Citrus Sinensis ID: 001429

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------108
MGNRGQKRMEMAVDLPDDKRACSSLDFRPSTSNSSVQTHLNSTNSTPETHHNDMDTSSSASASSRSEEEPEKDAGYGSCDSDDAEPRHRGLRELQRRRSSSDHGKLRSILACLSEDTDPSRHITSLTELCEVLSFAMEDSLSSMMADSLSPVLVKLARHETNPDIMLLAVRAITYLCDIFPRSSGLLVRHDAVPALCQRLKAIEYLDVAEQCLQALEKISRDQPHACLEGGAIMAALTYIDFFSTSIQRVALSTVANICKKLPSECPSHLMEAVPILSNLLQYEDRQLVESVAICLIKIAEQLSQSSQMLDEVCSHGLINQTTHLLNLNSRTTLSQPIYYGLIGLLVKISSGSILNIGSVLKDILSTYDLSHGMSSPHMVDGHCNQVHEVLKLLNELLPTSVGDQCVQLVLDKQSFLVDRPDLLQNFGMDILPMLIQVVNSGANIFVCYGCLSVINKLVYLSKSDMLIELLKSANIPSFLAGVFTRKDHHVLILALEIAEMILQKLSDTFLNSFVKEGVFFAIDALLTPEKCSQLFPAFSGIQLCPSSSQKCAGREVLRCLCYAFDTGLSSSASEKQSCKLDKDSVHNLAKSIITKYFSPELFGSDKGLTDILQDLRSFSAALTDLMNVCTDNEAHARDEEKFYCILHQIMEKLNGREPVSTFEFIESGIVKSLVTYLTNGLYLRDNAELHIPHSDLFVVEKRFEVLARLLLPYSDNLSEDSPVSVLIQKLQSALSSLENFPVILSHSFKLRSSYATVPYGRCIAHPCLRVRFVRGDGETCLSDFSEDLLTVDPFSSLEAIEGYLWPKVTIKESKDVESDCLMDQMNGQPLYLSSNSKSILGESSESMEHESTSAGLTPVKHDSISSTSGVPKMQDCKIKLTFDLDGQKLERTLTLYQAILQKQIKTDGEVIAGAKLWTQVYTIIYRRAMESKCNDPKNCVHLHPISDGDEARLHCASFFSSLFACQLAFELDKSSPIYDILFLLKSLEGVNRLTCHLISHERIRAYAEGRFDNLDDLKVEVHSLRQNDFVNSKLTEKLEQQMRDSAAVSTGGVPSWCNQLMASCPFLFSLKQGASIFS
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccHHHHccccccccccccccccccHHHHHHcccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccccHHHHcccccHHHHHHHccccccHHHHHHHHHHHHHHHccccHHHHHHHHcccHHHHHHHHcccccHHHHHHHHHHHHHHHcccccHHHHcccHHHHHHHcccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHcccHHHHHHHHcccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHcccccccccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccccHHHHHHHHHHcccHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHccccccccHHHHHHcHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHcccccccEEEcccccccccccccccccccccccEEEEEEccccccccccccccEEEEcccccHHHHHHHHcccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEcccccccccccHHHHHHHHHHccccccccccccccccEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHccccccccHHccccc
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccHHHHHHEccccHHHHHHHHHHcccHHHHHHHHHHHHHHHHccHHHHHHcccHHHHHHHHHHccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccHHHHHHHHcccHHHHHHHHHcccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHcccccccccEccccHHHHHHHHcHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccHHHHHHHHccccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHcccccccHHHHHccHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHcccEEEEEcccccccccccccccccccccEEEEEEEccccccHHHccccEEEEcHHHHHHHHHHHccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccEEEEEEcccEcccccEEHHHHHHccccccccccccccccccEEEEEEEEcccccccccccccccccccccccccccccccHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHcccEccHcccEEEcccccHHHHHHHHHHHHHHHHHcccEEEEcccccHHHHHHHHHccccccHHHHHHHcc
MGNRGQKRMEMAVdlpddkracssldfrpstsnssvqthlnstnstpethhndmdtsssasassrseeepekdagygscdsddaeprhRGLRELqrrrsssdhgkLRSILAClsedtdpsrhiTSLTELCEVLSFAMEDSLSSMMADSLSPVLVKLARHETNPDIMLLAVRAITYLCdifprssgllvrhdaVPALCQRLKAIEYLDVAEQCLQALEKIsrdqphacleGGAIMAALTYIDFFSTSIQRVALSTVANICkklpsecpshlMEAVPILSNLLQYEDRQLVESVAICLIKIAEQLSQSSQMLDEVCshglinqtthllnlnsrttlsqpiYYGLIGLLVKissgsilnIGSVLKDILSTydlshgmssphmvdghCNQVHEVLKLLNELlptsvgdqCVQLVLDKqsflvdrpdllqnfgmdiLPMLIQVVNSGANIFVCYGCLSVINKLVYLSKSDMLIELLKsanipsflagvftrkDHHVLILALEIAEMILQKLSDTFLNSFVKEGVFFAIDalltpekcsqlfpafsgiqlcpsssqkcagrEVLRCLCYAfdtglsssasekqsckldkDSVHNLAKSIITkyfspelfgsdkgLTDILQDLRSFSAALTDLMNVctdneahardEEKFYCILHQIMEklngrepvstfefIESGIVKSLVTYLTNglylrdnaelhiphsdlfVVEKRFEVLARLLlpysdnlsedspVSVLIQKLQSALSslenfpvilshsfklrssyatvpygrciahpclrvrfvrgdgetclsdfsedlltvdpfssleaiegylwpkvtikeskdvesdclmdqmngqplylssnsksilgessesmehestsagltpvkhdsisstsgvpkmqdckikltfdldgQKLERTLTLYQAILQKQIKTDGEVIAGAKLWTQVYTIIYRRAMeskcndpkncvhlhpisdgdearLHCASFFSSLFACQLAFeldksspiyDILFLLKSLEGVNRLTCHLISHERIRAYAEGRFDNLDDLKVEVHSLRQNDFVNSKLTEKLEQQMRDSaavstggvpswcnqlmascpflfslkqgasifs
MGNRGQKRMEMAVDLPDDKRACSSLDFrpstsnssvqthlnstnstpethhndmdtsssasassrseeepekdagygscdsddaeprHRGLrelqrrrsssdhgklRSILAclsedtdpsrhITSLTELCEVLSFAMEDSLSSMMADSLSPVLVKLARHETNPDIMLLAVRAITYLCDIFPRSSGLLVRHDAVPALCQRLKAIEYLDVAEQCLQALEKISRDQPHACLEGGAIMAALTYIDFFSTSIQRVALSTVANICKKLPSECPSHLMEAVPILSNLLQYEDRQLVESVAICLIKIAEQLSQSSQMLDEVCSHGLINQTTHLLNLNSRTTLSQPIYYGLIGLLVKISSGSILNIGSVLKDILSTYDLSHGMSSPHMVDGHCNQVHEVLKLLNELLPTSVGDQCVQLVLDKQSFLVDRPDLLQNFGMDILPMLIQVVNSGANIFVCYGCLSVINKLVYLSKSDMLIELLKSANIPSFLAGVFTRKDHHVLILALEIAEMILQKLSDTFLNSFVKEGVFFAIDALLTPEKCSQLFPAFSGIQLCPSSSQKCAGREVLRCLCYAFDTGlsssasekqsCKLDKDSVHNLAKSIITkyfspelfgSDKGLTDILQDLRSFSAALTDLMNVCTDNEAHARDEEKFYCILHQIMEKLNGREPVSTFEFIESGIVKSLVTYLTNGLYLRDNAELHIPHSDLFVVEKRFEVLARLLLPYSDNLSEDSPVSVLIQKLQSALSSLENFPVILSHSFKLRSSYATVPYGRCIAHPCLRVRFVRGDGETCLSDFSEDLLTVDPFSSLEAiegylwpkvTIKESKDVESDCLMDQMNGQPLYLSSNSKSILGESSESMEHEstsagltpvkhdsisstsgvpkmqdCKIKLTFDLDGQKLERTLTLYQAILQKQIktdgeviagaKLWTQVYTIIYRRAMESKCNDPKNCVHLHPISDGDEARLHCASFFSSLFACQLAFELDKSSPIYDILFLLKSLEGVNRLTCHLISHERIRAYAEGRFDNLDDLKVEVHSLRQNDFVNSKLTEKLEQQMRDSAAVSTGGVPSWCNQLMASCPFLFSLKQGASIFS
MGNRGQKRMEMAVDLPDDKRACSSLDFRPSTSNSSVQTHLNSTNSTPETHHNDMDTsssasassrseeePEKDAGYGSCDSDDAEPRHRGLRELQrrrsssDHGKLRSILACLSEDTDPSRHITSLTELCEVLSFamedslssmmadslsPVLVKLARHETNPDIMLLAVRAITYLCDIFPRSSGLLVRHDAVPALCQRLKAIEYLDVAEQCLQALEKISRDQPHACLEGGAIMAALTYIDFFSTSIQRVALSTVANICKKLPSECPSHLMEAVPILSNLLQYEDRQLVESVAICLIKIAEQLSQSSQMLDEVCSHGLINQTTHLLNLNSRTTLSQPIYYGLIGLLVKISSGSILNIGSVLKDILSTYDLSHGMSSPHMVDGHCNQVHEVLKLLNELLPTSVGDQCVQLVLDKQSFLVDRPDLLQNFGMDILPMLIQVVNSGANIFVCYGCLSVINKLVYLSKSDMLIELLKSANIPSFLAGVFTRKDHHVlilaleiaemilQKLSDTFLNSFVKEGVFFAIDALLTPEKCSQLFPAFSGIQLCPSSSQKCAGREVLRCLCYAFDTGLSSSASEKQSCKLDKDSVHNLAKSIITKYFSPELFGSDKGLTDILQDLRSFSAALTDLMNVCTDNEAHARDEEKFYCILHQIMEKLNGREPVSTFEFIESGIVKSLVTYLTNGLYLRDNAELHIPHSDLFVVEKRFEVLARLLLPYSDNLSEDSPVSVLIQKLQSALSSLENFPVILSHSFKLRSSYATVPYGRCIAHPCLRVRFVRGDGETCLSDFSEDLLTVDPFSSLEAIEGYLWPKVTIKESKDVESDCLMDQMNGQPLYLSSNSKSILGessesmehestsAGLTPVKHDSISSTSGVPKMQDCKIKLTFDLDGQKLERTLTLYQAILQKQIKTDGEVIAGAKLWTQVYTIIYRRAMESKCNDPKNCVHLHPISDGDEARLHCASFFSSLFACQLAFELDKSSPIYDILFLLKSLEGVNRLTCHLISHERIRAYAEGRFDNLDDLKVEVHSLRQNDFVNSKLTEKLEQQMRDSAAVSTGGVPSWCNQLMASCPFLFSLKQGASIFS
************************************************************************************************************ILACL********HITSLTELCEVLSFAMED*******DSLSPVLVKLARHETNPDIMLLAVRAITYLCDIFPRSSGLLVRHDAVPALCQRLKAIEYLDVAEQCLQALEKISRDQPHACLEGGAIMAALTYIDFFSTSIQRVALSTVANICKKLPSECPSHLMEAVPILSNLLQYEDRQLVESVAICLIKIAEQLSQSSQMLDEVCSHGLINQTTHLLNLNSRTTLSQPIYYGLIGLLVKISSGSILNIGSVLKDILSTYDLSHGMSSPHMVDGHCNQVHEVLKLLNELLPTSVGDQCVQLVLDKQSFLVDRPDLLQNFGMDILPMLIQVVNSGANIFVCYGCLSVINKLVYLSKSDMLIELLKSANIPSFLAGVFTRKDHHVLILALEIAEMILQKLSDTFLNSFVKEGVFFAIDALLTPEKCSQLFPAFSGIQLCPSSSQKCAGREVLRCLCYAFDTGL****************VHNLAKSIITKYFSPELFGSDKGLTDILQDLRSFSAALTDLMNVCTDNEAHARDEEKFYCILHQIMEKLNGREPVSTFEFIESGIVKSLVTYLTNGLYLRDNAELHIPHSDLFVVEKRFEVLARLLLPYSDNLSEDSPVSVLIQKLQSALSSLENFPVILSHSFKLRSSYATVPYGRCIAHPCLRVRFVRGDGETCLSDFSEDLLTVDPFSSLEAIEGYLWPKVTIKE**************************************************************DCKIKLTFDLDGQKLERTLTLYQAILQKQIKTDGEVIAGAKLWTQVYTIIYRRAMESKCNDPKNCVHLHPISDGDEARLHCASFFSSLFACQLAFELDKSSPIYDILFLLKSLEGVNRLTCHLISHERIRAYAEGRFDNLDDLKVEVHSLRQNDFV*******************TGGVPSWCNQLMASCPFLFSLK*******
********************************************************************************************************************TDPSRHITSLTELCEVLSFAMEDSLSSMMADSLSPVLVKLARHETNPDIMLLAVRAITYLCDIFPRSSGLLVRHDAVPALCQRLKAIEYLDVAEQCLQALEKISRDQPHACLEGGAIMAALTYIDFFSTSIQRVALSTVANICKKLPSECPSHLMEAVPILSNLLQYEDRQLVESVAICLIKIAEQLSQSSQMLDEVCSHGLINQTTHLLN*****TLSQPIYYGLIGLLVKISSGSILNIGSVLKDILSTYDLSHGMSSPHMVDGHCNQVHEVLKLLNELLPTSVGDQCVQLVLDKQSFLVDRPDLLQNFGMDILPMLIQVVNSGANIFVCYGCLSVINKLVYLSKSDMLIELLKSANIPSFLAGVFTRKDHHVLILALEIAEMILQKLSDTFLNSFVKEGVFFAIDALLTP**********************************************************NLAKSIITKYFSP************LQDLRSFSAALTD**************EEKFYCILHQIMEKLNGREPVSTFEFIESGIVKSLVTYLTNGLYLR********HSDLFVVEKRFEVL****************VSVLIQKLQSALSSLENFPV*****************************************FSEDLLTVDPFSSLEAIEGYLWPKV**********************************************************************KLTFDLDGQKLERTLTLYQAI****************LWTQVYTIIY********************************************ELDKSSPIYDILFLLKSLEGVNRLTCHLISHERIRAYAEGRFDNLDDLKVEVHSLRQNDFVNSKLTEKLEQQMRDSAAVSTGGVPSWCNQLMASCPFLFSLKQGASIFS
**********MAVDLPDDKRACSSLD*************************************************************HRGLRE************LRSILACLSEDTDPSRHITSLTELCEVLSFAMEDSLSSMMADSLSPVLVKLARHETNPDIMLLAVRAITYLCDIFPRSSGLLVRHDAVPALCQRLKAIEYLDVAEQCLQALEKISRDQPHACLEGGAIMAALTYIDFFSTSIQRVALSTVANICKKLPSECPSHLMEAVPILSNLLQYEDRQLVESVAICLIKIAEQLSQSSQMLDEVCSHGLINQTTHLLNLNSRTTLSQPIYYGLIGLLVKISSGSILNIGSVLKDILSTYDLSHGMSSPHMVDGHCNQVHEVLKLLNELLPTSVGDQCVQLVLDKQSFLVDRPDLLQNFGMDILPMLIQVVNSGANIFVCYGCLSVINKLVYLSKSDMLIELLKSANIPSFLAGVFTRKDHHVLILALEIAEMILQKLSDTFLNSFVKEGVFFAIDALLTPEKCSQLFPAFSGIQLCPSSSQKCAGREVLRCLCYAFDTGL**************DSVHNLAKSIITKYFSPELFGSDKGLTDILQDLRSFSAALTDLMNVCTDNEAHARDEEKFYCILHQIMEKLNGREPVSTFEFIESGIVKSLVTYLTNGLYLRDNAELHIPHSDLFVVEKRFEVLARLLLPYSDNLSEDSPVSVLIQKLQSALSSLENFPVILSHSFKLRSSYATVPYGRCIAHPCLRVRFVRGDGETCLSDFSEDLLTVDPFSSLEAIEGYLWPKVTIKESKDVESDCLMDQMNGQPLYLSSNSKSI********************************KMQDCKIKLTFDLDGQKLERTLTLYQAILQKQIKTDGEVIAGAKLWTQVYTIIYRRAMESKCNDPKNCVHLHPISDGDEARLHCASFFSSLFACQLAFELDKSSPIYDILFLLKSLEGVNRLTCHLISHERIRAYAEGRFDNLDDLKVEVHSLRQNDFVNSKLTEKLE************GVPSWCNQLMASCPFLFSLKQGASIFS
*************************************************************************************PRHRG*RELQRRRSSSDHGKLRSILACLSEDTDPSRHITSLTELCEVLSFAMEDSLSSMMADSLSPVLVKLARHETNPDIMLLAVRAITYLCDIFPRSSGLLVRHDAVPALCQRLKAIEYLDVAEQCLQALEKISRDQPHACLEGGAIMAALTYIDFFSTSIQRVALSTVANICKKLPSECPSHLMEAVPILSNLLQYEDRQLVESVAICLIKIAEQLSQSSQMLDEVCSHGLINQTTHLLNLNSRTTLSQPIYYGLIGLLVKISSGSILNIGSVLKDILSTYDLSHGMSSPHMVDGHCNQVHEVLKLLNELLPTSVGDQCVQLVLDKQSFLVDRPDLLQNFGMDILPMLIQVVNSGANIFVCYGCLSVINKLVYLSKSDMLIELLKSANIPSFLAGVFTRKDHHVLILALEIAEMILQKLSDTFLNSFVKEGVFFAIDALLT**************************************************CKLDKDSVHNLAKSIITKYFSPELFGSDKGLTDILQDLRSFSAALTDLMNVCTDNEAHARDEEKFYCILHQIMEKLNGREPVSTFEFIESGIVKSLVTYLTNGLYLRDNAELHIPHSDLFVVEKRFEVLARLLLPYSDNLSEDSPVSVLIQKLQSALSSLENFPVILSHSFK***SYATVPYGRCIAHPCLRVRFVRGDGETCLSDFSEDLLTVDPFSSLEAIEGYLWPKVTIK***************************************************************DCKIKLTFDLDGQKLERTLTLYQAILQKQIKT******GAKLWTQVYTIIYRRAME*************************ASFFSSLFACQLAFELDKSSPIYDILFLLKSLEGVNRLTCHLISHERIRAYAEGRFDNLDDLKVEVHSLRQNDFVNSKLTEKLEQQMRDSAAVSTGGVPSWCNQLMASCPFLFSLKQGASIFS
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MGNRGQKRMEMAVDLPDDKRACSSLDFRPSTSNSSVQTHLNSTNSTPETHHNDMDTSSSASASSRSEEEPEKDAGYGSCDSDDAEPRHRGLRELQRRRSSSDHGKLRSILACLSEDTDPSRHITSLTELCEVLSFAMEDSLSSMMADSLSPVLVKLARHETNPDIMLLAVRAITYLCDIFPRSSGLLVRHDAVPALCQRLKAIEYLDVAEQCLQALEKISRDQPHACLEGGAIMAALTYIDFFSTSIQRVALSTVANICKKLPSECPSHLMEAVPILSNLLQYEDRQLVESVAICLIKIAEQLSQSSQMLDEVCSHGLINQTTHLLNLNSRTTLSQPIYYGLIGLLVKISSGSILNIGSVLKDILSTYDLSHGMSSPHMVDGHCNQVHEVLKLLNELLPTSVGDQCVQLVLDKQSFLVDRPDLLQNFGMDILPMLIQVVNSGANIFVCYGCLSVINKLVYLSKSDMLIELLKSANIPSFLAGVFTRKDHHVLILALEIAEMILQKLSDTFLNSFVKEGVFFAIDALLTPEKCSQLFPAFSGIQLCPSSSQKCAGREVLRCLCYAFDTGLSSSASEKQSCKLDKDSVHNLAKSIITKYFSPELFGSDKGLTDILQDLRSFSAALTDLMNVCTDNEAHARDEEKFYCILHQIMEKLNGREPVSTFEFIESGIVKSLVTYLTNGLYLRDNAELHIPHSDLFVVEKRFEVLARLLLPYSDNLSEDSPVSVLIQKLQSALSSLENFPVILSHSFKLRSSYATVPYGRCIAHPCLRVRFVRGDGETCLSDFSEDLLTVDPFSSLEAIEGYLWPKVTIKESKDVESDCLMDQMNGQPLYLSSNSKSILGESSESMEHESTSAGLTPVKHDSISSTSGVPKMQDCKIKLTFDLDGQKLERTLTLYQAILQKQIKTDGEVIAGAKLWTQVYTIIYRRAMESKCNDPKNCVHLHPISDGDEARLHCASFFSSLFACQLAFELDKSSPIYDILFLLKSLEGVNRLTCHLISHERIRAYAEGRFDNLDDLKVEVHSLRQNDFVNSKLTEKLEQQMRDSAAVSTGGVPSWCNQLMASCPFLFSLKQGASIFS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query1079 2.2.26 [Sep-21-2011]
Q9LYZ7 1502 E3 ubiquitin-protein liga yes no 0.968 0.695 0.552 0.0
Q6WWW4 1888 E3 ubiquitin-protein liga no no 0.657 0.375 0.382 1e-138
F1RCR6 2026 E3 ubiquitin-protein liga yes no 0.253 0.134 0.300 6e-33
E1B7Q7 1992 E3 ubiquitin-protein liga yes no 0.243 0.132 0.308 7e-33
Q14669 1992 E3 ubiquitin-protein liga yes no 0.243 0.132 0.308 8e-33
B4F6W9 2056 E3 ubiquitin-protein liga yes no 0.192 0.101 0.342 1e-31
G5E870 2025 E3 ubiquitin-protein liga yes no 0.192 0.102 0.338 2e-31
F1LP64 2025 E3 ubiquitin-protein liga yes no 0.192 0.102 0.338 2e-31
Q10435 1647 Probable ubiquitin fusion yes no 0.202 0.132 0.315 1e-22
P33202 1483 Ubiquitin fusion degradat yes no 0.348 0.253 0.224 6e-12
>sp|Q9LYZ7|UPL4_ARATH E3 ubiquitin-protein ligase UPL4 OS=Arabidopsis thaliana GN=UPL4 PE=1 SV=1 Back     alignment and function desciption
 Score = 1111 bits (2873), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 613/1110 (55%), Positives = 793/1110 (71%), Gaps = 65/1110 (5%)

Query: 1    MGNRGQKRMEMAVDLPDDKRACSSLDFRPSTSNSSVQTHLNSTNSTPETHHNDMDTSSSA 60
            M NRGQKRME+  +LP DKRAC+S DFRPSTS SSVQ   N TN   E    DMDTSSSA
Sbjct: 1    MENRGQKRMEVVEELPADKRACNSQDFRPSTSGSSVQAQANDTNPGHENVDADMDTSSSA 60

Query: 61   SASSRSEEEPEKD-----AGYGSCDSDDAEPRHRGLRELQRRRSSSDHGKLRSILACLSE 115
            S SSRS+EE +++     + YGSCDSD+ +PR R L++ QR+RSS DHGKL+S+L  L+ 
Sbjct: 61   SPSSRSDEEEQEEQDKEDSDYGSCDSDEEDPRQRVLQDYQRQRSSGDHGKLKSLLLNLTG 120

Query: 116  DTDPSRHITSLTELCEVLSFAMEDSLSSMMADSLSPVLVKLARHETNPDIMLLAVRAITY 175
            +TDPS  ++ LTELCEVLSF+ E+SLSS+MA+ LSPVLVKLA+HE N DIMLLA+RAITY
Sbjct: 121  ETDPSGQLSRLTELCEVLSFSTEESLSSVMANMLSPVLVKLAKHENNADIMLLAIRAITY 180

Query: 176  LCDIFPRSSGLLVRHDAVPALCQRLKAIEYLDVAEQCLQALEKISRDQPHACLEGGAIMA 235
            LCD++P S   LVRHD +PALCQRL  IEYLDVAEQCLQALEKISRD+P ACL  GAIMA
Sbjct: 181  LCDVYPPSVEFLVRHDTIPALCQRLLTIEYLDVAEQCLQALEKISRDEPVACLNAGAIMA 240

Query: 236  ALTYIDFFSTSIQRVALSTVANICKKLPSECPSHLMEAVPILSNLLQYEDRQLVESVAIC 295
             L++IDFFSTSIQRVA+STV NICK+L SE PS  M+AVPIL  LLQYEDRQLVE+VAIC
Sbjct: 241  VLSFIDFFSTSIQRVAISTVVNICKQLSSESPSPFMDAVPILCTLLQYEDRQLVENVAIC 300

Query: 296  LIKIAEQLSQSSQMLDEVCSHGLINQTTHLLNLNSRTTLSQPIYYGLIGLLVKISSGSI- 354
            L KIA+Q S+S  MLD++C HGLIN++THLLNLNSRTTLSQP+Y G+IG+L K+SSGS  
Sbjct: 301  LTKIADQASESPAMLDQLCRHGLINESTHLLNLNSRTTLSQPVYNGVIGMLRKLSSGSAL 360

Query: 355  -------LNIGSVLKDILSTYDLSHGMSSPHMVDGHCNQVHEVLKLLNELLPTS-VGDQC 406
                   LNIG  LK+I+STYD+SH +SS H ++   NQVHEVLKL+ ELLP S V D  
Sbjct: 361  AFRTLYELNIGYSLKEIMSTYDISHSVSSTHPINACSNQVHEVLKLVIELLPASPVEDN- 419

Query: 407  VQLVLDKQSFLVDRPDLLQNFGMDILPMLIQVVNSGANIFVCYGCLSVINKLVYLSKSDM 466
             QL  +K+SFLV++PDLLQ FG D+LP++IQV+NSGAN++V YGCLS I+KL  LSKS  
Sbjct: 420  -QLASEKESFLVNQPDLLQQFGRDMLPVMIQVLNSGANVYVSYGCLSAIHKLTCLSKSGD 478

Query: 467  LIELLKSANIPSFLAGVFTRKDHHVLILALEIAEMILQKLSDTFLNSFVKEGVFFAIDAL 526
            ++ELLK+ N+ S LAG+ +RKDHHV+++AL++AE++L+K  DTFLNSF+KEGVFFAI+AL
Sbjct: 479  IVELLKNTNMSSVLAGILSRKDHHVIVVALQVAEVLLEKYRDTFLNSFIKEGVFFAIEAL 538

Query: 527  LTPEKCSQLFPAFSGIQLCPSSSQKCAGREVLRCLCYAFDTGLSSSASEKQSCKLDKDSV 586
            L+ ++  Q        Q     SQK   +E+++CLC +F+    S +S  Q+CK++KDSV
Sbjct: 539  LSSDRGQQ-------NQGSADLSQKPVTKEIVKCLCQSFE---RSLSSSSQTCKIEKDSV 588

Query: 587  HNLAKSIITKYFSPELFGSDKGLTDILQDLRSFSAALTDLMNVCTDNEAHARDEEKFYCI 646
            + LA  I   +F PE+F S+KGLTD+LQ+L++ S AL++LM V  D  AH   +EKF+ I
Sbjct: 589  YVLATRIKEGFFGPEVFNSEKGLTDVLQNLKNLSVALSELMTVPID--AHVLHDEKFFSI 646

Query: 647  LHQIMEKLNGREPVSTFEFIESGIVKSLVTYLTNGLYLRDNAELHIPHSDLFVVEKRFEV 706
             +QIME+LNGRE VSTFEFIESG+VKSL +YL+NGLY R  ++       L  + KRFEV
Sbjct: 647  WNQIMERLNGRESVSTFEFIESGVVKSLASYLSNGLYQRKLSKGGPECDSLPFIGKRFEV 706

Query: 707  LARLLLPYSDNLSEDSPVSVLIQKLQSALSSLENFPVILSHSFKLRSSYATVPYGRCIAH 766
              RLL  +SD    ++  S+LIQKLQ++LSSLENFP++LS   K ++S+A +P GRC ++
Sbjct: 707  FTRLL--WSDG---EATSSLLIQKLQNSLSSLENFPIVLSQFLKQKNSFAAIPNGRCTSY 761

Query: 767  PCLRVRFVRGDGETCLSDFSEDLLTVDPFSSLEAIEGYLWPKVTIK-----ESKDVESDC 821
            PCL+VRF++ +GET L D+S+D +TVDP   L+A++ YLWPKV I+     E+KD   +C
Sbjct: 762  PCLKVRFLKAEGETSLRDYSQDFVTVDPLCYLDAVDQYLWPKVNIEPIDSVEAKDQAIEC 821

Query: 822  LMDQMNGQPLYLSSNSKSILGESSESMEHESTSAGLTPVKHDSISSTSGVPKMQ------ 875
               Q       L S S S   ESS  ME +S S+  + ++   +   + +P  Q      
Sbjct: 822  QSSQ-------LQSTSISCQAESSSPMEIDSESSDASQLQGSQVEDQTQLPGQQNASSSE 874

Query: 876  ------DCKIKLTFDLDGQKLERTLTLYQAILQKQIKTDGEVIAGAKLWTQVYTIIYRRA 929
                  D   +L F L+G +L+R+LT+YQAIL  ++K++ E    +KL +  + I Y R+
Sbjct: 875  TSSEKEDAVPRLLFRLEGLELDRSLTVYQAILLHKLKSESEATNDSKL-SGPHNITYERS 933

Query: 930  MESKCNDPKNCVHLHPISDGDEARLHCASFFSSLFACQLAFELDKSS-PIYDILFLLKSL 988
              ++  D +  +      + DE R     F S LF  +LA  L  SS P YDILFLLKSL
Sbjct: 934  --AQLGDSRENLFPPGSMEDDEYR----PFLSYLFTHRLALRLKGSSHPPYDILFLLKSL 987

Query: 989  EGVNRLTCHLISHERIRAYAEGRFDNLDDLKVEVHSLRQNDFVNSKLTEKLEQQMRDSAA 1048
            EG+NR   HLIS ERI A+ EGR +NLDDL+V+V  +  ++FV+SKLTEKLEQQ+RDS A
Sbjct: 988  EGMNRFLFHLISLERINAFGEGRLENLDDLRVQVRPVPHSEFVSSKLTEKLEQQLRDSFA 1047

Query: 1049 VSTGGVPSWCNQLMASCPFLFSLKQGASIF 1078
            VST G+P W N LM SCP LFS +  +  F
Sbjct: 1048 VSTCGLPPWFNDLMDSCPCLFSFEAKSKYF 1077
Probable E3 ubiquitin-protein ligase which mediates ubiquitination and subsequent proteasomal degradation of target proteins.
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -
>sp|Q6WWW4|UPL3_ARATH E3 ubiquitin-protein ligase UPL3 OS=Arabidopsis thaliana GN=UPL3 PE=1 SV=1 Back     alignment and function description
>sp|F1RCR6|TRIPC_DANRE E3 ubiquitin-protein ligase TRIP12 OS=Danio rerio GN=trip12 PE=2 SV=1 Back     alignment and function description
>sp|E1B7Q7|TRIPC_BOVIN E3 ubiquitin-protein ligase TRIP12 OS=Bos taurus GN=TRIP12 PE=2 SV=2 Back     alignment and function description
>sp|Q14669|TRIPC_HUMAN E3 ubiquitin-protein ligase TRIP12 OS=Homo sapiens GN=TRIP12 PE=1 SV=1 Back     alignment and function description
>sp|B4F6W9|TRIPC_XENTR E3 ubiquitin-protein ligase TRIP12 OS=Xenopus tropicalis GN=trip12 PE=2 SV=1 Back     alignment and function description
>sp|G5E870|TRIPC_MOUSE E3 ubiquitin-protein ligase TRIP12 OS=Mus musculus GN=Trip12 PE=1 SV=1 Back     alignment and function description
>sp|F1LP64|TRIPC_RAT E3 ubiquitin-protein ligase TRIP12 OS=Rattus norvegicus GN=Trip12 PE=2 SV=1 Back     alignment and function description
>sp|Q10435|YDE1_SCHPO Probable ubiquitin fusion degradation protein C12B10.01c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC12B10.01c PE=3 SV=2 Back     alignment and function description
>sp|P33202|UFD4_YEAST Ubiquitin fusion degradation protein 4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=UFD4 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1079
255568422 1561 ubiquitin protein ligase E3a, putative [ 0.997 0.689 0.634 0.0
359481367 1575 PREDICTED: E3 ubiquitin-protein ligase U 0.997 0.683 0.614 0.0
356545963 1558 PREDICTED: E3 ubiquitin-protein ligase U 0.992 0.687 0.586 0.0
356537477 1557 PREDICTED: E3 ubiquitin-protein ligase U 0.990 0.686 0.583 0.0
297741483 1487 unnamed protein product [Vitis vinifera] 0.954 0.692 0.590 0.0
449440375 1508 PREDICTED: LOW QUALITY PROTEIN: E3 ubiqu 0.984 0.704 0.568 0.0
449526027 1456 PREDICTED: LOW QUALITY PROTEIN: E3 ubiqu 0.984 0.729 0.566 0.0
297806227 1509 ubiquitin-protein ligase 4 [Arabidopsis 0.974 0.696 0.558 0.0
15242560 1502 E3 ubiquitin-protein ligase UPL4 [Arabid 0.968 0.695 0.552 0.0
357129035 1478 PREDICTED: E3 ubiquitin-protein ligase U 0.864 0.631 0.414 0.0
>gi|255568422|ref|XP_002525185.1| ubiquitin protein ligase E3a, putative [Ricinus communis] gi|223535482|gb|EEF37151.1| ubiquitin protein ligase E3a, putative [Ricinus communis] Back     alignment and taxonomy information
 Score = 1371 bits (3548), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 720/1135 (63%), Positives = 864/1135 (76%), Gaps = 59/1135 (5%)

Query: 1    MGNRGQKRMEMAVDLPDDKRACSSLDFRPSTSNSSVQTHLNSTNSTPETHHNDMDTSSSA 60
            MGNRGQKR E+  +LP DKRACSSL+FRPS+SNSS+QTH+NSTNSTPETH  DMDTSSS 
Sbjct: 1    MGNRGQKRTEVIDELPADKRACSSLEFRPSSSNSSIQTHVNSTNSTPETHEADMDTSSSG 60

Query: 61   SASSRSEEEPE-KDAGYGSCDSDDAEPRHRGLRELQRRRSSSDHGKLRSILACLSEDTDP 119
            SASS SEEE   +D+ YGSCDSDDA PRH  LR  QR RS  DHG+LR+ L+ LSE T+P
Sbjct: 61   SASSHSEEEEHERDSAYGSCDSDDAIPRHSSLRNFQRHRSLGDHGRLRNALSNLSEGTEP 120

Query: 120  SRHITSLTELCEVLSFAMEDSLSSMMADSLSPVLVKLARHETNPDIMLLAVRAITYLCDI 179
            S  + +LT+LCEVLSF  +DSLSSMMAD+LSPVLV+LARHE+NPD+MLLA+RA+TYLCD 
Sbjct: 121  SGQLAALTDLCEVLSFCTDDSLSSMMADTLSPVLVRLARHESNPDVMLLAIRALTYLCDA 180

Query: 180  FPRSSGLLVRHDAVPALCQRLKAIEYLDVAEQCLQALEKISRDQPHACLEGGAIMAALTY 239
             PR+S  LVRHDAVP LC+RL AIEYLDVAEQCLQALEKISR+QP  CL+ GAIMA L++
Sbjct: 181  CPRASSYLVRHDAVPVLCERLMAIEYLDVAEQCLQALEKISREQPLPCLQAGAIMAVLSF 240

Query: 240  IDFFSTSIQRVALSTVANICKKLPSECPSHLMEAVPILSNLLQYEDRQLVESVAICLIKI 299
            IDFFSTS+QRV+LSTV NICKKLP+ECPS  MEAVP L N+LQYEDRQLVESV ICL+KI
Sbjct: 241  IDFFSTSVQRVSLSTVVNICKKLPTECPSPFMEAVPTLCNILQYEDRQLVESVVICLMKI 300

Query: 300  AEQLSQSSQMLDEVCSHGLINQTTHLLNLNSRTTLSQPIYYGLIGLLVKISSGSI----- 354
            AE++SQSS+M+DE C HGLI+Q  HL++LNSRTTLSQPIY GLIGLLVK+SSGSI     
Sbjct: 301  AERVSQSSEMMDEFCKHGLIDQAAHLIHLNSRTTLSQPIYNGLIGLLVKLSSGSIVAFRS 360

Query: 355  ---LNIGSVLKDILSTYDLSHGMSSPHMVDGHCNQVHEVLKLLNELLPTSVGDQCVQL-V 410
               LNI S LKDIL+TYD+SHGMSS H VDG  NQV+EVLKLLNELLP  V DQ VQ   
Sbjct: 361  LHELNISSTLKDILATYDVSHGMSSLHTVDGQSNQVNEVLKLLNELLPQVVKDQDVQQEA 420

Query: 411  LDKQSFLVDRPDLLQNFGMDILPMLIQVVNSGANIFVCYGCLSVINKLVYLSKSDMLIEL 470
             DK+SFLV+ PDLL  FG DILPML+QVVNSGANI+VCYGCLSVI KLV  SKSDML+EL
Sbjct: 421  SDKESFLVNHPDLLLKFGSDILPMLVQVVNSGANIYVCYGCLSVIKKLVSFSKSDMLVEL 480

Query: 471  LKSANIPSFLAGVFTRKDHHVLILALEIAEMILQKLSDTFLNSFVKEGVFFAIDALLTPE 530
            LK+ANI SFLAGVFTRKDHHVLILAL+IAE+ILQ+ SD FLNSF+KEGVFFAIDAL+TPE
Sbjct: 481  LKTANISSFLAGVFTRKDHHVLILALQIAEVILQRFSDVFLNSFIKEGVFFAIDALMTPE 540

Query: 531  KCSQ-LFPAFSGIQLCPSSSQKCAGREVLRCLCYAFDTGLSSSASEKQSCKLDKDSVHNL 589
            KCS  +F + +GIQL P SSQK A + VL+CLCYAFDTG S  + E  +CK++KDSV +L
Sbjct: 541  KCSHSMFLSCNGIQLPPESSQKLASKAVLKCLCYAFDTGQSPISLETAACKIEKDSVQSL 600

Query: 590  AKSIITKYFSPELFGSDKGLTDILQDLRSFSAALTDLMNVCTDNEAHARDEEKFYCILHQ 649
            A+ I   YF+PEL  S+ GLTDILQ LR+ SA+L DLMN+    +A ++DEEKF C+L Q
Sbjct: 601  AEHISVTYFAPELCNSENGLTDILQKLRALSASLGDLMNMPVAVDASSQDEEKFDCLLRQ 660

Query: 650  IMEKLNGREPVSTFEFIESGIVKSLVTYLTNGLYLRDNAELHIPHSDLFVVEKRFEVLAR 709
            IME LNGRE VSTFEFIESGIVKSLV Y++NG YLR+  ELH   +    VEKRF+V AR
Sbjct: 661  IMETLNGRETVSTFEFIESGIVKSLVNYISNGQYLREKVELHDRRAHYHAVEKRFQVFAR 720

Query: 710  LLLPYSDNLSEDSPVSVLIQKLQSALSSLENFPVILSHSFKLRSSYATVPYGRCIAHPCL 769
            L   YS +L+ + PVSVL++KLQSALSSLENFPVIL+H  K R+ +ATVP G CI+HPCL
Sbjct: 721  LFSSYS-SLAGELPVSVLVRKLQSALSSLENFPVILTHLSKQRNWFATVPNGHCISHPCL 779

Query: 770  RVRFVRGDGETCLSDFSEDLLTVDPFSSLEAIEGYLWPKVTIKESKDVE-SDCLMDQMNG 828
            +VRF+RG+GETCLSD+S+D +TVDPFSSL+A+EG+L P+V I+ +K+ E +  ++D +  
Sbjct: 780  KVRFLRGEGETCLSDYSDDAITVDPFSSLDAVEGFLLPRVRIERTKETEIAAQVVDPIES 839

Query: 829  QPLYLSSNSKSILGESSESMEHESTSAGLTPVKHD----SISSTSGV-----------PK 873
                + SN  S   E S   +  S S  L  +K D    S+SS               P 
Sbjct: 840  VSFQIPSNVNSGQDEVSGPRQPGSMSTDLPEIKEDEANLSVSSLEQAGNFQKGNPGEKPS 899

Query: 874  MQDCKI---------------------------KLTFDLDGQKLERTLTLYQAILQKQIK 906
              D  I                           KL F L+G++L+RTLTLYQAI+Q++IK
Sbjct: 900  SSDTNIVVQFPPGADISRKSQHRSSSSKEYTSPKLAFYLEGKELDRTLTLYQAIIQQKIK 959

Query: 907  TDGEVIAGAKLWTQVYTIIYRRAMESKCNDPKNCVHL---HPISDGDEARLHCASFFSSL 963
             D E+  GAKLW +VYT+ YR A E K ++P+ C +L     +SD  EA +HC SFF+S+
Sbjct: 960  ADHEINTGAKLWCRVYTLTYRIAAECKDDNPEECHNLAQNSSVSDMIEASMHCGSFFTSI 1019

Query: 964  FACQLAFELDKSSPIYDILFLLKSLEGVNRLTCHLISHERIRAYAEGRFDNLDDLKVEVH 1023
            F  +LA  LDKSSP YD+LF+LKSLEG+NR T HL+S ERI A++ G  DNLD+L+V VH
Sbjct: 1020 FNRELASNLDKSSPTYDVLFMLKSLEGLNRFTFHLMSRERIHAFSAGLIDNLDNLEVAVH 1079

Query: 1024 SLRQNDFVNSKLTEKLEQQMRDSAAVSTGGVPSWCNQLMASCPFLFSLKQGASIF 1078
            S+ QN+FV+SKLTEKLEQQMRDS A + GG+P WC+QLMASCPFLFS +     F
Sbjct: 1080 SVSQNEFVSSKLTEKLEQQMRDSFA-AVGGMPLWCSQLMASCPFLFSFEARCKYF 1133

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359481367|ref|XP_002273203.2| PREDICTED: E3 ubiquitin-protein ligase UPL4-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|356545963|ref|XP_003541402.1| PREDICTED: E3 ubiquitin-protein ligase UPL4-like [Glycine max] Back     alignment and taxonomy information
>gi|356537477|ref|XP_003537253.1| PREDICTED: E3 ubiquitin-protein ligase UPL4-like [Glycine max] Back     alignment and taxonomy information
>gi|297741483|emb|CBI32615.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449440375|ref|XP_004137960.1| PREDICTED: LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase UPL4-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449526027|ref|XP_004170016.1| PREDICTED: LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase UPL4-like, partial [Cucumis sativus] Back     alignment and taxonomy information
>gi|297806227|ref|XP_002870997.1| ubiquitin-protein ligase 4 [Arabidopsis lyrata subsp. lyrata] gi|297316834|gb|EFH47256.1| ubiquitin-protein ligase 4 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|15242560|ref|NP_195908.1| E3 ubiquitin-protein ligase UPL4 [Arabidopsis thaliana] gi|75181166|sp|Q9LYZ7.1|UPL4_ARATH RecName: Full=E3 ubiquitin-protein ligase UPL4; Short=Ubiquitin-protein ligase 4 gi|7413563|emb|CAB86042.1| putative protein [Arabidopsis thaliana] gi|332003148|gb|AED90531.1| E3 ubiquitin-protein ligase UPL4 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|357129035|ref|XP_003566174.1| PREDICTED: E3 ubiquitin-protein ligase UPL4-like [Brachypodium distachyon] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1079
TAIR|locus:2151306 1502 UPL4 "AT5G02880" [Arabidopsis 0.973 0.699 0.526 1.5e-280
TAIR|locus:2121224 1888 KAK "AT4G38600" [Arabidopsis t 0.275 0.157 0.462 5.2e-143
DICTYBASE|DDB_G0287221 1898 DDB_G0287221 "armadillo repeat 0.261 0.148 0.367 8.7e-72
UNIPROTKB|B4F6W9 2056 trip12 "E3 ubiquitin-protein l 0.269 0.141 0.283 1.6e-48
UNIPROTKB|J9NRQ4 2011 TRIP12 "Uncharacterized protei 0.269 0.144 0.280 4.1e-48
UNIPROTKB|G4NHH2 1923 MGG_03841 "E3 ubiquitin-protei 0.265 0.149 0.325 5.8e-48
ZFIN|ZDB-GENE-041111-262 2095 trip12 "thyroid hormone recept 0.270 0.139 0.280 6.3e-48
UNIPROTKB|E1BZV7 2035 TRIP12 "Uncharacterized protei 0.269 0.142 0.283 8.5e-48
RGD|1306607 2025 Trip12 "thyroid hormone recept 0.269 0.143 0.280 1.8e-47
UNIPROTKB|Q14669 1992 TRIP12 "E3 ubiquitin-protein l 0.269 0.146 0.280 2.6e-47
TAIR|locus:2151306 UPL4 "AT5G02880" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2696 (954.1 bits), Expect = 1.5e-280, P = 1.5e-280
 Identities = 582/1105 (52%), Positives = 749/1105 (67%)

Query:     1 MGNRGQKRMEMAVDLPDDKRACSSLDFRPSTSNSSVQTHLNSTNSTPETHHNDMDTXXXX 60
             M NRGQKRME+  +LP DKRAC+S DFRPSTS SSVQ   N TN   E    DMDT    
Sbjct:     1 MENRGQKRMEVVEELPADKRACNSQDFRPSTSGSSVQAQANDTNPGHENVDADMDTSSSA 60

Query:    61 XXXXXXXXXPEK-----DAGYGSCDSDDAEPRHRGLRELQXXXXXXDHGKLRSILACLSE 115
                       ++     D+ YGSCDSD+ +PR R L++ Q      DHGKL+S+L  L+ 
Sbjct:    61 SPSSRSDEEEQEEQDKEDSDYGSCDSDEEDPRQRVLQDYQRQRSSGDHGKLKSLLLNLTG 120

Query:   116 DTDPSRHITSLTELCEVLSFXXXXXXXXXXXXXXXPVLVKLARHETNPDIMLLAVRAITY 175
             +TDPS  ++ LTELCEVLSF               PVLVKLA+HE N DIMLLA+RAITY
Sbjct:   121 ETDPSGQLSRLTELCEVLSFSTEESLSSVMANMLSPVLVKLAKHENNADIMLLAIRAITY 180

Query:   176 LCDIFPRSSGLLVRHDAVPALCQRLKAIEYLDVAEQCLQALEKISRDQPHACLEGGAIMA 235
             LCD++P S   LVRHD +PALCQRL  IEYLDVAEQCLQALEKISRD+P ACL  GAIMA
Sbjct:   181 LCDVYPPSVEFLVRHDTIPALCQRLLTIEYLDVAEQCLQALEKISRDEPVACLNAGAIMA 240

Query:   236 ALTYIDFFSTSIQRVALSTVANICKKLPSECPSHLMEAVPILSNLLQYEDRQLVESVAIC 295
              L++IDFFSTSIQRVA+STV NICK+L SE PS  M+AVPIL  LLQYEDRQLVE+VAIC
Sbjct:   241 VLSFIDFFSTSIQRVAISTVVNICKQLSSESPSPFMDAVPILCTLLQYEDRQLVENVAIC 300

Query:   296 LIKIAEQLSQSSQMLDEVCSHGLINQTTHLLNLNSRTTLSQPIYYGLIGLLVKISSGSIL 355
             L KIA+Q S+S  MLD++C HGLIN++THLLNLNSRTTLSQP+Y G+IG+L K+SSGS L
Sbjct:   301 LTKIADQASESPAMLDQLCRHGLINESTHLLNLNSRTTLSQPVYNGVIGMLRKLSSGSAL 360

Query:   356 --------NIGSVLKDILSTYDLSHGMSSPHMVDGHCNQVHEVLKLLNELLPTS-VGDQC 406
                     NIG  LK+I+STYD+SH +SS H ++   NQVHEVLKL+ ELLP S V D  
Sbjct:   361 AFRTLYELNIGYSLKEIMSTYDISHSVSSTHPINACSNQVHEVLKLVIELLPASPVEDN- 419

Query:   407 VQLVLDKQSFLVDRPDLLQNFGMDILPMLIQVVNSGANIFVCYGCLSVINKLVYLSKSDM 466
              QL  +K+SFLV++PDLLQ FG D+LP++IQV+NSGAN++V YGCLS I+KL  LSKS  
Sbjct:   420 -QLASEKESFLVNQPDLLQQFGRDMLPVMIQVLNSGANVYVSYGCLSAIHKLTCLSKSGD 478

Query:   467 LIELLKSANIPSFLAGVFTRKDHHVXXXXXXXXXXXXQKLSDTFLNSFVKEGVFFAIDAL 526
             ++ELLK+ N+ S LAG+ +RKDHHV            +K  DTFLNSF+KEGVFFAI+AL
Sbjct:   479 IVELLKNTNMSSVLAGILSRKDHHVIVVALQVAEVLLEKYRDTFLNSFIKEGVFFAIEAL 538

Query:   527 LTPEKCSQLFPAFSGIQLCPSSSQKCAGREVLRCLCYAFDTGLSSSASEKQSCKLDKDSV 586
             L+ ++  Q        Q     SQK   +E+++CLC +F+  LSSS+   Q+CK++KDSV
Sbjct:   539 LSSDRGQQN-------QGSADLSQKPVTKEIVKCLCQSFERSLSSSS---QTCKIEKDSV 588

Query:   587 HNLAKSIITKYFSPELFGSDKGLTDILQDLRSFSAALTDLMNVCTDNEAHARDEEKFYCI 646
             + LA  I   +F PE+F S+KGLTD+LQ+L++ S AL++LM V  D  AH   +EKF+ I
Sbjct:   589 YVLATRIKEGFFGPEVFNSEKGLTDVLQNLKNLSVALSELMTVPID--AHVLHDEKFFSI 646

Query:   647 LHQIMEKLNGREPVSTFEFIESGIVKSLVTYLTNGLYLRDNAELHIPHSD-LFVVEKRFE 705
              +QIME+LNGRE VSTFEFIESG+VKSL +YL+NGLY R  ++   P  D L  + KRFE
Sbjct:   647 WNQIMERLNGRESVSTFEFIESGVVKSLASYLSNGLYQRKLSKGG-PECDSLPFIGKRFE 705

Query:   706 VLARLLLPYSDNLSEDSPVSVLIQKLQSALSSLENFPVILSHSFKLRSSYATVPYGRCIA 765
             V  RLL  +SD    ++  S+LIQKLQ++LSSLENFP++LS   K ++S+A +P GRC +
Sbjct:   706 VFTRLL--WSDG---EATSSLLIQKLQNSLSSLENFPIVLSQFLKQKNSFAAIPNGRCTS 760

Query:   766 HPCLRVRFVRGDGETCLSDFSEDLLTVDPFSSLEAIEGYLWPKVTIK-----ESKDVESD 820
             +PCL+VRF++ +GET L D+S+D +TVDP   L+A++ YLWPKV I+     E+KD   +
Sbjct:   761 YPCLKVRFLKAEGETSLRDYSQDFVTVDPLCYLDAVDQYLWPKVNIEPIDSVEAKDQAIE 820

Query:   821 CLMDQMNGQPLYLSSNSKSILGXXXXXXXXXXXXAGLT------PVKHDSISSTSGVPKM 874
             C   Q+    +   + S S +                       P + ++ SS +   K 
Sbjct:   821 CQSSQLQSTSISCQAESSSPMEIDSESSDASQLQGSQVEDQTQLPGQQNASSSETSSEK- 879

Query:   875 QDCKIKLTFDLDGQKLERTLTLYQAILQKQIKTDGEVIAGAKLWTQVYTIIYRRAMESKC 934
             +D   +L F L+G +L+R+LT+YQAIL  ++K++ E    +KL +  + I Y R+  ++ 
Sbjct:   880 EDAVPRLLFRLEGLELDRSLTVYQAILLHKLKSESEATNDSKL-SGPHNITYERS--AQL 936

Query:   935 NDPKNCVHLHPISDGDEARLHCASFFSSLFACQLAFELDKSS-PIYDILFLLKSLEGVNR 993
              D +  +      + DE R     F S LF  +LA  L  SS P YDILFLLKSLEG+NR
Sbjct:   937 GDSRENLFPPGSMEDDEYR----PFLSYLFTHRLALRLKGSSHPPYDILFLLKSLEGMNR 992

Query:   994 LTCHLISHERIRAYAEGRFDNLDDLKVEVHSLRQNDFVNSKLTEKLEQQMRDSAAVSTGG 1053
                HLIS ERI A+ EGR +NLDDL+V+V  +  ++FV+SKLTEKLEQQ+RDS AVST G
Sbjct:   993 FLFHLISLERINAFGEGRLENLDDLRVQVRPVPHSEFVSSKLTEKLEQQLRDSFAVSTCG 1052

Query:  1054 VPSWCNQLMASCPFLFSLKQGASIF 1078
             +P W N LM SCP LFS +  +  F
Sbjct:  1053 LPPWFNDLMDSCPCLFSFEAKSKYF 1077
GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS;IBA
GO:0005622 "intracellular" evidence=IEA
GO:0005634 "nucleus" evidence=ISM
GO:0006464 "cellular protein modification process" evidence=IEA
GO:0016881 "acid-amino acid ligase activity" evidence=IEA
GO:0042787 "protein ubiquitination involved in ubiquitin-dependent protein catabolic process" evidence=IBA
GO:0000151 "ubiquitin ligase complex" evidence=ISS
GO:0016567 "protein ubiquitination" evidence=ISS
TAIR|locus:2121224 KAK "AT4G38600" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0287221 DDB_G0287221 "armadillo repeat-containing protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|B4F6W9 trip12 "E3 ubiquitin-protein ligase TRIP12" [Xenopus (Silurana) tropicalis (taxid:8364)] Back     alignment and assigned GO terms
UNIPROTKB|J9NRQ4 TRIP12 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|G4NHH2 MGG_03841 "E3 ubiquitin-protein ligase UPL3" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-041111-262 trip12 "thyroid hormone receptor interactor 12" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|E1BZV7 TRIP12 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
RGD|1306607 Trip12 "thyroid hormone receptor interactor 12" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q14669 TRIP12 "E3 ubiquitin-protein ligase TRIP12" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9LYZ7UPL4_ARATH6, ., 3, ., 2, ., -0.55220.96840.6957yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh2_kg.6__201__AT5G02880.1
annotation not avaliable (1509 aa)
(Arabidopsis lyrata)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1079
cd00020120 cd00020, ARM, Armadillo/beta-catenin-like repeats 7e-07
>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats Back     alignment and domain information 
 Score = 48.8 bits (117), Expect = 7e-07
 Identities = 27/112 (24%), Positives = 48/112 (42%), Gaps = 5/112 (4%)

Query: 151 PVLVKLARHETNPDIMLLAVRAITYLCDIFPRSSGLLVRHDAVPALCQRLKAIEYLDVAE 210
           P LV L    ++ ++   A  A++ L      +   +V    +PAL Q LK  E  +V +
Sbjct: 10  PALVSLLSS-SDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLK-SEDEEVVK 67

Query: 211 QCLQALEKISRDQPH---ACLEGGAIMAALTYIDFFSTSIQRVALSTVANIC 259
             L AL  ++          LE G +   +  +D  +  IQ+ A   ++N+ 
Sbjct: 68  AALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 1079
KOG01681051 consensus Putative ubiquitin fusion degradation pr 100.0
COG5064526 SRP1 Karyopherin (importin) alpha [Intracellular t 100.0
KOG0166514 consensus Karyopherin (importin) alpha [Intracellu 100.0
KOG0166514 consensus Karyopherin (importin) alpha [Intracellu 100.0
COG5064526 SRP1 Karyopherin (importin) alpha [Intracellular t 100.0
PLN03200 2102 cellulose synthase-interactive protein; Provisiona 99.97
PLN03200 2102 cellulose synthase-interactive protein; Provisiona 99.95
KOG0170 621 consensus E3 ubiquitin protein ligase [Posttransla 99.94
KOG4224550 consensus Armadillo repeat protein VAC8 required f 99.73
KOG4224550 consensus Armadillo repeat protein VAC8 required f 99.66
PF05804708 KAP: Kinesin-associated protein (KAP) 99.53
PF10508503 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; 99.38
PF05804708 KAP: Kinesin-associated protein (KAP) 99.28
cd00020120 ARM Armadillo/beta-catenin-like repeats. An approx 99.25
PF04826254 Arm_2: Armadillo-like; InterPro: IPR006911 This en 99.19
KOG01681051 consensus Putative ubiquitin fusion degradation pr 99.1
cd00020120 ARM Armadillo/beta-catenin-like repeats. An approx 99.06
PF10508503 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; 99.04
KOG1048717 consensus Neural adherens junction protein Plakoph 99.01
KOG4199461 consensus Uncharacterized conserved protein [Funct 98.86
PRK09687280 putative lyase; Provisional 98.83
PF04826254 Arm_2: Armadillo-like; InterPro: IPR006911 This en 98.79
KOG1048717 consensus Neural adherens junction protein Plakoph 98.68
PTZ00429746 beta-adaptin; Provisional 98.61
KOG4199461 consensus Uncharacterized conserved protein [Funct 98.6
PRK09687280 putative lyase; Provisional 98.59
PRK13800897 putative oxidoreductase/HEAT repeat-containing pro 98.53
KOG1241859 consensus Karyopherin (importin) beta 1 [Nuclear s 98.4
PTZ00429746 beta-adaptin; Provisional 98.33
PF01602526 Adaptin_N: Adaptin N terminal region; InterPro: IP 98.31
PF01602526 Adaptin_N: Adaptin N terminal region; InterPro: IP 98.3
KOG21711075 consensus Karyopherin (importin) beta 3 [Nuclear s 98.29
PRK13800897 putative oxidoreductase/HEAT repeat-containing pro 98.28
KOG4500604 consensus Rho/Rac GTPase guanine nucleotide exchan 98.2
KOG0946970 consensus ER-Golgi vesicle-tethering protein p115 98.13
KOG21711075 consensus Karyopherin (importin) beta 3 [Nuclear s 98.11
KOG1293678 consensus Proteins containing armadillo/beta-caten 98.1
KOG2122 2195 consensus Beta-catenin-binding protein APC, contai 98.1
KOG2122 2195 consensus Beta-catenin-binding protein APC, contai 98.02
KOG4500604 consensus Rho/Rac GTPase guanine nucleotide exchan 98.02
KOG2023885 consensus Nuclear transport receptor Karyopherin-b 98.0
PF03224312 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004 97.91
PF0051441 Arm: Armadillo/beta-catenin-like repeat; InterPro: 97.9
KOG2160342 consensus Armadillo/beta-catenin-like repeat-conta 97.87
KOG1241859 consensus Karyopherin (importin) beta 1 [Nuclear s 97.86
KOG0946970 consensus ER-Golgi vesicle-tethering protein p115 97.84
KOG2160342 consensus Armadillo/beta-catenin-like repeat-conta 97.79
cd00256429 VATPase_H VATPase_H, regulatory vacuolar ATP synth 97.68
KOG02131172 consensus Splicing factor 3b, subunit 1 [RNA proce 97.65
PF12460415 MMS19_C: RNAPII transcription regulator C-terminal 97.63
PF0174997 IBB: Importin beta binding domain; InterPro: IPR00 97.61
PF0051441 Arm: Armadillo/beta-catenin-like repeat; InterPro: 97.52
PF05536543 Neurochondrin: Neurochondrin 97.52
PF03224312 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004 97.51
COG5215858 KAP95 Karyopherin (importin) beta [Intracellular t 97.5
cd00256429 VATPase_H VATPase_H, regulatory vacuolar ATP synth 97.47
COG5215858 KAP95 Karyopherin (importin) beta [Intracellular t 97.37
KOG1293678 consensus Proteins containing armadillo/beta-caten 97.35
PF1364688 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I 97.27
PF1351355 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O 97.24
KOG1061734 consensus Vesicle coat complex AP-1/AP-2/AP-4, bet 97.14
KOG2023885 consensus Nuclear transport receptor Karyopherin-b 97.12
PF12348228 CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi 97.09
KOG3678832 consensus SARM protein (with sterile alpha and arm 97.06
PF1364688 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I 97.05
PF10165446 Ric8: Guanine nucleotide exchange factor synembryn 96.98
KOG1824 1233 consensus TATA-binding protein-interacting protein 96.96
PF1351355 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O 96.96
KOG1059877 consensus Vesicle coat complex AP-3, delta subunit 96.93
smart0018541 ARM Armadillo/beta-catenin-like repeats. Approx. 4 96.9
PF05536543 Neurochondrin: Neurochondrin 96.9
KOG1061734 consensus Vesicle coat complex AP-1/AP-2/AP-4, bet 96.79
KOG02131172 consensus Splicing factor 3b, subunit 1 [RNA proce 96.78
KOG1242569 consensus Protein containing adaptin N-terminal re 96.76
KOG22741005 consensus Predicted importin 9 [Intracellular traf 96.73
KOG18241233 consensus TATA-binding protein-interacting protein 96.7
TIGR02270410 conserved hypothetical protein. Members are found 96.65
KOG1058948 consensus Vesicle coat complex COPI, beta subunit 96.43
KOG1059877 consensus Vesicle coat complex AP-3, delta subunit 96.36
KOG1222791 consensus Kinesin associated protein KAP [Intracel 96.34
TIGR02270410 conserved hypothetical protein. Members are found 96.32
smart0018541 ARM Armadillo/beta-catenin-like repeats. Approx. 4 96.32
KOG0212675 consensus Uncharacterized conserved protein [Funct 96.3
KOG1222791 consensus Kinesin associated protein KAP [Intracel 96.22
KOG2759442 consensus Vacuolar H+-ATPase V1 sector, subunit H 96.2
COG5181975 HSH155 U2 snRNP spliceosome subunit [RNA processin 96.19
KOG1062866 consensus Vesicle coat complex AP-1, gamma subunit 96.18
KOG1060968 consensus Vesicle coat complex AP-3, beta subunit 96.18
COG5181975 HSH155 U2 snRNP spliceosome subunit [RNA processin 96.14
KOG4413524 consensus 26S proteasome regulatory complex, subun 96.05
PF14664371 RICTOR_N: Rapamycin-insensitive companion of mTOR, 95.98
KOG4646173 consensus Uncharacterized conserved protein, conta 95.74
KOG2759442 consensus Vacuolar H+-ATPase V1 sector, subunit H 95.67
KOG17892235 consensus Endocytosis protein RME-8, contains DnaJ 95.66
PF13764802 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4 95.66
KOG1242569 consensus Protein containing adaptin N-terminal re 95.6
PF12460415 MMS19_C: RNAPII transcription regulator C-terminal 95.47
KOG1060968 consensus Vesicle coat complex AP-3, beta subunit 95.44
COG1413335 FOG: HEAT repeat [Energy production and conversion 95.42
KOG19911010 consensus Nuclear transport receptor RANBP7/RANBP8 95.21
PF05004309 IFRD: Interferon-related developmental regulator ( 95.14
KOG3678832 consensus SARM protein (with sterile alpha and arm 94.9
KOG1062866 consensus Vesicle coat complex AP-1, gamma subunit 94.68
KOG4413524 consensus 26S proteasome regulatory complex, subun 94.51
COG5656970 SXM1 Importin, protein involved in nuclear import 94.17
KOG0212675 consensus Uncharacterized conserved protein [Funct 94.06
KOG17892235 consensus Endocytosis protein RME-8, contains DnaJ 94.01
KOG4646173 consensus Uncharacterized conserved protein, conta 94.0
COG5369743 Uncharacterized conserved protein [Function unknow 93.93
PF11864464 DUF3384: Domain of unknown function (DUF3384); Int 93.84
KOG22741005 consensus Predicted importin 9 [Intracellular traf 93.74
PF1275597 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region 93.71
KOG12401431 consensus Protein kinase containing WD40 repeats [ 93.46
KOG1078865 consensus Vesicle coat complex COPI, gamma subunit 93.35
PF12717178 Cnd1: non-SMC mitotic condensation complex subunit 93.21
KOG2973353 consensus Uncharacterized conserved protein [Funct 92.85
COG5096757 Vesicle coat complex, various subunits [Intracellu 92.76
KOG15171387 consensus Guanine nucleotide binding protein MIP1 92.69
PF0298531 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re 92.68
COG5096757 Vesicle coat complex, various subunits [Intracellu 92.6
PF11698119 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011 92.39
KOG4535728 consensus HEAT and armadillo repeat-containing pro 92.23
PF05918556 API5: Apoptosis inhibitory protein 5 (API5); Inter 92.15
KOG09151702 consensus Uncharacterized conserved protein [Funct 92.15
KOG2956516 consensus CLIP-associating protein [General functi 92.12
KOG15171387 consensus Guanine nucleotide binding protein MIP1 91.99
COG1413335 FOG: HEAT repeat [Energy production and conversion 91.92
KOG2137700 consensus Protein kinase [Signal transduction mech 91.79
PF06371187 Drf_GBD: Diaphanous GTPase-binding Domain; InterPr 91.73
PF12348228 CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi 91.55
KOG2956516 consensus CLIP-associating protein [General functi 91.5
KOG4535728 consensus HEAT and armadillo repeat-containing pro 91.36
COG5240898 SEC21 Vesicle coat complex COPI, gamma subunit [In 91.16
KOG2137700 consensus Protein kinase [Signal transduction mech 91.1
PF09759102 Atx10homo_assoc: Spinocerebellar ataxia type 10 pr 91.02
KOG09151702 consensus Uncharacterized conserved protein [Funct 90.87
KOG12481176 consensus Uncharacterized conserved protein [Funct 90.71
PF0298531 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re 90.66
PF11865160 DUF3385: Domain of unknown function (DUF3385); Int 90.63
KOG19671030 consensus DNA repair/transcription protein Mms19 [ 90.6
KOG04141251 consensus Chromosome condensation complex Condensi 90.47
KOG0211759 consensus Protein phosphatase 2A regulatory subuni 90.36
PF10165446 Ric8: Guanine nucleotide exchange factor synembryn 90.08
KOG1078865 consensus Vesicle coat complex COPI, gamma subunit 89.64
PF09759102 Atx10homo_assoc: Spinocerebellar ataxia type 10 pr 89.59
KOG3665699 consensus ZYG-1-like serine/threonine protein kina 89.4
KOG1240 1431 consensus Protein kinase containing WD40 repeats [ 89.3
KOG1077938 consensus Vesicle coat complex AP-2, alpha subunit 89.23
PF12717178 Cnd1: non-SMC mitotic condensation complex subunit 89.21
KOG19431133 consensus Beta-tubulin folding cofactor D [Posttra 89.07
PF14664371 RICTOR_N: Rapamycin-insensitive companion of mTOR, 88.84
PF08569335 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro 88.51
KOG1820815 consensus Microtubule-associated protein [Cytoskel 88.2
PF11841160 DUF3361: Domain of unknown function (DUF3361) 88.18
KOG1077938 consensus Vesicle coat complex AP-2, alpha subunit 88.18
PF07814361 WAPL: Wings apart-like protein regulation of heter 88.04
COG5369743 Uncharacterized conserved protein [Function unknow 87.97
PF1275597 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region 87.66
PF1036392 DUF2435: Protein of unknown function (DUF2435) 87.6
PF12719298 Cnd3: Nuclear condensing complex subunits, C-term 87.45
KOG19911010 consensus Nuclear transport receptor RANBP7/RANBP8 87.38
PF12231372 Rif1_N: Rap1-interacting factor 1 N terminal; Inte 87.1
KOG2259823 consensus Uncharacterized conserved protein [Funct 86.97
PF05918556 API5: Apoptosis inhibitory protein 5 (API5); Inter 86.4
KOG2259823 consensus Uncharacterized conserved protein [Funct 86.23
KOG1058948 consensus Vesicle coat complex COPI, beta subunit 84.93
KOG19431133 consensus Beta-tubulin folding cofactor D [Posttra 84.68
KOG2611698 consensus Neurochondrin/leucine-rich protein (Neur 83.76
PF1466873 RICTOR_V: Rapamycin-insensitive companion of mTOR, 82.21
PF12530234 DUF3730: Protein of unknown function (DUF3730) ; I 81.91
KOG2973353 consensus Uncharacterized conserved protein [Funct 81.36
PF11841160 DUF3361: Domain of unknown function (DUF3361) 80.94
KOG0211759 consensus Protein phosphatase 2A regulatory subuni 80.39
COG5240898 SEC21 Vesicle coat complex COPI, gamma subunit [In 80.24
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
Probab=100.00  E-value=8.4e-101  Score=888.59  Aligned_cols=806  Identities=33%  Similarity=0.460  Sum_probs=629.4

Q ss_pred             CCcccCCcccccccCCCccccccccCCCCCCC---CCcccccccCCCC----CCCCCCCCCCCCCccccCCcCccccccc
Q 001429            1 MGNRGQKRMEMAVDLPDDKRACSSLDFRPSTS---NSSVQTHLNSTNS----TPETHHNDMDTSSSASASSRSEEEPEKD   73 (1079)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~   73 (1079)
                      |...++++.+.+.+.++|++.|++..+|+.++   ..++..+.+.++.    ++. ...++|+++....++..++- ...
T Consensus        34 ~~~~~a~~~s~~~ss~a~s~~ssSs~~~sasS~~d~~~~~~t~sdSsp~gg~G~~-~~~ngs~~~~~e~~sgl~~r-~aa  111 (1051)
T KOG0168|consen   34 ATGAVAGESSYTPSSDADSHSSSSSASRSASSGEDDNNVYATESDSSPLGGYGPH-NTQNGSTSSTNEHGSGLGRR-HAA  111 (1051)
T ss_pred             cccccccccccccccccccCccccccccccccccccccccccccCCCCCCCCCCC-CCCCCCcccccCcCccccch-hhh
Confidence            45678999999999999999999999999998   3345444443222    111 12566666554333333210 011


Q ss_pred             cCCC-----CCCCCCCCch--------------------hhhHHHHHHHhcCCCchhHHHHHHHhccCCChHHHHHHHHH
Q 001429           74 AGYG-----SCDSDDAEPR--------------------HRGLRELQRRRSSSDHGKLRSILACLSEDTDPSRHITSLTE  128 (1079)
Q Consensus        74 ~~~~-----~~~~~~~~~~--------------------~~~l~~~~r~l~~~~~~~l~~lv~~L~s~~d~~~ql~Al~~  128 (1079)
                      +++|     +.|++|-+..                    +.-+|-+.|+++++.++++++|+.+|++..||+.|++|+.+
T Consensus       112 ~a~g~~~~~e~dseDs~~grl~~~~e~~~l~qhl~g~lgprv~~ll~rt~~~sasSk~kkLL~gL~~~~Des~Qleal~E  191 (1051)
T KOG0168|consen  112 AAVGSNPLHESDSEDSEAGRLQALLEARGLPQHLFGRLGPRVLQLLHRTIGSSASSKAKKLLQGLQAESDESQQLEALTE  191 (1051)
T ss_pred             hhccCCCCCCccccccchhhhhhhhhccccCcccccccchhHHHHhhhcccccchHHHHHHHHhccccCChHHHHHHHHH
Confidence            1222     2222222211                    11244456666688899999999999998899999999999


Q ss_pred             HHHHHhccCCCchhhhhccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhHHHhCCChHHHHHHhhcCCCHHH
Q 001429          129 LCEVLSFAMEDSLSSMMADSLSPVLVKLARHETNPDIMLLAVRAITYLCDIFPRSSGLLVRHDAVPALCQRLKAIEYLDV  208 (1079)
Q Consensus       129 L~~lLs~~~~~~~~~~~~~g~Vp~LV~lL~~~~~~elq~~A~~aLtNIa~~~p~~~~~VV~~GaIp~Lv~kLl~~~~~dl  208 (1079)
                      ||++|+|+|++++.+|+...+||+||.||++++|+|||++||||||||+++.|+....||+++|||+|++||+.|+|+||
T Consensus       192 lce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~IeyiDv  271 (1051)
T KOG0168|consen  192 LCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLTIEYIDV  271 (1051)
T ss_pred             HHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhhhhhhHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhccCCcchhccCcccchhhccccCChHHHHHHHHHHHHhhcCCCCCchhhhhccHHHHHHhhccCCHHH
Q 001429          209 AEQCLQALEKISRDQPHACLEGGAIMAALTYIDFFSTSIQRVALSTVANICKKLPSECPSHLMEAVPILSNLLQYEDRQL  288 (1079)
Q Consensus       209 ~Eqal~aL~nIs~d~~~~Il~~G~L~~LL~lLd~~~~~vqr~A~~~lsNlc~~~~~~~~~~v~~vlP~L~~LL~~~D~~V  288 (1079)
                      +||++.||++|+++++.+|+++|+|.++|+|||||++++||.|+.+++|||...+.+.|..|.+++|.|.++|++.|.++
T Consensus       272 AEQ~LqALE~iSR~H~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~f~~v~ealPlL~~lLs~~D~k~  351 (1051)
T KOG0168|consen  272 AEQSLQALEKISRRHPKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDEFHFVMEALPLLTPLLSYQDKKP  351 (1051)
T ss_pred             HHHHHHHHHHHHhhccHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhhccchh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhccCCCHHHHHHHHhCCchHHHHHhhcCCCCCCCCccHHHHHHHHHHHHhcCCC--------CChHHH
Q 001429          289 VESVAICLIKIAEQLSQSSQMLDEVCSHGLINQTTHLLNLNSRTTLSQPIYYGLIGLLVKISSGSI--------LNIGSV  360 (1079)
Q Consensus       289 ~~~A~~als~I~~~~~~~~e~i~~lv~~gll~~Lv~LL~~~~~~~~~~~i~~~alr~L~nlas~s~--------~gi~~~  360 (1079)
                      ++.+|.|+.+|+++|.|.++.++.|++.|+|.++.+||... ++.++..+++..+|+|..+|++++        .||.++
T Consensus       352 ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt-~t~Ls~~~~~~vIrmls~msS~~pl~~~tl~k~~I~~~  430 (1051)
T KOG0168|consen  352 IESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVT-PTILSNGTYTGVIRMLSLMSSGSPLLFRTLLKLDIADT  430 (1051)
T ss_pred             HHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcC-cccccccchhHHHHHHHHHccCChHHHHHHHHhhHHHH
Confidence            99999999999999999999999999999999999999876 677899999999999999999999        899999


Q ss_pred             HHHhhccCCCCccchhhhhccCChHHHHHHHHHhhcccccccCcc-----------------------------------
Q 001429          361 LKDILSTYDLSHGMSSPHMVDGHCNQVHEVLKLLNELLPTSVGDQ-----------------------------------  405 (1079)
Q Consensus       361 L~~lL~~~~~e~~w~lsni~ag~~~qi~~vi~li~~LlP~l~~~~-----------------------------------  405 (1079)
                      |..+|.++.+.++......+.+.+.++.+++.++.+|||+++...                                   
T Consensus       431 L~~il~g~s~s~nas~~~~l~r~Pnel~e~~sl~~eLlp~~p~e~i~~~~~~~~~~~~n~~~~~~~~~~d~~~s~~~~~~  510 (1051)
T KOG0168|consen  431 LKRILQGYSKSANASLHELLSRSPNELYELTSLIIELLPCLPVEGIFAVDCSLIYEIVNLADELLWQWRDDRGSWHTYTN  510 (1051)
T ss_pred             HHHHHhccCcCcccccccccccCcHHHHHHHHHHheeecCCcccceeehhhhhhcccccccccccccCccccccccccch
Confidence            999999999999888888888989999999999999999999850                                   


Q ss_pred             -----------ch---------hhccccchhcccChHHHHHHHHhHHHHHHHHHhccCcHHHHHHHHHHHHHhhccCCHH
Q 001429          406 -----------CV---------QLVLDKQSFLVDRPDLLQNFGMDILPMLIQVVNSGANIFVCYGCLSVINKLVYLSKSD  465 (1079)
Q Consensus       406 -----------~~---------~~~~~r~~~l~~~p~~~~~f~~~llp~Li~v~~ss~~~~VR~~~l~ai~~iv~~~~~~  465 (1079)
                                 +|         -..++|+.+++++||.++.|++.|||+|++||+++++++||++||.||+|++||++++
T Consensus       511 ~~~ri~~q~~~~~~t~~~~~dkl~~~~r~~~l~nqpel~q~F~~~llpVLveVYsSsA~~~VR~kcL~Ailrlvy~s~se  590 (1051)
T KOG0168|consen  511 IDSRIIEQINEDTGTSRKQQDKLNGSAREGLLKNQPELLQSFGKDLLPVLVEVYSSSANPDVRYKCLSAILRLVYFSNSE  590 (1051)
T ss_pred             hhhhhhhhhccCcccchhhhhhcCCchhhhhhhcCHHHHHHHHHHHHHHHHHHHhccCCchhhHHHHHHHHHHHhhCCHH
Confidence                       00         0136678889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCchHHHhhhhccCChhHHHHHHHHHHHHHHhhhHHHHHHHHHhCHHHHHHHhcCCCccCC-CCCCCCCCCC
Q 001429          466 MLIELLKSANIPSFLAGVFTRKDHHVLILALEIAEMILQKLSDTFLNSFVKEGVFFAIDALLTPEKCSQ-LFPAFSGIQL  544 (1079)
Q Consensus       466 ~L~~ll~~~~i~s~La~iL~~~d~~~l~~aLq~~e~Ll~k~p~~~~~~f~rEGv~~~I~~L~~~~~~~~-~~~~~~~~~~  544 (1079)
                      .|..++++.+++|++|+||+++|+++|++|||++|+||+|+||+|.+.|+||||||+|++|........ ++++.....+
T Consensus       591 li~slLk~~~vSS~lAG~lsskD~~vlVgALQvAEiLmeKlpd~F~~~F~REGV~~~v~~L~~~~~~~~~~pdk~~n~~g  670 (1051)
T KOG0168|consen  591 LIGSLLKNTNVSSHLAGMLSSKDLTVLVGALQVAEILMEKLPDTFSPSFRREGVFHAVKQLSVDSNPIDANPDKANNENG  670 (1051)
T ss_pred             HHHHHHhcchHHHHHHhhhhcCCCeeEeehHHHHHHHHHHhHHHhhhhHhhhhHHHHHHHHhccCCccccCCCcccCCCC
Confidence            999999999999999999999999999999999999999999999999999999999999987443221 1111111122


Q ss_pred             CCCCCccccCcccccccc---CccCCC--CCC--CCccccccc----cchHHHHHHHHHHHHhhcCCCccCCcchhhHHH
Q 001429          545 CPSSSQKCAGREVLRCLC---YAFDTG--LSS--SASEKQSCK----LDKDSVHNLAKSIITKYFSPELFGSDKGLTDIL  613 (1079)
Q Consensus       545 ~~~~~~~~~~~~~~~~~~---~~~d~~--~~s--~~~~~~~~~----~~k~~i~~~Ar~~~~~y~~~~~~~~~~~~~~~L  613 (1079)
                      +.++++.........|.+   .+.+++  .|+  +.+ ..+.|    +.+..+..+||.+..+||...   .+.+.++.+
T Consensus       671 S~~s~~~~~~ss~~~~~~~~see~~~pslt~~~~~~s-~~~pk~s~~l~R~~~~~~ak~~~p~~~p~~---~~~~~~d~~  746 (1051)
T KOG0168|consen  671 SADSEEGDSSSSITECDEHQSEELGYPSLTHSEQPDS-VKPPKISDHLLRTRSPKRAKNFGPKYFPSR---LDQGVTDQL  746 (1051)
T ss_pred             ccccCCCccccccccccccchhccCCcccccccCCCc-cCCchhHHHHHHhhhhhhhhccCCCCCCch---hhhhhhHhh
Confidence            333333332222222222   233333  111  222 11212    223455566777888888752   356788889


Q ss_pred             HHHHHHHHHHHhhhhccccccccccCHHH--HHHHHHHHHHHhcCCCCcCceehhhhchHHHHHHHhccCcccccccccc
Q 001429          614 QDLRSFSAALTDLMNVCTDNEAHARDEEK--FYCILHQIMEKLNGREPVSTFEFIESGIVKSLVTYLTNGLYLRDNAELH  691 (1079)
Q Consensus       614 ~~L~~l~~~L~~~~~~~~~~~~~~~~~e~--~~~~l~~l~~~l~~~~~ISsFEll~SGLV~sLl~~ls~~~~~~~~~~~~  691 (1079)
                      ..++++...+......... ...+.+++.  |..+|..++.++.+++.||+|||.++|+++++.+|++++.+..+....-
T Consensus       747 ~~~knl~s~~s~~l~~~np-~~~gk~e~~~f~g~~~s~~~~~l~g~~~vS~~~l~~~~~~~sisnr~s~~~~sre~~~k~  825 (1051)
T KOG0168|consen  747 ANLKNLHSILSSFLASLNP-ATWGKTEEQPFWGNIWSVLKERLAGDFDVSGFELTEAGVADSISNRESSGTWSREQAAKL  825 (1051)
T ss_pred             hhhhhhcchhhhhhcccCC-CCCCcccccccccchhhhhhhhhcCCcccchhhhhHHHHHHHHHhhhhcchhhHHHHHHH
Confidence            9999998877665533221 122233444  8899999999999999999999999999999999999988765421000


Q ss_pred             CCCchhHHHHHHHHHHHHhhcCCCCCCCCC--------------------------------------------------
Q 001429          692 IPHSDLFVVEKRFEVLARLLLPYSDNLSED--------------------------------------------------  721 (1079)
Q Consensus       692 ~~~~~~~~~~~Rl~~F~~~f~~~~~~~~~~--------------------------------------------------  721 (1079)
                      ....+..+..+++++|.+++..-.......                                                  
T Consensus       826 ~~~~~e~e~~r~l~vl~~v~t~l~~~ng~v~~~~~~i~~lqssLs~~e~~p~vlsh~~~~kn~~~~lsSg~t~~s~~~i~  905 (1051)
T KOG0168|consen  826 VLRYFEQEILRFLNVLQEVLTRLLWLNGSVVDCGLLIQKLQSSLSSLEKFPFVLSHSGSKKNILAYLSSGETILSVPCIR  905 (1051)
T ss_pred             hhcchhhhHHHHHHHHHHHHHHHHhhcCccCcHHHHHHHHHHHHHhhhcCceEecCchhhhhhhhhcccCcchhhhHHHH
Confidence            011122222333344333321100000111                                                  


Q ss_pred             ----------------------------CcHHHHHHHHHHHhhhccccceEeccCCccCCCCCCCCCCccccCcceEEEE
Q 001429          722 ----------------------------SPVSVLIQKLQSALSSLENFPVILSHSFKLRSSYATVPYGRCIAHPCLRVRF  773 (1079)
Q Consensus       722 ----------------------------~pl~~LV~KLq~aLsr~E~FpV~~~~~~~~~~~~~~~~~g~s~L~kqlklrL  773 (1079)
                                                  .|+..+|+|...||.++|+|||..++.|...++++...+-.-+.++|+|+++
T Consensus       906 ~~~fl~~f~~~ple~~~~~~~~v~~l~~~~~~a~~~~~~~cl~~m~~~~~k~~d~p~~~~~r~~~~s~~~~n~~dlk~~~  985 (1051)
T KOG0168|consen  906 LRTFLHVFLRLPLEPMLQPNVQVPPLTSSPAEADVEKENNCLDQMEQVPVKVHDFPAGTGGRGSQFSTSFFNTHDLKCLL  985 (1051)
T ss_pred             HHHHHHHHhcCCchhhccccccCCCccccchhhhhhcccCCcchhhcCCCccccccCcCCcccchhhhheeecccccCcc
Confidence                                        2445555555555555555555555555443332221122226899999999


Q ss_pred             EeCCCCccccCCCCCeeeecccccHHHHHhhhhhhhhhccC
Q 001429          774 VRGDGETCLSDFSEDLLTVDPFSSLEAIEGYLWPKVTIKES  814 (1079)
Q Consensus       774 ~r~~d~~~l~~~~~~~VsIh~iAT~~aLe~yL~pRv~~~~~  814 (1079)
                      ++|+++++.++|+|+.|+|+|.+-++++++|+..|.+...+
T Consensus       986 ~~h~~~~~~kq~kG~~~~iep~~~~~g~q~~~~~~~~~~~~ 1026 (1051)
T KOG0168|consen  986 QRHPTCKNCKQLKGGNVKIEPAAEVQGIQRRSVVRKRGFAR 1026 (1051)
T ss_pred             ccCccccchhhhcCCCcccChhhhchhhHHHHHHhhccccc
Confidence            99999999999999999999999999999999999876544

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] Back     alignment and domain information
>PLN03200 cellulose synthase-interactive protein; Provisional Back     alignment and domain information
>PLN03200 cellulose synthase-interactive protein; Provisional Back     alignment and domain information
>KOG0170 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF05804 KAP: Kinesin-associated protein (KAP) Back     alignment and domain information
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells Back     alignment and domain information
>PF05804 KAP: Kinesin-associated protein (KAP) Back     alignment and domain information
>cd00020 ARM Armadillo/beta-catenin-like repeats Back     alignment and domain information
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function Back     alignment and domain information
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd00020 ARM Armadillo/beta-catenin-like repeats Back     alignment and domain information
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells Back     alignment and domain information
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures] Back     alignment and domain information
>KOG4199 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PRK09687 putative lyase; Provisional Back     alignment and domain information
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function Back     alignment and domain information
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures] Back     alignment and domain information
>PTZ00429 beta-adaptin; Provisional Back     alignment and domain information
>KOG4199 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PRK09687 putative lyase; Provisional Back     alignment and domain information
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional Back     alignment and domain information
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PTZ00429 beta-adaptin; Provisional Back     alignment and domain information
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional Back     alignment and domain information
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms] Back     alignment and domain information
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only] Back     alignment and domain information
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms] Back     alignment and domain information
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane Back     alignment and domain information
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless Back     alignment and domain information
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments Back     alignment and domain information
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] Back     alignment and domain information
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins Back     alignment and domain information
>PF01749 IBB: Importin beta binding domain; InterPro: IPR002652 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane Back     alignment and domain information
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless Back     alignment and domain information
>PF05536 Neurochondrin: Neurochondrin Back     alignment and domain information
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane Back     alignment and domain information
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion] Back     alignment and domain information
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments Back     alignment and domain information
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only] Back     alignment and domain information
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A Back     alignment and domain information
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B Back     alignment and domain information
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] Back     alignment and domain information
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures] Back     alignment and domain information
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A Back     alignment and domain information
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway [] Back     alignment and domain information
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] Back     alignment and domain information
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B Back     alignment and domain information
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>smart00185 ARM Armadillo/beta-catenin-like repeats Back     alignment and domain information
>PF05536 Neurochondrin: Neurochondrin Back     alignment and domain information
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] Back     alignment and domain information
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure] Back     alignment and domain information
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] Back     alignment and domain information
>TIGR02270 conserved hypothetical protein Back     alignment and domain information
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>TIGR02270 conserved hypothetical protein Back     alignment and domain information
>smart00185 ARM Armadillo/beta-catenin-like repeats Back     alignment and domain information
>KOG0212 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion] Back     alignment and domain information
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] Back     alignment and domain information
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] Back     alignment and domain information
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term Back     alignment and domain information
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown] Back     alignment and domain information
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion] Back     alignment and domain information
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4 Back     alignment and domain information
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins Back     alignment and domain information
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG1413 FOG: HEAT repeat [Energy production and conversion] Back     alignment and domain information
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 [] Back     alignment and domain information
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures] Back     alignment and domain information
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0212 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown] Back     alignment and domain information
>COG5369 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised Back     alignment and domain information
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure] Back     alignment and domain information
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region Back     alignment and domain information
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] Back     alignment and domain information
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 Back     alignment and domain information
>KOG2973 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] Back     alignment and domain information
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] Back     alignment and domain information
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane Back     alignment and domain information
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only] Back     alignment and domain information
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms Back     alignment and domain information
>KOG0915 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG2956 consensus CLIP-associating protein [General function prediction only] Back     alignment and domain information
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>COG1413 FOG: HEAT repeat [Energy production and conversion] Back     alignment and domain information
>KOG2137 consensus Protein kinase [Signal transduction mechanisms] Back     alignment and domain information
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division [] Back     alignment and domain information
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] Back     alignment and domain information
>KOG2956 consensus CLIP-associating protein [General function prediction only] Back     alignment and domain information
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only] Back     alignment and domain information
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG2137 consensus Protein kinase [Signal transduction mechanisms] Back     alignment and domain information
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10 Back     alignment and domain information
>KOG0915 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1248 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] Back     alignment and domain information
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length Back     alignment and domain information
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription] Back     alignment and domain information
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms] Back     alignment and domain information
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway [] Back     alignment and domain information
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10 Back     alignment and domain information
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] Back     alignment and domain information
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] Back     alignment and domain information
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 Back     alignment and domain information
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term Back     alignment and domain information
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis Back     alignment and domain information
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton] Back     alignment and domain information
>PF11841 DUF3361: Domain of unknown function (DUF3361) Back     alignment and domain information
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D Back     alignment and domain information
>COG5369 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region Back     alignment and domain information
>PF10363 DUF2435: Protein of unknown function (DUF2435) Back     alignment and domain information
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain Back     alignment and domain information
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length Back     alignment and domain information
>KOG2259 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms Back     alignment and domain information
>KOG2259 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown] Back     alignment and domain information
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5 Back     alignment and domain information
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length Back     alignment and domain information
>KOG2973 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF11841 DUF3361: Domain of unknown function (DUF3361) Back     alignment and domain information
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms] Back     alignment and domain information
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1079
2yns_A490 Rimp_alpha_b54nls Length = 490 2e-05
4b8j_A528 Rimp_alpha1a Length = 528 3e-05
3fex_C467 Crystal Structure Of The Cbc-Importin Alpha Complex 2e-04
>pdb|2YNS|A Chain A, Rimp_alpha_b54nls Length = 490 Back     alignment and structure 
Iteration: 1

 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/176 (22%), Positives = 75/176 (42%), Gaps = 5/176 (2%)
Query: 118 DPSRHITSLTELCEVLSFXXXXXXXXXXXXXXXPVLVKLARHETNPDIMLLAVRAITYLC 177
           D +  + + T+  ++LS                P  V+    E  P +   A  A+T + 
Sbjct: 49  DNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIA 108
Query: 178 DIFPRSSGLLVRHDAVPALCQRLKAIEYLDVAEQCLQALEKISRDQPHA---CLEGGAIM 234
                ++ +++ H AVP   + L +    DV EQ + AL  ++ D P      L  GA++
Sbjct: 109 SGTSENTKVVIDHGAVPIFVKLLGS-SSDDVREQAVWALGNVAGDSPKCRDLVLANGALL 167
Query: 235 AALTYIDFFST-SIQRVALSTVANICKKLPSECPSHLMEAVPILSNLLQYEDRQLV 289
             L  ++  +  S+ R A  T++N C+  P         A+P L+ L+   D +++
Sbjct: 168 PLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHSNDEEVL 223
>pdb|4B8J|A Chain A, Rimp_alpha1a Length = 528 Back     alignment and structure
>pdb|3FEX|C Chain C, Crystal Structure Of The Cbc-Importin Alpha Complex. Length = 467 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1079
3b2a_A265 TON_1937, putative uncharacterized protein; heat-r 1e-36
1wa5_B530 Importin alpha subunit; nuclear transport/complex, 3e-36
3oqs_A510 Importin subunit alpha-2; importin alpha, karyophe 9e-22
3oqs_A510 Importin subunit alpha-2; importin alpha, karyophe 2e-09
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 2e-16
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-14
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-13
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-11
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-08
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 2e-12
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 1e-06
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 4e-06
1xqr_A296 HSPBP1 protein; armadillo repeat, superhelical twi 5e-11
1xqr_A296 HSPBP1 protein; armadillo repeat, superhelical twi 4e-08
2z6g_A780 B-catenin; FULL-length, beta-catenin, cell adhesio 2e-10
2z6g_A780 B-catenin; FULL-length, beta-catenin, cell adhesio 6e-08
2z6g_A780 B-catenin; FULL-length, beta-catenin, cell adhesio 7e-07
2z6g_A780 B-catenin; FULL-length, beta-catenin, cell adhesio 8e-06
2z6h_A644 Catenin beta-1, beta-catenin; C-terminal domain, a 6e-10
2z6h_A644 Catenin beta-1, beta-catenin; C-terminal domain, a 4e-06
2z6h_A644 Catenin beta-1, beta-catenin; C-terminal domain, a 1e-04
2z6h_A644 Catenin beta-1, beta-catenin; C-terminal domain, a 5e-04
2z6h_A644 Catenin beta-1, beta-catenin; C-terminal domain, a 8e-04
1jdh_A529 Beta-catenin; beta-catenin, protein-protein comple 3e-09
1jdh_A529 Beta-catenin; beta-catenin, protein-protein comple 3e-08
1jdh_A529 Beta-catenin; beta-catenin, protein-protein comple 2e-06
1jdh_A529 Beta-catenin; beta-catenin, protein-protein comple 1e-05
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 4e-09
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 1e-06
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 3e-05
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 8e-04
3now_A810 UNC-45 protein, SD10334P; armadillo repeat, HSP90, 1e-05
3now_A810 UNC-45 protein, SD10334P; armadillo repeat, HSP90, 6e-05
3nmw_A354 APC variant protein; ARMADIILO repeats domain, cel 2e-05
3nmw_A354 APC variant protein; ARMADIILO repeats domain, cel 3e-05
3nmw_A354 APC variant protein; ARMADIILO repeats domain, cel 3e-04
3nmz_A458 APC variant protein; protein-protein complex, arma 7e-05
3nmz_A458 APC variant protein; protein-protein complex, arma 1e-04
1xm9_A457 Plakophilin 1; armadillo repeat, cell adhesion; 2. 4e-04
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} Length = 265 Back     alignment and structure
 Score =  138 bits (348), Expect = 1e-36
 Identities = 40/244 (16%), Positives = 86/244 (35%), Gaps = 18/244 (7%)

Query: 89  RGLRELQRRRSSSDHGKLRSILACLSEDTDPSRHITSLTELCEVLSFAMEDSLSSMMADS 148
              + L     + +  +   ++  L+ + D +  + +   L E+L  A  D L  M+ + 
Sbjct: 17  LSWQILDAVSLALEDKRALFLILELAGEDDETTRLRAFVALGEILKRADSD-LRMMVLER 75

Query: 149 LSPVLVKLARHETNPDIMLLAVRAITYLCDIFPRSSGLLVRHDAVPALCQRLKA------ 202
              V +     E N  + + A+RA+ YL    P  S   ++  A   L   L++      
Sbjct: 76  HLDVFINALSQE-NEKVTIKALRALGYLVKDVPMGSKTFLK--AAKTLVSLLESPDDMMR 132

Query: 203 IEYLDVAEQC------LQALEKISRDQPHACLEGGAIMAALTYIDFFSTSIQRVALSTVA 256
           IE +DV  +             I+       L        L +++  ++S     L+ + 
Sbjct: 133 IETIDVLSKLQPLEDSKLVRTYINELVVSPDLYTKVAGFCL-FLNMLNSSADSGHLTLIL 191

Query: 257 NICKKLPSECPSHLME-AVPILSNLLQYEDRQLVESVAICLIKIAEQLSQSSQMLDEVCS 315
           +    L       ++E A+ +L   L +   + V+   + + +I + L            
Sbjct: 192 DEIPSLLQNDNEFIVELALDVLEKALSFPLLENVKIELLKISRIVDGLVYREGAPIIRLK 251

Query: 316 HGLI 319
              +
Sbjct: 252 AKKV 255
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 Back     alignment and structure
>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 Back     alignment and structure
>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 Back     alignment and structure
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296 Back     alignment and structure
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296 Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 Back     alignment and structure
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810 Back     alignment and structure
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810 Back     alignment and structure
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354 Back     alignment and structure
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354 Back     alignment and structure
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354 Back     alignment and structure
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458 Back     alignment and structure
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458 Back     alignment and structure
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 1079
d1wa5b_503 a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (S 2e-13
d1q1sc_434 a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus 4e-07
d1xm9a1457 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo 2e-06
d2vgla_584 a.118.1.10 (A:) Adaptin alpha C subunit N-terminal 1e-04
d2vgla_584 a.118.1.10 (A:) Adaptin alpha C subunit N-terminal 0.002
d1jdha_529 a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) 0.001
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 503 Back     information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 71.7 bits (174), Expect = 2e-13
 Identities = 64/427 (14%), Positives = 139/427 (32%), Gaps = 34/427 (7%)

Query: 80  DSDDAEPRHRGLRELQRRRSSSDHGKLRSILACLSEDTDPSRHITSLTELCEVLSFAMED 139
           D  D++          ++  S    +L  +   L+ D D    +++  +  ++LS     
Sbjct: 52  DGADSDEEDESSVSADQQFYSQLQQELPQMTQQLNSD-DMQEQLSATVKFRQILSREHRP 110

Query: 140 SLSSMMADSLSPVLVKLARHETNPDIMLLAVRAITYLCDIFPRSSGLLVRHDAVPALCQR 199
            +  ++   + P LV+  R      + L A  A+T +       + ++V  DAVP   Q 
Sbjct: 111 PIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQL 170

Query: 200 LKA--IEYLDVAEQCLQALEKISRDQPHACLEGGAIMAALTYIDFFSTSIQRVALSTVAN 257
           L    +E  + A   L  +   S D     L+  A+   L   +    S+ R A  T++N
Sbjct: 171 LYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSN 230

Query: 258 ICKKLPSECPSHLMEAVPILSNLLQYEDRQLVESVAICLIKIAEQLSQSSQMLDEVCSHG 317
           +C+    +           L  L +       E++      I+       + +  V    
Sbjct: 231 LCRG--KKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVR 288

Query: 318 LINQTTHLLNLNSRTTLSQPIYYGLIGLLVKISSGSILNIGSVLKDILSTYDLSHGMSSP 377
           +  +   LL+  S    +  +                              ++  G    
Sbjct: 289 IPKRLVELLSHESTLVQTPALRA--------------------------VGNIVTGNDLQ 322

Query: 378 HMVDGHCNQVHEVLKLLNELLPTSVGDQCVQLVLDKQSFLVDRPDLLQNFGMDILPMLIQ 437
             V  +   +  +  LL+        + C  +             ++     +++P L++
Sbjct: 323 TQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVID---ANLIPPLVK 379

Query: 438 VVNSGANIFVCYGCLSVINKLVYLSKSDMLIELLKSANIPSFLAGVFTRKDHHVLILALE 497
           ++           C ++ N      +   +I  L S      L  +    D+ ++ + L+
Sbjct: 380 LLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLD 439

Query: 498 IAEMILQ 504
             E IL+
Sbjct: 440 ALENILK 446
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434 Back     information, alignment and structure
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457 Back     information, alignment and structure
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1079
d1wa5b_503 Karyopherin alpha {Baker's yeast (Saccharomyces ce 100.0
d1q1sc_434 Importin alpha {Mouse (Mus musculus) [TaxId: 10090 100.0
d1wa5b_503 Karyopherin alpha {Baker's yeast (Saccharomyces ce 100.0
d1q1sc_434 Importin alpha {Mouse (Mus musculus) [TaxId: 10090 100.0
d1jdha_529 beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} 99.98
d1jdha_529 beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} 99.97
d1xm9a1457 Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} 99.93
d1xm9a1457 Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} 99.92
d1xqra1264 Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi 99.87
d1xqra1264 Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi 99.86
d2vglb_579 Adaptin beta subunit N-terminal fragment {Human (H 99.72
d2vglb_579 Adaptin beta subunit N-terminal fragment {Human (H 99.61
d1u6gc_ 1207 Cullin-associated NEDD8-dissociated protein 1 (Tip 99.61
d1b3ua_588 Constant regulatory domain of protein phosphatase 99.6
d1b3ua_588 Constant regulatory domain of protein phosphatase 99.6
d1qbkb_888 Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 99.57
d1qbkb_888 Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 99.5
d1u6gc_ 1207 Cullin-associated NEDD8-dissociated protein 1 (Tip 99.36
d2bpta1861 Importin beta {Baker's yeast (Saccharomyces cerevi 99.23
d1oyza_276 Hypothetical protein YibA {Escherichia coli [TaxId 99.22
d2bpta1861 Importin beta {Baker's yeast (Saccharomyces cerevi 99.19
d2vgla_584 Adaptin alpha C subunit N-terminal fragment {Mouse 99.19
d1qgra_876 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 99.15
d1ibrb_458 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 99.1
d1ibrb_458 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 99.05
d1qgra_876 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 99.03
d2vgla_584 Adaptin alpha C subunit N-terminal fragment {Mouse 99.01
d1oyza_276 Hypothetical protein YibA {Escherichia coli [TaxId 98.66
d1te4a_111 MTH187 {Archaeon Methanobacterium thermoautotrophi 97.95
d1te4a_111 MTH187 {Archaeon Methanobacterium thermoautotrophi 97.65
d1ho8a_477 Regulatory subunit H of the V-type ATPase {Baker's 97.44
d1ho8a_477 Regulatory subunit H of the V-type ATPase {Baker's 97.26
d1wa5c_959 Exportin Cse1p {Baker's yeast (Saccharomyces cerev 96.59
d1wa5c_959 Exportin Cse1p {Baker's yeast (Saccharomyces cerev 96.54
d1upka_330 Mo25 protein {Human (Homo sapiens) [TaxId: 9606]} 96.27
d1lsha1336 Lipovitellin-phosvitin complex, superhelical domai 89.02
d1lrva_233 Leucine-rich repeat variant {Azotobacter vinelandi 81.4
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=0  Score=356.39  Aligned_cols=455  Identities=20%  Similarity=0.243  Sum_probs=379.2

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             86567765434459776443554677888898742123457899988778987887755657767666432368899999
Q 001429            2 GNRGQKRMEMAVDLPDDKRACSSLDFRPSTSNSSVQTHLNSTNSTPETHHNDMDTSSSASASSRSEEEPEKDAGYGSCDS   81 (1079)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (1079)
                      +++||||.|..+|+|+.||++...|+|+.........   +    .+                  ++..       .. .
T Consensus        19 ~e~r~kR~~~~veiRk~kr~e~l~kkR~~~~~~~~~~---~----~~------------------~~~~-------~~-~   65 (503)
T d1wa5b_          19 DELRRRRDTQQVELRKAKRDEALAKRRNFIPPTDGAD---S----DE------------------EDES-------SV-S   65 (503)
T ss_dssp             -CCCCCTTSSCCCCSCCCCCSCCSCCCCC---------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC---C----CC------------------HHCC-------CC-C
T ss_conf             9999877788899838999999985338886666556---3----10------------------0001-------21-0


Q ss_pred             CCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCHHHHHHHHCCCC
Q ss_conf             99870021289999984289901399999982169994899999999999994368874113200495899997404799
Q 001429           82 DDAEPRHRGLRELQRRRSSSDHGKLRSILACLSEDTDPSRHITSLTELCEVLSFAMEDSLSSMMADSLSPVLVKLARHET  161 (1079)
Q Consensus        82 ~~~~~~~~~l~~~~r~l~~~~~~~l~~Ll~~L~s~~d~~~ql~Al~~L~~lLs~~~e~~l~~i~~~~~vp~LV~LL~~~~  161 (1079)
                      .+            ..........++.++..++++ |+..|+.|+..++++++..++++++.+...|++|.|+.+|+.+.
T Consensus        66 ~~------------~~~~~~~~~~l~~~~~~~~s~-~~~~~~~a~~~~r~~ls~~~~~~i~~ii~~g~i~~Lv~~l~~~~  132 (503)
T d1wa5b_          66 AD------------QQFYSQLQQELPQMTQQLNSD-DMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQ  132 (503)
T ss_dssp             ----------------------CCHHHHHHHHSCS-SHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTS
T ss_pred             HH------------HHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCHHHHHHHHCCCC
T ss_conf             35------------677778889999999986499-99999999999999974078843999998798499999871799


Q ss_pred             CHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCC---CCHHCCCCCCCHHH
Q ss_conf             989999999999996316995335887189938999986228999999999999989532699---54012472000000
Q 001429          162 NPDIMLLAVRAITYLCDIFPRSSGLLVRHDAVPALCQRLKAIEYLDVAEQCLQALEKISRDQP---HACLEGGAIMAALT  238 (1079)
Q Consensus       162 ~~eiq~~A~~aLtnI~~~~p~~~~~VV~~GaIp~Lv~kLl~~~~~dLaEqal~aL~nIs~d~~---~~Il~~g~L~~lL~  238 (1079)
                      +.++|..|+|+|+||+.+.+..+..+++.|++|.|+. ++.+++.+++++|+|+|+||+.+++   ..+++.|++++++.
T Consensus       133 ~~~iq~~a~~~L~ni~~~~~~~~~~~~~~g~i~~l~~-lL~s~~~~i~~~a~~~L~nia~~~~~~r~~l~~~~~~~~L~~  211 (503)
T d1wa5b_         133 PEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQ-LLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILG  211 (503)
T ss_dssp             CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHH-HHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHH-HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH
T ss_conf             9999999999999997498887799996787478999-855997158999999999985411899998874135563012


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHCCC-CCCCHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCC
Q ss_conf             013677579999999999750499-9996355512089999831167788999999999998730499978899998399
Q 001429          239 YIDFFSTSIQRVALSTVANICKKL-PSECPSHLMEAVPILSNLLQYEDRQLVESVAICLIKIAEQLSQSSQMLDEVCSHG  317 (1079)
Q Consensus       239 ~Ld~~~~~iqr~A~~~lsNlc~~~-~~~~~~~i~~~lP~L~~lL~~~D~~V~~~A~~als~I~~~~~~~~e~~e~ii~~g  317 (1079)
                      ++......+++.++|+++|+|++. +...+..+.+++|.|..++.+.|.+++.++||++++++.+   .++..+.+++.|
T Consensus       212 ll~~~~~~~~~~~~~~l~nl~~~~~~~~~~~~~~~~l~~l~~~l~~~d~~~~~~~~~~l~~l~~~---~~~~~~~~~~~~  288 (503)
T d1wa5b_         212 LFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDG---PQEAIQAVIDVR  288 (503)
T ss_dssp             GGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSS---CHHHHHHHHHTT
T ss_pred             HCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCC---CCHHHHHHHHHH
T ss_conf             04568889999999999998468742047999999999999872356389999999998753227---711110011223


Q ss_pred             CHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCC--------CCHHHHHHHHHCCCCC----CCCCHHHHHCCCCHH
Q ss_conf             4599998404899998881179999999999862799--------9907999996326998----853000000148967
Q 001429          318 LINQTTHLLNLNSRTTLSQPIYYGLIGLLVKISSGSI--------LNIGSVLKDILSTYDL----SHGMSSPHMVDGHCN  385 (1079)
Q Consensus       318 li~~Li~LL~~~~~~~~~~~~~~~alr~L~~las~s~--------~gi~~~L~~lL~~~~~----~~~~~lsni~~~~~~  385 (1079)
                      +++.++.++.+.     +..+..+++++|++++.+++        .|+++.|..++.+.+.    +++|+++|+++++.+
T Consensus       289 ~~~~l~~ll~~~-----~~~v~~~al~~l~nl~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~i~~~~~~~l~nl~~~~~~  363 (503)
T d1wa5b_         289 IPKRLVELLSHE-----STLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTE  363 (503)
T ss_dssp             CHHHHHHGGGCS-----CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred             HHHHHHHCCCCC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHH
T ss_conf             311101102578-----636445677777778778888787631234099999996399788899998778888614698


Q ss_pred             HHHHHHHHHHCCCCCCCCCCCHHHCCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCC--
Q ss_conf             999999996320566557610010001000002490899999976799999999306838999999999999610699--
Q 001429          386 QVHEVLKLLNELLPTSVGDQCVQLVLDKQSFLVDRPDLLQNFGMDILPMLIQVVNSGANIFVCYGCLSVINKLVYLSK--  463 (1079)
Q Consensus       386 qi~~ii~li~~LlP~l~~~~~t~~~~~r~~~l~~~p~~~~~~~~~llp~Li~iy~ss~~~~VR~~~l~ai~~iv~~~~--  463 (1079)
                      ++..+++  .                                  +++|.+++.+. +.+++|++++.|++.+++..+.  
T Consensus       364 ~~~~i~~--~----------------------------------~~l~~li~~l~-~~~~~v~~~a~~~l~nl~~~~~~~  406 (503)
T d1wa5b_         364 QIQAVID--A----------------------------------NLIPPLVKLLE-VAEYKTKKEACWAISNASSGGLQR  406 (503)
T ss_dssp             HHHHHHH--T----------------------------------TCHHHHHHHHH-HSCHHHHHHHHHHHHHHHHHTTTC
T ss_pred             HHHHHHH--C----------------------------------CCCCHHHHHCC-CCCHHHHHHHHHHHHHHHHCCCCC
T ss_conf             8899997--1----------------------------------46523677602-687368999999999997365354


Q ss_pred             HHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHCHHHHHHHHCCCCCCC
Q ss_conf             99999998507934788654126885699999999999998614----------79987799717899999722998668
Q 001429          464 SDMLIELLKSANIPSFLAGVFTRKDHHVLILALEIAEMILQKLS----------DTFLNSFVKEGVFFAIDALLTPEKCS  533 (1079)
Q Consensus       464 ~~~L~~ll~~~~i~s~La~iL~~~d~~~l~~aLq~~e~Ll~k~p----------~~~~~~f~rEGv~~~I~~L~~~~~~~  533 (1079)
                      ++.+..+++...+ ..|..+|...|..++..+|+++..|++...          +.|...|++.|++..|+.|..++   
T Consensus       407 ~~~~~~l~~~~~l-~~l~~~L~~~d~~~~~~~L~~l~~ll~~~~~~~~~~~~~~~~~~~~iee~g~~~~i~~Lq~~~---  482 (503)
T d1wa5b_         407 PDIIRYLVSQGCI-KPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNE---  482 (503)
T ss_dssp             THHHHHHHHTTCH-HHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCS---
T ss_pred             HHHHHHHHHCCCH-HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHCCC---
T ss_conf             8999999989769-999998659988999999999999999888775653023018999999887799999987699---


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCC
Q ss_conf             88988888888999876456743212246766889999875333342012789999999998314987
Q 001429          534 QLFPAFSGIQLCPSSSQKCAGREVLRCLCYAFDTGLSSSASEKQSCKLDKDSVHNLAKSIITKYFSPE  601 (1079)
Q Consensus       534 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~s~~s~~~~~~~~k~~i~~~Ar~l~~~y~~~~  601 (1079)
                                                                       ...|+..|..+.++||..+
T Consensus       483 -------------------------------------------------~~~i~~~A~~il~~~f~~~  501 (503)
T d1wa5b_         483 -------------------------------------------------NDKIYEKAYKIIETYFGEE  501 (503)
T ss_dssp             -------------------------------------------------CHHHHHHHHHHHHHHSSSC
T ss_pred             -------------------------------------------------CHHHHHHHHHHHHHHCCCC
T ss_conf             -------------------------------------------------8999999999999875876
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]} Back     information, alignment and structure
>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} Back     information, alignment and structure