Citrus Sinensis ID: 001419

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080
MAGIASEESGVGRSVEGISSGQRCQSGEALAEWRSSEQVENGTPSTSPPYWDTDDDDDGWPKPSELYGKYTWRIEKFSQISKRELRSNAFEVGGYKWYILIYPQGCDVCNHLSLFLCVANHDKLLPGWSHFAQFTIAVVNRDPKKSKYSDTLHRFWKKEHDWGWKKFMELSKVSDGFKDGDTLIIKAQVQVISFCAFWLGIDQNARRRMSREKTDAILKVVVKHFFIEKEVTSTLVMDSLYSGLKALEGQSKSKKTKAKLLDAEDTPPPIVHVENDMFVLVDDVLLLLERAALEPLPPKDEKGPQNRTKESNSGEDFNKDSIERDERRLTELGRRTVEIFVLAHIFSNKIEVAYQEAVALKRQEELIREEEAAWLAESEQKAKRGAAEKEKKAKKKLAKQKRNNRKGKEKKREERSSMALSDRLEDENPSDEKKEFIVEDAQPLPEKPDVLEDVSDVSDSVDGGAEVLQPDSEDRDTSPVNWDTDASEVIPPTEASSSGVCNLSSVPNGVTEKRNASVMDDSSSTCSTDSVPSVVMYGPYKGNSLANYQNQKSPSRGKNQRGKSTYDGNVWATETENQPSRPAADAGEHNDISESSKSGEYESEAVSSLQHQAKLPEQNVAKEEASSPQKKSSMKDPVDTERPKEKTAAVPSSPRSPPRNLQSPVQLKSVPKSIATADPVPQVKSLSNGQQQTDQVAESCTSSPGAGVCKPEIQKAAASKQTEKLMDPQVPNMSRPSSAPLVPGPRPTAPVVSVVHTAPLLARSVSAAGRLGPDLAPATHGYIPQSYRNVKMGNPVGSSSPGLTHPSSSSLGPSPAYSQQQALVSAPIFLPQNSERIDPNSVQSAFPFSMVTRDVLQSGHQWIESSQRDASRIVHSDPSSMANDIQNLDLYKRVPSGSQEYFSNEFPAGTSGRQTQGVLVDEFPHLDIINDLLDDEHGVGMAAGASTVLQSLSNGPHTLNRQFSFPRDISMSSDIGSSAGSCKFERTRSYHDDGFQRGYSSSVGHFDSVREFIPQATALPYSNGQIDGMIPTMWPMPGSDLSLMGMRNTEGEGYPYFHPEYSNMACGVNGYAVFRPSNGH
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEcccccccccccccccEEEccEEEEEEEEcccccccccEEEEEEEccccccccccEEEEEEEEEEEEccccccEEEcccEEEccccccccccccccccccccccccccEEEEEEEEEEEEEccEEccccHHHHHcccccccccEEEEEEEcccccccccccHHHHHHHHHHHHccccccccccccccccccccccccEEEEcccEEEcHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
ccccEEcccccccccccccccccEEcccEEEEEccccccccccccccccccccccccccccccccccccEEEEEEcccHcccccccccEEEEcccEEEEEEEEcccccccEEEEEEEEccccccccccEEEEEEEEEEEEcccccEEEEEcEEEEcccccccccccccEcccccccEEEccEEEEEEEEEEEEEEccccccccccccccccccHHHEHHHEHHHHHHcHccHHHHHHHHHHHHHHHHHHHcccccccccEcccccccccEEEEcccEEEEHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHccccccccccccHHHHHHHHHHcccccHHcccccccccccHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEccccccccccccccHccHHHHHHHHccccccccccccccccccccccccccccEEEccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHcccccccccccccccccccccccccccccccccccccccccccccccccccccHcccccccccccccccccccccccEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHcccccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEccccc
magiaseesgvgrsvegissgqrcqsgEALAEwrsseqvengtpstsppywdtdddddgwpkpselygkyTWRIEKFSQISKRELRSnafevggykWYILIYPQGCDVCNHLSLFLCvanhdkllpgwshfAQFTIAVvnrdpkkskysdtLHRFWKKEHDWGWKKFMELskvsdgfkdgdTLIIKAQVQVISFCAFWLGIDQNARRRMSREKTDAILKVVVKHFFIEKEVTSTLVMDSLYSGLKalegqskskKTKAKlldaedtpppivhvendmFVLVDDVLLLLERaaleplppkdekgpqnrtkesnsgedfnkdsiERDERRLTELGRRTVEIFVLAHIFSNKIEVAYQEAVALKRQEELIREEEAAWLAESEQKAKRGAAEKEKKAKKKLAKQKRnnrkgkekkreERSSMALSdrledenpsdekkefivedaqplpekpdvledvsdvsdsvdggaevlqpdsedrdtspvnwdtdasevippteasssgvcnlssvpngvtekrnasvmddssstcstdsvpsvvmygpykgnslanyqnqkspsrgknqrgkstydgnvwatetenqpsrpaadagehndisessksgeyeSEAVSSLQhqaklpeqnvakeeasspqkkssmkdpvdterpkektaavpssprspprnlqspvqlksvpksiatadpvpqvkslsngqqqTDQVaesctsspgagvckpEIQKAAASKQTeklmdpqvpnmsrpssaplvpgprptapvvsvvHTAPLLARSvsaagrlgpdlapathgyipqsyrnvkmgnpvgssspglthpsssslgpspaysqqqalvsapiflpqnseridpnsvqsafpfsmVTRDVLQSGHQWIESSqrdasrivhsdpssmandiqnldlykrvpsgsqeyfsnefpagtsgrqtqgvlvdefphldiindllddehgvgmaAGASTVLQslsngphtlnrqfsfprdismssdigssagsckfertrsyhddgfqrgysssvghfdsvrefipqatalpysngqidgmiptmwpmpgsdlslmgmrntegegypyfhpeysnmacgvngyavfrpsngh
magiaseesgvgrsvegissgqrcQSGEALAEwrsseqvengtpstsppywdtdddddgWPKPSELYGKYTWRIEKFSQISKRELRSNAFEVGGYKWYILIYPQGCDVCNHLSLFLCVANHDKLLPGWSHFAQFTIAVvnrdpkkskysdtlhrfwkkehdwgWKKFMELSKVSDGFKDGDTLIIKAQVQVISFCAFWLGIDQNARRRMSREKTDAILKVVVKHFFIEKEVTSTLVMDSLYSGLKALEGQSKSKKTKAklldaedtpppivhvenDMFVLVDDVLLLLERAaleplppkdekgpqnrtkesnsgedfnkdsierdERRLTELGRRTVEIFVLAHIFSNKIEVAYQEAVALKRQEELIREEEAAWLAESEQKakrgaaekekkakkklakqkrnnrkgkekkreerssmalsdrledenpsdekkefivedaqplpekpdVLEDVSDVSDSVDGgaevlqpdsedrdtspvnWDTDASEvippteasssgvcnlssvpngVTEKrnasvmddssstcstdsvpSVVMYGPYKGNSLAnyqnqkspsrgknqrgkSTYDGNVWATEtenqpsrpaadagehNDISESSKSGEYESEAVSSLQhqaklpeqnvakeeasspqkkssmkdpvdterpkektaavpssprspprnlqspvqLKSVPKSIATADPVPQVKSLSNGQQQTDQVAESCTSSPGAGVCKPEIQKAAASKQTEKLMDPQVPNMSRPSSAPLVPGPRPTAPVVSVVHTAPLLARSVSAAGRLGPDLAPATHGYIPQSYRNVKMGNPVGSSSPGLTHPSSSSLGPSPAYSQQQALVSAPIFLPQNSERIDPNSVQSAFPFSMVTRDVLQSGHQWIESSQRDASRIVHSdpssmandiqnLDLYKRVPSGSQEYFSNEFPAGTSGRQTQGVLVDEFPHLDIINDLLDDEHGVGMAAGASTVLQSLSNGPHTLNRQFSFPRDISMSSDIGSSAGSCKFERTRSYHDDGFQRGYSSSVGHFDSVREFIPQATALPYSNGQIDGMIPTMWPMPGSDLSLMGMRNTEGEGYPYFHPEYSNMACGVNGYAVFRPSNGH
MAGIASEESGVGRSVEGISSGQRCQSGEALAEWRSSEQVENGtpstsppywdtdddddgwpkpsELYGKYTWRIEKFSQISKRELRSNAFEVGGYKWYILIYPQGCDVCNHLSLFLCVANHDKLLPGWSHFAQFTIAVVNRDPKKSKYSDTLHRFWKKEHDWGWKKFMELSKVSDGFKDGDTLIIKAQVQVISFCAFWLGIDQNARRRMSREKTDAILKVVVKHFFIEKEVTSTLVMDSLYSGLKALEGQSKSKKTKAKLLDAEDTPPPIVHVENDMFVlvddvlllleraaleplpPKDEKGPQNRTKESNSGEDFNKDSIERDERRLTELGRRTVEIFVLAHIFSNKIEVAYQEAVALKRQEELIREEEAAWLAESeqkakrgaaekekkakkklakqkrnnrkgkekkreerSSMALSDRLEDENPSDEKKEFIVEDAQPLPEKPDVLEdvsdvsdsvdGGAEVLQPDSEDRDTSPVNWDTDASEVIPPTEASSSGVCNLSSVPNGVTEKRNAsvmddssstcstdsvpsvvMYGPYKGNSLANYQNQKSPSRGKNQRGKSTYDGNVWATETENQPSRPAADAGEHNDIsessksgeyeseAVSSLQHQAKLPEQNVAKEEASSPQKKSSMKDPVDTERPKEKTAAVpssprspprNLQSPVQLKSVPKSIATADPVPQVKSLSNGQQQTDQVAESCTSSPGAGVCKPEIQKAAASKQTEKLMDPQVPNMSRPSSAPLVPGPRPTAPVVSVVHTAPLLARSVSAAGRLGPDLAPATHGYIPQSYRNVKMGNPVgssspglthpsssslgpspAYSQQQALVSAPIFLPQNSERIDPNSVQSAFPFSMVTRDVLQSGHQWIESSQRDASRIVHSDPSSMANDIQNLDLYKRVPSGSQEYFSNEFPAGTSGRQTQGVLVDEFPHLDIINDLLDDEHGVGMAAGASTVLQSLSNGPHTLNRQFSFPRdismssdigssagsCKFERTRSYHDDGFQRGYSSSVGHFDSVREFIPQATALPYSNGQIDGMIPTMWPMPGSDLSLMGMRNTEGEGYPYFHPEYSNMACGVNGYAVFRPSNGH
****************************************************************ELYGKYTWRIEKFSQISKRELRSNAFEVGGYKWYILIYPQGCDVCNHLSLFLCVANHDKLLPGWSHFAQFTIAVVNRDPKKSKYSDTLHRFWKKEHDWGWKKFMELSKVSDGFKDGDTLIIKAQVQVISFCAFWLGIDQNARRRMSREKTDAILKVVVKHFFIEKEVTSTLVMDSLYSGLK************************IVHVENDMFVLVDDVLLLLERAA**************************************ELGRRTVEIFVLAHIFSNKIEVAYQEAVALKRQEELI***********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************VVSVVHTAPLLARSVSA************HGYI****************************************************************FSMVTRDVL***********************************************************QGVLVDEFPHLDIINDLLDDEHGVGMAAGASTV*************************************************GYSSSVGHFDSVREFIPQATALPYSNGQIDGMIPTMWPMPGSDLSLMGMRNTEGEGYPYFHPEYSNMACGVNGYAVF******
****************************************************T***********ELYGKYTWRIEKFSQISKRELRSNAFEVGGYKWYILIYPQGCDVCNHLSLFLCVANHDKLLPGWSHFAQFTIAVVNRDPKKSKYSDTLHRFWKKEHDWGWKKFMELSKVSDGFKDGDTLIIKAQVQVISFCAFWL****************AILKVVVKHFFIEKEVTSTLVMDSLYSGLKALEGQSKS***********DTPPPIVHVENDMFVLVDDVLLLLERAALEPLPPK**********************IERDERRLTELGRRTVEIFVLAHIFSNKIEVAYQEAVALKRQEE******************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************PHLDIINDLLDDEHGVG******************LNR*F**********************************************************************WPMPG*D************GYPYFHPEYSNMACGVNGYA********
**********************************************SPPYWDTDDDDDGWPKPSELYGKYTWRIEKFSQISKRELRSNAFEVGGYKWYILIYPQGCDVCNHLSLFLCVANHDKLLPGWSHFAQFTIAVVNRDPKKSKYSDTLHRFWKKEHDWGWKKFMELSKVSDGFKDGDTLIIKAQVQVISFCAFWLGIDQNARRRMSREKTDAILKVVVKHFFIEKEVTSTLVMDSLYSGLKALEG***********LDAEDTPPPIVHVENDMFVLVDDVLLLLERAALEPLPP**********************SIERDERRLTELGRRTVEIFVLAHIFSNKIEVAYQEAVALKRQEELIREEEAAWL***********************************************************EFIVEDAQPLPEKPDVLEDVSDVSDSVDGGAEVLQ***********NWDTDASEVI**********CNLSSVPNGVTEKR***************SVPSVVMYGPYKGNSLANYQ***************TYDGNVWATET*************************************AKLP**************************************************LKSVPKSIATADPVPQV**********************AGVCKPEIQKAAASKQTEKLMDPQVPNMSRPSSAPLVPGPRPTAPVVSVVHTAPLLARSVSAAGRLGPDLAPATHGYIPQSYRNVKMGNPVG**********************QQALVSAPIFLPQNSERIDPNSVQSAFPFSMVTRDVLQSGHQ******************SMANDIQNLDLYKRVPSGSQEYFSNEFPAGTSGRQTQGVLVDEFPHLDIINDLLDDEHGVGMAAGASTVLQSLSNGPHTLNRQFSFPRDISMSSDIGSSAGSCKFERTRSYHDDGFQRGYSSSVGHFDSVREFIPQATALPYSNGQIDGMIPTMWPMPGSDLSLMGMRNTEGEGYPYFHPEYSNMACGVNGYAVFRPSNGH
*********************QRCQSGEALAEWRSSEQVENGTPSTSPPYWDT****DGWPKPSELYGKYTWRIEKFSQISKRELRSNAFEVGGYKWYILIYPQGCDVCNHLSLFLCVANHDKLLPGWSHFAQFTIAVVNRDPKKSKYSDTLHRFWKKEHDWGWKKFMELSKVSDGFKDGDTLIIKAQVQVISFCAFWLGIDQN*****SREKTDAILKVVVKHFFIEKEVTSTLVMDSLYSGLKALEGQSKSKKTKAKLLDAEDTPPPIVHVENDMFVLVDDVLLLLERAALEPL*********************NKDSIERDERRLTELGRRTVEIFVLAHIFSNKIEVAYQEAVALKRQEELIREEEAAWLAESE******************************************************************************************************************************************************SVPSVVMYGPYKGNSLANYQNQK*************************************************************************************************************************************************************************************************************************************YIPQSYRNVKMG**********************************************************T************************************DL**R************FPAGTSGRQTQGVLVDEFPHLDIINDLLDDEHGVGMAAGASTVLQSLSNGPHTLNRQFSFPRDISMSSDIGSSAGSCKFERTRSYHDDGFQRGYSSSVGHFDSVREFIPQATALPYSNGQIDGMIPTMWPMPGSDLSLMGMRNTEGEGYPYFHPEYSNMACGVNGYAVFRPS***
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MAGIASEESGVGRSVEGISSGQRCQSGEALAEWRSSEQVENGTPSTSPPYWDTDDDDDGWPKPSELYGKYTWRIEKFSQISKRELRSNAFEVGGYKWYILIYPQGCDVCNHLSLFLCVANHDKLLPGWSHFAQFTIAVVNRDPKKSKYSDTLHRFWKKEHDWGWKKFMELSKVSDGFKDGDTLIIKAQVQVISFCAFWLGIDQNARRRMSREKTDAILKVVVKHFFIEKEVTSTLVMDSLYSGLKALEGQSKSKKTKAKLLDAEDTPPPIVHVENDMFVLVDDVLLLLERAALEPLPPKDEKGPQNRTKESNSGEDFNKDSIERDERRLTELGRRTVEIFVLAHIFSNKIEVAYQEAVALKRQEELIREEEAAWLAESEQKAxxxxxxxxxxxxxxxxxxxxxxxxxxxxKREERSSMALSDRLEDENPSDEKKEFIVEDAQPLPEKPDVLEDVSDVSDSVDGGAEVLQPDSEDRDTSPVNWDTDASEVIPPTEASSSGVCNLSSVPNGVTEKRNASVMDDSSSTCSTDSVPSVVMYGPYKGNSLANYQNQKSPSRGKNQRGKSTYDGNVWATETENQPSRPAADAGEHNDISESSKSGEYESEAVSSLQHQAKLPEQNVAKEEASSPQKKSSMKDPVDTERPKEKTAAVPSSPRSPPRNLQSPVQLKSVPKSIATADPVPQVKSLSNGQQQTDQVAESCTSSPGAGVCKPEIQKAAASKQTEKLMDPQVPNMSRPSSAPLVPGPRPTAPVVSVVHTAPLLARSVSAAGRLGPDLAPATHGYIPQSYRNVKMGNPVGSSSPGLTHPSSSSLGPSPAYSQQQALVSAPIFLPQNSERIDPNSVQSAFPFSMVTRDVLQSGHQWIESSQRDASRIVHSDPSSMANDIQNLDLYKRVPSGSQEYFSNEFPAGTSGRQTQGVLVDEFPHLDIINDLLDDEHGVGMAAGASTVLQSLSNGPHTLNRQFSFPRDISMSSDIGSSAGSCKFERTRSYHDDGFQRGYSSSVGHFDSVREFIPQATALPYSNGQIDGMIPTMWPMPGSDLSLMGMRNTEGEGYPYFHPEYSNMACGVNGYAVFRPSNGH
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query1080 2.2.26 [Sep-21-2011]
Q8RY181055 MATH domain-containing pr no no 0.907 0.928 0.505 0.0
Q84WU21115 Ubiquitin carboxyl-termin no no 0.119 0.115 0.417 8e-23
Q9FPT11116 Ubiquitin carboxyl-termin no no 0.119 0.115 0.417 2e-22
Q930091102 Ubiquitin carboxyl-termin yes no 0.119 0.117 0.319 5e-07
Q4VSI41103 Ubiquitin carboxyl-termin yes no 0.119 0.116 0.319 7e-07
Q6A4J81103 Ubiquitin carboxyl-termin yes no 0.119 0.116 0.312 2e-06
Q6U7I11101 Ubiquitin carboxyl-termin yes no 0.119 0.117 0.298 1e-05
Q5B3C81125 Stress response protein n yes no 0.075 0.072 0.345 2e-05
Q0CP151129 Stress response protein n N/A no 0.067 0.064 0.441 5e-05
Q4WXQ71153 Stress response protein n no no 0.068 0.064 0.368 7e-05
>sp|Q8RY18|Y5436_ARATH MATH domain-containing protein At5g43560 OS=Arabidopsis thaliana GN=At5g43560 PE=1 SV=1 Back     alignment and function desciption
 Score =  806 bits (2083), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 584/1155 (50%), Positives = 717/1155 (62%), Gaps = 175/1155 (15%)

Query: 1    MAGIASEESGVGRS-VEGISSGQRCQSGEALAEWRSSEQVENGTPSTSPPYWDTDDDDDG 59
            M+   +E+SG GRS +E  S+GQR QS EA+AEWRSSEQVENGTPSTSPPYWD DDDDD 
Sbjct: 1    MSESTNEDSGAGRSSLEENSNGQRSQSEEAIAEWRSSEQVENGTPSTSPPYWDIDDDDDF 60

Query: 60   WPKPSELYGKYTWRIEKFSQISKRELRSNAFEVGGYKWYILIYPQGCDVCNHLSLFLCVA 119
              KPS+L+GK TW IEKFS I+KRELR + FEVGGYKWYILIYPQGCDVCNHLSLFLCVA
Sbjct: 61   GSKPSQLFGKNTWTIEKFSDINKRELRGDVFEVGGYKWYILIYPQGCDVCNHLSLFLCVA 120

Query: 120  NHDKLLPGWSHFAQFTIAVVNRDPKKSKYSDTLHRFWKKEHDWGWKKFMELSKVSDGF-K 178
            +H+KLLPGWSHFAQFTIAV N+DPKKSK+SDTLHRFWKKEHDWGWKKF+EL K+ +GF  
Sbjct: 121  HHEKLLPGWSHFAQFTIAVSNKDPKKSKHSDTLHRFWKKEHDWGWKKFIELPKLKEGFID 180

Query: 179  DGDTLIIKAQVQVI---------------------------------------------- 192
            D   L IKAQVQVI                                              
Sbjct: 181  DSGCLTIKAQVQVIRERVDRPFRCLHYKYREELVRVYLGNVEQICWRFVEEKRSKLGRLI 240

Query: 193  -------SFCAFWLGIDQNARRRMSREKTDAILKVVVKHFFIEKEVTSTLVMDSLYSGLK 245
                   SFCAFW+G+DQN+RRRMSREK D ILK+VVKHFF+EKEVTSTLVMDSLYSGLK
Sbjct: 241  EDKAKWKSFCAFWMGLDQNSRRRMSREKMDVILKIVVKHFFVEKEVTSTLVMDSLYSGLK 300

Query: 246  ALEGQSKSKKTKAKLLDAEDTPPPIVHVENDMFVLVDDVLLLLERAALEPLPPKDEKGPQ 305
            ALEGQ+K+K+++ +L+D E++  PIV V+ D F LVDDVLLLLE+AALEPLP K+EK  Q
Sbjct: 301  ALEGQNKNKESRPRLMDTEESTAPIVSVDKDSFALVDDVLLLLEKAALEPLPKKEEKSSQ 360

Query: 306  NRTKESNSGEDFNKDSIERDERRLTELGRRTVEIFVLAHIFSNKIEVAYQEAVALKRQEE 365
            NRTK+ N+GE+F+++++ERD+RRLTELGRRTVEIFVLAHIFSNKIEVAYQEA+A KRQEE
Sbjct: 361  NRTKDGNAGEEFSREAVERDDRRLTELGRRTVEIFVLAHIFSNKIEVAYQEAIAWKRQEE 420

Query: 366  LIREEEAAWLAESEQKAKRGAAEKEKKAKKKLAKQKRNNRKGKEKKREERSSMALSDRLE 425
            LIREEE AWLAESEQK KRGA+EKEKK+KKK AKQK+N  KGKE ++E++       R +
Sbjct: 421  LIREEEEAWLAESEQKGKRGASEKEKKSKKKQAKQKKNKNKGKEMRKEDKV------RTQ 474

Query: 426  DENPSDEKKEFIVEDAQPLPEKPDVLEDVSDVSDSVDGGAEVLQPDSEDRDTSPVNWDTD 485
             E    EK+E +   A+   EKPD L DVSDVSDSVD  AE+LQ DSEDR++SPV+W+ D
Sbjct: 475  TEEREIEKEECVRAIAESSAEKPDTLGDVSDVSDSVDSSAEILQLDSEDRESSPVHWEMD 534

Query: 486  ASEVIPPTEASSS-GVCNLSSVPNGVTEKRNASVMDDSSSTCSTDSVPSVVMYGPYKGNS 544
            ASEV PP+   +S G  N  S+PNGV E++  S MDDSSSTCS DS+ S V  G YKGN 
Sbjct: 535  ASEVHPPSAGDTSRGRGNSFSIPNGVAERKGLSTMDDSSSTCSNDSIQSGVANGSYKGNV 594

Query: 545  LANYQNQKSPSRGKNQRGKSTYDGNVWATETENQPSRPAADAGEHNDISESSKSGEYESE 604
            L N Q+QK  S GK Q GK + D N  A+E E+QPSR A+D    +  S+  + GE +  
Sbjct: 595  L-NCQSQKWFSNGKIQPGKVS-DSNSLASEKEHQPSRLASDPKNQSHSSDIRRVGEADI- 651

Query: 605  AVSSLQHQAKLPEQNVAKEEASSPQKKSSM-KDPVDTERPKEKTAAVPSSPRSPPRNLQS 663
             +S +Q     PE         SP+++S + KDP +  + KEK+AAV S  R+ P N  S
Sbjct: 652  VISHIQK----PE---------SPKERSPVSKDP-NMIQMKEKSAAVLSPSRAAPWNPPS 697

Query: 664  PVQLKSVPKSIATADPVPQ-----VKSLSNGQQQTDQVAESCTSSPGAGVCKPEIQKAAA 718
            PVQ K   K ++  + VP      VKS S+      + A+  T  P A     +IQK A+
Sbjct: 698  PVQAKPEKKGVSNVEAVPNRKVISVKSPSSHHASPSREAQLQTVGPRA-----DIQKIAS 752

Query: 719  SKQTEKLMDPQVPNMSRPSSAPLVPGPRPTAPVVSVVHTAPL-LARSVSAAGRLGPDLAP 777
             K  E+      P MSRP SAP++P P   APV+S V T+   LARS+S+ GRLG   +P
Sbjct: 753  PKPVEQ----PAPPMSRPLSAPIIP-PTQAAPVISAVQTSTASLARSMSSTGRLG---SP 804

Query: 778  A-THGYIPQSYRNVKMGNPVGSSSPGLTHPSSSSLGPS--PAYSQQQALVSAPIFLPQNS 834
              +  Y PQSY++  +G      S G THPSS S G S  P YS       +PI +    
Sbjct: 805  THSQAYNPQSYKHAIVG------SSGFTHPSSQSSGTSTLPPYSH-----PSPISV---- 849

Query: 835  ERIDPNSVQSAFPFSMVTRDVLQSGHQWIESSQRDASRIVHSDPSSMANDIQNLDLYKRV 894
                  S QS FP ++ + DV   G  W   S            +   N      +   +
Sbjct: 850  ------SNQSGFPINVGSWDVSSGGLLWTGGSSSTRDTTTTISGNHKTNTYNAPVVTTSI 903

Query: 895  -PSGSQEYFSNEFPAGTSGRQTQGVLVDEFPHLDIINDLLDDEHGVGMAAGASTVLQSLS 953
             P+  Q            GR  Q ++ DEFPHLDIINDLL DEHG        T+  S+ 
Sbjct: 904  RPTNVQ-----------IGRTAQSLMTDEFPHLDIINDLLADEHG--------TMDNSVY 944

Query: 954  NGPHTLNRQFSFPRDISMSSDIGSSAGSCKFERTRSYHDDGFQRGYSSSVGHFDSVREFI 1013
              P   N Q+S+       +D+G S+      R+RSY DDGF + Y           E++
Sbjct: 945  RVPQQFNNQYSY----HGGADLGISS------RSRSYSDDGFHQSYG----------EYM 984

Query: 1014 PQ-ATALPYSNGQIDGMIPTMWPMPGSDLSLMGMRNTE------GEGYPYFHPEYSN-MA 1065
            P  A++ PY NGQ      + W M   D SL  MRN +         Y YF  + SN   
Sbjct: 985  PHSASSSPYGNGQTQ----SQWQMANMDFSLPAMRNQDDVSASATATYSYFDLDSSNPNL 1040

Query: 1066 CGVNGYAVFRPSNGH 1080
             G+NGY  FRPSNGH
Sbjct: 1041 SGINGYRDFRPSNGH 1055

Arabidopsis thaliana (taxid: 3702)
>sp|Q84WU2|UBP13_ARATH Ubiquitin carboxyl-terminal hydrolase 13 OS=Arabidopsis thaliana GN=UBP13 PE=1 SV=1 Back     alignment and function description
>sp|Q9FPT1|UBP12_ARATH Ubiquitin carboxyl-terminal hydrolase 12 OS=Arabidopsis thaliana GN=UBP12 PE=1 SV=2 Back     alignment and function description
>sp|Q93009|UBP7_HUMAN Ubiquitin carboxyl-terminal hydrolase 7 OS=Homo sapiens GN=USP7 PE=1 SV=2 Back     alignment and function description
>sp|Q4VSI4|UBP7_RAT Ubiquitin carboxyl-terminal hydrolase 7 OS=Rattus norvegicus GN=Usp7 PE=1 SV=1 Back     alignment and function description
>sp|Q6A4J8|UBP7_MOUSE Ubiquitin carboxyl-terminal hydrolase 7 OS=Mus musculus GN=Usp7 PE=1 SV=1 Back     alignment and function description
>sp|Q6U7I1|UBP7_CHICK Ubiquitin carboxyl-terminal hydrolase 7 OS=Gallus gallus GN=USP7 PE=2 SV=1 Back     alignment and function description
>sp|Q5B3C8|NST1_EMENI Stress response protein nst1 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=nst1 PE=3 SV=1 Back     alignment and function description
>sp|Q0CP15|NST1_ASPTN Stress response protein nst1 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=nst1 PE=3 SV=1 Back     alignment and function description
>sp|Q4WXQ7|NST1_ASPFU Stress response protein nst1 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=nst1 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1080
2241078911112 predicted protein [Populus trichocarpa] 0.972 0.944 0.699 0.0
2241021771111 predicted protein [Populus trichocarpa] 0.973 0.945 0.702 0.0
2254329631146 PREDICTED: MATH domain-containing protei 0.998 0.940 0.690 0.0
3565752491137 PREDICTED: MATH domain-containing protei 0.987 0.937 0.655 0.0
3565747441162 PREDICTED: MATH domain-containing protei 0.991 0.921 0.634 0.0
3565366591139 PREDICTED: MATH domain-containing protei 0.988 0.937 0.657 0.0
3574396591136 Ubiquitin carboxyl-terminal hydrolase [M 0.975 0.926 0.625 0.0
4494326021136 PREDICTED: MATH domain-containing protei 0.992 0.943 0.630 0.0
2977371821074 unnamed protein product [Vitis vinifera] 0.937 0.942 0.659 0.0
255551919840 conserved hypothetical protein [Ricinus 0.767 0.986 0.644 0.0
>gi|224107891|ref|XP_002314643.1| predicted protein [Populus trichocarpa] gi|222863683|gb|EEF00814.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score = 1413 bits (3658), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 799/1142 (69%), Positives = 884/1142 (77%), Gaps = 92/1142 (8%)

Query: 1    MAGIASEESGVGRSVEGISSGQRCQSGEALAEWRSSEQVENGTPSTSPPYWDTDDDDDGW 60
            MAGI  EE+GVGRS EGISSGQRCQSGE LAEWRSSEQVENGTPSTSPPYWDTDDDDDG 
Sbjct: 1    MAGIVGEEAGVGRSTEGISSGQRCQSGELLAEWRSSEQVENGTPSTSPPYWDTDDDDDGG 60

Query: 61   PKPSELYGKYTWRIEKFSQISKRELRSNAFEVGGYKWYILIYPQGCDVCNHLSLFLCVAN 120
            PKPSEL+GKYTW+IEKFSQI+KRELRSNAFEVGGYKWYILIYPQGCDVCNHLSLFLCVAN
Sbjct: 61   PKPSELFGKYTWKIEKFSQINKRELRSNAFEVGGYKWYILIYPQGCDVCNHLSLFLCVAN 120

Query: 121  HDKLLPGWSHFAQFTIAVVNRDPKKSKYSDTLHRFWKKEHDWGWKKFMELSKVSDGFKDG 180
            HDKLLPGWSHFAQFTIAVVN+D KKSKYSDTLHRFWKKEHDWGWKKFMELSKVSDGF D 
Sbjct: 121  HDKLLPGWSHFAQFTIAVVNKDAKKSKYSDTLHRFWKKEHDWGWKKFMELSKVSDGFLDA 180

Query: 181  -DTLIIKAQVQVI----------------------------------------------- 192
             DTLIIKAQVQVI                                               
Sbjct: 181  TDTLIIKAQVQVIREKADRPFRCLDCQYRRELVRVYLTNVEQICRRFVEERRGKLGKLLE 240

Query: 193  ------SFCAFWLGIDQNARRRMSREKTDAILKVVVKHFFIEKEVTSTLVMDSLYSGLKA 246
                  SFCAFWLG+DQNARRRMSREKTD ILKVVVKHFFIEKEVTSTLVMDSLYSGLKA
Sbjct: 241  DKNRWSSFCAFWLGMDQNARRRMSREKTDVILKVVVKHFFIEKEVTSTLVMDSLYSGLKA 300

Query: 247  LEGQSKSKKTKAKLLDAEDTPPPIVHVENDMFVLVDDVLLLLERAALEPLPPKDEKGPQN 306
            LEGQ+KSKK +AKLLDAE+ P PIV VE DMFVLVDDVLLLLERAA+EPLPPKDEKGPQN
Sbjct: 301  LEGQTKSKKGRAKLLDAEEMPAPIVCVEKDMFVLVDDVLLLLERAAMEPLPPKDEKGPQN 360

Query: 307  RTKESNSGEDFNKDSIERDERRLTELGRRTVEIFVLAHIFSNKIEVAYQEAVALKRQEEL 366
            RTK+ +SGEDFNKDSIERDERRLTELGRRTVEIFVLAHIF++KIEV+YQEAVALKRQEEL
Sbjct: 361  RTKDGSSGEDFNKDSIERDERRLTELGRRTVEIFVLAHIFNHKIEVSYQEAVALKRQEEL 420

Query: 367  IREEEAAWLAESEQKAKRGAAEKEKKAKKKLAKQKRNNRKGKEKKREERSSMALSDRLED 426
            IREEEAAWLAESEQKAKRGA EKEKK KKK AKQKRNNRKGK+K RE+RS +A+ D+ ++
Sbjct: 421  IREEEAAWLAESEQKAKRGATEKEKKLKKKQAKQKRNNRKGKDKGREDRSGVAVVDKYQE 480

Query: 427  ENPSDEKKEFIVEDAQPLPEKPDVLEDVSDVSDSVDGGAEVLQPDSEDRDTSPVNWDTDA 486
             N S+E KEF VE+ +P+ EKP+VLEDVSDVSDSVDG AEVLQ DSEDRD SPVNWDTD+
Sbjct: 481  SNLSNENKEFAVEEVRPVMEKPEVLEDVSDVSDSVDGVAEVLQHDSEDRDASPVNWDTDS 540

Query: 487  SEVIPPTEASSSGVCNLSSVPNGVTEKRNASVMDDSSSTCSTDSVPSVVMYGPYKGNSLA 546
            SEV PPTE SSSGV  LSSVPNG ++KR+   MDDSSSTCSTDSVPSVVM  PYKGNS  
Sbjct: 541  SEVHPPTEVSSSGVSGLSSVPNGTSDKRSTYAMDDSSSTCSTDSVPSVVMNDPYKGNSYL 600

Query: 547  NYQNQKSPSRGKNQRGKSTYDGNVWATETENQPSRPAADAGEHNDISESSKSGEYESEA- 605
            NYQ +K PSRGKNQRGK  +D + W  E +NQP  PA+D G+H+D++ SSK+ + E EA 
Sbjct: 601  NYQFEKLPSRGKNQRGKMAHDAS-WTAEMDNQPPEPASDTGDHSDVTRSSKAADCELEAV 659

Query: 606  VSSLQHQAKLPEQNVAKEEASSPQKKSSMKDPVDTERPKEKTAAV----PSSPRSPPRNL 661
            V  LQ +    EQ+V K        K+S KD V+ ERPKEKTAAV     S P SPP+N+
Sbjct: 660  VHDLQDRMVKLEQHVIK------TGKTSNKDLVEVERPKEKTAAVPSSPRSPPTSPPKNV 713

Query: 662  QSPVQLKSVPKSIATADPVPQVKSLSNGQQQTDQVAESCTSSPGAGVCKPEIQKAAASKQ 721
             S VQLKS  KS AT D     K+ SN   Q D+ A S TS   AG+ KPEIQ    +KQ
Sbjct: 714  PSTVQLKSESKSSATMDLSQVKKASSNCSMQADKAATSATSPQNAGIPKPEIQNVPTAKQ 773

Query: 722  TEKLMDPQVPNMSRPSSAPLVPGPRPTAPVVSVVHTAPLLARSVSAAGRLGPDLAPATHG 781
            ++K    QVP MSRPSSAPLVPGPRPTA  +SVV T PLL+RSVSAAGRLGPD +PATH 
Sbjct: 774  SDKPTLKQVPAMSRPSSAPLVPGPRPTAAPISVVQTTPLLSRSVSAAGRLGPDPSPATHS 833

Query: 782  YIPQSYRNVKMGNPVGSSSPGLTHPSSSSLGP--SPAYSQQQALVSAPIFL-PQNSERID 838
            Y+PQSYRN  +GN VGSSS G TH SS S G   SP + Q   LVSAP+FL P NS+R+D
Sbjct: 834  YVPQSYRNAIIGNAVGSSSSGFTHTSSPSTGVNLSPVHVQPSTLVSAPMFLPPLNSDRVD 893

Query: 839  PNSVQSAFPFSMVTRDVLQSGHQWIESSQRDASRIVHSDPSSMANDIQNLDLYKRVPSGS 898
            PN+ QS FPF MVTRDVLQ G QW+ESSQRDASR +  DPSS+ N +QN+DLY  V SGS
Sbjct: 894  PNTHQSGFPFGMVTRDVLQDGRQWMESSQRDASRSMSGDPSSLINGMQNIDLYNPVRSGS 953

Query: 899  QEYFSNEFPAGTSGRQTQGVLVDEFPHLDIINDLLDDEHGVGMAAGASTVLQSLSNGPHT 958
            Q ++S+EFPA TSGRQTQ  L DEFPHLDIINDLLD+EH VG AA AS V +  SNGPH 
Sbjct: 954  QVHYSSEFPACTSGRQTQSGLTDEFPHLDIINDLLDEEHAVGKAAEASRVFR--SNGPHL 1011

Query: 959  LNRQFSFPRDISMSSDIGSSAGSCKFERTRSYHDDGFQRGYSSSVGHFDSVREFIPQATA 1018
            LNRQ                     FERTRSYHD GFQR YSSS  HFD+ RE+IPQA++
Sbjct: 1012 LNRQ---------------------FERTRSYHDGGFQRSYSSSGTHFDTPREYIPQASS 1050

Query: 1019 LPYSNGQIDGMIPTMWPMPGSDLSLMGMRNTEGEGYPYFHPEYSNMACGVNGYAVFRPSN 1078
            +PY+NG IDG+I   W M GSD+SLMGMRN +G+  PYF+PEYSNMACGVNGY VFRPSN
Sbjct: 1051 MPYANGHIDGLISNQWQMAGSDISLMGMRNADGDSSPYFNPEYSNMACGVNGYTVFRPSN 1110

Query: 1079 GH 1080
            GH
Sbjct: 1111 GH 1112

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224102177|ref|XP_002312577.1| predicted protein [Populus trichocarpa] gi|222852397|gb|EEE89944.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225432963|ref|XP_002284428.1| PREDICTED: MATH domain-containing protein At5g43560-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|356575249|ref|XP_003555754.1| PREDICTED: MATH domain-containing protein At5g43560-like [Glycine max] Back     alignment and taxonomy information
>gi|356574744|ref|XP_003555505.1| PREDICTED: MATH domain-containing protein At5g43560-like [Glycine max] Back     alignment and taxonomy information
>gi|356536659|ref|XP_003536854.1| PREDICTED: MATH domain-containing protein At5g43560-like [Glycine max] Back     alignment and taxonomy information
>gi|357439659|ref|XP_003590107.1| Ubiquitin carboxyl-terminal hydrolase [Medicago truncatula] gi|355479155|gb|AES60358.1| Ubiquitin carboxyl-terminal hydrolase [Medicago truncatula] Back     alignment and taxonomy information
>gi|449432602|ref|XP_004134088.1| PREDICTED: MATH domain-containing protein At5g43560-like [Cucumis sativus] gi|449516593|ref|XP_004165331.1| PREDICTED: MATH domain-containing protein At5g43560-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|297737182|emb|CBI26383.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255551919|ref|XP_002517004.1| conserved hypothetical protein [Ricinus communis] gi|223543639|gb|EEF45167.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1080
TAIR|locus:20182791082 AT1G04300 "AT1G04300" [Arabido 0.591 0.590 0.424 2.3e-207
TAIR|locus:21583871055 AT5G43560 "AT5G43560" [Arabido 0.504 0.516 0.416 2.4e-193
TAIR|locus:2156692397 AT5G52330 "AT5G52330" [Arabido 0.118 0.322 0.744 1e-97
TAIR|locus:504955448382 AT4G16045 "AT4G16045" [Arabido 0.103 0.293 0.610 6.8e-49
TAIR|locus:20815011115 UBP13 "ubiquitin-specific prot 0.119 0.115 0.417 1.7e-19
TAIR|locus:21441181116 UBP12 "ubiquitin-specific prot 0.119 0.115 0.417 2.2e-19
TAIR|locus:2085445330 AT3G58210 "AT3G58210" [Arabido 0.145 0.475 0.345 1.6e-15
TAIR|locus:2085355317 AT3G58250 "AT3G58250" [Arabido 0.114 0.391 0.348 8.6e-15
TAIR|locus:2085390298 AT3G58360 "AT3G58360" [Arabido 0.117 0.426 0.340 1e-12
TAIR|locus:2026751294 AT1G69650 "AT1G69650" [Arabido 0.119 0.438 0.321 1.2e-12
TAIR|locus:2018279 AT1G04300 "AT1G04300" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1161 (413.8 bits), Expect = 2.3e-207, Sum P(4) = 2.3e-207
 Identities = 288/679 (42%), Positives = 371/679 (54%)

Query:   184 IIKAQVQVISFCAFWLGIDQNARRRMSREKTDAILKVVVKHFFIEKEVTSTLVMDSLYSG 243
             +I+ + +  SF  FWLG+DQN+RRRM REK D ILK VVKHFF+EKEV+STLVMDSLYSG
Sbjct:   246 LIEDKARWTSFGVFWLGMDQNSRRRMCREKVDVILKGVVKHFFVEKEVSSTLVMDSLYSG 305

Query:   244 LKALEGQSKSKKTKAKLLDAEDTPPPIVHVENDMFVXXXXXXXXXXXXXXXXXXPKDEKG 303
             LKALEGQ+K+ K +++LLDA+  P PIV V+ DMFV                  PKDEKG
Sbjct:   306 LKALEGQTKNMKARSRLLDAKQLPAPIVSVDKDMFVLVDDVLLLLERAALEPLPPKDEKG 365

Query:   304 PQNRTKESNSGEDFNKDSIERDERRLTELGRRTVEIFVLAHIFSNKIEVAYQEAVALKRQ 363
              QNRTK+ N GE+ NK++ ERDERRLTELGRRTVEIF+L+HIFS KIEVA+QEA+ALKRQ
Sbjct:   366 RQNRTKDGNDGEEVNKEADERDERRLTELGRRTVEIFILSHIFSTKIEVAHQEAIALKRQ 425

Query:   364 EELIREEEAAWLAESXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSMALSDR 423
             EELIREEE AWLAE+                                      S A   +
Sbjct:   426 EELIREEEEAWLAETEQRAKRGAAEREKKSKKKQAKQKRNKNKGKDKRKEEKVSFATHAK 485

Query:   424 -LED---ENPSDEK-KEFIVEDAQPLPEKPDVLEXXXXXXXXXXGGAEVLQPDSEDRDTS 478
              LE+   +N +DE+ K+ + E AQ   EKPD L           G A++LQPD EDRD+S
Sbjct:   486 DLEENQNQNQNDEEEKDSVTEKAQSSAEKPDTLGDVSDISDSVDGSADILQPDLEDRDSS 545

Query:   479 PVNWDTDASEVIPPTEASSSGVCNLS-SVPNGVTEKRNAXXXXXXXXXXXXXXXXXXXMY 537
              V WDTDA E+ PP+   SS    +S S PNG+TE ++                      
Sbjct:   546 SVLWDTDALEIHPPSSEGSSRGRGISISTPNGITEGKSHSTMDDSSSTCSNDSIRSGVTN 605

Query:   538 GPYKGNSLANYQNQKSPSRGKNQRGKSTYDGNVWATETENQPSRPAADAGEHNDIXXXXX 597
             G Y+GNSL N++NQKSP++GKNQ+ K+  D +  A+ET++QPS    D    N       
Sbjct:   606 GSYQGNSL-NFRNQKSPNKGKNQQVKAMTDAHSLASETDDQPSTLGTDPKGQNYSSEASN 664

Query:   598 XXXXXXXAVSSLQHQAKLPEQNVAKEEASSPQKK-SSMKDPVDTERPKEKTAAVXXXXXX 656
                     VS +Q     PE +  +      +K   S+ + VD +RPKEK+ AV      
Sbjct:   665 VGESDWVVVSHIQE----PEGSRNRIPVGRERKTVQSIVNSVDMDRPKEKSTAVLSSPRN 720

Query:   657 XXXNLQSPVQLKSVPKSIATADPVPQVKSLSNGQQQTDQVA-ESCTSSPGAGVCKPEIQK 715
                N     Q K   KSI+TAD +P  K L+ G   + QV   S   S   G+ + ++QK
Sbjct:   721 VAKNPSPLTQTKPEKKSISTADGIPNRKVLATGPPSSSQVVLPSDIQSQTVGL-RADMQK 779

Query:   716 AAASKQTEKLMDPQVPNMSRPSSAPLVPGPRPTAPVVSV-VHTAPLLARSVSAAGRLGPD 774
              +A KQ      P    +SRPSSAP++P  RP+   VS  V T   L RSVS+AGRLGPD
Sbjct:   780 LSAPKQ------PPATTISRPSSAPIIPAMRPSPITVSSSVQTTTSLPRSVSSAGRLGPD 833

Query:   775 LAPATHG---YIPQSYRNVKMGNPVXXXXXXXXXXXXXXXXXXXAYSQQQALVSAPIFLP 831
               P+ H    Y PQSY+N  +GN +                    +     +V  P  LP
Sbjct:   834 --PSLHNQQTYTPQSYKNAIVGNSLGSSSSSFNH-----------HPSSHGVV--PTTLP 878

Query:   832 QNSERIDP-NSVQSAFPFS 849
              +S    P +S QS+FP+S
Sbjct:   879 SSSYSQAPTSSYQSSFPYS 897
GO:0003674 "molecular_function" evidence=ND
GO:0005634 "nucleus" evidence=ISM
GO:0005886 "plasma membrane" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0009630 "gravitropism" evidence=RCA
TAIR|locus:2158387 AT5G43560 "AT5G43560" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2156692 AT5G52330 "AT5G52330" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:504955448 AT4G16045 "AT4G16045" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2081501 UBP13 "ubiquitin-specific protease 13" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2144118 UBP12 "ubiquitin-specific protease 12" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2085445 AT3G58210 "AT3G58210" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2085355 AT3G58250 "AT3G58250" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2085390 AT3G58360 "AT3G58360" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2026751 AT1G69650 "AT1G69650" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_Genewise1_v1.C_LG_X5521
hypothetical protein (1112 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1080
cd00121126 cd00121, MATH, MATH (meprin and TRAF-C homology) d 1e-35
pfam00917116 pfam00917, MATH, MATH domain 5e-22
cd03775134 cd03775, MATH_Ubp21p, Ubiquitin-specific protease 1e-18
smart0006195 smart00061, MATH, meprin and TRAF homology 2e-17
COG50771089 COG5077, COG5077, Ubiquitin carboxyl-terminal hydr 2e-09
cd03772137 cd03772, MATH_HAUSP, Herpesvirus-associated ubiqui 1e-08
cd03773132 cd03773, MATH_TRIM37, Tripartite motif containing 8e-08
cd00270149 cd00270, MATH_TRAF_C, Tumor Necrosis Factor Recept 6e-06
cd03776147 cd03776, MATH_TRAF6, Tumor Necrosis Factor Recepto 2e-04
pfam13868349 pfam13868, Trichoplein, Tumour suppressor, Mitosta 5e-04
PRK04195482 PRK04195, PRK04195, replication factor C large sub 7e-04
pfam06658142 pfam06658, DUF1168, Protein of unknown function (D 0.001
PTZ001212084 PTZ00121, PTZ00121, MAEBL; Provisional 0.003
>gnl|CDD|238068 cd00121, MATH, MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins Back     alignment and domain information 
 Score =  130 bits (330), Expect = 1e-35
 Identities = 47/126 (37%), Positives = 71/126 (56%), Gaps = 3/126 (2%)

Query: 68  GKYTWRIEKFSQISKRELRSNAFEVGGYKWYILIYPQGCDVC-NHLSLFLCVANHDKLLP 126
           GK+TW+I  FS++    + S  FEVGGYKW I IYP G     ++LSL+L +   +  L 
Sbjct: 1   GKHTWKIVNFSELEGESIYSPPFEVGGYKWRIRIYPNGDGESGDYLSLYLELDKGESDLE 60

Query: 127 GWSHFAQFTIAVVNRDPKKS-KYSDTLHRFWKKEHDWGWKKFMELSKV-SDGFKDGDTLI 184
            WS  A+FT+ +VN++  KS   S T   F +K   WG+ KF+    +    +   D+L 
Sbjct: 61  KWSVRAEFTLKLVNQNGGKSLSKSFTHVFFSEKGSGWGFPKFISWDDLEDSYYLVDDSLT 120

Query: 185 IKAQVQ 190
           I+ +V+
Sbjct: 121 IEVEVK 126

Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane and are capable of cleaving growth factors, extracellular matrix proteins, and biologically active peptides. TRAF molecules serve as adapter proteins that link cell surface receptors of the Tumor Necrosis Factor and 1nterleukin-1/Toll-like families to downstream kinase cascades, which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems. Other members include the ubiquitin ligases, TRIM37 and SPOP, and the ubiquitin-specific proteases, HAUSP and Ubp21p. A large number of uncharacterized members mostly from lineage-specific expansions in C. elegans and rice contain MATH and BTB domains, similar to SPOP. The MATH domain has been shown to bind peptide/protein substrates in TRAFs and HAUSP. It is possible that the MATH domain in other members of this superfamily also interacts with various protein substrates. The TRAF domain may also be involved in the trimerization of TRAFs. Based on homology, it is postulated that the MATH domain in meprins may be involved in its tetramer assembly and that the MATH domain, in general, may take part in diverse modular arrangements defined by adjacent multimerization domains. Length = 126
>gnl|CDD|216189 pfam00917, MATH, MATH domain Back     alignment and domain information
>gnl|CDD|239744 cd03775, MATH_Ubp21p, Ubiquitin-specific protease 21 (Ubp21p) family, MATH domain; composed of fungal proteins with similarity to Ubp21p of fission yeast Back     alignment and domain information
>gnl|CDD|214496 smart00061, MATH, meprin and TRAF homology Back     alignment and domain information
>gnl|CDD|227409 COG5077, COG5077, Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|239741 cd03772, MATH_HAUSP, Herpesvirus-associated ubiquitin-specific protease (HAUSP, also known as USP7) family, N-terminal MATH (TRAF-like) domain; composed of proteins similar to human HAUSP, an enzyme that specifically catalyzes the deubiquitylation of p53 and MDM2, hence playing an important role in the p53-MDM2 pathway Back     alignment and domain information
>gnl|CDD|239742 cd03773, MATH_TRIM37, Tripartite motif containing protein 37 (TRIM37) family, MATH domain; TRIM37 is a peroxisomal protein and is a member of the tripartite motif (TRIM) protein subfamily, also known as the RING-B-box-coiled-coil (RBCC) subfamily of zinc-finger proteins Back     alignment and domain information
>gnl|CDD|238168 cd00270, MATH_TRAF_C, Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link cell surface TNFRs and receptors of the interleukin-1/Toll-like family to downstream kinase signaling cascades which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems Back     alignment and domain information
>gnl|CDD|239745 cd03776, MATH_TRAF6, Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF6 subfamily, TRAF domain, C-terminal MATH subdomain; composed of proteins with similarity to human TRAF6, including the Drosophila protein DTRAF2 Back     alignment and domain information
>gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin Back     alignment and domain information
>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional Back     alignment and domain information
>gnl|CDD|219124 pfam06658, DUF1168, Protein of unknown function (DUF1168) Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 1080
COG50771089 Ubiquitin carboxyl-terminal hydrolase [Posttransla 99.9
cd03772137 MATH_HAUSP Herpesvirus-associated ubiquitin-specif 99.89
cd03775134 MATH_Ubp21p Ubiquitin-specific protease 21 (Ubp21p 99.87
cd03773132 MATH_TRIM37 Tripartite motif containing protein 37 99.82
cd00121126 MATH MATH (meprin and TRAF-C homology) domain; an 99.82
cd03774139 MATH_SPOP Speckle-type POZ protein (SPOP) family, 99.81
cd00270149 MATH_TRAF_C Tumor Necrosis Factor Receptor (TNFR)- 99.8
cd03776147 MATH_TRAF6 Tumor Necrosis Factor Receptor (TNFR)-A 99.78
cd03781154 MATH_TRAF4 Tumor Necrosis Factor Receptor (TNFR)-A 99.75
cd03780148 MATH_TRAF5 Tumor Necrosis Factor Receptor (TNFR)-A 99.75
PF00917119 MATH: MATH domain; InterPro: IPR002083 Although ap 99.74
cd03779147 MATH_TRAF1 Tumor Necrosis Factor Receptor (TNFR) A 99.74
cd03777186 MATH_TRAF3 Tumor Necrosis Factor Receptor (TNFR)-A 99.73
cd03778164 MATH_TRAF2 Tumor Necrosis Factor Receptor (TNFR) A 99.68
cd03771167 MATH_Meprin Meprin family, MATH domain; Meprins ar 99.67
smart0006195 MATH meprin and TRAF homology. 99.62
KOG18631093 consensus Ubiquitin carboxyl-terminal hydrolase [P 99.56
cd03783167 MATH_Meprin_Alpha Meprin family, Alpha subunit, MA 99.33
cd03782167 MATH_Meprin_Beta Meprin family, Beta subunit, MATH 99.27
KOG1987297 consensus Speckle-type POZ protein SPOP and relate 98.12
PHA03098534 kelch-like protein; Provisional 97.75
PHA02713557 hypothetical protein; Provisional 97.58
PHA02790480 Kelch-like protein; Provisional 97.25
KOG2412591 consensus Nuclear-export-signal (NES)-containing p 97.19
KOG4441571 consensus Proteins containing BTB/POZ and Kelch do 97.01
PF00651111 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB ( 96.96
PTZ002661021 NIMA-related protein kinase; Provisional 96.58
KOG4364811 consensus Chromatin assembly factor-I [Chromatin s 96.57
KOG10291118 consensus Endocytic adaptor protein intersectin [S 96.56
PTZ00121 2084 MAEBL; Provisional 96.46
KOG4364811 consensus Chromatin assembly factor-I [Chromatin s 96.43
PTZ00121 2084 MAEBL; Provisional 96.38
KOG01631259 consensus Myosin class VI heavy chain [Cytoskeleto 96.08
PRK00247429 putative inner membrane protein translocase compon 95.68
PTZ002661021 NIMA-related protein kinase; Provisional 95.44
cd02666343 Peptidase_C19J A subfamily of Peptidase C19. Pepti 95.37
KOG20021018 consensus TPR-containing nuclear phosphoprotein th 95.32
KOG10291118 consensus Endocytic adaptor protein intersectin [S 95.12
KOG01631259 consensus Myosin class VI heavy chain [Cytoskeleto 94.86
smart0022590 BTB Broad-Complex, Tramtrack and Bric a brac. Doma 94.85
KOG2412591 consensus Nuclear-export-signal (NES)-containing p 94.65
KOG4350620 consensus Uncharacterized conserved protein, conta 94.36
KOG0345567 consensus ATP-dependent RNA helicase [RNA processi 94.16
KOG2891445 consensus Surface glycoprotein [General function p 93.59
KOG2072988 consensus Translation initiation factor 3, subunit 93.41
PF05262489 Borrelia_P83: Borrelia P83/100 protein; InterPro: 93.22
KOG3054299 consensus Uncharacterized conserved protein [Funct 92.84
PRK00247429 putative inner membrane protein translocase compon 92.6
PF05262489 Borrelia_P83: Borrelia P83/100 protein; InterPro: 92.43
KOG2891445 consensus Surface glycoprotein [General function p 92.14
KOG2072988 consensus Translation initiation factor 3, subunit 91.75
CHL00118156 atpG ATP synthase CF0 B' subunit; Validated 91.34
PRK13428445 F0F1 ATP synthase subunit delta; Provisional 91.19
TIGR03321246 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. 91.0
PF07946321 DUF1682: Protein of unknown function (DUF1682); In 90.76
cd02671332 Peptidase_C19O A subfamily of Peptidase C19. Pepti 90.57
PRK14472175 F0F1 ATP synthase subunit B; Provisional 90.05
PRK14471164 F0F1 ATP synthase subunit B; Provisional 90.04
PF07946321 DUF1682: Protein of unknown function (DUF1682); In 89.9
cd02664327 Peptidase_C19H A subfamily of Peptidase C19. Pepti 89.88
PRK09510387 tolA cell envelope integrity inner membrane protei 89.87
KOG3054299 consensus Uncharacterized conserved protein [Funct 89.81
PRK09174204 F0F1 ATP synthase subunit B'; Validated 89.65
PRK06231205 F0F1 ATP synthase subunit B; Validated 89.54
KOG0297391 consensus TNF receptor-associated factor [Signal t 89.48
PRK14474250 F0F1 ATP synthase subunit B; Provisional 89.44
PRK13453173 F0F1 ATP synthase subunit B; Provisional 89.26
PRK08475167 F0F1 ATP synthase subunit B; Validated 89.05
PRK07352174 F0F1 ATP synthase subunit B; Validated 88.87
PRK13454181 F0F1 ATP synthase subunit B'; Provisional 88.82
cd02668324 Peptidase_C19L A subfamily of Peptidase C19. Pepti 88.73
PRK07353140 F0F1 ATP synthase subunit B'; Validated 88.2
PRK13455184 F0F1 ATP synthase subunit B; Provisional 88.14
PRK13460173 F0F1 ATP synthase subunit B; Provisional 88.09
COG3064387 TolA Membrane protein involved in colicin uptake [ 88.07
TIGR02794346 tolA_full TolA protein. TolA couples the inner mem 87.68
PRK14475167 F0F1 ATP synthase subunit B; Provisional 87.64
CHL00019184 atpF ATP synthase CF0 B subunit 87.57
PRK06569155 F0F1 ATP synthase subunit B'; Validated 87.51
cd02659334 peptidase_C19C A subfamily of Peptidase C19. Pepti 87.42
COG4499434 Predicted membrane protein [Function unknown] 87.22
PRK14473164 F0F1 ATP synthase subunit B; Provisional 86.98
COG3064387 TolA Membrane protein involved in colicin uptake [ 86.92
KOG2357440 consensus Uncharacterized conserved protein [Funct 86.48
PF06098291 Radial_spoke_3: Radial spoke protein 3; InterPro: 86.02
PRK08476141 F0F1 ATP synthase subunit B'; Validated 85.87
PRK06568154 F0F1 ATP synthase subunit B; Validated 85.81
cd02657305 Peptidase_C19A A subfamily of Peptidase C19. Pepti 85.74
cd02667279 Peptidase_C19K A subfamily of Peptidase C19. Pepti 85.29
cd02661304 Peptidase_C19E A subfamily of Peptidase C19. Pepti 85.25
PRK13461159 F0F1 ATP synthase subunit B; Provisional 85.23
cd02658311 Peptidase_C19B A subfamily of Peptidase C19. Pepti 85.2
cd02662240 Peptidase_C19F A subfamily of Peptidase C19. Pepti 84.68
TIGR01144147 ATP_synt_b ATP synthase, F0 subunit b. This model 84.39
TIGR02794346 tolA_full TolA protein. TolA couples the inner mem 82.78
KOG3809583 consensus Microtubule-binding protein MIP-T3 [Cyto 82.7
KOG0742630 consensus AAA+-type ATPase [Posttranslational modi 82.68
cd02660328 Peptidase_C19D A subfamily of Peptidase C19. Pepti 82.55
PF06637442 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 Th 82.54
PRK05759156 F0F1 ATP synthase subunit B; Validated 82.5
cd02663300 Peptidase_C19G A subfamily of Peptidase C19. Pepti 82.37
PF00443269 UCH: Ubiquitin carboxyl-terminal hydrolase; InterP 81.83
KOG4848225 consensus Extracellular matrix-associated peroxida 81.72
PRK06568154 F0F1 ATP synthase subunit B; Validated 81.05
PF07888546 CALCOCO1: Calcium binding and coiled-coil domain ( 80.91
cd02669440 Peptidase_C19M A subfamily of Peptidase C19. Pepti 80.83
KOG47861136 consensus Ubinuclein, nuclear protein interacting 80.74
KOG1103561 consensus Predicted coiled-coil protein [Function 80.63
PRK14474250 F0F1 ATP synthase subunit B; Provisional 80.63
KOG2963405 consensus RNA-binding protein required for 60S rib 80.43
>COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
Probab=99.90  E-value=1.5e-23  Score=244.11  Aligned_cols=180  Identities=27%  Similarity=0.507  Sum_probs=151.5

Q ss_pred             cccCcEEEEEEcCcccccCCeeeCCcEEeCCeEEEEEEEeCCCCCCCeEEEEEEEeccCC--CC-CCCeEEEEEEEEEEe
Q 001419           64 SELYGKYTWRIEKFSQISKRELRSNAFEVGGYKWYILIYPQGCDVCNHLSLFLCVANHDK--LL-PGWSHFAQFTIAVVN  140 (1080)
Q Consensus        64 s~~~gkFtWkIeNFSkLkke~I~Sp~FevGG~~WRIlVYPrGn~~~dyLSLYLec~~~es--l~-~~WSI~AqFtL~LLN  140 (1080)
                      ......|+|+|++|+.+.+ .+.||.|.+||+.|+|.++|+|+...+ +++||+....+.  .. ..|.|+|+|.|.|-+
T Consensus        35 e~~~~sftW~vk~wsel~~-k~~Sp~F~vg~~twki~lfPqG~nq~~-~sVyLe~~pqe~e~~~gk~~~ccaqFaf~Is~  112 (1089)
T COG5077          35 ELLEMSFTWKVKRWSELAK-KVESPPFSVGGHTWKIILFPQGNNQCN-VSVYLEYEPQELEETGGKYYDCCAQFAFDISN  112 (1089)
T ss_pred             HHhhcccceecCChhhhhh-hccCCcccccCeeEEEEEecccCCccc-cEEEEEeccchhhhhcCcchhhhhheeeecCC
Confidence            3456789999999999976 588999999999999999999987655 999999864321  11 359999999999998


Q ss_pred             CC-CCCccccccceeccCCCCCcccccccccccccc------ccccCCeEEEEEEEEEEe--ccccccccchhhhhcccc
Q 001419          141 RD-PKKSKYSDTLHRFWKKEHDWGWKKFMELSKVSD------GFKDGDTLIIKAQVQVIS--FCAFWLGIDQNARRRMSR  211 (1080)
Q Consensus       141 Qd-GkkS~sket~h~Fs~ke~dWGwskFIswddLes------GFLVDDsLtIEc~VkVis--~tgiw~~fD~~~rl~DSk  211 (1080)
                      +. +......+..|+|.....+|||.+|+.+.+|..      .|+.+|++.|.+.|.|++  ++.+|+.|    ..+++|
T Consensus       113 p~~pti~~iN~sHhrFs~~~tDwGFt~f~dL~kl~~psp~~Ppfleeg~l~ItvyVRvlkdPTGVLWHsF----~nYnSK  188 (1089)
T COG5077         113 PKYPTIEYINKSHHRFSMESTDWGFTNFIDLNKLIEPSPGRPPFLEEGTLVITVYVRVLKDPTGVLWHSF----LNYNSK  188 (1089)
T ss_pred             CCCCchhhhhcccccccccccccchhhhhhhhhhcCCCCCCCCcccCCeEEEEEEEEEEeCCccceeecc----cccccc
Confidence            73 322223467799998889999999999999873      689999999999999996  57899754    569999


Q ss_pred             CccC-eEEEEeceeeeehhhhhHHHhHHHHhhhhhccccccccccccce
Q 001419          212 EKTD-AILKVVVKHFFIEKEVTSTLVMDSLYSGLKALEGQSKSKKTKAK  259 (1080)
Q Consensus       212 E~SD-V~LkV~vkKFyVsKnvLAT~YMnSLLqgLy~Le~Fres~Ks~i~  259 (1080)
                      +.|| |||          ||+|||||||||||.||+|..||+..+..++
T Consensus       189 keTGYVGl----------rNqGATCYmNSLlQslffi~~FRk~Vy~ipT  227 (1089)
T COG5077         189 KETGYVGL----------RNQGATCYMNSLLQSLFFIAKFRKDVYGIPT  227 (1089)
T ss_pred             cceeeeee----------ccCCceeeHHHHHHHHHHHHHHHHHhhcCCC
Confidence            9999 999          9999999999999999999999988776554

>cd03772 MATH_HAUSP Herpesvirus-associated ubiquitin-specific protease (HAUSP, also known as USP7) family, N-terminal MATH (TRAF-like) domain; composed of proteins similar to human HAUSP, an enzyme that specifically catalyzes the deubiquitylation of p53 and MDM2, hence playing an important role in the p53-MDM2 pathway Back     alignment and domain information
>cd03775 MATH_Ubp21p Ubiquitin-specific protease 21 (Ubp21p) family, MATH domain; composed of fungal proteins with similarity to Ubp21p of fission yeast Back     alignment and domain information
>cd03773 MATH_TRIM37 Tripartite motif containing protein 37 (TRIM37) family, MATH domain; TRIM37 is a peroxisomal protein and is a member of the tripartite motif (TRIM) protein subfamily, also known as the RING-B-box-coiled-coil (RBCC) subfamily of zinc-finger proteins Back     alignment and domain information
>cd00121 MATH MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins Back     alignment and domain information
>cd03774 MATH_SPOP Speckle-type POZ protein (SPOP) family, MATH domain; composed of proteins with similarity to human SPOP Back     alignment and domain information
>cd00270 MATH_TRAF_C Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link cell surface TNFRs and receptors of the interleukin-1/Toll-like family to downstream kinase signaling cascades which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems Back     alignment and domain information
>cd03776 MATH_TRAF6 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF6 subfamily, TRAF domain, C-terminal MATH subdomain; composed of proteins with similarity to human TRAF6, including the Drosophila protein DTRAF2 Back     alignment and domain information
>cd03781 MATH_TRAF4 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF4 subfamily, TRAF domain, C-terminal MATH subdomain; composed of proteins with similarity to human TRAF4, including the Drosophila protein DTRAF1 Back     alignment and domain information
>cd03780 MATH_TRAF5 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF5 subfamily, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses Back     alignment and domain information
>PF00917 MATH: MATH domain; InterPro: IPR002083 Although apparently functionally unrelated, intracellular TRAFs and extracellular meprins share a conserved region of about 180 residues, the meprin and TRAF homology (MATH) domain [] Back     alignment and domain information
>cd03779 MATH_TRAF1 Tumor Necrosis Factor Receptor (TNFR) Associated Factor (TRAF) family, TRAF1 subfamily, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses Back     alignment and domain information
>cd03777 MATH_TRAF3 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF3 subfamily, TRAF domain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses Back     alignment and domain information
>cd03778 MATH_TRAF2 Tumor Necrosis Factor Receptor (TNFR) Associated Factor (TRAF) family, TRAF2 subfamily, TRAF domain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses Back     alignment and domain information
>cd03771 MATH_Meprin Meprin family, MATH domain; Meprins are multidomain, highly glycosylated extracellular metalloproteases, which are either anchored to the membrane or secreted into extracellular spaces Back     alignment and domain information
>smart00061 MATH meprin and TRAF homology Back     alignment and domain information
>KOG1863 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd03783 MATH_Meprin_Alpha Meprin family, Alpha subunit, MATH domain; Meprins are multidomain extracellular metalloproteases capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides Back     alignment and domain information
>cd03782 MATH_Meprin_Beta Meprin family, Beta subunit, MATH domain; Meprins are multidomain extracellular metalloproteases capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides Back     alignment and domain information
>KOG1987 consensus Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains [Cell cycle control, cell division, chromosome partitioning; General function prediction only] Back     alignment and domain information
>PHA03098 kelch-like protein; Provisional Back     alignment and domain information
>PHA02713 hypothetical protein; Provisional Back     alignment and domain information
>PHA02790 Kelch-like protein; Provisional Back     alignment and domain information
>KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification] Back     alignment and domain information
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins Back     alignment and domain information
>PTZ00266 NIMA-related protein kinase; Provisional Back     alignment and domain information
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics] Back     alignment and domain information
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PTZ00121 MAEBL; Provisional Back     alignment and domain information
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics] Back     alignment and domain information
>PTZ00121 MAEBL; Provisional Back     alignment and domain information
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton] Back     alignment and domain information
>PRK00247 putative inner membrane protein translocase component YidC; Validated Back     alignment and domain information
>PTZ00266 NIMA-related protein kinase; Provisional Back     alignment and domain information
>cd02666 Peptidase_C19J A subfamily of Peptidase C19 Back     alignment and domain information
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton] Back     alignment and domain information
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac Back     alignment and domain information
>KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification] Back     alignment and domain information
>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG2891 consensus Surface glycoprotein [General function prediction only] Back     alignment and domain information
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins Back     alignment and domain information
>KOG3054 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PRK00247 putative inner membrane protein translocase component YidC; Validated Back     alignment and domain information
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins Back     alignment and domain information
>KOG2891 consensus Surface glycoprotein [General function prediction only] Back     alignment and domain information
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated Back     alignment and domain information
>PRK13428 F0F1 ATP synthase subunit delta; Provisional Back     alignment and domain information
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B Back     alignment and domain information
>PF07946 DUF1682: Protein of unknown function (DUF1682); InterPro: IPR012879 The members of this family are all hypothetical eukaryotic proteins of unknown function Back     alignment and domain information
>cd02671 Peptidase_C19O A subfamily of Peptidase C19 Back     alignment and domain information
>PRK14472 F0F1 ATP synthase subunit B; Provisional Back     alignment and domain information
>PRK14471 F0F1 ATP synthase subunit B; Provisional Back     alignment and domain information
>PF07946 DUF1682: Protein of unknown function (DUF1682); InterPro: IPR012879 The members of this family are all hypothetical eukaryotic proteins of unknown function Back     alignment and domain information
>cd02664 Peptidase_C19H A subfamily of Peptidase C19 Back     alignment and domain information
>PRK09510 tolA cell envelope integrity inner membrane protein TolA; Provisional Back     alignment and domain information
>KOG3054 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PRK09174 F0F1 ATP synthase subunit B'; Validated Back     alignment and domain information
>PRK06231 F0F1 ATP synthase subunit B; Validated Back     alignment and domain information
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms] Back     alignment and domain information
>PRK14474 F0F1 ATP synthase subunit B; Provisional Back     alignment and domain information
>PRK13453 F0F1 ATP synthase subunit B; Provisional Back     alignment and domain information
>PRK08475 F0F1 ATP synthase subunit B; Validated Back     alignment and domain information
>PRK07352 F0F1 ATP synthase subunit B; Validated Back     alignment and domain information
>PRK13454 F0F1 ATP synthase subunit B'; Provisional Back     alignment and domain information
>cd02668 Peptidase_C19L A subfamily of Peptidase C19 Back     alignment and domain information
>PRK07353 F0F1 ATP synthase subunit B'; Validated Back     alignment and domain information
>PRK13455 F0F1 ATP synthase subunit B; Provisional Back     alignment and domain information
>PRK13460 F0F1 ATP synthase subunit B; Provisional Back     alignment and domain information
>COG3064 TolA Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>TIGR02794 tolA_full TolA protein Back     alignment and domain information
>PRK14475 F0F1 ATP synthase subunit B; Provisional Back     alignment and domain information
>CHL00019 atpF ATP synthase CF0 B subunit Back     alignment and domain information
>PRK06569 F0F1 ATP synthase subunit B'; Validated Back     alignment and domain information
>cd02659 peptidase_C19C A subfamily of Peptidase C19 Back     alignment and domain information
>COG4499 Predicted membrane protein [Function unknown] Back     alignment and domain information
>PRK14473 F0F1 ATP synthase subunit B; Provisional Back     alignment and domain information
>COG3064 TolA Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>KOG2357 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF06098 Radial_spoke_3: Radial spoke protein 3; InterPro: IPR009290 This family consists of several radial spoke protein 3 (RSP3) sequences Back     alignment and domain information
>PRK08476 F0F1 ATP synthase subunit B'; Validated Back     alignment and domain information
>PRK06568 F0F1 ATP synthase subunit B; Validated Back     alignment and domain information
>cd02657 Peptidase_C19A A subfamily of Peptidase C19 Back     alignment and domain information
>cd02667 Peptidase_C19K A subfamily of Peptidase C19 Back     alignment and domain information
>cd02661 Peptidase_C19E A subfamily of Peptidase C19 Back     alignment and domain information
>PRK13461 F0F1 ATP synthase subunit B; Provisional Back     alignment and domain information
>cd02658 Peptidase_C19B A subfamily of Peptidase C19 Back     alignment and domain information
>cd02662 Peptidase_C19F A subfamily of Peptidase C19 Back     alignment and domain information
>TIGR01144 ATP_synt_b ATP synthase, F0 subunit b Back     alignment and domain information
>TIGR02794 tolA_full TolA protein Back     alignment and domain information
>KOG3809 consensus Microtubule-binding protein MIP-T3 [Cytoskeleton] Back     alignment and domain information
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd02660 Peptidase_C19D A subfamily of Peptidase C19 Back     alignment and domain information
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals Back     alignment and domain information
>PRK05759 F0F1 ATP synthase subunit B; Validated Back     alignment and domain information
>cd02663 Peptidase_C19G A subfamily of Peptidase C19 Back     alignment and domain information
>PF00443 UCH: Ubiquitin carboxyl-terminal hydrolase; InterPro: IPR001394 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>KOG4848 consensus Extracellular matrix-associated peroxidase [Extracellular structures; Defense mechanisms] Back     alignment and domain information
>PRK06568 F0F1 ATP synthase subunit B; Validated Back     alignment and domain information
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) Back     alignment and domain information
>cd02669 Peptidase_C19M A subfamily of Peptidase C19 Back     alignment and domain information
>KOG4786 consensus Ubinuclein, nuclear protein interacting with cellular and viral transcription factors [Transcription; Signal transduction mechanisms] Back     alignment and domain information
>KOG1103 consensus Predicted coiled-coil protein [Function unknown] Back     alignment and domain information
>PRK14474 F0F1 ATP synthase subunit B; Provisional Back     alignment and domain information
>KOG2963 consensus RNA-binding protein required for 60S ribosomal subunit biogenesis [Translation, ribosomal structure and biogenesis] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1080
2f1z_A522 Crystal Structure Of Hausp Length = 522 1e-07
2f1x_A161 Crystal Structure Of The Traf-Like Domain Of HauspU 2e-07
2f1y_A159 Crystal Structure Of The Traf-Like Domain Of HauspU 2e-07
2f1w_A158 Crystal Structure Of The Traf-Like Domain Of HauspU 4e-07
1yy6_A155 The Crystal Strucure Of The N-Terminal Domain Of Ha 4e-07
2xxn_A143 Structure Of The Virf4-Hausp Traf Domain Complex Le 8e-07
>pdb|2F1Z|A Chain A, Crystal Structure Of Hausp Length = 522 Back     alignment and structure 
Iteration: 1

 Score = 55.8 bits (133), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/129 (33%), Positives = 65/129 (50%), Gaps = 11/129 (8%)
Query: 70  YTWRIEKFSQISKRELRSNAFEVGGYKWYILIYPQGCDVCNH---LSLFL-CVANHDKLL 125
           + + +E+FS++S+  L    F V    W I++ P+      H   +  FL C A  D   
Sbjct: 33  FQFTVERFSRLSESVLSPPCF-VRNLPWKIMVMPRFYPDRPHQKSVGFFLQCNAESDS-- 89
Query: 126 PGWSHFAQFTIAVVN-RDPKKSKYSDTLHRFWKKEHDWGWKKFMELSKVSD---GFKDGD 181
             WS  AQ  + ++N RD +KS      H F+ KE+DWG+  FM  S+V+D   GF D D
Sbjct: 90  TSWSCHAQAVLKIINYRDDEKSFSRRISHLFFHKENDWGFSNFMAWSEVTDPEKGFIDDD 149
Query: 182 TLIIKAQVQ 190
            +  +  VQ
Sbjct: 150 KVTFEVFVQ 158
>pdb|2F1X|A Chain A, Crystal Structure Of The Traf-Like Domain Of HauspUSP7 Bound To A P53 Peptide Length = 161 Back     alignment and structure
>pdb|2F1Y|A Chain A, Crystal Structure Of The Traf-Like Domain Of HauspUSP7 Bound To A Mdm2 Peptide Length = 159 Back     alignment and structure
>pdb|2F1W|A Chain A, Crystal Structure Of The Traf-Like Domain Of HauspUSP7 Length = 158 Back     alignment and structure
>pdb|1YY6|A Chain A, The Crystal Strucure Of The N-Terminal Domain Of HauspUSP7 Complexed With An Ebna1 Peptide Length = 155 Back     alignment and structure
>pdb|2XXN|A Chain A, Structure Of The Virf4-Hausp Traf Domain Complex Length = 143 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1080
2foj_A155 Ubiquitin carboxyl-terminal hydrolase 7; MATH doma 4e-39
3ivv_A145 Speckle-type POZ protein; protein binding, nucleus 1e-28
2f1z_A522 Ubiquitin carboxyl-terminal hydrolase 7; hausp, US 5e-27
1lb6_A160 TNF receptor-associated factor 6; TRAF6-CD40 compl 5e-25
1d00_A168 Tumor necrosis factor receptor associated protein 1e-24
1ca9_A192 TRAF2, protein (TNF receptor associated factor 2); 4e-24
2gkw_A192 TNF receptor-associated factor 3; CD40, NF-KB sign 7e-24
1flk_A228 TNF receptor associated factor 3; TNF signaling, T 6e-22
3hqi_A312 Speckle-type POZ protein; SPOP, ubiquitin, puckere 6e-14
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-06
3lvg_D190 LCB, clathrin light chain B; SELF assembly, coated 2e-08
>2foj_A Ubiquitin carboxyl-terminal hydrolase 7; MATH domain, hydrolase; 1.60A {Homo sapiens} PDB: 1yze_A 1yy6_A 2foo_A 2fop_A 3mqr_A 3mqs_C 2f1w_A 2f1x_A 2f1y_A 2xxn_A Length = 155 Back     alignment and structure
 Score =  141 bits (358), Expect = 4e-39
 Identities = 42/149 (28%), Positives = 69/149 (46%), Gaps = 12/149 (8%)

Query: 52  DTDDDDDGWPKPSELYGKYTWRIEKFSQISKRELRSNAFEVGGYKWYILIYPQGCDVCN- 110
           + D +DD           + + +E+FS++S+  + S    V    W I++ P+       
Sbjct: 6   EEDMEDD---TSWRSEATFQFTVERFSRLSES-VLSPPCFVRNLPWKIMVMPRFYPDRPH 61

Query: 111 --HLSLFLCVANHDKLLPGWSHFAQFTIAVVN-RDPKKSKYSDTLHRFWKKEHDWGWKKF 167
              +  FL   N +     WS  AQ  + ++N RD +KS      H F+ KE+DWG+  F
Sbjct: 62  QKSVGFFL-QCNAESDSTSWSCHAQAVLKIINYRDDEKSFSRRISHLFFHKENDWGFSNF 120

Query: 168 MELSKVSD---GFKDGDTLIIKAQVQVIS 193
           M  S+V+D   GF D D +  +  VQ  +
Sbjct: 121 MAWSEVTDPEKGFIDDDKVTFEVFVQADA 149
>3ivv_A Speckle-type POZ protein; protein binding, nucleus, UBL conjugation pathway, ligase; 1.25A {Homo sapiens} PDB: 3ivq_A 3ivb_A 3hsv_A 3hqh_A 3hqm_A 3hql_A 2cr2_A Length = 145 Back     alignment and structure
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens} Length = 522 Back     alignment and structure
>1lb6_A TNF receptor-associated factor 6; TRAF6-CD40 complex, signaling protein; 1.80A {Homo sapiens} SCOP: b.8.1.1 PDB: 1lb5_A 1lb4_A Length = 160 Back     alignment and structure
>1d00_A Tumor necrosis factor receptor associated protein 2; B-sandwich, protein-peptide complex, apoptosis; 2.00A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1ca4_A 1d0j_A 1f3v_B 1czy_A 1d01_A 1d0a_A Length = 168 Back     alignment and structure
>1ca9_A TRAF2, protein (TNF receptor associated factor 2); TNF signaling, TRAF, adapter protein, cell surviVal; 2.30A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1qsc_A 1czz_A Length = 192 Back     alignment and structure
>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A Length = 192 Back     alignment and structure
>1flk_A TNF receptor associated factor 3; TNF signaling, TRAF3, CD40-binding protein, apoptosis; 2.80A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1fll_A Length = 228 Back     alignment and structure
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A Length = 312 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 1080
d2cr2a1146 b.8.1.1 (A:8-153) Speckle-type poz protein SPOP {H 9e-24
d1lb6a_155 b.8.1.1 (A:) TNF receptor associated factor 6 (TRA 8e-23
d1czya1152 b.8.1.1 (A:350-501) TNF receptor associated factor 3e-22
d1l0aa1155 b.8.1.1 (A:350-504) TNF receptor associated factor 9e-22
>d2cr2a1 b.8.1.1 (A:8-153) Speckle-type poz protein SPOP {Human (Homo sapiens) [TaxId: 9606]} Length = 146 Back     information, alignment and structure

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: MATH domain
domain: Speckle-type poz protein SPOP
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 96.0 bits (238), Expect = 9e-24
 Identities = 34/137 (24%), Positives = 61/137 (44%), Gaps = 16/137 (11%)

Query: 68  GKYTWRIEKFSQISK---RELRSNAFEVGG---YKWYILIYPQGCDVCN--HLSLFLCVA 119
             Y W I  FS   +     ++S+ F  G     KW + + P+G D  +  +LSL+L + 
Sbjct: 5   FSYMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLLLV 64

Query: 120 NHDKLLPGWSHFAQFTIAVVNRDPKKSKY-SDTLHRFWKKEHDWGWKKFMELSKVSD--- 175
           +  K        A+F  +++N   +++K         + +  DWG+KKF+    + D   
Sbjct: 65  SCPK----SEVRAKFKFSILNAKGEETKAMESQRAYRFVQGKDWGFKKFIRRDFLLDEAN 120

Query: 176 GFKDGDTLIIKAQVQVI 192
           G    D L +  +V V+
Sbjct: 121 GLLPDDKLTLFCEVSVV 137
>d1lb6a_ b.8.1.1 (A:) TNF receptor associated factor 6 (TRAF6) {Human (Homo sapiens) [TaxId: 9606]} Length = 155 Back     information, alignment and structure
>d1czya1 b.8.1.1 (A:350-501) TNF receptor associated factor 2 (TRAF2) {Human (Homo sapiens) [TaxId: 9606]} Length = 152 Back     information, alignment and structure
>d1l0aa1 b.8.1.1 (A:350-504) TNF receptor associated factor 3 (TRAF3) {Human (Homo sapiens) [TaxId: 9606]} Length = 155 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1080
d1czya1152 TNF receptor associated factor 2 (TRAF2) {Human (H 99.83
d1l0aa1155 TNF receptor associated factor 3 (TRAF3) {Human (H 99.82
d2cr2a1146 Speckle-type poz protein SPOP {Human (Homo sapiens 99.82
d1lb6a_155 TNF receptor associated factor 6 (TRAF6) {Human (H 99.81
d1r29a_122 B-cell lymphoma 6 (Bcl6) protein BTB domain {Human 97.79
d1buoa_121 Promyelocytic leukaemia zinc finger (PLZF) protein 97.52
d1nbfa_347 Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAU 95.38
d2gfoa1348 Ubiquitin carboxyl-terminal hydrolase 8 {Human (Ho 95.07
d1vjva_397 Ubiquitin carboxyl-terminal hydrolase 6 {Baker's y 94.33
d2hd5a1336 Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Hum 94.19
d2ayna1383 Ubiquitin carboxyl-terminal hydrolase 14 {Human (H 93.97
>d1czya1 b.8.1.1 (A:350-501) TNF receptor associated factor 2 (TRAF2) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: MATH domain
domain: TNF receptor associated factor 2 (TRAF2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=6.5e-21  Score=160.63  Aligned_cols=126  Identities=26%  Similarity=0.433  Sum_probs=99.9

Q ss_pred             CCEEEEEECCCCCCCC-------CEEECCCEEEC--CEEEEEEEEECCCC--CCCEEEEEEEEECCCCC-CCCCEEEEEE
Q ss_conf             7589999848543469-------91207947868--92999999947898--99808999997226899-9997299999
Q 001419           67 YGKYTWRIEKFSQISK-------RELRSNAFEVG--GYKWYILIYPQGCD--VCNHLSLFLCVANHDKL-LPGWSHFAQF  134 (1080)
Q Consensus        67 ~gtFtWkIeNFSkLke-------e~i~Sp~FevG--G~kWrIlVYPrGn~--~~dyLSLYLec~~~esl-s~dWSI~AqF  134 (1080)
                      .|+|+|+|+|||.+++       ..++||.|+++  ||+|+|.+||+|++  ..+||||||++.....+ ...|.+.++|
T Consensus         2 ~g~f~W~I~nFs~l~~~~~~~~~~~~~Sp~F~~g~~Gy~w~l~~yP~G~~~~~~~~lSlyL~l~~~~~d~~~~~~~~~~~   81 (152)
T d1czya1           2 DGVFIWKISDFPRKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTGRGTHLSLFFVVMKGPNDALLRWPFNQKV   81 (152)
T ss_dssp             SSEEEEEECSHHHHHHHHHTTSCCCEECCCEESSTTSCEEEEEEETTCCGGGTTTEEEEEEEEECCTTGGGSCSSCCCCE
T ss_pred             CCEEEEEECCCHHHHHHHHCCCCCEEECCCEECCCCCEEEEEEEEECCCCCCCCCEEEEEEEECCCCCCCCCCCCEEEEE
T ss_conf             97899999992898776542798568891988089982999999818999889988999999726776766665366678


Q ss_pred             EEEEEECCCCCCCCC----C-CCEE----CCCCCCCCCCCCCCCCCCCC--CCCCCCCEEEEEEEEEEE
Q ss_conf             999993899983003----4-4022----03799876434431311213--553349969999999998
Q 001419          135 TIAVVNRDPKKSKYS----D-TLHR----FWKKEHDWGWKKFMELSKVS--DGFKDGDTLIIKAQVQVI  192 (1080)
Q Consensus       135 tL~LINqdGkkS~sk----e-ssh~----Fs~ke~dWGwskFIswddLe--sGFLVDDsLtIEv~VkVi  192 (1080)
                      +|.|+|+.+.+....    . ..+.    |...+.+|||.+||++++|+  +|||+||+|+|+|.|.|.
T Consensus        82 ~~~l~d~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~G~~~fi~~~~L~~~~gfl~dD~l~I~~~V~v~  150 (152)
T d1czya1          82 TLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGCPLFCPVSKMEAKNSYVRDDAIFIKAIVDLT  150 (152)
T ss_dssp             EEEECCTTSSCCEEEEECCCTTSGGGSCCSSSBCCCEEEEEEEETCCCCCSTTTSCSSCEEEEEEECCT
T ss_pred             EEEEECCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHEEEHHHHCCCCCCEECCEEEEEEEEEEC
T ss_conf             999974788854215512563422436777554366224558899994414894849999999999934
>d1l0aa1 b.8.1.1 (A:350-504) TNF receptor associated factor 3 (TRAF3) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cr2a1 b.8.1.1 (A:8-153) Speckle-type poz protein SPOP {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1lb6a_ b.8.1.1 (A:) TNF receptor associated factor 6 (TRAF6) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nbfa_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2gfoa1 d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal hydrolase 8 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vjva_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2hd5a1 d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ayna1 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hydrolase 14 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure