Citrus Sinensis ID: 001423

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------108

MESVSEGLLQLPYRTLEEEQKSGGGSSPSEGNPTDAVIFVGISLVLGIACRHLLRGTRVPYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLAVFLPALLFESSFAMEVHQIKRCLVQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLGGLLSATDPVAVVALLKELGASKKLNTIIEGESLMNDGTAIVVYQLFFQMVLGKSFGWGAIIKFLAQVSLGAVGMGLAFGIASVLWLGFIFNDTVIEIALTLAVSYIAFFTAQEGADVSGVLTVMTLGMFYAAVARTAFKGESQQSLHYFWEMVAYIANTLIFILSGVVIAEGILGNDKIFQNHGNSWGYLILLYIFVQVSRLFVVGTLYPVLRNFGYGLEWKEAIILVWSGLRGAVALSLSLSVKRSSGGSSLITSETGTLFVFFTGGIVFLTLIVNGSTTQYILHLLDMDKLSATKRRILDYTKYEMLNTAFKTFGDLGDDEELGPVDWPTVKRYIRCLNDLEGVPMHPHSASETGDSLDPTNLRDIRIRLLNGVQAAYWAMLDEGRITQTAANILMQSVDEGIDLASNELCDWRGLKDNVSFPNYYKFLQTSMFPQKLITYFTVERLEFACSICAAFLRAHKIARQQLHDFIGDSGIASVVIEESKVEGEDARKFLEDVRVNFPQVLHVVKTRQVTYSVLNHLIDYIQNLEKVGLLEEKEMLHLHDAVQWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGKPYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSRILLPQIFEKLTMQDMRALIAERSKMTTCLRGEIIEIPYHCIGFLLEGFIKTHGLQEELITPPAALIPSQGNLSFRSAETSGVEAVSFSHQGSCYLVETRARVIIFDIAAFEADKAVVRRTSSLFSHSSDQPHKSLSREHGNLMSWPEHFYKARQQKQNSEETDRKANSLSARAMQLSIFGNMVDVQRRSRSFATGTQTMQSHSLSFPSIPSHLNRRLVSVRSEGATTVREKLEVSRSTGQIPAPPSQNAGANESHVIDYSSDDSGAEDELIVRIDSPSLLSFPQDS

cHHcccccccccccccHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHcccccccHHHHHHHHHHccccccccEEEEcccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEEEccccHHHHHHHHHHcccccccccccccccccEEEEEEEEEEHHHHHHHcccHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHccccccccccccEEEEEEEEcccEEEEEccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHccccEEEEEEcEEEEEcccEEEEccccccccccccccccccccccccccccccccccccccccccccEEEccEEEEEEcEEEEEEEcccccccHHHHccccccccccccccccccccccccccccccHHHHHHHcccccHHHHHccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccccccccccccccccccccccccccccccccccEEEEEcccccccccccc

ccHHHcccccccHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHEEcccccccccccccccccccccEEEEEEccHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHcccHHHHHHHHHHcccccHHEHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHEEccHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHEHHHHHHHHHHHHHHHcccccccccccccccccEEEEEHEHEHHHHHHHHcccHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHccccHHHHHEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccccccEEEEEcccEEEEEEEHcccccEEEEEcccEEEEEEEcHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEcEEEEEccccEEEEEEcEEcccccccEEcccccEEccccccccccccccccccEccEcccccEEEEEEEEEEEEEEcccccccHHHccccccccccccccccccccHHccccccccccccccccccccHHHHccccccHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccEEEcccccHHHHHHccccccccccccccccccccccccccccccccccccccEEEEEccccEEEEcccc

mesvsegllqlpyrtleeeqksgggsspsegnptdAVIFVGISLVLGIACRHLLRGTRVPYTVALLIIGIALgsleygtshqlgkigdgirlwasidpdLLLAVFLPALLFESSFAMEVHQIKRCLVQMILLAGPGVMISTFFLGAAlkltfpydwswktslllggllsatDPVAVVALLKELGASKKLNTIIEGESLMNDGTAIVVYQLFFQMVLGKSFGWGAIIKFLAQVSLGAVGMGLAFGIASVLWLGFIFNDTVIEIALTLAVSYIAFFtaqegadvSGVLTVMTLGMFYAAVARTafkgesqqSLHYFWEMVAYIANTLIFILSGVVIAegilgndkifqnhgnSWGYLILLYIFVQVSRLFVVGTLYPVLRNFGYGLEWKEAIILVWSGLRGAVALSLSLSVkrssggsslitsetgtLFVFFTGGIVFLTLIVNGSTTQYILHLLDMDKLSATKRRILDYTKYEMLNTAFKtfgdlgddeelgpvdwptvKRYIRCLndlegvpmhphsasetgdsldptnlRDIRIRLLNGVQAAYWAMLDEGRITQTAANILMQSVDEGIDLASNelcdwrglkdnvsfpnyykflqtsmfpqklITYFTVERLEFACSICAAFLRAHKIARQQLHdfigdsgiASVVIEESKVEGEDARKFLEDVRVNFPQVLHVVKTRQVTYSVLNHLIDYIQNLEKVGLLEEKEMLHLHDAVQWTSKsirnkhslhpvfthgsnlglyevligkpymsdmvtDSVVLCFFIESDKILSIlrsdpaveDFLWQQSAIALSRILLPQIFEKLTMQDMRALIAERSKMTTCLrgeiieipyHCIGFLLEGFikthglqeelitppaalipsqgnlsfrsaetsgveavsFSHQGSCYLVETRARVIIFDIAAFEADKAVVRRTSslfshssdqphkslsrehgnlmswpEHFYKARQQkqnseetdrKANSLSARAMQLSIFGNMVdvqrrsrsfatgtqtmqshslsfpsipshlnrrlvsvrsegattVREKLEvsrstgqipappsqnaganeshvidyssddsgaedelivridspsllsfpqds

mesvsegllQLPYRTLEEEQKsgggsspsegnpTDAVIFVGISLVLGIACRHLLRGTRVPYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLAVFLPALLFESSFAMEVHQIKRCLVQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLGGLLSATDPVAVVALLKelgaskklnTIIEGESLMNDGTAIVVYQLFFQMVLGKSFGWGAIIKFLAQVSLGAVGMGLAFGIASVLWLGFIFNDTVIEIALTLAVSYIAFFTAQEGADVSGVLTVMTLGMFYAAVARTAFKGESQQSLHYFWEMVAYIANTLIFILSGVVIAEGILGNDKIFQNHGNSWGYLILLYIFVQVSRLFVVGTLYPVLRNFGYGLEWKEAIILVWSGLRGAVALSLSLSVKrssggsslitsetGTLFVFFTGGIVFLTLIVNGSTTQYILHLLDMDKLSATKRRILDYTKYEMLNTAFktfgdlgddeelgpvdWPTVKRYIRCLNDLEGVpmhphsasetgdsldptNLRDIRIRLLNGVQAAYWAMLDEGRITQTAANILMQSVDEGIDLASNELCDWRGLKDNVSFPNYYKFLQTSMFPQKLITYFTVERLEFACSICAAFLRAHKIARQQLHDFIGDSGIASVVIEESKVEGEDARKFLEDVRVNFPQVLHVVKTRQVTYSVLNHLIDYIQNLEKVGLLEEKEMLHLHDAVQWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGKPYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSRILLPQIFEKLTMQDMRALIAERSKMTTCLRGEIIEIPYHCIGFLLEGFIKTHGLQEELITPPAALIPSQGNLSFRSAETSGVEAVSFSHQGSCYLVETRARVIIFDIAAFEADKAVVRRTSSlfshssdqphkslsREHGNLMSWPEHFYKARQQKQNSEETDRKANSLSARAMQLSIFGNMVDVQRRSRSFATGTQtmqshslsfpsipshlNRRLVSVrsegattvreklevsrstgqipappsqnaganeSHVIDYSSDDSGAEDELivridspsllsfpqds

MESVSEGLLQLPYRTLeeeqksgggsspsegNPTDAVIFVGISLVLGIACRHLLRGTRVPYTValliigialgSLEYGTSHQLGKIGDGIRLWASIdpdlllavflpallfESSFAMEVHQIKRCLVQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTslllggllsATDPVAVVALLKELGASKKLNTIIEGESLMNDGTAIVVYQLFFQMVLGKSFGWGAIIKFLAQVSLGAVGMGLAFGIASVLWLGFIFNDTVIEIALTLAVSYIAFFTAQEGADVSGVLTVMTLGMFYAAVARTAFKGESQQSLHYFWEMVAYIANTLIFILSGVVIAEGILGNDKIFQNHGNSWGYLILLYIFVQVSRLFVVGTLYPVLRNFGYGLEWKEAIILVWsglrgavalslslsvkrssggsslITSETGTLFVFFTGGIVFLTLIVNGSTTQYILHLLDMDKLSATKRRILDYTKYEMLNTAFKTFGDLGDDEELGPVDWPTVKRYIRCLNDLEGVPMHPHSASETGDSLDPTNLRDIRIRLLNGVQAAYWAMLDEGRITQTAANILMQSVDEGIDLASNELCDWRGLKDNVSFPNYYKFLQTSMFPQKLITYFTVERLEFACSICAAFLRAHKIARQQLHDFIGDSGIASVVIEESKVEGEDARKFLEDVRVNFPQVLHVVKTRQVTYSVLNHLIDYIQNLEKVGLLEEKEMLHLHDAVQWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGKPYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSRILLPQIFEKLTMQDMRALIAERSKMTTCLRGEIIEIPYHCIGFLLEGFIKTHGLQEELITPPAALIPSQGNLSFRSAETSGVEAVSFSHQGSCYLVETRARVIIFDIAAFEADKAVVRRTSSLFSHSSDQPHKSLSREHGNLMSWPEHFYKARQQKQNSEETDRKANSLSARAMQLSIFGNMVDVQRRSRSFATGTQTMQSHSLSFPSIPSHLNRRLVSVRSEGATTVREKLEVSRSTGQIPAPPSQNAGANESHVIDYSSDDSGAEDELIVRIDSPSLLSFPQDS

***********************************AVIFVGISLVLGIACRHLLRGTRVPYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLAVFLPALLFESSFAMEVHQIKRCLVQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLGGLLSATDPVAVVALLKELGASKKLNTIIEGESLMNDGTAIVVYQLFFQMVLGKSFGWGAIIKFLAQVSLGAVGMGLAFGIASVLWLGFIFNDTVIEIALTLAVSYIAFFTAQEGADVSGVLTVMTLGMFYAAVARTAFKGESQQSLHYFWEMVAYIANTLIFILSGVVIAEGILGNDKIFQNHGNSWGYLILLYIFVQVSRLFVVGTLYPVLRNFGYGLEWKEAIILVWSGLRGAVALSLSLSVK*****SSLITSETGTLFVFFTGGIVFLTLIVNGSTTQYILHLLDMDKLSATKRRILDYTKYEMLNTAFKTFGDLGDDEELGPVDWPTVKRYIRCLNDLEGV*****************NLRDIRIRLLNGVQAAYWAMLDEGRITQTAANILMQSVDEGIDLASNELCDWRGLKDNVSFPNYYKFLQTSMFPQKLITYFTVERLEFACSICAAFLRAHKIARQQLHDFIGDSGIASVVIEESKVEGEDARKFLEDVRVNFPQVLHVVKTRQVTYSVLNHLIDYIQNLEKVGLLEEKEMLHLHDAVQWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGKPYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSRILLPQIFEKLTMQDMRALIAERSKMTTCLRGEIIEIPYHCIGFLLEGFIKTHGLQEELITPPAALIPS***L********GVEAVSFSHQGSCYLVETRARVIIFDIAAFEADKAVVR***********************************************************IF***********************************************************************************************************

********************************PTDAVIFVGISLVLGIACRHLLRGTRVPYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLAVFLPALLFESSFAMEVHQIKRCLVQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLGGLLSATDPVAVVALLKELGASKKLNTIIEGESLMNDGTAIVVYQLFFQMVLGKSFGWGAIIKFLAQVSLGAVGMGLAFGIASVLWLGFIFNDTVIEIALTLAVSYIAFFTAQEGADVSGVLTVMTLGMFYAAVARTAFKGESQQSLHYFWEMVAYIANTLIFILSGVVIAEGILGNDKIFQNHGNSWGYLILLYIFVQVSRLFVVGTLYPVLRNFGYGLEWKEAIILVWSGLRGAVALSLSLSVKRSSGGSSLITSETGTLFVFFTGGIVFLTLIVNGSTTQYILHLLDMDKL**TKRRILDYTKYEMLNTAFKTFGDLGDDEELGPVDWPTVKRYIRCLNDLE****************DPTNLRDIRIRLLNGVQAAYWAMLDEGRITQTAANILMQSVDEGIDLASNELCDWRGLKDNVSFPNYYKFLQTSMFPQKLITYFTVERLEFACSICAAFLRAHKIARQQLHDFIGDSGIASVVIEESKVEGEDARKFLEDVRVNFPQVLHVVKTRQVTYSVLNHLIDYIQNLEKVGLLEEKEMLHLHDAVQW************PVFTHGSNLGLYEVLIGKPYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSRILLPQIFEKLTMQDMRALIAERSKMTTCLRGEIIEIPYHCIGFLLEGFIKTHGLQEELITPPAALIPSQG***************SFSHQGSCYLVETRARVIIFDIAAF***************************************************************MQLSIFGNMVD**************************************************************************************IVRIDSPS**S*****

MESVSEGLLQLPYRTL***************NPTDAVIFVGISLVLGIACRHLLRGTRVPYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLAVFLPALLFESSFAMEVHQIKRCLVQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLGGLLSATDPVAVVALLKELGASKKLNTIIEGESLMNDGTAIVVYQLFFQMVLGKSFGWGAIIKFLAQVSLGAVGMGLAFGIASVLWLGFIFNDTVIEIALTLAVSYIAFFTAQEGADVSGVLTVMTLGMFYAAVARTAFKGESQQSLHYFWEMVAYIANTLIFILSGVVIAEGILGNDKIFQNHGNSWGYLILLYIFVQVSRLFVVGTLYPVLRNFGYGLEWKEAIILVWSGLRGAVALSLSLS*********LITSETGTLFVFFTGGIVFLTLIVNGSTTQYILHLLDMDKLSATKRRILDYTKYEMLNTAFKTFGDLGDDEELGPVDWPTVKRYIRCLNDLEGVPMH**********LDPTNLRDIRIRLLNGVQAAYWAMLDEGRITQTAANILMQSVDEGIDLASNELCDWRGLKDNVSFPNYYKFLQTSMFPQKLITYFTVERLEFACSICAAFLRAHKIARQQLHDFIGDSGIASVVIEESKVEGEDARKFLEDVRVNFPQVLHVVKTRQVTYSVLNHLIDYIQNLEKVGLLEEKEMLHLHDAVQWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGKPYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSRILLPQIFEKLTMQDMRALIAERSKMTTCLRGEIIEIPYHCIGFLLEGFIKTHGLQEELITPPAALIPSQGNLSFRSAETSGVEAVSFSHQGSCYLVETRARVIIFDIAAFEADKAVVRRTS***************REHGNLMSWPEHFYK*****************LSARAMQLSIFGNMVDVQRRSRS*************SFPSIPSHLNRRLVSVRSEGATTVR**********************NESHVIDYSSDDSGAEDELIVRIDSPSLLSFPQDS

*******L*QLPYRTLEEEQKSGGGSS*SEGNPTDAVIFVGISLVLGIACRHLLRGTRVPYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLAVFLPALLFESSFAMEVHQIKRCLVQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLGGLLSATDPVAVVALLKELGASKKLNTIIEGESLMNDGTAIVVYQLFFQMVLGKSFGWGAIIKFLAQVSLGAVGMGLAFGIASVLWLGFIFNDTVIEIALTLAVSYIAFFTAQEGADVSGVLTVMTLGMFYAAVARTAFKGESQQSLHYFWEMVAYIANTLIFILSGVVIAEGILGNDKIFQNHGNSWGYLILLYIFVQVSRLFVVGTLYPVLRNFGYGLEWKEAIILVWSGLRGAVALSLSLSVKRSSGGSSLITSETGTLFVFFTGGIVFLTLIVNGSTTQYILHLLDMDKLSATKRRILDYTKYEMLNTAFKTFGDLGDDEELGPVDWPTVKRYIRCLNDLEGVPMHPHSASETGDSLDPTNLRDIRIRLLNGVQAAYWAMLDEGRITQTAANILMQSVDEGIDLASNELCDWRGLKDNVSFPNYYKFLQTSMFPQKLITYFTVERLEFACSICAAFLRAHKIARQQLHDFIGDSGIASVVIEESKVEGEDARKFLEDVRVNFPQVLHVVKTRQVTYSVLNHLIDYIQNLEKVGLLEEKEMLHLHDAVQWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGKPYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSRILLPQIFEKLTMQDMRALIAERSKMTTCLRGEIIEIPYHCIGFLLEGFIKTHGLQEELITPPAALIPSQGNLSFRSAETSGVEAVSFSHQGSCYLVETRARVIIFDIAAFEAD******************************************************SLSA***********************************P***SHLNRRLVS************************************************DELIVRIDSPSLLSF****

oooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		1079	2.2.26 [Sep-21-2011]
Q9LKW9		1146	Sodium/hydrogen exchanger	yes	no	0.671	0.632	0.711	0.0
Q3YL57		756	Sodium/hydrogen exchanger	no	no	0.651	0.929	0.697	0.0
Q6UJY2		1175	Sodium/hydrogen exchanger	yes	no	0.491	0.451	0.243	1e-35
P26434		717	Sodium/hydrogen exchanger	yes	no	0.355	0.535	0.260	5e-30
Q8BUE1		797	Sodium/hydrogen exchanger	no	no	0.355	0.481	0.260	5e-30
Q6AI14		798	Sodium/hydrogen exchanger	yes	no	0.367	0.496	0.248	6e-28
Q4G0N8		1177	Sodium/hydrogen exchanger	no	no	0.441	0.404	0.238	3e-27
Q01345		759	Na(+)/H(+) exchanger beta	N/A	no	0.358	0.509	0.251	3e-27
Q61165		820	Sodium/hydrogen exchanger	no	no	0.360	0.474	0.254	2e-25
P48763		813	Sodium/hydrogen exchanger	no	no	0.343	0.456	0.240	4e-25

>sp\|Q9LKW9\|NHX7_ARATH Sodium/hydrogen exchanger 7 OS=Arabidopsis thaliana GN=NHX7 PE=1 SV=1	Back alignment and function desciption

 Score = 1034 bits (2674), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 533/749 (71%), Positives = 617/749 (82%), Gaps = 24/749 (3%)

Query: 11  LPYRTLEE--EQKSGGGSSPSEGNPTDAVIFVGISLVLGIACRHLLRGTRVPYTVALLII 68
           + YR LEE  +  S   SS  E +P DAV+FVG+SLVLGIA RHLLRGTRVPYTVALL+I
Sbjct: 9   MAYRFLEEATDSSSSSSSSKLESSPVDAVLFVGMSLVLGIASRHLLRGTRVPYTVALLVI 68

Query: 69  GIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLAVFLPALLFESSFAMEVHQIKRCLVQ 128
           GIALGSLEYG  H LGKIG GIR+W  IDP+LLLAVFLPALLFESSF+MEVHQIKRCL Q
Sbjct: 69  GIALGSLEYGAKHNLGKIGHGIRIWNEIDPELLLAVFLPALLFESSFSMEVHQIKRCLGQ 128

Query: 129 MILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLGGLLSATDPVAVVALLKELGASKK 188
           M+LLA PGV+IST  LG+ +K+TFPY+W WKTSLLLGGLLSATDPVAVVALLKELGASKK
Sbjct: 129 MVLLAVPGVLISTACLGSLVKVTFPYEWDWKTSLLLGGLLSATDPVAVVALLKELGASKK 188

Query: 189 LNTIIEGESLMNDGTAIVVYQLFFQMVLGKSFGWGAIIKFLAQVSLGAVGMGLAFGIASV 248
           L+TIIEGESLMNDGTAIVV+QLF +M +G++  W +IIKFL +V+LGAVG+GLAFGIASV
Sbjct: 189 LSTIIEGESLMNDGTAIVVFQLFLKMAMGQNSDWSSIIKFLLKVALGAVGIGLAFGIASV 248

Query: 249 LWLGFIFNDTVIEIALTLAVSYIAFFTAQEGADVSGVLTVMTLGMFYAAVARTAFKGESQ 308
           +WL FIFNDTVIEI LT+AVSY A++TAQE A  SGVLTVMTLGMFYAA ARTAFKG+SQ
Sbjct: 249 IWLKFIFNDTVIEITLTIAVSYFAYYTAQEWAGASGVLTVMTLGMFYAAFARTAFKGDSQ 308

Query: 309 QSLHYFWEMVAYIANTLIFILSGVVIAEGILGNDKIFQNHGNSWGYLILLYIFVQVSRLF 368
           +SLH+FWEMVAYIANTLIFILSGVVIAEGIL +DKI    GNSW +L LLY+++Q+SR+ 
Sbjct: 309 KSLHHFWEMVAYIANTLIFILSGVVIAEGILDSDKI-AYQGNSWRFLFLLYVYIQLSRVV 367

Query: 369 VVGTLYPVLRNFGYGLEWKEAIILVWSGLRGAVALSLSLSVKRSSGGSSLITSETGTLFV 428
           VVG LYP+L  FGYGL+WKE+IILVWSGLRGAVAL+LSLSVK+SSG S  I+ ETGTLF+
Sbjct: 368 VVGVLYPLLCRFGYGLDWKESIILVWSGLRGAVALALSLSVKQSSGNSH-ISKETGTLFL 426

Query: 429 FFTGGIVFLTLIVNGSTTQYILHLLDMDKLSATKRRILDYTKYEMLNTAFKTFGDLGDDE 488
           FFTGGIVFLTLIVNGSTTQ++L LL MD L A K+RIL+YTKYEMLN A + F DLGDDE
Sbjct: 427 FFTGGIVFLTLIVNGSTTQFVLRLLRMDILPAPKKRILEYTKYEMLNKALRAFQDLGDDE 486

Query: 489 ELGPVDWPTVKRYIRCLNDLEG-VPMHPHSASETGDSLDPTNLRDIRIRLLNGVQAAYWA 547
           ELGP DWPTV+ YI  L   EG +  HPH+ S+ G SLDP +L+DIR+R LNGVQA YW 
Sbjct: 487 ELGPADWPTVESYISSLKGSEGELVHHPHNGSKIG-SLDPKSLKDIRMRFLNGVQATYWE 545

Query: 548 MLDEGRITQTAANILMQSVDEGIDLASNELCDWRGLKDNVSFPNYYKFLQTSMFPQKLIT 607
           MLDEGRI++  ANILMQSVDE +D  S  LCDWRGLK +V+FPNYY FL + + P+KL+T
Sbjct: 546 MLDEGRISEVTANILMQSVDEALDQVSTTLCDWRGLKPHVNFPNYYNFLHSKVVPRKLVT 605

Query: 608 YFTVERLEFACSICAAFLRAHKIARQQLHDFIGDSGIASVVIEESKVEGEDARKFLEDVR 667
           YF VERLE AC I AAFLRAH IARQQL+DF+G+S I S+VI ES+ EGE+A+KFLE VR
Sbjct: 606 YFAVERLESACYISAAFLRAHTIARQQLYDFLGESNIGSIVINESEKEGEEAKKFLEKVR 665

Query: 668 VNFPQVLHVVKTRQVTYSVLNHLIDYIQNLEKVGLLEEKEMLHLHDAVQW-TSKSIRNKH 726
            +FPQVL VVKT+QVTYSVLNHL+ YI+NLEKVGLLEEKE+ HLHDAVQ    K +RN  
Sbjct: 666 SSFPQVLRVVKTKQVTYSVLNHLLGYIENLEKVGLLEEKEIAHLHDAVQTGLKKLLRNP- 724

Query: 727 SLHPVFTHGSNLGLYEVLIGKPYMSDMVT 755
              P+             +  P +SDM+T
Sbjct: 725 ---PI-------------VKLPKLSDMIT 737

Acts in electroneutral exchange of protons for cations such as Na(+) or Li(+) across plasma membrane. Involved in Na(+) and K(+) homeostasis. Required for cytoplasmic Na(+) and Li(+) detoxification by secreting them from the cytoplasm to the extracellular space. Regulates Na(+) content of the xylem sap.
Arabidopsis thaliana (taxid: 3702)

>sp\|Q3YL57\|NHX8_ARATH Sodium/hydrogen exchanger 8 OS=Arabidopsis thaliana GN=NHX8 PE=2 SV=1	Back alignment and function description

>sp\|Q6UJY2\|SL9C1_MOUSE Sodium/hydrogen exchanger 10 OS=Mus musculus GN=Slc9c1 PE=1 SV=3	Back alignment and function description

>sp\|P26434\|SL9A4_RAT Sodium/hydrogen exchanger 4 OS=Rattus norvegicus GN=Slc9a4 PE=1 SV=1	Back alignment and function description

>sp\|Q8BUE1\|SL9A4_MOUSE Sodium/hydrogen exchanger 4 OS=Mus musculus GN=Slc9a4 PE=2 SV=1	Back alignment and function description

>sp\|Q6AI14\|SL9A4_HUMAN Sodium/hydrogen exchanger 4 OS=Homo sapiens GN=SLC9A4 PE=1 SV=2	Back alignment and function description

>sp\|Q4G0N8\|SL9C1_HUMAN Sodium/hydrogen exchanger 10 OS=Homo sapiens GN=SLC9C1 PE=2 SV=2	Back alignment and function description

>sp\|Q01345\|NHEB_ONCMY Na(+)/H(+) exchanger beta OS=Oncorhynchus mykiss PE=2 SV=1	Back alignment and function description

>sp\|Q61165\|SL9A1_MOUSE Sodium/hydrogen exchanger 1 OS=Mus musculus GN=Slc9a1 PE=1 SV=1	Back alignment and function description

>sp\|P48763\|SL9A2_RAT Sodium/hydrogen exchanger 2 OS=Rattus norvegicus GN=Slc9a2 PE=1 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1079
225424514		1141	PREDICTED: sodium/hydrogen exchanger 7 [	0.986	0.932	0.690	0.0
449464876		1144	PREDICTED: sodium/hydrogen exchanger 7-l	0.985	0.929	0.661	0.0
269986105		1153	plasma membrane Na+/H+ antiporter [Zygop	0.975	0.913	0.639	0.0
421919829		1155	salt overly sensitive 1 [Sesuvium portul	0.986	0.921	0.630	0.0
224830812		1161	salt overly sensitive 1B [Chenopodium qu	0.963	0.895	0.633	0.0
154269388		1158	salt overly sensitive 1 [Chenopodium qui	0.964	0.898	0.629	0.0
124301347		1151	salt-overly-sensitive 1 [Mesembryanthemu	0.957	0.897	0.639	0.0
192764529		1151	Na+/H+ antiporter protein [Limonium gmel	0.987	0.925	0.616	0.0
119359748		1129	Na+/H+ antiporter [Phragmites australis]	0.964	0.922	0.609	0.0
119359750		1129	Na+/H+ antiporter [Phragmites australis]	0.964	0.922	0.608	0.0

>gi\|225424514\|ref\|XP_002285248.1\| PREDICTED: sodium/hydrogen exchanger 7 [Vitis vinifera] gi\|297737560\|emb\|CBI26761.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

 Score = 1527 bits (3954), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 795/1152 (69%), Positives = 914/1152 (79%), Gaps = 88/1152 (7%)

Query: 1    MESVSEGLLQLPYRTLEEEQKSGGGSSPSEGNPTDAVIFVGISLVLGIACRHLLRGTRVP 60
            M SV EG+   PYR L EE  S      S  NPTDAVIFVGI LV+GIACR LLRGTRVP
Sbjct: 1    MGSVLEGVF--PYRALGEESSS------SSSNPTDAVIFVGICLVMGIACRQLLRGTRVP 52

Query: 61   YTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLAVFLPALLFESSFAMEVH 120
            YTVALLI+GIALGSLE+GTS++LGKIGDGIRLWA+IDP+LLLAVFLPALLFESSF+MEVH
Sbjct: 53   YTVALLILGIALGSLEHGTSNKLGKIGDGIRLWANIDPNLLLAVFLPALLFESSFSMEVH 112

Query: 121  QIKRCLVQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLGGLLSATDPVAVVALL 180
            QIKRC+VQM++LAGPGV++STF LG+ALK TFPYDWSWKTSLLLGGLLSATDPVAVVALL
Sbjct: 113  QIKRCMVQMLILAGPGVLVSTFCLGSALKFTFPYDWSWKTSLLLGGLLSATDPVAVVALL 172

Query: 181  KELGASKKLNTIIEGESLMNDGTAIVVYQLFFQMVLGKSFGWGAIIKFLAQVSLGAVGMG 240
            KELGA KKL+TIIEGESLMNDGTAIVVYQLF+QMVLGKSF +GA++KFL QVSLGAVG+G
Sbjct: 173  KELGAGKKLSTIIEGESLMNDGTAIVVYQLFYQMVLGKSFNFGAVVKFLTQVSLGAVGIG 232

Query: 241  LAFGIASVLWLGFIFNDTVIEIALTLAVSYIAFFTAQEGADVSGVLTVMTLGMFYAAVAR 300
            LAFG+ASVLWLGFIFNDTVIEI LTLAVSYIA+FTAQEGADVSGVL VMTLGMFYAAVA+
Sbjct: 233  LAFGLASVLWLGFIFNDTVIEITLTLAVSYIAYFTAQEGADVSGVLAVMTLGMFYAAVAK 292

Query: 301  TAFKGESQQSLHYFWEMVAYIANTLIFILSGVVIAEGILGNDKIFQNHGNSWGYLILLYI 360
            TAFKG+ QQSLH+FWEMVAYIANTLIFILSGVVIAEG+LG++ IF+NHGNSWGYLILLY+
Sbjct: 293  TAFKGDGQQSLHHFWEMVAYIANTLIFILSGVVIAEGVLGSNDIFKNHGNSWGYLILLYV 352

Query: 361  FVQVSRLFVVGTLYPVLRNFGYGLEWKEAIILVWSGLRGAVALSLSLSVKRSSGGSSLIT 420
            +VQVSR+ VVG  YP L  FGYGL+WKEAIIL+WSGLRGAVALSLSLSVKR+S  SS ++
Sbjct: 353  YVQVSRIVVVGVSYPFLWYFGYGLDWKEAIILIWSGLRGAVALSLSLSVKRASDSSSYLS 412

Query: 421  SETGTLFVFFTGGIVFLTLIVNGSTTQYILHLLDMDKLSATKRRILDYTKYEMLNTAFKT 480
            SETGTLFVFFTGGIVFLTLIVNGSTTQ+ILHLL+MDKLS  KRRILDYTKYEMLN A + 
Sbjct: 413  SETGTLFVFFTGGIVFLTLIVNGSTTQFILHLLNMDKLSEVKRRILDYTKYEMLNKALEA 472

Query: 481  FGDLGDDEELGPVDWPTVKRYIRCLNDLEGVPMHPHSASETGDSLDPTNLRDIRIRLLNG 540
            FGDLGDDEELGP DWPTVKRYI  LND+EG  +HPH+  E+ ++L PTNL+DIRIRLLNG
Sbjct: 473  FGDLGDDEELGPADWPTVKRYIASLNDVEGGLVHPHTVYESDNNLYPTNLKDIRIRLLNG 532

Query: 541  VQAAYWAMLDEGRITQTAANILMQSVDEGIDLASNE-LCDWRGLKDNVSFPNYYKFLQTS 599
            VQAAYW MLDEGRITQT AN+LMQSVDE +DL S+E LCDW+GLK NV+FPNYY+FLQTS
Sbjct: 533  VQAAYWRMLDEGRITQTTANLLMQSVDEALDLVSDEPLCDWKGLKANVNFPNYYRFLQTS 592

Query: 600  MFPQKLITYFTVERLEFACSICAAFLRAHKIARQQLHDFIGDSGIASVVIEESKVEGEDA 659
            + PQKLITYFTVERLE AC ICAAFLRAH+IAR+QL DFIGDS IAS VI ES+ EGE+A
Sbjct: 593  ICPQKLITYFTVERLESACYICAAFLRAHRIARRQLLDFIGDSEIASTVINESEAEGEEA 652

Query: 660  RKFLEDVRVNFP---------QVLHVVKTRQVTY------------SVLNHLIDYIQ-NL 697
            RKFLEDVRV FP         QV H V    + Y              + HL D +Q +L
Sbjct: 653  RKFLEDVRVTFPQVLRVVKTRQVTHSVLLHLIDYVQNLEKIGLLEEKEMFHLHDAVQTDL 712

Query: 698  EK-------VGLLEEKEMLHLHD------------------------------------- 713
            +K       V +   ++M+  H                                      
Sbjct: 713  KKLLRNPPLVKIPRMRDMITTHPLLGALPSAVREPLESSTKEIMKVRGVALYREGSKPSG 772

Query: 714  -------AVQWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGKPYMSDMVTDSVVLCFFIES 766
                    V+W SKSIRNKHSL P FTHGS LGLYEVLIGKPY+ DM+TDSVVLCFF+E+
Sbjct: 773  IWLISSGVVKWASKSIRNKHSLRPTFTHGSTLGLYEVLIGKPYICDMITDSVVLCFFVET 832

Query: 767  DKILSILRSDPAVEDFLWQQSAIALSRILLPQIFEKLTMQDMRALIAERSKMTTCLRGEI 826
            DKI+S+LRSDPAVEDFLWQ+SAI L+++LLPQIFEK+ MQD+RAL+AE+S MT  + GE 
Sbjct: 833  DKIMSMLRSDPAVEDFLWQESAIVLAKLLLPQIFEKMAMQDLRALVAEKSIMTIYISGET 892

Query: 827  IEIPYHCIGFLLEGFIKTHGLQEELITPPAALIPSQGNLSFRSAETSGVEAVSFSHQGSC 886
            IEIP++ IGFLL+GFIK    QEELIT PAAL+PS  NLSFRS +TSG +    SHQGS 
Sbjct: 893  IEIPHYSIGFLLDGFIKG---QEELITYPAALMPSH-NLSFRSLDTSGAKVAGSSHQGSP 948

Query: 887  YLVETRARVIIFDIAAFEADKAVVRRTSSLFSHSSDQPHKSLSREHGNLMSWPEHFYKAR 946
            Y V+TRARVIIFDI+AFEAD+ + RR+SSL  HS+DQP +SLSREHG+LMSWPEHFYK R
Sbjct: 949  YQVQTRARVIIFDISAFEADRGLQRRSSSLVPHSADQPSRSLSREHGDLMSWPEHFYKLR 1008

Query: 947  QQKQNSEETDRKANSLSARAMQLSIFGNMVDVQRRSRSFATGTQTMQSHSLSFPSIPSHL 1006
            Q  Q++E    K+NSLS +AMQLSIFG+MV   +  RSF + ++   SHSLS+P +P+  
Sbjct: 1009 QDNQSTEGDRWKSNSLSYKAMQLSIFGSMVGTHQHIRSFQS-SRVKPSHSLSYPRVPTTH 1067

Query: 1007 NRRLVSVRSEGATTVREKLEVSRSTGQIPAPPSQNAG-ANESHVIDYSSDDSGAEDELIV 1065
               LVSVRSEG  T R  +++ + TGQ   PP Q      E+H +D SS++SG EDEL+V
Sbjct: 1068 APPLVSVRSEGPATARRGIDMGKLTGQNLKPPLQGTPHTKETHEVDDSSEESGVEDELLV 1127

Query: 1066 RIDSPSLLSFPQ 1077
            RIDSPS LSF Q
Sbjct: 1128 RIDSPSKLSFHQ 1139

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|449464876\|ref\|XP_004150155.1\| PREDICTED: sodium/hydrogen exchanger 7-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|269986105\|gb\|ACZ57357.1\| plasma membrane Na+/H+ antiporter [Zygophyllum xanthoxylum]	Back alignment and taxonomy information

>gi\|421919829\|gb\|AFX68848.1\| salt overly sensitive 1 [Sesuvium portulacastrum]	Back alignment and taxonomy information

>gi\|224830812\|gb\|ACN66494.1\| salt overly sensitive 1B [Chenopodium quinoa]	Back alignment and taxonomy information

>gi\|154269388\|gb\|ABS72166.1\| salt overly sensitive 1 [Chenopodium quinoa]	Back alignment and taxonomy information

>gi\|124301347\|gb\|ABN04858.1\| salt-overly-sensitive 1 [Mesembryanthemum crystallinum] gi\|150247013\|emb\|CAN99591.1\| salt-overly-sensitive 1 [Mesembryanthemum crystallinum]	Back alignment and taxonomy information

>gi\|192764529\|gb\|ACF05808.1\| Na+/H+ antiporter protein [Limonium gmelinii]	Back alignment and taxonomy information

>gi\|119359748\|dbj\|BAF41924.1\| Na+/H+ antiporter [Phragmites australis]	Back alignment and taxonomy information

>gi\|119359750\|dbj\|BAF41925.1\| Na+/H+ antiporter [Phragmites australis]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1079
TAIR\|locus:2041100		1146	SOS1 "SALT OVERLY SENSITIVE 1"	0.639	0.602	0.671	0.0
TAIR\|locus:2006762		756	NHX8 "Na+/H+ exchanger 8" [Ara	0.662	0.945	0.620	1.2e-234
TIGR_CMR\|CPS_3408		399	CPS_3408 "Na+/H+ antiporter Nh	0.315	0.852	0.284	1.2e-24
UNIPROTKB\|F1PLH9		723	SLC9C1 "Uncharacterized protei	0.401	0.598	0.243	1.9e-23
UNIPROTKB\|F1PLJ2		1086	SLC9C1 "Uncharacterized protei	0.401	0.398	0.243	2.3e-22
UNIPROTKB\|F1M7D9		1177	Slc9a10 "Protein Slc9a10" [Rat	0.402	0.368	0.235	2.4e-22
UNIPROTKB\|F1MQF9		1137	SLC9A10 "Uncharacterized prote	0.534	0.507	0.204	1.9e-21
MGI\|MGI:2685456		1175	Slc9c1 "solute carrier family	0.402	0.369	0.232	9.5e-21
GENEDB_PFALCIPARUM\|PF13_0019		1920	PF13_0019 "sodium/hydrogen exc	0.311	0.175	0.238	1.6e-20
UNIPROTKB\|Q8IET0		1920	PF13_0019 "Sodium/hydrogen exc	0.311	0.175	0.238	1.6e-20

TAIR\|locus:2041100 SOS1 "SALT OVERLY SENSITIVE 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 2359 (835.5 bits), Expect = 0., Sum P(2) = 0.
 Identities = 467/695 (67%), Positives = 541/695 (77%)

Query:    32 NPTDAVIFVGISLVLGIACRHLLRGTRVPYTVXXXXXXXXXXSLEYGTSHQLGKIGDGIR 91
             +P DAV+FVG+SLVLGIA RHLLRGTRVPYTV          SLEYG  H LGKIG GIR
Sbjct:    32 SPVDAVLFVGMSLVLGIASRHLLRGTRVPYTVALLVIGIALGSLEYGAKHNLGKIGHGIR 91

Query:    92 LWASIXXXXXXXXXXXXXXXESSFAMEVHQIKRCLVQMILLAGPGVMISTFFLGAALKLT 151
             +W  I               ESSF+MEVHQIKRCL QM+LLA PGV+IST  LG+ +K+T
Sbjct:    92 IWNEIDPELLLAVFLPALLFESSFSMEVHQIKRCLGQMVLLAVPGVLISTACLGSLVKVT 151

Query:   152 FPYDWSWKTXXXXXXXXXATDPVAVVALLKELGASKKLNTIIEGESLMNDGTAIVVYQLF 211
             FPY+W WKT         ATDPVAVVALLKELGASKKL+TIIEGESLMNDGTAIVV+QLF
Sbjct:   152 FPYEWDWKTSLLLGGLLSATDPVAVVALLKELGASKKLSTIIEGESLMNDGTAIVVFQLF 211

Query:   212 FQMVLGKSFGWGAIIKFLAQVSLGAVGMGLAFGIASVLWLGFIFNDTVIEIALTLAVSYI 271
              +M +G++  W +IIKFL +V+LGAVG+GLAFGIASV+WL FIFNDTVIEI LT+AVSY 
Sbjct:   212 LKMAMGQNSDWSSIIKFLLKVALGAVGIGLAFGIASVIWLKFIFNDTVIEITLTIAVSYF 271

Query:   272 AFFTAQEGADVSGVLTVMTLGMFYAAVARTAFKGESQQSLHYFWEMVAYIANTLIFILSG 331
             A++TAQE A  SGVLTVMTLGMFYAA ARTAFKG+SQ+SLH+FWEMVAYIANTLIFILSG
Sbjct:   272 AYYTAQEWAGASGVLTVMTLGMFYAAFARTAFKGDSQKSLHHFWEMVAYIANTLIFILSG 331

Query:   332 VVIAEGILGNDKIFQNHGNSWGYLILLYIFVQVSRLFVVGTLYPVLRNFGYGLEWKEAII 391
             VVIAEGIL +DKI    GNSW +L LLY+++Q+SR+ VVG LYP+L  FGYGL+WKE+II
Sbjct:   332 VVIAEGILDSDKIAYQ-GNSWRFLFLLYVYIQLSRVVVVGVLYPLLCRFGYGLDWKESII 390

Query:   392 LVWXXXXXXXXXXXXXXXXXXXXXXXXITSETGTLFVFFTGGIVFLTLIVNGSTTQYILH 451
             LVW                        I+ ETGTLF+FFTGGIVFLTLIVNGSTTQ++L 
Sbjct:   391 LVWSGLRGAVALALSLSVKQSSGNSH-ISKETGTLFLFFTGGIVFLTLIVNGSTTQFVLR 449

Query:   452 LLDMDKLSATKRRILDYTKYEMLNTAFKTFGDLGDDEELGPVDWPTVKRYIRCLNDLEG- 510
             LL MD L A K+RIL+YTKYEMLN A + F DLGDDEELGP DWPTV+ YI  L   EG 
Sbjct:   450 LLRMDILPAPKKRILEYTKYEMLNKALRAFQDLGDDEELGPADWPTVESYISSLKGSEGE 509

Query:   511 VPMHPHSASETGDSLDPTNLRDIRIRLLNGVQAAYWAMLDEGRITQTAANILMQSVDEGI 570
             +  HPH+ S+ G SLDP +L+DIR+R LNGVQA YW MLDEGRI++  ANILMQSVDE +
Sbjct:   510 LVHHPHNGSKIG-SLDPKSLKDIRMRFLNGVQATYWEMLDEGRISEVTANILMQSVDEAL 568

Query:   571 DLASNELCDWRGLKDNVSFPNYYKFLQTSMFPQKLITYFTVERLEFACSICAAFLRAHKI 630
             D  S  LCDWRGLK +V+FPNYY FL + + P+KL+TYF VERLE AC I AAFLRAH I
Sbjct:   569 DQVSTTLCDWRGLKPHVNFPNYYNFLHSKVVPRKLVTYFAVERLESACYISAAFLRAHTI 628

Query:   631 ARQQLHDFIGDSGIASVVIEESKVEGEDARKFLEDVRVNFPQVLHVVKTRQVTYSVLNHL 690
             ARQQL+DF+G+S I S+VI ES+ EGE+A+KFLE VR +FPQVL VVKT+QVTYSVLNHL
Sbjct:   629 ARQQLYDFLGESNIGSIVINESEKEGEEAKKFLEKVRSSFPQVLRVVKTKQVTYSVLNHL 688

Query:   691 IDYIQNLEKVGLLEEKEMLHLHDAVQW-TSKSIRN 724
             + YI+NLEKVGLLEEKE+ HLHDAVQ    K +RN
Sbjct:   689 LGYIENLEKVGLLEEKEIAHLHDAVQTGLKKLLRN 723

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006812 "cation transport" evidence=IEA

GO:0006814 "sodium ion transport" evidence=ISS;RCA;IMP

GO:0015299 "solute:hydrogen antiporter activity" evidence=IEA

GO:0015385 "sodium:hydrogen antiporter activity" evidence=ISS

GO:0035725 "sodium ion transmembrane transport" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009651 "response to salt stress" evidence=IEP;IMP

GO:0010163 "high-affinity potassium ion import" evidence=IMP

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0042542 "response to hydrogen peroxide" evidence=IEP;IMP

GO:2000377 "regulation of reactive oxygen species metabolic process" evidence=IMP

GO:0000302 "response to reactive oxygen species" evidence=IEP

GO:0006979 "response to oxidative stress" evidence=IMP

GO:0006816 "calcium ion transport" evidence=RCA

GO:0006869 "lipid transport" evidence=RCA

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=RCA

GO:0010351 "lithium ion transport" evidence=RCA

GO:0016558 "protein import into peroxisome matrix" evidence=RCA

TAIR\|locus:2006762 NHX8 "Na+/H+ exchanger 8" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TIGR_CMR\|CPS_3408 CPS_3408 "Na+/H+ antiporter NhaP" [Colwellia psychrerythraea 34H (taxid:167879)]	Back alignment and assigned GO terms

UNIPROTKB\|F1PLH9 SLC9C1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|F1PLJ2 SLC9C1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|F1M7D9 Slc9a10 "Protein Slc9a10" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|F1MQF9 SLC9A10 "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

MGI\|MGI:2685456 Slc9c1 "solute carrier family 9, subfamily C (Na+-transporting carboxylic acid decarboxylase), member 1" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

GENEDB_PFALCIPARUM\|PF13_0019 PF13_0019 "sodium/hydrogen exchanger, Na+, H+ antiporter" [Plasmodium falciparum (taxid:5833)]	Back alignment and assigned GO terms

UNIPROTKB\|Q8IET0 PF13_0019 "Sodium/hydrogen exchanger, Na+, H+ antiporter" [Plasmodium falciparum 3D7 (taxid:36329)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LKW9	NHX7_ARATH	No assigned EC number	0.7116	0.6719	0.6326	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	SOS1	SubName- Full=Chromosome chr1 scaffold_5, whole genome shotgun sequence; (1140 aa)
		(Vitis vinifera)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		1079
COG0025		429	COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiport	2e-60
pfam00999		370	pfam00999, Na_H_Exchanger, Sodium/hydrogen exchang	1e-51
TIGR00840		559	TIGR00840, b_cpa1, sodium/hydrogen exchanger 3	3e-43
TIGR00831		525	TIGR00831, a_cpa1, Na+/H+ antiporter, bacterial fo	9e-39
COG3263		574	COG3263, COG3263, NhaP-type Na+/H+ and K+/H+ antip	3e-20
PRK05326		562	PRK05326, PRK05326, potassium/proton antiporter; R	1e-16
COG0475		397	COG0475, KefB, Kef-type K+ transport systems, memb	3e-09
TIGR00932		273	TIGR00932, 2a37, transporter, monovalent cation:pr	0.002

>gnl\|CDD\|223104 COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]	Back alignment and domain information

 Score =  212 bits (543), Expect = 2e-60
 Identities = 115/439 (26%), Positives = 201/439 (45%), Gaps = 33/439 (7%)

Query: 36  AVIFVGISLVLGIACRHLLRGTRVPYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWAS 95
            +  + + L+LG+    L     +P    LL++G+  G          G       L   
Sbjct: 7   LLFLLLLILLLGLLVSVLAGRLLLPEIPLLLLLGLLGGPP--------GLNLISPDLE-- 56

Query: 96  IDPDLLLAVFLPALLFESSFAMEVHQIKRCLVQMILLAGPGVMISTFFLGAALKLTFPYD 155
           +DP+L L +FL  LLF     +++ +++R    +++LA P V+I+   +G       P  
Sbjct: 57  LDPELFLVLFLAILLFAGGLELDLRELRRVWRSILVLALPLVLITALGIGLLAHWLLP-G 115

Query: 156 WSWKTSLLLGGLLSATDPVAVVALLKELGASKKLNTIIEGESLMNDGTAIVVYQLFFQMV 215
                + LLG +LS TDPVAV  + K +   K++ TI+EGESL+NDG  IV++++    +
Sbjct: 116 IPLAAAFLLGAILSPTDPVAVSPIFKRVRVPKRIRTILEGESLLNDGVGIVLFKVALAAL 175

Query: 216 LGKS-FGWGAIIKFLAQVSLGAVGMGLAFGIASVLWLGFI----FNDTVIEIALTLAVSY 270
           LG   F  G  +      +LG + +GL  G      L  +    +   ++E  LTL +++
Sbjct: 176 LGTGAFSLGWALLLFLIEALGGILLGLLLGYLLGRLLRRLDRRGWTSPLLETLLTLLLAF 235

Query: 271 IAFFTAQEGADVSGVLTVMTLGMFYAAVARTAFKGES-QQSLHYFWEMVAYIANTLIFIL 329
            A+  A+    VSG+L V+  G+      R      S +  L  FWE++ ++ N L+F+L
Sbjct: 236 AAYLLAEAL-GVSGILAVVVAGLVLGEAVRINLSPASARLRLSSFWEVLDFLLNGLLFVL 294

Query: 330 SGVVIAEGILGNDKIFQNHGNSWGYLILLYIFVQVSRLF-VVGTLYPVLRNFGYGLEWKE 388
            G  +   +L               L++  + V ++R   V  +L          L W+E
Sbjct: 295 LGAQLPLSLL--------LALGLLGLLVALVAVLLARPLWVFLSLKGSNLKLRDPLPWRE 346

Query: 389 AIILVWSGLRGAVALSLSLSVKRSSGGSSLITSETGTLFVFFTGGIVFLTLIVNGSTTQY 448
            + L W+G RG V+L+L+L +         +      L +F    ++  +L+V G T   
Sbjct: 347 RLFLSWAGPRGVVSLALALLIP------LELPGPARELILFIVFLVILFSLLVQGLTLPP 400

Query: 449 ILHLLDMDKLSATKRRILD 467
           +   L++ + SA  + IL 
Sbjct: 401 LAKKLEVSEESALAKEILG 419

Length = 429

>gnl\|CDD\|216235 pfam00999, Na_H_Exchanger, Sodium/hydrogen exchanger family	Back alignment and domain information

>gnl\|CDD\|233147 TIGR00840, b_cpa1, sodium/hydrogen exchanger 3	Back alignment and domain information

>gnl\|CDD\|129911 TIGR00831, a_cpa1, Na+/H+ antiporter, bacterial form	Back alignment and domain information

>gnl\|CDD\|225802 COG3263, COG3263, NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain [Inorganic ion transport and metabolism]	Back alignment and domain information

>gnl\|CDD\|235410 PRK05326, PRK05326, potassium/proton antiporter; Reviewed	Back alignment and domain information

>gnl\|CDD\|223551 COG0475, KefB, Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]	Back alignment and domain information

>gnl\|CDD\|233195 TIGR00932, 2a37, transporter, monovalent cation:proton antiporter-2 (CPA2) family	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		1079
TIGR00831		525	a_cpa1 Na+/H+ antiporter, bacterial form. This mod	100.0
TIGR00840		559	b_cpa1 sodium/hydrogen exchanger 3. This model is	100.0
KOG1965		575	consensus Sodium/hydrogen exchanger protein [Inorg	100.0
COG0025		429	NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorg	100.0
KOG1966		670	consensus Sodium/hydrogen exchanger protein [Inorg	100.0
PRK05326		562	potassium/proton antiporter; Reviewed	100.0
TIGR00844		810	c_cpa1 na(+)/h(+) antiporter. This model is specif	100.0
COG3263		574	NhaP-type Na+/H+ and K+/H+ antiporters with a uniq	100.0
PF00999		380	Na_H_Exchanger: Sodium/hydrogen exchanger family;	99.98
PRK03562		621	glutathione-regulated potassium-efflux system prot	99.97
PRK03659		601	glutathione-regulated potassium-efflux system prot	99.97
PLN03159		832	cation/H(+) antiporter 15; Provisional	99.97
PRK10669		558	putative cation:proton antiport protein; Provision	99.96
TIGR00932		273	2a37 transporter, monovalent cation:proton antipor	99.96
COG0475		397	KefB Kef-type K+ transport systems, membrane compo	99.95
KOG4505		467	consensus Na+/H+ antiporter [Inorganic ion transpo	99.94
COG4651		408	RosB Kef-type K+ transport system, predicted NAD-b	99.81
KOG1650		769	consensus Predicted K+/H+-antiporter [Inorganic io	99.78
PRK14853		423	nhaA pH-dependent sodium/proton antiporter; Provis	99.09
TIGR00773		373	NhaA Na+/H+ antiporter NhaA. These proteins are me	98.46
PRK14856		438	nhaA pH-dependent sodium/proton antiporter; Provis	97.81
COG0786		404	GltS Na+/glutamate symporter [Amino acid transport	97.76
PRK09560		389	nhaA pH-dependent sodium/proton antiporter; Review	97.72
PRK14855		423	nhaA pH-dependent sodium/proton antiporter; Provis	97.64
PRK14854		383	nhaA pH-dependent sodium/proton antiporter; Provis	97.62
PRK09561		388	nhaA pH-dependent sodium/proton antiporter; Review	97.49
PF03616		368	Glt_symporter: Sodium/glutamate symporter; InterPr	97.4
PF06965		378	Na_H_antiport_1: Na+/H+ antiporter 1; InterPro: IP	97.37
COG3004		390	NhaA Na+/H+ antiporter [Inorganic ion transport an	97.24
PF03601		305	Cons_hypoth698: Conserved hypothetical protein 698	97.06
PRK03562		621	glutathione-regulated potassium-efflux system prot	96.53
PRK03659		601	glutathione-regulated potassium-efflux system prot	96.49
TIGR00698		335	conserved hypothetical integral membrane protein.	96.29
TIGR00210		398	gltS sodium--glutamate symport carrier (gltS).	95.68
PLN03159		832	cation/H(+) antiporter 15; Provisional	95.47
PRK10669		558	putative cation:proton antiport protein; Provision	95.41
COG0475		397	KefB Kef-type K+ transport systems, membrane compo	94.26
PF05684		378	DUF819: Protein of unknown function (DUF819); Inte	94.11
PF13593		313	DUF4137: SBF-like CPA transporter family (DUF4137)	93.7
PF01758		187	SBF: Sodium Bile acid symporter family; InterPro:	93.12
TIGR03802		562	Asp_Ala_antiprt aspartate-alanine antiporter. All	93.03
COG0679		311	Predicted permeases [General function prediction o	92.78
TIGR00832		328	acr3 arsenical-resistance protein. The first prote	92.21
COG2855		334	Predicted membrane protein [Function unknown]	91.71
COG0385		319	Predicted Na+-dependent transporter [General funct	90.72
PF06826		169	Asp-Al_Ex: Predicted Permease Membrane Region; Int	90.7
cd00038		115	CAP_ED effector domain of the CAP family of transc	89.94
TIGR03082		156	Gneg_AbrB_dup membrane protein AbrB duplication. T	89.91
PRK03818		552	putative transporter; Validated	89.61
PRK04972		558	putative transporter; Provisional	88.95
PRK12460		312	2-keto-3-deoxygluconate permease; Provisional	88.61
COG0798		342	ACR3 Arsenite efflux pump ACR3 and related permeas	88.58
PRK12460		312	2-keto-3-deoxygluconate permease; Provisional	88.44
TIGR00841		286	bass bile acid transporter. Functionally character	88.08
PF03601		305	Cons_hypoth698: Conserved hypothetical protein 698	88.02
PF03956		191	DUF340: Membrane protein of unknown function (DUF3	86.67
PF00027		91	cNMP_binding: Cyclic nucleotide-binding domain; In	86.28
PF03812		314	KdgT: 2-keto-3-deoxygluconate permease; InterPro:	86.25
TIGR00210		398	gltS sodium--glutamate symport carrier (gltS).	84.34
TIGR00946		321	2a69 he Auxin Efflux Carrier (AEC) Family.	84.27
PRK05326		562	potassium/proton antiporter; Reviewed	83.37
COG2431		297	Predicted membrane protein [Function unknown]	83.08
TIGR00698		335	conserved hypothetical integral membrane protein.	82.19
COG2855		334	Predicted membrane protein [Function unknown]	82.14
TIGR00844		810	c_cpa1 na(+)/h(+) antiporter. This model is specif	81.92
PF03390		414	2HCT: 2-hydroxycarboxylate transporter family; Int	80.25
PF03390		414	2HCT: 2-hydroxycarboxylate transporter family; Int	80.11

>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form	Back alignment and domain information

Probab=100.00  E-value=9.4e-61  Score=572.82  Aligned_cols=502  Identities=24%  Similarity=0.358  Sum_probs=390.6

Q ss_pred             HHHHHHHHHHHHcccCCcHHHHHHHHHHHhcccccccccccCcccccccccccCCHHHHHHHHHHHHHHHHhhcCChHHH
Q 001423           43 SLVLGIACRHLLRGTRVPYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLAVFLPALLFESSFAMEVHQI  122 (1079)
Q Consensus        43 lLllg~~~~~L~rrl~lP~~V~lil~GIlLGp~~~g~~~~Lg~l~~~i~~~~~i~pel~l~lfLp~LLF~aGl~ld~~~l  122 (1079)
                      +++.+.+...+++|+++|++++++++|+++|+...+ .            ..+++|++++.+++|+++|.+|+++|++.+
T Consensus         6 l~~~~~~~~~l~~r~~lP~~v~lil~Gi~lg~~~~~-~------------~~~~~~~~~~~~~Lp~lLF~~g~~~~~~~l   72 (525)
T TIGR00831         6 LVMLATAVAVTVKFIRLPYPIALILAGLLLGLAGLL-P------------EVPLDREIVLFLFLPPLLFEAAMNTDLREL   72 (525)
T ss_pred             HHHHHHHHHHHhcccCCCHHHHHHHHHHHHHhcccc-C------------CCCCCHHHHHHHHHHHHHHHHHhcCCHHHH
Confidence            334444556778999999999999999999986321 0            145789999999999999999999999999


Q ss_pred             HHhhhHHHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHhHhccccHHHHHHHHhhcCCCchHHHHHHHHHHHHHH
Q 001423          123 KRCLVQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLGGLLSATDPVAVVALLKELGASKKLNTIIEGESLMNDG  202 (1079)
Q Consensus       123 rr~~~~illLAv~gvlit~~lvg~~l~~l~p~~ls~~~ALLLGAIlSaTDPvaVvaILkelgl~~rL~~LIeGESLlNDa  202 (1079)
                      |+++++++.+|+++++++++++|+.++++ + ++||..|+++|+++|||||+++.+++++.++|+++.++++|||++||+
T Consensus        73 ~~~~~~i~~la~~~vlit~~~v~~~~~~~-~-~l~~~~alllGails~TDpvav~~il~~~~~p~rl~~il~gESllND~  150 (525)
T TIGR00831        73 RENFRPIALIAFLLVVVTTVVVGFSLNWI-L-GIPLALALILGAVLSPTDAVAVLGTFKSIRAPKKLSILLEGESLLNDG  150 (525)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h-cccHHHHHHHHHHhCCCCHHHHHHHHhcCCCCHHHHHHHhhhhhhcch
Confidence            99999999999999999999999999884 3 899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcc-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhhc
Q 001423          203 TAIVVYQLFFQMVLG-KSFGWGAIIKFLAQVSLGAVGMGLAFGIASVLWLGFIFNDTVIEIALTLAVSYIAFFTAQEGAD  281 (1079)
Q Consensus       203 ~AIVLf~l~l~~~~~-~~~s~~~i~~fl~~v~lGgiliGlv~G~l~~~~l~~~~~d~~~ei~ltLal~ylay~iAeE~lg  281 (1079)
                      +++++|.++..+..+ +.+++......+...++||+++|+++|++..+++++..+++..++.++++++|++|++| |.+|
T Consensus       151 ~alvlf~~~~~~~~~~~~~~~~~~~~~f~~~~~~gi~vG~~~g~~~~~l~~~~~~~~~~~~~l~l~~~~~~y~lA-e~lg  229 (525)
T TIGR00831       151 AALVVFAIAVAVALGKGVFDPLNAALDFAVVCVGGIAAGLAVGYLAYRLLRAKIDDPLVEIALTILAPFAGFLLA-ERFH  229 (525)
T ss_pred             HHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHH-HHhC
Confidence            999999999988764 55666554444445667888999999999887877766778889999999999999999 7899


Q ss_pred             ccchHHHHHHHHhhhhcccc-cccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccccccccc--chHH---HH
Q 001423          282 VSGVLTVMTLGMFYAAVART-AFKGESQQSLHYFWEMVAYIANTLIFILSGVVIAEGILGNDKIFQNHG--NSWG---YL  355 (1079)
Q Consensus       282 ~SGVLAvvvaGLvls~~~r~-~~~~~~~~~l~~fwe~ls~l~~~l~FillGl~I~~~vl~~~~~~~~~~--~~~~---~l  355 (1079)
                      .||++|+|++|++++++++. +.+++.+...++||+.+++++|+++|+++|+.++..............  ..+.   ..
T Consensus       230 ~SgilAvv~aGl~l~~~~~~~~~~~~~~~~~~~fw~~l~~ll~~~iFvllGl~l~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (525)
T TIGR00831       230 FSGVIAVVAAGLILTNYGRDFSMSPTTRLIALDFWSVIVFLVNGIIFILIGVQTPGTIFSAWKEILVAPAAVILALFTNA  309 (525)
T ss_pred             CCHHHHHHHHHHHHccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHH
Confidence            99999999999999987766 677788888999999999999999999999999753221100000000  0111   12


Q ss_pred             HHHHHHHHHHHHHHHHHH--HHHHhhhcCCCChHHHHHHHhhhhHHHHHHHHHHhhhccc-CCCcccccccccchHhhhh
Q 001423          356 ILLYIFVQVSRLFVVGTL--YPVLRNFGYGLEWKEAIILVWSGLRGAVALSLSLSVKRSS-GGSSLITSETGTLFVFFTG  432 (1079)
Q Consensus       356 lll~v~ilv~R~l~v~~l--~p~L~~~g~~ls~re~~vl~wgGlRGaVsLaLAl~v~~~~-~~~~~~~~~~~~l~vf~t~  432 (1079)
                      ++++..+.+.|+++++..  .++.++.+.+++||++++++|+|+||++++++|+++|... ++.+++   .++.++++++
T Consensus       310 ~~i~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~r~~~v~~w~G~RG~vslA~al~~p~~~~~g~~~p---~r~~i~~~~~  386 (525)
T TIGR00831       310 FVIYPVMTYVRFLWTMKPFSNRFLKKKPMEFGTRWKHVVSWAGLRGAIPLALALSFPNQLLSGMAFP---ARYELVFLAA  386 (525)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcccCCCChhhHHHheeccchHHHHHHHHHHccccccCCCCCc---hHHHHHHHHH
Confidence            334445566777665432  1222333456789999999999999999999999999652 333443   3578999999


Q ss_pred             hhhhHHHhhhhhhHHHHHHHccCCCccHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCChHHH-HHHHHHhhccCCC
Q 001423          433 GIVFLTLIVNGSTTQYILHLLDMDKLSATKRRILDYTKYEMLNTAFKTFGDLGDDEELGPVDWPTV-KRYIRCLNDLEGV  511 (1079)
Q Consensus       433 gVVllTLlV~G~tl~~Llr~Lgl~~~s~~k~~i~~~~~~~~~~~a~~~l~~l~~d~~l~~~~~~~v-~~y~~~l~~~e~~  511 (1079)
                      ++|++|+++||+|+|+++|++++++.++. +.....++..+.+.+.+.++++.+++..+++..+.+ ++|..++++.+.+
T Consensus       387 ~vVl~TllvqG~tlp~l~r~l~~~~~~~~-~~e~~~a~~~~~~aa~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  465 (525)
T TIGR00831       387 GVILFSLLVQGISLPIFVKRKFVSEHSER-ELEEIIARYIAARSAKFALMKAVEQLRIVEPVARELLPELDARIEELRAD  465 (525)
T ss_pred             HHHHHHHHHHHhhHHHHHHhcCCCCCChh-hHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHhh
Confidence            99999999999999999999999877643 333456677788888888888776654433323333 4565555443221


Q ss_pred             CCCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 001423          512 PMHPHSASETGDSLDPTNLRDIRIRLLNGVQAAYWAMLDEGRITQTAANILMQSVDE  568 (1079)
Q Consensus       512 ~~~~~~~~~~~~~~~~~~~~e~r~rll~~~r~~~~~l~~~g~Is~~~~~~Ll~~vd~  568 (1079)
                      .   .+..+ +...+.....++|++++++||+.+.+++++|+||+++++.+++++|.
T Consensus       466 ~---~~~~~-~~~~~~~~~~~~~~~~l~~er~~l~~~~~~~~i~~~~~~~~~~~ld~  518 (525)
T TIGR00831       466 G---EEKIR-SGMGEKNLRRRARLYVLDAKRSAVVDLRAGGLISQEVLLELMRELDL  518 (525)
T ss_pred             c---ccchh-hhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhhH
Confidence            1   00000 00011112346888899999999999999999999999999888765

This model is specific for the bacterial members of this family.

>TIGR00840 b_cpa1 sodium/hydrogen exchanger 3	Back alignment and domain information

>KOG1965 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]	Back alignment and domain information

>COG0025 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]	Back alignment and domain information

>KOG1966 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]	Back alignment and domain information

>PRK05326 potassium/proton antiporter; Reviewed	Back alignment and domain information

>TIGR00844 c_cpa1 na(+)/h(+) antiporter	Back alignment and domain information

>COG3263 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain [Inorganic ion transport and metabolism]	Back alignment and domain information

>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ]	Back alignment and domain information

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional	Back alignment and domain information

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional	Back alignment and domain information

>PLN03159 cation/H(+) antiporter 15; Provisional	Back alignment and domain information

>PRK10669 putative cation:proton antiport protein; Provisional	Back alignment and domain information

>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family	Back alignment and domain information

>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]	Back alignment and domain information

>KOG4505 consensus Na+/H+ antiporter [Inorganic ion transport and metabolism]	Back alignment and domain information

>COG4651 RosB Kef-type K+ transport system, predicted NAD-binding component [Inorganic ion transport and metabolism]	Back alignment and domain information

>KOG1650 consensus Predicted K+/H+-antiporter [Inorganic ion transport and metabolism]	Back alignment and domain information

>PRK14853 nhaA pH-dependent sodium/proton antiporter; Provisional	Back alignment and domain information

>TIGR00773 NhaA Na+/H+ antiporter NhaA	Back alignment and domain information

>PRK14856 nhaA pH-dependent sodium/proton antiporter; Provisional	Back alignment and domain information

>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism]	Back alignment and domain information

>PRK09560 nhaA pH-dependent sodium/proton antiporter; Reviewed	Back alignment and domain information

>PRK14855 nhaA pH-dependent sodium/proton antiporter; Provisional	Back alignment and domain information

>PRK14854 nhaA pH-dependent sodium/proton antiporter; Provisional	Back alignment and domain information

>PRK09561 nhaA pH-dependent sodium/proton antiporter; Reviewed	Back alignment and domain information

>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate	Back alignment and domain information

>PF06965 Na_H_antiport_1: Na+/H+ antiporter 1; InterPro: IPR004670 NhaA is a sodium ion/proton antiporter that uses the proton electrochemical gradient to expel sodium ions from the cytoplasm and functions primarily in the adaptation to high salinity at alkaline pH	Back alignment and domain information

>COG3004 NhaA Na+/H+ antiporter [Inorganic ion transport and metabolism]	Back alignment and domain information

>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins	Back alignment and domain information

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional	Back alignment and domain information

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional	Back alignment and domain information

>TIGR00698 conserved hypothetical integral membrane protein	Back alignment and domain information

>TIGR00210 gltS sodium--glutamate symport carrier (gltS)	Back alignment and domain information

>PLN03159 cation/H(+) antiporter 15; Provisional	Back alignment and domain information

>PRK10669 putative cation:proton antiport protein; Provisional	Back alignment and domain information

>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]	Back alignment and domain information

>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species	Back alignment and domain information

>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)	Back alignment and domain information

>PF01758 SBF: Sodium Bile acid symporter family; InterPro: IPR002657 This family of proteins are found both in prokaryotes and eukaryotes	Back alignment and domain information

>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter	Back alignment and domain information

>COG0679 Predicted permeases [General function prediction only]	Back alignment and domain information

>TIGR00832 acr3 arsenical-resistance protein	Back alignment and domain information

>COG2855 Predicted membrane protein [Function unknown]	Back alignment and domain information

>COG0385 Predicted Na+-dependent transporter [General function prediction only]	Back alignment and domain information

>PF06826 Asp-Al_Ex: Predicted Permease Membrane Region; InterPro: IPR006512 These sequences contain a domain that is duplicated in HI0035 of Haemophilus influenzae, in YidE and YbjL of Escherichia coli, and in a number of other putative transporters	Back alignment and domain information

>cd00038 CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor	Back alignment and domain information

>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication	Back alignment and domain information

>PRK03818 putative transporter; Validated	Back alignment and domain information

>PRK04972 putative transporter; Provisional	Back alignment and domain information

>PRK12460 2-keto-3-deoxygluconate permease; Provisional	Back alignment and domain information

>COG0798 ACR3 Arsenite efflux pump ACR3 and related permeases [Inorganic ion transport and metabolism]	Back alignment and domain information

>PRK12460 2-keto-3-deoxygluconate permease; Provisional	Back alignment and domain information

>TIGR00841 bass bile acid transporter	Back alignment and domain information

>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins	Back alignment and domain information

>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments	Back alignment and domain information

>PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ]	Back alignment and domain information

>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi	Back alignment and domain information

>TIGR00210 gltS sodium--glutamate symport carrier (gltS)	Back alignment and domain information

>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family	Back alignment and domain information

>PRK05326 potassium/proton antiporter; Reviewed	Back alignment and domain information

>COG2431 Predicted membrane protein [Function unknown]	Back alignment and domain information

>TIGR00698 conserved hypothetical integral membrane protein	Back alignment and domain information

>COG2855 Predicted membrane protein [Function unknown]	Back alignment and domain information

>TIGR00844 c_cpa1 na(+)/h(+) antiporter	Back alignment and domain information

>PF03390 2HCT: 2-hydroxycarboxylate transporter family; InterPro: IPR004679 The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom	Back alignment and domain information

>PF03390 2HCT: 2-hydroxycarboxylate transporter family; InterPro: IPR004679 The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		1079
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-13
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-07

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 71.8 bits (175), Expect = 9e-13
 Identities = 84/651 (12%), Positives = 177/651 (27%), Gaps = 180/651 (27%)

Query: 304 KGESQQSLHYFWEMVAYIANTL-IFILSGVVIAEGILGNDKIF-----QNHGNSWGYLIL 357
           K     +L  FW +++     +  F+       E +L  +  F     +        +  
Sbjct: 58  KDAVSGTLRLFWTLLSKQEEMVQKFV-------EEVLRINYKFLMSPIKTEQRQPSMMTR 110

Query: 358 LYIFVQVSRLFVVGTLYP-----------VLRNFGYGLEWKEAIILVWSGLRGAVALSLS 406
           +YI  Q  RL+    ++             LR     L   + +++   G+ G+    ++
Sbjct: 111 MYIE-QRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLID--GVLGSGKTWVA 167

Query: 407 LSVKRSSGGSSLITSETGTLFVFFTGGIVFLTLIVNGSTT------QYILHLLDMDKLSA 460
           L V  S             +       I +L L    S        Q +L+ +D +  S 
Sbjct: 168 LDVCLSYK-----------VQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSR 216

Query: 461 TKRRILDYTKYEMLNTAFKTFGDLGDDEELGPVDWPTVKRYIRCLNDLEGVPMHPHSASE 520
           +        +   +    +    L              K Y  CL  L  V       ++
Sbjct: 217 SDHSSNIKLRIHSIQAELRRL--LKS------------KPYENCLLVLLNV-----QNAK 257

Query: 521 TGDSLDP-------TNLRDIRIRLLNGVQAAYWAMLDEGRITQT---AANILMQSVDEGI 570
             ++ +        T  R  ++             LD   +T T     ++L++ +D   
Sbjct: 258 AWNAFNLSCKILLTT--RFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRP 315

Query: 571 DLASNELCD---------WRGLKDNVSFPNYYKFLQTSMFPQKLITYFTVERLEFACSIC 621
                E+              ++D ++  + +K             +   ++L       
Sbjct: 316 QDLPREVLTTNPRRLSIIAESIRDGLATWDNWK-------------HVNCDKLTTIIESS 362

Query: 622 AAFLRAHKIARQQLHDFIGDSGIASVVIEESKVEGEDARKFLEDVRVNFP-QVLHVV--- 677
              L   +  R+               +            F     +  P  +L ++   
Sbjct: 363 LNVLEPAEY-RKMFDRL---------SV------------FPPSAHI--PTILLSLIWFD 398

Query: 678 KTRQVTYSVLNHLIDYIQNLEKVGLLEE--KEM-LHLHDAVQWTSKSIRNKHSLHPVFTH 734
             +     V+N L  Y        L+E+  KE  + +          + N+++LH     
Sbjct: 399 VIKSDVMVVVNKLHKY-------SLVEKQPKESTISIPSIYLELKVKLENEYALHRSI-- 449

Query: 735 GSNLGLYEVLIGKPY--MSDMVTDSVVLCFF------IESDKILSILRSDPAVEDFLWQQ 786
              +  Y +        +     D             IE  + +++ R      DF + +
Sbjct: 450 ---VDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRM--VFLDFRFLE 504

Query: 787 SAIALSRILLPQIFEKL-TMQDMRALIAERSKMTTCLRGEIIEIPYHCIGFLLEGFI-KT 844
             I             L T+Q ++                     Y       + +I   
Sbjct: 505 QKIRHDSTAWNASGSILNTLQQLKF--------------------Y-------KPYICDN 537

Query: 845 HGLQEELITPPAALIPSQGNLSFRSAETSGVEAVSFSHQGSCYLVETRARV 895
               E L+      +P        S  T  +  ++   +      E   +V
Sbjct: 538 DPKYERLVNAILDFLPKIEENLICSKYTDLLR-IALMAEDEAIFEEAHKQV 587

PyMOL of 1vt4

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		1079
d1q3ea_		193	HCN pacemaker channel {Mouse (Mus musculus) [TaxId	93.89
d1vp6a_		133	Putative ion channel CnbD {Mesorhizobium loti [Tax	91.9
d1cx4a1		136	Regulatory subunit of Protein kinase A {Rat (Rattu	85.15

>d1q3ea_ b.82.3.2 (A:) HCN pacemaker channel {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: HCN pacemaker channel
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.89  E-value=0.12  Score=24.87  Aligned_cols=57  Identities=14%  Similarity=0.190  Sum_probs=46.8

Q ss_pred             CCCCCCCCHHHHHCCCCCCCHHCCCCEEEEECCCHHHHHHHHHCCHHHHHHHHHHHH
Q ss_conf             555775412454218975111012214544310237899998219246888889999
Q 001423          732 FTHGSNLGLYEVLIGKPYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSA  788 (1079)
Q Consensus       732 f~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~e~~~~~~s~  788 (1079)
                      .+.|...|..+++.+.++-++++|.+.+.++.|+.+.++.+++.+|++...+.+.+.
T Consensus       132 l~~G~~fGe~~~~~~~~~~~~~~a~~~~~l~~l~~~~f~~ll~~~p~~~~~~~~~~~  188 (193)
T d1q3ea_         132 LSDGSYFGEICLLTRGRRTASVRADTYCRLYSLSVDNFNEVLEEYPMMRRAFETVAI  188 (193)
T ss_dssp             ECTTCEECHHHHHHCSBCSSEEEESSCEEEEEEEHHHHHHHHHHSGGGHHHHHHHHH
T ss_pred             ECCCEEEEEEECCCCCCCCCCCEECCCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHH
T ss_conf             506536554202477742124224574699997699999999879999999999999

PyMOL of d1q3ea_

>d1vp6a_ b.82.3.2 (A:) Putative ion channel CnbD {Mesorhizobium loti [TaxId: 381]}	Back information, alignment and structure

>d1cx4a1 b.82.3.2 (A:130-265) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]}	Back information, alignment and structure