki~ivG~~~~GKTsLi~~l~~~ 25 (165)
T d1ksha_ 4 RLLMLGLDNAGKTTILKKFNGE 25 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHcCC
Confidence 5789999999999999999984
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=92.64 E-value=0.022 Score=54.06 Aligned_cols=21 Identities=38% Similarity=0.627 Sum_probs=19.0
Q ss_pred EEEEccCCCChhHHHhhhhCC
Q 001400 858 TALVGVSGAGKTTLMDVLAGR 878 (1085)
Q Consensus 858 ~al~G~nGaGKSTLl~~l~g~ 878 (1085)
+.|+|++||||||+-+.|+..
T Consensus 3 I~liG~~GsGKsTi~k~La~~ 23 (161)
T d1viaa_ 3 IVFIGFMGSGKSTLARALAKD 23 (161)
T ss_dssp EEEECCTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 678999999999999999853
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=92.62 E-value=0.14 Score=52.58 Aligned_cols=28 Identities=29% Similarity=0.425 Sum_probs=24.5
Q ss_pred EEEeCCeEEEEEccCCCChhHHHhhhhC
Q 001400 850 GAFRPGVLTALVGVSGAGKTTLMDVLAG 877 (1085)
Q Consensus 850 ~~i~~Ge~~al~G~nGaGKSTLl~~l~g 877 (1085)
+-+++|.++-|.|++|+|||||.-.++.
T Consensus 49 GGi~~g~itei~G~~gsGKTtl~l~~~~ 76 (263)
T d1u94a1 49 GGLPMGRIVEIYGPESSGKTTLTLQVIA 76 (263)
T ss_dssp SSEETTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCccCceEEEEecCCCcHHHHHHHHHHH
Confidence 4578999999999999999999876664
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=92.60 E-value=0.027 Score=56.85 Aligned_cols=23 Identities=39% Similarity=0.521 Sum_probs=20.8
Q ss_pred EEEEeCCCCCChhHHHHHHHhhh
Q 001400 163 LTLLLGPPSSGKTTLLLALAGRL 185 (1085)
Q Consensus 163 ~~~llGp~GsGKSTLL~~L~G~l 185 (1085)
+++|+|++.||||||+++|.+..
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~~~ 29 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRGSA 29 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEEeCCCccHHHHHHHHHhhc
Confidence 48999999999999999998753
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.55 E-value=0.03 Score=57.67 Aligned_cols=24 Identities=46% Similarity=0.692 Sum_probs=21.4
Q ss_pred EEEEeCCCCCChhHHHHHHHhhhC
Q 001400 163 LTLLLGPPSSGKTTLLLALAGRLG 186 (1085)
Q Consensus 163 ~~~llGp~GsGKSTLL~~L~G~l~ 186 (1085)
=+++.||||+|||+|.++++....
T Consensus 40 giLL~GppGtGKT~l~~ala~~~~ 63 (258)
T d1e32a2 40 GILLYGPPGTGKTLIARAVANETG 63 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTT
T ss_pred eeEEecCCCCCchHHHHHHHHHhC
Confidence 378999999999999999998763
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=92.55 E-value=0.027 Score=53.79 Aligned_cols=21 Identities=38% Similarity=0.631 Sum_probs=19.1
Q ss_pred EEEeCCCCCChhHHHHHHHhh
Q 001400 164 TLLLGPPSSGKTTLLLALAGR 184 (1085)
Q Consensus 164 ~~llGp~GsGKSTLL~~L~G~ 184 (1085)
++++|++|+|||||++.+.+.
T Consensus 8 i~vvG~~~vGKTsLi~~l~~~ 28 (169)
T d3raba_ 8 ILIIGNSSVGKTSFLFRYADD 28 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHcC
Confidence 789999999999999998753
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=92.54 E-value=0.024 Score=55.27 Aligned_cols=20 Identities=30% Similarity=0.341 Sum_probs=18.7
Q ss_pred EEEEeCCCCCChhHHHHHHH
Q 001400 163 LTLLLGPPSSGKTTLLLALA 182 (1085)
Q Consensus 163 ~~~llGp~GsGKSTLL~~L~ 182 (1085)
+++|.|++||||||+.+.|.
T Consensus 5 IIgitG~~gSGKstva~~l~ 24 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLR 24 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68899999999999999995
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.44 E-value=0.028 Score=53.78 Aligned_cols=21 Identities=29% Similarity=0.534 Sum_probs=19.1
Q ss_pred EEEeCCCCCChhHHHHHHHhh
Q 001400 164 TLLLGPPSSGKTTLLLALAGR 184 (1085)
Q Consensus 164 ~~llGp~GsGKSTLL~~L~G~ 184 (1085)
++|+|++|+|||||++.+.+.
T Consensus 5 i~~vG~~~vGKSsLi~~~~~~ 25 (175)
T d1ky3a_ 5 VIILGDSGVGKTSLMHRYVND 25 (175)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHcC
Confidence 789999999999999998753
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=92.42 E-value=0.0093 Score=56.37 Aligned_cols=22 Identities=32% Similarity=0.511 Sum_probs=20.4
Q ss_pred EEEEEccCCCChhHHHhhhhCC
Q 001400 857 LTALVGVSGAGKTTLMDVLAGR 878 (1085)
Q Consensus 857 ~~al~G~nGaGKSTLl~~l~g~ 878 (1085)
.++|+|..|+|||||++.|+|.
T Consensus 2 kI~liG~~n~GKSSLin~l~g~ 23 (160)
T d1xzpa2 2 RMVIVGKPNVGKSTLLNRLLNE 23 (160)
T ss_dssp EEEEECCHHHHTCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5799999999999999999984
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=92.38 E-value=0.035 Score=54.99 Aligned_cols=26 Identities=38% Similarity=0.321 Sum_probs=22.6
Q ss_pred CeEEEEeCCCCCChhHHHHHHHhhhC
Q 001400 161 SRLTLLLGPPSSGKTTLLLALAGRLG 186 (1085)
Q Consensus 161 G~~~~llGp~GsGKSTLL~~L~G~l~ 186 (1085)
..+++++||+|+||||.+--||-++.
T Consensus 10 ~~vi~lvGp~GvGKTTTiaKLA~~~~ 35 (207)
T d1ls1a2 10 RNLWFLVGLQGSGKTTTAAKLALYYK 35 (207)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 46889999999999999999987663
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=92.33 E-value=0.037 Score=61.57 Aligned_cols=45 Identities=27% Similarity=0.372 Sum_probs=31.0
Q ss_pred EEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCCCceEEEEccCC
Q 001400 163 LTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQD 218 (1085)
Q Consensus 163 ~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~~~~~~yv~Q~d 218 (1085)
=++++||+|||||-|.+.||+.+.- + -+..++..++ .+|||-.+-
T Consensus 51 NILliGPTGvGKTlLAr~LAk~l~V--P---Fv~~daT~fT------eaGYvG~DV 95 (443)
T d1g41a_ 51 NILMIGPTGVGKTEIARRLAKLANA--P---FIKVEATKFT------EVGYVGKEV 95 (443)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTTC--C---EEEEEGGGGC----------CCCCT
T ss_pred cEEEECCCCCCHHHHHHHHHHHhCC--C---EEEeecceee------ecceeecch
Confidence 5789999999999999999998742 2 3555554443 378988864
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=92.32 E-value=0.034 Score=56.91 Aligned_cols=27 Identities=33% Similarity=0.330 Sum_probs=23.7
Q ss_pred CeEEEEeCCCCCChhHHHHHHHhhhCC
Q 001400 161 SRLTLLLGPPSSGKTTLLLALAGRLGH 187 (1085)
Q Consensus 161 G~~~~llGp~GsGKSTLL~~L~G~l~~ 187 (1085)
...++|.||+|+||||+++.|+..+..
T Consensus 43 ~~~lll~GppGtGKT~l~~~l~~~l~~ 69 (276)
T d1fnna2 43 YPRATLLGRPGTGKTVTLRKLWELYKD 69 (276)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHhc
Confidence 347899999999999999999988754
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=92.26 E-value=0.022 Score=54.55 Aligned_cols=21 Identities=57% Similarity=0.668 Sum_probs=19.0
Q ss_pred EEEEeCCCCCChhHHHHHHHh
Q 001400 163 LTLLLGPPSSGKTTLLLALAG 183 (1085)
Q Consensus 163 ~~~llGp~GsGKSTLL~~L~G 183 (1085)
.++++|++|+|||||++.|.+
T Consensus 18 kI~vvG~~~vGKSsLi~~l~~ 38 (176)
T d1fzqa_ 18 RILLLGLDNAGKTTLLKQLAS 38 (176)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 478999999999999999965
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=92.24 E-value=0.027 Score=54.44 Aligned_cols=21 Identities=38% Similarity=0.428 Sum_probs=19.8
Q ss_pred EEEEccCCCChhHHHhhhhCC
Q 001400 858 TALVGVSGAGKTTLMDVLAGR 878 (1085)
Q Consensus 858 ~al~G~nGaGKSTLl~~l~g~ 878 (1085)
+||+|...||||||++.|+|.
T Consensus 8 IaiiG~~naGKSTL~n~L~~~ 28 (179)
T d1wb1a4 8 LGIFGHIDHGKTTLSKVLTEI 28 (179)
T ss_dssp EEEEECTTSSHHHHHHHHHTT
T ss_pred EEEEeCCCCcHHHHHHHHHHh
Confidence 899999999999999999974
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.23 E-value=0.023 Score=57.42 Aligned_cols=27 Identities=19% Similarity=0.155 Sum_probs=24.3
Q ss_pred CCeEEEEeCCCCCChhHHHHHHHhhhC
Q 001400 160 PSRLTLLLGPPSSGKTTLLLALAGRLG 186 (1085)
Q Consensus 160 ~G~~~~llGp~GsGKSTLL~~L~G~l~ 186 (1085)
++++++|-|+-||||||+++.|+..+.
T Consensus 1 ~~k~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 1 RIKKISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 367899999999999999999998774
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.22 E-value=0.031 Score=56.35 Aligned_cols=22 Identities=50% Similarity=0.889 Sum_probs=20.3
Q ss_pred EEEeCCCCCChhHHHHHHHhhh
Q 001400 164 TLLLGPPSSGKTTLLLALAGRL 185 (1085)
Q Consensus 164 ~~llGp~GsGKSTLL~~L~G~l 185 (1085)
+.+-||+|+||||+.++++..+
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~l 57 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKEL 57 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHHH
Confidence 6899999999999999999875
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=92.19 E-value=0.033 Score=57.15 Aligned_cols=27 Identities=26% Similarity=0.428 Sum_probs=23.2
Q ss_pred CCeEEEEeCCCCCChhHHHHHHHhhhC
Q 001400 160 PSRLTLLLGPPSSGKTTLLLALAGRLG 186 (1085)
Q Consensus 160 ~G~~~~llGp~GsGKSTLL~~L~G~l~ 186 (1085)
.++.++|.||+|+|||||++.++-..+
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~~~~ 54 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGINELN 54 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred cCCEEEEEcCCCCcHHHHHHHHHHHCC
Confidence 457899999999999999999886654
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.18 E-value=0.032 Score=52.89 Aligned_cols=20 Identities=15% Similarity=0.411 Sum_probs=18.2
Q ss_pred EEEeCCCCCChhHHHHHHHh
Q 001400 164 TLLLGPPSSGKTTLLLALAG 183 (1085)
Q Consensus 164 ~~llGp~GsGKSTLL~~L~G 183 (1085)
++|+|++|+|||||++.+.+
T Consensus 5 v~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 5 MVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999998874
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=92.17 E-value=0.024 Score=60.81 Aligned_cols=25 Identities=36% Similarity=0.433 Sum_probs=23.2
Q ss_pred EEEEeCCCCCChhHHHHHHHhhhCC
Q 001400 163 LTLLLGPPSSGKTTLLLALAGRLGH 187 (1085)
Q Consensus 163 ~~~llGp~GsGKSTLL~~L~G~l~~ 187 (1085)
-++|.||||+|||||++.|++.+++
T Consensus 30 ~vLl~G~pG~GKT~lar~~~~iLp~ 54 (333)
T d1g8pa_ 30 GVLVFGDRGTGKSTAVRALAALLPE 54 (333)
T ss_dssp CEEEECCGGGCTTHHHHHHHHHSCC
T ss_pred eEEEECCCCccHHHHHHHHHHhCCC
Confidence 5799999999999999999999875
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.13 E-value=0.03 Score=53.24 Aligned_cols=21 Identities=24% Similarity=0.453 Sum_probs=19.2
Q ss_pred EEEeCCCCCChhHHHHHHHhh
Q 001400 164 TLLLGPPSSGKTTLLLALAGR 184 (1085)
Q Consensus 164 ~~llGp~GsGKSTLL~~L~G~ 184 (1085)
++|+|++|+|||||++.+.+.
T Consensus 6 i~viG~~~vGKTsli~~l~~~ 26 (166)
T d1ctqa_ 6 LVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 799999999999999998764
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.09 E-value=0.033 Score=53.45 Aligned_cols=21 Identities=29% Similarity=0.529 Sum_probs=19.0
Q ss_pred EEEeCCCCCChhHHHHHHHhh
Q 001400 164 TLLLGPPSSGKTTLLLALAGR 184 (1085)
Q Consensus 164 ~~llGp~GsGKSTLL~~L~G~ 184 (1085)
++|+|++|+|||||++.+.+.
T Consensus 7 i~vvG~~~vGKTsLi~~~~~~ 27 (175)
T d2f9la1 7 VVLIGDSGVGKSNLLSRFTRN 27 (175)
T ss_dssp EEEESSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999988753
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=92.08 E-value=0.032 Score=54.27 Aligned_cols=25 Identities=44% Similarity=0.518 Sum_probs=22.3
Q ss_pred eCCeEEEEEccCCCChhHHHhhhhC
Q 001400 853 RPGVLTALVGVSGAGKTTLMDVLAG 877 (1085)
Q Consensus 853 ~~Ge~~al~G~nGaGKSTLl~~l~g 877 (1085)
++|-.+.|+||.||||||+-+.|+-
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~ 25 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAK 25 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHHH
Confidence 3577889999999999999999994
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=91.94 E-value=0.056 Score=50.82 Aligned_cols=30 Identities=30% Similarity=0.419 Sum_probs=26.4
Q ss_pred EeCCeEEEEeCCCCCChhHHHHHHHhhhCC
Q 001400 158 IRPSRLTLLLGPPSSGKTTLLLALAGRLGH 187 (1085)
Q Consensus 158 i~~G~~~~llGp~GsGKSTLL~~L~G~l~~ 187 (1085)
.+||.+++|-|+=|||||||.+.++.-+..
T Consensus 30 ~~~g~ii~L~G~LGaGKTtfvr~~~~~lg~ 59 (158)
T d1htwa_ 30 TEKAIMVYLNGDLGAGKTTLTRGMLQGIGH 59 (158)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred CCCCeEEEEecCCCccHHHHHHHHHhhccc
Confidence 468999999999999999999999876643
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=91.94 E-value=0.031 Score=53.46 Aligned_cols=20 Identities=40% Similarity=0.478 Sum_probs=18.3
Q ss_pred EEEEccCCCChhHHHhhhhC
Q 001400 858 TALVGVSGAGKTTLMDVLAG 877 (1085)
Q Consensus 858 ~al~G~nGaGKSTLl~~l~g 877 (1085)
+.|+|++||||||+-+.|+-
T Consensus 5 Iil~G~~GsGKSTia~~LA~ 24 (170)
T d1e6ca_ 5 IFMVGARGCGMTTVGRELAR 24 (170)
T ss_dssp EEEESCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999985
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=91.93 E-value=0.05 Score=54.04 Aligned_cols=26 Identities=31% Similarity=0.388 Sum_probs=22.1
Q ss_pred CCeEEEEeCCCCCChhHHHHHHHhhh
Q 001400 160 PSRLTLLLGPPSSGKTTLLLALAGRL 185 (1085)
Q Consensus 160 ~G~~~~llGp~GsGKSTLL~~L~G~l 185 (1085)
+-.+++++||+|+||||.+-=||-++
T Consensus 10 ~p~vi~lvGptGvGKTTTiAKLAa~~ 35 (213)
T d1vmaa2 10 PPFVIMVVGVNGTGKTTSCGKLAKMF 35 (213)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 44588999999999999988888765
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=91.92 E-value=0.033 Score=53.64 Aligned_cols=22 Identities=23% Similarity=0.517 Sum_probs=19.5
Q ss_pred EEEEEccCCCChhHHHhhhhCC
Q 001400 857 LTALVGVSGAGKTTLMDVLAGR 878 (1085)
Q Consensus 857 ~~al~G~nGaGKSTLl~~l~g~ 878 (1085)
++.|.|++||||||+.+.|+..
T Consensus 3 iivi~G~~GsGKTT~~~~La~~ 24 (194)
T d1nksa_ 3 IGIVTGIPGVGKSTVLAKVKEI 24 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5678899999999999999864
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.89 E-value=0.035 Score=53.34 Aligned_cols=24 Identities=29% Similarity=0.372 Sum_probs=20.9
Q ss_pred CCeEEEEEccCCCChhHHHhhhhC
Q 001400 854 PGVLTALVGVSGAGKTTLMDVLAG 877 (1085)
Q Consensus 854 ~Ge~~al~G~nGaGKSTLl~~l~g 877 (1085)
+-+++.++|++||||||+.+-++.
T Consensus 13 ~p~liil~G~pGsGKST~a~~l~~ 36 (172)
T d1yj5a2 13 NPEVVVAVGFPGAGKSTFIQEHLV 36 (172)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHTG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999988863
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=91.88 E-value=0.027 Score=60.04 Aligned_cols=30 Identities=23% Similarity=0.297 Sum_probs=25.1
Q ss_pred EEeCCeEEEEEccCCCChhHHHhhhhCCCC
Q 001400 851 AFRPGVLTALVGVSGAGKTTLMDVLAGRKT 880 (1085)
Q Consensus 851 ~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~ 880 (1085)
.++.|.-+.|.|++||||||||+.|++..+
T Consensus 162 ~v~~~~nili~G~tgSGKTT~l~al~~~i~ 191 (323)
T d1g6oa_ 162 GIAIGKNVIVCGGTGSGKTTYIKSIMEFIP 191 (323)
T ss_dssp HHHHTCCEEEEESTTSSHHHHHHHHGGGSC
T ss_pred HHHhCCCEEEEeeccccchHHHHHHhhhcc
Confidence 345566789999999999999999998654
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.87 E-value=0.031 Score=56.08 Aligned_cols=23 Identities=39% Similarity=0.456 Sum_probs=20.6
Q ss_pred EEEeCCCCCChhHHHHHHHhhhC
Q 001400 164 TLLLGPPSSGKTTLLLALAGRLG 186 (1085)
Q Consensus 164 ~~llGp~GsGKSTLL~~L~G~l~ 186 (1085)
+++-||+|+||||+.++|+..+.
T Consensus 39 ~ll~Gp~G~GKTt~a~~la~~l~ 61 (224)
T d1sxjb2 39 MIISGMPGIGKTTSVHCLAHELL 61 (224)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCchhhHHHHHHHHh
Confidence 67899999999999999997764
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=91.85 E-value=0.035 Score=53.05 Aligned_cols=23 Identities=30% Similarity=0.468 Sum_probs=20.9
Q ss_pred EEEEEccCCCChhHHHhhhhCCC
Q 001400 857 LTALVGVSGAGKTTLMDVLAGRK 879 (1085)
Q Consensus 857 ~~al~G~nGaGKSTLl~~l~g~~ 879 (1085)
.++|+|..|||||||++.|.+..
T Consensus 17 kI~vvG~~~~GKSsLi~rl~~~~ 39 (177)
T d1zj6a1 17 KVIIVGLDNAGKTTILYQFSMNE 39 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 67899999999999999999854
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.80 E-value=0.034 Score=54.38 Aligned_cols=23 Identities=30% Similarity=0.343 Sum_probs=20.7
Q ss_pred CeEEEEEccCCCChhHHHhhhhC
Q 001400 855 GVLTALVGVSGAGKTTLMDVLAG 877 (1085)
Q Consensus 855 Ge~~al~G~nGaGKSTLl~~l~g 877 (1085)
-.++.|+||.||||||+.+.|+.
T Consensus 8 ~~iI~i~GppGSGKsT~a~~La~ 30 (196)
T d1ukza_ 8 VSVIFVLGGPGAGKGTQCEKLVK 30 (196)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 34689999999999999999985
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.79 E-value=0.037 Score=52.94 Aligned_cols=20 Identities=30% Similarity=0.620 Sum_probs=18.4
Q ss_pred EEEeCCCCCChhHHHHHHHh
Q 001400 164 TLLLGPPSSGKTTLLLALAG 183 (1085)
Q Consensus 164 ~~llGp~GsGKSTLL~~L~G 183 (1085)
++|+|++|+|||||++.+.+
T Consensus 6 ivvvG~~~vGKTsli~r~~~ 25 (173)
T d2a5ja1 6 YIIIGDTGVGKSCLLLQFTD 25 (173)
T ss_dssp EEEESSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHhc
Confidence 78999999999999999875
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.75 E-value=0.032 Score=61.42 Aligned_cols=22 Identities=27% Similarity=0.403 Sum_probs=20.5
Q ss_pred EEEeCCCCCChhHHHHHHHhhh
Q 001400 164 TLLLGPPSSGKTTLLLALAGRL 185 (1085)
Q Consensus 164 ~~llGp~GsGKSTLL~~L~G~l 185 (1085)
++|+|.+|+|||||+|+|.|.-
T Consensus 59 Iai~G~~n~GKSSLiNaL~G~~ 80 (400)
T d1tq4a_ 59 VAVTGETGSGKSSFINTLRGIG 80 (400)
T ss_dssp EEEEECTTSSHHHHHHHHHTCC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7999999999999999999853
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=91.57 E-value=0.037 Score=54.43 Aligned_cols=22 Identities=32% Similarity=0.495 Sum_probs=20.1
Q ss_pred eEEEEEccCCCChhHHHhhhhC
Q 001400 856 VLTALVGVSGAGKTTLMDVLAG 877 (1085)
Q Consensus 856 e~~al~G~nGaGKSTLl~~l~g 877 (1085)
.++.++|.+|||||||.+.|+.
T Consensus 3 ~li~l~GlpgsGKSTla~~L~~ 24 (213)
T d1bifa1 3 TLIVMVGLPARGKTYISKKLTR 24 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999985
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=91.55 E-value=0.048 Score=56.14 Aligned_cols=30 Identities=40% Similarity=0.541 Sum_probs=26.7
Q ss_pred eeEeCCeEEEEeCCCCCChhHHHHHHHhhh
Q 001400 156 GIIRPSRLTLLLGPPSSGKTTLLLALAGRL 185 (1085)
Q Consensus 156 ~~i~~G~~~~llGp~GsGKSTLL~~L~G~l 185 (1085)
|=+++|++|.|.||||||||||+..++-..
T Consensus 49 GGi~~g~itei~G~~gsGKTtl~l~~~~~~ 78 (263)
T d1u94a1 49 GGLPMGRIVEIYGPESSGKTTLTLQVIAAA 78 (263)
T ss_dssp SSEETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCccCceEEEEecCCCcHHHHHHHHHHHHH
Confidence 679999999999999999999988887654
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=91.53 E-value=0.036 Score=52.63 Aligned_cols=21 Identities=43% Similarity=0.637 Sum_probs=18.7
Q ss_pred EEEEccCCCChhHHHhhhhCC
Q 001400 858 TALVGVSGAGKTTLMDVLAGR 878 (1085)
Q Consensus 858 ~al~G~nGaGKSTLl~~l~g~ 878 (1085)
+.|+|+.||||||+-+.|+..
T Consensus 4 IvliG~~G~GKSTig~~La~~ 24 (165)
T d2iyva1 4 AVLVGLPGSGKSTIGRRLAKA 24 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 568899999999999999854
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=91.50 E-value=0.032 Score=54.32 Aligned_cols=21 Identities=19% Similarity=0.354 Sum_probs=19.0
Q ss_pred EEEEEccCCCChhHHHhhhhC
Q 001400 857 LTALVGVSGAGKTTLMDVLAG 877 (1085)
Q Consensus 857 ~~al~G~nGaGKSTLl~~l~g 877 (1085)
++.|+||.||||||+.+.|+-
T Consensus 5 ~I~i~GppGsGKsT~a~~La~ 25 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKT 25 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999984
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=91.47 E-value=0.043 Score=53.54 Aligned_cols=25 Identities=28% Similarity=0.365 Sum_probs=21.9
Q ss_pred CeEEEEEccCCCChhHHHhhhhCCC
Q 001400 855 GVLTALVGVSGAGKTTLMDVLAGRK 879 (1085)
Q Consensus 855 Ge~~al~G~nGaGKSTLl~~l~g~~ 879 (1085)
.-+++|-|+.||||||+++.|+...
T Consensus 9 p~~I~ieG~~GsGKTTl~~~L~~~l 33 (197)
T d2vp4a1 9 PFTVLIEGNIGSGKTTYLNHFEKYK 33 (197)
T ss_dssp CEEEEEECSTTSCHHHHHHTTGGGT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999998643
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.45 E-value=0.039 Score=52.31 Aligned_cols=21 Identities=33% Similarity=0.586 Sum_probs=18.9
Q ss_pred EEEeCCCCCChhHHHHHHHhh
Q 001400 164 TLLLGPPSSGKTTLLLALAGR 184 (1085)
Q Consensus 164 ~~llGp~GsGKSTLL~~L~G~ 184 (1085)
++++|.+|+|||||++.+.+.
T Consensus 5 i~vvG~~~vGKTSli~~l~~~ 25 (166)
T d1g16a_ 5 ILLIGDSGVGKSCLLVRFVED 25 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999998753
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.44 E-value=0.041 Score=53.26 Aligned_cols=20 Identities=40% Similarity=0.536 Sum_probs=18.6
Q ss_pred EEEeCCCCCChhHHHHHHHh
Q 001400 164 TLLLGPPSSGKTTLLLALAG 183 (1085)
Q Consensus 164 ~~llGp~GsGKSTLL~~L~G 183 (1085)
++|+|++|+|||||++.+.+
T Consensus 8 i~ivG~~~vGKTsLi~~l~~ 27 (186)
T d2f7sa1 8 LLALGDSGVGKTTFLYRYTD 27 (186)
T ss_dssp EEEESCTTSSHHHHHHHHHC
T ss_pred EEEECCCCcCHHHHHHHHhc
Confidence 78999999999999999975
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=91.43 E-value=0.067 Score=51.29 Aligned_cols=34 Identities=21% Similarity=0.150 Sum_probs=27.0
Q ss_pred eecccceeeEeCCeEEEEeCCCCCChhHHHHHHHh
Q 001400 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAG 183 (1085)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G 183 (1085)
..++.....+ .|.=+++.|+||+|||||...|.-
T Consensus 4 ~~~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~~ 37 (177)
T d1knxa2 4 AQIHGVLLEV-FGVGVLLTGRSGIGKSECALDLIN 37 (177)
T ss_dssp EEEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHHT
T ss_pred ceEEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 3455555555 888999999999999999988863
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.34 E-value=0.052 Score=51.89 Aligned_cols=20 Identities=30% Similarity=0.493 Sum_probs=18.3
Q ss_pred EEEeCCCCCChhHHHHHHHh
Q 001400 164 TLLLGPPSSGKTTLLLALAG 183 (1085)
Q Consensus 164 ~~llGp~GsGKSTLL~~L~G 183 (1085)
++|+|++|+|||||++.+.+
T Consensus 9 I~vvG~~~vGKSSli~~~~~ 28 (174)
T d1wmsa_ 9 VILLGDGGVGKSSLMNRYVT 28 (174)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 78999999999999988865
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.34 E-value=0.065 Score=53.35 Aligned_cols=28 Identities=32% Similarity=0.331 Sum_probs=25.5
Q ss_pred CCeEEEEeCCCCCChhHHHHHHHhhhCC
Q 001400 160 PSRLTLLLGPPSSGKTTLLLALAGRLGH 187 (1085)
Q Consensus 160 ~G~~~~llGp~GsGKSTLL~~L~G~l~~ 187 (1085)
+|.+++|=|+-||||||+.+.|+-.+..
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L~~ 29 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKLQP 29 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHTTT
T ss_pred CeEEEEEECCCCCcHHHHHHHHHHHHHh
Confidence 6899999999999999999999987754
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=91.34 E-value=0.049 Score=54.02 Aligned_cols=27 Identities=26% Similarity=0.199 Sum_probs=18.5
Q ss_pred CCeEEEEeCCCCCChhHHHHHHHhhhC
Q 001400 160 PSRLTLLLGPPSSGKTTLLLALAGRLG 186 (1085)
Q Consensus 160 ~G~~~~llGp~GsGKSTLL~~L~G~l~ 186 (1085)
.-.+++++||+|+||||.+-=||-++.
T Consensus 11 ~p~vi~lvGptGvGKTTTiAKLA~~~~ 37 (211)
T d1j8yf2 11 IPYVIMLVGVQGTGKATTAGKLAYFYK 37 (211)
T ss_dssp SSEEEEEECSCCC----HHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 346789999999999999888886653
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.33 E-value=0.041 Score=52.46 Aligned_cols=21 Identities=19% Similarity=0.352 Sum_probs=19.0
Q ss_pred EEEEeCCCCCChhHHHHHHHh
Q 001400 163 LTLLLGPPSSGKTTLLLALAG 183 (1085)
Q Consensus 163 ~~~llGp~GsGKSTLL~~L~G 183 (1085)
.++|+|.+|+|||||++.+.+
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~ 27 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQ 27 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 489999999999999998875
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=91.32 E-value=0.043 Score=54.29 Aligned_cols=24 Identities=42% Similarity=0.624 Sum_probs=20.1
Q ss_pred CCeEEEEEccCCCChhHHHhhhhC
Q 001400 854 PGVLTALVGVSGAGKTTLMDVLAG 877 (1085)
Q Consensus 854 ~Ge~~al~G~nGaGKSTLl~~l~g 877 (1085)
.+.+++++||+|+||||.+-=|+.
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~ 28 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGR 28 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 367899999999999999766664
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.31 E-value=0.046 Score=51.86 Aligned_cols=22 Identities=23% Similarity=0.403 Sum_probs=19.6
Q ss_pred EEEEeCCCCCChhHHHHHHHhh
Q 001400 163 LTLLLGPPSSGKTTLLLALAGR 184 (1085)
Q Consensus 163 ~~~llGp~GsGKSTLL~~L~G~ 184 (1085)
.++|+|++|+|||||++.+.+.
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~~~ 26 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 3789999999999999999764
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=91.29 E-value=0.051 Score=53.85 Aligned_cols=25 Identities=32% Similarity=0.395 Sum_probs=22.0
Q ss_pred eEEEEeCCCCCChhHHHHHHHhhhC
Q 001400 162 RLTLLLGPPSSGKTTLLLALAGRLG 186 (1085)
Q Consensus 162 ~~~~llGp~GsGKSTLL~~L~G~l~ 186 (1085)
.+++++||+|+||||.+-=||-++.
T Consensus 10 ~vi~lvGptGvGKTTTiAKLA~~~~ 34 (211)
T d2qy9a2 10 FVILMVGVNGVGKTTTIGKLARQFE 34 (211)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5799999999999999988887664
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.28 E-value=0.05 Score=51.73 Aligned_cols=22 Identities=41% Similarity=0.635 Sum_probs=19.4
Q ss_pred EEEeCCCCCChhHHHHHHHhhh
Q 001400 164 TLLLGPPSSGKTTLLLALAGRL 185 (1085)
Q Consensus 164 ~~llGp~GsGKSTLL~~L~G~l 185 (1085)
++|+|++|+|||||++.+.+..
T Consensus 4 i~lvG~~~vGKTsLi~~~~~~~ 25 (168)
T d2gjsa1 4 VLLLGAPGVGKSALARIFGGVE 25 (168)
T ss_dssp EEEECCTTSSHHHHHHHHHTC-
T ss_pred EEEECCCCcCHHHHHHHHhCCc
Confidence 6899999999999999998753
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.25 E-value=0.042 Score=52.41 Aligned_cols=21 Identities=29% Similarity=0.458 Sum_probs=19.2
Q ss_pred EEEeCCCCCChhHHHHHHHhh
Q 001400 164 TLLLGPPSSGKTTLLLALAGR 184 (1085)
Q Consensus 164 ~~llGp~GsGKSTLL~~L~G~ 184 (1085)
++|+|++|+|||||++.+.+.
T Consensus 8 i~lvG~~~vGKTsLi~~l~~~ 28 (171)
T d2ew1a1 8 IVLIGNAGVGKTCLVRRFTQG 28 (171)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999999863
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.24 E-value=0.042 Score=52.12 Aligned_cols=21 Identities=29% Similarity=0.415 Sum_probs=19.2
Q ss_pred EEEEeCCCCCChhHHHHHHHh
Q 001400 163 LTLLLGPPSSGKTTLLLALAG 183 (1085)
Q Consensus 163 ~~~llGp~GsGKSTLL~~L~G 183 (1085)
.++|+|++|+|||||++.+.+
T Consensus 6 Kv~liG~~~vGKTsLl~~~~~ 26 (167)
T d1xtqa1 6 KIAILGYRSVGKSSLTIQFVE 26 (167)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 588999999999999999875
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.22 E-value=0.045 Score=54.78 Aligned_cols=23 Identities=43% Similarity=0.761 Sum_probs=20.7
Q ss_pred EEEeCCCCCChhHHHHHHHhhhC
Q 001400 164 TLLLGPPSSGKTTLLLALAGRLG 186 (1085)
Q Consensus 164 ~~llGp~GsGKSTLL~~L~G~l~ 186 (1085)
+++.||+|+||||+.++|+..+.
T Consensus 38 lLl~Gp~G~GKttl~~~la~~l~ 60 (227)
T d1sxjc2 38 LLFYGPPGTGKTSTIVALAREIY 60 (227)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCChhHHHHHHHHHhh
Confidence 67999999999999999998763
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=91.21 E-value=0.24 Score=50.84 Aligned_cols=28 Identities=32% Similarity=0.494 Sum_probs=24.8
Q ss_pred EEEeCCeEEEEEccCCCChhHHHhhhhC
Q 001400 850 GAFRPGVLTALVGVSGAGKTTLMDVLAG 877 (1085)
Q Consensus 850 ~~i~~Ge~~al~G~nGaGKSTLl~~l~g 877 (1085)
+-++.|.++-|-|++|+|||||...++.
T Consensus 52 GGip~g~itei~G~~~sGKT~l~l~~~~ 79 (268)
T d1xp8a1 52 GGIPRGRITEIYGPESGGKTTLALAIVA 79 (268)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCccCceEEEEecCCccchHHHHHHHHH
Confidence 4578999999999999999999877775
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=91.19 E-value=0.048 Score=58.93 Aligned_cols=29 Identities=48% Similarity=0.526 Sum_probs=26.0
Q ss_pred EeCCeEEEEeCCCCCChhHHHHHHHhhhC
Q 001400 158 IRPSRLTLLLGPPSSGKTTLLLALAGRLG 186 (1085)
Q Consensus 158 i~~G~~~~llGp~GsGKSTLL~~L~G~l~ 186 (1085)
++++..+++.||||+||||+.++|++.+.
T Consensus 151 ~~~~~~~~~~g~~~~gk~~~~~~~~~~~~ 179 (362)
T d1svma_ 151 IPKKRYWLFKGPIDSGKTTLAAALLELCG 179 (362)
T ss_dssp CTTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCCcCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 36678999999999999999999999884
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=91.14 E-value=0.035 Score=54.26 Aligned_cols=25 Identities=24% Similarity=0.387 Sum_probs=22.5
Q ss_pred eCCeEEEEEccCCCChhHHHhhhhC
Q 001400 853 RPGVLTALVGVSGAGKTTLMDVLAG 877 (1085)
Q Consensus 853 ~~Ge~~al~G~nGaGKSTLl~~l~g 877 (1085)
+.+.++.|+||.||||||+.+.|+-
T Consensus 6 ~~~~iI~l~G~pGSGKsT~a~~La~ 30 (194)
T d3adka_ 6 KKSKIIFVVGGPGSGKGTQCEKIVQ 30 (194)
T ss_dssp HTSCEEEEEECTTSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999999985
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.14 E-value=0.048 Score=51.89 Aligned_cols=20 Identities=25% Similarity=0.506 Sum_probs=18.4
Q ss_pred EEEeCCCCCChhHHHHHHHh
Q 001400 164 TLLLGPPSSGKTTLLLALAG 183 (1085)
Q Consensus 164 ~~llGp~GsGKSTLL~~L~G 183 (1085)
++|+|.+|+|||||++.+.+
T Consensus 5 i~viG~~~vGKTsLi~r~~~ 24 (171)
T d2erxa1 5 VAVFGAGGVGKSSLVLRFVK 24 (171)
T ss_dssp EEEECCTTSSHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 68999999999999998875
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=91.13 E-value=0.043 Score=53.41 Aligned_cols=20 Identities=30% Similarity=0.594 Sum_probs=18.8
Q ss_pred EEEEEccCCCChhHHHhhhh
Q 001400 857 LTALVGVSGAGKTTLMDVLA 876 (1085)
Q Consensus 857 ~~al~G~nGaGKSTLl~~l~ 876 (1085)
++||.|+.||||||+.+.|.
T Consensus 5 IIgitG~~gSGKstva~~l~ 24 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLR 24 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 78999999999999999985
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=91.05 E-value=0.039 Score=57.35 Aligned_cols=40 Identities=10% Similarity=0.238 Sum_probs=28.4
Q ss_pred EEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCCCceEEEEccCCCCC
Q 001400 163 LTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQV 221 (1085)
Q Consensus 163 ~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~~~~~~yv~Q~d~~~ 221 (1085)
+++|-|+|||||||+.++|...+.. .| -.++.+++++.|-
T Consensus 6 IIgIaG~SGSGKTTva~~l~~i~~~----~~---------------v~~~iI~~Dsfyr 45 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQIFRR----EG---------------VKAVSIEGDAFHR 45 (288)
T ss_dssp EEEEESCC---CCTHHHHHHHHHHH----HT---------------CCEEEEEGGGGBS
T ss_pred EEEEECCCCCcHHHHHHHHHHHHhh----cC---------------CCeEEEeCCCCCc
Confidence 7999999999999999999877642 11 1357889988763
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.04 E-value=0.047 Score=54.23 Aligned_cols=25 Identities=44% Similarity=0.535 Sum_probs=22.6
Q ss_pred eCCeEEEEEccCCCChhHHHhhhhC
Q 001400 853 RPGVLTALVGVSGAGKTTLMDVLAG 877 (1085)
Q Consensus 853 ~~Ge~~al~G~nGaGKSTLl~~l~g 877 (1085)
+.|-+++|-|+-||||||+.+.|..
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~ 25 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVE 25 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999999999876
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.04 E-value=0.05 Score=51.57 Aligned_cols=21 Identities=24% Similarity=0.487 Sum_probs=18.9
Q ss_pred EEEeCCCCCChhHHHHHHHhh
Q 001400 164 TLLLGPPSSGKTTLLLALAGR 184 (1085)
Q Consensus 164 ~~llGp~GsGKSTLL~~L~G~ 184 (1085)
++|+|.+|+|||||++.+.+.
T Consensus 7 ivlvG~~~vGKTsli~~~~~~ 27 (166)
T d1z0fa1 7 YIIIGDMGVGKSCLLHQFTEK 27 (166)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999998753
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=91.01 E-value=0.05 Score=52.53 Aligned_cols=20 Identities=30% Similarity=0.554 Sum_probs=18.5
Q ss_pred EEEeCCCCCChhHHHHHHHh
Q 001400 164 TLLLGPPSSGKTTLLLALAG 183 (1085)
Q Consensus 164 ~~llGp~GsGKSTLL~~L~G 183 (1085)
++|+|.+|+|||||++.+.+
T Consensus 5 v~vvG~~~vGKSSLi~~l~~ 24 (184)
T d1vg8a_ 5 VIILGDSGVGKTSLMNQYVN 24 (184)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999998875
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=90.99 E-value=0.038 Score=56.90 Aligned_cols=24 Identities=29% Similarity=0.245 Sum_probs=20.6
Q ss_pred EEEEeCCCCCChhHHHHHHHhhhC
Q 001400 163 LTLLLGPPSSGKTTLLLALAGRLG 186 (1085)
Q Consensus 163 ~~~llGp~GsGKSTLL~~L~G~l~ 186 (1085)
++.|.||||+||||++++++..+.
T Consensus 48 ~l~l~GppGtGKT~l~~~l~~~l~ 71 (287)
T d1w5sa2 48 IYGSIGRVGIGKTTLAKFTVKRVS 71 (287)
T ss_dssp EEECTTCCSSSHHHHHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHHHHH
Confidence 456679999999999999998763
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.98 E-value=0.05 Score=52.19 Aligned_cols=21 Identities=33% Similarity=0.659 Sum_probs=19.1
Q ss_pred EEEeCCCCCChhHHHHHHHhh
Q 001400 164 TLLLGPPSSGKTTLLLALAGR 184 (1085)
Q Consensus 164 ~~llGp~GsGKSTLL~~L~G~ 184 (1085)
++|+|.+|+|||||++.+.+.
T Consensus 10 i~vvG~~~vGKTsli~~l~~~ 30 (177)
T d1x3sa1 10 ILIIGESGVGKSSLLLRFTDD 30 (177)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999998763
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.97 E-value=0.047 Score=53.17 Aligned_cols=21 Identities=29% Similarity=0.387 Sum_probs=19.4
Q ss_pred EEEEEccCCCChhHHHhhhhC
Q 001400 857 LTALVGVSGAGKTTLMDVLAG 877 (1085)
Q Consensus 857 ~~al~G~nGaGKSTLl~~l~g 877 (1085)
++.|+||.||||||..+.|+-
T Consensus 3 iI~i~GppGSGKsT~a~~La~ 23 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVE 23 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 579999999999999999984
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=90.84 E-value=0.05 Score=52.24 Aligned_cols=21 Identities=33% Similarity=0.517 Sum_probs=18.9
Q ss_pred EEEEEccCCCChhHHHhhhhC
Q 001400 857 LTALVGVSGAGKTTLMDVLAG 877 (1085)
Q Consensus 857 ~~al~G~nGaGKSTLl~~l~g 877 (1085)
.+.|+||.||||||+.+.|+-
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~ 22 (182)
T d1zina1 2 NLVLMGLPGAGKGTQAEKIVA 22 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 367999999999999999975
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=90.83 E-value=0.052 Score=53.14 Aligned_cols=22 Identities=41% Similarity=0.454 Sum_probs=20.2
Q ss_pred EEEeCCCCCChhHHHHHHHhhh
Q 001400 164 TLLLGPPSSGKTTLLLALAGRL 185 (1085)
Q Consensus 164 ~~llGp~GsGKSTLL~~L~G~l 185 (1085)
++|+|...+|||||+++|.|..
T Consensus 8 IaiiGhvd~GKSTL~~~L~g~~ 29 (195)
T d1kk1a3 8 IGMVGHVDHGKTTLTKALTGVW 29 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEeccCCcHHHHHHHHHhhh
Confidence 6999999999999999998854
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.81 E-value=0.04 Score=54.36 Aligned_cols=22 Identities=32% Similarity=0.382 Sum_probs=20.0
Q ss_pred EEEEEccCCCChhHHHhhhhCC
Q 001400 857 LTALVGVSGAGKTTLMDVLAGR 878 (1085)
Q Consensus 857 ~~al~G~nGaGKSTLl~~l~g~ 878 (1085)
.++|+|+.|+|||||++.|.+.
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~ 23 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTG 23 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999873
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=90.78 E-value=3.5 Score=41.73 Aligned_cols=24 Identities=25% Similarity=0.331 Sum_probs=21.4
Q ss_pred CeEEEEeCCCCCChhHHHHHHHhh
Q 001400 161 SRLTLLLGPPSSGKTTLLLALAGR 184 (1085)
Q Consensus 161 G~~~~llGp~GsGKSTLL~~L~G~ 184 (1085)
..+++|.|..|.|||||.+.+...
T Consensus 44 ~~~v~I~GmgGiGKTtLA~~v~~~ 67 (277)
T d2a5yb3 44 SFFLFLHGRAGSGKSVIASQALSK 67 (277)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 568999999999999999998654
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=90.68 E-value=0.046 Score=51.71 Aligned_cols=21 Identities=43% Similarity=0.623 Sum_probs=19.0
Q ss_pred EEEEEccCCCChhHHHhhhhC
Q 001400 857 LTALVGVSGAGKTTLMDVLAG 877 (1085)
Q Consensus 857 ~~al~G~nGaGKSTLl~~l~g 877 (1085)
.++++|+.|+|||||++.+.+
T Consensus 4 ki~i~G~~~~GKTsLl~~l~~ 24 (164)
T d1zd9a1 4 ELTLVGLQYSGKTTFVNVIAS 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 478999999999999998876
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.67 E-value=0.057 Score=50.93 Aligned_cols=20 Identities=25% Similarity=0.499 Sum_probs=18.4
Q ss_pred EEEeCCCCCChhHHHHHHHh
Q 001400 164 TLLLGPPSSGKTTLLLALAG 183 (1085)
Q Consensus 164 ~~llGp~GsGKSTLL~~L~G 183 (1085)
++|+|.+|+|||||++.+.+
T Consensus 5 v~liG~~~vGKTsLl~~~~~ 24 (165)
T d1z06a1 5 IIVIGDSNVGKTCLTYRFCA 24 (165)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999998874
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.64 E-value=0.052 Score=51.23 Aligned_cols=20 Identities=35% Similarity=0.494 Sum_probs=18.6
Q ss_pred EEEeCCCCCChhHHHHHHHh
Q 001400 164 TLLLGPPSSGKTTLLLALAG 183 (1085)
Q Consensus 164 ~~llGp~GsGKSTLL~~L~G 183 (1085)
++|+|.+|+|||||++.+.+
T Consensus 3 v~vvG~~~vGKTsLi~r~~~ 22 (164)
T d1yzqa1 3 LVFLGEQSVGKTSLITRFMY 22 (164)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999999875
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.60 E-value=0.046 Score=60.04 Aligned_cols=22 Identities=32% Similarity=0.640 Sum_probs=20.4
Q ss_pred EEEEEccCCCChhHHHhhhhCC
Q 001400 857 LTALVGVSGAGKTTLMDVLAGR 878 (1085)
Q Consensus 857 ~~al~G~nGaGKSTLl~~l~g~ 878 (1085)
.+||+|.+|+|||||+|.|.|.
T Consensus 58 ~Iai~G~~n~GKSSLiNaL~G~ 79 (400)
T d1tq4a_ 58 NVAVTGETGSGKSSFINTLRGI 79 (400)
T ss_dssp EEEEEECTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4799999999999999999984
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.59 E-value=0.052 Score=51.81 Aligned_cols=20 Identities=30% Similarity=0.524 Sum_probs=18.5
Q ss_pred EEEeCCCCCChhHHHHHHHh
Q 001400 164 TLLLGPPSSGKTTLLLALAG 183 (1085)
Q Consensus 164 ~~llGp~GsGKSTLL~~L~G 183 (1085)
++|+|.+|+|||||++.+.+
T Consensus 8 I~lvG~~~vGKTsll~~~~~ 27 (174)
T d2bmea1 8 FLVIGNAGTGKSCLLHQFIE 27 (174)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999998864
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=90.57 E-value=0.062 Score=52.79 Aligned_cols=24 Identities=33% Similarity=0.481 Sum_probs=21.7
Q ss_pred EEEEeCCCCCChhHHHHHHHhhhC
Q 001400 163 LTLLLGPPSSGKTTLLLALAGRLG 186 (1085)
Q Consensus 163 ~~~llGp~GsGKSTLL~~L~G~l~ 186 (1085)
+++|-|+-||||||+++.|+..+.
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l~ 25 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 578899999999999999998774
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=90.56 E-value=0.062 Score=50.51 Aligned_cols=25 Identities=36% Similarity=0.422 Sum_probs=23.4
Q ss_pred eCCeEEEEEccCCCChhHHHhhhhC
Q 001400 853 RPGVLTALVGVSGAGKTTLMDVLAG 877 (1085)
Q Consensus 853 ~~Ge~~al~G~nGaGKSTLl~~l~g 877 (1085)
+||.+++|-|+=||||||+.+.++.
T Consensus 31 ~~g~ii~L~G~LGaGKTtfvr~~~~ 55 (158)
T d1htwa_ 31 EKAIMVYLNGDLGAGKTTLTRGMLQ 55 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEecCCCccHHHHHHHHHh
Confidence 6899999999999999999999984
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=90.54 E-value=0.1 Score=49.97 Aligned_cols=33 Identities=18% Similarity=0.110 Sum_probs=25.7
Q ss_pred ecccceeeEeCCeEEEEeCCCCCChhHHHHHHHh
Q 001400 150 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAG 183 (1085)
Q Consensus 150 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G 183 (1085)
.|+. +...-.|.=+++.|+||+|||||...|..
T Consensus 4 ~lH~-~~v~~~g~gvl~~G~sG~GKStlal~l~~ 36 (176)
T d1kkma_ 4 SMHG-VLVDIYGLGVLITGDSGVGKSETALELVQ 36 (176)
T ss_dssp EEEE-EEEEETTEEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEE-EEEEECCEEEEEEeCCCCCHHHHHHHHHH
Confidence 3443 34455788999999999999999988864
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=90.51 E-value=0.057 Score=53.30 Aligned_cols=20 Identities=35% Similarity=0.350 Sum_probs=18.6
Q ss_pred EEEEeCCCCCChhHHHHHHH
Q 001400 163 LTLLLGPPSSGKTTLLLALA 182 (1085)
Q Consensus 163 ~~~llGp~GsGKSTLL~~L~ 182 (1085)
+++|.|+.||||||+.+.|.
T Consensus 4 iIgITG~igSGKStv~~~l~ 23 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFT 23 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999985
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=90.46 E-value=0.055 Score=53.79 Aligned_cols=21 Identities=29% Similarity=0.479 Sum_probs=19.5
Q ss_pred EEEEEccCCCChhHHHhhhhC
Q 001400 857 LTALVGVSGAGKTTLMDVLAG 877 (1085)
Q Consensus 857 ~~al~G~nGaGKSTLl~~l~g 877 (1085)
+++|.||.||||||+-+.|+-
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~ 25 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAK 25 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999995
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.45 E-value=0.054 Score=52.87 Aligned_cols=20 Identities=40% Similarity=0.674 Sum_probs=18.6
Q ss_pred EEEeCCCCCChhHHHHHHHh
Q 001400 164 TLLLGPPSSGKTTLLLALAG 183 (1085)
Q Consensus 164 ~~llGp~GsGKSTLL~~L~G 183 (1085)
++|+|++|+|||||++.+.+
T Consensus 9 ivvvG~~~vGKTsli~~l~~ 28 (194)
T d2bcgy1 9 LLLIGNSGVGKSCLLLRFSD 28 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHhh
Confidence 88999999999999998875
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=90.40 E-value=0.057 Score=51.51 Aligned_cols=23 Identities=43% Similarity=0.606 Sum_probs=20.4
Q ss_pred EEEEEccCCCChhHHHhhhhCCC
Q 001400 857 LTALVGVSGAGKTTLMDVLAGRK 879 (1085)
Q Consensus 857 ~~al~G~nGaGKSTLl~~l~g~~ 879 (1085)
+++++|+.|+|||||++.|.+..
T Consensus 18 kI~vvG~~~vGKSsLi~~l~~~~ 40 (176)
T d1fzqa_ 18 RILLLGLDNAGKTTLLKQLASED 40 (176)
T ss_dssp EEEEEESTTSSHHHHHHHHCCSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57999999999999999998743
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=90.40 E-value=0.061 Score=53.33 Aligned_cols=42 Identities=24% Similarity=0.227 Sum_probs=28.7
Q ss_pred eCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCcc
Q 001400 853 RPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYP 894 (1085)
Q Consensus 853 ~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~ 894 (1085)
+.|-++-|.|.+|||||||.+.|.-........-.+.++|-.
T Consensus 22 ~kg~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldgD~ 63 (208)
T d1m7ga_ 22 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDN 63 (208)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCceEEEEcchH
Confidence 468899999999999999999997422100001246677743
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=90.40 E-value=0.05 Score=51.75 Aligned_cols=21 Identities=29% Similarity=0.377 Sum_probs=18.9
Q ss_pred EEEEEccCCCChhHHHhhhhC
Q 001400 857 LTALVGVSGAGKTTLMDVLAG 877 (1085)
Q Consensus 857 ~~al~G~nGaGKSTLl~~l~g 877 (1085)
+++++|..|+|||||++.+.+
T Consensus 7 Ki~vvG~~~vGKTsLi~~l~~ 27 (169)
T d3raba_ 7 KILIIGNSSVGKTSFLFRYAD 27 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHc
Confidence 379999999999999998875
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=90.39 E-value=0.052 Score=57.75 Aligned_cols=23 Identities=26% Similarity=0.521 Sum_probs=20.6
Q ss_pred CeEEEEEccCCCChhHHHhhhhC
Q 001400 855 GVLTALVGVSGAGKTTLMDVLAG 877 (1085)
Q Consensus 855 Ge~~al~G~nGaGKSTLl~~l~g 877 (1085)
.-.+||.|+.|||||||++.|+.
T Consensus 54 ~~~IgitG~pGaGKSTLi~~l~~ 76 (327)
T d2p67a1 54 TLRLGVTGTPGAGKSTFLEAFGM 76 (327)
T ss_dssp SEEEEEEECTTSCHHHHHHHHHH
T ss_pred ceEEEeeCCCCCCHHHHHHHHHH
Confidence 45789999999999999999974
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=90.35 E-value=0.048 Score=54.18 Aligned_cols=24 Identities=46% Similarity=0.631 Sum_probs=19.8
Q ss_pred CCeEEEEEccCCCChhHHHhhhhC
Q 001400 854 PGVLTALVGVSGAGKTTLMDVLAG 877 (1085)
Q Consensus 854 ~Ge~~al~G~nGaGKSTLl~~l~g 877 (1085)
+..+++++||||+||||.+-=|+-
T Consensus 10 ~p~vi~lvGptGvGKTTTiAKLAa 33 (213)
T d1vmaa2 10 PPFVIMVVGVNGTGKTTSCGKLAK 33 (213)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 445889999999999998766664
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.24 E-value=0.042 Score=52.57 Aligned_cols=20 Identities=35% Similarity=0.609 Sum_probs=8.6
Q ss_pred EEEeCCCCCChhHHHHHHHh
Q 001400 164 TLLLGPPSSGKTTLLLALAG 183 (1085)
Q Consensus 164 ~~llGp~GsGKSTLL~~L~G 183 (1085)
++|+|.+|+|||||++.|.+
T Consensus 9 i~vvG~~~vGKTsLi~~l~~ 28 (173)
T d2fu5c1 9 LLLIGDSGVGKTCVLFRFSE 28 (173)
T ss_dssp EEEECCCCC-----------
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999998875
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=90.22 E-value=0.061 Score=51.84 Aligned_cols=21 Identities=38% Similarity=0.534 Sum_probs=19.2
Q ss_pred EEEEEccCCCChhHHHhhhhC
Q 001400 857 LTALVGVSGAGKTTLMDVLAG 877 (1085)
Q Consensus 857 ~~al~G~nGaGKSTLl~~l~g 877 (1085)
.+.|+||.||||||+.+.|+-
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~ 22 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVE 22 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999995
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=90.16 E-value=0.053 Score=55.59 Aligned_cols=24 Identities=29% Similarity=0.365 Sum_probs=21.1
Q ss_pred eEEEEEccCCCChhHHHhhhhCCC
Q 001400 856 VLTALVGVSGAGKTTLMDVLAGRK 879 (1085)
Q Consensus 856 e~~al~G~nGaGKSTLl~~l~g~~ 879 (1085)
..+.|.||+|+|||||.+.|++..
T Consensus 33 ~~ilL~GpPGtGKT~la~~la~~~ 56 (273)
T d1gvnb_ 33 TAFLLGGQPGSGKTSLRSAIFEET 56 (273)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHh
Confidence 457899999999999999999854
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=90.14 E-value=0.036 Score=53.46 Aligned_cols=21 Identities=43% Similarity=0.531 Sum_probs=18.3
Q ss_pred EEEEeCCCCCChhHHHHHHHh
Q 001400 163 LTLLLGPPSSGKTTLLLALAG 183 (1085)
Q Consensus 163 ~~~llGp~GsGKSTLL~~L~G 183 (1085)
.++++|++|+|||||++.|.+
T Consensus 19 KI~lvG~~~vGKTsLi~~l~~ 39 (182)
T d1moza_ 19 RILILGLDGAGKTTILYRLQI 39 (182)
T ss_dssp EEEEEEETTSSHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 367999999999999998853
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.12 E-value=0.068 Score=50.64 Aligned_cols=20 Identities=40% Similarity=0.602 Sum_probs=18.3
Q ss_pred EEEeCCCCCChhHHHHHHHh
Q 001400 164 TLLLGPPSSGKTTLLLALAG 183 (1085)
Q Consensus 164 ~~llGp~GsGKSTLL~~L~G 183 (1085)
++|+|.+|+|||||++.+.+
T Consensus 6 ivlvG~~~vGKTsLi~r~~~ 25 (167)
T d1z08a1 6 VVLLGEGCVGKTSLVLRYCE 25 (167)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 68999999999999998865
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=90.09 E-value=0.08 Score=58.08 Aligned_cols=29 Identities=41% Similarity=0.594 Sum_probs=25.2
Q ss_pred eCCeEEEEeCCCCCChhHHHHHHHhhhCC
Q 001400 159 RPSRLTLLLGPPSSGKTTLLLALAGRLGH 187 (1085)
Q Consensus 159 ~~G~~~~llGp~GsGKSTLL~~L~G~l~~ 187 (1085)
.|+-+++|.||.||||||+|.++...+..
T Consensus 156 ~~~GliLvtGpTGSGKSTTl~~~l~~~~~ 184 (401)
T d1p9ra_ 156 RPHGIILVTGPTGSGKSTTLYAGLQELNS 184 (401)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHCC
T ss_pred hhhceEEEEcCCCCCccHHHHHHhhhhcC
Confidence 45679999999999999999999887643
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=90.08 E-value=0.069 Score=52.81 Aligned_cols=20 Identities=40% Similarity=0.459 Sum_probs=18.8
Q ss_pred EEEEeCCCCCChhHHHHHHH
Q 001400 163 LTLLLGPPSSGKTTLLLALA 182 (1085)
Q Consensus 163 ~~~llGp~GsGKSTLL~~L~ 182 (1085)
+++|.|++||||||..+.|.
T Consensus 5 iIgitG~igSGKStv~~~l~ 24 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFA 24 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCcCCHHHHHHHHH
Confidence 68999999999999999996
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.03 E-value=0.069 Score=53.68 Aligned_cols=25 Identities=24% Similarity=0.254 Sum_probs=22.5
Q ss_pred CeEEEEEccCCCChhHHHhhhhCCC
Q 001400 855 GVLTALVGVSGAGKTTLMDVLAGRK 879 (1085)
Q Consensus 855 Ge~~al~G~nGaGKSTLl~~l~g~~ 879 (1085)
+.+++|-|+-||||||+++.|+...
T Consensus 2 ~k~I~ieG~dGsGKST~~~~L~~~l 26 (241)
T d1p5zb_ 2 IKKISIEGNIAAGKSTFVNILKQLC 26 (241)
T ss_dssp CEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
Confidence 5689999999999999999999754
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.00 E-value=0.056 Score=51.54 Aligned_cols=21 Identities=38% Similarity=0.561 Sum_probs=19.1
Q ss_pred EEEEEccCCCChhHHHhhhhC
Q 001400 857 LTALVGVSGAGKTTLMDVLAG 877 (1085)
Q Consensus 857 ~~al~G~nGaGKSTLl~~l~g 877 (1085)
+++|+|+.|+|||||++.+.+
T Consensus 4 Ki~~vG~~~vGKSsLi~~~~~ 24 (175)
T d1ky3a_ 4 KVIILGDSGVGKTSLMHRYVN 24 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHc
Confidence 478999999999999999875
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.00 E-value=0.067 Score=51.06 Aligned_cols=21 Identities=38% Similarity=0.567 Sum_probs=19.3
Q ss_pred EEEeCCCCCChhHHHHHHHhh
Q 001400 164 TLLLGPPSSGKTTLLLALAGR 184 (1085)
Q Consensus 164 ~~llGp~GsGKSTLL~~L~G~ 184 (1085)
++|+|.+|+|||||++.+.+.
T Consensus 6 v~lvG~~~vGKTsLi~~~~~~ 26 (172)
T d2g3ya1 6 VVLIGEQGVGKSTLANIFAGV 26 (172)
T ss_dssp EEEECCTTSSHHHHHHHHHCC
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999999864
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.94 E-value=0.056 Score=51.18 Aligned_cols=21 Identities=33% Similarity=0.444 Sum_probs=19.2
Q ss_pred EEEEEccCCCChhHHHhhhhC
Q 001400 857 LTALVGVSGAGKTTLMDVLAG 877 (1085)
Q Consensus 857 ~~al~G~nGaGKSTLl~~l~g 877 (1085)
+++|+|.+|+|||||++.+.+
T Consensus 5 Ki~viG~~~vGKTsli~~l~~ 25 (166)
T d1ctqa_ 5 KLVVVGAGGVGKSALTIQLIQ 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999998876
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.93 E-value=0.072 Score=50.44 Aligned_cols=20 Identities=25% Similarity=0.506 Sum_probs=18.5
Q ss_pred EEEeCCCCCChhHHHHHHHh
Q 001400 164 TLLLGPPSSGKTTLLLALAG 183 (1085)
Q Consensus 164 ~~llGp~GsGKSTLL~~L~G 183 (1085)
++|+|.+|+|||||++.+.+
T Consensus 7 i~lvG~~~vGKTsli~rl~~ 26 (167)
T d1z0ja1 7 VCLLGDTGVGKSSIMWRFVE 26 (167)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999999874
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.85 E-value=0.066 Score=51.27 Aligned_cols=22 Identities=27% Similarity=0.424 Sum_probs=19.3
Q ss_pred EEEEeCCCCCChhHHHHHHHhh
Q 001400 163 LTLLLGPPSSGKTTLLLALAGR 184 (1085)
Q Consensus 163 ~~~llGp~GsGKSTLL~~L~G~ 184 (1085)
.++|+|++|+|||||++.+.+.
T Consensus 4 KivvvG~~~vGKTsLi~~~~~~ 25 (177)
T d1kmqa_ 4 KLVIVGDGACGKTCLLIVNSKD 25 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4789999999999999998753
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.85 E-value=0.058 Score=54.76 Aligned_cols=22 Identities=41% Similarity=0.613 Sum_probs=20.4
Q ss_pred EEEeCCCCCChhHHHHHHHhhh
Q 001400 164 TLLLGPPSSGKTTLLLALAGRL 185 (1085)
Q Consensus 164 ~~llGp~GsGKSTLL~~L~G~l 185 (1085)
++|.||+|+||||+.++++-.+
T Consensus 36 lll~Gp~G~GKTt~~~~la~~l 57 (252)
T d1sxje2 36 LLLYGPNGTGKKTRCMALLESI 57 (252)
T ss_dssp EEEECSTTSSHHHHHHTHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHhh
Confidence 7899999999999999999765
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=89.84 E-value=0.057 Score=53.47 Aligned_cols=23 Identities=43% Similarity=0.611 Sum_probs=19.5
Q ss_pred CeEEEEEccCCCChhHHHhhhhC
Q 001400 855 GVLTALVGVSGAGKTTLMDVLAG 877 (1085)
Q Consensus 855 Ge~~al~G~nGaGKSTLl~~l~g 877 (1085)
-.+++++||||+||||.+-=|+-
T Consensus 9 p~vi~lvGptGvGKTTTiAKLA~ 31 (211)
T d2qy9a2 9 PFVILMVGVNGVGKTTTIGKLAR 31 (211)
T ss_dssp TEEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999998876764
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.83 E-value=0.074 Score=50.47 Aligned_cols=20 Identities=20% Similarity=0.439 Sum_probs=18.6
Q ss_pred EEEeCCCCCChhHHHHHHHh
Q 001400 164 TLLLGPPSSGKTTLLLALAG 183 (1085)
Q Consensus 164 ~~llGp~GsGKSTLL~~L~G 183 (1085)
++|+|++|+|||||++-+.+
T Consensus 5 i~lvG~~~vGKTsli~r~~~ 24 (168)
T d2atva1 5 LAIFGRAGVGKSALVVRFLT 24 (168)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 68999999999999999975
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=89.81 E-value=0.072 Score=52.68 Aligned_cols=23 Identities=48% Similarity=0.458 Sum_probs=19.7
Q ss_pred CeEEEEEccCCCChhHHHhhhhC
Q 001400 855 GVLTALVGVSGAGKTTLMDVLAG 877 (1085)
Q Consensus 855 Ge~~al~G~nGaGKSTLl~~l~g 877 (1085)
..++.++||||+||||.+-=|+.
T Consensus 10 ~~vi~lvGp~GvGKTTTiaKLA~ 32 (207)
T d1ls1a2 10 RNLWFLVGLQGSGKTTTAAKLAL 32 (207)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999877774
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=89.80 E-value=0.043 Score=52.46 Aligned_cols=21 Identities=43% Similarity=0.543 Sum_probs=18.6
Q ss_pred EEEEeCCCCCChhHHHHHHHh
Q 001400 163 LTLLLGPPSSGKTTLLLALAG 183 (1085)
Q Consensus 163 ~~~llGp~GsGKSTLL~~L~G 183 (1085)
.++++|++|+|||||++.+.+
T Consensus 14 kIvlvG~~~vGKTSli~rl~~ 34 (173)
T d1e0sa_ 14 RILMLGLDAAGKTTILYKLKL 34 (173)
T ss_dssp EEEEEEETTSSHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 367999999999999999864
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=89.79 E-value=0.045 Score=56.84 Aligned_cols=21 Identities=29% Similarity=0.542 Sum_probs=16.3
Q ss_pred EEEEEccCCCChhHHHhhhhC
Q 001400 857 LTALVGVSGAGKTTLMDVLAG 877 (1085)
Q Consensus 857 ~~al~G~nGaGKSTLl~~l~g 877 (1085)
++||.|+|||||||+.+.|..
T Consensus 6 IIgIaG~SGSGKTTva~~l~~ 26 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQ 26 (288)
T ss_dssp EEEEESCC---CCTHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHH
Confidence 799999999999999998864
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.63 E-value=0.14 Score=49.13 Aligned_cols=22 Identities=32% Similarity=0.371 Sum_probs=19.6
Q ss_pred EEEEEccCCCChhHHHhhhhCC
Q 001400 857 LTALVGVSGAGKTTLMDVLAGR 878 (1085)
Q Consensus 857 ~~al~G~nGaGKSTLl~~l~g~ 878 (1085)
+++|+|+.|+|||||++.+.+.
T Consensus 7 Ki~ivG~~~vGKTsLi~~l~~~ 28 (186)
T d2f7sa1 7 KLLALGDSGVGKTTFLYRYTDN 28 (186)
T ss_dssp EEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEECCCCcCHHHHHHHHhcC
Confidence 3789999999999999998863
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=89.62 E-value=0.071 Score=51.15 Aligned_cols=21 Identities=29% Similarity=0.313 Sum_probs=18.9
Q ss_pred EEEEEccCCCChhHHHhhhhC
Q 001400 857 LTALVGVSGAGKTTLMDVLAG 877 (1085)
Q Consensus 857 ~~al~G~nGaGKSTLl~~l~g 877 (1085)
.+.|+||.||||||..+.|+-
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~ 22 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIME 22 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999984
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.62 E-value=0.082 Score=52.99 Aligned_cols=26 Identities=35% Similarity=0.498 Sum_probs=23.4
Q ss_pred EEeCCeEEEEEccCCCChhHHHhhhh
Q 001400 851 AFRPGVLTALVGVSGAGKTTLMDVLA 876 (1085)
Q Consensus 851 ~i~~Ge~~al~G~nGaGKSTLl~~l~ 876 (1085)
-+++|+++-|.|++|+|||||..-++
T Consensus 30 Gi~~G~~~li~G~pGsGKT~l~lq~~ 55 (251)
T d1szpa2 30 GVETGSITELFGEFRTGKSQLCHTLA 55 (251)
T ss_dssp SEESSSEEEEEESTTSSHHHHHHHHT
T ss_pred CCcCCeEEEEEcCCCCCHHHHHHHHH
Confidence 47899999999999999999987665
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=89.59 E-value=0.065 Score=51.52 Aligned_cols=21 Identities=38% Similarity=0.531 Sum_probs=19.3
Q ss_pred EEEEEccCCCChhHHHhhhhC
Q 001400 857 LTALVGVSGAGKTTLMDVLAG 877 (1085)
Q Consensus 857 ~~al~G~nGaGKSTLl~~l~g 877 (1085)
+++++|++|+|||||++.+.+
T Consensus 19 KI~lvG~~~vGKTsLi~~l~~ 39 (182)
T d1moza_ 19 RILILGLDGAGKTTILYRLQI 39 (182)
T ss_dssp EEEEEEETTSSHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 578999999999999999876
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.55 E-value=0.073 Score=50.79 Aligned_cols=21 Identities=19% Similarity=0.354 Sum_probs=18.9
Q ss_pred EEEEeCCCCCChhHHHHHHHh
Q 001400 163 LTLLLGPPSSGKTTLLLALAG 183 (1085)
Q Consensus 163 ~~~llGp~GsGKSTLL~~L~G 183 (1085)
.++|+|.+|+|||||++-+.+
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~~ 28 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFIQ 28 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999998875
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.47 E-value=0.08 Score=50.20 Aligned_cols=22 Identities=27% Similarity=0.554 Sum_probs=19.0
Q ss_pred EEEEeCCCCCChhHHHHHHHhh
Q 001400 163 LTLLLGPPSSGKTTLLLALAGR 184 (1085)
Q Consensus 163 ~~~llGp~GsGKSTLL~~L~G~ 184 (1085)
.++|+|.+|+|||||++.+.+.
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~~~ 26 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4689999999999999987653
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.44 E-value=0.08 Score=50.97 Aligned_cols=22 Identities=27% Similarity=0.466 Sum_probs=19.6
Q ss_pred EEEEeCCCCCChhHHHHHHHhh
Q 001400 163 LTLLLGPPSSGKTTLLLALAGR 184 (1085)
Q Consensus 163 ~~~llGp~GsGKSTLL~~L~G~ 184 (1085)
.++|+|.+|+|||||++.+.+.
T Consensus 7 KivviG~~~vGKTsli~~~~~~ 28 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTTN 28 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999998753
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=89.44 E-value=0.07 Score=56.05 Aligned_cols=21 Identities=29% Similarity=0.487 Sum_probs=19.1
Q ss_pred EEEEEccCCCChhHHHhhhhC
Q 001400 857 LTALVGVSGAGKTTLMDVLAG 877 (1085)
Q Consensus 857 ~~al~G~nGaGKSTLl~~l~g 877 (1085)
++||.|++||||||+.+.|..
T Consensus 82 iIGIaG~sgSGKSTla~~L~~ 102 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEeCCCCCCCcHHHHHHHH
Confidence 789999999999999888865
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.41 E-value=0.078 Score=50.01 Aligned_cols=21 Identities=19% Similarity=0.389 Sum_probs=18.5
Q ss_pred EEEEEccCCCChhHHHhhhhC
Q 001400 857 LTALVGVSGAGKTTLMDVLAG 877 (1085)
Q Consensus 857 ~~al~G~nGaGKSTLl~~l~g 877 (1085)
+++|+|..|+|||||++-+.+
T Consensus 4 Kv~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 4 KMVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999987764
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.40 E-value=0.067 Score=51.14 Aligned_cols=21 Identities=33% Similarity=0.578 Sum_probs=18.8
Q ss_pred EEEEEccCCCChhHHHhhhhC
Q 001400 857 LTALVGVSGAGKTTLMDVLAG 877 (1085)
Q Consensus 857 ~~al~G~nGaGKSTLl~~l~g 877 (1085)
+++++|+.|+|||||++.+.+
T Consensus 6 Ki~vvG~~~vGKTsLi~~~~~ 26 (175)
T d2f9la1 6 KVVLIGDSGVGKSNLLSRFTR 26 (175)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 479999999999999998765
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.31 E-value=0.084 Score=50.10 Aligned_cols=20 Identities=35% Similarity=0.617 Sum_probs=18.3
Q ss_pred EEEeCCCCCChhHHHHHHHh
Q 001400 164 TLLLGPPSSGKTTLLLALAG 183 (1085)
Q Consensus 164 ~~llGp~GsGKSTLL~~L~G 183 (1085)
++|+|++|+|||||++.+.+
T Consensus 9 i~vvG~~~vGKTsli~~~~~ 28 (170)
T d2g6ba1 9 VMLVGDSGVGKTCLLVRFKD 28 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 89999999999999998754
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=89.28 E-value=0.13 Score=48.81 Aligned_cols=33 Identities=21% Similarity=0.110 Sum_probs=26.5
Q ss_pred ecccceeeEeCCeEEEEeCCCCCChhHHHHHHHh
Q 001400 150 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAG 183 (1085)
Q Consensus 150 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G 183 (1085)
.|+. ++..-.|.=+++.|+||+|||||...|.-
T Consensus 5 ~~H~-~~v~~~g~gvli~G~sg~GKS~la~~l~~ 37 (169)
T d1ko7a2 5 SLHG-VLVDVYGVGVLITGDSGIGKSETALELIK 37 (169)
T ss_dssp EEES-EEEEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEE-EEEEECCEEEEEEeCCCCCHHHHHHHHHH
Confidence 4555 45566789999999999999999877764
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=89.23 E-value=0.11 Score=53.95 Aligned_cols=22 Identities=36% Similarity=0.478 Sum_probs=20.2
Q ss_pred EEEEeCCCCCChhHHHHHHHhh
Q 001400 163 LTLLLGPPSSGKTTLLLALAGR 184 (1085)
Q Consensus 163 ~~~llGp~GsGKSTLL~~L~G~ 184 (1085)
.++|+|-|-+|||||+++|++-
T Consensus 4 ~~GivG~Pn~GKSTlf~~lt~~ 25 (278)
T d1jala1 4 KCGIVGLPNVGKSTLFNALTKA 25 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHCC
Confidence 5799999999999999999963
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.19 E-value=0.085 Score=50.04 Aligned_cols=21 Identities=29% Similarity=0.466 Sum_probs=19.0
Q ss_pred EEEEEccCCCChhHHHhhhhC
Q 001400 857 LTALVGVSGAGKTTLMDVLAG 877 (1085)
Q Consensus 857 ~~al~G~nGaGKSTLl~~l~g 877 (1085)
+++|+|..|+|||||++-+.+
T Consensus 4 Ki~viG~~~vGKTsLi~r~~~ 24 (171)
T d2erxa1 4 RVAVFGAGGVGKSSLVLRFVK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 579999999999999998776
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=89.17 E-value=0.074 Score=52.68 Aligned_cols=24 Identities=42% Similarity=0.441 Sum_probs=15.8
Q ss_pred CCeEEEEEccCCCChhHHHhhhhC
Q 001400 854 PGVLTALVGVSGAGKTTLMDVLAG 877 (1085)
Q Consensus 854 ~Ge~~al~G~nGaGKSTLl~~l~g 877 (1085)
...+++++||+|+||||.+-=|+.
T Consensus 11 ~p~vi~lvGptGvGKTTTiAKLA~ 34 (211)
T d1j8yf2 11 IPYVIMLVGVQGTGKATTAGKLAY 34 (211)
T ss_dssp SSEEEEEECSCCC----HHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 345789999999999999766664
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.16 E-value=0.087 Score=49.97 Aligned_cols=21 Identities=33% Similarity=0.572 Sum_probs=18.8
Q ss_pred EEEEeCCCCCChhHHHHHHHh
Q 001400 163 LTLLLGPPSSGKTTLLLALAG 183 (1085)
Q Consensus 163 ~~~llGp~GsGKSTLL~~L~G 183 (1085)
.++++|.+|+|||||++.+.+
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~ 28 (170)
T d1r2qa_ 8 KLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 368999999999999999874
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.10 E-value=0.071 Score=50.38 Aligned_cols=21 Identities=33% Similarity=0.474 Sum_probs=18.8
Q ss_pred EEEEEccCCCChhHHHhhhhC
Q 001400 857 LTALVGVSGAGKTTLMDVLAG 877 (1085)
Q Consensus 857 ~~al~G~nGaGKSTLl~~l~g 877 (1085)
+++++|.+|+|||||++.+.+
T Consensus 4 Ki~vvG~~~vGKTSli~~l~~ 24 (166)
T d1g16a_ 4 KILLIGDSGVGKSCLLVRFVE 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999998775
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=89.09 E-value=0.083 Score=50.70 Aligned_cols=21 Identities=43% Similarity=0.422 Sum_probs=19.0
Q ss_pred EEEEEccCCCChhHHHhhhhC
Q 001400 857 LTALVGVSGAGKTTLMDVLAG 877 (1085)
Q Consensus 857 ~~al~G~nGaGKSTLl~~l~g 877 (1085)
.+.|+||.||||||+-+.|+-
T Consensus 2 ~I~i~G~pGsGKsT~a~~La~ 22 (181)
T d2cdna1 2 RVLLLGPPGAGKGTQAVKLAE 22 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999984
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.06 E-value=0.088 Score=49.90 Aligned_cols=22 Identities=32% Similarity=0.628 Sum_probs=20.1
Q ss_pred EEEEEccCCCChhHHHhhhhCC
Q 001400 857 LTALVGVSGAGKTTLMDVLAGR 878 (1085)
Q Consensus 857 ~~al~G~nGaGKSTLl~~l~g~ 878 (1085)
+++|+|..|+|||||++.+.+.
T Consensus 3 Ki~lvG~~~vGKTsLi~~~~~~ 24 (168)
T d2gjsa1 3 KVLLLGAPGVGKSALARIFGGV 24 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCcCHHHHHHHHhCC
Confidence 4789999999999999999884
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=89.00 E-value=0.091 Score=49.82 Aligned_cols=21 Identities=24% Similarity=0.411 Sum_probs=18.8
Q ss_pred EEEEeCCCCCChhHHHHHHHh
Q 001400 163 LTLLLGPPSSGKTTLLLALAG 183 (1085)
Q Consensus 163 ~~~llGp~GsGKSTLL~~L~G 183 (1085)
.++|+|.+|+|||||++.+.+
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999999864
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=88.97 E-value=0.073 Score=53.46 Aligned_cols=22 Identities=36% Similarity=0.656 Sum_probs=20.1
Q ss_pred EEEEEccCCCChhHHHhhhhCC
Q 001400 857 LTALVGVSGAGKTTLMDVLAGR 878 (1085)
Q Consensus 857 ~~al~G~nGaGKSTLl~~l~g~ 878 (1085)
++||+|..+||||||++.|.+.
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~~ 28 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRGS 28 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCccHHHHHHHHHhh
Confidence 4899999999999999999873
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=88.97 E-value=0.099 Score=55.09 Aligned_cols=27 Identities=41% Similarity=0.587 Sum_probs=22.8
Q ss_pred CCeEEEEeCCCCCChhHHHHHHHhhhC
Q 001400 160 PSRLTLLLGPPSSGKTTLLLALAGRLG 186 (1085)
Q Consensus 160 ~G~~~~llGp~GsGKSTLL~~L~G~l~ 186 (1085)
|.-.+++.||||+|||.|.++|++.+.
T Consensus 122 ~~g~~l~~G~pG~GKT~la~ala~~~~ 148 (321)
T d1w44a_ 122 ASGMVIVTGKGNSGKTPLVHALGEALG 148 (321)
T ss_dssp ESEEEEEECSSSSCHHHHHHHHHHHHH
T ss_pred CCceEEEECCCCccHHHHHHHHHHHhc
Confidence 344667789999999999999999874
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.96 E-value=0.052 Score=51.77 Aligned_cols=20 Identities=30% Similarity=0.405 Sum_probs=17.6
Q ss_pred EEEeCCCCCChhHHHHHHHh
Q 001400 164 TLLLGPPSSGKTTLLLALAG 183 (1085)
Q Consensus 164 ~~llGp~GsGKSTLL~~L~G 183 (1085)
++|+|++|+|||||++.+.+
T Consensus 6 i~vvG~~~vGKTsli~~~~~ 25 (170)
T d1i2ma_ 6 LVLVGDGGTGKTTFVKRHLT 25 (170)
T ss_dssp EEEEECTTSSHHHHHHTTC-
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999998764
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=88.95 E-value=0.089 Score=51.93 Aligned_cols=24 Identities=33% Similarity=0.479 Sum_probs=21.9
Q ss_pred CCeEEEEEccCCCChhHHHhhhhC
Q 001400 854 PGVLTALVGVSGAGKTTLMDVLAG 877 (1085)
Q Consensus 854 ~Ge~~al~G~nGaGKSTLl~~l~g 877 (1085)
.|.+++|-|+-||||||+.+.|..
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~ 24 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVE 24 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999999999985
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=88.95 E-value=0.084 Score=52.21 Aligned_cols=22 Identities=41% Similarity=0.552 Sum_probs=20.3
Q ss_pred EEEEEccCCCChhHHHhhhhCC
Q 001400 857 LTALVGVSGAGKTTLMDVLAGR 878 (1085)
Q Consensus 857 ~~al~G~nGaGKSTLl~~l~g~ 878 (1085)
+++|.||.||||||+-+.|+..
T Consensus 5 iI~I~GppGSGKgT~ak~La~~ 26 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEA 26 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7899999999999999999863
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=88.88 E-value=0.086 Score=51.96 Aligned_cols=20 Identities=35% Similarity=0.667 Sum_probs=18.7
Q ss_pred EEEEEccCCCChhHHHhhhh
Q 001400 857 LTALVGVSGAGKTTLMDVLA 876 (1085)
Q Consensus 857 ~~al~G~nGaGKSTLl~~l~ 876 (1085)
++||.|..||||||+.+.|.
T Consensus 4 iIgITG~igSGKStv~~~l~ 23 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFT 23 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999886
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=88.84 E-value=0.097 Score=49.70 Aligned_cols=21 Identities=19% Similarity=0.344 Sum_probs=18.7
Q ss_pred EEEEeCCCCCChhHHHHHHHh
Q 001400 163 LTLLLGPPSSGKTTLLLALAG 183 (1085)
Q Consensus 163 ~~~llGp~GsGKSTLL~~L~G 183 (1085)
.++++|.+|+|||||++.+.+
T Consensus 6 Ki~lvG~~~vGKTsll~~~~~ 26 (169)
T d1x1ra1 6 KLVVVGDGGVGKSALTIQFFQ 26 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 367899999999999998875
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.83 E-value=0.1 Score=54.10 Aligned_cols=23 Identities=26% Similarity=0.491 Sum_probs=20.0
Q ss_pred EEEEeCCCCCChhHHHHHHHhhh
Q 001400 163 LTLLLGPPSSGKTTLLLALAGRL 185 (1085)
Q Consensus 163 ~~~llGp~GsGKSTLL~~L~G~l 185 (1085)
+++|-|++|||||||.+.|.-.+
T Consensus 29 iIGi~G~qGSGKSTl~~~l~~~L 51 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIYNHL 51 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHHHH
Confidence 78999999999999998886554
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=88.81 E-value=0.11 Score=52.13 Aligned_cols=27 Identities=30% Similarity=0.446 Sum_probs=24.0
Q ss_pred EEeCCeEEEEEccCCCChhHHHhhhhC
Q 001400 851 AFRPGVLTALVGVSGAGKTTLMDVLAG 877 (1085)
Q Consensus 851 ~i~~Ge~~al~G~nGaGKSTLl~~l~g 877 (1085)
-+++|+++.|.|++|+|||||..-++-
T Consensus 30 Gl~~G~l~~i~G~~G~GKT~~~l~~a~ 56 (258)
T d2i1qa2 30 GLESQSVTEFAGVFGSGKTQIMHQSCV 56 (258)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 478999999999999999999877763
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=88.73 E-value=0.22 Score=47.56 Aligned_cols=32 Identities=31% Similarity=0.230 Sum_probs=25.1
Q ss_pred eeeeeEEEeCCeEEEEEccCCCChhHHHhhhhC
Q 001400 845 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG 877 (1085)
Q Consensus 845 L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g 877 (1085)
++.--..+ .|.-+.|.|++|+|||||...|..
T Consensus 6 ~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~~ 37 (177)
T d1knxa2 6 IHGVLLEV-FGVGVLLTGRSGIGKSECALDLIN 37 (177)
T ss_dssp EEEEEEEE-TTEEEEEEESSSSSHHHHHHHHHT
T ss_pred EEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 44444445 788899999999999999877764
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.70 E-value=0.079 Score=50.11 Aligned_cols=21 Identities=24% Similarity=0.355 Sum_probs=19.2
Q ss_pred EEEEEccCCCChhHHHhhhhC
Q 001400 857 LTALVGVSGAGKTTLMDVLAG 877 (1085)
Q Consensus 857 ~~al~G~nGaGKSTLl~~l~g 877 (1085)
+++|+|..|+|||||++.+.+
T Consensus 6 Kv~liG~~~vGKTsLl~~~~~ 26 (167)
T d1xtqa1 6 KIAILGYRSVGKSSLTIQFVE 26 (167)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 689999999999999999765
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=88.65 E-value=0.11 Score=53.55 Aligned_cols=29 Identities=38% Similarity=0.527 Sum_probs=25.1
Q ss_pred eeEeCCeEEEEeCCCCCChhHHHHHHHhh
Q 001400 156 GIIRPSRLTLLLGPPSSGKTTLLLALAGR 184 (1085)
Q Consensus 156 ~~i~~G~~~~llGp~GsGKSTLL~~L~G~ 184 (1085)
+=++.|+++.+.||+|||||||+..++..
T Consensus 55 gG~~~g~i~e~~G~~~~GKT~l~l~~~~~ 83 (269)
T d1mo6a1 55 GGLPRGRVIEIYGPESSGKTTVALHAVAN 83 (269)
T ss_dssp SSBCSSSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCcccceeEEEecCCCcHHHHHHHHHHHH
Confidence 56899999999999999999997666643
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.61 E-value=0.097 Score=51.98 Aligned_cols=26 Identities=31% Similarity=0.443 Sum_probs=23.2
Q ss_pred CCeEEEEEccCCCChhHHHhhhhCCC
Q 001400 854 PGVLTALVGVSGAGKTTLMDVLAGRK 879 (1085)
Q Consensus 854 ~Ge~~al~G~nGaGKSTLl~~l~g~~ 879 (1085)
.|.+++|-|+-||||||+.+.|+-..
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L 27 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKL 27 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CeEEEEEECCCCCcHHHHHHHHHHHH
Confidence 58899999999999999999998643
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=88.57 E-value=0.1 Score=51.41 Aligned_cols=21 Identities=38% Similarity=0.294 Sum_probs=19.2
Q ss_pred EEEeCCCCCChhHHHHHHHhh
Q 001400 164 TLLLGPPSSGKTTLLLALAGR 184 (1085)
Q Consensus 164 ~~llGp~GsGKSTLL~~L~G~ 184 (1085)
++++|+++||||||++.|.+.
T Consensus 6 i~iiGhvd~GKSTL~~~Ll~~ 26 (204)
T d2c78a3 6 VGTIGHVDHGKTTLTAALTYV 26 (204)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEeCCCCcHHHHHHHHHHH
Confidence 789999999999999999754
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=88.38 E-value=0.086 Score=50.75 Aligned_cols=21 Identities=38% Similarity=0.597 Sum_probs=18.8
Q ss_pred EEEEEccCCCChhHHHhhhhC
Q 001400 857 LTALVGVSGAGKTTLMDVLAG 877 (1085)
Q Consensus 857 ~~al~G~nGaGKSTLl~~l~g 877 (1085)
+++|+|..|+|||||++.+.+
T Consensus 4 Kv~vvG~~~vGKSSLi~~l~~ 24 (184)
T d1vg8a_ 4 KVIILGDSGVGKTSLMNQYVN 24 (184)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999998875
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.28 E-value=0.087 Score=50.06 Aligned_cols=21 Identities=29% Similarity=0.357 Sum_probs=18.9
Q ss_pred EEEEEccCCCChhHHHhhhhC
Q 001400 857 LTALVGVSGAGKTTLMDVLAG 877 (1085)
Q Consensus 857 ~~al~G~nGaGKSTLl~~l~g 877 (1085)
+++|+|.+|+|||||++-+.+
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~ 27 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQ 27 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999997765
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=88.23 E-value=2.9 Score=42.40 Aligned_cols=23 Identities=22% Similarity=0.359 Sum_probs=20.4
Q ss_pred CeEEEEEccCCCChhHHHhhhhC
Q 001400 855 GVLTALVGVSGAGKTTLMDVLAG 877 (1085)
Q Consensus 855 Ge~~al~G~nGaGKSTLl~~l~g 877 (1085)
..+++|.|.-|.|||||.+.+..
T Consensus 44 ~~~v~I~GmgGiGKTtLA~~v~~ 66 (277)
T d2a5yb3 44 SFFLFLHGRAGSGKSVIASQALS 66 (277)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999998864
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.16 E-value=0.092 Score=50.01 Aligned_cols=21 Identities=24% Similarity=0.442 Sum_probs=18.8
Q ss_pred EEEEEccCCCChhHHHhhhhC
Q 001400 857 LTALVGVSGAGKTTLMDVLAG 877 (1085)
Q Consensus 857 ~~al~G~nGaGKSTLl~~l~g 877 (1085)
+++++|+.|+|||||++.+.+
T Consensus 5 KivvvG~~~vGKTsli~r~~~ 25 (173)
T d2a5ja1 5 KYIIIGDTGVGKSCLLLQFTD 25 (173)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHhc
Confidence 478999999999999998775
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.16 E-value=0.098 Score=49.69 Aligned_cols=22 Identities=36% Similarity=0.412 Sum_probs=18.5
Q ss_pred EEEEEccCCCChhHHHhhhhCC
Q 001400 857 LTALVGVSGAGKTTLMDVLAGR 878 (1085)
Q Consensus 857 ~~al~G~nGaGKSTLl~~l~g~ 878 (1085)
+++++|..|+|||||++.+.+.
T Consensus 5 Ki~vvG~~~vGKTsli~~~~~~ 26 (170)
T d1i2ma_ 5 KLVLVGDGGTGKTTFVKRHLTG 26 (170)
T ss_dssp EEEEEECTTSSHHHHHHTTC--
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 5799999999999999988763
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=88.12 E-value=0.093 Score=55.54 Aligned_cols=21 Identities=29% Similarity=0.369 Sum_probs=19.3
Q ss_pred EEEeCCCCCChhHHHHHHHhh
Q 001400 164 TLLLGPPSSGKTTLLLALAGR 184 (1085)
Q Consensus 164 ~~llGp~GsGKSTLL~~L~G~ 184 (1085)
+||+|-|-+|||||+|+|+|-
T Consensus 3 v~lvG~pn~GKStlfn~lt~~ 23 (319)
T d1wxqa1 3 IGVVGKPNVGKSTFFSAATLV 23 (319)
T ss_dssp EEEEECTTSSHHHHHHHHHC-
T ss_pred EeEECCCCCCHHHHHHHHHCC
Confidence 799999999999999999885
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.06 E-value=0.094 Score=49.53 Aligned_cols=22 Identities=23% Similarity=0.383 Sum_probs=19.6
Q ss_pred EEEEEccCCCChhHHHhhhhCC
Q 001400 857 LTALVGVSGAGKTTLMDVLAGR 878 (1085)
Q Consensus 857 ~~al~G~nGaGKSTLl~~l~g~ 878 (1085)
+++|+|..|+|||||++-+.+.
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~~~ 26 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 5799999999999999988763
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.03 E-value=0.11 Score=49.40 Aligned_cols=21 Identities=33% Similarity=0.531 Sum_probs=19.1
Q ss_pred EEEEEccCCCChhHHHhhhhC
Q 001400 857 LTALVGVSGAGKTTLMDVLAG 877 (1085)
Q Consensus 857 ~~al~G~nGaGKSTLl~~l~g 877 (1085)
+++|+|..|+|||||++.+.+
T Consensus 7 Ki~lvG~~~vGKTsLi~~l~~ 27 (171)
T d2ew1a1 7 KIVLIGNAGVGKTCLVRRFTQ 27 (171)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 479999999999999998875
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=87.99 E-value=0.11 Score=50.50 Aligned_cols=21 Identities=29% Similarity=0.515 Sum_probs=19.4
Q ss_pred EEEEEccCCCChhHHHhhhhC
Q 001400 857 LTALVGVSGAGKTTLMDVLAG 877 (1085)
Q Consensus 857 ~~al~G~nGaGKSTLl~~l~g 877 (1085)
.+.|+||.||||||+-+.|+-
T Consensus 8 rIiliG~PGSGKtT~a~~La~ 28 (189)
T d2ak3a1 8 RAAIMGAPGSGKGTVSSRITK 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999985
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=87.96 E-value=0.11 Score=53.48 Aligned_cols=30 Identities=47% Similarity=0.653 Sum_probs=27.2
Q ss_pred eeEeCCeEEEEeCCCCCChhHHHHHHHhhh
Q 001400 156 GIIRPSRLTLLLGPPSSGKTTLLLALAGRL 185 (1085)
Q Consensus 156 ~~i~~G~~~~llGp~GsGKSTLL~~L~G~l 185 (1085)
|=++.|++|-|-||+|||||||...++...
T Consensus 52 GGip~g~itei~G~~~sGKT~l~l~~~~~a 81 (268)
T d1xp8a1 52 GGIPRGRITEIYGPESGGKTTLALAIVAQA 81 (268)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCccCceEEEEecCCccchHHHHHHHHHHH
Confidence 578999999999999999999998888754
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.95 E-value=0.12 Score=49.50 Aligned_cols=22 Identities=27% Similarity=0.333 Sum_probs=19.3
Q ss_pred EEEEeCCCCCChhHHHHHHHhh
Q 001400 163 LTLLLGPPSSGKTTLLLALAGR 184 (1085)
Q Consensus 163 ~~~llGp~GsGKSTLL~~L~G~ 184 (1085)
.++++|++|+|||||++.+.+.
T Consensus 7 ki~vlG~~~vGKTsLi~~~~~~ 28 (175)
T d2bmja1 7 RLGVLGDARSGKSSLIHRFLTG 28 (175)
T ss_dssp EEEEECCTTTTHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999988653
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.91 E-value=0.11 Score=49.81 Aligned_cols=21 Identities=38% Similarity=0.439 Sum_probs=18.9
Q ss_pred EEEEEccCCCChhHHHhhhhC
Q 001400 857 LTALVGVSGAGKTTLMDVLAG 877 (1085)
Q Consensus 857 ~~al~G~nGaGKSTLl~~l~g 877 (1085)
.+.|+||.||||||+.+.|+-
T Consensus 4 rIvl~G~pGSGKtT~a~~La~ 24 (180)
T d1akya1 4 RMVLIGPPGAGKGTQAPNLQE 24 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999985
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.90 E-value=0.12 Score=49.26 Aligned_cols=22 Identities=41% Similarity=0.727 Sum_probs=19.8
Q ss_pred EEEEEccCCCChhHHHhhhhCC
Q 001400 857 LTALVGVSGAGKTTLMDVLAGR 878 (1085)
Q Consensus 857 ~~al~G~nGaGKSTLl~~l~g~ 878 (1085)
++.|+|..|+|||||++.+.+.
T Consensus 5 Kv~lvG~~~vGKTsLi~~~~~~ 26 (172)
T d2g3ya1 5 RVVLIGEQGVGKSTLANIFAGV 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4789999999999999999874
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.88 E-value=0.12 Score=48.79 Aligned_cols=20 Identities=25% Similarity=0.474 Sum_probs=18.4
Q ss_pred EEEeCCCCCChhHHHHHHHh
Q 001400 164 TLLLGPPSSGKTTLLLALAG 183 (1085)
Q Consensus 164 ~~llGp~GsGKSTLL~~L~G 183 (1085)
++|+|.+|+|||||++.+.+
T Consensus 6 ivvvG~~~vGKTsli~r~~~ 25 (167)
T d1c1ya_ 6 LVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 78999999999999999874
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.88 E-value=0.11 Score=50.41 Aligned_cols=30 Identities=33% Similarity=0.423 Sum_probs=22.0
Q ss_pred EEEEeCCCCCChhHHHHHHHhhhCCCCceee
Q 001400 163 LTLLLGPPSSGKTTLLLALAGRLGHHLQVSG 193 (1085)
Q Consensus 163 ~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G 193 (1085)
.++|+|.+|+|||||++-+. ......++-|
T Consensus 4 KivllG~~~vGKTsll~r~~-f~~~~~pTiG 33 (200)
T d1zcba2 4 KILLLGAGESGKSTFLKQMR-IIHGQDPTKG 33 (200)
T ss_dssp EEEEECSTTSSHHHHHHHHH-HHHSCCCCSS
T ss_pred EEEEECCCCCCHHHHHHHHh-cCCCCCCeee
Confidence 36899999999999999994 3333334455
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=87.87 E-value=0.13 Score=51.74 Aligned_cols=26 Identities=35% Similarity=0.517 Sum_probs=22.6
Q ss_pred EEeCCeEEEEEccCCCChhHHHhhhh
Q 001400 851 AFRPGVLTALVGVSGAGKTTLMDVLA 876 (1085)
Q Consensus 851 ~i~~Ge~~al~G~nGaGKSTLl~~l~ 876 (1085)
-+++|+++.|.|++|+|||||.--++
T Consensus 32 Glp~G~~~li~G~pGsGKT~~~lq~~ 57 (254)
T d1pzna2 32 GIETQAITEVFGEFGSGKTQLAHTLA 57 (254)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHH
T ss_pred CccCCEEEEEEcCCCCCHHHHHHHHH
Confidence 47899999999999999999976443
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=87.86 E-value=0.1 Score=55.21 Aligned_cols=23 Identities=35% Similarity=0.674 Sum_probs=20.6
Q ss_pred CeEEEEEccCCCChhHHHhhhhC
Q 001400 855 GVLTALVGVSGAGKTTLMDVLAG 877 (1085)
Q Consensus 855 Ge~~al~G~nGaGKSTLl~~l~g 877 (1085)
.-.+||.|+-|||||||+..|..
T Consensus 51 ~~~igitG~pGaGKSTli~~l~~ 73 (323)
T d2qm8a1 51 AIRVGITGVPGVGKSTTIDALGS 73 (323)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEeeeCCCCCCHHHHHHHHHH
Confidence 44789999999999999999985
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=87.85 E-value=0.1 Score=52.23 Aligned_cols=21 Identities=38% Similarity=0.419 Sum_probs=19.1
Q ss_pred EEEEccCCCChhHHHhhhhCC
Q 001400 858 TALVGVSGAGKTTLMDVLAGR 878 (1085)
Q Consensus 858 ~al~G~nGaGKSTLl~~l~g~ 878 (1085)
+-|.||+|+|||||.++|+..
T Consensus 48 lll~Gp~G~GKTtla~~iak~ 68 (231)
T d1iqpa2 48 LLFAGPPGVGKTTAALALARE 68 (231)
T ss_dssp EEEESCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 679999999999999999863
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=87.77 E-value=0.098 Score=54.78 Aligned_cols=22 Identities=32% Similarity=0.492 Sum_probs=20.4
Q ss_pred EEEEeCCCCCChhHHHHHHHhh
Q 001400 163 LTLLLGPPSSGKTTLLLALAGR 184 (1085)
Q Consensus 163 ~~~llGp~GsGKSTLL~~L~G~ 184 (1085)
.++|+|-|.||||||+++|++-
T Consensus 12 kiGivG~Pn~GKSTlfnalT~~ 33 (296)
T d1ni3a1 12 KTGIVGMPNVGKSTFFRAITKS 33 (296)
T ss_dssp EEEEEECSSSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 4899999999999999999974
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.76 E-value=0.12 Score=48.65 Aligned_cols=21 Identities=29% Similarity=0.338 Sum_probs=18.8
Q ss_pred EEEEEccCCCChhHHHhhhhC
Q 001400 857 LTALVGVSGAGKTTLMDVLAG 877 (1085)
Q Consensus 857 ~~al~G~nGaGKSTLl~~l~g 877 (1085)
+++|+|..|+|||||++-+.+
T Consensus 4 Kv~liG~~~vGKTsLl~~~~~ 24 (165)
T d1z06a1 4 KIIVIGDSNVGKTCLTYRFCA 24 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999998874
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.72 E-value=0.1 Score=49.26 Aligned_cols=21 Identities=24% Similarity=0.452 Sum_probs=18.7
Q ss_pred EEEEEccCCCChhHHHhhhhC
Q 001400 857 LTALVGVSGAGKTTLMDVLAG 877 (1085)
Q Consensus 857 ~~al~G~nGaGKSTLl~~l~g 877 (1085)
+++|+|..|+|||||++.+.+
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (166)
T d1z0fa1 6 KYIIIGDMGVGKSCLLHQFTE 26 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 479999999999999988775
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.71 E-value=0.12 Score=48.85 Aligned_cols=21 Identities=29% Similarity=0.479 Sum_probs=19.0
Q ss_pred EEEEEccCCCChhHHHhhhhC
Q 001400 857 LTALVGVSGAGKTTLMDVLAG 877 (1085)
Q Consensus 857 ~~al~G~nGaGKSTLl~~l~g 877 (1085)
+++|+|..|+|||||++-+..
T Consensus 6 Ki~lvG~~~vGKTsli~rl~~ 26 (167)
T d1z0ja1 6 KVCLLGDTGVGKSSIMWRFVE 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999998875
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.69 E-value=0.1 Score=49.13 Aligned_cols=21 Identities=24% Similarity=0.343 Sum_probs=19.1
Q ss_pred EEEEEccCCCChhHHHhhhhC
Q 001400 857 LTALVGVSGAGKTTLMDVLAG 877 (1085)
Q Consensus 857 ~~al~G~nGaGKSTLl~~l~g 877 (1085)
+++|+|..|+|||||++.+.+
T Consensus 2 Kv~vvG~~~vGKTsLi~r~~~ 22 (164)
T d1yzqa1 2 KLVFLGEQSVGKTSLITRFMY 22 (164)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 579999999999999998875
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=87.50 E-value=0.11 Score=49.31 Aligned_cols=23 Identities=30% Similarity=0.408 Sum_probs=20.2
Q ss_pred eEEEEEccCCCChhHHHhhhhCC
Q 001400 856 VLTALVGVSGAGKTTLMDVLAGR 878 (1085)
Q Consensus 856 e~~al~G~nGaGKSTLl~~l~g~ 878 (1085)
-.+.|+|++|+|||||++.+.+.
T Consensus 13 ~kIvlvG~~~vGKTSli~rl~~~ 35 (173)
T d1e0sa_ 13 MRILMLGLDAAGKTTILYKLKLG 35 (173)
T ss_dssp EEEEEEEETTSSHHHHHHHTTCC
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 35789999999999999999863
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.49 E-value=0.12 Score=49.82 Aligned_cols=20 Identities=35% Similarity=0.597 Sum_probs=18.4
Q ss_pred EEEeCCCCCChhHHHHHHHh
Q 001400 164 TLLLGPPSSGKTTLLLALAG 183 (1085)
Q Consensus 164 ~~llGp~GsGKSTLL~~L~G 183 (1085)
++|+|.+|+|||||++.+..
T Consensus 12 i~lvG~~~vGKTsLi~r~~~ 31 (185)
T d2atxa1 12 CVVVGDGAVGKTCLLMSYAN 31 (185)
T ss_dssp EEEEECTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhh
Confidence 79999999999999998864
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=87.41 E-value=0.14 Score=51.36 Aligned_cols=27 Identities=26% Similarity=0.426 Sum_probs=24.1
Q ss_pred EEeCCeEEEEEccCCCChhHHHhhhhC
Q 001400 851 AFRPGVLTALVGVSGAGKTTLMDVLAG 877 (1085)
Q Consensus 851 ~i~~Ge~~al~G~nGaGKSTLl~~l~g 877 (1085)
-+++|.++.|.|++|+|||||..-++-
T Consensus 22 Gi~~gsl~li~G~pGsGKT~l~~qia~ 48 (242)
T d1tf7a2 22 GFFKDSIILATGATGTGKTLLVSRFVE 48 (242)
T ss_dssp SEESSCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCcCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 478999999999999999999877764
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=87.34 E-value=0.12 Score=50.93 Aligned_cols=20 Identities=40% Similarity=0.667 Sum_probs=18.8
Q ss_pred EEEEEccCCCChhHHHhhhh
Q 001400 857 LTALVGVSGAGKTTLMDVLA 876 (1085)
Q Consensus 857 ~~al~G~nGaGKSTLl~~l~ 876 (1085)
++||.|..||||||..+.|.
T Consensus 5 iIgitG~igSGKStv~~~l~ 24 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFA 24 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCcCCHHHHHHHHH
Confidence 68999999999999999986
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=87.32 E-value=0.16 Score=53.64 Aligned_cols=27 Identities=37% Similarity=0.594 Sum_probs=23.5
Q ss_pred CCeEEEEeCCCCCChhHHHHHHHhhhC
Q 001400 160 PSRLTLLLGPPSSGKTTLLLALAGRLG 186 (1085)
Q Consensus 160 ~G~~~~llGp~GsGKSTLL~~L~G~l~ 186 (1085)
|...++++||+|+|||.|.+.||-.+.
T Consensus 51 p~~~~lf~Gp~GvGKT~lak~la~~l~ 77 (315)
T d1r6bx3 51 PVGSFLFAGPTGVGKTEVTVQLSKALG 77 (315)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CceEEEEECCCcchhHHHHHHHHhhcc
Confidence 455688999999999999999998764
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=87.28 E-value=0.12 Score=54.18 Aligned_cols=22 Identities=36% Similarity=0.668 Sum_probs=20.5
Q ss_pred EEEEeCCCCCChhHHHHHHHhh
Q 001400 163 LTLLLGPPSSGKTTLLLALAGR 184 (1085)
Q Consensus 163 ~~~llGp~GsGKSTLL~~L~G~ 184 (1085)
.++|+|.-+||||||+++|.|.
T Consensus 26 ~ivVvG~~ssGKSSliNaLlG~ 47 (306)
T d1jwyb_ 26 QIVVVGSQSSGKSSVLENIVGR 47 (306)
T ss_dssp EEEEEECSSSSHHHHHHHHHTS
T ss_pred eEEEEeCCCCCHHHHHHHHhCC
Confidence 4789999999999999999995
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=87.26 E-value=0.13 Score=53.09 Aligned_cols=28 Identities=36% Similarity=0.541 Sum_probs=25.2
Q ss_pred eEeCCeEEEEeCCCCCChhHHHHHHHhh
Q 001400 157 IIRPSRLTLLLGPPSSGKTTLLLALAGR 184 (1085)
Q Consensus 157 ~i~~G~~~~llGp~GsGKSTLL~~L~G~ 184 (1085)
.|-.|+..+|+|++|+|||||+..|+.-
T Consensus 39 PigrGQr~~I~g~~g~GKT~l~~~i~~~ 66 (289)
T d1xpua3 39 PIGRGQRGLIVAPPKAGKTMLLQNIAQS 66 (289)
T ss_dssp CCBTTCEEEEEECSSSSHHHHHHHHHHH
T ss_pred cccCCCeeeEeCCCCCCHHHHHHHHHHH
Confidence 4678999999999999999999999864
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=87.24 E-value=0.13 Score=50.60 Aligned_cols=24 Identities=33% Similarity=0.374 Sum_probs=21.2
Q ss_pred EEEEeCCCCCChhHHHHHHHhhhC
Q 001400 163 LTLLLGPPSSGKTTLLLALAGRLG 186 (1085)
Q Consensus 163 ~~~llGp~GsGKSTLL~~L~G~l~ 186 (1085)
-++|+|+..+|||||++.|.|...
T Consensus 10 ni~iiGhVd~GKSTL~~~L~~~~~ 33 (205)
T d2qn6a3 10 NIGVVGHVDHGKTTLVQAITGIWT 33 (205)
T ss_dssp EEEEECSTTSSHHHHHHHHHSCCC
T ss_pred EEEEEEccCCcHHHHHHHHHhhhc
Confidence 479999999999999999988543
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.16 E-value=0.11 Score=49.52 Aligned_cols=21 Identities=29% Similarity=0.507 Sum_probs=19.1
Q ss_pred EEEEEccCCCChhHHHhhhhC
Q 001400 857 LTALVGVSGAGKTTLMDVLAG 877 (1085)
Q Consensus 857 ~~al~G~nGaGKSTLl~~l~g 877 (1085)
+++++|..|+|||||++.+.+
T Consensus 9 Ki~vvG~~~vGKTsli~~l~~ 29 (177)
T d1x3sa1 9 KILIIGESGVGKSSLLLRFTD 29 (177)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999998876
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.05 E-value=0.13 Score=49.03 Aligned_cols=21 Identities=33% Similarity=0.370 Sum_probs=19.0
Q ss_pred EEEEEccCCCChhHHHhhhhC
Q 001400 857 LTALVGVSGAGKTTLMDVLAG 877 (1085)
Q Consensus 857 ~~al~G~nGaGKSTLl~~l~g 877 (1085)
++.|+|.+|+|||||++.+.+
T Consensus 4 KivvvG~~~vGKTsLi~~~~~ 24 (177)
T d1kmqa_ 4 KLVIVGDGACGKTCLLIVNSK 24 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 578999999999999988875
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=87.00 E-value=0.11 Score=54.66 Aligned_cols=24 Identities=29% Similarity=0.361 Sum_probs=20.5
Q ss_pred CeEEEEEccCCCChhHHHhhhhCC
Q 001400 855 GVLTALVGVSGAGKTTLMDVLAGR 878 (1085)
Q Consensus 855 Ge~~al~G~nGaGKSTLl~~l~g~ 878 (1085)
+.-+.++||+|+|||+|.++|+..
T Consensus 49 ~~~iLl~GPpG~GKT~lAkalA~~ 72 (309)
T d1ofha_ 49 PKNILMIGPTGVGKTEIARRLAKL 72 (309)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHhhc
Confidence 345578999999999999999974
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.90 E-value=0.13 Score=49.74 Aligned_cols=22 Identities=27% Similarity=0.466 Sum_probs=19.0
Q ss_pred EEEEeCCCCCChhHHHHHHHhh
Q 001400 163 LTLLLGPPSSGKTTLLLALAGR 184 (1085)
Q Consensus 163 ~~~llGp~GsGKSTLL~~L~G~ 184 (1085)
.++|+|++|+|||||++.+.+.
T Consensus 5 KvvllG~~~vGKTSli~r~~~~ 26 (191)
T d2ngra_ 5 KCVVVGDGAVGKTCLLISYTTN 26 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 3789999999999999888653
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=86.90 E-value=0.13 Score=56.22 Aligned_cols=45 Identities=24% Similarity=0.412 Sum_probs=33.7
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCcc
Q 001400 978 TIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPS 1029 (1085)
Q Consensus 978 ~iA~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~ 1029 (1085)
++..+|=.+|+||++.|.. |++++....+ .+.+|..|+.|.|-.+
T Consensus 219 ~l~~~lR~dPDvi~igEiR---d~~ta~~a~~----aa~tGhlV~tTlHa~~ 263 (401)
T d1p9ra_ 219 GLRAILRQDPDVVMVGEIR---DLETAQIAVQ----ASLTGHLVMSTLHTNT 263 (401)
T ss_dssp HHHHHGGGCCSEEEESCCC---SHHHHHHHHH----HHHTTCEEEEEECCSS
T ss_pred HHHHHHhhcCCEEEecCcC---ChHHHHHHHH----HHhcCCeEEEEeccCc
Confidence 3556677899999999986 5666555443 3557999999999654
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.89 E-value=0.14 Score=48.68 Aligned_cols=21 Identities=33% Similarity=0.540 Sum_probs=18.4
Q ss_pred EEEEEccCCCChhHHHhhhhC
Q 001400 857 LTALVGVSGAGKTTLMDVLAG 877 (1085)
Q Consensus 857 ~~al~G~nGaGKSTLl~~l~g 877 (1085)
+++|+|++|+|||||++-+.+
T Consensus 8 KI~vvG~~~vGKSSli~~~~~ 28 (174)
T d1wmsa_ 8 KVILLGDGGVGKSSLMNRYVT 28 (174)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 378999999999999987764
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.89 E-value=0.12 Score=48.78 Aligned_cols=21 Identities=29% Similarity=0.321 Sum_probs=18.7
Q ss_pred EEEEEccCCCChhHHHhhhhC
Q 001400 857 LTALVGVSGAGKTTLMDVLAG 877 (1085)
Q Consensus 857 ~~al~G~nGaGKSTLl~~l~g 877 (1085)
+++|+|..|+|||||++.+.+
T Consensus 5 KivlvG~~~vGKTsLi~r~~~ 25 (167)
T d1z08a1 5 KVVLLGEGCVGKTSLVLRYCE 25 (167)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 479999999999999998765
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.88 E-value=0.14 Score=51.73 Aligned_cols=23 Identities=35% Similarity=0.424 Sum_probs=20.2
Q ss_pred EEEEEccCCCChhHHHhhhhCCC
Q 001400 857 LTALVGVSGAGKTTLMDVLAGRK 879 (1085)
Q Consensus 857 ~~al~G~nGaGKSTLl~~l~g~~ 879 (1085)
.+.|.||+|+||||+.++|+...
T Consensus 54 ~lll~GPpG~GKTt~a~~la~~~ 76 (253)
T d1sxja2 54 AAMLYGPPGIGKTTAAHLVAQEL 76 (253)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 56799999999999999999643
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.62 E-value=0.15 Score=51.28 Aligned_cols=26 Identities=27% Similarity=0.314 Sum_probs=23.5
Q ss_pred EEeCCeEEEEEccCCCChhHHHhhhh
Q 001400 851 AFRPGVLTALVGVSGAGKTTLMDVLA 876 (1085)
Q Consensus 851 ~i~~Ge~~al~G~nGaGKSTLl~~l~ 876 (1085)
-+++|.++.|.|++|+|||||...++
T Consensus 33 Gip~G~~~~i~G~~GsGKT~lalq~~ 58 (258)
T d1v5wa_ 33 GIESMAITEAFGEFRTGKTQLSHTLC 58 (258)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHH
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHH
Confidence 47899999999999999999987665
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=86.55 E-value=0.14 Score=52.02 Aligned_cols=24 Identities=17% Similarity=0.421 Sum_probs=20.8
Q ss_pred CCeEEEEEccCCCChhHHHhhhhC
Q 001400 854 PGVLTALVGVSGAGKTTLMDVLAG 877 (1085)
Q Consensus 854 ~Ge~~al~G~nGaGKSTLl~~l~g 877 (1085)
.+.++.|.||.|+|||||++.++.
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~ 51 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGIN 51 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCcHHHHHHHHHH
Confidence 356789999999999999998874
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=86.49 E-value=0.14 Score=51.19 Aligned_cols=22 Identities=45% Similarity=0.534 Sum_probs=19.6
Q ss_pred EEEEeCCCCCChhHHHHHHHhh
Q 001400 163 LTLLLGPPSSGKTTLLLALAGR 184 (1085)
Q Consensus 163 ~~~llGp~GsGKSTLL~~L~G~ 184 (1085)
++.|-|.-||||||||+-|...
T Consensus 5 v~iitGFLGaGKTTll~~lL~~ 26 (222)
T d1nija1 5 VTLLTGFLGAGKTTLLRHILNE 26 (222)
T ss_dssp EEEEEESSSSSCHHHHHHHHHS
T ss_pred EEEEeeCCCCCHHHHHHHHHhc
Confidence 6899999999999999998753
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.40 E-value=0.13 Score=48.88 Aligned_cols=21 Identities=24% Similarity=0.461 Sum_probs=18.8
Q ss_pred EEEEEccCCCChhHHHhhhhC
Q 001400 857 LTALVGVSGAGKTTLMDVLAG 877 (1085)
Q Consensus 857 ~~al~G~nGaGKSTLl~~l~g 877 (1085)
+++|+|..|+|||||++-+.+
T Consensus 7 KI~lvG~~~vGKTsll~~~~~ 27 (174)
T d2bmea1 7 KFLVIGNAGTGKSCLLHQFIE 27 (174)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 379999999999999998764
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.39 E-value=0.15 Score=48.47 Aligned_cols=21 Identities=29% Similarity=0.359 Sum_probs=18.9
Q ss_pred EEEEEccCCCChhHHHhhhhC
Q 001400 857 LTALVGVSGAGKTTLMDVLAG 877 (1085)
Q Consensus 857 ~~al~G~nGaGKSTLl~~l~g 877 (1085)
+++|+|..|+|||||++-+.+
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~~ 28 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFIQ 28 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 579999999999999988765
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=86.37 E-value=0.15 Score=49.85 Aligned_cols=22 Identities=55% Similarity=0.848 Sum_probs=19.6
Q ss_pred EEEEEccCCCChhHHHhhhhCC
Q 001400 857 LTALVGVSGAGKTTLMDVLAGR 878 (1085)
Q Consensus 857 ~~al~G~nGaGKSTLl~~l~g~ 878 (1085)
+++|-|.-||||||+++.|...
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~ 23 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGA 23 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999853
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=86.33 E-value=0.11 Score=49.41 Aligned_cols=21 Identities=33% Similarity=0.434 Sum_probs=9.1
Q ss_pred EEEEEccCCCChhHHHhhhhC
Q 001400 857 LTALVGVSGAGKTTLMDVLAG 877 (1085)
Q Consensus 857 ~~al~G~nGaGKSTLl~~l~g 877 (1085)
+++|+|..|+|||||++.+.+
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~ 28 (173)
T d2fu5c1 8 KLLLIGDSGVGKTCVLFRFSE 28 (173)
T ss_dssp EEEEECCCCC-----------
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 479999999999999987775
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=86.15 E-value=0.15 Score=50.69 Aligned_cols=20 Identities=40% Similarity=0.576 Sum_probs=18.2
Q ss_pred EEEEeCCCCCChhHHHHHHH
Q 001400 163 LTLLLGPPSSGKTTLLLALA 182 (1085)
Q Consensus 163 ~~~llGp~GsGKSTLL~~L~ 182 (1085)
.++|+|.+|+|||||++-+.
T Consensus 8 KilllG~~~vGKTsll~~~~ 27 (221)
T d1azta2 8 RLLLLGAGESGKSTIVKQMR 27 (221)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 57999999999999999885
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.08 E-value=0.14 Score=48.37 Aligned_cols=21 Identities=19% Similarity=0.360 Sum_probs=18.7
Q ss_pred EEEEEccCCCChhHHHhhhhC
Q 001400 857 LTALVGVSGAGKTTLMDVLAG 877 (1085)
Q Consensus 857 ~~al~G~nGaGKSTLl~~l~g 877 (1085)
+++|+|..|+|||||++-+.+
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~~ 25 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFVS 25 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 579999999999999997765
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.08 E-value=0.16 Score=49.37 Aligned_cols=20 Identities=35% Similarity=0.546 Sum_probs=18.4
Q ss_pred EEEEccCCCChhHHHhhhhC
Q 001400 858 TALVGVSGAGKTTLMDVLAG 877 (1085)
Q Consensus 858 ~al~G~nGaGKSTLl~~l~g 877 (1085)
++|+|+.|+|||||++.+.+
T Consensus 9 ivvvG~~~vGKTsli~~l~~ 28 (194)
T d2bcgy1 9 LLLIGNSGVGKSCLLLRFSD 28 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHhh
Confidence 79999999999999998775
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.07 E-value=0.18 Score=52.04 Aligned_cols=24 Identities=50% Similarity=0.791 Sum_probs=21.8
Q ss_pred eEEEEEccCCCChhHHHhhhhCCC
Q 001400 856 VLTALVGVSGAGKTTLMDVLAGRK 879 (1085)
Q Consensus 856 e~~al~G~nGaGKSTLl~~l~g~~ 879 (1085)
-+++|+|+-++||||||+.|+|..
T Consensus 33 ~vvsi~G~~~sGKS~llN~l~~~~ 56 (277)
T d1f5na2 33 VVVAIVGLYRTGKSYLMNKLAGKK 56 (277)
T ss_dssp EEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred EEEEEECCCCCCHHHHHHHHcCCC
Confidence 378999999999999999999854
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=85.96 E-value=0.16 Score=48.63 Aligned_cols=21 Identities=33% Similarity=0.504 Sum_probs=18.2
Q ss_pred EEEEeCCCCCChhHHHHHHHh
Q 001400 163 LTLLLGPPSSGKTTLLLALAG 183 (1085)
Q Consensus 163 ~~~llGp~GsGKSTLL~~L~G 183 (1085)
.++++|.+|+|||||++.+..
T Consensus 4 KivliG~~~vGKTsli~r~~~ 24 (179)
T d1m7ba_ 4 KIVVVGDSQCGKTALLHVFAK 24 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 368999999999999987764
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=85.90 E-value=0.15 Score=53.25 Aligned_cols=22 Identities=32% Similarity=0.564 Sum_probs=20.5
Q ss_pred EEEEeCCCCCChhHHHHHHHhh
Q 001400 163 LTLLLGPPSSGKTTLLLALAGR 184 (1085)
Q Consensus 163 ~~~llGp~GsGKSTLL~~L~G~ 184 (1085)
.++|+|.-+||||||+|+|+|.
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~ 49 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGR 49 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTS
T ss_pred eEEEEcCCCCCHHHHHHHHhCC
Confidence 4889999999999999999995
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.89 E-value=0.17 Score=48.56 Aligned_cols=21 Identities=29% Similarity=0.330 Sum_probs=19.2
Q ss_pred EEEEEccCCCChhHHHhhhhC
Q 001400 857 LTALVGVSGAGKTTLMDVLAG 877 (1085)
Q Consensus 857 ~~al~G~nGaGKSTLl~~l~g 877 (1085)
+++|+|..|+|||||++-+.+
T Consensus 7 KivviG~~~vGKTsli~~~~~ 27 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTT 27 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999988775
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=85.86 E-value=0.28 Score=46.78 Aligned_cols=25 Identities=28% Similarity=0.256 Sum_probs=21.4
Q ss_pred eCCeEEEEEccCCCChhHHHhhhhC
Q 001400 853 RPGVLTALVGVSGAGKTTLMDVLAG 877 (1085)
Q Consensus 853 ~~Ge~~al~G~nGaGKSTLl~~l~g 877 (1085)
-.|.=+.|+|++|+|||||...|..
T Consensus 12 ~~g~gvl~~G~sG~GKStlal~l~~ 36 (176)
T d1kkma_ 12 IYGLGVLITGDSGVGKSETALELVQ 36 (176)
T ss_dssp ETTEEEEEECCTTSCHHHHHHHHHH
T ss_pred ECCEEEEEEeCCCCCHHHHHHHHHH
Confidence 4688899999999999999877764
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.79 E-value=0.14 Score=52.85 Aligned_cols=24 Identities=29% Similarity=0.447 Sum_probs=21.7
Q ss_pred eEEEEeCCCCCChhHHHHHHHhhh
Q 001400 162 RLTLLLGPPSSGKTTLLLALAGRL 185 (1085)
Q Consensus 162 ~~~~llGp~GsGKSTLL~~L~G~l 185 (1085)
-+++|+||-++|||||||.|.|..
T Consensus 33 ~vvsi~G~~~sGKS~llN~l~~~~ 56 (277)
T d1f5na2 33 VVVAIVGLYRTGKSYLMNKLAGKK 56 (277)
T ss_dssp EEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred EEEEEECCCCCCHHHHHHHHcCCC
Confidence 489999999999999999998853
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.70 E-value=0.17 Score=47.72 Aligned_cols=21 Identities=29% Similarity=0.373 Sum_probs=19.0
Q ss_pred EEEEEccCCCChhHHHhhhhC
Q 001400 857 LTALVGVSGAGKTTLMDVLAG 877 (1085)
Q Consensus 857 ~~al~G~nGaGKSTLl~~l~g 877 (1085)
+++++|..|+|||||++-+.+
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~ 28 (170)
T d1r2qa_ 8 KLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 579999999999999998874
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.62 E-value=0.16 Score=50.74 Aligned_cols=21 Identities=29% Similarity=0.422 Sum_probs=19.0
Q ss_pred EEEEccCCCChhHHHhhhhCC
Q 001400 858 TALVGVSGAGKTTLMDVLAGR 878 (1085)
Q Consensus 858 ~al~G~nGaGKSTLl~~l~g~ 878 (1085)
+.|.||+|+|||||.++|+..
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~ 56 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKE 56 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHH
Confidence 679999999999999999863
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.55 E-value=0.17 Score=52.34 Aligned_cols=20 Identities=20% Similarity=0.243 Sum_probs=18.1
Q ss_pred EEEEEccCCCChhHHHhhhh
Q 001400 857 LTALVGVSGAGKTTLMDVLA 876 (1085)
Q Consensus 857 ~~al~G~nGaGKSTLl~~l~ 876 (1085)
++||-|+.|||||||.+.|.
T Consensus 29 iIGi~G~qGSGKSTl~~~l~ 48 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIY 48 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHH
Confidence 78999999999999998775
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=85.31 E-value=0.19 Score=47.49 Aligned_cols=21 Identities=29% Similarity=0.368 Sum_probs=18.9
Q ss_pred EEEEEccCCCChhHHHhhhhC
Q 001400 857 LTALVGVSGAGKTTLMDVLAG 877 (1085)
Q Consensus 857 ~~al~G~nGaGKSTLl~~l~g 877 (1085)
++.|+|..|+|||||++-+.+
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999998764
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=85.20 E-value=0.22 Score=47.97 Aligned_cols=23 Identities=35% Similarity=0.375 Sum_probs=19.8
Q ss_pred EEEEeCCCCCChhHHHHHHHhhh
Q 001400 163 LTLLLGPPSSGKTTLLLALAGRL 185 (1085)
Q Consensus 163 ~~~llGp~GsGKSTLL~~L~G~l 185 (1085)
-++|+|..|+|||||++-+....
T Consensus 4 Kiv~lG~~~vGKTsll~r~~~~~ 26 (200)
T d2bcjq2 4 KLLLLGTGESGKSTFIKQMRIIH 26 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 36899999999999999997543
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=85.15 E-value=0.17 Score=47.94 Aligned_cols=21 Identities=29% Similarity=0.341 Sum_probs=18.8
Q ss_pred EEEEEccCCCChhHHHhhhhC
Q 001400 857 LTALVGVSGAGKTTLMDVLAG 877 (1085)
Q Consensus 857 ~~al~G~nGaGKSTLl~~l~g 877 (1085)
++.++|..|+|||||++-+.+
T Consensus 6 Ki~lvG~~~vGKTsll~~~~~ 26 (169)
T d1x1ra1 6 KLVVVGDGGVGKSALTIQFFQ 26 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999998775
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.14 E-value=0.19 Score=47.37 Aligned_cols=21 Identities=29% Similarity=0.423 Sum_probs=19.2
Q ss_pred EEEEEccCCCChhHHHhhhhC
Q 001400 857 LTALVGVSGAGKTTLMDVLAG 877 (1085)
Q Consensus 857 ~~al~G~nGaGKSTLl~~l~g 877 (1085)
++.|+|..|+|||||++-+.+
T Consensus 4 Ki~lvG~~~vGKTsli~r~~~ 24 (168)
T d2atva1 4 KLAIFGRAGVGKSALVVRFLT 24 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 578999999999999998876
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=85.04 E-value=0.17 Score=50.60 Aligned_cols=21 Identities=43% Similarity=0.653 Sum_probs=19.0
Q ss_pred EEEEccCCCChhHHHhhhhCC
Q 001400 858 TALVGVSGAGKTTLMDVLAGR 878 (1085)
Q Consensus 858 ~al~G~nGaGKSTLl~~l~g~ 878 (1085)
+-+.||.|+||||+.++|+..
T Consensus 38 ~L~~GPpGtGKT~lA~~la~~ 58 (238)
T d1in4a2 38 VLLAGPPGLGKTTLAHIIASE 58 (238)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 578999999999999999864
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=85.02 E-value=0.19 Score=48.55 Aligned_cols=20 Identities=25% Similarity=0.486 Sum_probs=18.3
Q ss_pred EEEEEccCCCChhHHHhhhh
Q 001400 857 LTALVGVSGAGKTTLMDVLA 876 (1085)
Q Consensus 857 ~~al~G~nGaGKSTLl~~l~ 876 (1085)
++.|+|.+|+|||||++-+.
T Consensus 4 KivllG~~~vGKTsll~r~~ 23 (200)
T d1zcba2 4 KILLLGAGESGKSTFLKQMR 23 (200)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 67899999999999999884
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.99 E-value=0.17 Score=47.79 Aligned_cols=21 Identities=43% Similarity=0.518 Sum_probs=18.3
Q ss_pred EEEEEccCCCChhHHHhhhhC
Q 001400 857 LTALVGVSGAGKTTLMDVLAG 877 (1085)
Q Consensus 857 ~~al~G~nGaGKSTLl~~l~g 877 (1085)
+++|+|+.|+|||||++.+.+
T Consensus 8 Ki~vvG~~~vGKTsli~~~~~ 28 (170)
T d2g6ba1 8 KVMLVGDSGVGKTCLLVRFKD 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 379999999999999997654
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.91 E-value=0.19 Score=48.26 Aligned_cols=21 Identities=33% Similarity=0.395 Sum_probs=18.8
Q ss_pred EEEEEccCCCChhHHHhhhhC
Q 001400 857 LTALVGVSGAGKTTLMDVLAG 877 (1085)
Q Consensus 857 ~~al~G~nGaGKSTLl~~l~g 877 (1085)
+++|+|..|+|||||++.+..
T Consensus 11 Ki~lvG~~~vGKTsLi~r~~~ 31 (185)
T d2atxa1 11 KCVVVGDGAVGKTCLLMSYAN 31 (185)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhh
Confidence 479999999999999988764
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=84.71 E-value=0.2 Score=48.71 Aligned_cols=21 Identities=43% Similarity=0.588 Sum_probs=19.6
Q ss_pred EEEEccCCCChhHHHhhhhCC
Q 001400 858 TALVGVSGAGKTTLMDVLAGR 878 (1085)
Q Consensus 858 ~al~G~nGaGKSTLl~~l~g~ 878 (1085)
+|++|.-.||||||++.|+|.
T Consensus 8 IaiiGhvd~GKSTL~~~L~g~ 28 (195)
T d1kk1a3 8 IGMVGHVDHGKTTLTKALTGV 28 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEeccCCcHHHHHHHHHhh
Confidence 799999999999999999984
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=84.70 E-value=0.25 Score=49.55 Aligned_cols=23 Identities=30% Similarity=0.327 Sum_probs=20.6
Q ss_pred eEEEEeCCCCCChhHHHHHHHhh
Q 001400 162 RLTLLLGPPSSGKTTLLLALAGR 184 (1085)
Q Consensus 162 ~~~~llGp~GsGKSTLL~~L~G~ 184 (1085)
.+++|.|+.||||||..+.|+..
T Consensus 2 ~iIgiTG~igSGKsTva~~l~e~ 24 (241)
T d1deka_ 2 KLIFLSGVKRSGKDTTADFIMSN 24 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 47899999999999999999754
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=84.55 E-value=0.34 Score=45.83 Aligned_cols=27 Identities=30% Similarity=0.185 Sum_probs=22.1
Q ss_pred EEeCCeEEEEEccCCCChhHHHhhhhC
Q 001400 851 AFRPGVLTALVGVSGAGKTTLMDVLAG 877 (1085)
Q Consensus 851 ~i~~Ge~~al~G~nGaGKSTLl~~l~g 877 (1085)
-.-.|.=+.|.|++|+|||||.-.|..
T Consensus 11 v~~~g~gvli~G~sg~GKS~la~~l~~ 37 (169)
T d1ko7a2 11 VDVYGVGVLITGDSGIGKSETALELIK 37 (169)
T ss_dssp EEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred EEECCEEEEEEeCCCCCHHHHHHHHHH
Confidence 344688899999999999999866653
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=84.35 E-value=0.21 Score=51.48 Aligned_cols=27 Identities=30% Similarity=0.347 Sum_probs=24.5
Q ss_pred EEeCCeEEEEEccCCCChhHHHhhhhC
Q 001400 851 AFRPGVLTALVGVSGAGKTTLMDVLAG 877 (1085)
Q Consensus 851 ~i~~Ge~~al~G~nGaGKSTLl~~l~g 877 (1085)
.|-.|+..+|+|++|+|||||+..|+.
T Consensus 39 PigrGQr~~I~g~~g~GKT~l~~~i~~ 65 (289)
T d1xpua3 39 PIGRGQRGLIVAPPKAGKTMLLQNIAQ 65 (289)
T ss_dssp CCBTTCEEEEEECSSSSHHHHHHHHHH
T ss_pred cccCCCeeeEeCCCCCCHHHHHHHHHH
Confidence 456799999999999999999999885
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.24 E-value=0.19 Score=47.97 Aligned_cols=21 Identities=19% Similarity=0.365 Sum_probs=18.9
Q ss_pred EEEEEccCCCChhHHHhhhhC
Q 001400 857 LTALVGVSGAGKTTLMDVLAG 877 (1085)
Q Consensus 857 ~~al~G~nGaGKSTLl~~l~g 877 (1085)
.++++|..|+|||||++-+.+
T Consensus 7 ki~vlG~~~vGKTsLi~~~~~ 27 (175)
T d2bmja1 7 RLGVLGDARSGKSSLIHRFLT 27 (175)
T ss_dssp EEEEECCTTTTHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999997765
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=84.20 E-value=0.24 Score=50.72 Aligned_cols=24 Identities=38% Similarity=0.440 Sum_probs=21.2
Q ss_pred EEEEeCCCCCChhHHHHHHHhhhC
Q 001400 163 LTLLLGPPSSGKTTLLLALAGRLG 186 (1085)
Q Consensus 163 ~~~llGp~GsGKSTLL~~L~G~l~ 186 (1085)
=.+|+||||.|||++...|+-++.
T Consensus 41 n~lLVG~~GvGKTalv~~la~ri~ 64 (268)
T d1r6bx2 41 NPLLVGESGVGKTAIAEGLAWRIV 64 (268)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CcEEECCCCCcHHHHHHHHHHHHH
Confidence 457999999999999999998763
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.16 E-value=0.23 Score=46.72 Aligned_cols=21 Identities=24% Similarity=0.398 Sum_probs=18.9
Q ss_pred EEEEEccCCCChhHHHhhhhC
Q 001400 857 LTALVGVSGAGKTTLMDVLAG 877 (1085)
Q Consensus 857 ~~al~G~nGaGKSTLl~~l~g 877 (1085)
+++|+|..|+|||||++-+..
T Consensus 5 KivvvG~~~vGKTsli~r~~~ 25 (167)
T d1c1ya_ 5 KLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 478999999999999998775
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=84.08 E-value=0.23 Score=49.15 Aligned_cols=49 Identities=8% Similarity=0.127 Sum_probs=33.5
Q ss_pred hCCCcEeEEeCCCCCC-CHHHHHHHHHHHHHHHhccCCEEEEEEecChhHH
Q 001400 322 VGPARVLFMDEISNGL-DSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEA 371 (1085)
Q Consensus 322 ~~~p~vlllDEptsgL-D~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~ 371 (1085)
+...+++++|+.=.=. +......++..+..... .++.+|++...+..+.
T Consensus 95 ~~~~dll~iDDi~~i~~~~~~~~~lf~lin~~~~-~~~~iiits~~~p~~l 144 (213)
T d1l8qa2 95 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYL-LEKQIILASDRHPQKL 144 (213)
T ss_dssp HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHH-TTCEEEEEESSCGGGC
T ss_pred HhhccchhhhhhhhhcCchHHHHHHHHHHHHHhh-ccceEEEecCCcchhc
Confidence 4567999999984432 46667777777776554 4677777776665544
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=84.07 E-value=0.22 Score=49.46 Aligned_cols=20 Identities=25% Similarity=0.466 Sum_probs=18.2
Q ss_pred EEEEEccCCCChhHHHhhhh
Q 001400 857 LTALVGVSGAGKTTLMDVLA 876 (1085)
Q Consensus 857 ~~al~G~nGaGKSTLl~~l~ 876 (1085)
++.|+|.+|+|||||++-+.
T Consensus 8 KilllG~~~vGKTsll~~~~ 27 (221)
T d1azta2 8 RLLLLGAGESGKSTIVKQMR 27 (221)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 67999999999999999875
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=83.89 E-value=0.18 Score=50.54 Aligned_cols=21 Identities=48% Similarity=0.608 Sum_probs=18.9
Q ss_pred EEEEccCCCChhHHHhhhhCC
Q 001400 858 TALVGVSGAGKTTLMDVLAGR 878 (1085)
Q Consensus 858 ~al~G~nGaGKSTLl~~l~g~ 878 (1085)
+-+.||.|+|||||.+++++.
T Consensus 38 ~Ll~GPpG~GKTtla~~la~~ 58 (239)
T d1ixsb2 38 LLLFGPPGLGKTTLAHVIAHE 58 (239)
T ss_dssp EEEECCTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999974
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=83.86 E-value=0.23 Score=47.46 Aligned_cols=21 Identities=43% Similarity=0.553 Sum_probs=18.2
Q ss_pred EEEEEccCCCChhHHHhhhhC
Q 001400 857 LTALVGVSGAGKTTLMDVLAG 877 (1085)
Q Consensus 857 ~~al~G~nGaGKSTLl~~l~g 877 (1085)
++.++|.+|+|||||++-+..
T Consensus 4 KivliG~~~vGKTsli~r~~~ 24 (179)
T d1m7ba_ 4 KIVVVGDSQCGKTALLHVFAK 24 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 578999999999999986654
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.83 E-value=0.27 Score=49.19 Aligned_cols=26 Identities=23% Similarity=0.241 Sum_probs=22.8
Q ss_pred eEEEEeCCCCCChhHHHHHHHhhhCC
Q 001400 162 RLTLLLGPPSSGKTTLLLALAGRLGH 187 (1085)
Q Consensus 162 ~~~~llGp~GsGKSTLL~~L~G~l~~ 187 (1085)
++++|=|+-||||||+++.|+-.+..
T Consensus 3 k~IviEG~~GsGKST~~~~L~~~l~~ 28 (241)
T d2ocpa1 3 RRLSIEGNIAVGKSTFVKLLTKTYPE 28 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCTT
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHhh
Confidence 47889999999999999999977653
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=83.56 E-value=0.27 Score=48.33 Aligned_cols=24 Identities=29% Similarity=0.367 Sum_probs=21.6
Q ss_pred EEEEeCCCCCChhHHHHHHHhhhC
Q 001400 163 LTLLLGPPSSGKTTLLLALAGRLG 186 (1085)
Q Consensus 163 ~~~llGp~GsGKSTLL~~L~G~l~ 186 (1085)
-+++.||+|+||||+.++++..+-
T Consensus 26 ~lLl~Gp~G~GKtt~a~~~a~~l~ 49 (207)
T d1a5ta2 26 ALLIQALPGMGDDALIYALSRYLL 49 (207)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHHHhcc
Confidence 478999999999999999998764
|
| >d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=83.28 E-value=0.29 Score=47.44 Aligned_cols=23 Identities=39% Similarity=0.658 Sum_probs=20.7
Q ss_pred EEEeCCCCCChhHHHHHHHhhhC
Q 001400 164 TLLLGPPSSGKTTLLLALAGRLG 186 (1085)
Q Consensus 164 ~~llGp~GsGKSTLL~~L~G~l~ 186 (1085)
.+|+||||.|||++...|+-++.
T Consensus 46 ~lLvG~pGVGKTalv~~LA~ri~ 68 (195)
T d1jbka_ 46 PVLIGEPGVGKTAIVEGLAQRII 68 (195)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEecCCcccHHHHHHHHHHHH
Confidence 57999999999999999998763
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=82.84 E-value=0.28 Score=50.20 Aligned_cols=22 Identities=45% Similarity=0.460 Sum_probs=19.3
Q ss_pred EEEEeCCCCCChhHHHHHHHhh
Q 001400 163 LTLLLGPPSSGKTTLLLALAGR 184 (1085)
Q Consensus 163 ~~~llGp~GsGKSTLL~~L~G~ 184 (1085)
-++|+|+.|||||||..+|...
T Consensus 4 Nv~iiGh~~~GKTtL~e~ll~~ 25 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEALLYK 25 (267)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHHHH
Confidence 4799999999999999999543
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.70 E-value=0.27 Score=47.39 Aligned_cols=21 Identities=29% Similarity=0.330 Sum_probs=18.7
Q ss_pred EEEEEccCCCChhHHHhhhhC
Q 001400 857 LTALVGVSGAGKTTLMDVLAG 877 (1085)
Q Consensus 857 ~~al~G~nGaGKSTLl~~l~g 877 (1085)
+++|+|..|+|||||++-+.+
T Consensus 5 KvvllG~~~vGKTSli~r~~~ 25 (191)
T d2ngra_ 5 KCVVVGDGAVGKTCLLISYTT 25 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999987765
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=82.67 E-value=0.33 Score=47.21 Aligned_cols=22 Identities=36% Similarity=0.360 Sum_probs=20.0
Q ss_pred EEEeCCCCCChhHHHHHHHhhh
Q 001400 164 TLLLGPPSSGKTTLLLALAGRL 185 (1085)
Q Consensus 164 ~~llGp~GsGKSTLL~~L~G~l 185 (1085)
++|+|+..+|||||++.|.+.+
T Consensus 6 i~iiGHvd~GKSTL~~~l~~~~ 27 (196)
T d1d2ea3 6 VGTIGHVDHGKTTLTAAITKIL 27 (196)
T ss_dssp EEEESSTTSSHHHHHHHHHHHH
T ss_pred EEEEeCCCCcHHHHHHHHHHHH
Confidence 7899999999999999998754
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=82.58 E-value=0.28 Score=49.63 Aligned_cols=24 Identities=29% Similarity=0.285 Sum_probs=20.8
Q ss_pred CeEEEEEccCCCChhHHHhhhhCC
Q 001400 855 GVLTALVGVSGAGKTTLMDVLAGR 878 (1085)
Q Consensus 855 Ge~~al~G~nGaGKSTLl~~l~g~ 878 (1085)
...+.|.||.|+||||+++.|+..
T Consensus 43 ~~~lll~GppGtGKT~l~~~l~~~ 66 (276)
T d1fnna2 43 YPRATLLGRPGTGKTVTLRKLWEL 66 (276)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 346789999999999999999864
|
| >d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Escherichia coli, RepD [TaxId: 562]
Probab=82.51 E-value=0.21 Score=51.76 Aligned_cols=20 Identities=35% Similarity=0.471 Sum_probs=15.2
Q ss_pred EEEeCCCCCChhHHH-HHHHh
Q 001400 164 TLLLGPPSSGKTTLL-LALAG 183 (1085)
Q Consensus 164 ~~llGp~GsGKSTLL-~~L~G 183 (1085)
++|.|++||||||.| ..++-
T Consensus 17 ~lI~g~aGTGKTt~l~~rv~~ 37 (306)
T d1uaaa1 17 CLVLAGAGSGKTRVITNKIAH 37 (306)
T ss_dssp EEECCCTTSCHHHHHHHHHHH
T ss_pred EEEEeeCCccHHHHHHHHHHH
Confidence 689999999999764 44443
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=82.32 E-value=0.28 Score=51.66 Aligned_cols=61 Identities=16% Similarity=0.257 Sum_probs=37.9
Q ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHH
Q 001400 968 GLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDI 1032 (1085)
Q Consensus 968 ~LS~Gqrqrl~iA~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~ 1032 (1085)
.++..+.+++....-+...|-++..=.- |......+.+..+...+.+..|+.++...+.++
T Consensus 197 ~~~~~e~~~~~~~~~~~~kP~~~v~Nk~----d~~~~e~~~~~~~~~~~~~~~vi~~sa~~E~~L 257 (319)
T d1wxqa1 197 KWSQDDLLAFASEIRRVNKPMVIAANKA----DAASDEQIKRLVREEEKRGYIVIPTSAAAELTL 257 (319)
T ss_dssp GCCHHHHHHHHHHHHHHHSCEEEEEECG----GGSCHHHHHHHHHHHHHTTCEEEEECHHHHHHH
T ss_pred hcCHHHHHHhHHHhhhhcCchhhhcccc----cchhhHHHHHHHHHHhhcCCEEEEecHHHHHHH
Confidence 4678888888887778888877664321 112234444555555556778887777654433
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=81.97 E-value=0.31 Score=50.86 Aligned_cols=23 Identities=26% Similarity=0.624 Sum_probs=20.9
Q ss_pred EEEEEccCCCChhHHHhhhhCCC
Q 001400 857 LTALVGVSGAGKTTLMDVLAGRK 879 (1085)
Q Consensus 857 ~~al~G~nGaGKSTLl~~l~g~~ 879 (1085)
.++++|.-.||||||++.|.|..
T Consensus 26 ~ivVvG~~ssGKSSliNaLlG~~ 48 (306)
T d1jwyb_ 26 QIVVVGSQSSGKSSVLENIVGRD 48 (306)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999954
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=81.86 E-value=0.31 Score=50.59 Aligned_cols=23 Identities=35% Similarity=0.631 Sum_probs=20.8
Q ss_pred EEEEEccCCCChhHHHhhhhCCC
Q 001400 857 LTALVGVSGAGKTTLMDVLAGRK 879 (1085)
Q Consensus 857 ~~al~G~nGaGKSTLl~~l~g~~ 879 (1085)
.++++|.-.||||||++.|+|..
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~~ 50 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999953
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=81.82 E-value=0.28 Score=49.59 Aligned_cols=22 Identities=32% Similarity=0.345 Sum_probs=19.5
Q ss_pred EEEEEccCCCChhHHHhhhhCC
Q 001400 857 LTALVGVSGAGKTTLMDVLAGR 878 (1085)
Q Consensus 857 ~~al~G~nGaGKSTLl~~l~g~ 878 (1085)
-+.|.||.|+|||+|.+.|+..
T Consensus 42 ~vLL~GppGtGKT~la~alA~~ 63 (246)
T d1d2na_ 42 SVLLEGPPHSGKTALAAKIAEE 63 (246)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhhc
Confidence 3679999999999999999963
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=81.71 E-value=0.29 Score=48.47 Aligned_cols=71 Identities=18% Similarity=0.258 Sum_probs=39.2
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCCCchHHHHHHH
Q 001400 986 NPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGSKSCELIKYF 1065 (1085)
Q Consensus 986 ~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~~~~~~~~~~~ 1065 (1085)
+.+++++||.- ++...++..+...+.+. .....+++++++.+. +... +..+ -.++.+.++. ..++.+|.
T Consensus 101 ~~kviiiDe~d-~~~~~~~~~ll~~~e~~-~~~~~~i~~~~~~~~-i~~~-----l~sr-~~~i~~~~~~--~~~i~~~l 169 (224)
T d1sxjb2 101 KHKIVILDEAD-SMTAGAQQALRRTMELY-SNSTRFAFACNQSNK-IIEP-----LQSQ-CAILRYSKLS--DEDVLKRL 169 (224)
T ss_dssp CCEEEEEESGG-GSCHHHHHTTHHHHHHT-TTTEEEEEEESCGGG-SCHH-----HHTT-SEEEECCCCC--HHHHHHHH
T ss_pred ceEEEEEeccc-ccchhHHHHHhhhcccc-ccceeeeeccCchhh-hhhH-----HHHH-HHHhhhcccc--hhhhHHHH
Confidence 36799999976 45555565565555543 235567777777552 2111 1112 3456666664 34555555
Q ss_pred Hh
Q 001400 1066 EV 1067 (1085)
Q Consensus 1066 ~~ 1067 (1085)
..
T Consensus 170 ~~ 171 (224)
T d1sxjb2 170 LQ 171 (224)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=81.48 E-value=0.34 Score=49.73 Aligned_cols=21 Identities=24% Similarity=0.115 Sum_probs=18.8
Q ss_pred eEEEEeCCCCCChhHHHHHHH
Q 001400 162 RLTLLLGPPSSGKTTLLLALA 182 (1085)
Q Consensus 162 ~~~~llGp~GsGKSTLL~~L~ 182 (1085)
+-++|+|+.|||||||..+|.
T Consensus 7 Rni~i~gh~~~GKTtL~e~ll 27 (276)
T d2bv3a2 7 RNIGIAAHIDAGKTTTTERIL 27 (276)
T ss_dssp EEEEEEECTTSCHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHH
Confidence 347999999999999999995
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=81.34 E-value=0.3 Score=49.05 Aligned_cols=42 Identities=21% Similarity=0.252 Sum_probs=30.8
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCcc
Q 001400 986 NPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPS 1029 (1085)
Q Consensus 986 ~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~ 1029 (1085)
+.+++++||.-. |...+...+.+.+.+. .....+|+++++++
T Consensus 131 ~~~iiiide~d~-l~~~~~~~l~~~~e~~-~~~~~~Il~tn~~~ 172 (252)
T d1sxje2 131 RYKCVIINEANS-LTKDAQAALRRTMEKY-SKNIRLIMVCDSMS 172 (252)
T ss_dssp CCEEEEEECTTS-SCHHHHHHHHHHHHHS-TTTEEEEEEESCSC
T ss_pred CceEEEeccccc-cccccchhhhcccccc-cccccceeeecccc
Confidence 467999999965 8888877777777653 23455788999875
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| >d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Bacillus stearothermophilus, PcrA [TaxId: 1422]
Probab=81.28 E-value=0.25 Score=51.69 Aligned_cols=25 Identities=24% Similarity=0.321 Sum_probs=18.1
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHH
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLL 178 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL 178 (1085)
..|+++.. | -++|.|++||||||.|
T Consensus 17 ~~~v~~~~-----g-~~lV~g~aGSGKTt~l 41 (318)
T d1pjra1 17 QEAVRTTE-----G-PLLIMAGAGSGKTRVL 41 (318)
T ss_dssp HHHHHCCS-----S-CEEEEECTTSCHHHHH
T ss_pred HHHHhCCC-----C-CEEEEecCCccHHHHH
Confidence 34666532 3 3789999999999765
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| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=80.79 E-value=0.43 Score=47.82 Aligned_cols=25 Identities=32% Similarity=0.340 Sum_probs=21.6
Q ss_pred EEEEeCCCCCChhHHHHHHHhhhCC
Q 001400 163 LTLLLGPPSSGKTTLLLALAGRLGH 187 (1085)
Q Consensus 163 ~~~llGp~GsGKSTLL~~L~G~l~~ 187 (1085)
.+++-||+|+||||+.++++..+..
T Consensus 36 ~~Ll~Gp~G~GKtt~a~~~~~~l~~ 60 (239)
T d1njfa_ 36 AYLFSGTRGVGKTSIARLLAKGLNC 60 (239)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHC
T ss_pred eEEEECCCCCcHHHHHHHHHHHhcC
Confidence 5688899999999999999887643
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| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=80.57 E-value=0.33 Score=47.99 Aligned_cols=41 Identities=10% Similarity=0.202 Sum_probs=27.5
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCcc
Q 001400 987 PSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPS 1029 (1085)
Q Consensus 987 p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~ 1029 (1085)
.+++++||.- .+....+..+.+.|.+.. ...-+++++++++
T Consensus 100 ~kiiiiDe~d-~~~~~~~~~Ll~~le~~~-~~~~~~~~~~~~~ 140 (227)
T d1sxjc2 100 FKLIILDEAD-AMTNAAQNALRRVIERYT-KNTRFCVLANYAH 140 (227)
T ss_dssp CEEEEETTGG-GSCHHHHHHHHHHHHHTT-TTEEEEEEESCGG
T ss_pred eEEEEEeccc-cchhhHHHHHHHHhhhcc-cceeeccccCcHH
Confidence 4699999975 677778888887777642 2334555665543
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| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=80.52 E-value=0.37 Score=50.66 Aligned_cols=25 Identities=28% Similarity=0.308 Sum_probs=21.5
Q ss_pred CCeEEEEEccCCCChhHHHhhhhCC
Q 001400 854 PGVLTALVGVSGAGKTTLMDVLAGR 878 (1085)
Q Consensus 854 ~Ge~~al~G~nGaGKSTLl~~l~g~ 878 (1085)
|...+.++||+|+|||.|.+.|+..
T Consensus 51 p~~~~lf~Gp~GvGKT~lak~la~~ 75 (315)
T d1r6bx3 51 PVGSFLFAGPTGVGKTEVTVQLSKA 75 (315)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CceEEEEECCCcchhHHHHHHHHhh
Confidence 4456789999999999999999963
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| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=80.31 E-value=0.38 Score=45.93 Aligned_cols=21 Identities=24% Similarity=0.378 Sum_probs=18.8
Q ss_pred EEEEEccCCCChhHHHhhhhC
Q 001400 857 LTALVGVSGAGKTTLMDVLAG 877 (1085)
Q Consensus 857 ~~al~G~nGaGKSTLl~~l~g 877 (1085)
++.|+|..|+|||||++-+..
T Consensus 4 KivllG~~~vGKTsl~~r~~~ 24 (195)
T d1svsa1 4 KLLLLGAGESGKSTIVKQMKI 24 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhh
Confidence 579999999999999998864
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| >d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain species: Pseudomonas syringae pv. tomato [TaxId: 323]
Probab=80.13 E-value=0.44 Score=47.28 Aligned_cols=22 Identities=32% Similarity=0.282 Sum_probs=19.6
Q ss_pred EEEeCCCCCChhHHHHHHHhhh
Q 001400 164 TLLLGPPSSGKTTLLLALAGRL 185 (1085)
Q Consensus 164 ~~llGp~GsGKSTLL~~L~G~l 185 (1085)
++++|+..+|||||+..|....
T Consensus 12 i~viGHVd~GKSTL~~~Ll~~~ 33 (222)
T d1zunb3 12 FLTCGNVDDGKSTLIGRLLHDS 33 (222)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEEcCCCCCHHHHHHHHHHHc
Confidence 7899999999999999997543
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| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=80.03 E-value=0.32 Score=50.67 Aligned_cols=23 Identities=26% Similarity=0.541 Sum_probs=20.8
Q ss_pred eEEEEEccCCCChhHHHhhhhCC
Q 001400 856 VLTALVGVSGAGKTTLMDVLAGR 878 (1085)
Q Consensus 856 e~~al~G~nGaGKSTLl~~l~g~ 878 (1085)
=.+||+|-..+|||||+++|++-
T Consensus 11 ~kiGivG~Pn~GKSTlfnalT~~ 33 (296)
T d1ni3a1 11 LKTGIVGMPNVGKSTFFRAITKS 33 (296)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHCC
Confidence 35899999999999999999973
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