Citrus Sinensis ID: 001439

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------108
Protein Sequence
MGGSKSKMVVMFVLLLIIFEGGWSEGCLNHERFALLQLKLFFIDPYNYLLDWVDDEGATDCCQWERVSCNNTMGRVVVLDLSQTHRGEYWYLNASLFTPFQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILSSLARLSSLTSLDLSANRLKGSIDIKGPKRLSRLNNLKVFDLSGNLFNNSILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQFATFNESSYEGNPFLCGPPLPICISPTTMPEASPSNEGDNNLIDMDIFFITFTTSYVIVIFGIVAVLYVNARWRRRWFYLVEMWTTSCYYFVIDNLIPTRFCH
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHccccccccccccccccccccccccccEEEccccccEEEEEccccccccccccccccccccccccEEEcccccccccccccHHHcccccccccEEEcccccccccccHHccccccccEEEcccccccccccccccccccccccccEEEccccccccccHHHccccccccEEEcccccccccccHHcccccccccEEEccccccccccccccccccccccEEEcccccccccccccccccccccccEEEccccccccccccccccccccccccEEEccccccccccccHHHHHcccccccEEEccccccccccccccccccccccccEEEcccccccccccccccccccccEEEccccccccccccccccccccccEEEcccccccccccHHHHcccccccEEEccccccEEEcccccccccccccccEEEccccccccccccccccccccccEEEcccccccccccHHHHHccccccEEEccccEEEEEccccccccccccEEEccccccEEEcccccccccccccEEEcccccccccccccccccccccEEEcccccccccccHHHHHccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEccccccEEEcccccccccccEEEccccccEEcccHHHHHccccccEEEcccccccccccHHHHccccccEEEccccEEEEcccccccccccccEEEcccccccccccHHHHHcccccccccccccccccccEEEcccccccccccEEEEEEEEEccEEEEEccccccccEEEEcccccccccccHHHHccccccccccccccccccccccccccccccEEccccccccccccHHHHcccccccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEHHHHHHHHHHHHHHHEEEEcccHHHHHHHHHHHHHcEEEEEEEEEEEcccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHccccccccccccccccccccccEEEEEEcccccEEEEEEccccccccccccccHHHcccccccEEEcccccccccccccccHHHccccccEEEEcccccccccccHHHccccccEEEEcccccccccccccccHHHccccccEEEEcccccccccccHHHcccccccEEEEccccccccccHHHHHccccccEEEccccccccccccHHHcccccccEEEEccccccccccccHHHccccccEEEEcccccccccccHHHcccHHHHHHHHHHcccccccccccccccccHHHccccHEEEEccccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEEccccccccccHHHHHccccccEEEcccccccccccHHHHccccccEEEEEccccccccccHHHccccccccEEEEEEcccccccccccHHHcccccccEEEcccccccccccHHHHHHcccccEEEcccccccccccHHHcccccccEEEEccccccccccHHHHHHcccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHHHccccccEEEcccccEEccccHHHHHcccccEEEEEEEccEEEccHHHHHcccccEEEccccEEEccccHHHHHcccccEEEccccccEEEccHHHccccccEEEEccccccccccccHccccccEEEEEccccccccccHHHHccccccEEEEcccccEEccccHHHHHcccccEEEEEEEccEEEccHHHHHcccccEEEccccEEEccccHHHcccHHHHHHcccccccccccccHcccccccccccccEEEEEEccccccccccHHHHHHccEEEcccccEEccccHHHHHcccccEEEEEEEccEEEccHHHHHcccccEEEccccEEEccccHHHHHcccccEEEccccccEEEccHHHHccccccHHHccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHccccccc
Coil and Loop (DISEMBL)
MGGSKSKMVVMFVLLLIIFeggwsegclnHERFALLQLKLFfidpynylldwvddegatdccqwervscnntmGRVVVLDlsqthrgeywylnaslftpfqqlesldlrdndiagcveneglerlsrlSNLKMLNLVGNLFNNSILSSLARLssltsldlsanrlkgsidikgpkrlsrlnnlkvfdlsgnlfnnSILSSLARLSSLRSLLLydnrlegsidvkefdslsnleeldmsyneidnfevpqacsglrklSYLHLLRVGIRDGSKLlqsmgsfpslntldlsynnftetvttttqgfphfksLKELYMDDARIALNTSFLQIIGesmpsiqylslsnssvsnnsrtldqglcplvhlqelhmadndlrgslpwclanmtslrildvssnqligsisssplihltsiedlilsdnhfqipisleplfnhsrlkifdaENNEINAEIIeshslttpnFQLQSLLLssgyrdgitfpkflynqhdleyVRLSHIKmneefpnwllenntklrQLSLvndslvgpfrlpihshkqlrlldvsknnfqghipleIGDILSRLTVFNIsmnaldgsipssfgnmnflqfldlsnnqltgeipehLAMGCVSLRSLALsnnnleghmfsrnfnLTNLIWLQLEgnhfvgeipqslskcsslqglflsnnslsgkiprwlgNLTVLRHIimpknhiegpiplefCQLRILQIldisdnnisgslpscydfvciEQVHLSKnmlhgqlkegtffnCLTLMILDLSynhlngnipdrvdgLSQLSYLILAHNnlegevpiQLCRLNQLQLldlsnnnlhghipscfdnttlherynngsslqpfetSFVImggmdvdpkkqiLESFDFTTKSItytyqgrvpsllsgldlscnrlighippqignltkIQTLnlshnnlagpipstfsnlrniesldlsynklswkipyqlVELNTLAVFSVAYNnlsgkipeRAAQFAtfnessyegnpflcgpplpicispttmpeaspsnegdnnlidmdIFFITFTTSYVIVIFGIVAVLYVNARWRRRWFYLVEMWTTSCYYFVidnliptrfch
Flexible Loop (DISEMBL)
MGGSKSKMVVMFVLLLIIFEGGWSEGCLNHERFALLQLKLFFIDPYNYLLDWVDDEGATDCCQWErvscnntmgRVVVLDLSQTHRGEYWYLNASLFTPFQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILSSLARLSSLTSldlsanrlkgsidikgpkrlsrlNNLKVFDLSGNLFNNSILSSLARLSSLRSLLLYDNRlegsidvkefdslSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTETVTtttqgfphFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSnnslsgkipRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQFATFNESSYEGNPFLCGPPLPICISPTTMPEASPSNEGDNNLIDMDIFFITFTTSYVIVIFGIVAVLYVNARWRRRWFYLVEMWTTSCYYFVIDNLIPTRFCH
Low Complexity Region (SEG)
MGGSKSKMVVMFVLLLIIFEGGWSEGCLNHERFALLQLKLFFIDPYNYLLDWVDDEGATDCCQWERVSCNNTMGRVVVLDLSQTHRGEYWYLNASLFTPFQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNsilsslarlssltsldlsANRLKGSIDIKGPKRLSRLNNLKVFDLSGNLFNNsilsslarlsslrslllYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFtetvttttQGFPHFKSLKELYMDDARIALNTSFLQIIGESMPSIQYlslsnssvsnnsRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVssnqligsisssPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDaenneinaeiieSHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVslrslalsnnnlEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIqlcrlnqlqlldlsnnnlHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQFATFNESSYEGNPFLCGPPLPICISPTTMPEASPSNEGDNNLIDMDIFFITFTTSYVIVIFGIVAVLYVNARWRRRWFYLVEMWTTSCYYFVIDNLIPTRFCH
Disordered region (IsUnstruct)
*******MVVMFVLLLIIFEGGWSEGCLNHERFALLQLKLFFIDPYNYLLDWVDDEGATDCCQWERVSCNNTMGRVVVLDLSQTHRGEYWYLNASLFTPFQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILSSLARLSSLTSLDLSANRLKGSIDIKGPKRLSRLNNLKVFDLSGNLFNNSILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSL**********TLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQFATFNESSYEGNPFLCGPPLPICIS***************NLIDMDIFFITFTTSYVIVIFGIVAVLYVNARWRRRWFYLVEMWTTSCYYFVIDNLIPTRFC*
Disordered Region (DISOPRED)
****KSK*VVMFVLLLIIFEGGWSE*CLNHERFALLQLKLFFIDPYNYLLDWVDDEGATDCCQWERVSCNNTMGRVVVLDLSQTHRGEYWYLNASLFTPFQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILSSLARLSSLTSLDLSANRLKGSIDIKGPKRLSRLNNLKVFDLSGNLFNNSILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERY*****LQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQFATFNESSYEGNPFLCG****************************DIFFITFTTSYVIVIFGIVAVLYVNARWRRRWFYLVEMWTTSCYYFVIDNLIPTRFCH
Disordered Region (DISEMBL)
MGGSKSKMVVMFVLLLIIFEGGWSEGCLNHERFALLQLKLFFIDPYNYLLDWVDDEGATDCCQWERVSCNNTMGRVVVLDLSQTHRGEYWYLNASLFTPFQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILSSLARLSSLTSLDLSANRLKGSIDIKGPKRLSRLNNLKVFDLSGNLFNNSILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQFATFNESSYEGNPFLCGPPLPICISPTTMPEASPSNEGDNNLIDMDIFFITFTTSYVIVIFGIVAVLYVNARWRRRWFYLVEMWTTSCYYFVIDNLIPTRFCH
Disordered Region (DISPRO)
***SKSKMVVMFVLLLIIFEGGWSEGCLNHERFALLQLKLFFIDPYNYLLDWVDDEGATDCCQWERVSCNNTMGRVVVLDLSQTHRGEYWYLNASLFTPFQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILSSLARLSSLTSLDLSANRLKGSIDIKGPKRLSRLNNLKVFDLSGNLFNNSILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQFATFNESSYEGNPFLCGPPLPICIS***************NLIDMDIFFITFTTSYVIVIFGIVAVLYVNARWRRRWFYLVEMWTTSCYYFVIDNLIPTRFC*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGGSKSKMVVMFVLLLIIFEGGWSEGCLNHERFALLQLKLFFIDPYNYLLDWVDDEGATDCCQWERVSCNNTMGRVVVLDLSQTHRGEYWYLNASLFTPFQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILSSLARLSSLTSLDLSANRLKGSIDIKGPKRLSRLNNLKVFDLSGNLFNNSILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQFATFNESSYEGNPFLCGPPLPICISPTTMPEASPSNEGDNNLIDMDIFFITFTTSYVIVIFGIVAVLYVNARWRRRWFYLVEMWTTSCYYFVIDNLIPTRFCH
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	1077	2.2.26 [Sep-21-2011]
Q9FL28	1173	LRR receptor-like serine/	no	no	0.644	0.591	0.297	8e-68
C0LGQ5	1249	LRR receptor-like serine/	no	no	0.748	0.645	0.282	1e-67
Q9FIZ3	1252	LRR receptor-like serine/	no	no	0.655	0.563	0.291	4e-63
Q9ZWC8	1166	Serine/threonine-protein	no	no	0.614	0.567	0.293	6e-59
Q9LJF3	1164	Receptor-like protein kin	no	no	0.605	0.560	0.310	2e-58
Q9LYN8	1192	Leucine-rich repeat recep	no	no	0.668	0.604	0.301	1e-57
Q8GUQ5	1207	Brassinosteroid LRR recep	N/A	no	0.582	0.519	0.296	1e-55
Q8L899	1207	Systemin receptor SR160 O	N/A	no	0.582	0.519	0.295	3e-55
Q9ZPS9	1143	Serine/threonine-protein	no	no	0.528	0.497	0.303	9e-55
C0LGS2	1136	Probable LRR receptor-lik	no	no	0.589	0.558	0.283	9e-55

>sp|Q9FL28|FLS2_ARATH LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1

 Score =  259 bits (662), Expect = 8e-68,   Method: Compositional matrix adjust.
 Identities = 229/769 (29%), Positives = 357/769 (46%), Gaps = 75/769 (9%)

Query: 253  GLRKLSYLHLLRVGIRD-GSKLLQSMGSFPSLNTLDLSYNNFTETVTTTTQGFPHFKSLK 311
             +  L+YL +L +       K+   +G    LN L L  N F+ ++ +          LK
Sbjct: 91   AIANLTYLQVLDLTSNSFTGKIPAEIGKLTELNQLILYLNYFSGSIPS------GIWELK 144

Query: 312  ELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMAD 371
             ++  D R   N      + E +     L L     +N +  + + L  LVHLQ    A 
Sbjct: 145  NIFYLDLR---NNLLSGDVPEEICKTSSLVLIGFDYNNLTGKIPECLGDLVHLQMFVAAG 201

Query: 372  NDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEP 431
            N L GS+P  +  + +L  LD+S NQL G I      +L +++ L+L++N  +  I  E 
Sbjct: 202  NHLTGSIPVSIGTLANLTDLDLSGNQLTGKIPRD-FGNLLNLQSLVLTENLLEGDIPAE- 259

Query: 432  LFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLE 491
            + N S L   +  +N++  +I                            P  L N   L+
Sbjct: 260  IGNCSSLVQLELYDNQLTGKI----------------------------PAELGNLVQLQ 291

Query: 492  YVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQG 551
             +R+   K+    P+ L    T+L  L L  + LVGP    I   + L +L +  NNF G
Sbjct: 292  ALRIYKNKLTSSIPSSLFRL-TQLTHLGLSENHLVGPISEEIGFLESLEVLTLHSNNFTG 350

Query: 552  HIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCV 611
              P  I + L  LTV  +  N + G +P+  G +  L+ L   +N LTG IP  ++  C 
Sbjct: 351  EFPQSITN-LRNLTVLTVGFNNISGELPADLGLLTNLRNLSAHDNLLTGPIPSSIS-NCT 408

Query: 612  SLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSL 671
             L+ L LS+N + G +  R F   NL ++ +  NHF GEIP  +  CS+L+ L +++N+L
Sbjct: 409  GLKLLDLSHNQMTGEI-PRGFGRMNLTFISIGRNHFTGEIPDDIFNCSNLETLSVADNNL 467

Query: 672  SGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLP-SCYDFV 730
            +G +   +G L  LR + +  N + GPIP E   L+ L IL +  N  +G +P    +  
Sbjct: 468  TGTLKPLIGKLQKLRILQVSYNSLTGPIPREIGNLKDLNILYLHSNGFTGRIPREMSNLT 527

Query: 731  CIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNN 790
             ++ + +  N L G + E   F+   L +LDLS N  +G IP     L  L+YL L  N 
Sbjct: 528  LLQGLRMYSNDLEGPIPE-EMFDMKLLSVLDLSNNKFSGQIPALFSKLESLTYLSLQGNK 586

Query: 791  LEGEVPIQLCRLNQLQLLDLSNNNLHGHIP----SCFDNTTLHERYNNGSSLQPFETSFV 846
              G +P  L  L+ L   D+S+N L G IP    +   N  L+  ++N           +
Sbjct: 587  FNGSIPASLKSLSLLNTFDISDNLLTGTIPGELLASLKNMQLYLNFSNN----------L 636

Query: 847  IMGGMDVDPKK-QILESFDFTTKSITYTYQGRVPSLLSG------LDLSCNRLIGHIPPQ 899
            + G +  +  K ++++  D +       + G +P  L        LD S N L GHIP +
Sbjct: 637  LTGTIPKELGKLEMVQEIDLSNN----LFSGSIPRSLQACKNVFTLDFSQNNLSGHIPDE 692

Query: 900  I-GNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFS 958
            +   +  I +LNLS N+ +G IP +F N+ ++ SLDLS N L+ +IP  L  L+TL    
Sbjct: 693  VFQGMDMIISLNLSRNSFSGEIPQSFGNMTHLVSLDLSSNNLTGEIPESLANLSTLKHLK 752

Query: 959  VAYNNLSGKIPERAAQFATFNESSYEGNPFLCGPPLPICISPTTMPEAS 1007
            +A NNL G +PE    F   N S   GN  LCG   P  + P T+ + S
Sbjct: 753  LASNNLKGHVPESGV-FKNINASDLMGNTDLCGSKKP--LKPCTIKQKS 798

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of flagellin (flg22), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Flagellin-binding to the receptor is the first step to initiate the innate immune MAP kinase signaling cascade (MEKK1, MKK4/MKK5 and MPK3/MPK6), resulting in enhanced resistance against pathogens. Binding to the effector AvrPto1 from Pseudomonas syringae blocks the downstream plant immune response.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1

 Score =  259 bits (661), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 288/1018 (28%), Positives = 431/1018 (42%), Gaps = 212/1018 (20%)

Query: 19  FEGGWSEGCLNHERFALLQLKLFFI------DPYNYLLDWVDDEGATDCCQWERVSCNNT 72
           F G    G +N++   LL++K   +      DP   L  W  D    + C W  V+C+NT
Sbjct: 14  FSGLGQPGIINNDLQTLLEVKKSLVTNPQEDDP---LRQWNSDN--INYCSWTGVTCDNT 68

Query: 73  -MGRVVVLDLSQ---THRGEYWYLNASLFTPFQQLESLDLRDNDIAGCVENEGLERLSRL 128
            + RV+ L+L+    T     W      F  F  L  LDL  N++ G +       LS L
Sbjct: 69  GLFRVIALNLTGLGLTGSISPW------FGRFDNLIHLDLSSNNLVGPIPTA----LSNL 118

Query: 129 SNLKMLNLVGNLFNNSILSSLARLSSLTSLDLSANRLKGSIDIKGPKRLSRLNNLKVFDL 188
           ++L+ L L  N     I S L  L ++ SL +  N L G I    P+ L  L NL++  L
Sbjct: 119 TSLESLFLFSNQLTGEIPSQLGSLVNIRSLRIGDNELVGDI----PETLGNLVNLQMLAL 174

Query: 189 SGNLFNNSILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEVP 248
           +       I S L RL  ++SL+L DN LEG I   E  + S+L     + N + N  +P
Sbjct: 175 ASCRLTGPIPSQLGRLVRVQSLILQDNYLEGPIPA-ELGNCSDLTVFTAAENML-NGTIP 232

Query: 249 QACSGLRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTETVTTTTQGFPHFK 308
                                       +G   +L  L+L+ N+ T  + +         
Sbjct: 233 A--------------------------ELGRLENLEILNLANNSLTGEIPSQ-------- 258

Query: 309 SLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCP-----LVH 363
                                +GE M  +QYLSL  + +        QGL P     L +
Sbjct: 259 ---------------------LGE-MSQLQYLSLMANQL--------QGLIPKSLADLGN 288

Query: 364 LQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHF 423
           LQ L ++ N+L G +P    NM+ L  L +++N L GS+  S   + T++E L+LS    
Sbjct: 289 LQTLDLSANNLTGEIPEEFWNMSQLLDLVLANNHLSGSLPKSICSNNTNLEQLVLSGTQL 348

Query: 424 QIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKF 483
              I +E L     LK  D  NN +   I E+        +L  L L +   +G   P  
Sbjct: 349 SGEIPVE-LSKCQSLKQLDLSNNSLAGSIPEA---LFELVELTDLYLHNNTLEGTLSPS- 403

Query: 484 LYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLD 543
           + N  +L+++ L H  +  + P  +     KL  L L  +   G     I +   L+++D
Sbjct: 404 ISNLTNLQWLVLYHNNLEGKLPKEI-SALRKLEVLFLYENRFSGEIPQEIGNCTSLKMID 462

Query: 544 VSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIP 603
           +  N+F+G IP  IG  L  L + ++  N L G +P+S GN + L  LDL++NQL+G IP
Sbjct: 463 MFGNHFEGEIPPSIGR-LKELNLLHLRQNELVGGLPASLGNCHQLNILDLADNQLSGSIP 521

Query: 604 EHLAMGCVSLRSLALSNNNLEGHMFS-----RNFNLTNLIWLQLEG-------------- 644
                    L  L L NN+L+G++       RN    NL   +L G              
Sbjct: 522 SSFGF-LKGLEQLMLYNNSLQGNLPDSLISLRNLTRINLSHNRLNGTIHPLCGSSSYLSF 580

Query: 645 ----NHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIP 700
               N F  EIP  L    +L  L L  N L+GKIP  LG +  L  + M  N + G IP
Sbjct: 581 DVTNNGFEDEIPLELGNSQNLDRLRLGKNQLTGKIPWTLGKIRELSLLDMSSNALTGTIP 640

Query: 701 LEFCQLRILQILDISDNNISGSLPSCYDFVC-IEQVHLSKNMLHGQLKEGTFFNCLTLMI 759
           L+    + L  +D+++N +SG +P     +  + ++ LS N     L     FNC  L++
Sbjct: 641 LQLVLCKKLTHIDLNNNFLSGPIPPWLGKLSQLGELKLSSNQFVESLPT-ELFNCTKLLV 699

Query: 760 LDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHI 819
           L L  N LNG+IP  +  L  L+ L L  N   G +P  + +L++L  L LS N+L G I
Sbjct: 700 LSLDGNSLNGSIPQEIGNLGALNVLNLDKNQFSGSLPQAMGKLSKLYELRLSRNSLTGEI 759

Query: 820 PSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVP 879
                               P E                                 G++ 
Sbjct: 760 --------------------PVEI--------------------------------GQLQ 767

Query: 880 SLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNK 939
            L S LDLS N   G IP  IG L+K++TL+LSHN L G +P +  +++           
Sbjct: 768 DLQSALDLSYNNFTGDIPSTIGTLSKLETLDLSHNQLTGEVPGSVGDMK----------- 816

Query: 940 LSWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQFATFNESSYEGNPFLCGPPLPIC 997
                        +L   +V++NNL GK+ +   QF+ +   S+ GN  LCG PL  C
Sbjct: 817 -------------SLGYLNVSFNNLGGKLKK---QFSRWPADSFLGNTGLCGSPLSRC 858

Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FIZ3|GSO2_ARATH LRR receptor-like serine/threonine-protein kinase GSO2 OS=Arabidopsis thaliana GN=GSO2 PE=2 SV=2

 Score =  244 bits (622), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 243/835 (29%), Positives = 390/835 (46%), Gaps = 129/835 (15%)

Query: 250 ACSGLRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTETVTTTT-------- 301
            C G R++  L+L  +G+     +  S+G F +L  +DLS N     + TT         
Sbjct: 67  TCGG-REIIGLNLSGLGLT--GSISPSIGRFNNLIHIDLSSNRLVGPIPTTLSNLSSSLE 123

Query: 302 --------------QGFPHFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSV 347
                                +LK L + D    LN +  +  G ++ ++Q L+L++  +
Sbjct: 124 SLHLFSNLLSGDIPSQLGSLVNLKSLKLGDNE--LNGTIPETFG-NLVNLQMLALASCRL 180

Query: 348 SNNSRTLDQGLCP-----LVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSI 402
           +        GL P     LV LQ L + DN+L G +P  + N TSL +   + N+L GS+
Sbjct: 181 T--------GLIPSRFGRLVQLQTLILQDNELEGPIPAEIGNCTSLALFAAAFNRLNGSL 232

Query: 403 SSSPLIHLTSIEDLILSDNHF--QIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTT 460
            +  L  L +++ L L DN F  +IP  L  L +   L +     N++   I +     T
Sbjct: 233 PAE-LNRLKNLQTLNLGDNSFSGEIPSQLGDLVSIQYLNLI---GNQLQGLIPKR---LT 285

Query: 461 PNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSL 520
               LQ+L LSS    G+   +F +  + LE++ L+  +++   P  +  NNT L+QL L
Sbjct: 286 ELANLQTLDLSSNNLTGVIHEEF-WRMNQLEFLVLAKNRLSGSLPKTICSNNTSLKQLFL 344

Query: 521 VNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIP------LEIGDI-------------- 560
               L G     I + + L+LLD+S N   G IP      +E+ ++              
Sbjct: 345 SETQLSGEIPAEISNCQSLKLLDLSNNTLTGQIPDSLFQLVELTNLYLNNNSLEGTLSSS 404

Query: 561 ---LSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLA 617
              L+ L  F +  N L+G +P   G +  L+ + L  N+ +GE+P  +   C  L+ + 
Sbjct: 405 ISNLTNLQEFTLYHNNLEGKVPKEIGFLGKLEIMYLYENRFSGEMPVEIG-NCTRLQEID 463

Query: 618 LSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPR 677
              N L G + S    L +L  L L  N  VG IP SL  C  +  + L++N LSG IP 
Sbjct: 464 WYGNRLSGEIPSSIGRLKDLTRLHLRENELVGNIPASLGNCHQMTVIDLADNQLSGSIPS 523

Query: 678 WLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSL-PSC-------YDF 729
             G LT L   ++  N ++G +P     L+ L  ++ S N  +GS+ P C       +D 
Sbjct: 524 SFGFLTALELFMIYNNSLQGNLPDSLINLKNLTRINFSSNKFNGSISPLCGSSSYLSFDV 583

Query: 730 V----------------CIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPD 773
                             ++++ L KN   G++   TF     L +LD+S N L+G IP 
Sbjct: 584 TENGFEGDIPLELGKSTNLDRLRLGKNQFTGRIPR-TFGKISELSLLDISRNSLSGIIPV 642

Query: 774 RVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPS-CFDNTTLHERY 832
            +    +L+++ L +N L G +P  L +L  L  L LS+N   G +P+  F  T +   +
Sbjct: 643 ELGLCKKLTHIDLNNNYLSGVIPTWLGKLPLLGELKLSSNKFVGSLPTEIFSLTNILTLF 702

Query: 833 NNGSSLQ---PFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLD--- 886
            +G+SL    P E     +G +      Q L + +     ++    G +PS +  L    
Sbjct: 703 LDGNSLNGSIPQE-----IGNL------QALNALNLEENQLS----GPLPSTIGKLSKLF 747

Query: 887 ---LSCNRLIGHIPPQIGNLTKIQT-LNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSW 942
              LS N L G IP +IG L  +Q+ L+LS+NN  G IPST S L  +ESLDLS+N+L  
Sbjct: 748 ELRLSRNALTGEIPVEIGQLQDLQSALDLSYNNFTGRIPSTISTLPKLESLDLSHNQLVG 807

Query: 943 KIPYQLVELNTLAVFSVAYNNLSGKIPERAAQFATFNESSYEGNPFLCGPPLPIC 997
           ++P Q+ ++ +L   +++YNNL GK+ +   QF+ +   ++ GN  LCG PL  C
Sbjct: 808 EVPGQIGDMKSLGYLNLSYNNLEGKLKK---QFSRWQADAFVGNAGLCGSPLSHC 859

Together with GSO1, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons. Involved in the nuclear division phase of megagametogenesis.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9ZWC8|BRL1_ARATH Serine/threonine-protein kinase BRI1-like 1 OS=Arabidopsis thaliana GN=BRL1 PE=1 SV=1

 Score =  230 bits (586), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 217/739 (29%), Positives = 334/739 (45%), Gaps = 77/739 (10%)

Query: 363  HLQELHMADNDLR--GSLPWCLANMTSLRILDVSSNQLIGSISSSP--LIHLTSIEDL-- 416
            +LQ L ++ N +     + +  +  ++L  +++S+N+L+G +  +P  L  LT++ DL  
Sbjct: 126  YLQVLDLSSNSISDYSMVDYVFSKCSNLVSVNISNNKLVGKLGFAPSSLQSLTTV-DLSY 184

Query: 417  -ILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYR 475
             ILSD   +IP S    F  S LK  D  +N ++ +  +       N    SL  S    
Sbjct: 185  NILSD---KIPESFISDFPAS-LKYLDLTHNNLSGDFSDLSFGICGNLTFFSL--SQNNL 238

Query: 476  DGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHS 535
             G  FP  L N   LE + +S   +  + PN                    G +     S
Sbjct: 239  SGDKFPITLPNCKFLETLNISRNNLAGKIPN--------------------GEY---WGS 275

Query: 536  HKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSN 595
             + L+ L ++ N   G IP E+  +   L + ++S N   G +PS F    +LQ L+L N
Sbjct: 276  FQNLKQLSLAHNRLSGEIPPELSLLCKTLVILDLSGNTFSGELPSQFTACVWLQNLNLGN 335

Query: 596  NQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQ-- 653
            N L+G+    +      +  L ++ NN+ G +     N +NL  L L  N F G +P   
Sbjct: 336  NYLSGDFLNTVVSKITGITYLYVAYNNISGSVPISLTNCSNLRVLDLSSNGFTGNVPSGF 395

Query: 654  -SLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQIL 712
             SL     L+ + ++NN LSG +P  LG    L+ I +  N + GPIP E   L  L  L
Sbjct: 396  CSLQSSPVLEKILIANNYLSGTVPMELGKCKSLKTIDLSFNELTGPIPKEIWMLPNLSDL 455

Query: 713  DISDNNISGSLPS--CYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGN 770
             +  NN++G++P   C     +E + L+ N+L G + E +   C  ++ + LS N L G 
Sbjct: 456  VMWANNLTGTIPEGVCVKGGNLETLILNNNLLTGSIPE-SISRCTNMIWISLSSNRLTGK 514

Query: 771  IPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHE 830
            IP  +  LS+L+ L L +N+L G VP QL     L  LDL++NNL G +P         E
Sbjct: 515  IPSGIGNLSKLAILQLGNNSLSGNVPRQLGNCKSLIWLDLNSNNLTGDLPG--------E 566

Query: 831  RYNNGSSLQPFETS---FVIM---GGMDVDPKKQILESFDFTTKSI-----------TYT 873
              +    + P   S   F  +   GG D      ++E      + +           T  
Sbjct: 567  LASQAGLVMPGSVSGKQFAFVRNEGGTDCRGAGGLVEFEGIRAERLERLPMVHSCPATRI 626

Query: 874  YQGRVPSLLSG------LDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNL 927
            Y G      S        D+S N + G IPP  GN+  +Q LNL HN + G IP +F  L
Sbjct: 627  YSGMTMYTFSANGSMIYFDISYNAVSGFIPPGYGNMGYLQVLNLGHNRITGTIPDSFGGL 686

Query: 928  RNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQFATFNESSYEGNP 987
            + I  LDLS+N L   +P  L  L+ L+   V+ NNL+G IP    Q  TF  S Y  N 
Sbjct: 687  KAIGVLDLSHNNLQGYLPGSLGSLSFLSDLDVSNNNLTGPIP-FGGQLTTFPVSRYANNS 745

Query: 988  FLCGPPLPICISPTTMPEASPSNEGDNNLIDMDIFFITFT-TSYVIVIFGIVAVLYVNAR 1046
             LCG PL  C S    P  S  +     +    I  I F+   +V+++  +  V  V  +
Sbjct: 746  GLCGVPLRPCGSAPRRPITSRIHAKKQTVATAVIAGIAFSFMCFVMLVMALYRVRKVQKK 805

Query: 1047 WRRRWFYLVEMWTT-SCYY 1064
             ++R  Y+  + T+ SC +
Sbjct: 806  EQKREKYIESLPTSGSCSW 824

Receptor with a serine/threonine-protein kinase activity. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development. Binds brassinolide. May be involved in cell growth and vascular differentiation.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LJF3|BRL3_ARATH Receptor-like protein kinase BRI1-like 3 OS=Arabidopsis thaliana GN=BRL3 PE=1 SV=1

 Score =  228 bits (580), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 221/712 (31%), Positives = 329/712 (46%), Gaps = 60/712 (8%)

Query: 388  LRILDVSSNQLIGS----ISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDA 443
            L +LD+SSN L  S       S  ++L S+     S N     +   P  ++ R+   D 
Sbjct: 126  LEVLDLSSNSLTDSSIVDYVFSTCLNLVSVN---FSHNKLAGKLKSSPSASNKRITTVDL 182

Query: 444  ENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQ-HDLEYVRLSHIKMN- 501
             NN  + EI E+     PN  L+ L LS     G  F +  +    +L    LS   ++ 
Sbjct: 183  SNNRFSDEIPETFIADFPN-SLKHLDLSGNNVTG-DFSRLSFGLCENLTVFSLSQNSISG 240

Query: 502  EEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSH----KQLRLLDVSKNNFQGHIPLEI 557
            + FP   L N   L  L+L  +SL+G  ++P   +    + LR L ++ N + G IP E+
Sbjct: 241  DRFP-VSLSNCKLLETLNLSRNSLIG--KIPGDDYWGNFQNLRQLSLAHNLYSGEIPPEL 297

Query: 558  GDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLA 617
              +   L V ++S N+L G +P SF +   LQ L+L NN+L+G+    +      + +L 
Sbjct: 298  SLLCRTLEVLDLSGNSLTGQLPQSFTSCGSLQSLNLGNNKLSGDFLSTVVSKLSRITNLY 357

Query: 618  LSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQ---SLSKCSSLQGLFLSNNSLSGK 674
            L  NN+ G +     N +NL  L L  N F GE+P    SL   S L+ L ++NN LSG 
Sbjct: 358  LPFNNISGSVPISLTNCSNLRVLDLSSNEFTGEVPSGFCSLQSSSVLEKLLIANNYLSGT 417

Query: 675  IPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPS--CYDFVCI 732
            +P  LG    L+ I +  N + G IP E   L  L  L +  NN++G +P   C D   +
Sbjct: 418  VPVELGKCKSLKTIDLSFNALTGLIPKEIWTLPKLSDLVMWANNLTGGIPESICVDGGNL 477

Query: 733  EQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLE 792
            E + L+ N+L G L E +   C  ++ + LS N L G IP  +  L +L+ L L +N+L 
Sbjct: 478  ETLILNNNLLTGSLPE-SISKCTNMLWISLSSNLLTGEIPVGIGKLEKLAILQLGNNSLT 536

Query: 793  GEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETS---FVIM- 848
            G +P +L     L  LDL++NNL G++P         E  +    + P   S   F  + 
Sbjct: 537  GNIPSELGNCKNLIWLDLNSNNLTGNLPG--------ELASQAGLVMPGSVSGKQFAFVR 588

Query: 849  --GGMDVDPKKQILESFDFTTKSI-----------TYTYQGRVPSLLSG------LDLSC 889
              GG D      ++E      + +           T  Y G    + S       LDLS 
Sbjct: 589  NEGGTDCRGAGGLVEFEGIRAERLEHFPMVHSCPKTRIYSGMTMYMFSSNGSMIYLDLSY 648

Query: 890  NRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLV 949
            N + G IP   G +  +Q LNL HN L G IP +F  L+ I  LDLS+N L   +P  L 
Sbjct: 649  NAVSGSIPLGYGAMGYLQVLNLGHNLLTGTIPDSFGGLKAIGVLDLSHNDLQGFLPGSLG 708

Query: 950  ELNTLAVFSVAYNNLSGKIPERAAQFATFNESSYEGNPFLCGPPLPICISPT--TMPEAS 1007
             L+ L+   V+ NNL+G IP    Q  TF  + Y  N  LCG PLP C S +  T   A 
Sbjct: 709  GLSFLSDLDVSNNNLTGPIP-FGGQLTTFPLTRYANNSGLCGVPLPPCSSGSRPTRSHAH 767

Query: 1008 PSNEGDNNLIDMDIFFITFTTSYVIVIFGIVAVLYVNARWRRRWFYLVEMWT 1059
            P  +     +   I F +F    V++I  +     V  + ++R  Y+  + T
Sbjct: 768  PKKQSIATGMSAGIVF-SFMC-IVMLIMALYRARKVQKKEKQREKYIESLPT 817

Receptor with a dual specificity kinase activity acting on both serine/threonine- and tyrosine-containing substrates. Binds brassinolide. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development. May be involved in cell growth and vascular differentiation.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LYN8|EXS_ARATH Leucine-rich repeat receptor protein kinase EXS OS=Arabidopsis thaliana GN=EXS PE=1 SV=1

 Score =  226 bits (575), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 243/805 (30%), Positives = 369/805 (45%), Gaps = 85/805 (10%)

Query: 197 ILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRK 256
           I   ++ L +LR L L  N+  G I   E  +L +L+ LD+S N +    +P+  S L +
Sbjct: 81  IPKEISSLKNLRELCLAGNQFSGKIP-PEIWNLKHLQTLDLSGNSLTGL-LPRLLSELPQ 138

Query: 257 LSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMD 316
           L YL L       GS       S P+L++LD+S N+ +  +           +L  LYM 
Sbjct: 139 LLYLDLSDNHF-SGSLPPSFFISLPALSSLDVSNNSLSGEIPPEIG---KLSNLSNLYM- 193

Query: 317 DARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRG 376
                LN+   QI  E + +I  L    +     +  L + +  L HL +L ++ N L+ 
Sbjct: 194 ----GLNSFSGQIPSE-IGNISLLKNFAAPSCFFNGPLPKEISKLKHLAKLDLSYNPLKC 248

Query: 377 SLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHS 436
           S+P     + +L IL++ S +LIG I    L +  S++ L+LS N    P+ LE   +  
Sbjct: 249 SIPKSFGELHNLSILNLVSAELIGLIPPE-LGNCKSLKSLMLSFNSLSGPLPLE--LSEI 305

Query: 437 RLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLS 496
            L  F AE N+++                             + P ++     L+ + L+
Sbjct: 306 PLLTFSAERNQLSG----------------------------SLPSWMGKWKVLDSLLLA 337

Query: 497 HIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLE 556
           + + + E P+ + E+   L+ LSL ++ L G     +     L  +D+S N   G I  E
Sbjct: 338 NNRFSGEIPHEI-EDCPMLKHLSLASNLLSGSIPRELCGSGSLEAIDLSGNLLSGTIE-E 395

Query: 557 IGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSL 616
           + D  S L    ++ N ++GSIP     +  +  LDL +N  TGEIP+ L     +L   
Sbjct: 396 VFDGCSSLGELLLTNNQINGSIPEDLWKLPLMA-LDLDSNNFTGEIPKSL-WKSTNLMEF 453

Query: 617 ALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIP 676
             S N LEG++ +   N  +L  L L  N   GEIP+ + K +SL  L L+ N   GKIP
Sbjct: 454 TASYNRLEGYLPAEIGNAASLKRLVLSDNQLTGEIPREIGKLTSLSVLNLNANMFQGKIP 513

Query: 677 RWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPS--CYDFVCIEQ 734
             LG+ T L  + +  N+++G IP +   L  LQ L +S NN+SGS+PS     F  IE 
Sbjct: 514 VELGDCTSLTTLDLGSNNLQGQIPDKITALAQLQCLVLSYNNLSGSIPSKPSAYFHQIEM 573

Query: 735 VHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGE 794
             LS    HG              I DLSYN L+G IP+ +     L  + L++N+L GE
Sbjct: 574 PDLSFLQHHG--------------IFDLSYNRLSGPIPEELGECLVLVEISLSNNHLSGE 619

Query: 795 VPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYN--NGSSLQPFETSFVIMGGMD 852
           +P  L RL  L +LDLS N L G IP    N+   +  N  N         SF ++G   
Sbjct: 620 IPASLSRLTNLTILDLSGNALTGSIPKEMGNSLKLQGLNLANNQLNGHIPESFGLLGS-- 677

Query: 853 VDPKKQILESFDFTTKSITYTYQGRVPSLLSGL------DLSCNRLIGHIPPQIGNLTKI 906
                  L   + T   +     G VP+ L  L      DLS N L G +  ++  + K+
Sbjct: 678 -------LVKLNLTKNKL----DGPVPASLGNLKELTHMDLSFNNLSGELSSELSTMEKL 726

Query: 907 QTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSG 966
             L +  N   G IPS   NL  +E LD+S N LS +IP ++  L  L   ++A NNL G
Sbjct: 727 VGLYIEQNKFTGEIPSELGNLTQLEYLDVSENLLSGEIPTKICGLPNLEFLNLAKNNLRG 786

Query: 967 KIPERAAQFATFNESSYEGNPFLCG 991
           ++P         +++   GN  LCG
Sbjct: 787 EVPSDGV-CQDPSKALLSGNKELCG 810

Receptor with a serine/threonine-protein kinase activity required for the specification of the correct number of male archesporial initials and for the subsequent specification of tapetal and middle cell layer identities. In seeds, required for enhancing cell size and the rate of embryonic development.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8GUQ5|BRI1_SOLLC Brassinosteroid LRR receptor kinase OS=Solanum lycopersicum GN=CURL3 PE=1 SV=1

 Score =  219 bits (558), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 214/721 (29%), Positives = 325/721 (45%), Gaps = 94/721 (13%)

Query: 364  LQELHMADNDLRGS--LPWCLA-NMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSD 420
            LQ L ++ N++ G    PW  +     L    +  N+L GSI   P +   ++  L LS 
Sbjct: 187  LQVLDLSYNNISGFNLFPWVSSMGFVELEFFSLKGNKLAGSI---PELDFKNLSYLDLSA 243

Query: 421  NHFQIPISLEPLFNH-SRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGIT 479
            N+F    ++ P F   S L+  D  +N+   +I  S S      +L  L L++    G+ 
Sbjct: 244  NNFS---TVFPSFKDCSNLQHLDLSSNKFYGDIGSSLSSCG---KLSFLNLTNNQFVGLV 297

Query: 480  FPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQL 539
             PK       L+Y+ L        +PN L +    + +L L  ++  G     +     L
Sbjct: 298  -PKL--PSESLQYLYLRGNDFQGVYPNQLADLCKTVVELDLSYNNFSGMVPESLGECSSL 354

Query: 540  RLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLT 599
             L+D+S NNF G +P++    LS +    +S N   G +P SF N+  L+ LD+S+N LT
Sbjct: 355  ELVDISYNNFSGKLPVDTLSKLSNIKTMVLSFNKFVGGLPDSFSNLLKLETLDMSSNNLT 414

Query: 600  GEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCS 659
            G IP  +                           + NL  L L+ N F G IP SLS CS
Sbjct: 415  GVIPSGICKD-----------------------PMNNLKVLYLQNNLFKGPIPDSLSNCS 451

Query: 660  SLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNI 719
             L  L LS N L+G IP  LG+L+ L+ +I+  N + G IP E   L+ L+ L +  N++
Sbjct: 452  QLVSLDLSFNYLTGSIPSSLGSLSKLKDLILWLNQLSGEIPQELMYLQALENLILDFNDL 511

Query: 720  SGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLS 779
            +G +P+                        +  NC  L  + LS N L+G IP  +  LS
Sbjct: 512  TGPIPA------------------------SLSNCTKLNWISLSNNQLSGEIPASLGRLS 547

Query: 780  QLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTT--------LHER 831
             L+ L L +N++ G +P +L     L  LDL+ N L+G IP      +          +R
Sbjct: 548  NLAILKLGNNSISGNIPAELGNCQSLIWLDLNTNFLNGSIPPPLFKQSGNIAVALLTGKR 607

Query: 832  Y----NNGSSLQPFETSFVIMGGMDVDPKKQILE----SFDFTTKSITYTYQGRVPSLLS 883
            Y    N+GS       + +  GG+  +   +I      +F    + IT        S++ 
Sbjct: 608  YVYIKNDGSKECHGAGNLLEFGGIRQEQLDRISTRHPCNFTRVYRGITQPTFNHNGSMIF 667

Query: 884  GLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWK 943
             LDLS N+L G IP ++G +  +  LNL HN+L+G IP     L+N+  LDLSYN+ +  
Sbjct: 668  -LDLSYNKLEGSIPKELGAMYYLSILNLGHNDLSGMIPQQLGGLKNVAILDLSYNRFNGT 726

Query: 944  IPYQLVELNTLAVFSVAYNNLSGKIPERAAQFATFNESSYEGNPFLCGPPLPICISPTTM 1003
            IP  L  L  L    ++ NNLSG IPE +A F TF +  +  N  LCG PLPI  S    
Sbjct: 727  IPNSLTSLTLLGEIDLSNNNLSGMIPE-SAPFDTFPDYRFANNS-LCGYPLPIPCSSGPK 784

Query: 1004 PEASPSNEGDNNL------IDMDIFFITFTTSYVIVIFGIVAVLYVNARWRRRWFYLVEM 1057
             +A+   +           + M + F  F       IFG++ V     + RR+    +E 
Sbjct: 785  SDANQHQKSHRRQASLAGSVAMGLLFSLF------CIFGLIIVAIETKKRRRKKEAALEA 838

Query: 1058 W 1058
            +
Sbjct: 839  Y 839

Receptor with a serine/threonine-protein kinase activity. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development, including expression of light- and stress-regulated genes, promotion of cell elongation, normal leaf and chloroplast senescence, and flowering. May be involved in a feedback regulation of brassinosteroid biosynthesis. May be also involved in the perception of systemin, a peptide hormone responsible for the systemic activation of defense genes in leaves of wounded plants.

Solanum lycopersicum (taxid: 4081)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8L899|BRI1_SOLPE Systemin receptor SR160 OS=Solanum peruvianum PE=1 SV=1

 Score =  218 bits (554), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 213/721 (29%), Positives = 325/721 (45%), Gaps = 94/721 (13%)

Query: 364  LQELHMADNDLRGS--LPWCLA-NMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSD 420
            LQ L ++ N++ G    PW  +     L    +  N+L GSI   P +   ++  L LS 
Sbjct: 187  LQVLDLSYNNISGFNLFPWVSSMGFVELEFFSIKGNKLAGSI---PELDFKNLSYLDLSA 243

Query: 421  NHFQIPISLEPLFNH-SRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGIT 479
            N+F    ++ P F   S L+  D  +N+   +I  S S      +L  L L++    G+ 
Sbjct: 244  NNFS---TVFPSFKDCSNLQHLDLSSNKFYGDIGSSLSSCG---KLSFLNLTNNQFVGLV 297

Query: 480  FPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQL 539
             PK       L+Y+ L        +PN L +    + +L L  ++  G     +     L
Sbjct: 298  -PKL--PSESLQYLYLRGNDFQGVYPNQLADLCKTVVELDLSYNNFSGMVPESLGECSSL 354

Query: 540  RLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLT 599
             L+D+S NNF G +P++    LS +    +S N   G +P SF N+  L+ LD+S+N LT
Sbjct: 355  ELVDISNNNFSGKLPVDTLLKLSNIKTMVLSFNKFVGGLPDSFSNLPKLETLDMSSNNLT 414

Query: 600  GEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCS 659
            G IP  +                           + NL  L L+ N F G IP SLS CS
Sbjct: 415  GIIPSGICKD-----------------------PMNNLKVLYLQNNLFKGPIPDSLSNCS 451

Query: 660  SLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNI 719
             L  L LS N L+G IP  LG+L+ L+ +I+  N + G IP E   L+ L+ L +  N++
Sbjct: 452  QLVSLDLSFNYLTGSIPSSLGSLSKLKDLILWLNQLSGEIPQELMYLQALENLILDFNDL 511

Query: 720  SGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLS 779
            +G +P+                        +  NC  L  + LS N L+G IP  +  LS
Sbjct: 512  TGPIPA------------------------SLSNCTKLNWISLSNNQLSGEIPASLGRLS 547

Query: 780  QLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTT--------LHER 831
             L+ L L +N++ G +P +L     L  LDL+ N L+G IP      +          +R
Sbjct: 548  NLAILKLGNNSISGNIPAELGNCQSLIWLDLNTNFLNGSIPPPLFKQSGNIAVALLTGKR 607

Query: 832  Y----NNGSSLQPFETSFVIMGGMDVDPKKQILE----SFDFTTKSITYTYQGRVPSLLS 883
            Y    N+GS       + +  GG+  +   +I      +F    + IT        S++ 
Sbjct: 608  YVYIKNDGSKECHGAGNLLEFGGIRQEQLDRISTRHPCNFTRVYRGITQPTFNHNGSMIF 667

Query: 884  GLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWK 943
             LDLS N+L G IP ++G +  +  LNL HN+L+G IP     L+N+  LDLSYN+ +  
Sbjct: 668  -LDLSYNKLEGSIPKELGAMYYLSILNLGHNDLSGMIPQQLGGLKNVAILDLSYNRFNGT 726

Query: 944  IPYQLVELNTLAVFSVAYNNLSGKIPERAAQFATFNESSYEGNPFLCGPPLPICISPTTM 1003
            IP  L  L  L    ++ NNLSG IPE +A F TF +  +  N  LCG PLP+  S    
Sbjct: 727  IPNSLTSLTLLGEIDLSNNNLSGMIPE-SAPFDTFPDYRFANNS-LCGYPLPLPCSSGPK 784

Query: 1004 PEASPSNEGDNNL------IDMDIFFITFTTSYVIVIFGIVAVLYVNARWRRRWFYLVEM 1057
             +A+   +           + M + F  F       IFG++ V     + RR+    +E 
Sbjct: 785  SDANQHQKSHRRQASLAGSVAMGLLFSLF------CIFGLIIVAIETKKRRRKKEAALEA 838

Query: 1058 W 1058
            +
Sbjct: 839  Y 839

Receptor with a serine/threonine-protein kinase activity. Involved in the perception of systemin, a peptide hormone responsible for the systemic activation of defense genes in leaves of wounded plants. May also regulate, in response to brassinosteroid binding, a signaling cascade involved in plant development.

Solanum peruvianum (taxid: 4082)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9ZPS9|BRL2_ARATH Serine/threonine-protein kinase BRI1-like 2 OS=Arabidopsis thaliana GN=BRL2 PE=1 SV=1

 Score =  216 bits (550), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 198/652 (30%), Positives = 291/652 (44%), Gaps = 83/652 (12%)

Query: 370 ADNDLRGSLPW-CLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPIS 428
           + + L G+LP    +  ++L  + +S N   G + +   +    ++ L LS N+   PIS
Sbjct: 135 SSSGLIGTLPENFFSKYSNLISITLSYNNFTGKLPNDLFLSSKKLQTLDLSYNNITGPIS 194

Query: 429 --LEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYN 486
               PL +   +   D   N I+  I +S    T    L+SL LS    DG   PK    
Sbjct: 195 GLTIPLSSCVSMTYLDFSGNSISGYISDSLINCT---NLKSLNLSYNNFDG-QIPKSFGE 250

Query: 487 QHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSK 546
              L+ + LSH ++    P  + +    L+ L L  ++  G     + S   L+ LD+S 
Sbjct: 251 LKLLQSLDLSHNRLTGWIPPEIGDTCRSLQNLRLSYNNFTGVIPESLSSCSWLQSLDLSN 310

Query: 547 NNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHL 606
           NN  G  P  I      L +  +S N + G  P+S      L+  D S+N+ +G IP  L
Sbjct: 311 NNISGPFPNTILRSFGSLQILLLSNNLISGDFPTSISACKSLRIADFSSNRFSGVIPPDL 370

Query: 607 AMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFL 666
             G  SL  L L +                        N   GEIP ++S+CS L+ + L
Sbjct: 371 CPGAASLEELRLPD------------------------NLVTGEIPPAISQCSELRTIDL 406

Query: 667 SNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSC 726
           S N L+G IP  +GNL  L   I   N+I G IP E  +L+ L+ L +++N ++G +P  
Sbjct: 407 SLNYLNGTIPPEIGNLQKLEQFIAWYNNIAGEIPPEIGKLQNLKDLILNNNQLTGEIPP- 465

Query: 727 YDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLIL 786
                                   FFNC  +  +  + N L G +P     LS+L+ L L
Sbjct: 466 -----------------------EFFNCSNIEWVSFTSNRLTGEVPKDFGILSRLAVLQL 502

Query: 787 AHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIP-------------SCFDNTTLHERYN 833
            +NN  GE+P +L +   L  LDL+ N+L G IP                   T+    N
Sbjct: 503 GNNNFTGEIPPELGKCTTLVWLDLNTNHLTGEIPPRLGRQPGSKALSGLLSGNTMAFVRN 562

Query: 834 NGSSLQPFETSFVIMGGMDVDPKKQI--LESFDFTTKSITYTYQGRVPSLLSG------L 885
            G+S +      V   G+  +   QI  L+S DF     T  Y G + SL +       L
Sbjct: 563 VGNSCKGV-GGLVEFSGIRPERLLQIPSLKSCDF-----TRMYSGPILSLFTRYQTIEYL 616

Query: 886 DLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIP 945
           DLS N+L G IP +IG +  +Q L LSHN L+G IP T   L+N+   D S N+L  +IP
Sbjct: 617 DLSYNQLRGKIPDEIGEMIALQVLELSHNQLSGEIPFTIGQLKNLGVFDASDNRLQGQIP 676

Query: 946 YQLVELNTLAVFSVAYNNLSGKIPERAAQFATFNESSYEGNPFLCGPPLPIC 997
                L+ L    ++ N L+G IP+R  Q +T   + Y  NP LCG PLP C
Sbjct: 677 ESFSNLSFLVQIDLSNNELTGPIPQR-GQLSTLPATQYANNPGLCGVPLPEC 727

Receptor with a serine/threonine-protein kinase activity, which may transduce extracellular spatial and temporal signals into downstream cell differentiation responses in provascular and procambial cells. In contrast to BRI1, BRL1 and BRL3, it does not bind brassinolide.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGS2|Y4361_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g36180 OS=Arabidopsis thaliana GN=At4g36180 PE=1 SV=1

 Score =  216 bits (549), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 210/740 (28%), Positives = 332/740 (44%), Gaps = 105/740 (14%)

Query: 353  TLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTS 412
            T+   L     L  + +  N L G LP  + N+TSL + +V+ N+L G I   P+   +S
Sbjct: 107  TIPTSLAYCTRLLSVFLQYNSLSGKLPPAMRNLTSLEVFNVAGNRLSGEI---PVGLPSS 163

Query: 413  IEDLILSDNHF--QIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLL 470
            ++ L +S N F  QIP  L    N ++L++ +   N++  EI                  
Sbjct: 164  LQFLDISSNTFSGQIPSGLA---NLTQLQLLNLSYNQLTGEI------------------ 202

Query: 471  SSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFR 530
                      P  L N   L+Y+ L    +    P+  + N + L  LS   + + G   
Sbjct: 203  ----------PASLGNLQSLQYLWLDFNLLQGTLPS-AISNCSSLVHLSASENEIGGVIP 251

Query: 531  LPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSI-PSSFGNMNF-L 588
                +  +L +L +S NNF G +P  +    + LT+  +  NA    + P +  N    L
Sbjct: 252  AAYGALPKLEVLSLSNNNFSGTVPFSL-FCNTSLTIVQLGFNAFSDIVRPETTANCRTGL 310

Query: 589  QFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFV 648
            Q LDL  N+++G  P  L    +SL++L +S N   G +     NL  L  L+L  N   
Sbjct: 311  QVLDLQENRISGRFPLWLT-NILSLKNLDVSGNLFSGEIPPDIGNLKRLEELKLANNSLT 369

Query: 649  GEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRI 708
            GEIP  + +C SL  L    NSL G+IP +LG +  L+ + + +N   G +P     L+ 
Sbjct: 370  GEIPVEIKQCGSLDVLDFEGNSLKGQIPEFLGYMKALKVLSLGRNSFSGYVPSSMVNLQQ 429

Query: 709  LQILDISDNNISGSLP-SCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHL 767
            L+ L++ +NN++GS P        + ++ LS N   G +   +  N   L  L+LS N  
Sbjct: 430  LERLNLGENNLNGSFPVELMALTSLSELDLSGNRFSGAVPV-SISNLSNLSFLNLSGNGF 488

Query: 768  NGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTT 827
            +G IP  V  L +L+ L L+  N+ GEVP++L  L  +Q++ L  NN  G +P  F ++ 
Sbjct: 489  SGEIPASVGNLFKLTALDLSKQNMSGEVPVELSGLPNVQVIALQGNNFSGVVPEGF-SSL 547

Query: 828  LHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTY-----QGRVP--- 879
            +  RY N SS      SF            +I ++F F    ++ +       G +P   
Sbjct: 548  VSLRYVNLSS-----NSF----------SGEIPQTFGFLRLLVSLSLSDNHISGSIPPEI 592

Query: 880  ---SLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLS------------------------ 912
               S L  L+L  NRL+GHIP  +  L +++ L+L                         
Sbjct: 593  GNCSALEVLELRSNRLMGHIPADLSRLPRLKVLDLGQNNLSGEIPPEISQSSSLNSLSLD 652

Query: 913  HNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNT-LAVFSVAYNNLSGKIPER 971
            HN+L+G IP +FS L N+  +DLS N L+ +IP  L  +++ L  F+V+ NNL G+IP  
Sbjct: 653  HNHLSGVIPGSFSGLSNLTKMDLSVNNLTGEIPASLALISSNLVYFNVSSNNLKGEIPAS 712

Query: 972  AAQFATFNESSYEGNPFLCGPPL-PICISPTTMPEASPSNEGDNNLIDMDIFFITFTTSY 1030
                   N S + GN  LCG PL   C S T         EG      M +  +      
Sbjct: 713  LGSRIN-NTSEFSGNTELCGKPLNRRCESSTA--------EGKKKKRKMILMIVMAAIGA 763

Query: 1031 VIVIFGIVAVLYVNARWRRR 1050
             ++       +Y   +WR++
Sbjct: 764  FLLSLFCCFYVYTLLKWRKK 783

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	1077
255581263	912	serine-threonine protein kinase, plant-t	0.703	0.831	0.495	0.0
359476165	1464	PREDICTED: LRR receptor-like serine/thre	0.894	0.657	0.429	0.0
224098008	1097	predicted protein [Populus trichocarpa]	0.931	0.914	0.4	0.0
224073422	969	predicted protein [Populus trichocarpa]	0.839	0.932	0.412	1e-179
224142481	781	predicted protein [Populus trichocarpa]	0.688	0.950	0.471	1e-178
224123984	1016	predicted protein [Populus trichocarpa]	0.885	0.938	0.402	1e-178
224112245	876	predicted protein [Populus trichocarpa]	0.794	0.977	0.398	1e-178
224073436	1014	predicted protein [Populus trichocarpa]	0.893	0.948	0.397	1e-177
359482735	1097	PREDICTED: receptor-like protein 12-like	0.959	0.941	0.379	1e-176
224124490	981	predicted protein [Populus trichocarpa]	0.808	0.887	0.414	1e-173

>gi|255581263|ref|XP_002531443.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223528936|gb|EEF30930.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis]

 Score =  712 bits (1838), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 399/805 (49%), Positives = 527/805 (65%), Gaps = 47/805 (5%)

Query: 282  SLNTLDLSYNNFTET----------------------VTTTTQGFPHFKSLKELYMDDAR 319
            SL  LDLSYN+F E+                      V    Q  P+F++L+ELY+D  +
Sbjct: 129  SLEVLDLSYNSFNESILSSLSEFSSLKSLNLGFNPFEVPIQAQDLPNFENLEELYLD--K 186

Query: 320  IALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLP 379
            I L  SFLQ +G  M S++ LSLS   ++     + QGLC L+HL+ L ++ N+  G LP
Sbjct: 187  IELENSFLQTVG-VMTSLKVLSLSGCGLTGALPNV-QGLCELIHLRVLDVSSNEFHGILP 244

Query: 380  WCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLK 439
            WCL+N+TSL++LD+SSNQ +G IS+SPL  L S+ DL +S+NHFQ+P SL P FNHS LK
Sbjct: 245  WCLSNLTSLQLLDLSSNQFVGDISNSPLKILKSLVDLDVSNNHFQVPFSLGPFFNHSNLK 304

Query: 440  IFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIK 499
                +NN I  E  E HS   P FQL S++ S GY    TFP FLY+Q++L++V LSH+ 
Sbjct: 305  HIRGQNNAIYLEA-ELHS--APRFQLISIIFS-GYGICGTFPNFLYHQNNLQFVDLSHLS 360

Query: 500  MNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGD 559
            +  EFPNWLL NNT+L  L LVN+SL G  +LP+H H  L  LD+S N+   HIPLEIG 
Sbjct: 361  LKGEFPNWLLTNNTRLEILDLVNNSLSGHLQLPLHPHVNLLALDISNNHVHDHIPLEIGT 420

Query: 560  ILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALS 619
             L +L + N+S N  DGSIPSSFGNMN L+ LDLSNNQL+G IPEHLA GC SL +L LS
Sbjct: 421  FLPKLELLNMSSNGFDGSIPSSFGNMNSLRILDLSNNQLSGSIPEHLATGCFSLNTLILS 480

Query: 620  NNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWL 679
            NN+L+G MFS+ FNLTNL WL+L+ NHF G IP+SLSK S+L  + LS+N LSG IP W+
Sbjct: 481  NNSLQGQMFSKQFNLTNLWWLELDKNHFSGRIPKSLSK-SALSIMDLSDNHLSGMIPGWI 539

Query: 680  GNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSK 739
            GNL+ L+++I+  N ++GPIP+EFCQL  L++LD+++N++SG LPSC     I  VHLS+
Sbjct: 540  GNLSYLQNLILSNNRLKGPIPVEFCQLHYLEVLDLANNSVSGILPSCLSPSSIIHVHLSQ 599

Query: 740  NMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQL 799
            NM+ G      F     L+ LDLS N + G IP  + G++ L  L L  N  +GE+P Q+
Sbjct: 600  NMIEGPWTNA-FSGSHFLVTLDLSSNRITGRIPTLIGGINALRILNLKSNRFDGEIPAQI 658

Query: 800  CRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQI 859
            C L QL L+ L++NNL G IPSC        + +   SL P              P + +
Sbjct: 659  CGLYQLSLIVLADNNLSGSIPSCL-------QLDQSDSLAPDVPPVPNPLNPYYLPVRPM 711

Query: 860  LESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGP 919
                 FTTK  +Y+YQG++ S +SG+D SCN+L G IPP++GN + I +LNLS+N   GP
Sbjct: 712  Y----FTTKRRSYSYQGKILSYISGIDFSCNKLTGEIPPEMGNHSAIYSLNLSYNRFTGP 767

Query: 920  IPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQFATFN 979
            IPSTFSNL+ IESLDLSYN L+  IP QL+EL  L+ FSVA+NNL GK P+R  QFATF 
Sbjct: 768  IPSTFSNLKQIESLDLSYNNLNGDIPSQLLELKFLSYFSVAHNNLFGKTPKRTGQFATFE 827

Query: 980  ESSYEGNPFLCGPPLPICIS---PTTMPEASPSNEGDNNLIDMDIFFITFTTSYVIVIFG 1036
             SSYEGNP LCG PLP   +    ++ P AS  +E ++N +DM+ F+ +F  SY  VI G
Sbjct: 828  VSSYEGNPNLCGLPLPKSCTEREASSAPRASAMDE-ESNFLDMNTFYGSFIVSYTFVIIG 886

Query: 1037 IVAVLYVNARWRRRWFYLVEMWTTS 1061
            +  VLY+N +WRR WF  V++  +S
Sbjct: 887  MFLVLYINPQWRRAWFDFVDICISS 911

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359476165|ref|XP_002283141.2| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1-like [Vitis vinifera]

 Score =  679 bits (1753), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 457/1065 (42%), Positives = 617/1065 (57%), Gaps = 102/1065 (9%)

Query: 28   LNHERFALLQLKLFFIDP-YNYLLDWVDDEGATDCCQWERVSCNNTMGRVVVLDLSQTHR 86
            L  ER ALL+LK  F  P  + L  W D+E  +DCC WERV C+NT GRV+ L L+ T  
Sbjct: 469  LYEERIALLELKAAFCSPDCSSLPSWEDEE--SDCCGWERVECSNTTGRVLKLFLNNTRE 526

Query: 87   G--EYWYLNASLFTPFQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNS 144
               E  YLNASLF PF +L                            K+LNL        
Sbjct: 527  SSQEDLYLNASLFIPFVEL----------------------------KILNL-------- 550

Query: 145  ILSSLARLSSLTSLDLSANRLKGSIDIKGPKRLSRLNNLKVFDLSGNLFNNSILSSLARL 204
                            S N L    D  G +R  +LNNL++ DLS N  + SIL+SL  L
Sbjct: 551  ----------------STNMLVTLGDDDGSERPFKLNNLELLDLSNNTLDISILASLTEL 594

Query: 205  SSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLR 264
            SSL+SL L  N LEGSI  +E  +L NLEELD+S N++++F        LRKL  LHL  
Sbjct: 595  SSLKSLSLGTNILEGSI--QELAALHNLEELDLSKNDLESFITTTGLKSLRKLRVLHLET 652

Query: 265  VGIRDGSKLLQSMGSFPSLNTLDLSYNNFTETVTTTTQGFPHFKSLKEL-YMDDARIALN 323
                  +  L+S+G    L  L L  N    +VT          +L+ L  +D +   ++
Sbjct: 653  NDFNIST--LKSLGRLSLLKELYLGGNKLEGSVT-----LRELNNLRNLEVLDLSSTNIS 705

Query: 324  TSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLA 383
            +S LQI+ E M S++ LSL ++ + N S+T  QGLC L +LQEL ++DN   GS+  CL 
Sbjct: 706  SSILQIV-EVMTSLKALSLRSNGI-NGSQTALQGLCKLKNLQELDLSDNGFEGSVSPCLG 763

Query: 384  NMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFD- 442
            N+TSLR LD+S N+  G++ SS    L  +E L LS N FQ    +     HS+L++ D 
Sbjct: 764  NLTSLRALDLSKNRFSGNLDSSLFAGLMKLEFLSLSHNVFQTFPPISSFAKHSKLEVLDL 823

Query: 443  -AENNEINAEIIESHSLT-TPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKM 500
               NN +   ++ES   T  P+FQL+   LSS      + P FL+ QHDL  V LS+  +
Sbjct: 824  ICGNNTL---LLESEDQTWVPSFQLKVFRLSSCILKTGSIPSFLHYQHDLRVVDLSNSSL 880

Query: 501  NEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDI 560
             E+FP WL++NNT+L +L+L N+SL G F LP   +     +D+S N  QG +P  I   
Sbjct: 881  EEDFPTWLMKNNTRLEELNLKNNSLTGYFHLPYRPNIFTSAIDISNNLLQGQMPSNISVS 940

Query: 561  LSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSN 620
            L  L   N+S N+ +GSIPS FG M  L FLDLSNN  TG IPE LAMGC SL  L LS 
Sbjct: 941  LPNLMFLNVSRNSFEGSIPS-FGGMRKLLFLDLSNNLFTGGIPEDLAMGCPSLEYLILSK 999

Query: 621  NNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLG 680
            N+L G MF R  NL +L  L+L+ NHF G+IP  LS  S L+ L++S+NS+SGK+P W+G
Sbjct: 1000 NDLHGQMFPRVSNLPSLRHLELDDNHFSGKIPD-LSNSSGLERLYVSHNSISGKLPGWIG 1058

Query: 681  NLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKN 740
            N++ L  ++MP N +EGPIP+EFC L  L++LD+S+NN+SGSLPSC+    +  VHL +N
Sbjct: 1059 NMSNLAALVMPNNSLEGPIPVEFCSLDALELLDLSNNNLSGSLPSCFSPSLLIHVHLQEN 1118

Query: 741  MLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLC 800
             L G L +  F   + L  LD+  N+L+G IPD +   S LS L+L  N+ +G++P QLC
Sbjct: 1119 HLTGPLTKA-FTRSMDLATLDIRNNNLSGGIPDWISMFSGLSILLLKGNHFQGKIPYQLC 1177

Query: 801  RLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGS-----------------SLQPFET 843
            +L+++ +LDLS N+L GHIPSC +       + +G                    Q  E 
Sbjct: 1178 QLSKITILDLSYNSLSGHIPSCLNKIQFRTGFRSGKFSIISYFPSPGFSSYLYHSQHIEL 1237

Query: 844  SFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNL 903
            S V +    +   K + E   FTTK+ T  Y+G     ++G+DLS N+L G IPP+IGNL
Sbjct: 1238 SQVNVNSYPIAYDKAMAE---FTTKNRTDFYKGNFLYSMTGIDLSSNKLTGAIPPEIGNL 1294

Query: 904  TKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNN 963
            +++  LNLSHN L GPIP+ FS L++IESLDLSYN L+  IP +L EL  LAVFSVAYNN
Sbjct: 1295 SQVHALNLSHNILTGPIPAAFSGLKSIESLDLSYNNLTGTIPGELTELTNLAVFSVAYNN 1354

Query: 964  LSGKIPERAAQFATFNESSYEGNPFLCGPPLPI-CISPTTMPEASPSNEGDNNLIDMDIF 1022
            LSGKIPE  AQF TF E+SY GNP+LCG  L   C       E     +G   L D DIF
Sbjct: 1355 LSGKIPEMTAQFGTFLENSYVGNPYLCGSLLRKNCSRAEEEAEIEEGEKG---LTDRDIF 1411

Query: 1023 FITFTTSYVIVIFGIVAVLYVNARWRRRWFYLVEMWTTSCYYFVI 1067
            +++F  SYV+V+ G+ AVLY+N  WR++WF+++++  T C  FV+
Sbjct: 1412 YVSFGASYVVVLLGVAAVLYINGGWRKKWFHVIDVLITCCCNFVM 1456

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224098008|ref|XP_002334579.1| predicted protein [Populus trichocarpa] gi|222873205|gb|EEF10336.1| predicted protein [Populus trichocarpa]

 Score =  669 bits (1725), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 456/1140 (40%), Positives = 624/1140 (54%), Gaps = 137/1140 (12%)

Query: 7    KMVVMFVLLLIIFEGGW---SEGCLNHERFALLQLKLFFIDPY--NYLLDWVDDEGATDC 61
            ++    +L L    G W     GCL  ER  LL+++   I+P+  ++   WVD    ++C
Sbjct: 5    RIGAWMLLALFTLVGEWHGRCYGCLEEERIGLLEIQ-SLINPHGVSWRDHWVDTN--SNC 61

Query: 62   CQWERVSCNNTMGRVVVLDL---SQTHRGEYWYLNASLFTPFQQLESLDLRDNDIAGCVE 118
            C+W  + C+NT  RV+ L L      H G+ W LNASLF PF++L  LDL    + GC+E
Sbjct: 62   CEWRGIECDNTTRRVIQLSLWGARDFHLGD-WVLNASLFQPFKELRGLDLGGTGLVGCME 120

Query: 119  NEGLERL----------------------------------------------------S 126
            NEG E L                                                    S
Sbjct: 121  NEGFEVLSSKLSNLDLRVNKFTNDKSILSCFNGNLSTLKSLDLSFNGLTAGSGGLKVLSS 180

Query: 127  RLSNLKMLNLVGNLFNNSILSSLARLSSLTSLDLSANRLKGSIDIKGPKRLSRLNNLKVF 186
            RL  L+ L L  N +N+SI  SL   SSL SL LS N+L GS       RL +L NL + 
Sbjct: 181  RLKKLENLLLRENQYNDSIFPSLTGFSSLKSLYLSGNQLTGSGLKDLSSRLKKLENLHLS 240

Query: 187  DLSGNLFNNSILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFE 246
            ++     N+SI  SL   SSL+SL L  N+L GS        L  LE LD+S+N I N  
Sbjct: 241  EIQC---NDSIFPSLTGFSSLKSLYLSGNQLTGSGFEIISSHLGKLENLDLSHNNIFNDS 297

Query: 247  VPQACSGLRKLSYLHLLRV------------GIRDGSKLLQSMGSFPSLNTLDLSYNNFT 294
            +    S LR LS+L  L +            G+R+   +LQS+ S+PSL TL L   N +
Sbjct: 298  I---LSHLRGLSHLKSLNLSGNMLLGSTTINGLRN-LDILQSLRSWPSLKTLSLKDTNLS 353

Query: 295  ETVTTTTQGFPHFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTL 354
            +        F +  +L+EL++D+  + +N  FLQ  G ++P+++ LS++   +  +    
Sbjct: 354  QGT------FFNSSTLEELHLDNTSLPIN--FLQNTG-ALPALKVLSVAECDL--HGTLP 402

Query: 355  DQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIE 414
             QG C L +L++L +A N+  G+LP CL N++SL++LDVS NQ  G+I+  PL  L S+E
Sbjct: 403  AQGWCELKNLKQLDLARNNFGGALPDCLGNLSSLQLLDVSDNQFTGNIAFGPLTKLISLE 462

Query: 415  DLILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGY 474
             L LS+N F++PIS++P  NHS LK F +ENN +  E     +L  P FQL    LSS  
Sbjct: 463  FLSLSNNLFEVPISMKPFMNHSSLKFFSSENNRLVTESAAFDNL-IPKFQLVFFRLSSSP 521

Query: 475  RD---GITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRL 531
                  +    FLY Q+DL  + LSH  +   FP+WLL+NNT++ QL L  +S VG  +L
Sbjct: 522  TSEALNVEILDFLYYQYDLRTLDLSHNNIFGMFPSWLLKNNTRMEQLYLSENSFVGTLQL 581

Query: 532  PIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFL 591
              H +  +  LD+S NN  G IP +I  I   L +  ++ N   G IPS  GN + L FL
Sbjct: 582  LDHPYPNMTELDISNNNINGQIPKDICLIFPNLWILRMADNGFTGYIPSCLGNFSSLSFL 641

Query: 592  DLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEI 651
            DLSNNQL+    E L     +++ L LSNN+L G + +  FN +   +L L GN+F G+I
Sbjct: 642  DLSNNQLSTVKLEQL----TTIQVLKLSNNSLGGQIPTSVFNSSISQYLYLGGNYFWGQI 697

Query: 652  PQ-SLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQ 710
                L        L LSNN  SG +PR   N T    + + KN  +GPIP +FC+L  L+
Sbjct: 698  SDFPLYGWKVWSVLDLSNNQFSGMLPRSFFNFTYDEVLDLSKNLFKGPIPRDFCKLDRLE 757

Query: 711  ILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGN 770
             LD+SDN +SG +PSC++   I  +HLSKN L G L  G F+N  +L+ +DL  N   G+
Sbjct: 758  FLDLSDNYLSGYMPSCFNPPQITHIHLSKNRLSGPLTYG-FYNSSSLVTMDLRDNSFIGS 816

Query: 771  IPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHE 830
            IP+ +  LS LS L+L  NN +GE+ +QLC L QL +LD+S N L G +PSC  N TL E
Sbjct: 817  IPNWIGNLSSLSVLLLRANNFDGELAVQLCLLEQLSILDVSQNQLSGPLPSCLGNLTLKE 876

Query: 831  RYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCN 890
               N                                   I ++  G+V S + G+DLS N
Sbjct: 877  IPENARG------------------------------SRIWFSVMGKVLSYMYGIDLSNN 906

Query: 891  RLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVE 950
              +G IPP+ GNL+KI +LNLSHNNL G IP+TFSNL+ IESLDLSYN L+  IP QL E
Sbjct: 907  NFVGAIPPEFGNLSKILSLNLSHNNLTGSIPATFSNLKQIESLDLSYNNLNGAIPPQLTE 966

Query: 951  LNTLAVFSVAYNNLSGKIPERAAQFATF-NESSYEGNPFLCGPPLPICISPTTMP-EASP 1008
            + TL VFSVAYNNLSG+ PER  QF TF +E+ YEGNPFLCGPPL    S   +P +  P
Sbjct: 967  ITTLEVFSVAYNNLSGRTPERKYQFGTFDDENCYEGNPFLCGPPLRNNCSEEAVPLQPVP 1026

Query: 1009 SNE-GDNNLIDMDIFFITFTTSYVIVIFGIVAVLYVNARWRRRWFYLVEMWTTSCYYFVI 1067
            ++E GD+  IDM+ F+I+F   Y +V+  I AVLY+N  WRRRW Y +E    +CYYFV+
Sbjct: 1027 NDEQGDDGFIDMEFFYISFGVCYTVVVMTIAAVLYINPYWRRRWSYFIEDCINTCYYFVV 1086

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224073422|ref|XP_002304093.1| predicted protein [Populus trichocarpa] gi|222841525|gb|EEE79072.1| predicted protein [Populus trichocarpa]

 Score =  634 bits (1636), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 426/1032 (41%), Positives = 576/1032 (55%), Gaps = 128/1032 (12%)

Query: 63   QWERVSCNNTMGRVVVLDL--SQTHRGEYWYLNASLFTPFQQLESLDLRDNDIAGCVENE 120
            +W R+ C+NT  RV+ L L  ++  R   W LNASLF PF++L+SLDL  N + GC+ENE
Sbjct: 28   RWPRIECDNTTKRVIQLSLFDARDFRLGDWVLNASLFLPFKELQSLDLGYNGLVGCLENE 87

Query: 121  GLERLSRLSNLKMLNLVGNLFNN--SILSSLARLSSLTSLDLSANRLKGSIDIKGPKRLS 178
            G + LS  S L+ L L  N FNN  SILS    L  L+S                  RL 
Sbjct: 88   GFQVLS--SKLRELGLSDNRFNNDKSILSCFNGLKVLSS------------------RLK 127

Query: 179  RLNNLKVFDLSGNLFNNSILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMS 238
            +L NL   DLSGN  N++I  +L   SSL+SL L  N+L                     
Sbjct: 128  KLENL---DLSGNQCNDTIFPALTGFSSLKSLDLSGNQL--------------------- 163

Query: 239  YNEIDNFEVPQACSGLRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTETVT 298
                         SGLRKL +L  LR                 SL TL L   N ++   
Sbjct: 164  -----------TASGLRKLDFLQSLR-----------------SLKTLSLKDTNLSQGT- 194

Query: 299  TTTQGFPHFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGL 358
                 F +  +L+EL++D+  + +N  FLQ    ++P+++ LS+    +        QG 
Sbjct: 195  -----FFNSSTLEELHLDNTSLPIN--FLQNT-RALPALKVLSVGECDLHGTLPA--QGW 244

Query: 359  CPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLIL 418
            C L +L++L +A N+  G+LP CL N++SL +LDVS NQ  G+I S PL +L S+E L L
Sbjct: 245  CELKNLKQLDLARNNFGGALPDCLGNLSSLTLLDVSENQFTGNIVSGPLTNLVSLEFLSL 304

Query: 419  SDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSL-LLSSGYRDG 477
            S+N F++P S++P  NHS LK F +ENN +  E     +L  P FQL  L LL +     
Sbjct: 305  SNNLFEVPTSMKPFMNHSSLKFFSSENNRLVTEPAAFDNLI-PKFQLVFLSLLKTTEALN 363

Query: 478  ITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHK 537
            +  P FLY Q+DL  + LSH  +   FP+WLL+NNT++ QL L ++S VG  +LP H + 
Sbjct: 364  VHIPDFLYYQYDLRVLDLSHNNITGMFPSWLLKNNTRMEQLDLSDNSFVGTLQLPDHPYP 423

Query: 538  QLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQ 597
             +  LD+S NN    IP +I  IL  L    +  N   G IPS  GN++ L  LDLSNNQ
Sbjct: 424  NMTKLDISNNNMNSQIPKDICLILPNLESLRMVKNGFTGCIPSCLGNISSLSVLDLSNNQ 483

Query: 598  LTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQ-SLS 656
            L+    E L     +L  L LSNNNL G +    FN + L +L L GN+F G+I   SL 
Sbjct: 484  LSTVKLELLT----TLMFLKLSNNNLGGQIPISVFNSSTLEFLYLNGNNFCGQILYLSLY 539

Query: 657  KCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEF-CQLRILQILDIS 715
            +      L LSNN  SG +PRW  N TVL  I + KNH +GPIP +F C+   L+ LD+S
Sbjct: 540  EQKMWFVLDLSNNQFSGMLPRWFVNSTVLEAIDLSKNHFKGPIPRDFFCKFDHLEYLDLS 599

Query: 716  DNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRV 775
            +NN+SG +PSC+    I  +HLSKN L G L  G F+N  +L+ +DL  N    +IP+ +
Sbjct: 600  ENNLSGYIPSCFSPPQITHLHLSKNRLSGPLTYG-FYNSSSLVTMDLQDNSFTDSIPNWI 658

Query: 776  DGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHER---- 831
              LS LS L+L  N+ +           QL +LD+S N L G +PSC  N T  E     
Sbjct: 659  GNLSSLSVLLLRANHFD----------EQLSILDVSQNQLSGPLPSCLGNLTFKESSQKA 708

Query: 832  ------YNNGSSLQPFETSFVIMGGMDVDPK--------KQILESFDFTTKSITYTYQGR 877
                  ++   S++  +T +  MG   VD            I E  +FTTK ++Y Y+G+
Sbjct: 709  ILDFVIFDISRSIE--KTYYETMGPPLVDSVYLGKGFGLNLIEEVIEFTTKKMSYGYKGK 766

Query: 878  VPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSY 937
            V + +SG+DLS N  +G IPP+ GNL++I +LNLSHNNL G IP+TFSNL+ IESLDLSY
Sbjct: 767  VLNYMSGIDLSNNNFVGAIPPEFGNLSEILSLNLSHNNLTGSIPATFSNLKQIESLDLSY 826

Query: 938  NKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQFATFNESSYEGNPFLCGPPLP-I 996
            N L+  IP QL E+ TL VFSVA+NNLSGK PER  QF TF+ES YEGNPFLCGPPL   
Sbjct: 827  NNLNGVIPPQLTEITTLEVFSVAHNNLSGKTPERKYQFGTFDESCYEGNPFLCGPPLRNN 886

Query: 997  CISPTTMPEASPSNE-GDNNLIDMDIFFITFTTSYVIVIFGIVAVLYVNARWRRRWFYLV 1055
            C       +  P++E GD+  +DM+ F+I+F   Y +V+  I AVLY+N  WRRRW + +
Sbjct: 887  CSEEAVSSQPVPNDEQGDDGFVDMEFFYISFGVCYTVVVMTIAAVLYINPYWRRRWLFFI 946

Query: 1056 EMWTTSCYYFVI 1067
            E    +CYYF +
Sbjct: 947  EDCIDTCYYFGV 958

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224142481|ref|XP_002324585.1| predicted protein [Populus trichocarpa] gi|222866019|gb|EEF03150.1| predicted protein [Populus trichocarpa]

 Score =  634 bits (1634), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 374/794 (47%), Positives = 506/794 (63%), Gaps = 52/794 (6%)

Query: 299  TTTQGFPHFKSLKELYMDDARI-ALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLD-Q 356
             T+ GF     L +L + +     +N S L  + E + S+++L+L N+ +     ++D +
Sbjct: 16   ATSTGFERSLRLNKLEILELSFNKINDSTLSFL-EGLSSLKHLNLDNNQLKG---SIDMK 71

Query: 357  GLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDL 416
            GLC L  LQEL ++ NDL G LP CL N+ +L++LD+S N   G+IS S +  LTSI DL
Sbjct: 72   GLCELKQLQELDISYNDLNG-LPSCLTNLNNLQVLDISFNNFSGNISLSRIGSLTSIRDL 130

Query: 417  ILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRD 476
             LSDNHFQIPISL P FN S LK  + ++NEI       H+L  P FQLQ L L+  +  
Sbjct: 131  KLSDNHFQIPISLGPFFNLSNLKNLNGDHNEIYESTELVHNLI-PRFQLQRLSLAC-HGF 188

Query: 477  GITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSH 536
            G TFPKFLY QHDL++V LSHIK+  EFP+WLL+NNTKL  L LVN SL G  +LP  SH
Sbjct: 189  GGTFPKFLYYQHDLQFVDLSHIKIIGEFPSWLLQNNTKLEALYLVNSSLSGSLQLPNDSH 248

Query: 537  KQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNN 596
              L  LD+S+N+ Q  IP +IG     L   N+S N   GSIPSS  NM+ L  LDLSNN
Sbjct: 249  VNLSRLDISRNHIQNQIPTKIGAYFPWLEFLNLSRNYFSGSIPSSISNMSSLGVLDLSNN 308

Query: 597  QLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLS 656
             L+G IPE L  GC+SLR L LSNN+L+G  F R+FNL  L  L L GN   G +P SLS
Sbjct: 309  GLSGNIPEQLVEGCLSLRGLVLSNNHLKGQFFWRSFNLAYLTDLILSGNQLTGILPNSLS 368

Query: 657  KCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISD 716
              S L+ L +S N+LSGKIPRW+G ++ L+++ + +N++ G +P  FC  R +       
Sbjct: 369  NGSRLEALDVSLNNLSGKIPRWIGYMSSLQYLDLSENNLYGSLPSSFCSSRTMT------ 422

Query: 717  NNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVD 776
                             +V+LSKN L G L  G    CL+L  LDLS+N+  G IP+ + 
Sbjct: 423  -----------------EVYLSKNKLEGSLI-GALDGCLSLNRLDLSHNYFGGGIPESIG 464

Query: 777  GLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGS 836
             L +LS+L+L +NNLEG++P QLC+L +L L+DLS+N+L GHI  C   T+  +R    +
Sbjct: 465  SLLELSFLLLGYNNLEGKIPSQLCKLEKLSLIDLSHNHLFGHILPCLQPTSKWQRERE-T 523

Query: 837  SLQPFETSFVIMGGMDVDPK----------KQILESFDFTTKSITYTYQGRVPSLLSGLD 886
            SL P   S   +G  +  P+            + +S +FTTKSI+Y+++G +   +SG+D
Sbjct: 524  SLNPSGNS---LGRENRGPQIVFPVPAVEDPSMNKSVEFTTKSISYSFKGIILKYISGID 580

Query: 887  LSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPY 946
            LSCN L G IP ++GNL+ IQ LNLSHN+L GPIP TFSNL+ IESLDLSYN L+ +IP 
Sbjct: 581  LSCNNLTGEIPVELGNLSNIQVLNLSHNSLTGPIPPTFSNLKEIESLDLSYNNLNGEIPR 640

Query: 947  QLVELNTLAVFSVAYNNLSGKIPERAAQFATFNESSYEGNPFLCGPPLP----ICISPTT 1002
            QL++LN L+ FSVA+NNLSGK PE  AQF+TFN+S YEGNP LCGPPL       + P+ 
Sbjct: 641  QLLDLNFLSAFSVAHNNLSGKTPEMVAQFSTFNKSCYEGNPLLCGPPLARNCTRALPPSP 700

Query: 1003 MPEASPSNEGDNNLIDMDIFFITFTTSYVIVIFGIVAVLYVNARWRRRWFYLVEMWTTSC 1062
            +P +    + +N +IDM+ F +TF+ +Y++V+  I +VLY+N RWRR WFY +     +C
Sbjct: 701  LPRSQTHKKEENGVIDMEAFIVTFSVAYIMVLLTIGSVLYINPRWRRAWFYFIGESINNC 760

Query: 1063 YYFVIDNL-IPTRF 1075
            YYF++DNL +P RF
Sbjct: 761  YYFLVDNLPVPARF 774

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224123984|ref|XP_002330258.1| predicted protein [Populus trichocarpa] gi|222871714|gb|EEF08845.1| predicted protein [Populus trichocarpa]

 Score =  634 bits (1634), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 430/1067 (40%), Positives = 587/1067 (55%), Gaps = 113/1067 (10%)

Query: 26   GCLNHERFALLQLKLFFIDPYNY---LLDWVDD-EGATDCCQWERVSCNNTMGRVVVLDL 81
            GCL  ER  LL++K   IDP +    L DW+D+ E   +CC+W  + C+NT  RV+    
Sbjct: 27   GCLEDERIGLLEIKAL-IDPNSVQGELSDWMDNKEDIGNCCEWSGIVCDNTTRRVI---- 81

Query: 82   SQTHRGEYWYLNASLFTPFQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLF 141
                                QL  +  RD  +   V N  L                   
Sbjct: 82   --------------------QLSLMRARDFRLGDWVLNASL------------------- 102

Query: 142  NNSILSSLARLSSLTSLDLSANRLKGSIDIKGPKRLS-RLNNLKVFDLSGNLF-NNSILS 199
                         L SLDL    L G  + +G   LS +L  L V  LS N F ++SILS
Sbjct: 103  -------FLPFEELQSLDLGETGLVGCSENEGFGTLSSKLRKLHVLGLSYNKFYSDSILS 155

Query: 200  SLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSY 259
                LSSL+SL L  N L GS +    + LS                     S L+KL  
Sbjct: 156  CFTGLSSLKSLDLSWNTLTGSANFYGLNVLS---------------------SRLKKLEN 194

Query: 260  LHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDAR 319
            LHL   G +    +  S+  F SL +LDLSYN  T + T+    F +  +L+ELY+D + 
Sbjct: 195  LHL--RGNQYNDSIFSSLTGFSSLKSLDLSYNMLTGS-TSINGTFFNSTTLEELYLDGSS 251

Query: 320  IALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLP 379
            + LN  FL  IG  +P+++ LS     +  N     QGLC L +L++L +++N+L GSLP
Sbjct: 252  LPLN--FLHNIG-VLPALKVLSAGECDL--NGTLPAQGLCGLKNLEQLFLSENNLEGSLP 306

Query: 380  WCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLK 439
             C  N++SL++LDVS NQ IG+I+SSPL +L S+E + LS+NHFQ+PIS++P  NHS L+
Sbjct: 307  DCFKNLSSLQLLDVSRNQFIGNIASSPLTNLLSLEFISLSNNHFQVPISMKPFMNHSSLR 366

Query: 440  IFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITF--PKFLYNQHDLEYVRLSH 497
             F ++NN +  E +  H L  P FQL    LS    + +    P FLYNQHDL  + LS 
Sbjct: 367  FFSSDNNRLVTEPMSFHDLI-PKFQLVFFSLSKSSSEALNVETPSFLYNQHDLRVLDLSQ 425

Query: 498  IKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEI 557
                  FP+WLL+NNT+L QL L  +S  G  +L  H +  +  +D+S NN  G IP  I
Sbjct: 426  NSFIGMFPSWLLKNNTRLEQLFLNENSFFGTLQLQDHPNPDMTAIDISNNNMHGEIPKNI 485

Query: 558  GDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLA 617
              I S L    ++ N L G IPS  GN + L  LDLSNNQL+    E      ++L  L 
Sbjct: 486  CLIFSNLWTLRMAKNGLTGCIPSCLGNSSSLGVLDLSNNQLSMVELEQF----ITLTFLK 541

Query: 618  LSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLF-LSNNSLSGKIP 676
            LSNNNL G + +   N + L +L L  N+F G+I    S   ++  +  LSNN  SG +P
Sbjct: 542  LSNNNLGGQLPASMVNSSRLNYLYLSDNNFWGQISDFPSPIKTIWPVLDLSNNQFSGMLP 601

Query: 677  RWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVH 736
            RW  NLT +  I + KNH  GPIP+EFC+L  L+ LD+SDNN+  S+PSC++   I  VH
Sbjct: 602  RWFVNLTQIFAIDLSKNHFNGPIPVEFCKLDELKYLDLSDNNLFDSIPSCFNPPHITHVH 661

Query: 737  LSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVP 796
            LSKN L G L  G F+N  +L+ LDL  N+  G+I + +  LS LS L+L  NN +GE  
Sbjct: 662  LSKNRLSGPLTYG-FYNSSSLVTLDLRDNNFTGSISNWIGNLSSLSVLLLRANNFDGEFL 720

Query: 797  IQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGS-------SLQPFETSF---- 845
            +QLC L QL +LD+S N L G +PSC  N +  E Y   S          P E ++    
Sbjct: 721  VQLCLLEQLSILDVSQNQLSGPLPSCLGNLSFKESYEKASVDFGFHFGSTPIEKAYYEFN 780

Query: 846  ---VIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGN 902
                ++G   +    +  E  +FT KS+ Y Y+G++ S +SG+DLS N+  G IPP++GN
Sbjct: 781  QTRALLGSSYIPITTE--EVIEFTAKSMYYGYKGKILSFMSGIDLSSNKFSGAIPPELGN 838

Query: 903  LTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYN 962
            L+++  LNLSHNNL G IP+TFSNL+ IES DLSYN L   IP++L E+ TL VFSVA+N
Sbjct: 839  LSELLALNLSHNNLTGSIPATFSNLKQIESFDLSYNNLDGVIPHKLYEITTLEVFSVAHN 898

Query: 963  NLSGKIPERAAQFATFNESSYEGNPFLCGPPLPICISPTTMPEASPSNEG--DNNLIDMD 1020
            NLSG+ PER  QF TF+ESSYEGNPFLCGPPL    S    P     N+   D+  IDM+
Sbjct: 899  NLSGETPERKYQFGTFDESSYEGNPFLCGPPLQNNCSEEESPSLPMPNDKQEDDGFIDMN 958

Query: 1021 IFFITFTTSYVIVIFGIVAVLYVNARWRRRWFYLVEMWTTSCYYFVI 1067
             F+I+    Y++V+ GI AVLY+N  WR  WF  ++    +C+ F++
Sbjct: 959  FFYISLGVGYIVVVMGIAAVLYINPYWRCGWFNFIDYCIDTCFNFLL 1005

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224112245|ref|XP_002332815.1| predicted protein [Populus trichocarpa] gi|222833209|gb|EEE71686.1| predicted protein [Populus trichocarpa]

 Score =  632 bits (1629), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 422/1058 (39%), Positives = 576/1058 (54%), Gaps = 202/1058 (19%)

Query: 8    MVVMFVLLLIIFEGGWSEGCLNHERFALLQLKLFFIDPYNY-----LLDWVDDEGATDCC 62
            M ++  ++++  +G    GCL  ER ALL LK    D +NY     L  W+ D+    CC
Sbjct: 7    MSMVLAIMMVSLQGWLPLGCLEEERIALLHLK----DAFNYPNGTSLPSWIKDDA--HCC 60

Query: 63   QWERVSCNNTMGRVVVLDLSQTHRGEY--WYLNASLFTPFQQLESLDLRDNDIAGCVENE 120
             WE + C+++ GRV+ L L  T   E   WY NASLF PFQQ                  
Sbjct: 61   DWEHIECSSSTGRVIELVLDSTRNEEVGDWYFNASLFRPFQQ------------------ 102

Query: 121  GLERLSRLSNLKMLNLVGNLFNNSILSSLARLSSLTSLDLSANRLKGSIDIKGPKRLSRL 180
                                              L  L LS NR+ G ++IKGP  L  L
Sbjct: 103  ----------------------------------LEWLSLSYNRIAGWVEIKGPNNLRYL 128

Query: 181  NNLKVFDLSGNLFNNSILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYN 240
            + LK    +G+ F   +LSSL    +L ++ L DN  +G+I   E  +LS+LE+L ++  
Sbjct: 129  S-LKNITTNGSSFQ--LLSSLGAFPNLTTVYLNDNDFKGTI--LELQNLSSLEKLYLNGC 183

Query: 241  EIDNFEVPQACSGLRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTETVTTT 300
             +D   + Q    L  L YL L  V            G  PS                  
Sbjct: 184  FLDENSI-QILGALSSLKYLSLYEVS-----------GIVPS------------------ 213

Query: 301  TQGFPH-FKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLC 359
             QGF +  K+L+ LY  ++   L+ S LQ IG ++ S++ L L    ++     L  GLC
Sbjct: 214  -QGFLNILKNLEHLYSSNS--TLDNSILQSIG-TITSLKILELVKCRLNGQ---LPIGLC 266

Query: 360  PLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILS 419
             L +LQEL M DND+ G L  CLAN+TSL+ LD+SSN                       
Sbjct: 267  NLNNLQELDMRDNDISGFLIPCLANLTSLQRLDLSSN----------------------- 303

Query: 420  DNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGIT 479
              H +IP+SL PL+N S+LK F   +NEI AE  + H+L+ P FQLQSL LS+  +    
Sbjct: 304  --HLKIPMSLSPLYNLSKLKSFHGLDNEIYAEE-DDHNLS-PKFQLQSLYLSNHGQGARA 359

Query: 480  FPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQL 539
            FP+FLY+Q +L+ + L++I+M  +FPNWL+ENNT L+ L L N SL GPF LP +SH  L
Sbjct: 360  FPRFLYHQLNLQSLDLTNIQMKGDFPNWLIENNTYLKNLYLENCSLSGPFLLPKNSHMNL 419

Query: 540  RLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLT 599
             +L +S N  QG IP EIG  L RLTV ++S N  +GSIPSS  NM+ L+ LDLSNN LT
Sbjct: 420  SILSISMNYLQGQIPSEIGAHLPRLTVLSMSHNGFNGSIPSSLSNMSLLRDLDLSNNVLT 479

Query: 600  GEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCS 659
            G IP+HL         L LSNN+L+G                         IP S+S CS
Sbjct: 480  GRIPKHLTTSLCLFNFLILSNNSLQG------------------------AIPDSMSNCS 515

Query: 660  SLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNI 719
            SLQ L +SNN+LS +IP W+ +++ L  + + +N+  GP+P                   
Sbjct: 516  SLQLLDVSNNNLSPRIPGWIWSMSFLDFLDLSRNNFSGPLP------------------- 556

Query: 720  SGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLS 779
                P+      +  V+LS+N L G + +  F+N  TL+ LDLS+N+L G IP+ +  LS
Sbjct: 557  ----PTISTSSTLRYVYLSRNKLQGLITKA-FYNFSTLLTLDLSHNNLIGTIPEWIGSLS 611

Query: 780  QLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQ 839
            +L YL+L++N LEGE+PIQLC+L+ L L+DLS+N+L G+I SC             +SL 
Sbjct: 612  KLRYLLLSYNKLEGEIPIQLCKLDGLTLIDLSHNHLSGNILSCM------------TSLA 659

Query: 840  PFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQ 899
            PF     +     V+  +Q LE   FTTK+++  Y+G +  L SG+D SCN   G IPP+
Sbjct: 660  PFS---ALTDATIVETSQQYLE---FTTKNVSLIYRGSIVKLFSGIDFSCNNFTGKIPPE 713

Query: 900  IGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSV 959
            I NL+KI+ LNLSHN+L GPIP TFS L+ IESLDLS+NKL  +IP QL EL +L +FSV
Sbjct: 714  IENLSKIKALNLSHNSLIGPIPPTFSRLKEIESLDLSHNKLDGEIPPQLTELFSLEIFSV 773

Query: 960  AYNNLSGKIPERAAQFATFNESSYEGNPFLCGPPLPICISPTTMPEASPSNEGDN-NLID 1018
            A+NNLSGK P R AQFATF ES Y+ NPFLCG PLP     + +P  +  N  DN   ID
Sbjct: 774  AHNNLSGKTPARVAQFATFEESCYKDNPFLCGEPLPKICGASMLPSPTSMNNEDNGGFID 833

Query: 1019 MDIFFITFTTSYVIVIFGIVAVLYVNARWRRRWFYLVE 1056
            M++F+++F  +Y++V+  IVAVLY+N  WRR WF+  E
Sbjct: 834  MEVFYVSFGIAYIMVLVVIVAVLYINPYWRRAWFHFTE 871

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224073436|ref|XP_002304095.1| predicted protein [Populus trichocarpa] gi|222841527|gb|EEE79074.1| predicted protein [Populus trichocarpa]

 Score =  629 bits (1622), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 435/1094 (39%), Positives = 601/1094 (54%), Gaps = 132/1094 (12%)

Query: 11   MFVLLLIIFEGGW---SEGCLNHERFALLQLKLFFIDPYNY-LLDWVDDEGATDCCQWER 66
            M + +L+   G W     GCL  ER  LL+++   IDP  + L  WVD   +++CC+W+ 
Sbjct: 5    MLLAILLTLVGEWYGRCYGCLEEERIGLLEIQSL-IDPDGFSLRHWVD---SSNCCEWDG 60

Query: 67   VSCNNTMGRVVVLDLSQTHRGEYWYLNASLFTPFQQLESLDLRDNDIAGCVENEGLERLS 126
            + C+NT  RV+ L LS                          RD      V N  L    
Sbjct: 61   IECDNTTRRVIELSLSGA------------------------RDQSFGDWVLNASL---- 92

Query: 127  RLSNLKMLNLVGNLFNNSILSSLARLSSLTSLDLSANRLKGSIDIKGPKRLSRLNNLKVF 186
                                        L SL+L  N L G ++ +G + LS  +NL+  
Sbjct: 93   ----------------------FLPFKELQSLELRFNGLVGCLENEGFEVLS--SNLRNL 128

Query: 187  DLSGNLFNN--SILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDN 244
            DLS N FNN  SILS +  LS+L+SL L  N L GS        L  L+ LD+SYN  ++
Sbjct: 129  DLSDNRFNNDKSILSCMTGLSTLKSLDLSGNGLTGSGFEIISSHLEKLDNLDLSYNIFND 188

Query: 245  FEVPQACSGLRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTETVTTTTQGF 304
                   S LR LSYL  L +    G+ LL S                     TT    F
Sbjct: 189  ----SILSHLRGLSYLKSLNLS---GNMLLGS---------------------TTVNGTF 220

Query: 305  PHFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHL 364
             +  +L+ELY+D  R +L  +FLQ IG ++P ++ LS++   +        QG C L +L
Sbjct: 221  FNSSTLEELYLD--RTSLPINFLQNIG-ALPDLKVLSVAECDLHGTLPA--QGWCELKNL 275

Query: 365  QELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQ 424
            ++L ++ N+L GSLP CL N++SL++LDVS NQ  G+I+S PL +LTS+E L LS+N F+
Sbjct: 276  RQLDLSGNNLGGSLPDCLGNLSSLQLLDVSENQFTGNIASGPLTNLTSLEFLSLSNNLFE 335

Query: 425  IPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRD-GITFPKF 483
            +PIS++P  NHS LK F +ENN++  E     +L  P FQL    LS       +  P F
Sbjct: 336  VPISMKPFMNHSSLKFFSSENNKLVTEPAAFDNLI-PKFQLVFFRLSKTTEALNVKIPDF 394

Query: 484  LYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLD 543
            LY Q+D+  + LSH  +   FP+WLL+NNT+L QL L N+S VG  +L  H +  +  LD
Sbjct: 395  LYYQYDIRVLDLSHNNITAMFPSWLLKNNTRLEQLYLSNNSFVGTLQLQDHPYLNMTELD 454

Query: 544  VSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIP 603
            +S NN  G IP +I  I   +    ++ N   G IPS  GN++ L+ LDLSNNQL+    
Sbjct: 455  ISNNNMNGQIPKDICLIFPNMWSLRMANNGFTGCIPSCLGNISSLKILDLSNNQLSIVKL 514

Query: 604  EHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSL-Q 662
            E L     ++  L LSNNNL G + +  FN + L +L L GN+F G+I   L     +  
Sbjct: 515  EQLT----TIWFLKLSNNNLGGQLPTSVFNSSTLEYLYLHGNNFWGQISDFLLYGWKMWS 570

Query: 663  GLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGS 722
             L LS+N  SG +PRWL N T L  I + KN+ +GPI  +FC+L  L+ LD+S+NN+SG 
Sbjct: 571  TLDLSDNQFSGMLPRWLVNSTGLIAIDLSKNYFKGPILRDFCKLNQLEYLDLSENNLSGY 630

Query: 723  LPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLS 782
            +PSC+    I  VHLS+N L G L  G F+N  +L+ +DL  N+  G+ P+ +  LS LS
Sbjct: 631  IPSCFSPPQITHVHLSENRLSGPLTYG-FYNNSSLVTMDLRDNNFTGSFPNWIGNLSSLS 689

Query: 783  YLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNN-----GSS 837
             L+L  N+ +GE+P+QLC L QL +LD+S N L G +PSC  N T  E         G+ 
Sbjct: 690  VLLLRANHFDGELPVQLCLLEQLSILDVSQNQLSGPLPSCLGNLTFKESSQKTLADLGAD 749

Query: 838  L--QPFETSFV-IMGGMDVDPKKQILESF---------DFTTKSITYTYQGRVPSLLSGL 885
            +  +  E ++   MG   V+    + + F         +FTTK++ Y Y+G+  S +SG+
Sbjct: 750  VLSRSIEKAYYETMGPPLVESMYNLRKGFLLNFTEEVIEFTTKNMYYRYKGKTLSYMSGI 809

Query: 886  DLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIP 945
            DLS N  +G IPP+ G+L+KI +LNLSHNNL G IP+TFSNL+ IESLDLSYN L+  IP
Sbjct: 810  DLSNNNFVGAIPPEFGDLSKILSLNLSHNNLTGSIPATFSNLKQIESLDLSYNNLNGVIP 869

Query: 946  YQLVELNTLAVFSVAYNNLSGKIPERAAQFATFNESSYEGNPFLCGPPL----------- 994
             QL ++ TL VFSVA+NNLSG  PER  QF TF+ES YEGNPFLCGPPL           
Sbjct: 870  PQLTDITTLEVFSVAHNNLSGNTPERKYQFGTFDESCYEGNPFLCGPPLRNNCSEEAVPS 929

Query: 995  -PICISPTTMPEASPSNEGDNNLIDMDIFFITFTTSYVIVIFGIVAVLYVNARWRRRWFY 1053
             P+   P          +GD+  IDM+ F+I F   Y +V+  IV VLY++  WRRRW Y
Sbjct: 930  QPVPSQPVPSQPVPYDEQGDDGFIDMEFFYINFGVCYTVVVMIIVVVLYIDPYWRRRWSY 989

Query: 1054 LVEMWTTSCYYFVI 1067
             +E    +CYYFV+
Sbjct: 990  FIEDCIDTCYYFVV 1003

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359482735|ref|XP_003632821.1| PREDICTED: receptor-like protein 12-like [Vitis vinifera]

 Score =  627 bits (1617), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 425/1120 (37%), Positives = 606/1120 (54%), Gaps = 87/1120 (7%)

Query: 4    SKSKMVVMFVLLLIIFEGGWSEGCLNHERFALLQLKLFFI---DPYNYLL-DWVDDEGAT 59
            S S   +M+V +L++ +    +GC+  E+  LL+ K F     +  ++LL  W+D+   +
Sbjct: 3    SLSSKYLMWVFILLLVQICECKGCIEEEKMGLLEFKAFLKLNDEHADFLLPSWLDN-NTS 61

Query: 60   DCCQWERVSCNNTMGRVVVL---DLSQTHR-----------GEYWYLNASLFTPFQQLES 105
            +CC WERV CN T G+V  L   D+ Q               ++W LN SLF PF++L  
Sbjct: 62   ECCNWERVICNPTTGQVKKLFLNDIRQQQNFLEDNWYYYENAKFWLLNVSLFLPFEELHH 121

Query: 106  LDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILSSLARLSSLTSLDLSANRL 165
            L+L  N   G +ENEG + LS+L  L++LNL  N FN +I+  L+ L+SL +L +S N +
Sbjct: 122  LNLSANSFDGFIENEGFKSLSKLKKLEILNLGYNWFNKTIIKQLSGLTSLKTLVVSNNYI 181

Query: 166  KGSIDIKGPKRLSRLNNLKVFDLSGNLFNNSILSSLARLSSLRSLLLYDNRLEGSIDVKE 225
            +G    +G     +LN L+  DLS NLF   +   L  L+SLR L L  N   G++    
Sbjct: 182  EGLFPSQG---FCQLNKLQELDLSYNLFQGILPPCLNNLTSLRLLDLSSNLFSGNLSSPL 238

Query: 226  FDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNT 285
              +L++ E +D+SYN+   FE   + S     S L ++++G R+ +K             
Sbjct: 239  LPNLASQEYIDLSYNQ---FEGSFSFSSFANHSNLQVVKLG-RNNNKF------------ 282

Query: 286  LDLSYNNFTETVTTTTQGFPHFKSLKELYMDDARIA------LNTSFLQIIGESMPSIQY 339
                     E  T    G+     L+ L + +  +       L   F   + E+   +++
Sbjct: 283  ---------EVETEYPVGWVPLFQLEALMLSNLVVVDLSHNNLTRRFANWLLENNTRLEF 333

Query: 340  LSLSNSSVSNNSRTL--DQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQ 397
            L+L N+S+      L  +   C L  LQEL ++ N  +G LP CL N TSLR+LD+S+N 
Sbjct: 334  LALMNNSLMGQLLPLRPNTRFCQLNKLQELDLSYNLFQGILPPCLNNFTSLRLLDISANL 393

Query: 398  LIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKI------------FDAEN 445
              G++SS  L +LTS+E + LS N F+   S     NHS+L++            F  +N
Sbjct: 394  FSGNLSSPLLPNLTSLEYIDLSYNQFEGSFSFSSFANHSKLQVVILGRDNIKFKEFGRDN 453

Query: 446  NEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFP 505
             +   E  E      P FQL+ L LSS    G   P FL  Q  L  V LSH  +   FP
Sbjct: 454  KKFEVE-TEYPVGWVPLFQLKVLSLSSCKLTG-DLPGFLQYQFRLVGVDLSHNNLTGSFP 511

Query: 506  NWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLT 565
            NWLLENNT+L  L L N+SL+G   LP+  + ++  LD+S N   G +   +  ++  +T
Sbjct: 512  NWLLENNTRLEILLLRNNSLMGQL-LPLGPNTRINSLDISHNQLDGQLQENVAHMIPNIT 570

Query: 566  VFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEG 625
              N+S N  +G IPSS   +  LQ LDLS N  +GE+P+ L +    L  L LSNN   G
Sbjct: 571  SLNLSNNGFEGIIPSSIAELRALQILDLSTNNFSGEVPKQL-LAAKDLEILKLSNNKFHG 629

Query: 626  HMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVL 685
             +FSR+FNLT L+ L L  N F G +   +S+ S L  L +SNN +SG+IP W+GN+T+L
Sbjct: 630  EIFSRDFNLTGLLCLYLGNNQFTGTLSNVISRISWLWVLDVSNNYMSGEIPSWIGNMTLL 689

Query: 686  RHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQ 745
            R ++M  N+ +G +P E  QL+ ++ LD+S N +SGSLPS      +E +HL  NM  G 
Sbjct: 690  RTLVMGNNNFKGKLPPEISQLQRMEFLDVSQNALSGSLPSLKSMEYLEHLHLQGNMFTGL 749

Query: 746  LKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQL 805
            +    F N   L+ LD+  N L G+IP+ +  L +L  L+L  N L G +P  LC L ++
Sbjct: 750  IPR-DFLNSSNLLTLDIRENRLFGSIPNSISALLKLRILLLRGNLLSGFIPNHLCHLTEI 808

Query: 806  QLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSF-----VIMGGMDVD------ 854
             L+DLSNN+  G IP CF +    E     +    F   +     ++  G  V       
Sbjct: 809  SLMDLSNNSFSGPIPRCFGHIRFGETKKEDNVFGQFMYWYELNSDLVYAGYLVKHWEFLS 868

Query: 855  PKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHN 914
            P     +  +F TK+    Y+G +   +SGLDLSCN L G IP ++G L+ I+ LNLSHN
Sbjct: 869  PTYNEKDEVEFVTKNRHDFYRGGILEFMSGLDLSCNNLTGEIPHELGMLSWIRALNLSHN 928

Query: 915  NLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQ 974
             L G IP +FSNL  IESLDLSYNKL  +IP +LVELN L VFSVAYNN SG++P+  AQ
Sbjct: 929  QLNGSIPKSFSNLSQIESLDLSYNKLGGEIPLELVELNFLEVFSVAYNNFSGRVPDTKAQ 988

Query: 975  FATFNESSYEGNPFLCGPPLP----ICISPTTMPEASPSNEGDNNLIDMDIFFITFTTSY 1030
            F TF+E SYEGNPFLCG  L       I     P  S  +E     I+  +FF +FTTSY
Sbjct: 989  FGTFDERSYEGNPFLCGELLKRKCNTSIESPCAPSQSFESEAKWYDINHVVFFASFTTSY 1048

Query: 1031 VIVIFGIVAVLYVNARWRRRWFYLVEMWTTSCYYFVIDNL 1070
            ++++ G V +LY+N  WR RWF  +E    SCYYFV D+L
Sbjct: 1049 IMILLGFVIILYINPYWRHRWFNFIEECIYSCYYFVFDSL 1088

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224124490|ref|XP_002330036.1| predicted protein [Populus trichocarpa] gi|222871461|gb|EEF08592.1| predicted protein [Populus trichocarpa]

 Score =  615 bits (1587), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 395/953 (41%), Positives = 553/953 (58%), Gaps = 82/953 (8%)

Query: 155  LTSLDLSANRLKGSIDIKGPKRL-SRLNNLKVFDLSGNLFNNSILSSLARLSSLRSLLLY 213
            L +LDLS N+L G +  +G + L S L NLK   L+ N FN+SIL+SL+  S+L+SL L 
Sbjct: 66   LENLDLSGNQLVGGLKNQGFQVLASGLRNLKELYLNDNKFNDSILTSLSGFSTLKSLYLS 125

Query: 214  DNRLEGSIDVKEFDSLS----NLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGIRD 269
            +NR   +ID+K F  L+    NLE+LD+SYN++++                         
Sbjct: 126  NNRFTVTIDLKGFQVLASGLRNLEQLDLSYNKLND------------------------- 160

Query: 270  GSKLLQSMGSFPSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDARIALNTSFLQI 329
               +L S+  F +L  LDLS N FT +      G    + L+ LY+D       +  ++ 
Sbjct: 161  --SVLSSLSGFSTLKFLDLSNNRFTGST-----GLNGLRKLETLYLDSTDFK-ESILIES 212

Query: 330  IGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLR 389
            +G ++PS++ L    S  ++      +G C L +L+ L ++ N+L+G LP C  N++SL+
Sbjct: 213  LG-ALPSLKTLHARYSRFTH----FGKGWCELKNLEHLFLSGNNLKGVLPPCFGNLSSLQ 267

Query: 390  ILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEIN 449
            ILD+S NQL G+I+ S + HLT +E L +S+N+FQ+PIS     NHS LK F+ +NNE+ 
Sbjct: 268  ILDLSYNQLEGNIAFSHISHLTQLEYLSVSNNYFQVPISFGSFMNHSNLKFFECDNNELI 327

Query: 450  AEIIESHSLTTPNFQLQSLLLSSGYRDGIT--FPKFLYNQHDLEYVRLSHIK-MNEEFPN 506
            A    S     P F+L+    S+     +   FP FL +Q+DL +V LSH K + E FP+
Sbjct: 328  AA--PSFQPLVPKFRLRVFSASNCTPKPLEAGFPNFLQSQYDLVFVDLSHNKFVGESFPS 385

Query: 507  WLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTV 566
            WL ENNTKL +L L + S +GP +LP H    L+ +D+S N+  G I   I  I  RL  
Sbjct: 386  WLFENNTKLNRLYLRDTSFIGPLQLPQHPTPNLQTVDMSGNSIHGQIARNICSIFPRLKN 445

Query: 567  FNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEH-LAMGCVSLRSLALSNNNLEG 625
            F ++ N+L G IP  FGNM+ L++LDLSNN ++ E+ EH L     SL SL LSNNN +G
Sbjct: 446  FMMANNSLTGCIPPCFGNMSSLEYLDLSNNHMSCELLEHNLPTVGSSLWSLKLSNNNFKG 505

Query: 626  HMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVL 685
             +    FN+T+L +L L+GN F G++  + S  SS     +SNN LSG +PR +GN ++ 
Sbjct: 506  RLPLSVFNMTSLEYLFLDGNKFAGQVSGTFSLASSFSWFDISNNLLSGMLPRGIGNSSIY 565

Query: 686  RH--IIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLH 743
            R   I + +NH EG IP E+     L+ LD+S+NN+SGSLP  +    +  VHL  N L 
Sbjct: 566  RFQAIDLSRNHFEGTIPKEYFNSYWLEFLDLSENNLSGSLPLGFLAPHLRHVHLYGNRLT 625

Query: 744  GQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLN 803
            G L    F+N  +L+ LDL YN+L G IP+ +  LS+LS L+L  N   GE+P+QLC L 
Sbjct: 626  GPLPNA-FYNISSLVTLDLGYNNLTGPIPNWIASLSELSILLLKSNQFNGELPVQLCLLR 684

Query: 804  QLQLLDLSNNNLHGHIPSCFDNTTLHERY------------NNGSSLQPFETSFVIMGGM 851
            +L +LDLS NN  G +PSC  N    E Y            ++GS  + F +    +GG 
Sbjct: 685  KLSILDLSENNFSGLLPSCLSNLDFTESYEKTLVHTSTESRDDGSRKEIFAS----IGGR 740

Query: 852  DVD------------PKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQ 899
            ++             P+  +  S + T+K   YTY+G +   +S +DLSCNR  G IP +
Sbjct: 741  ELGNEGFYLFDKILWPEISVKISVELTSKKNFYTYEGDILRYMSVMDLSCNRFTGEIPTE 800

Query: 900  IGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSV 959
             GNL+ I  LNLS NN  G IP +FSNL+ IESLDLS+N L+ +IP QLVEL  LAVF+V
Sbjct: 801  WGNLSGIYALNLSQNNFNGLIPPSFSNLKQIESLDLSHNNLNGRIPAQLVELTFLAVFNV 860

Query: 960  AYNNLSGKIPERAAQFATFNESSYEGNPFLCGPPLPICISPTTMPEASPSNE--GDNNLI 1017
            +YN LSG+ PE   QFATF+ESSY+GNP LCGPPL      T  P A   N+  GD   I
Sbjct: 861  SYNKLSGRTPEMKNQFATFDESSYKGNPLLCGPPLQNSCDKTESPSARVPNDSNGDGGFI 920

Query: 1018 DMDIFFITFTTSYVIVIFGIVAVLYVNARWRRRWFYLVEMWTTSCYYFVIDNL 1070
            DM  F+ +F   Y+IV+  I AVL +N  WRRRWFY +E    +CY F+  N 
Sbjct: 921  DMYSFYASFGVCYIIVVLTIAAVLCINPDWRRRWFYFIEECMDTCYCFLAINF 973

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	1077
TAIR|locus:2037313	1000	RLP13 "AT1G74170" [Arabidopsis	0.819	0.883	0.332	1.6e-116
TAIR|locus:2025012	1083	RLP1 "AT1G07390" [Arabidopsis	0.594	0.590	0.364	2.1e-113
TAIR|locus:2155909	908	RLP56 "AT5G49290" [Arabidopsis	0.524	0.622	0.344	2.4e-108
TAIR|locus:2101943	891	RLP45 "AT3G53240" [Arabidopsis	0.751	0.907	0.322	2.1e-100
TAIR|locus:2037308	976	RLP14 "AT1G74180" [Arabidopsis	0.765	0.844	0.326	1.4e-96
TAIR|locus:2040075	935	RLP21 "AT2G25470" [Arabidopsis	0.753	0.868	0.315	8.6e-88
TAIR|locus:2019662	965	RLP15 "AT1G74190" [Arabidopsis	0.569	0.635	0.310	2.8e-73
TAIR|locus:2170483	1173	FLS2 "FLAGELLIN-SENSITIVE 2" [	0.566	0.520	0.290	3.7e-58
TAIR|locus:2120362	1249	GSO1 "GASSHO1" [Arabidopsis th	0.569	0.490	0.283	3.2e-46
TAIR|locus:2156349	1252	GSO2 "GASSHO 2" [Arabidopsis t	0.698	0.600	0.266	4.8e-51

TAIR|locus:2037313 RLP13 "AT1G74170" [Arabidopsis thaliana (taxid:3702)]

 Score = 1148 (409.2 bits), Expect = 1.6e-116, P = 1.6e-116
 Identities = 311/934 (33%), Positives = 457/934 (48%)

Query:   170 DIKGPKRLSRLNNLKVFDLSGNLFNNXXXXXXXXXXXXXXXXXYDNRLEGSIDVKEFDSL 229
             D++G K LSRL NL++ DLS + FNN                   N +     VKEF  L
Sbjct:    61 DVEGYKSLSRLRNLEILDLSSHRFNNSIFPFLNAATSLTTLFLTYNNMHSPFLVKEFKDL 120

Query:   230 SNLEELDMSYNEIDNFEVP-QACSGLRKLSYLHLLRVGIR-DGSKLLQSMGSFPSLNTLD 287
             +NLE LD+  N   N  +P Q  + LR+   L +L +      S++   + S  SL +L 
Sbjct:   121 TNLEHLDLRGNRF-NGSIPTQDYNSLRRFRKLEILDLSDNLFNSRIFPFLNSATSLKSLS 179

Query:   288 LSYNNFXXXXXXXXQGFPHFKSLKEL----YMDDARIALNTSF-------LQIIGESMPS 336
             L  NN           FP  K L++L     +D +R   N S        L+ +     S
Sbjct:   180 LWGNNMGGP-------FPA-KELRDLTNVELLDLSRNRFNGSIPVRALFALRKLKALDLS 231

Query:   337 IQYXXXXXXXXXXXXRTLD-QGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVXX 395
                            +T    G CP  +++EL +++N L G  P CL ++T LR+LD+  
Sbjct:   232 DNEFSSSVELQGKFAKTKPLSGTCPWKNMEELKLSNNKLAGQFPLCLTSLTGLRVLDLSS 291

Query:   396 XXXXXXXXXXPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDXXXXXXXXXXXXS 455
                        L +L S+E L L  N+F+   SL  L N S+LK+               
Sbjct:   292 NQLTGNVPSA-LANLESLEYLSLFGNNFEGFFSLGLLANLSKLKVLRLDSQSNSLEVEFE 350

Query:   456 HSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKL 515
              S   P FQL  + L S   + +  P FL +Q DL +V LS  +++  FP+WLLENNTKL
Sbjct:   351 TSWK-PKFQLVVIALRSCNLEKV--PHFLLHQKDLHHVDLSDNQIHGNFPSWLLENNTKL 407

Query:   516 RQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLE-IGDILSRLTVFNISMNAL 574
               L L N+S    F+LP  +H  L  L+VS N F  H+ L+  G IL  L   N++ N  
Sbjct:   408 EVLLLQNNSFTS-FQLPKSAHNLL-FLNVSVNKFN-HLFLQNFGWILPHLVCVNLAYNGF 464

Query:   575 DGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVXXXXXXXXXXXXEGHMFSRNFNL 634
              G++PSS  NM  ++FLDLS+N+  G++P     GC              G +F    N 
Sbjct:   465 QGNLPSSLDNMKSIEFLDLSHNRFHGKLPRRFLKGCYNLTILKLSHNKLSGEVFPEAANF 524

Query:   635 TNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNH 694
             T L  + ++ N F G I +      SL  L +SNN L+G IP W+G    L  + +  N 
Sbjct:   525 TRLWVMSMDNNLFTGNIGKGFRSLPSLNVLDISNNKLTGVIPSWIGERQGLFALQLSNNM 584

Query:   695 IEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHL-SKNMLHGQLKEGTFFN 753
             +EG IP     +  LQ+LD+S N +SG +P     +    V L   N L G + +    N
Sbjct:   585 LEGEIPTSLFNISYLQLLDLSSNRLSGDIPPHVSSIYHGAVLLLQNNNLSGVIPDTLLLN 644

Query:   754 CLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIXXXXXXXXXXXXXXXX 813
                +++LDL  N L+GN+P+ ++    +S L+L  NN  G++P                 
Sbjct:   645 ---VIVLDLRNNRLSGNLPEFIN-TQNISILLLRGNNFTGQIPHQFCSLSNIQLLDLSNN 700

Query:   814 XXHGHIPSCFDNTT--LHE-----RYNN----GSSLQP--FETSFVIMGGMDVDPKKQIL 860
               +G IPSC  NT+  L +     RY+     G++  P  FE S +++   ++  +    
Sbjct:   701 KFNGSIPSCLSNTSFGLRKGDDSYRYDVPSRFGTAKDPVYFE-SLLMIDEFNMVNETNSQ 759

Query:   861 ESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPI 920
                +F TK     Y G    LL G+DLS N L G IP ++G L +++ LNLSHNNL+G I
Sbjct:   760 TKIEFATKHRYDAYMGGNLKLLFGMDLSENELSGEIPVELGGLVELEALNLSHNNLSGVI 819

Query:   921 PSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQFATFNE 980
               +FS L+N+ESLDLS+N+L   IP QL ++ +LAVF+V+YNNLSG +P+   QF TF  
Sbjct:   820 LESFSGLKNVESLDLSFNRLQGPIPLQLTDMISLAVFNVSYNNLSGIVPQ-GRQFNTFET 878

Query:   981 SSYEGNPFLCGPPLPICISPTTMPEASPSNEGDNNLIDMDIFFITFTTSYVIVIFGIVAV 1040
              SY GNP LCG  + I  +           E D + +DM+ F+ +F  +YV ++ GI+A 
Sbjct:   879 QSYFGNPLLCGKSIDISCASNNFHPTDNGVEADESTVDMESFYWSFVAAYVTILLGILAS 938

Query:  1041 LYVNARWRRRWFYLVEMWTTSCYYFVIDNLIPTR 1074
             L  ++ W R WFY+V+ +       +  N   T+
Sbjct:   939 LSFDSPWSRAWFYIVDAFVLKVRNMLWQNTAGTK 972

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2025012 RLP1 "AT1G07390" [Arabidopsis thaliana (taxid:3702)]

 Score = 948 (338.8 bits), Expect = 2.1e-113, Sum P(2) = 2.1e-113
 Identities = 245/672 (36%), Positives = 349/672 (51%)

Query:   357 GLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVXXXXXXXXXXXXPLIHLTSI-ED 415
             G+C L+ L+EL ++ N L  SLP+CL N+T LR LD+             +  L S+ E 
Sbjct:   353 GICRLMKLRELDLSSNALT-SLPYCLGNLTHLRTLDLSNNQLNGNLSSF-VSGLPSVLEY 410

Query:   416 LILSDNHFQIPISLEPLFNHSRLKIFDXXXXXXXXXXXXSHSLTTPNFQLQSLLLSSGYR 475
             L L DN+F        L N +RL +F               S   P FQL+ L LS+   
Sbjct:   411 LSLLDNNFDGSFLFNSLVNQTRLTVFKLSSKVGVIQVQTESSWA-PLFQLKMLYLSNCSL 469

Query:   476 DGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHS 535
              G T   FL +Q DL +V LSH K+   FP WL++NNT+L+ + L  +SL    +LPI  
Sbjct:   470 -GSTMLGFLVHQRDLCFVDLSHNKLTGTFPTWLVKNNTRLQTILLSGNSLT-KLQLPILV 527

Query:   536 HKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSN 595
             H  L++LD+S N     I  +IG +   L   N S N   G+IPSS G M  LQ LD+S+
Sbjct:   528 HG-LQVLDISSNMIYDSIQEDIGMVFPNLRFMNFSSNHFQGTIPSSIGEMKSLQVLDMSS 586

Query:   596 NQLTGEIPEHLAMGCVXXXXXXXXXXXXEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSL 655
             N L G++P     GC             +G +FS++ NLT L+ L L+GN+F G + + L
Sbjct:   587 NGLYGQLPIMFLSGCYSLRVLKLSNNQLQGKIFSKHANLTGLVGLFLDGNNFTGSLEEGL 646

Query:   656 SKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDIS 715
              K  +L  L +S+N  SG +P W+G ++ L ++ M  N ++GP P    Q   ++++DIS
Sbjct:   647 LKSKNLTLLDISDNRFSGMLPLWIGRISRLSYLYMSGNQLKGPFPF-LRQSPWVEVMDIS 705

Query:   716 DNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRV 775
              N+ SGS+P   +F  + ++ L  N   G L  G  F    L +LDL  N+ +G I + +
Sbjct:   706 HNSFSGSIPRNVNFPSLRELRLQNNEFTG-LVPGNLFKAAGLEVLDLRNNNFSGKILNTI 764

Query:   776 DGLSQLSYLILAHNNLEGEVPIXXXXXXXXXXXXXXXXXXHGHIPSCFDNTTLHERYNNG 835
             D  S+L  L+L +N+ +  +P                    G IPSCF   +     N+ 
Sbjct:   765 DQTSKLRILLLRNNSFQTYIPGKICQLSEVGLLDLSHNQFRGPIPSCFSKMSFGAEQNDR 824

Query:   836 --SSLQPFETSFVIM------GG-MDVD--------PKKQILESFDFTTKSITYTYQGRV 878
               S +  F+ S++        G  +++D        PK   +   DF TKS    YQG +
Sbjct:   825 TMSLVADFDFSYITFLPHCQYGSHLNLDDGVRNGYQPKPATV--VDFLTKSRYEAYQGDI 882

Query:   879 PSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYN 938
                + GLDLS N L G IP +IG+L  I++LNLS N L G IP + S L+ +ESLDLS N
Sbjct:   883 LRYMHGLDLSSNELSGEIPIEIGDLQNIRSLNLSSNRLTGSIPDSISKLKGLESLDLSNN 942

Query:   939 KLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQFATFNESSYEGNPFLCGPPL-PIC 997
             KL   IP  L +LN+L   +++YNNLSG+IP +     TF+E SY GN  LCG P    C
Sbjct:   943 KLDGSIPPALADLNSLGYLNISYNNLSGEIPFKG-HLVTFDERSYIGNAHLCGLPTNKNC 1001

Query:   998 ISPTTMPEASPS 1009
             IS   +PE  PS
Sbjct:  1002 ISQR-VPEP-PS 1011

GO:0005575 "cellular_component" evidence=ND

GO:0007165 "signal transduction" evidence=IC

GO:0006457 "protein folding" evidence=RCA

GO:0006857 "oligopeptide transport" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

TAIR|locus:2155909 RLP56 "AT5G49290" [Arabidopsis thaliana (taxid:3702)]

 Score = 785 (281.4 bits), Expect = 2.4e-108, Sum P(2) = 2.4e-108
 Identities = 201/584 (34%), Positives = 298/584 (51%)

Query:   481 PKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLR 540
             P FL  Q +L  V LS  +++   P WLLENN +L  L L N+S    F++P   H  L+
Sbjct:   335 PNFLMYQKNLHVVDLSGNRISGIIPTWLLENNPELEVLQLKNNSFT-IFQMPTSVHN-LQ 392

Query:   541 LLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTG 600
             +LD S+NN  G  P   G +L  L   N S N   G+ PSS G M  + FLDLS N L+G
Sbjct:   393 VLDFSENNIGGLFPDNFGRVLPNLVHMNGSNNGFQGNFPSSMGEMYNISFLDLSYNNLSG 452

Query:   601 EIPEHLAMGCVXXXXXXXXXXXXEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSS 660
             E+P+     C              GH   R  N T+LI L++  N F G+I   L     
Sbjct:   453 ELPQSFVSSCFSLSILQLSHNKFSGHFLPRQTNFTSLIVLRINNNLFTGKIGVGLLTLVD 512

Query:   661 LQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNIS 720
             L  L +SNN L G++P  L     L  + +  N + G +P     + +  +L + +NN +
Sbjct:   513 LCILDMSNNFLEGELPPLLLVFEYLNFLDLSGNLLSGALP---SHVSLDNVLFLHNNNFT 569

Query:   721 GSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQ 780
             G +P  +    I+ + L  N L G + +  F +   +  L L  N L G IP  +   S+
Sbjct:   570 GPIPDTF-LGSIQILDLRNNKLSGNIPQ--FVDTQDISFLLLRGNSLTGYIPSTLCEFSK 626

Query:   781 LSYLILAHNNLEGEVPIXXXXXXXXXXXXXXXXXXHGHIPSCFDNTTLHERYNNGSSLQP 840
             +  L L+ N L G +P                   + ++    ++  L   Y +   ++ 
Sbjct:   627 MRLLDLSDNKLNGFIP--SCFNNLSFGLARKEEITNYYVAVALESFYLGF-YKSTFVVEN 683

Query:   841 FETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQI 900
             F   +      ++D K    + +D    +  ++ +G + S+  GLDLS N L G IP ++
Sbjct:   684 FRLDY--SNYFEIDVKFATKQRYDSYIGAFQFS-EGTLNSMY-GLDLSSNELSGVIPAEL 739

Query:   901 GNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVA 960
             G+L K++ LNLSHN L+  IP +FS L++IESLDLSYN L   IP+QL  L +LA+F+V+
Sbjct:   740 GDLFKLRALNLSHNFLSSHIPDSFSKLQDIESLDLSYNMLQGSIPHQLTNLTSLAIFNVS 799

Query:   961 YNNLSGKIPERAAQFATFNESSYEGNPFLCGPPLPI-CISPTTMPE-ASPSNEGDNNL-I 1017
             YNNLSG IP+   QF TF+E+SY GNP LCGPP    C +     E A+   E D  + I
Sbjct:   800 YNNLSGIIPQ-GKQFNTFDENSYLGNPLLCGPPTDTSCETKKNSEENANGGEEDDKEVAI 858

Query:  1018 DMDIFFITFTTSYVIVIFGIVAVLYVNARWRRRWFYLVEMWTTS 1061
             DM +F+ +   +YV  + GI+ ++ V+  WRR W  LV+ +  S
Sbjct:   859 DMLVFYWSTAGTYVTALIGILVLMCVDCSWRRAWLRLVDAFIAS 902

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2101943 RLP45 "AT3G53240" [Arabidopsis thaliana (taxid:3702)]

 Score = 996 (355.7 bits), Expect = 2.1e-100, P = 2.1e-100
 Identities = 276/855 (32%), Positives = 422/855 (49%)

Query:   226 FDSLSNLEELDMSYNEIDN-FEVPQACSGLRKLSYLHLLRVGIRD-GSKLLQSMGSFPSL 283
             F     L+ L++S       F+  +   GL  L  L  L +G+    + +L  +    SL
Sbjct:    46 FYPFEELQSLNLSSGYFKGWFDERKGGKGLGSLRNLETLDLGVNFYDTSVLPYLNEAVSL 105

Query:   284 NTLDLSYNNFXXXXXXXXQGFPHFKSLKELYMDDARIALNTSFLQIIGESMPSIQYXXXX 343
              TL L  N F         GFP  + +    ++   +  N    Q+  + + +++     
Sbjct:   106 KTLILHDNLFKG-------GFPVQELINLTSLEVLDLKFNKFSGQLPTQELTNLRNLRAL 158

Query:   344 XXXXXXXXRTLD-QGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVXXXXXXXXX 402
                      +L  QG+C L  LQEL ++ N   G +P C +  + LR+LD+         
Sbjct:   159 DLSNNKFSGSLQKQGICRLEQLQELRLSRNRFEGEIPLCFSRFSKLRVLDLSSNHLSGKI 218

Query:   403 XXXPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDXXXXXXXXXXXXSHSLTTPN 462
                 +    S+E L L DN F+   SL  +   + LK+F             ++      
Sbjct:   219 PYF-ISDFKSMEYLSLLDNDFEGLFSLGLITELTELKVFKLSSRSGMLQIVETNVSGGLQ 277

Query:   463 FQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVN 522
              QL S++LS      I  P FL+ Q +L  + LS+  ++  FP WLLENNT+L+ L L N
Sbjct:   278 SQLSSIMLSHCNLGKI--PGFLWYQQELRVIDLSNNILSGVFPTWLLENNTELQALLLQN 335

Query:   523 DSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSF 582
             +S      LP  + ++L++LD+S NNF   +P ++G IL+ L   N+S N   G++PSS 
Sbjct:   336 NSFK-TLTLP-RTMRRLQILDLSVNNFNNQLPKDVGLILASLRHLNLSNNEFLGNMPSSM 393

Query:   583 GNMNFLQFLDLSNNQLTGEIPEHLAMGCVXXXXXXXXXXXXEGHMFSRNFNLTNLIWLQL 642
               M  ++F+DLS N  +G++P +L  GC              G +  ++ + T+LI L +
Sbjct:   394 ARMENIEFMDLSYNNFSGKLPRNLFTGCYSLSWLKLSHNRFSGPIIRKSSDETSLITLIM 453

Query:   643 EGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGN--LTVLRHIIMPKNHIEGPIP 700
             + N F G+IP++L     L  + LSNN L+G IPRWLGN  L VLR   +  N ++G IP
Sbjct:   454 DNNMFTGKIPRTLLNLRMLSVIDLSNNLLTGTIPRWLGNFFLEVLR---ISNNRLQGAIP 510

Query:   701 LEFCQLRILQILDISDNNISGSLP--SCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLM 758
                  +  L +LD+S N +SGSLP  S  D+  I  +H   N L G + +  ++    L 
Sbjct:   511 PSLFNIPYLWLLDLSGNFLSGSLPLRSSSDYGYILDLH--NNNLTGSIPDTLWYG---LR 565

Query:   759 ILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIXXXXXXXXXXXXXXXXXXHGH 818
             +LDL  N L+GNIP        +S ++L  NNL G++P+                  +  
Sbjct:   566 LLDLRNNKLSGNIP-LFRSTPSISVVLLRENNLTGKIPVELCGLSNVRMLDFAHNRLNES 624

Query:   819 IPSCFDNTTL----HERYNNG---SSL---------QPFETSFVIMGGMDVDPKKQILES 862
             IPSC  N +     H   ++    +SL         + +  S ++     +D        
Sbjct:   625 IPSCVTNLSFGSGGHSNADSDWYPASLLSNFMEIYTEVYYESLIVSDRFSLDYSVDFNVQ 684

Query:   863 FDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPS 922
              +F  K     Y     + + GLDLS N L G+IP ++G+L ++++LNLS N+L+G IP 
Sbjct:   685 VEFAVKQRYDLYMRGTLNQMFGLDLSSNELSGNIPEELGDLKRVRSLNLSRNSLSGSIPG 744

Query:   923 TFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQFATFNESS 982
             +FSNLR+IESLDLS+NKL   IP QL  L +L VF+V+YNNLSG IP+   QF TF E S
Sbjct:   745 SFSNLRSIESLDLSFNKLHGTIPSQLTLLQSLVVFNVSYNNLSGVIPQ-GKQFNTFGEKS 803

Query:   983 YEGNPFLCGPPLPICISPTTMPEASPSNEGDNN-LIDMDIFFITFTTSYVIVIFGIVAVL 1041
             Y GN  LCG P       TT+       + D + L+D+ + + +  T+YV V+ G +  L
Sbjct:   804 YLGNFLLCGSPTKRSCGGTTISSGKEYEDDDESGLLDIVVLWWSLGTTYVTVMMGFLVFL 863

Query:  1042 YVNARWRRRWFYLVE 1056
               ++ WRR WF LV+
Sbjct:   864 CFDSPWRRAWFCLVD 878

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2037308 RLP14 "AT1G74180" [Arabidopsis thaliana (taxid:3702)]

 Score = 960 (343.0 bits), Expect = 1.4e-96, P = 1.4e-96
 Identities = 286/875 (32%), Positives = 414/875 (47%)

Query:   215 NRLEGSID-VKEFDSLS---NLEELDMSYNEIDNFEVP--QACSGLRKLSYLHLLRVGIR 268
             N   G  D V+ ++SL    NLE LD+S N  +N   P   A + L  L ++    +G  
Sbjct:   119 NEFNGLFDDVEGYESLRRLRNLEILDLSSNSFNNSIFPFLNAATSLTTL-FIQSNYIG-- 175

Query:   269 DGSKLLQSMGSFPSLNTLDLSYNNFXXXXXXXXQGFPHFKSLKELYMDDARIALNTSFLQ 328
              G   ++ + +   L  LDLS + +          F H + LK L +     A + S L 
Sbjct:   176 -GPLPIKELKNLTKLELLDLSRSGYNGSIPE----FTHLEKLKALDLS----ANDFSSLV 226

Query:   329 IIGESMPSIQYXXXXXXXXXXXXRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSL 388
              + E                       +  C + +L++L +  N   G LP CL N+  L
Sbjct:   227 ELQELKVLTNLEVLGLAWNHLDGPIPKEVFCEMKNLRQLDLRGNYFEGQLPVCLGNLNKL 286

Query:   389 RILDVXXXXXXXXXXXXPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDXXXXXX 448
             R+LD+                L S+E L LSDN+F+   SL PL N ++LK+F       
Sbjct:   287 RVLDLSSNQLSGNLPAS-FNSLESLEYLSLSDNNFEGFFSLNPLANLTKLKVF-RLSSTS 344

Query:   449 XXXXXXSHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWL 508
                   + S   P FQL    L       I  P FL  Q +L  V LS  +++ + P WL
Sbjct:   345 EMLQVETESNWLPKFQLTVAALPFCSLGKI--PNFLVYQTNLRLVDLSSNRLSGDIPTWL 402

Query:   509 LENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFN 568
             LENN +L+ L L N+S    F++P   HK L++LD S N+  G +P  IG +L RL   N
Sbjct:   403 LENNPELKVLQLKNNSFT-IFQIPTIVHK-LQVLDFSANDITGVLPDNIGHVLPRLLHMN 460

Query:   569 ISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVXXXXXXXXXXXXEGHMF 628
              S N   G++PSS G MN + FLDLS N  +GE+P  L  GC              G + 
Sbjct:   461 GSHNGFQGNLPSSMGEMNDISFLDLSYNNFSGELPRSLLTGCFSLITLQLSHNSFSGPIL 520

Query:   629 SRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLG-NLTVLRH 687
                  LT+LI L++  N F GEI   L    +L     SNN L+G I   +  + + L  
Sbjct:   521 PIQTRLTSLIVLRMHNNLFTGEIGVGLRTLVNLSIFDASNNRLTGLISSSIPPDSSHLIM 580

Query:   688 IIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCY-DFVCIEQVHLSKNMLHGQL 746
             +++  N +EG +P     +  L  LD+S N +SG LPS   + +   ++ L  N   G L
Sbjct:   581 LLLSNNLLEGTLPPSLLAIHHLNFLDLSGNLLSGDLPSSVVNSMYGIKIFLHNNSFTGPL 640

Query:   747 KEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIXXXXXXXXX 806
                   N     ILDL  N L+G+IP  V+   ++  L+L  NNL G +P          
Sbjct:   641 PVTLLENAY---ILDLRNNKLSGSIPQFVN-TGKMITLLLRGNNLTGSIPRKLCDLTSIR 696

Query:   807 XXXXXXXXXHGHIPSCFDN--TTLHE---------RYNNGSSLQP--FETSFVIMGGMDV 853
                      +G IP C ++  T L E           + G SLQ   + ++F++   M  
Sbjct:   697 LLDLSDNKLNGVIPPCLNHLSTELGEGIGLSGFSQEISFGDSLQMEFYRSTFLVDEFMLY 756

Query:   854 DPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSH 913
                  ++   +F  K    ++ G     + GLDLS N L G IP ++G+L+K++ LNLS 
Sbjct:   757 YDSTYMIVEIEFAAKQRYDSFSGGTLDYMYGLDLSSNELSGVIPAELGDLSKLRALNLSR 816

Query:   914 NNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERAA 973
             N L+  IP+ FS L++IESLDLSYN L   IP+QL  L +LAVF+V++NNLSG IP+   
Sbjct:   817 NLLSSSIPANFSKLKDIESLDLSYNMLQGNIPHQLTNLTSLAVFNVSFNNLSGIIPQ-GG 875

Query:   974 QFATFNESSYEGNPFLCGPPLP-ICISPTTMPEASPSNE------GDNNLIDMDIFFITF 1026
             QF TFN++SY GNP LCG P    C       EA    E       D   IDM + + T 
Sbjct:   876 QFNTFNDNSYLGNPLLCGTPTDRSCEGKKNTKEADNGGEEEEEDDDDEAAIDMVVLYWTT 935

Query:  1027 TTSYVIVIFGIVAVLYVNARWRRRWFYLVEMWTTS 1061
              ++Y I + GI+ ++  +  WRR W  +V+ +  S
Sbjct:   936 GSTYAIALIGILVLMCFDCPWRRTWLCIVDAFIAS 970

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2040075 RLP21 "AT2G25470" [Arabidopsis thaliana (taxid:3702)]

 Score = 877 (313.8 bits), Expect = 8.6e-88, P = 8.6e-88
 Identities = 272/863 (31%), Positives = 383/863 (44%)

Query:   226 FDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNT 285
             F+ + +L      YNE + F       G R LS L  L+  I D S    +  +FP LN 
Sbjct:    91 FEEVRSLNLSTEGYNEFNGFF--DDVEGYRSLSGLRNLK--IMDLSTNYFNYSTFPFLNA 146

Query:   286 LDLSYNNFXXXXXXXXQGFP--HFKSLKELYMDDARI-ALNTSFLQIIGESMPSIQYXXX 342
                S              FP    K L  L + D R   LN S  ++I   +  ++    
Sbjct:   147 AT-SLTTLILTYNEMDGPFPIKGLKDLTNLELLDLRANKLNGSMQELI--HLKKLKALDL 203

Query:   343 XXXXXXXXXRTLDQGLCPLVHLQELHMADNDLRGSLPW-CLANMTSLRILDVXXXXXXXX 401
                          Q L  L++L+ L +A N + G +P      + +LR LD+        
Sbjct:   204 SSNKFSSSMEL--QELQNLINLEVLGLAQNHVDGPIPIEVFCKLKNLRDLDLKGNHFVGQ 261

Query:   402 XXXXPLIHLTSIEDLILSDNHFQ--IPISLEPLFNHSRLKIFDXXXXXXXXXXXXSHSLT 459
                  L  L  +  L LS N     +P S   L +   L + D            ++ LT
Sbjct:   262 IPLC-LGSLKKLRVLDLSSNQLSGDLPSSFSSLESLEYLSLSDNNFDGSFSLNPLTN-LT 319

Query:   460 TPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLS 519
                F +     S         P FL  Q  L  V LS   ++   P WLL NN +L  L 
Sbjct:   320 NLKFVVVLRFCSLE-----KIPSFLLYQKKLRLVDLSSNNLSGNIPTWLLTNNPELEVLQ 374

Query:   520 LVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIP 579
             L N+S    F +P   H  L++ D S NN  G  P ++   L  L   N S N   G  P
Sbjct:   375 LQNNSFT-IFPIPTMVHN-LQIFDFSANNI-GKFPDKMDHALPNLVRLNGSNNGFQGYFP 431

Query:   580 SSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVXXXXXXXXXXXXEGHMFSRNFNLTNLIW 639
             +S G M  + FLDLS N  +G++P     GCV             G    R  N  +L  
Sbjct:   432 TSIGEMKNISFLDLSYNNFSGKLPRSFVTGCVSIMFLKLSHNKFSGRFLPRETNFPSLDV 491

Query:   640 LQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPI 699
             L+++ N F G I   LS  + L+ L +SNN LSG IPRWL     L ++++  N +EG I
Sbjct:   492 LRMDNNLFTGNIGGGLSNSTMLRILDMSNNGLSGAIPRWLFEFPYLDYVLISNNFLEGTI 551

Query:   700 PLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMI 759
             P     +  L  LD+S N  SG+LPS  D      + L  N   G + + T     ++ I
Sbjct:   552 PPSLLGMPFLSFLDLSGNQFSGALPSHVDSELGIYMFLHNNNFTGPIPD-TLLK--SVQI 608

Query:   760 LDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIXXXXXXXXXXXXXXXXXXHGHI 819
             LDL  N L+G+IP + D    ++ L+L  NNL G +P                   +G I
Sbjct:   609 LDLRNNKLSGSIP-QFDDTQSINILLLKGNNLTGSIPRELCDLSNVRLLDLSDNKLNGVI 667

Query:   820 PSCFDNTTLHERYNNGSSLQ--P--FETSF--------VIMGGMDVDPKKQILESFDFTT 867
             PSC  N +      +  +L   P   +TS          ++  ++VD          F  
Sbjct:   668 PSCLSNLSFGRLQEDAMALNIPPSFLQTSLEMELYKSTFLVDKIEVDRSTYQETEIKFAA 727

Query:   868 KSITYTYQGR------VPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIP 921
             K    +Y GR      +  L+ G+DLS N L G IP ++G+L K++TLNLSHN+L G IP
Sbjct:   728 KQRYDSYSGRSEFSEGILRLMYGMDLSNNELSGVIPTELGDLLKLRTLNLSHNSLLGSIP 787

Query:   922 STFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQFATFNES 981
             S+FS L ++ESLDLS+N L   IP  L  L +LAVF V+ NNLSG IP+   QF TF E 
Sbjct:   788 SSFSKLIDVESLDLSHNMLQGSIPQLLSSLTSLAVFDVSSNNLSGIIPQ-GRQFNTFEEE 846

Query:   982 SYEGNPFLCGPPLPICISPTTMPEASPSN---EGDNNLIDMDIFFITFTTSYVIVIFGIV 1038
             SY GNP LCGPP          PE + +    E D   IDM +F+ +  + YV  + G++
Sbjct:   847 SYLGNPLLCGPPTSRSCETNKSPEEADNGQEEEDDKAAIDMMVFYFSTASIYVTALIGVL 906

Query:  1039 AVLYVNARWRRRWFYLVEMWTTS 1061
              ++  +  WRR W  +V+ +  S
Sbjct:   907 VLMCFDCPWRRAWLRIVDAFIAS 929

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2019662 RLP15 "AT1G74190" [Arabidopsis thaliana (taxid:3702)]

 Score = 740 (265.6 bits), Expect = 2.8e-73, P = 2.8e-73
 Identities = 197/634 (31%), Positives = 297/634 (46%)

Query:   353 TLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVXXXXXXXXXXXXPLIHLTS 412
             ++  G+C L ++QEL ++ N L G LP CL ++T LR+LD+             L  L S
Sbjct:   235 SIQSGICELNNMQELDLSQNKLVGHLPSCLTSLTGLRVLDLSSNKLTGTVPSS-LGSLQS 293

Query:   413 IEDLILSDNHFQIPISLEPLFNHSRLKIFDXXXXXXXXXXXXSHSLTTPNFQLQSLLLSS 472
             +E L L DN F+   S   L N S L +              S S   P FQL  + L S
Sbjct:   294 LEYLSLFDNDFEGSFSFGSLANLSNLMVLKLCSKSSSLQVL-SESSWKPKFQLSVIALRS 352

Query:   473 GYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLP 532
                + +  P FL +Q DL +V LS   ++ + P+WLL NNTKL+ L L N+ L   F++P
Sbjct:   353 CNMEKV--PHFLLHQKDLRHVDLSDNNISGKLPSWLLANNTKLKVLLLQNN-LFTSFQIP 409

Query:   533 IHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLD 592
               +H  L  LDVS N+F    P  IG I   L   N S N    ++PSS GNMN +Q++D
Sbjct:   410 KSAHNLL-FLDVSANDFNHLFPENIGWIFPHLRYLNTSKNNFQENLPSSLGNMNGIQYMD 468

Query:   593 LSNNQLTGEIPEHLAMGCVXXXXXXXXXXXXEGHMFSRNFNLTNLIWLQLEGNHFVGEIP 652
             LS N   G +P     GC              G +F  + N TN++ L ++ N F G+I 
Sbjct:   469 LSRNSFHGNLPRSFVNGCYSMAILKLSHNKLSGEIFPESTNFTNILGLFMDNNLFTGKIG 528

Query:   653 QSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQIL 712
             Q L    +L+ L +SNN+L+G IP W+G L  L  +++  N ++G IP+       LQ+L
Sbjct:   529 QGLRSLINLELLDMSNNNLTGVIPSWIGELPSLTALLISDNFLKGDIPMSLFNKSSLQLL 588

Query:   713 DISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIP 772
             D+S N++SG +P  +D      + L  N L G + +    N   + ILDL  N  +G IP
Sbjct:   589 DLSANSLSGVIPPQHDSRNGVVLLLQDNKLSGTIPDTLLAN---VEILDLRNNRFSGKIP 645

Query:   773 DRVDGLSQLSYLILAHNNLEGEVPIXXXXXXXXXXXXXXXXXXHGHIPSCFDNTTLHERY 832
             + ++ +  +S L+L  NN  G++P                   +G IPSC  NT+    +
Sbjct:   646 EFIN-IQNISILLLRGNNFTGQIPHQLCGLSNIQLLDLSNNRLNGTIPSCLSNTS----F 700

Query:   833 NNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITY-----TYQGRVPSLLSGLDL 887
               G     ++  F I    DV     + + F        Y     T         +    
Sbjct:   701 GFGKECTSYDYDFGISFPSDVFNGFSLHQDFSSNKNGGIYFKSLLTLDPLSMDYKAATQT 760

Query:   888 SCNRLIGHIPPQI--GNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIP 945
                    H       GNL  +  ++LS N L+G IP  F  L  + +L+LS+N LS  IP
Sbjct:   761 KIEFATKHRYDAYMGGNLKLLFGMDLSENELSGEIPVEFGGLLELRALNLSHNNLSGVIP 820

Query:   946 YQLVELNTLAVFSVAYNNLSGKIPERAAQFATFN 979
               +  +  +  F +++N L G+IP +  +  + +
Sbjct:   821 KSISSMEKMESFDLSFNRLQGRIPSQLTELTSLS 854

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2170483 FLS2 "FLAGELLIN-SENSITIVE 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 608 (219.1 bits), Expect = 3.7e-58, Sum P(2) = 3.7e-58
 Identities = 188/647 (29%), Positives = 283/647 (43%)

Query:   372 NDLRGSLPWCLANMTSLRILDVXXXXXXXXXXXXPLIHLTSIEDLILSDNHF--QIPISL 429
             N+L G +P CL ++  L++  V             +  L ++ DL LS N    +IP   
Sbjct:   178 NNLTGKIPECLGDLVHLQMF-VAAGNHLTGSIPVSIGTLANLTDLDLSGNQLTGKIPRDF 236

Query:   430 EPLFNHSRLKIFDXXXXXXXXXXXXSHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHD 489
               L N   L + +            + S       L  L L      G   P  L N   
Sbjct:   237 GNLLNLQSLVLTENLLEGDIPAEIGNCS------SLVQLELYDNQLTG-KIPAELGNLVQ 289

Query:   490 LEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNF 549
             L+ +R+   K+    P+ L    T+L  L L  + LVGP    I   + L +L +  NNF
Sbjct:   290 LQALRIYKNKLTSSIPSSLFRL-TQLTHLGLSENHLVGPISEEIGFLESLEVLTLHSNNF 348

Query:   550 QGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMG 609
              G  P  I + L  LTV  +  N + G +P+  G +  L+ L   +N LTG IP  ++  
Sbjct:   349 TGEFPQSITN-LRNLTVLTVGFNNISGELPADLGLLTNLRNLSAHDNLLTGPIPSSIS-N 406

Query:   610 CVXXXXXXXXXXXXEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNN 669
             C              G +  R F   NL ++ +  NHF GEIP  +  CS+L+ L +++N
Sbjct:   407 CTGLKLLDLSHNQMTGEI-PRGFGRMNLTFISIGRNHFTGEIPDDIFNCSNLETLSVADN 465

Query:   670 SLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLP-SCYD 728
             +L+G +   +G L  LR + +  N + GPIP E   L+ L IL +  N  +G +P    +
Sbjct:   466 NLTGTLKPLIGKLQKLRILQVSYNSLTGPIPREIGNLKDLNILYLHSNGFTGRIPREMSN 525

Query:   729 FVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAH 788
                ++ + +  N L G + E   F+   L +LDLS N  +G IP     L  L+YL L  
Sbjct:   526 LTLLQGLRMYSNDLEGPIPE-EMFDMKLLSVLDLSNNKFSGQIPALFSKLESLTYLSLQG 584

Query:   789 NNLEGEVPIXXXXXXXXXXXXXXXXXXHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIM 848
             N   G +P                    G IP       L     N      F  + ++ 
Sbjct:   585 NKFNGSIPASLKSLSLLNTFDISDNLLTGTIPG-----ELLASLKNMQLYLNFSNN-LLT 638

Query:   849 GGMDVD-PKKQILESFDFTTKSITYTYQGRVPSLLSG------LDLSCNRLIGHIPPQI- 900
             G +  +  K ++++  D +       + G +P  L        LD S N L GHIP ++ 
Sbjct:   639 GTIPKELGKLEMVQEIDLSNN----LFSGSIPRSLQACKNVFTLDFSQNNLSGHIPDEVF 694

Query:   901 GNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVA 960
               +  I +LNLS N+ +G IP +F N+ ++ SLDLS N L+ +IP  L  L+TL    +A
Sbjct:   695 QGMDMIISLNLSRNSFSGEIPQSFGNMTHLVSLDLSSNNLTGEIPESLANLSTLKHLKLA 754

Query:   961 YNNLSGKIPERAAQFATFNESSYEGNPFLCGPPLPICISPTTMPEAS 1007
              NNL G +PE    F   N S   GN  LCG   P+   P T+ + S
Sbjct:   755 SNNLKGHVPESGV-FKNINASDLMGNTDLCGSKKPL--KPCTIKQKS 798

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0004675 "transmembrane receptor protein serine/threonine kinase activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS;IDA

GO:0016045 "detection of bacterium" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0042742 "defense response to bacterium" evidence=RCA;IMP

GO:0052544 "defense response by callose deposition in cell wall" evidence=IMP

GO:0010359 "regulation of anion channel activity" evidence=IMP

GO:0016310 "phosphorylation" evidence=RCA

GO:0005768 "endosome" evidence=IDA

GO:0006898 "receptor-mediated endocytosis" evidence=IDA

TAIR|locus:2120362 GSO1 "GASSHO1" [Arabidopsis thaliana (taxid:3702)]

 Score = 519 (187.8 bits), Expect = 3.2e-46, P = 3.2e-46
 Identities = 182/643 (28%), Positives = 279/643 (43%)

Query:   361 LVHLQELHMADNDLRGSLPWCLANMTSLRILDVXXXXXXXXXXXXPLIHLTSIEDLILSD 420
             LV+++ L + DN+L G +P  L N+ +L++L +             L  L  ++ LIL D
Sbjct:   142 LVNIRSLRIGDNELVGDIPETLGNLVNLQMLALASCRLTGPIPSQ-LGRLVRVQSLILQD 200

Query:   421 NHFQIPISLEPLFNHSRLKIFDXXXXXXXXXXXXSHSLTTPNFQLQSLLLSSGYRDGITF 480
             N+ + PI  E L N S L +F                       L+ L L++    G   
Sbjct:   201 NYLEGPIPAE-LGNCSDLTVFTAAENMLNGTIPAELGRLE---NLEILNLANNSLTG-EI 255

Query:   481 PKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLR 540
             P  L     L+Y+ L   ++    P  L +    L+ L L  ++L G       +  QL 
Sbjct:   256 PSQLGEMSQLQYLSLMANQLQGLIPKSLADLGN-LQTLDLSANNLTGEIPEEFWNMSQLL 314

Query:   541 LLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTG 600
              L ++ N+  G +P  I    + L    +S   L G IP        L+ LDLSNN L G
Sbjct:   315 DLVLANNHLSGSLPKSICSNNTNLEQLVLSGTQLSGEIPVELSKCQSLKQLDLSNNSLAG 374

Query:   601 EIPEHLAMGCVXXXXXXXXXXXXEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSS 660
              IPE L    V            EG +     NLTNL WL L  N+  G++P+ +S    
Sbjct:   375 SIPEAL-FELVELTDLYLHNNTLEGTLSPSISNLTNLQWLVLYHNNLEGKLPKEISALRK 433

Query:   661 LQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNIS 720
             L+ LFL  N  SG+IP+ +GN T L+ I M  NH EG IP    +L+ L +L +  N + 
Sbjct:   434 LEVLFLYENRFSGEIPQEIGNCTSLKMIDMFGNHFEGEIPPSIGRLKELNLLHLRQNELV 493

Query:   721 GSLPS----CYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVD 776
             G LP+    C+    ++   L+ N L G +     F    L  L L  N L GN+PD + 
Sbjct:   494 GGLPASLGNCHQLNILD---LADNQLSGSIPSSFGF-LKGLEQLMLYNNSLQGNLPDSLI 549

Query:   777 GLSQLSYLILAHNNLEGEV-PIXXXXXXXXXXXXXXXXXXHGHIPSCFDNTTLHERYNNG 835
              L  L+ + L+HN L G + P+                     IP    N+   +R   G
Sbjct:   550 SLRNLTRINLSHNRLNGTIHPLCGSSSYLSFDVTNNGF--EDEIPLELGNSQNLDRLRLG 607

Query:   836 SSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTY--QGRVPSLLSGLDLSCNRLI 893
              +    +  + +  G     K + L   D ++ ++T T   Q  +   L+ +DL+ N L 
Sbjct:   608 KNQLTGKIPWTL--G-----KIRELSLLDMSSNALTGTIPLQLVLCKKLTHIDLNNNFLS 660

Query:   894 GHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNT 953
             G IPP +G L+++  L LS N     +P+   N   +  L L  N L+  IP ++  L  
Sbjct:   661 GPIPPWLGKLSQLGELKLSSNQFVESLPTELFNCTKLLVLSLDGNSLNGSIPQEIGNLGA 720

Query:   954 LAVFSVAYNNLSGKIPERAAQFATFNESSYEGNPFLCGPPLPI 996
             L V ++  N  SG +P+   + +   E     N  L G  +P+
Sbjct:   721 LNVLNLDKNQFSGSLPQAMGKLSKLYELRLSRNS-LTGE-IPV 761

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0008544 "epidermis development" evidence=IGI

GO:0009790 "embryo development" evidence=IGI

TAIR|locus:2156349 GSO2 "GASSHO 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 563 (203.2 bits), Expect = 4.8e-51, P = 4.8e-51
 Identities = 215/806 (26%), Positives = 344/806 (42%)

Query:   217 LEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRK-LSYLHLLRVGIRDGSKLLQ 275
             L GSI        +NL  +D+S N +    +P   S L   L  LHL    +  G  +  
Sbjct:    83 LTGSIS-PSIGRFNNLIHIDLSSNRLVG-PIPTTLSNLSSSLESLHLFS-NLLSGD-IPS 138

Query:   276 SMGSFPSLNTLDLSYNNFXXXXXXXXQGFPHFKSLKELYMDDARIA------------LN 323
              +GS  +L +L L  N          + F +  +L+ L +   R+             L 
Sbjct:   139 QLGSLVNLKSLKLGDNELNGTIP---ETFGNLVNLQMLALASCRLTGLIPSRFGRLVQLQ 195

Query:   324 TSFLQ---IIGESMPSIQYXXXXXXXXXXXXR---TLDQGLCPLVHLQELHMADNDLRGS 377
             T  LQ   + G     I              R   +L   L  L +LQ L++ DN   G 
Sbjct:   196 TLILQDNELEGPIPAEIGNCTSLALFAAAFNRLNGSLPAELNRLKNLQTLNLGDNSFSGE 255

Query:   378 LPWCLANMTSLRILDVXXXXXXXXXXXXPLIHLTSIEDLILSDNHFQIPISLEPLFNHSR 437
             +P  L ++ S++ L++             L  L +++ L LS N+    I  E  +  ++
Sbjct:   256 IPSQLGDLVSIQYLNLIGNQLQGLIPKR-LTELANLQTLDLSSNNLTGVIH-EEFWRMNQ 313

Query:   438 LKIFDXXXXXXXXXXXXSHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSH 497
             L+                 ++ + N  L+ L LS     G   P  + N   L+ + LS+
Sbjct:   314 LEFL--VLAKNRLSGSLPKTICSNNTSLKQLFLSETQLSG-EIPAEISNCQSLKLLDLSN 370

Query:   498 IKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEI 557
               +  + P+ L +   +L  L L N+SL G     I +   L+   +  NN +G +P EI
Sbjct:   371 NTLTGQIPDSLFQL-VELTNLYLNNNSLEGTLSSSISNLTNLQEFTLYHNNLEGKVPKEI 429

Query:   558 GDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVXXXXXX 617
             G  L +L +  +  N   G +P   GN   LQ +D   N+L+GEIP  +           
Sbjct:   430 G-FLGKLEIMYLYENRFSGEMPVEIGNCTRLQEIDWYGNRLSGEIPSSIGR-LKDLTRLH 487

Query:   618 XXXXXXEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPR 677
                    G++ +   N   +  + L  N   G IP S    ++L+   + NNSL G +P 
Sbjct:   488 LRENELVGNIPASLGNCHQMTVIDLADNQLSGSIPSSFGFLTALELFMIYNNSLQGNLPD 547

Query:   678 WLGNLTVLRHIIMPKNHIEGPI-PLEFCQLRILQILDISDNNISGSLP-SCYDFVCIEQV 735
              L NL  L  I    N   G I PL  C        D+++N   G +P        ++++
Sbjct:   548 SLINLKNLTRINFSSNKFNGSISPL--CGSSSYLSFDVTENGFEGDIPLELGKSTNLDRL 605

Query:   736 HLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEV 795
              L KN   G++   TF     L +LD+S N L+G IP  +    +L+++ L +N L G +
Sbjct:   606 RLGKNQFTGRIPR-TFGKISELSLLDISRNSLSGIIPVELGLCKKLTHIDLNNNYLSGVI 664

Query:   796 PIXXXXXXXXXXXXXXXXXXHGHIPS-CFDNTTLHERYNNGSSLQPFETSFVIMGGMDVD 854
             P                    G +P+  F  T +   + +G+SL       +  G +   
Sbjct:   665 PTWLGKLPLLGELKLSSNKFVGSLPTEIFSLTNILTLFLDGNSLNGSIPQEI--GNL--- 719

Query:   855 PKKQILESFDFTTKSITYTYQGRVPSL--LSGLDLSCNRLIGHIPPQIGNLTKIQT-LNL 911
                Q L + +     ++      +  L  L  L LS N L G IP +IG L  +Q+ L+L
Sbjct:   720 ---QALNALNLEENQLSGPLPSTIGKLSKLFELRLSRNALTGEIPVEIGQLQDLQSALDL 776

Query:   912 SHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPER 971
             S+NN  G IPST S L  +ESLDLS+N+L  ++P Q+ ++ +L   +++YNNL GK+ + 
Sbjct:   777 SYNNFTGRIPSTISTLPKLESLDLSHNQLVGEVPGQIGDMKSLGYLNLSYNNLEGKLKK- 835

Query:   972 AAQFATFNESSYEGNPFLCGPPLPIC 997
               QF+ +   ++ GN  LCG PL  C
Sbjct:   836 --QFSRWQADAFVGNAGLCGSPLSHC 859

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009553 "embryo sac development" evidence=IMP

GO:0008544 "epidermis development" evidence=IGI

GO:0009790 "embryo development" evidence=IGI

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pg.C_scaffold_1573000001 hypothetical protein (1097 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	1077
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-60
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	7e-50
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	7e-49
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-47
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-34
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	8e-30
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-16
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-10
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	7e-10
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	8e-10
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	6e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-08
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-08
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	7e-08
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-07
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	2e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	5e-07
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-06
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-06
pfam08263	42	pfam08263, LRRNT_2, Leucine rich repeat N-terminal	2e-06
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	5e-06
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	5e-06
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	6e-06
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	3e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	4e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	1e-04
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	1e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	4e-04
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	5e-04
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	6e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	7e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	7e-04
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	8e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.001
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	0.001
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	0.002
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.003
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.004

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  223 bits (569), Expect = 4e-60
 Identities = 188/609 (30%), Positives = 275/609 (45%), Gaps = 99/609 (16%)

Query: 388 LRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAENNE 447
           ++ +++S+NQL G I        +S+  L LS+N+F   I    + N   L+  D  NN 
Sbjct: 95  IQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPN---LETLDLSNNM 151

Query: 448 INAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNW 507
           ++ EI                       D  +F         L+ + L    +  + PN 
Sbjct: 152 LSGEI---------------------PNDIGSF-------SSLKVLDLGGNVLVGKIPNS 183

Query: 508 LLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVF 567
           L  N T L  L+L ++ LVG     +   K L+ + +  NN  G IP EIG  L+ L   
Sbjct: 184 L-TNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGG-LTSLNHL 241

Query: 568 NISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHM 627
           ++  N L G IPSS GN+  LQ+L L  N+L+G IP  +      L SL LS+N+L G +
Sbjct: 242 DLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSI-FSLQKLISLDLSDNSLSGEI 300

Query: 628 FSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLG---NLTV 684
                 L NL  L L  N+F G+IP +L+    LQ L L +N  SG+IP+ LG   NLTV
Sbjct: 301 PELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTV 360

Query: 685 LRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLP-SCYDFVCIEQVHLSKNMLH 743
           L    +  N++ G IP   C    L  L +  N++ G +P S      + +V L  N   
Sbjct: 361 LD---LSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFS 417

Query: 744 GQLKEGTFFNCLTLM-ILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRL 802
           G+L     F  L L+  LD+S N+L G I  R   +  L  L LA N   G +P      
Sbjct: 418 GELPSE--FTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLP-DSFGS 474

Query: 803 NQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILES 862
            +L+ LDLS N   G +P                                          
Sbjct: 475 KRLENLDLSRNQFSGAVPRKL--------------------------------------- 495

Query: 863 FDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPS 922
                        G +  L+  L LS N+L G IP ++ +  K+ +L+LSHN L+G IP+
Sbjct: 496 -------------GSLSELMQ-LKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPA 541

Query: 923 TFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQFATFNESS 982
           +FS +  +  LDLS N+LS +IP  L  + +L   ++++N+L G +P   A F   N S+
Sbjct: 542 SFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGA-FLAINASA 600

Query: 983 YEGNPFLCG 991
             GN  LCG
Sbjct: 601 VAGNIDLCG 609

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  191 bits (487), Expect = 7e-50
 Identities = 144/437 (32%), Positives = 216/437 (49%), Gaps = 48/437 (10%)

Query: 542 LDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSS-FGNMNFLQFLDLSNNQLTG 600
           +D+S  N  G I   I   L  +   N+S N L G IP   F   + L++L+LSNN  TG
Sbjct: 74  IDLSGKNISGKISSAIFR-LPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTG 132

Query: 601 EIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSS 660
            IP         L +L LSNN L G + +   + ++L  L L GN  VG+IP SL+  +S
Sbjct: 133 SIPRGSIPN---LETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTS 189

Query: 661 LQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNIS 720
           L+ L L++N L G+IPR LG +  L+ I +  N++ G IP E   L  L  LD+  NN++
Sbjct: 190 LEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLT 249

Query: 721 GSLPSCY-DFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLS 779
           G +PS   +   ++ + L +N L G +   + F+   L+ LDLS N L+G IP+ V  L 
Sbjct: 250 GPIPSSLGNLKNLQYLFLYQNKLSGPIPP-SIFSLQKLISLDLSDNSLSGEIPELVIQLQ 308

Query: 780 QLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQ 839
            L  L L  NN  G++P+ L  L +LQ+L L +N   G IP          ++NN     
Sbjct: 309 NLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLG------KHNN----- 357

Query: 840 PFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLL--SG----LDLSCNRLI 893
                               L   D +T ++T    G +P  L  SG    L L  N L 
Sbjct: 358 --------------------LTVLDLSTNNLT----GEIPEGLCSSGNLFKLILFSNSLE 393

Query: 894 GHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNT 953
           G IP  +G    ++ + L  N+ +G +PS F+ L  +  LD+S N L  +I  +  ++ +
Sbjct: 394 GEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPS 453

Query: 954 LAVFSVAYNNLSGKIPE 970
           L + S+A N   G +P+
Sbjct: 454 LQMLSLARNKFFGGLPD 470

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  188 bits (479), Expect = 7e-49
 Identities = 203/701 (28%), Positives = 310/701 (44%), Gaps = 132/701 (18%)

Query: 8   MVVMFVLLLIIFEGGWSEGCLNHERFALL-QLKLFFIDPYNYLLDWVDDEGATDCCQWER 66
           ++ M   L + F        L+ E   LL   K    DP  YL +W     + D C W+ 
Sbjct: 12  LIFMLFFLFLNF------SMLHAEELELLLSFKSSINDPLKYLSNW---NSSADVCLWQG 62

Query: 67  VSCNNTMGRVVVLDLS-QTHRGEYWYLNASLFT-PFQQLESLDLRDNDIAGCVENEGLER 124
           ++CNN+  RVV +DLS +   G+   +++++F  P+  +++++L +N ++G + ++ +  
Sbjct: 63  ITCNNS-SRVVSIDLSGKNISGK---ISSAIFRLPY--IQTINLSNNQLSGPIPDD-IFT 115

Query: 125 LSRLSNLKMLNLVGNLFNNSILSSLARLSSLTSLDLSANRLKGSIDIKGPKRLSRLNNLK 184
            S  S+L+ LNL  N F  SI      + +L +LDLS N L G I    P  +   ++LK
Sbjct: 116 TS--SSLRYLNLSNNNFTGSI--PRGSIPNLETLDLSNNMLSGEI----PNDIGSFSSLK 167

Query: 185 VFDLSGNLFNNSILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDN 244
           V DL GN+    I +SL  L+SL  L L  N+L G I   E   + +L+ + + YN +  
Sbjct: 168 VLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPR-ELGQMKSLKWIYLGYNNLSG 226

Query: 245 FEVPQACSGLRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTETVTTTTQGF 304
            E+P                            +G   SLN LDL YNN T  +       
Sbjct: 227 -EIP--------------------------YEIGGLTSLNHLDLVYNNLTGPIP------ 253

Query: 305 PHFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHL 364
               +LK L                        QYL L  + +S     +   +  L  L
Sbjct: 254 SSLGNLKNL------------------------QYLFLYQNKLSG---PIPPSIFSLQKL 286

Query: 365 QELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHF- 423
             L ++DN L G +P  +  + +L IL + SN   G I  + L  L  ++ L L  N F 
Sbjct: 287 ISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVA-LTSLPRLQVLQLWSNKFS 345

Query: 424 -QIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPK 482
            +IP +L     H+ L + D   N +  EI E    +   F+L  +L S+     I  PK
Sbjct: 346 GEIPKNLG---KHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKL--ILFSNSLEGEI--PK 398

Query: 483 FLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQ---LSLVNDSLVGPFRLPIHSHKQL 539
            L     L  VRL     + E P+      TKL     L + N++L G           L
Sbjct: 399 SLGACRSLRRVRLQDNSFSGELPSEF----TKLPLVYFLDISNNNLQGRINSRKWDMPSL 454

Query: 540 RLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLT 599
           ++L +++N F G +P   G    RL   ++S N   G++P   G+++ L  L LS N+L+
Sbjct: 455 QMLSLARNKFFGGLPDSFGS--KRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLS 512

Query: 600 GEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCS 659
           GEIP+ L+  C  L SL LS+N L G                         IP S S+  
Sbjct: 513 GEIPDELS-SCKKLVSLDLSHNQLSGQ------------------------IPASFSEMP 547

Query: 660 SLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIP 700
            L  L LS N LSG+IP+ LGN+  L  + +  NH+ G +P
Sbjct: 548 VLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLP 588

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  183 bits (466), Expect = 3e-47
 Identities = 145/443 (32%), Positives = 209/443 (47%), Gaps = 53/443 (11%)

Query: 562 SRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNN 621
           SR+   ++S   + G I S+   + ++Q ++LSNNQL+G IP+ +     SLR L LSNN
Sbjct: 69  SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNN 128

Query: 622 NLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGN 681
           N  G +  R   + NL  L L  N   GEIP  +   SSL+ L L  N L GKIP  L N
Sbjct: 129 NFTGSI-PRGS-IPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTN 186

Query: 682 LTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNM 741
           LT L  + +  N + G IP E  Q++ L+ + +  NN+SG +P         ++      
Sbjct: 187 LTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPY--------EI------ 232

Query: 742 LHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCR 801
             G L         +L  LDL YN+L G IP  +  L  L YL L  N L G +P  +  
Sbjct: 233 --GGLT--------SLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFS 282

Query: 802 LNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFV--IMGGMDVDPKKQI 859
           L +L  LDLS+N+L G IP       L  +  N   L  F  +F   I   +   P+ Q+
Sbjct: 283 LQKLISLDLSDNSLSGEIPE------LVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQV 336

Query: 860 LESFDFTTKSITYTYQGRVP------SLLSGLDLSCNRLIGHIPPQI---GNLTKIQTLN 910
           L+ +       +  + G +P      + L+ LDLS N L G IP  +   GNL K   L 
Sbjct: 337 LQLW-------SNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFK---LI 386

Query: 911 LSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPE 970
           L  N+L G IP +    R++  + L  N  S ++P +  +L  +    ++ NNL G+I  
Sbjct: 387 LFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINS 446

Query: 971 RAAQFATFNESSYEGNPFLCGPP 993
           R     +    S   N F  G P
Sbjct: 447 RKWDMPSLQMLSLARNKFFGGLP 469

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  143 bits (361), Expect = 1e-34
 Identities = 109/361 (30%), Positives = 170/361 (47%), Gaps = 71/361 (19%)

Query: 613 LRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLS 672
           L S   S N+   ++ + N +    +W  +  N+            S +  + LS  ++S
Sbjct: 34  LLSFKSSINDPLKYLSNWNSSADVCLWQGITCNNS-----------SRVVSIDLSGKNIS 82

Query: 673 GKIPRWLGNLTVLRHIIMPKNHIEGPIPLE-FCQLRILQILDISDNNISGSLPSCYDFVC 731
           GKI   +  L  ++ I +  N + GPIP + F     L+ L++S+NN +GS+P       
Sbjct: 83  GKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIP-N 141

Query: 732 IEQVHLSKNMLHGQLKE--GTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHN 789
           +E + LS NML G++    G+F +   L +LDL  N L G IP+ +  L+ L +L LA N
Sbjct: 142 LETLDLSNNMLSGEIPNDIGSFSS---LKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASN 198

Query: 790 NLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMG 849
            L G++P +L ++  L+ + L  NNL G I                    P+E     +G
Sbjct: 199 QLVGQIPRELGQMKSLKWIYLGYNNLSGEI--------------------PYE-----IG 233

Query: 850 GMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTL 909
           G+                            + L+ LDL  N L G IP  +GNL  +Q L
Sbjct: 234 GL----------------------------TSLNHLDLVYNNLTGPIPSSLGNLKNLQYL 265

Query: 910 NLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIP 969
            L  N L+GPIP +  +L+ + SLDLS N LS +IP  +++L  L +  +  NN +GKIP
Sbjct: 266 FLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIP 325

Query: 970 E 970
            
Sbjct: 326 V 326

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  127 bits (321), Expect = 8e-30
 Identities = 104/336 (30%), Positives = 150/336 (44%), Gaps = 64/336 (19%)

Query: 650 EIPQSLSKCSSLQG--LFLSNNSLSGKIPRWLG----NLTVLRHIIMPKNHIEGPIPLEF 703
           E+   LS  SS+     +LSN + S  +  W G    N + +  I +   +I G I    
Sbjct: 30  ELELLLSFKSSINDPLKYLSNWNSSADVCLWQGITCNNSSRVVSIDLSGKNISGKISSAI 89

Query: 704 CQLRILQILDISDNNISGSLPSCYDFVC--IEQVHLSKNMLHGQLKEGTFFNCLTLMILD 761
            +L  +Q +++S+N +SG +P         +  ++LS N   G +  G+  N   L  LD
Sbjct: 90  FRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPN---LETLD 146

Query: 762 LSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPS 821
           LS N L+G IP+ +   S L  L L  N L G++P  L  L  L+ L L++N L G IP 
Sbjct: 147 LSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIP- 205

Query: 822 CFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSL 881
                   E                 +G M                KS+ + Y G     
Sbjct: 206 -------RE-----------------LGQM----------------KSLKWIYLGY---- 221

Query: 882 LSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLS 941
                   N L G IP +IG LT +  L+L +NNL GPIPS+  NL+N++ L L  NKLS
Sbjct: 222 --------NNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLS 273

Query: 942 WKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQFAT 977
             IP  +  L  L    ++ N+LSG+IPE   Q   
Sbjct: 274 GPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQN 309

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 84.1 bits (208), Expect = 2e-16
 Identities = 45/122 (36%), Positives = 67/122 (54%), Gaps = 8/122 (6%)

Query: 881 LLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKL 940
            + GL L    L G IP  I  L  +Q++NLS N++ G IP +  ++ ++E LDLSYN  
Sbjct: 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSF 478

Query: 941 SWKIPYQLVELNTLAVFSVAYNNLSGKIPE----RAAQFATFNESSYEGNPFLCG-PPLP 995
           +  IP  L +L +L + ++  N+LSG++P     R    A+FN   +  N  LCG P L 
Sbjct: 479 NGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFN---FTDNAGLCGIPGLR 535

Query: 996 IC 997
            C
Sbjct: 536 AC 537

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 64.5 bits (157), Expect = 2e-10
 Identities = 33/89 (37%), Positives = 52/89 (58%), Gaps = 1/89 (1%)

Query: 518 LSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGS 577
           L L N  L G     I   + L+ +++S N+ +G+IP  +G I S L V ++S N+ +GS
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITS-LEVLDLSYNSFNGS 481

Query: 578 IPSSFGNMNFLQFLDLSNNQLTGEIPEHL 606
           IP S G +  L+ L+L+ N L+G +P  L
Sbjct: 482 IPESLGQLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 62.5 bits (152), Expect = 7e-10
 Identities = 33/86 (38%), Positives = 49/86 (56%)

Query: 640 LQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPI 699
           L L+     G IP  +SK   LQ + LS NS+ G IP  LG++T L  + +  N   G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 700 PLEFCQLRILQILDISDNNISGSLPS 725
           P    QL  L+IL+++ N++SG +P+
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPA 508

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 62.5 bits (152), Expect = 8e-10
 Identities = 38/100 (38%), Positives = 58/100 (58%), Gaps = 1/100 (1%)

Query: 587 FLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNH 646
           F+  L L N  L G IP  ++     L+S+ LS N++ G++     ++T+L  L L  N 
Sbjct: 419 FIDGLGLDNQGLRGFIPNDISK-LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNS 477

Query: 647 FVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLR 686
           F G IP+SL + +SL+ L L+ NSLSG++P  LG   + R
Sbjct: 478 FNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHR 517

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 61.4 bits (149), Expect = 2e-09
 Identities = 34/84 (40%), Positives = 46/84 (54%), Gaps = 2/84 (2%)

Query: 542 LDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGE 601
           L +     +G IP +I   L  L   N+S N++ G+IP S G++  L+ LDLS N   G 
Sbjct: 423 LGLDNQGLRGFIPNDISK-LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481

Query: 602 IPEHLAMGCVSLRSLALSNNNLEG 625
           IPE L     SLR L L+ N+L G
Sbjct: 482 IPESLGQ-LTSLRILNLNGNSLSG 504

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 59.4 bits (144), Expect = 6e-09
 Identities = 32/77 (41%), Positives = 47/77 (61%), Gaps = 4/77 (5%)

Query: 145 ILSSLARLSSLTSLDLSANRLKGSIDIKGPKRLSRLNNLKVFDLSGNLFNNSILSSLARL 204
           I + +++L  L S++LS N ++G+I    P  L  + +L+V DLS N FN SI  SL +L
Sbjct: 434 IPNDISKLRHLQSINLSGNSIRGNI----PPSLGSITSLEVLDLSYNSFNGSIPESLGQL 489

Query: 205 SSLRSLLLYDNRLEGSI 221
           +SLR L L  N L G +
Sbjct: 490 TSLRILNLNGNSLSGRV 506

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 57.9 bits (140), Expect = 2e-08
 Identities = 34/85 (40%), Positives = 45/85 (52%)

Query: 616 LALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKI 675
           L L N  L G + +    L +L  + L GN   G IP SL   +SL+ L LS NS +G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 676 PRWLGNLTVLRHIIMPKNHIEGPIP 700
           P  LG LT LR + +  N + G +P
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 56.7 bits (137), Expect = 4e-08
 Identities = 33/105 (31%), Positives = 51/105 (48%), Gaps = 24/105 (22%)

Query: 695 IEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNC 754
           + G IP +  +LR LQ +++S N+I G++P                         +  + 
Sbjct: 430 LRGFIPNDISKLRHLQSINLSGNSIRGNIPP------------------------SLGSI 465

Query: 755 LTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQL 799
            +L +LDLSYN  NG+IP+ +  L+ L  L L  N+L G VP  L
Sbjct: 466 TSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 56.4 bits (136), Expect = 7e-08
 Identities = 31/90 (34%), Positives = 53/90 (58%), Gaps = 9/90 (10%)

Query: 117 VENEGL-----ERLSRLSNLKMLNLVGNLFNNSILSSLARLSSLTSLDLSANRLKGSIDI 171
           ++N+GL       +S+L +L+ +NL GN    +I  SL  ++SL  LDLS N   GSI  
Sbjct: 425 LDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI-- 482

Query: 172 KGPKRLSRLNNLKVFDLSGNLFNNSILSSL 201
             P+ L +L +L++ +L+GN  +  + ++L
Sbjct: 483 --PESLGQLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 55.2 bits (133), Expect = 1e-07
 Identities = 29/71 (40%), Positives = 45/71 (63%), Gaps = 3/71 (4%)

Query: 361 LVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSD 420
           L HLQ ++++ N +RG++P  L ++TSL +LD+S N   GSI  S L  LTS+  L L+ 
Sbjct: 441 LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPES-LGQLTSLRILNLNG 499

Query: 421 NHF--QIPISL 429
           N    ++P +L
Sbjct: 500 NSLSGRVPAAL 510

Length = 623

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 53.9 bits (130), Expect = 2e-07
 Identities = 65/292 (22%), Positives = 111/292 (38%), Gaps = 44/292 (15%)

Query: 128 LSNLKMLNLVGNLFNNS----ILSSLARLSSLTSLDLSANRLKGSIDIKG--PKRLSRLN 181
           L  L++L L GN         + S+L    SL  L LS N             + L++  
Sbjct: 22  LLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC 81

Query: 182 NLKVFDLSGNLF---NNSILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSL----SNLEE 234
            L+  DLS N        +L SL R SSL+ L L +N L           L      LE+
Sbjct: 82  GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEK 141

Query: 235 LDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFT 294
           L +  N ++                           +K L++      L  L+L+ N   
Sbjct: 142 LVLGRNRLEG--------------------ASCEALAKALRANR---DLKELNLANNGIG 178

Query: 295 ET-VTTTTQGFPHFKSLKELYMDDARIA-LNTSFLQIIGESMPSIQYLSLSNSSVSNN-- 350
           +  +    +G     +L+ L +++  +     S L     S+ S++ L+L ++++++   
Sbjct: 179 DAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGA 238

Query: 351 SRTLDQGLCPLVHLQELHMADNDLR----GSLPWCLANMTSLRILDVSSNQL 398
           +      L P + L  L ++ ND+       L   LA   SL  LD+  N+ 
Sbjct: 239 AALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKF 290

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 53.3 bits (128), Expect = 5e-07
 Identities = 28/80 (35%), Positives = 41/80 (51%), Gaps = 1/80 (1%)

Query: 760 LDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHI 819
           L L    L G IP+ +  L  L  + L+ N++ G +P  L  +  L++LDLS N+ +G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 820 PSCFDNTTLHERYN-NGSSL 838
           P      T     N NG+SL
Sbjct: 483 PESLGQLTSLRILNLNGNSL 502

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 52.9 bits (127), Expect = 1e-06
 Identities = 33/109 (30%), Positives = 54/109 (49%), Gaps = 8/109 (7%)

Query: 97  FTPFQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILSSLARLSSLT 156
                +L  L L +N ++G + +E    LS    L  L+L  N  +  I +S + +  L+
Sbjct: 495 LGSLSELMQLKLSENKLSGEIPDE----LSSCKKLVSLDLSHNQLSGQIPASFSEMPVLS 550

Query: 157 SLDLSANRLKGSIDIKGPKRLSRLNNLKVFDLSGNLFNNSILSSLARLS 205
            LDLS N+L G I    PK L  + +L   ++S N  + S+ S+ A L+
Sbjct: 551 QLDLSQNQLSGEI----PKNLGNVESLVQVNISHNHLHGSLPSTGAFLA 595

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 52.1 bits (125), Expect = 1e-06
 Identities = 25/73 (34%), Positives = 43/73 (58%)

Query: 757 LMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLH 816
           L  ++LS N + GNIP  +  ++ L  L L++N+  G +P  L +L  L++L+L+ N+L 
Sbjct: 444 LQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLS 503

Query: 817 GHIPSCFDNTTLH 829
           G +P+      LH
Sbjct: 504 GRVPAALGGRLLH 516

Length = 623

>gnl|CDD|219766 pfam08263, LRRNT_2, Leucine rich repeat N-terminal domain

 Score = 45.4 bits (108), Expect = 2e-06
 Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 3/44 (6%)

Query: 28 LNHERFALLQLKLFFIDPYN-YLLDWVDDEGATDCCQWERVSCN 70
          LN +R ALL  K       +  L  W     ++D C W  V+C+
Sbjct: 1  LNDDRDALLAFKSSLNGDPSGALSSWNPS--SSDPCSWTGVTCD 42

Leucine Rich Repeats pfam00560 are short sequence motifs present in a number of proteins with diverse functions and cellular locations. Leucine Rich Repeats are often flanked by cysteine rich domains. This domain is often found at the N-terminus of tandem leucine rich repeats. Length = 42

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 50.2 bits (120), Expect = 5e-06
 Identities = 36/116 (31%), Positives = 52/116 (44%), Gaps = 24/116 (20%)

Query: 663 GLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGS 722
           GL L N  L G IP  +  L  L+ I +  N I G IP     +  L++LD+S N+ +GS
Sbjct: 422 GLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481

Query: 723 LPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGL 778
           +P                   GQL         +L IL+L+ N L+G +P  + G 
Sbjct: 482 IPESL----------------GQLT--------SLRILNLNGNSLSGRVPAALGGR 513

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 44.5 bits (106), Expect = 5e-06
 Identities = 27/57 (47%), Positives = 32/57 (56%), Gaps = 2/57 (3%)

Query: 885 LDLSCNRLIGHIPPQI-GNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKL 940
           LDLS NRL   IP      L  ++ L+LS NNL    P  FS L ++ SLDLS N L
Sbjct: 5   LDLSNNRL-TVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 49.3 bits (118), Expect = 6e-06
 Identities = 57/263 (21%), Positives = 95/263 (36%), Gaps = 34/263 (12%)

Query: 217 LEGSIDVKE-FDSLSNLEELDMSYNEIDNFEVPQACSGLRK---LSYLHL----LRVGIR 268
           L  +    E    L  L+ L +  N +         S LR    L  L L         R
Sbjct: 9   LLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPR 68

Query: 269 DGSKLLQSMGSFPSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDARIALNTSFLQ 328
               LLQ +     L  LDLS N          +      SL+EL +++  +      L+
Sbjct: 69  GLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLG--DRGLR 126

Query: 329 IIGESMPSIQY----LSLSNSSVSNNS-RTLDQGLCPLVHLQELHMADNDLRG----SLP 379
           ++ + +  +      L L  + +   S   L + L     L+EL++A+N +      +L 
Sbjct: 127 LLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALA 186

Query: 380 WCLANMTSLRILDVSSNQLI---GSISSSPLIHLTSIEDLILSDNHFQIPISLEP----- 431
             L    +L +LD+++N L     S  +  L  L S+E L L DN     ++        
Sbjct: 187 EGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDN----NLTDAGAAALA 242

Query: 432 ---LFNHSRLKIFDAENNEINAE 451
              L  +  L       N+I  +
Sbjct: 243 SALLSPNISLLTLSLSCNDITDD 265

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 47.3 bits (112), Expect = 3e-05
 Identities = 82/355 (23%), Positives = 131/355 (36%), Gaps = 26/355 (7%)

Query: 175 KRLSRLNNLKVFDLSGNLFNNS--ILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNL 232
              S L+ L   DL      +S     +L  L  L SL L  NRL  +I   E   L+NL
Sbjct: 61  LLPSSLSRLLSLDLLSPSGISSLDGSENLLNLLPLPSLDLNLNRLRSNIS--ELLELTNL 118

Query: 233 EELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNN 292
             LD+  N I +   P        L  L L    I     L   + + P+L  LDLS+N+
Sbjct: 119 TSLDLDNNNITDIP-PLIGLLKSNLKELDLSDNKIES---LPSPLRNLPNLKNLDLSFND 174

Query: 293 FTETVTTTTQGFPHFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSR 352
            ++          +  +L  L +   +I+     +    E + +++ L LSN    N+  
Sbjct: 175 LSDLPK----LLSNLSNLNNLDLSGNKISDLPPEI----ELLSALEELDLSN----NSII 222

Query: 353 TLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTS 412
            L   L  L +L  L +++N L       + N+++L  LD+S+NQ+    S S L  LT+
Sbjct: 223 ELLSSLSNLKNLSGLELSNNKLEDLPES-IGNLSNLETLDLSNNQI---SSISSLGSLTN 278

Query: 413 IEDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPN-FQLQSLLLS 471
           + +L LS N     + L  L       + +        E+  +  L   N          
Sbjct: 279 LRELDLSGNSLSNALPLIALLLLLLELLLNLLLTLKALELKLNSILLNNNILSNGETSSP 338

Query: 472 SGYRDGITFPKFLYNQHDL-EYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSL 525
                  +        + L E     +I  N      LL+   K     L   + 
Sbjct: 339 EALSILESLNNLWTLDNALDESNLNRYIVKNPNAIGSLLDLVKKHVNQLLEKVNY 393

Length = 394

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 47.5 bits (113), Expect = 4e-05
 Identities = 31/108 (28%), Positives = 57/108 (52%), Gaps = 7/108 (6%)

Query: 64  WERVSC--NNTMGRVVVLDLSQTHRGEYWYLNASLFTPFQQLESLDLRDNDIAGCVENEG 121
           W    C  ++T G+  +  L   ++G   ++  +  +  + L+S++L  N I G +    
Sbjct: 404 WSGADCQFDSTKGKWFIDGLGLDNQGLRGFI-PNDISKLRHLQSINLSGNSIRGNIPPS- 461

Query: 122 LERLSRLSNLKMLNLVGNLFNNSILSSLARLSSLTSLDLSANRLKGSI 169
              L  +++L++L+L  N FN SI  SL +L+SL  L+L+ N L G +
Sbjct: 462 ---LGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRV 506

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 41.8 bits (99), Expect = 4e-05
 Identities = 28/60 (46%), Positives = 30/60 (50%), Gaps = 2/60 (3%)

Query: 757 LMILDLSYNHLNGNIPDRV-DGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNL 815
           L  LDLS N L   IPD    GL  L  L L+ NNL    P     L  L+ LDLS NNL
Sbjct: 2   LKSLDLSNNRL-TVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 40.6 bits (96), Expect = 1e-04
 Identities = 25/61 (40%), Positives = 30/61 (49%), Gaps = 1/61 (1%)

Query: 563 RLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNN 622
            L   ++S N L      +F  +  L+ LDLS N LT  I      G  SLRSL LS NN
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLT-SISPEAFSGLPSLRSLDLSGNN 59

Query: 623 L 623
           L
Sbjct: 60  L 60

Length = 60

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 45.3 bits (107), Expect = 1e-04
 Identities = 63/219 (28%), Positives = 108/219 (49%), Gaps = 10/219 (4%)

Query: 509 LENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFN 568
           L   T L  L L N+++     L       L+ LD+S N  +  +P  + + L  L   +
Sbjct: 112 LLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRN-LPNLKNLD 169

Query: 569 ISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMF 628
           +S N L   +P    N++ L  LDLS N+++ ++P  + +   +L  L LSNN++   + 
Sbjct: 170 LSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIEL-LSALEELDLSNNSIIELLS 226

Query: 629 SRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHI 688
           S + NL NL  L+L  N  + ++P+S+   S+L+ L LSNN +S      LG+LT LR +
Sbjct: 227 SLS-NLKNLSGLELSNN-KLEDLPESIGNLSNLETLDLSNNQIS--SISSLGSLTNLREL 282

Query: 689 IMPKNHIEGPIPLEF-CQLRILQILDISDNNISGSLPSC 726
            +  N +   +PL     L +  +L++     +  L   
Sbjct: 283 DLSGNSLSNALPLIALLLLLLELLLNLLLTLKALELKLN 321

Length = 394

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 39.1 bits (92), Expect = 4e-04
 Identities = 24/57 (42%), Positives = 32/57 (56%), Gaps = 2/57 (3%)

Query: 206 SLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHL 262
           +L+SL L +NRL   I    F  L NL+ LD+S N + +   P+A SGL  L  L L
Sbjct: 1   NLKSLDLSNNRLT-VIPDGAFKGLPNLKVLDLSGNNLTSIS-PEAFSGLPSLRSLDL 55

Length = 60

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 43.7 bits (103), Expect = 5e-04
 Identities = 23/70 (32%), Positives = 41/70 (58%), Gaps = 1/70 (1%)

Query: 514 KLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNA 573
            L+ ++L  +S+ G     + S   L +LD+S N+F G IP  +G  L+ L + N++ N+
Sbjct: 443 HLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQ-LTSLRILNLNGNS 501

Query: 574 LDGSIPSSFG 583
           L G +P++ G
Sbjct: 502 LSGRVPAALG 511

Length = 623

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 42.7 bits (101), Expect = 6e-04
 Identities = 37/159 (23%), Positives = 63/159 (39%), Gaps = 36/159 (22%)

Query: 94  ASLFTPFQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILSSLARLS 153
           A      + L+ L+L +N I       G+  L+                      L    
Sbjct: 158 AKALRANRDLKELNLANNGIGD----AGIRALAE--------------------GLKANC 193

Query: 154 SLTSLDLSANRL--KGSIDIKGPKRLSRLNNLKVFDLSGNLFNNSILSSLA-----RLSS 206
           +L  LDL+ N L  +G+  +     L+ L +L+V +L  N   ++  ++LA        S
Sbjct: 194 NLEVLDLNNNGLTDEGASALAET--LASLKSLEVLNLGDNNLTDAGAAALASALLSPNIS 251

Query: 207 LRSLLLYDNRLE--GSIDVKEF-DSLSNLEELDMSYNEI 242
           L +L L  N +   G+ D+ E      +L ELD+  N+ 
Sbjct: 252 LLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKF 290

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 38.7 bits (91), Expect = 7e-04
 Identities = 28/64 (43%), Positives = 32/64 (50%), Gaps = 4/64 (6%)

Query: 154 SLTSLDLSANRLKGSIDIKGPKRLSRLNNLKVFDLSGNLFNNSILSSLARLSSLRSLLLY 213
           +L SLDLS NRL              L NLKV DLSGN   +    + + L SLRSL L 
Sbjct: 1   NLKSLDLSNNRLTV----IPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLS 56

Query: 214 DNRL 217
            N L
Sbjct: 57  GNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 38.3 bits (90), Expect = 7e-04
 Identities = 16/60 (26%), Positives = 25/60 (41%)

Query: 636 NLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHI 695
           NL  L L  N        +     +L+ L LS N+L+   P     L  LR + +  N++
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 42.6 bits (100), Expect = 8e-04
 Identities = 49/144 (34%), Positives = 74/144 (51%), Gaps = 15/144 (10%)

Query: 101 QQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILSSLARLSSLTSLDL 160
             L++LDL  ND++     +  + LS LSNL  L+L GN  +  +   +  LS+L  LDL
Sbjct: 163 PNLKNLDLSFNDLS-----DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDL 216

Query: 161 SANRLKGSIDIKGPKRLSRLNNLKVFDLSGNLFNNSILSSLARLSSLRSLLLYDNRLEGS 220
           S N +   +       LS L NL   +LS N   +    S+  LS+L +L L +N++   
Sbjct: 217 SNNSIIELLSS-----LSNLKNLSGLELSNNKLEDLP-ESIGNLSNLETLDLSNNQIS-- 268

Query: 221 IDVKEFDSLSNLEELDMSYNEIDN 244
             +    SL+NL ELD+S N + N
Sbjct: 269 -SISSLGSLTNLRELDLSGNSLSN 291

Length = 394

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 37.5 bits (88), Expect = 0.001
 Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 1/61 (1%)

Query: 182 NLKVFDLSGNLFNNSILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNE 241
           NLK  DLS N        +   L +L+ L L  N L  SI  + F  L +L  LD+S N 
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLT-SISPEAFSGLPSLRSLDLSGNN 59

Query: 242 I 242
           +
Sbjct: 60  L 60

Length = 60

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 42.3 bits (99), Expect = 0.001
 Identities = 70/291 (24%), Positives = 113/291 (38%), Gaps = 19/291 (6%)

Query: 124 RLSRLSNLKMLNLVGNLFNNSILSSLARLSSLTSLDLSANRLKGSIDIKGPKRLSRLNNL 183
            L  L+NL  L+L  N   +         S+L  LDLS N+++    +  P R   L NL
Sbjct: 111 ELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIE---SLPSPLRN--LPNL 165

Query: 184 KVFDLSGNLFNNSILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEID 243
           K  DLS N   + +   L+ LS+L +L L  N++   +   E + LS LEELD+S N I 
Sbjct: 166 KNLDLSFND-LSDLPKLLSNLSNLNNLDLSGNKIS-DLP-PEIELLSALEELDLSNNSI- 221

Query: 244 NFEVPQACSGLRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYN---NFTETVTTT 300
                +  S L  L  L  L +       L +S+G+  +L TLDLS N   + +   + T
Sbjct: 222 ----IELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSISSLGSLT 277

Query: 301 TQGFPHFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCP 360
                                L      ++   +         NS + NN+   +     
Sbjct: 278 NLRELDLSGNSLSNALPLIALLLLLLELLLNLLLTLKALELKLNSILLNNNILSNGE--- 334

Query: 361 LVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLT 411
               + L + ++           + ++L    V +   IGS+      H+ 
Sbjct: 335 TSSPEALSILESLNNLWTLDNALDESNLNRYIVKNPNAIGSLLDLVKKHVN 385

Length = 394

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 41.5 bits (97), Expect = 0.002
 Identities = 66/228 (28%), Positives = 102/228 (44%), Gaps = 23/228 (10%)

Query: 753 NCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSN 812
           N L L  LDL+ N L  NI   +  L+ L+ L L +NN+    P+     + L+ LDLS+
Sbjct: 91  NLLPLPSLDLNLNRLRSNI-SELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSD 149

Query: 813 NNLHGHIPSCFDNTTLHER----YNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTK 868
           N +   +PS   N    +     +N+ S L    +                L + D +  
Sbjct: 150 NKI-ESLPSPLRNLPNLKNLDLSFNDLSDLPKLLS------------NLSNLNNLDLSGN 196

Query: 869 SIT-YTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNL 927
            I+    +  + S L  LDLS N +I  +   + NL  +  L LS+N L   +P +  NL
Sbjct: 197 KISDLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNL 254

Query: 928 RNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQF 975
            N+E+LDLS N++S      L  L  L    ++ N+LS  +P  A   
Sbjct: 255 SNLETLDLSNNQIS--SISSLGSLTNLRELDLSGNSLSNALPLIALLL 300

Length = 394

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 36.8 bits (86), Expect = 0.003
 Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 1/61 (1%)

Query: 538 QLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQ 597
            L+ LD+S N     IP      L  L V ++S N L    P +F  +  L+ LDLS N 
Sbjct: 1   NLKSLDLSNNRLT-VIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNN 59

Query: 598 L 598
           L
Sbjct: 60  L 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 36.4 bits (85), Expect = 0.004
 Identities = 27/63 (42%), Positives = 34/63 (53%), Gaps = 7/63 (11%)

Query: 588 LQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEG---HMFSRNFNLTNLIWLQLEG 644
           L+ LDLSNN+LT  IP+    G  +L+ L LS NNL       FS    L +L  L L G
Sbjct: 2   LKSLDLSNNRLT-VIPDGAFKGLPNLKVLDLSGNNLTSISPEAFS---GLPSLRSLDLSG 57

Query: 645 NHF 647
           N+ 
Sbjct: 58  NNL 60

Length = 60

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	1077
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.97
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.96
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.96
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.96
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.91
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.9
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.89
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.89
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.86
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.84
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.77
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.76
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.67
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.66
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.63
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.63
PLN03150	623	hypothetical protein; Provisional	99.58
PLN03150	623	hypothetical protein; Provisional	99.41
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.28
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.22
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.2
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.13
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.06
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.06
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.02
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.99
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.95
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.93
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.92
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.92
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.85
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.78
PF08263	43	LRRNT_2: Leucine rich repeat N-terminal domain; In	98.78
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.7
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.68
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.68
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.63
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.62
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.62
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.61
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.43
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.42
KOG4341	483	consensus F-box protein containing LRR [General fu	98.37
KOG4341	483	consensus F-box protein containing LRR [General fu	98.37
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.1
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.09
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.06
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.05
PRK15386	426	type III secretion protein GogB; Provisional	97.81
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.75
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.74
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.71
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.65
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.57
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.53
PRK15386	426	type III secretion protein GogB; Provisional	97.45
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.44
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.37
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.25
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.17
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.81
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.76
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.71
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.4
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.29
KOG4308	478	consensus LRR-containing protein [Function unknown	95.93
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.3
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.08
KOG4308	478	consensus LRR-containing protein [Function unknown	94.33
KOG3864	221	consensus Uncharacterized conserved protein [Funct	92.73
KOG0473	326	consensus Leucine-rich repeat protein [Function un	91.23
KOG3864	221	consensus Uncharacterized conserved protein [Funct	90.34
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	90.16
KOG4242	553	consensus Predicted myosin-I-binding protein [Cell	88.76
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	88.57
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	86.95
smart00370	26	LRR Leucine-rich repeats, outliers.	86.95
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	86.66
KOG0473	326	consensus Leucine-rich repeat protein [Function un	86.18
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	85.69
smart00370	26	LRR Leucine-rich repeats, outliers.	85.69
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	85.33

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=1.5e-68  Score=683.89  Aligned_cols=584  Identities=36%  Similarity=0.526  Sum_probs=417.2

Q ss_pred             cHHHHHHHHhchhhccCCCCcccCCCCCCCCCCCccccceEecCCCCceEEEEcCCcccCccccccccccccCcCCcEee
Q 001439           28 LNHERFALLQLKLFFIDPYNYLLDWVDDEGATDCCQWERVSCNNTMGRVVVLDLSQTHRGEYWYLNASLFTPFQQLESLD  107 (1077)
Q Consensus        28 ~~~~~~all~~k~~~~~~~~~l~~w~~~~~~~~~c~w~gv~c~~~~~~v~~l~L~~~~~~~~~~~~~~~~~~l~~L~~L~  107 (1077)
                      +++|++||++||+++.+|.+.+.+|.. +  ++||.|.||+|++ .++|+.+||+++.+.+                   
T Consensus        27 ~~~~~~~l~~~~~~~~~~~~~~~~w~~-~--~~~c~w~gv~c~~-~~~v~~L~L~~~~i~~-------------------   83 (968)
T PLN00113         27 HAEELELLLSFKSSINDPLKYLSNWNS-S--ADVCLWQGITCNN-SSRVVSIDLSGKNISG-------------------   83 (968)
T ss_pred             CHHHHHHHHHHHHhCCCCcccCCCCCC-C--CCCCcCcceecCC-CCcEEEEEecCCCccc-------------------
Confidence            578999999999999888888999964 3  7899999999986 5789999998764332                   


Q ss_pred             CCCCCCCccccchhhhhccCCCCCcEEeCCCCCCCchhhHHhh-ccCCCCEEeCCCCcCCCccCCcchhhccCCCCCcEE
Q 001439          108 LRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILSSLA-RLSSLTSLDLSANRLKGSIDIKGPKRLSRLNNLKVF  186 (1077)
Q Consensus       108 Ls~n~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~-~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L  186 (1077)
                              ..+    ..+..+++|++|+|++|.+++.+|..+. ++++|++|+|++|.+.+.+|.      +.+++|++|
T Consensus        84 --------~~~----~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~------~~l~~L~~L  145 (968)
T PLN00113         84 --------KIS----SAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR------GSIPNLETL  145 (968)
T ss_pred             --------cCC----hHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc------cccCCCCEE
Confidence                    221    1256667777777777777666666554 677777777777777766552      446677777


Q ss_pred             ECCCCCCCchhhHhhhccCCCcEEEcCCCCCCCCcChhhhhcccccceeecCCCcCCCCchhhhccCCcccceeeecccc
Q 001439          187 DLSGNLFNNSILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVG  266 (1077)
Q Consensus       187 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~l~~~~  266 (1077)
                      ++++|.+.+..|..++++++|++|++++|.+.+.++ .                                          
T Consensus       146 ~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p-~------------------------------------------  182 (968)
T PLN00113        146 DLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIP-N------------------------------------------  182 (968)
T ss_pred             ECcCCcccccCChHHhcCCCCCEEECccCcccccCC-h------------------------------------------
Confidence            777777666666666666666666555555432221 1                                          


Q ss_pred             cCCcchhhhhcCCCCCcceeccccCcccccccccccCCccCccccEEecchhHhhhhhhhHHHHhccCCCCcEEecccCc
Q 001439          267 IRDGSKLLQSMGSFPSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSS  346 (1077)
Q Consensus       267 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~l~~~l~~L~~L~L~~~~  346 (1077)
                                                                                                      
T Consensus       183 --------------------------------------------------------------------------------  182 (968)
T PLN00113        183 --------------------------------------------------------------------------------  182 (968)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCcccccccccCCCCccEEEccCCcCCCCchhhhcCCCCCcEEecCCCccccccCCccccCCCCcceeecCCCeeeee
Q 001439          347 VSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIP  426 (1077)
Q Consensus       347 ~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~  426 (1077)
                                .++.+++|++|++++|.+++.+|..++++++|++|++++|.+.+.+ +..+.+                 
T Consensus       183 ----------~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~-p~~l~~-----------------  234 (968)
T PLN00113        183 ----------SLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEI-PYEIGG-----------------  234 (968)
T ss_pred             ----------hhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcC-ChhHhc-----------------
Confidence                      2222334444444444444444555555555555555555443322 111111                 


Q ss_pred             cCcccccCCCCccEEecCCCcceeeeeccccCCCCccceeEEeeccCCCCCCccchhccCCCcccEEEeccCCCCCCCch
Q 001439          427 ISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPN  506 (1077)
Q Consensus       427 ~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~p~~l~~~~~L~~L~l~~~~~~~~~p~  506 (1077)
                                                                                                      
T Consensus       235 --------------------------------------------------------------------------------  234 (968)
T PLN00113        235 --------------------------------------------------------------------------------  234 (968)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhhcCCCccEEEccCCCCcCCCccCcCCCCCccEEEcCCCcccccCCchhhccCCCCcEEEcccCcccccCCccCCCCC
Q 001439          507 WLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMN  586 (1077)
Q Consensus       507 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~  586 (1077)
                                                   +++|++|++++|.+++.+|..+.. +++|++|++++|.+.+.+|..+.+++
T Consensus       235 -----------------------------l~~L~~L~L~~n~l~~~~p~~l~~-l~~L~~L~L~~n~l~~~~p~~l~~l~  284 (968)
T PLN00113        235 -----------------------------LTSLNHLDLVYNNLTGPIPSSLGN-LKNLQYLFLYQNKLSGPIPPSIFSLQ  284 (968)
T ss_pred             -----------------------------CCCCCEEECcCceeccccChhHhC-CCCCCEEECcCCeeeccCchhHhhcc
Confidence                                         122333333333333344444443 67778888888888777777777778


Q ss_pred             CCCEEEccCCcCCCCcchHhhhcCCcCcEEEcccccCCCcccccccCCCccCeeeccCccccccCCccccCCCCCcEEEc
Q 001439          587 FLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFL  666 (1077)
Q Consensus       587 ~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L  666 (1077)
                      +|++|++++|.+.+.+|..+ ..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++
T Consensus       285 ~L~~L~Ls~n~l~~~~p~~~-~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L  363 (968)
T PLN00113        285 KLISLDLSDNSLSGEIPELV-IQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDL  363 (968)
T ss_pred             CcCEEECcCCeeccCCChhH-cCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEEC
Confidence            88888888887776666554 35666666666666666555555555555555555555555555555555555555555


Q ss_pred             ccCcCCCCCCccccCCCCccEEECCCCcccCCCCccccCCCCCCEEeccCCcCCcCCCCCCCCccccEEEccCCcccccc
Q 001439          667 SNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQL  746 (1077)
Q Consensus       667 ~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~i  746 (1077)
                      ++|++.+.+|.++..+++|+.|++++|.+.+.+|..+..+++|+.|++++|                       .+.+.+
T Consensus       364 s~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n-----------------------~l~~~~  420 (968)
T PLN00113        364 STNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDN-----------------------SFSGEL  420 (968)
T ss_pred             CCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCC-----------------------EeeeEC
Confidence            555555555555555555555555555555555555555555555555555                       444555


Q ss_pred             CcccccccccccEeccccccCCCCCCccccCCCCCCEEEccCccccccCchhccCCCCCCEEECcCCcCCCCCCcccccC
Q 001439          747 KEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNT  826 (1077)
Q Consensus       747 ~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~  826 (1077)
                      |. .|.++++|+.|++++|.+++.+|..+..+++|+.|++++|++.+.+|..+ ..++|+.||+++|++++.+|..+.++
T Consensus       421 p~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l  498 (968)
T PLN00113        421 PS-EFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSL  498 (968)
T ss_pred             Ch-hHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhh
Confidence            55 78888899999999999999999988899999999999999998888766 46899999999999999999877665


Q ss_pred             cccccccCCCCCCCcccceeecCCCcCCcccccccceeeccccceeecccCcCCCCceEECCCCcCCCCCcccccccccC
Q 001439          827 TLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKI  906 (1077)
Q Consensus       827 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L  906 (1077)
                      .                                                     .|+.|+|++|++++.+|..++++++|
T Consensus       499 ~-----------------------------------------------------~L~~L~Ls~N~l~~~~p~~~~~l~~L  525 (968)
T PLN00113        499 S-----------------------------------------------------ELMQLKLSENKLSGEIPDELSSCKKL  525 (968)
T ss_pred             h-----------------------------------------------------ccCEEECcCCcceeeCChHHcCccCC
Confidence            4                                                     68899999999999999999999999


Q ss_pred             ceeeCcCCcCCCCCCccccCCCCCCeEeCCCCcCcccCCCcccCCCCcceEEcccccccccCCccccccCCCCcccccCC
Q 001439          907 QTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQFATFNESSYEGN  986 (1077)
Q Consensus       907 ~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~l~ls~N~l~g~~p~~~~~~~~~~~~~~~gN  986 (1077)
                      ++|+|++|.++|.+|..|+.+++|+.|||++|+++|.+|..+..+++|+++++++|+++|.+|. .++|.++...++.||
T Consensus       526 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~-~~~~~~~~~~~~~~n  604 (968)
T PLN00113        526 VSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPS-TGAFLAINASAVAGN  604 (968)
T ss_pred             CEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCC-cchhcccChhhhcCC
Confidence            9999999999999999999999999999999999999999999999999999999999999998 788999999999999


Q ss_pred             CCCCCCC
Q 001439          987 PFLCGPP  993 (1077)
Q Consensus       987 ~~lC~~~  993 (1077)
                      |.+||.+
T Consensus       605 ~~lc~~~  611 (968)
T PLN00113        605 IDLCGGD  611 (968)
T ss_pred             ccccCCc
Confidence            9999864

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=2e-56  Score=572.19  Aligned_cols=519  Identities=30%  Similarity=0.487  Sum_probs=424.8

Q ss_pred             CCccEEEccCCcCCCCchhhhcCCCCCcEEecCCCccccccCCccccCCCCcceeecCCCeeeeecCcccccCCCCccEE
Q 001439          362 VHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIF  441 (1077)
Q Consensus       362 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l  441 (1077)
                      .+++.|++++|.+++.++..+..+++|+.|++++|.+.+.++...+..+++|++|++++|.+++.++.   ..++     
T Consensus        69 ~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~---~~l~-----  140 (968)
T PLN00113         69 SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR---GSIP-----  140 (968)
T ss_pred             CcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc---cccC-----
Confidence            46777888888887777777888888888888888877777555555777788888877777654442   1223     


Q ss_pred             ecCCCcceeeeeccccCCCCccceeEEeeccCCCCCCccchhccCCCcccEEEeccCCCCCCCchhhhhcCCCccEEEcc
Q 001439          442 DAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLV  521 (1077)
Q Consensus       442 ~l~~n~l~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~p~~l~~~~~L~~L~l~~~~~~~~~p~~~~~~~~~L~~L~l~  521 (1077)
                                                                     +|++|++++|.+.+.+|.. ++++++|++|+++
T Consensus       141 -----------------------------------------------~L~~L~Ls~n~~~~~~p~~-~~~l~~L~~L~L~  172 (968)
T PLN00113        141 -----------------------------------------------NLETLDLSNNMLSGEIPND-IGSFSSLKVLDLG  172 (968)
T ss_pred             -----------------------------------------------CCCEEECcCCcccccCChH-HhcCCCCCEEECc
Confidence                                                           4445555555555555544 4566666666666


Q ss_pred             CCCCcCCCccCcCCCCCccEEEcCCCcccccCCchhhccCCCCcEEEcccCcccccCCccCCCCCCCCEEEccCCcCCCC
Q 001439          522 NDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGE  601 (1077)
Q Consensus       522 ~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~  601 (1077)
                      +|.+.+..+..+..+++|++|++++|.+++.+|..+.. +++|++|++++|.+.+.+|..++++++|++|++++|.+++.
T Consensus       173 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~-l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~  251 (968)
T PLN00113        173 GNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQ-MKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGP  251 (968)
T ss_pred             cCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcC-cCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccc
Confidence            66666666666667777777777777777777776655 77778888887777777777777778888888888877766


Q ss_pred             cchHhhhcCCcCcEEEcccccCCCcccccccCCCccCeeeccCccccccCCccccCCCCCcEEEcccCcCCCCCCccccC
Q 001439          602 IPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGN  681 (1077)
Q Consensus       602 ip~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~  681 (1077)
                      +|..+ ..+++|++|++++|.+.+..|..+.++++|++|++++|.+.+.+|..+..+++|+.|++++|.+.+..|.++..
T Consensus       252 ~p~~l-~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~  330 (968)
T PLN00113        252 IPSSL-GNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTS  330 (968)
T ss_pred             cChhH-hCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhc
Confidence            77654 46777888888888877777777777888888888888888778887888888888888888888888888888


Q ss_pred             CCCccEEECCCCcccCCCCccccCCCCCCEEeccCCcCCcCCCCCC-CCccccEEEccCCccccccCcccccccccccEe
Q 001439          682 LTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCY-DFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMIL  760 (1077)
Q Consensus       682 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~-~~~~L~~L~l~~n~~~~~i~~~~~~~~~~L~~L  760 (1077)
                      +++|+.|++++|.+.+.+|..+..+++|+.|++++|++++.+|..+ ..++|+.+++++|.+.+.+|. .+..+++|+.|
T Consensus       331 l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~-~~~~~~~L~~L  409 (968)
T PLN00113        331 LPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPK-SLGACRSLRRV  409 (968)
T ss_pred             CCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCH-HHhCCCCCCEE
Confidence            8888888888888888888888888888888888888888777766 667888888888888888887 89999999999


Q ss_pred             ccccccCCCCCCccccCCCCCCEEEccCccccccCchhccCCCCCCEEECcCCcCCCCCCcccccCcccccccCCCCCCC
Q 001439          761 DLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQP  840 (1077)
Q Consensus       761 ~l~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~  840 (1077)
                      ++++|++++.+|..+..+++|+.|++++|.+++.+|..+..+++|+.|++++|++.+.+|..+..               
T Consensus       410 ~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~---------------  474 (968)
T PLN00113        410 RLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGS---------------  474 (968)
T ss_pred             ECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccccc---------------
Confidence            99999999999999999999999999999999999999999999999999999999888875421               


Q ss_pred             cccceeecCCCcCCcccccccceeeccccceeecccCcCCCCceEECCCCcCCCCCcccccccccCceeeCcCCcCCCCC
Q 001439          841 FETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPI  920 (1077)
Q Consensus       841 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~  920 (1077)
                                                             ..|+.||+++|++++.+|..+.++++|+.|+|++|++++.+
T Consensus       475 ---------------------------------------~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~  515 (968)
T PLN00113        475 ---------------------------------------KRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEI  515 (968)
T ss_pred             ---------------------------------------ccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeC
Confidence                                                   16889999999999999999999999999999999999999


Q ss_pred             CccccCCCCCCeEeCCCCcCcccCCCcccCCCCcceEEcccccccccCCccccccCCCCcccccCCCCCCCCC
Q 001439          921 PSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQFATFNESSYEGNPFLCGPP  993 (1077)
Q Consensus       921 p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~l~ls~N~l~g~~p~~~~~~~~~~~~~~~gN~~lC~~~  993 (1077)
                      |..++++++|++|+|++|+++|.+|..+..+++|+.|++++|+++|.+|..+..+..+..+++.+|+..+..|
T Consensus       516 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p  588 (968)
T PLN00113        516 PDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLP  588 (968)
T ss_pred             ChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCC
Confidence            9999999999999999999999999999999999999999999999999988888899999999999876444

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=9.7e-39  Score=339.55  Aligned_cols=374  Identities=23%  Similarity=0.252  Sum_probs=252.8

Q ss_pred             CcEEEcccCcccccCCccCCCCCCCCEEEccCCcCCCCcchHhhhcCCcCcEEEcccccCCCcccccccCCCccCeeecc
Q 001439          564 LTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLE  643 (1077)
Q Consensus       564 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  643 (1077)
                      -+.|++++|.+..+.+..|.++++|+.+++.+|.++ .||... ....+|+.|+|.+|.|+.+..+.+..++.|+.|||+
T Consensus        80 t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~-~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLS  157 (873)
T KOG4194|consen   80 TQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFG-HESGHLEKLDLRHNLISSVTSEELSALPALRSLDLS  157 (873)
T ss_pred             eeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hccccc-ccccceeEEeeeccccccccHHHHHhHhhhhhhhhh
Confidence            344555555555555555555555555555555555 555433 123345555555555555555555555555666666


Q ss_pred             CccccccCCccccCCCCCcEEEcccCcCCCCCCccccCCCCccEEECCCCcccCCCCccccCCCCCCEEeccCCcCCcCC
Q 001439          644 GNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSL  723 (1077)
Q Consensus       644 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~  723 (1077)
                      .|.|+.+...+|..-.++++|+|++|+++..-...|.++.+|..|.|+.|+++...+..|.++++|+.|+|..|+|.-.-
T Consensus       158 rN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive  237 (873)
T KOG4194|consen  158 RNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVE  237 (873)
T ss_pred             hchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeeh
Confidence            65555444444544455666666666665555555555556666666666665555555555666666666666554331


Q ss_pred             CCCC-CCccccEEEccCCccccccCcccccccccccEeccccccCCCCCCccccCCCCCCEEEccCccccccCchhccCC
Q 001439          724 PSCY-DFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRL  802 (1077)
Q Consensus       724 p~~~-~~~~L~~L~l~~n~~~~~i~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l  802 (1077)
                      -..| ++++|+.|.+..|.+. .+..++|..+.++++|+|+.|+++..-..|+.++++|+.|+|++|.|..+-++++..+
T Consensus       238 ~ltFqgL~Sl~nlklqrN~I~-kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Wsft  316 (873)
T KOG4194|consen  238 GLTFQGLPSLQNLKLQRNDIS-KLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFT  316 (873)
T ss_pred             hhhhcCchhhhhhhhhhcCcc-cccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhc
Confidence            2222 5566666666666664 4556688888888888888888887777888888888888888888887778888888


Q ss_pred             CCCCEEECcCCcCCCCCCcccccCcccccccCCCCCCCcccceeecCCCcCCcccccccceeeccccceeecccCcCCCC
Q 001439          803 NQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLL  882 (1077)
Q Consensus       803 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L  882 (1077)
                      ++|++|||++|+++...+..|..+.                                                     .|
T Consensus       317 qkL~~LdLs~N~i~~l~~~sf~~L~-----------------------------------------------------~L  343 (873)
T KOG4194|consen  317 QKLKELDLSSNRITRLDEGSFRVLS-----------------------------------------------------QL  343 (873)
T ss_pred             ccceeEeccccccccCChhHHHHHH-----------------------------------------------------Hh
Confidence            8888888888888877776665544                                                     57


Q ss_pred             ceEECCCCcCCCCCcccccccccCceeeCcCCcCCCCCCc---cccCCCCCCeEeCCCCcCcccCCCcccCCCCcceEEc
Q 001439          883 SGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPS---TFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSV  959 (1077)
Q Consensus       883 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~---~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~l~l  959 (1077)
                      +.|.|++|++...-...|..+++|+.|||++|.+++.|.+   .|..|++|+.|+|.+|+|.......|..+..|+.|||
T Consensus       344 e~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL  423 (873)
T KOG4194|consen  344 EELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDL  423 (873)
T ss_pred             hhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecC
Confidence            7788888888766666788888888888888888876654   3677888888888888888555567888888888888


Q ss_pred             ccccccccCCccccccCCCCcccccCCCCCCCCCC
Q 001439          960 AYNNLSGKIPERAAQFATFNESSYEGNPFLCGPPL  994 (1077)
Q Consensus       960 s~N~l~g~~p~~~~~~~~~~~~~~~gN~~lC~~~l  994 (1077)
                      .+|.+...-|+.+.++ .+..+.+.--.++|+|.+
T Consensus       424 ~~NaiaSIq~nAFe~m-~Lk~Lv~nSssflCDCql  457 (873)
T KOG4194|consen  424 GDNAIASIQPNAFEPM-ELKELVMNSSSFLCDCQL  457 (873)
T ss_pred             CCCcceeecccccccc-hhhhhhhcccceEEeccH
Confidence            8888887777767666 666666666677888865

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=8.4e-37  Score=324.85  Aligned_cols=373  Identities=27%  Similarity=0.276  Sum_probs=304.1

Q ss_pred             CCccEEEcCCCcccccCCchhhccCCCCcEEEcccCcccccCCccCCCCCCCCEEEccCCcCCCCcchHhhhcCCcCcEE
Q 001439          537 KQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSL  616 (1077)
Q Consensus       537 ~~L~~L~l~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L  616 (1077)
                      +..+.||+++|++. .+....+..+++|+++++..|.++ .+|..-....+|+.|+|.+|.|+ .+.....+.++.|+.|
T Consensus        78 ~~t~~LdlsnNkl~-~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~-sv~se~L~~l~alrsl  154 (873)
T KOG4194|consen   78 SQTQTLDLSNNKLS-HIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLIS-SVTSEELSALPALRSL  154 (873)
T ss_pred             cceeeeeccccccc-cCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccc-cccHHHHHhHhhhhhh
Confidence            34567888888887 555555556888888888888887 67765555666888888888887 6766666778888888


Q ss_pred             EcccccCCCcccccccCCCccCeeeccCccccccCCccccCCCCCcEEEcccCcCCCCCCccccCCCCccEEECCCCccc
Q 001439          617 ALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIE  696 (1077)
Q Consensus       617 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~  696 (1077)
                      ||+.|.|+.+....|..-.++++|+|++|.|+..-...|..+.+|..|.|+.|+++...+..|.++++|+.|+|..|+|.
T Consensus       155 DLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~ir  234 (873)
T KOG4194|consen  155 DLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIR  234 (873)
T ss_pred             hhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhcccccee
Confidence            88888888877777777778888888888888777788888888888888888888666677888888888888888887


Q ss_pred             CCCCccccCCCCCCEEeccCCcCCcCCCCCC-CCccccEEEccCCccccccCcccccccccccEeccccccCCCCCCccc
Q 001439          697 GPIPLEFCQLRILQILDISDNNISGSLPSCY-DFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRV  775 (1077)
Q Consensus       697 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~-~~~~L~~L~l~~n~~~~~i~~~~~~~~~~L~~L~l~~n~l~~~~p~~~  775 (1077)
                      -..--+|.++++|+.|.+..|.++..-...| .+.++++|+|..|++. .+..+++.++++|+.|++++|.|..+.++.+
T Consensus       235 ive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~-~vn~g~lfgLt~L~~L~lS~NaI~rih~d~W  313 (873)
T KOG4194|consen  235 IVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQ-AVNEGWLFGLTSLEQLDLSYNAIQRIHIDSW  313 (873)
T ss_pred             eehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhh-hhhcccccccchhhhhccchhhhheeecchh
Confidence            5445678888888888888888887666666 7888888888888886 4555588899999999999999998888988


Q ss_pred             cCCCCCCEEEccCccccccCchhccCCCCCCEEECcCCcCCCCCCcccccCcccccccCCCCCCCcccceeecCCCcCCc
Q 001439          776 DGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDP  855 (1077)
Q Consensus       776 ~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  855 (1077)
                      ...++|++|+|++|+++...+.+|..+.+|+.|.|++|.++..-...|..++                            
T Consensus       314 sftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~ls----------------------------  365 (873)
T KOG4194|consen  314 SFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLS----------------------------  365 (873)
T ss_pred             hhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhh----------------------------
Confidence            8899999999999999988888899999999999999988755444444333                            


Q ss_pred             ccccccceeeccccceeecccCcCCCCceEECCCCcCCCCCcc---cccccccCceeeCcCCcCCCCCCccccCCCCCCe
Q 001439          856 KKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPP---QIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIES  932 (1077)
Q Consensus       856 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~---~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  932 (1077)
                                               +|+.|||++|.+++.|.+   .|.++++|+.|+|.+|++..+....|..+.+||.
T Consensus       366 -------------------------sL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~  420 (873)
T KOG4194|consen  366 -------------------------SLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEH  420 (873)
T ss_pred             -------------------------hhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccce
Confidence                                     688899999999877654   4888999999999999999777788999999999


Q ss_pred             EeCCCCcCcccCCCcccCCCCcceEEccccccccc
Q 001439          933 LDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGK  967 (1077)
Q Consensus       933 LdLs~N~l~~~ip~~l~~l~~L~~l~ls~N~l~g~  967 (1077)
                      |||.+|.|...-|..|..+ .|+.|-+..-.+-+.
T Consensus       421 LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssflCD  454 (873)
T KOG4194|consen  421 LDLGDNAIASIQPNAFEPM-ELKELVMNSSSFLCD  454 (873)
T ss_pred             ecCCCCcceeecccccccc-hhhhhhhcccceEEe
Confidence            9999999998889999988 888887765555443

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=4e-38  Score=320.88  Aligned_cols=497  Identities=28%  Similarity=0.382  Sum_probs=278.0

Q ss_pred             CCCcEEecccCcCCCCcccccccccCCCCccEEEccCCcCCCCchhhhcCCCCCcEEecCCCccccccCCccccCCCCcc
Q 001439          335 PSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIE  414 (1077)
Q Consensus       335 ~~L~~L~L~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~i~~~~l~~l~~L~  414 (1077)
                      ..++.+.+++|.+....+    .+..+..|..|++++|+++ ..|++++.+..++.++++.|++. .+ |..+..+.++.
T Consensus        45 v~l~~lils~N~l~~l~~----dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~l-p~~i~s~~~l~  117 (565)
T KOG0472|consen   45 VDLQKLILSHNDLEVLRE----DLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-EL-PEQIGSLISLV  117 (565)
T ss_pred             cchhhhhhccCchhhccH----hhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hc-cHHHhhhhhhh
Confidence            345555565555443332    3445566666666666665 45556666666666666666654 34 45555555666


Q ss_pred             eeecCCCeeeeecCcccccCCCCccEEecCCCcceeeeeccccCCCCccceeEEeeccCCCCCCccchhccCCCcccEEE
Q 001439          415 DLILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVR  494 (1077)
Q Consensus       415 ~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~p~~l~~~~~L~~L~  494 (1077)
                      .++.++|.+.                                                      ++|+.++.+..++.++
T Consensus       118 ~l~~s~n~~~------------------------------------------------------el~~~i~~~~~l~dl~  143 (565)
T KOG0472|consen  118 KLDCSSNELK------------------------------------------------------ELPDSIGRLLDLEDLD  143 (565)
T ss_pred             hhhcccccee------------------------------------------------------ecCchHHHHhhhhhhh
Confidence            6666555443                                                      1223333344445555


Q ss_pred             eccCCCCCCCchhhhhcCCCccEEEccCCCCcCCCccCcCCCCCccEEEcCCCcccccCCchhhccCCCCcEEEcccCcc
Q 001439          495 LSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNAL  574 (1077)
Q Consensus       495 l~~~~~~~~~p~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l  574 (1077)
                      ..+|++....++  +..+.++..+++.+|.+....+.-.. ++.|+.+|...|-+. .+|.+++. +.+|+.|++..|++
T Consensus       144 ~~~N~i~slp~~--~~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L~-tlP~~lg~-l~~L~~LyL~~Nki  218 (565)
T KOG0472|consen  144 ATNNQISSLPED--MVNLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNLLE-TLPPELGG-LESLELLYLRRNKI  218 (565)
T ss_pred             ccccccccCchH--HHHHHHHHHhhccccchhhCCHHHHH-HHHHHhcccchhhhh-cCChhhcc-hhhhHHHHhhhccc
Confidence            555554433332  22444445455544444433332222 455555555555554 55555554 55555566666655


Q ss_pred             cccCCccCCCCCCCCEEEccCCcCCCCcchHhhhcCCcCcEEEcccccCCCcccccccCCCccCeeeccCccccccCCcc
Q 001439          575 DGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQS  654 (1077)
Q Consensus       575 ~~~~p~~~~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  654 (1077)
                      . ..| .|.+|..|++|.+..|.+. .+|......++++.+||+.+|+++                         ..|+.
T Consensus       219 ~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-------------------------e~Pde  270 (565)
T KOG0472|consen  219 R-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-------------------------EVPDE  270 (565)
T ss_pred             c-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-------------------------cCchH
Confidence            5 334 5555555666666666555 555555555555555555555554                         34444


Q ss_pred             ccCCCCCcEEEcccCcCCCCCCccccCCCCccEEECCCCcccCCCCccccCCC---CCCEE-------eccCC-------
Q 001439          655 LSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLR---ILQIL-------DISDN-------  717 (1077)
Q Consensus       655 l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~---~L~~L-------~Ls~n-------  717 (1077)
                      ++-+.+|++||+|+|.++ ..|..++++ .|+.|.+.+|.+..+ -..+-+..   -|++|       -++..       
T Consensus       271 ~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTi-Rr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~  347 (565)
T KOG0472|consen  271 ICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTI-RREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETA  347 (565)
T ss_pred             HHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHH-HHHHHcccHHHHHHHHHHhhccCCCCCCccccccc
Confidence            444444444444444444 344444444 444444444444311 00000000   01110       00000       


Q ss_pred             --cCCcCCCCCCCCccccEEEccCCccccccCcccccccc--cccEeccccccCCCCCCccccCCCCCCEEEccCccccc
Q 001439          718 --NISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCL--TLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEG  793 (1077)
Q Consensus       718 --~l~~~~p~~~~~~~L~~L~l~~n~~~~~i~~~~~~~~~--~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~  793 (1077)
                        ...+..|......+.+.|++++-+++ .+|.+.|....  -...++++.|++. .+|..+..+..+.+.-+..|+..+
T Consensus       348 ~t~~~~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~is  425 (565)
T KOG0472|consen  348 MTLPSESFPDIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKIS  425 (565)
T ss_pred             CCCCCCcccchhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCccc
Confidence              01122233334455666666666664 55664444332  2667777887776 667666666555543333333444


Q ss_pred             cCchhccCCCCCCEEECcCCcCCCCCCcccccCcccccccCCCCCCCcccceeecCCCcCCcccccccceeeccccceee
Q 001439          794 EVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYT  873 (1077)
Q Consensus       794 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  873 (1077)
                      .+|..++.+++|..|+|++|.+. .+|..++.+.                                              
T Consensus       426 fv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv----------------------------------------------  458 (565)
T KOG0472|consen  426 FVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLV----------------------------------------------  458 (565)
T ss_pred             cchHHHHhhhcceeeecccchhh-hcchhhhhhh----------------------------------------------
Confidence            77777778888888888877665 4454443332                                              


Q ss_pred             cccCcCCCCceEECCCCcCCCCCcccccccccCceeeCcCCcCCCCCCccccCCCCCCeEeCCCCcCcccCCCcccCCCC
Q 001439          874 YQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNT  953 (1077)
Q Consensus       874 ~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~  953 (1077)
                             .|+.||+|.|+|. .+|..+..++.++.+-.++|++....|+.+.+|.+|..|||.+|.+. .||..++++++
T Consensus       459 -------~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~Lgnmtn  529 (565)
T KOG0472|consen  459 -------RLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTN  529 (565)
T ss_pred             -------hhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccc
Confidence                   4677888888776 67888888888888777788888777777888888999999998888 78888899999


Q ss_pred             cceEEcccccccccCCccccccCCCCcccccCCC
Q 001439          954 LAVFSVAYNNLSGKIPERAAQFATFNESSYEGNP  987 (1077)
Q Consensus       954 L~~l~ls~N~l~g~~p~~~~~~~~~~~~~~~gN~  987 (1077)
                      |+.|++++|++. ..|..+---.+...++|-+++
T Consensus       530 L~hLeL~gNpfr-~Pr~~iLmkgT~aiL~ylrdr  562 (565)
T KOG0472|consen  530 LRHLELDGNPFR-QPRHQILMKGTAAILSYLRDR  562 (565)
T ss_pred             eeEEEecCCccC-CCHHHHhccChHHHHHHhccc
Confidence            999999999887 333322223344444454443

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=3.2e-37  Score=314.27  Aligned_cols=475  Identities=27%  Similarity=0.363  Sum_probs=269.0

Q ss_pred             CCccEEEccCCcCCCCchhhhcCCCCCcEEecCCCccccccCCccccCCCCcceeecCCCeeeeecCcccccCCCCccEE
Q 001439          362 VHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIF  441 (1077)
Q Consensus       362 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l  441 (1077)
                      ..|+.+.+++|.+. .+...+.++..|+.|++.+|+++ .. |.+++.+..++.++.+.|++.                 
T Consensus        45 v~l~~lils~N~l~-~l~~dl~nL~~l~vl~~~~n~l~-~l-p~aig~l~~l~~l~vs~n~ls-----------------  104 (565)
T KOG0472|consen   45 VDLQKLILSHNDLE-VLREDLKNLACLTVLNVHDNKLS-QL-PAAIGELEALKSLNVSHNKLS-----------------  104 (565)
T ss_pred             cchhhhhhccCchh-hccHhhhcccceeEEEeccchhh-hC-CHHHHHHHHHHHhhcccchHh-----------------
Confidence            56888888888887 34445778888888888888876 34 555666666666666655433                 


Q ss_pred             ecCCCcceeeeeccccCCCCccceeEEeeccCCCCCCccchhccCCCcccEEEeccCCCCCCCchhhhhcCCCccEEEcc
Q 001439          442 DAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLV  521 (1077)
Q Consensus       442 ~l~~n~l~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~p~~l~~~~~L~~L~l~~~~~~~~~p~~~~~~~~~L~~L~l~  521 (1077)
                                                           .+|..+.                         ...+++.++++
T Consensus       105 -------------------------------------~lp~~i~-------------------------s~~~l~~l~~s  122 (565)
T KOG0472|consen  105 -------------------------------------ELPEQIG-------------------------SLISLVKLDCS  122 (565)
T ss_pred             -------------------------------------hccHHHh-------------------------hhhhhhhhhcc
Confidence                                                 1222222                         23333333333


Q ss_pred             CCCCcCCCccCcCCCCCccEEEcCCCcccccCCchhhccCCCCcEEEcccCcccccCCccCCCCCCCCEEEccCCcCCCC
Q 001439          522 NDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGE  601 (1077)
Q Consensus       522 ~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~  601 (1077)
                      .|.+... +..++.+..+..++..+|+++ ..|..++. +.++..+++.+|.++...|..+ +++.|++||...|-+. .
T Consensus       123 ~n~~~el-~~~i~~~~~l~dl~~~~N~i~-slp~~~~~-~~~l~~l~~~~n~l~~l~~~~i-~m~~L~~ld~~~N~L~-t  197 (565)
T KOG0472|consen  123 SNELKEL-PDSIGRLLDLEDLDATNNQIS-SLPEDMVN-LSKLSKLDLEGNKLKALPENHI-AMKRLKHLDCNSNLLE-T  197 (565)
T ss_pred             ccceeec-CchHHHHhhhhhhhccccccc-cCchHHHH-HHHHHHhhccccchhhCCHHHH-HHHHHHhcccchhhhh-c
Confidence            3332211 112233344555555555555 45555544 4555555555555553333222 2555555555555554 5


Q ss_pred             cchHhhhcCCcCcEEEcccccCCCcccccccCCCccCeeeccCccccccCCccc-cCCCCCcEEEcccCcCCCCCCcccc
Q 001439          602 IPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSL-SKCSSLQGLFLSNNSLSGKIPRWLG  680 (1077)
Q Consensus       602 ip~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l-~~l~~L~~L~L~~n~l~~~~p~~l~  680 (1077)
                      +|+.+. ++.+|+.|++..|++....  .|.++..|++++++.|++. .+|... .+++++.+||+.+|++. ..|+.+.
T Consensus       198 lP~~lg-~l~~L~~LyL~~Nki~~lP--ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~c  272 (565)
T KOG0472|consen  198 LPPELG-GLESLELLYLRRNKIRFLP--EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEIC  272 (565)
T ss_pred             CChhhc-chhhhHHHHhhhcccccCC--CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHH
Confidence            555552 4555555555555554322  4455555555555555555 333322 24555555555555555 4555555


Q ss_pred             CCCCccEEECCCCcccCCCCccccCCCCCCEEeccCCcCCcCCCCCCCC---ccccEEE-------ccCC----cccccc
Q 001439          681 NLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDF---VCIEQVH-------LSKN----MLHGQL  746 (1077)
Q Consensus       681 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~---~~L~~L~-------l~~n----~~~~~i  746 (1077)
                      -+.+|++||+++|.++ .+|.+++++ .|+.|-+.+|.+...-.+....   .-|++|.       ++..    .-.+..
T Consensus       273 lLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~  350 (565)
T KOG0472|consen  273 LLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTL  350 (565)
T ss_pred             HhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCC
Confidence            5555555555555554 334455555 5555555555443211110000   0000000       0000    000011


Q ss_pred             Cccc---ccccccccEeccccccCCCCCCccccCCCC---CCEEEccCccccccCchhccCCCCCCE-EECcCCcCCCCC
Q 001439          747 KEGT---FFNCLTLMILDLSYNHLNGNIPDRVDGLSQ---LSYLILAHNNLEGEVPIQLCRLNQLQL-LDLSNNNLHGHI  819 (1077)
Q Consensus       747 ~~~~---~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~---L~~L~L~~N~l~~~~p~~~~~l~~L~~-L~Ls~N~l~~~~  819 (1077)
                      +...   .....+.+.|++++-+++ .+|+....-..   ....++++|++. ++|..+..++.++. +++++|.+ +.+
T Consensus       351 ~~~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~i-sfv  427 (565)
T KOG0472|consen  351 PSESFPDIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKI-SFV  427 (565)
T ss_pred             CCCcccchhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCcc-ccc
Confidence            1111   112334455555555555 33433222222   445566666655 55555544444432 23333332 233


Q ss_pred             CcccccCcccccccCCCCCCCcccceeecCCCcCCcccccccceeeccccceeecccCcCCCCceEECCCCcCCCCCccc
Q 001439          820 PSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQ  899 (1077)
Q Consensus       820 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~  899 (1077)
                      |..+..+                                                     +.++.|+|++|-+. .+|.+
T Consensus       428 ~~~l~~l-----------------------------------------------------~kLt~L~L~NN~Ln-~LP~e  453 (565)
T KOG0472|consen  428 PLELSQL-----------------------------------------------------QKLTFLDLSNNLLN-DLPEE  453 (565)
T ss_pred             hHHHHhh-----------------------------------------------------hcceeeecccchhh-hcchh
Confidence            4333322                                                     26888999999887 78999


Q ss_pred             ccccccCceeeCcCCcCCCCCCccccCCCCCCeEeCCCCcCcccCCCcccCCCCcceEEcccccccccCCccccccCCCC
Q 001439          900 IGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQFATFN  979 (1077)
Q Consensus       900 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~l~ls~N~l~g~~p~~~~~~~~~~  979 (1077)
                      ++.+..||.||+|+|+|. .+|..+-.+..||.+-.++|++...-|+.+.++..|.+||+.+|.+....|. .+.+.++.
T Consensus       454 ~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~-LgnmtnL~  531 (565)
T KOG0472|consen  454 MGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQIPPI-LGNMTNLR  531 (565)
T ss_pred             hhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchhhCChh-hcccccee
Confidence            999999999999999999 8899888888899998899999866666699999999999999999966565 99999999


Q ss_pred             cccccCCCCC
Q 001439          980 ESSYEGNPFL  989 (1077)
Q Consensus       980 ~~~~~gN~~l  989 (1077)
                      .+.+.|||+-
T Consensus       532 hLeL~gNpfr  541 (565)
T KOG0472|consen  532 HLELDGNPFR  541 (565)
T ss_pred             EEEecCCccC
Confidence            9999999976

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.97  E-value=1.4e-32  Score=294.00  Aligned_cols=369  Identities=28%  Similarity=0.404  Sum_probs=202.6

Q ss_pred             CCCccEEEcCCCccc-ccCCchhhccCCCCcEEEcccCcccccCCccCCCCCCCCEEEccCCcCCCCcchHhhhcCCcCc
Q 001439          536 HKQLRLLDVSKNNFQ-GHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLR  614 (1077)
Q Consensus       536 ~~~L~~L~l~~n~l~-~~i~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~  614 (1077)
                      ++-.+-.|+++|.++ +.+|..+-. +++++.|.|...++. .+|+.++.+.+|++|.+++|++. .+...+ +.++.|+
T Consensus         6 LpFVrGvDfsgNDFsg~~FP~~v~q-Mt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGEL-s~Lp~LR   81 (1255)
T KOG0444|consen    6 LPFVRGVDFSGNDFSGDRFPHDVEQ-MTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGEL-SDLPRLR   81 (1255)
T ss_pred             cceeecccccCCcCCCCcCchhHHH-hhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhh-ccchhhH
Confidence            344556677777766 345555543 566666666666665 55666666666666666666665 333332 2455555


Q ss_pred             EEEcccccCCC-cccccccCCCccCeeeccCccccccCCccccCCCCCcEEEcccCcCCCCCC-ccccCCCCccEEECCC
Q 001439          615 SLALSNNNLEG-HMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIP-RWLGNLTVLRHIIMPK  692 (1077)
Q Consensus       615 ~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~l~~  692 (1077)
                      .+.+..|++.. -+|..++.+..|..|||++|++. ..|..+...+++-+|+||+|+|. .+| .-|.+++.|-.|+|++
T Consensus        82 sv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~  159 (1255)
T KOG0444|consen   82 SVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSN  159 (1255)
T ss_pred             HHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhcccc
Confidence            55555555532 23344445555555555555555 34445555555555555555554 233 2334455555555555


Q ss_pred             CcccCCCCccccCCCCCCEEeccCCcCCcCCCCCCCCccccEEEccCCccccccCcccccccccccEeccccccCC-CCC
Q 001439          693 NHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLN-GNI  771 (1077)
Q Consensus       693 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~i~~~~~~~~~~L~~L~l~~n~l~-~~~  771 (1077)
                      |++. .+|..+..+..|++|+|++|.+...                        .-..+..+++|++|.+++.+-+ ..+
T Consensus       160 NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hf------------------------QLrQLPsmtsL~vLhms~TqRTl~N~  214 (1255)
T KOG0444|consen  160 NRLE-MLPPQIRRLSMLQTLKLSNNPLNHF------------------------QLRQLPSMTSLSVLHMSNTQRTLDNI  214 (1255)
T ss_pred             chhh-hcCHHHHHHhhhhhhhcCCChhhHH------------------------HHhcCccchhhhhhhcccccchhhcC
Confidence            5554 3344444555555555555544311                        0012333455566666554322 345


Q ss_pred             CccccCCCCCCEEEccCccccccCchhccCCCCCCEEECcCCcCCCCCCcccccCcccccccCCCCCCCcccceeecCCC
Q 001439          772 PDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGM  851 (1077)
Q Consensus       772 p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  851 (1077)
                      |..+.++.+|..++++.|.+. ..|+.+.++++|+.|+||+|+|+..- -+.+.+                         
T Consensus       215 Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~iteL~-~~~~~W-------------------------  267 (1255)
T KOG0444|consen  215 PTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKITELN-MTEGEW-------------------------  267 (1255)
T ss_pred             CCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCceeeee-ccHHHH-------------------------
Confidence            666666666666666666665 56666666666666666666655210 000000                         


Q ss_pred             cCCcccccccceeeccccceeecccCcCCCCceEECCCCcCCCCCcccccccccCceeeCcCCcCC-CCCCccccCCCCC
Q 001439          852 DVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLA-GPIPSTFSNLRNI  930 (1077)
Q Consensus       852 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L  930 (1077)
                                                  ..+++|+||+|+++ .+|+++..|+.|+.|.+.+|.++ .-||+.+++|.+|
T Consensus       268 ----------------------------~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~L  318 (1255)
T KOG0444|consen  268 ----------------------------ENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQL  318 (1255)
T ss_pred             ----------------------------hhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhh
Confidence                                        04556666666666 55666666666666666666554 2456666666666


Q ss_pred             CeEeCCCCcCcccCCCcccCCCCcceEEcccccccccCCccccccCCCCcccccCCCCCCCCC
Q 001439          931 ESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQFATFNESSYEGNPFLCGPP  993 (1077)
Q Consensus       931 ~~LdLs~N~l~~~ip~~l~~l~~L~~l~ls~N~l~g~~p~~~~~~~~~~~~~~~gN~~lC~~~  993 (1077)
                      +.+..++|.+. ..|..+..+..|+.|.|++|++.. .|+.+.-++.+..+++..||.+.-+|
T Consensus       319 evf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLiT-LPeaIHlL~~l~vLDlreNpnLVMPP  379 (1255)
T KOG0444|consen  319 EVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLIT-LPEAIHLLPDLKVLDLRENPNLVMPP  379 (1255)
T ss_pred             HHHHhhccccc-cCchhhhhhHHHHHhcccccceee-chhhhhhcCCcceeeccCCcCccCCC
Confidence            66666666665 566666666666666666666653 45545555666666666666665544

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.96  E-value=2.9e-32  Score=291.70  Aligned_cols=366  Identities=24%  Similarity=0.328  Sum_probs=277.0

Q ss_pred             cCCCccEEEccCCCCcC-CCccCcCCCCCccEEEcCCCcccccCCchhhccCCCCcEEEcccCcccccCCccCCCCCCCC
Q 001439          511 NNTKLRQLSLVNDSLVG-PFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQ  589 (1077)
Q Consensus       511 ~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~  589 (1077)
                      -++-.+-+++++|.+.| ..|.....+++++.|.+...++. .+|.++.. +.+|++|.+++|++. .+-..+..++.|+
T Consensus         5 VLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~-lqkLEHLs~~HN~L~-~vhGELs~Lp~LR   81 (1255)
T KOG0444|consen    5 VLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSR-LQKLEHLSMAHNQLI-SVHGELSDLPRLR   81 (1255)
T ss_pred             ccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHH-HhhhhhhhhhhhhhH-hhhhhhccchhhH
Confidence            45667788999999984 56777788999999999999997 89999987 899999999999998 4556788999999


Q ss_pred             EEEccCCcCCC-CcchHhhhcCCcCcEEEcccccCCCcccccccCCCccCeeeccCccccccCCccccCCCCCcEEEccc
Q 001439          590 FLDLSNNQLTG-EIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSN  668 (1077)
Q Consensus       590 ~L~Ls~n~l~~-~ip~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~  668 (1077)
                      .+++.+|++.. -||..+| .+..|+.|+||+|++.. .|..+..-.++-.|+|++|+|..+...-|.+++.|-.||||+
T Consensus        82 sv~~R~N~LKnsGiP~diF-~l~dLt~lDLShNqL~E-vP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~  159 (1255)
T KOG0444|consen   82 SVIVRDNNLKNSGIPTDIF-RLKDLTILDLSHNQLRE-VPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSN  159 (1255)
T ss_pred             HHhhhccccccCCCCchhc-ccccceeeecchhhhhh-cchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhcccc
Confidence            99999998853 4888887 69999999999999985 567777888999999999999966667788999999999999


Q ss_pred             CcCCCCCCccccCCCCccEEECCCCcccCCCCccccCCCCCCEEeccCCcCC-cCCCCCC-CCccccEEEccCCcccccc
Q 001439          669 NSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNIS-GSLPSCY-DFVCIEQVHLSKNMLHGQL  746 (1077)
Q Consensus       669 n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~p~~~-~~~~L~~L~l~~n~~~~~i  746 (1077)
                      |++. .+|+.+..+..|++|+|++|.+...--..+..+++|++|.+++.+-+ ..+|..+ ++.+|..++++.|.+. .+
T Consensus       160 NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~v  237 (1255)
T KOG0444|consen  160 NRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IV  237 (1255)
T ss_pred             chhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cc
Confidence            9998 78888999999999999999886444444556778888999887654 3345554 6667777777777764 45


Q ss_pred             CcccccccccccEeccccccCCCCCCccccCCCCCCEEEccCccccccCchhccCCCCCCEEECcCCcCCC-CCCccccc
Q 001439          747 KEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHG-HIPSCFDN  825 (1077)
Q Consensus       747 ~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-~~p~~~~~  825 (1077)
                      |+ .+.++++|+.|+|++|+|+ .+.-..+...+|++|+++.|+++ ..|.+++.++.|+.|.+.+|+++- -||+.++.
T Consensus       238 Pe-cly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGK  314 (1255)
T KOG0444|consen  238 PE-CLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGK  314 (1255)
T ss_pred             hH-HHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhh
Confidence            55 6667777777777777776 33344455566777777777776 667777777777777777776652 24444444


Q ss_pred             CcccccccCCCCCCCcccceeecCCCcCCcccccccceeeccccceeecccCcCCCCceEECCCCcCCCCCccccccccc
Q 001439          826 TTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTK  905 (1077)
Q Consensus       826 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~  905 (1077)
                      +.                                                     .|+.+..++|.+. .+|+.+..+..
T Consensus       315 L~-----------------------------------------------------~Levf~aanN~LE-lVPEglcRC~k  340 (1255)
T KOG0444|consen  315 LI-----------------------------------------------------QLEVFHAANNKLE-LVPEGLCRCVK  340 (1255)
T ss_pred             hh-----------------------------------------------------hhHHHHhhccccc-cCchhhhhhHH
Confidence            33                                                     4455556666665 56666666666


Q ss_pred             CceeeCcCCcCCCCCCccccCCCCCCeEeCCCCcCc
Q 001439          906 IQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLS  941 (1077)
Q Consensus       906 L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~  941 (1077)
                      |+.|.|++|++. ..|+.+.-|+.|+.|||..|.--
T Consensus       341 L~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnL  375 (1255)
T KOG0444|consen  341 LQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNL  375 (1255)
T ss_pred             HHHhccccccee-echhhhhhcCCcceeeccCCcCc
Confidence            777777777666 56666666666777777666443

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.96  E-value=7e-32  Score=303.59  Aligned_cols=203  Identities=25%  Similarity=0.324  Sum_probs=137.7

Q ss_pred             CCCCCccEEEcCCCcccccCCchhhccCCCCcEEEcccCcccccCCccCCCCCCCCEEEccCCcCCCCcchHhhhcCCc-
Q 001439          534 HSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVS-  612 (1077)
Q Consensus       534 ~~~~~L~~L~l~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~-  612 (1077)
                      ..+.+|+.++...|+++ .+|..++. ..+|+.|.+..|.+. -+|....+++.|++|+|..|++. .+|..++..... 
T Consensus       261 ~~~~nle~l~~n~N~l~-~lp~ri~~-~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~  336 (1081)
T KOG0618|consen  261 GACANLEALNANHNRLV-ALPLRISR-ITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNAS  336 (1081)
T ss_pred             HhcccceEecccchhHH-hhHHHHhh-hhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhcccc-ccchHHHhhhhHH
Confidence            34555666666666665 77777775 678888888888887 56667777888888888888887 778777665544 


Q ss_pred             CcEEEcccccCCCcccccccCCCccCeeeccCccccccCCccccCCCCCcEEEcccCcCCCCCCccccCCCCccEEECCC
Q 001439          613 LRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPK  692 (1077)
Q Consensus       613 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~  692 (1077)
                      |..|+.+.|++.......-..++.|+.|.+.+|.++...-..+.+...|+.|+|++|++.......+.++..|++|++++
T Consensus       337 l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSG  416 (1081)
T KOG0618|consen  337 LNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSG  416 (1081)
T ss_pred             HHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhccc
Confidence            77777777777655433334566777788888877766666677777788888888877633334566777777777777


Q ss_pred             CcccCCCCccccCCCCCCEEeccCCcCCcCCCCCCCCccccEEEccCCcc
Q 001439          693 NHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNML  742 (1077)
Q Consensus       693 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~L~~L~l~~n~~  742 (1077)
                      |+++ .+|.++..+..|++|...+|.+. .+|+...++.|+.++++.|++
T Consensus       417 NkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fPe~~~l~qL~~lDlS~N~L  464 (1081)
T KOG0618|consen  417 NKLT-TLPDTVANLGRLHTLRAHSNQLL-SFPELAQLPQLKVLDLSCNNL  464 (1081)
T ss_pred             chhh-hhhHHHHhhhhhHHHhhcCCcee-echhhhhcCcceEEecccchh
Confidence            7776 56677777777777777777665 333333444444444444433

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.96  E-value=4.7e-32  Score=304.99  Aligned_cols=350  Identities=26%  Similarity=0.346  Sum_probs=205.8

Q ss_pred             ccEEEcCCCcccccCCchhhccCCCCcEEEcccCcccccCCccCCCCCCCCEEEccCCcCCCCcchHhhhcCCcCcEEEc
Q 001439          539 LRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLAL  618 (1077)
Q Consensus       539 L~~L~l~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L  618 (1077)
                      .+.+++..|.+.+.++.++.. +..  .|+|.+|.+.   -..+..+++|+.|....|++. .+..    .-++|+.|+.
T Consensus       158 ik~~~l~~n~l~~~~~~~i~~-l~~--~ldLr~N~~~---~~dls~~~~l~~l~c~rn~ls-~l~~----~g~~l~~L~a  226 (1081)
T KOG0618|consen  158 IKKLDLRLNVLGGSFLIDIYN-LTH--QLDLRYNEME---VLDLSNLANLEVLHCERNQLS-ELEI----SGPSLTALYA  226 (1081)
T ss_pred             chhhhhhhhhcccchhcchhh-hhe--eeecccchhh---hhhhhhccchhhhhhhhcccc-eEEe----cCcchheeee
Confidence            555666666666666555543 222  4666666655   123455666666666666665 3221    2355666666


Q ss_pred             ccccCCCcccccccCCCccCeeeccCccccccCCccccCCCCCcEEEcccCcCCCCCCccccCCCCccEEECCCCcccCC
Q 001439          619 SNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGP  698 (1077)
Q Consensus       619 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~  698 (1077)
                      ++|.++...+.  ....+|++++++.|+++ .+|.+++.+.+|+.+++.+|+++ .+|..+...++|+.|.+..|.+. -
T Consensus       227 ~~n~l~~~~~~--p~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-y  301 (1081)
T KOG0618|consen  227 DHNPLTTLDVH--PVPLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-Y  301 (1081)
T ss_pred             ccCcceeeccc--cccccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-h
Confidence            66666532222  22345666666666666 34566666666666666666664 56666666666666666666665 3


Q ss_pred             CCccccCCCCCCEEeccCCcCCcCCCCCC--CCccccEEEccCCccccccCcccccccccccEeccccccCCCCCCcccc
Q 001439          699 IPLEFCQLRILQILDISDNNISGSLPSCY--DFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVD  776 (1077)
Q Consensus       699 ~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~--~~~~L~~L~l~~n~~~~~i~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~  776 (1077)
                      +|......+.|++|||..|++....+..+  -..+++.++.+.|++. ..|...=...+.|+.|.+.+|.+++..-..+.
T Consensus       302 ip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~-~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~  380 (1081)
T KOG0618|consen  302 IPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLS-TLPSYEENNHAALQELYLANNHLTDSCFPVLV  380 (1081)
T ss_pred             CCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhcccc-ccccccchhhHHHHHHHHhcCcccccchhhhc
Confidence            44455556666666666666653333222  1223555555555554 22221223445677777777777766666677


Q ss_pred             CCCCCCEEEccCccccccCchhccCCCCCCEEECcCCcCCCCCCcccccCcccccccCCCCCCCcccceeecCCCcCCcc
Q 001439          777 GLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPK  856 (1077)
Q Consensus       777 ~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  856 (1077)
                      +..+|+.|+|++|++.......+.++..|++|+||+|+++ .+|.+..++.                             
T Consensus       381 ~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~-----------------------------  430 (1081)
T KOG0618|consen  381 NFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLG-----------------------------  430 (1081)
T ss_pred             cccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhh-----------------------------
Confidence            7777777777777776443344666777777777777776 4455554443                             


Q ss_pred             cccccceeeccccceeecccCcCCCCceEECCCCcCCCCCcccccccccCceeeCcCCcCCC-CCCccccCCCCCCeEeC
Q 001439          857 KQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAG-PIPSTFSNLRNIESLDL  935 (1077)
Q Consensus       857 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~LdL  935 (1077)
                                              .|++|..-+|++. ..| ++..++.|+.+|+|.|+++. .+|.... -++|++|||
T Consensus       431 ------------------------~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p-~p~LkyLdl  483 (1081)
T KOG0618|consen  431 ------------------------RLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALP-SPNLKYLDL  483 (1081)
T ss_pred             ------------------------hhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCC-Ccccceeec
Confidence                                    4566666677766 456 67777777777777777764 3333322 267777777


Q ss_pred             CCCcCcccCCCcccCCCCcceEEcccc
Q 001439          936 SYNKLSWKIPYQLVELNTLAVFSVAYN  962 (1077)
Q Consensus       936 s~N~l~~~ip~~l~~l~~L~~l~ls~N  962 (1077)
                      ++|.-.-.--..|..+.++...++.-|
T Consensus       484 SGN~~l~~d~~~l~~l~~l~~~~i~~~  510 (1081)
T KOG0618|consen  484 SGNTRLVFDHKTLKVLKSLSQMDITLN  510 (1081)
T ss_pred             cCCcccccchhhhHHhhhhhheecccC
Confidence            777632233444555556666665555

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.91  E-value=1.3e-26  Score=237.16  Aligned_cols=147  Identities=22%  Similarity=0.249  Sum_probs=125.8

Q ss_pred             CCCcCCCccCcCCCCCccEEEcCCCcccccCCchhhccCCCCcEEEcccCcccccCCccCCCCCCCCEEEccC-CcCCCC
Q 001439          523 DSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSN-NQLTGE  601 (1077)
Q Consensus       523 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~-n~l~~~  601 (1077)
                      |+..|....|-.-.+....++|..|.|+ .||...|..+++|+.|+|++|.|+.+.|++|.++++|..|-+.+ |+|+ .
T Consensus        53 Cr~~GL~eVP~~LP~~tveirLdqN~I~-~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~  130 (498)
T KOG4237|consen   53 CRGKGLTEVPANLPPETVEIRLDQNQIS-SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-D  130 (498)
T ss_pred             ccCCCcccCcccCCCcceEEEeccCCcc-cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-h
Confidence            3334444555555677888999999998 89999998899999999999999999999999999988887776 8888 9


Q ss_pred             cchHhhhcCCcCcEEEcccccCCCcccccccCCCccCeeeccCccccccCCccccCCCCCcEEEcccCcC
Q 001439          602 IPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSL  671 (1077)
Q Consensus       602 ip~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l  671 (1077)
                      +|...|.++.+|+.|.+.-|++..+..+.|..+++|..|.+.+|.+..+-..+|..+.+++.+.+..|.+
T Consensus       131 l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~  200 (498)
T KOG4237|consen  131 LPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPF  200 (498)
T ss_pred             hhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCcc
Confidence            9999999999999999999999998889999999999999999998855555888999999999988873

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.90  E-value=1.3e-25  Score=229.92  Aligned_cols=283  Identities=20%  Similarity=0.217  Sum_probs=211.8

Q ss_pred             EEEcCCCcccccCCchhhccCCCCcEEEcccCcccccCCccCCCCCCCCEEEccCCcCCCCcchHhhhcCCcCcEEEccc
Q 001439          541 LLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSN  620 (1077)
Q Consensus       541 ~L~l~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~  620 (1077)
                      ..+-++-.++ ++|..+   .+.-.+++|..|+|+.+.|.+|+.+++|+.|||++|+|+ .|....|.++.+|..|-+.+
T Consensus        50 ~VdCr~~GL~-eVP~~L---P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is-~I~p~AF~GL~~l~~Lvlyg  124 (498)
T KOG4237|consen   50 IVDCRGKGLT-EVPANL---PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNIS-FIAPDAFKGLASLLSLVLYG  124 (498)
T ss_pred             eEEccCCCcc-cCcccC---CCcceEEEeccCCcccCChhhccchhhhceecccccchh-hcChHhhhhhHhhhHHHhhc
Confidence            4566666676 788876   467889999999999888899999999999999999998 89999999999998887766


Q ss_pred             -ccCCCcccccccCCCccCeeeccCccccccCCccccCCCCCcEEEcccCcCCCCCCccccCCCCccEEECCCCccc---
Q 001439          621 -NNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIE---  696 (1077)
Q Consensus       621 -n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~---  696 (1077)
                       |+|+......|.++.+|+.|.+.-|++.....+.|..+++|..|.+.+|.+....-..|..+.+++.+++..|.+.   
T Consensus       125 ~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdC  204 (498)
T KOG4237|consen  125 NNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDC  204 (498)
T ss_pred             CCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCcccccc
Confidence             9999999999999999999999999999888899999999999999999998443448999999999999988742   


Q ss_pred             ---------CCCCccccCCCCCCEEeccCCcCCcCCCCCCCCc--cccEEEccCCccccccCcccccccccccEeccccc
Q 001439          697 ---------GPIPLEFCQLRILQILDISDNNISGSLPSCYDFV--CIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYN  765 (1077)
Q Consensus       697 ---------~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~--~L~~L~l~~n~~~~~i~~~~~~~~~~L~~L~l~~n  765 (1077)
                               ...|..++...-..-..+.++++...-+..+.+.  ++..-..+.+...+..|...|..+++|+.|+|++|
T Consensus       205 nL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN  284 (498)
T KOG4237|consen  205 NLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNN  284 (498)
T ss_pred             ccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCC
Confidence                     2223333333333333344444433333333221  22111223333444556667777778888888888


Q ss_pred             cCCCCCCccccCCCCCCEEEccCccccccCchhccCCCCCCEEECcCCcCCCCCCcccccCcc
Q 001439          766 HLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTL  828 (1077)
Q Consensus       766 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~  828 (1077)
                      +++++-+.+|.++..++.|.|..|++...-...|.++..|+.|+|.+|+|+...|..|....+
T Consensus       285 ~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~  347 (498)
T KOG4237|consen  285 KITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFS  347 (498)
T ss_pred             ccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccce
Confidence            888777777877778888888888777666666777777888888888877777777765543

>PLN03210 Resistant to P

Probab=99.89  E-value=4.7e-22  Score=254.24  Aligned_cols=308  Identities=21%  Similarity=0.243  Sum_probs=179.3

Q ss_pred             CCcEEEcccCcccccCCccCCCCCCCCEEEccCCcCCCCcchHhhhcCCcCcEEEcccccCCCcccccccCCCccCeeec
Q 001439          563 RLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQL  642 (1077)
Q Consensus       563 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  642 (1077)
                      +|+.|.+.++.+. .+|..| ...+|++|++++|++. .++... ..+++|+.|+++++.....+|. +..+++|+.|++
T Consensus       590 ~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~~~-~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L  664 (1153)
T PLN03210        590 KLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWDGV-HSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKL  664 (1153)
T ss_pred             ccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-cccccc-ccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEe
Confidence            3444444444443 334333 2344555555554444 343332 2344455555544433222322 334455555555


Q ss_pred             cCccccccCCccccCCCCCcEEEcccCcCCCCCCccccCCCCccEEECCCCcccCCCCccccCCCCCCEEeccCCcCCcC
Q 001439          643 EGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGS  722 (1077)
Q Consensus       643 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~  722 (1077)
                      ++|.....+|..+..+++|+.|++++|...+.+|..+ ++++|+.|++++|...+.+|..   .++|+.|++++|.+. .
T Consensus       665 ~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~  739 (1153)
T PLN03210        665 SDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-E  739 (1153)
T ss_pred             cCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-c
Confidence            5554444455555555555555555544333444433 4555555555555443333321   234555555555543 3


Q ss_pred             CCCCCCCccccEEEccCCccc---c---ccCcccccccccccEeccccccCCCCCCccccCCCCCCEEEccCccccccCc
Q 001439          723 LPSCYDFVCIEQVHLSKNMLH---G---QLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVP  796 (1077)
Q Consensus       723 ~p~~~~~~~L~~L~l~~n~~~---~---~i~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p  796 (1077)
                      +|....+++|++|.+.++...   +   .++...+..+++|+.|++++|...+.+|..++++++|+.|++++|...+.+|
T Consensus       740 lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP  819 (1153)
T PLN03210        740 FPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLP  819 (1153)
T ss_pred             ccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeC
Confidence            444444555555555442211   0   1111123345678888888888777888888888888888888886655777


Q ss_pred             hhccCCCCCCEEECcCCcCCCCCCcccccCcccccccCCCCCCCcccceeecCCCcCCcccccccceeeccccceeeccc
Q 001439          797 IQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQG  876 (1077)
Q Consensus       797 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  876 (1077)
                      ..+ .+++|+.|++++|.....+|..                                                      
T Consensus       820 ~~~-~L~sL~~L~Ls~c~~L~~~p~~------------------------------------------------------  844 (1153)
T PLN03210        820 TGI-NLESLESLDLSGCSRLRTFPDI------------------------------------------------------  844 (1153)
T ss_pred             CCC-CccccCEEECCCCCcccccccc------------------------------------------------------
Confidence            665 6888888888887644333321                                                      


Q ss_pred             CcCCCCceEECCCCcCCCCCcccccccccCceeeCcC-CcCCCCCCccccCCCCCCeEeCCCCc
Q 001439          877 RVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSH-NNLAGPIPSTFSNLRNIESLDLSYNK  939 (1077)
Q Consensus       877 ~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~LdLs~N~  939 (1077)
                        +.+++.|+|++|.++ .+|..+..+++|+.|+|++ |++. .+|..+..+++|+.++++++.
T Consensus       845 --~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~-~l~~~~~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        845 --STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQ-RVSLNISKLKHLETVDFSDCG  904 (1153)
T ss_pred             --ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcC-ccCcccccccCCCeeecCCCc
Confidence              226778899999887 5788888899999999988 4555 577778888899999988874

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=99.89  E-value=1.2e-21  Score=250.55  Aligned_cols=341  Identities=22%  Similarity=0.262  Sum_probs=274.7

Q ss_pred             CCchhhccCCCCcEEEcccCc------ccccCCccCCCCC-CCCEEEccCCcCCCCcchHhhhcCCcCcEEEcccccCCC
Q 001439          553 IPLEIGDILSRLTVFNISMNA------LDGSIPSSFGNMN-FLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEG  625 (1077)
Q Consensus       553 i~~~~~~~l~~L~~L~L~~n~------l~~~~p~~~~~l~-~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~  625 (1077)
                      +....|..+++|+.|.+..+.      +...+|..|..++ +|+.|.+.++.+. .+|..+  ...+|+.|++.+|++..
T Consensus       549 i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f--~~~~L~~L~L~~s~l~~  625 (1153)
T PLN03210        549 IHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF--RPENLVKLQMQGSKLEK  625 (1153)
T ss_pred             ecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC--CccCCcEEECcCccccc
Confidence            444556669999999997653      2334677777764 6999999999997 888876  47899999999999875


Q ss_pred             cccccccCCCccCeeeccCccccccCCccccCCCCCcEEEcccCcCCCCCCccccCCCCccEEECCCCcccCCCCccccC
Q 001439          626 HMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQ  705 (1077)
Q Consensus       626 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~  705 (1077)
                       .+..+..+++|+.|+++++...+.+|. +..+++|+.|++++|.....+|..++++++|+.|++++|...+.+|..+ +
T Consensus       626 -L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~  702 (1153)
T PLN03210        626 -LWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-N  702 (1153)
T ss_pred             -cccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-C
Confidence             556678899999999999876666764 7889999999999998777899999999999999999987666778765 7


Q ss_pred             CCCCCEEeccCCcCCcCCCCCCCCccccEEEccCCccccccCcccccccccccEeccccccCC-------CCCCccccCC
Q 001439          706 LRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLN-------GNIPDRVDGL  778 (1077)
Q Consensus       706 l~~L~~L~Ls~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~i~~~~~~~~~~L~~L~l~~n~l~-------~~~p~~~~~l  778 (1077)
                      +++|+.|++++|...+.+|..  ..+|++|++++|.+. .+|. .+ .+++|+.|++.++...       ...|......
T Consensus       703 l~sL~~L~Lsgc~~L~~~p~~--~~nL~~L~L~~n~i~-~lP~-~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~  777 (1153)
T PLN03210        703 LKSLYRLNLSGCSRLKSFPDI--STNISWLDLDETAIE-EFPS-NL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLS  777 (1153)
T ss_pred             CCCCCEEeCCCCCCccccccc--cCCcCeeecCCCccc-cccc-cc-cccccccccccccchhhccccccccchhhhhcc
Confidence            899999999999877777654  468999999999875 5675 33 5788898988875422       1222233345


Q ss_pred             CCCCEEEccCccccccCchhccCCCCCCEEECcCCcCCCCCCcccccCcccccccCCCCCCCcccceeecCCCcCCcccc
Q 001439          779 SQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQ  858 (1077)
Q Consensus       779 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  858 (1077)
                      ++|+.|++++|...+.+|.+++++++|+.|++++|+..+.+|... +                                 
T Consensus       778 ~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~---------------------------------  823 (1153)
T PLN03210        778 PSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-N---------------------------------  823 (1153)
T ss_pred             ccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-C---------------------------------
Confidence            789999999999888999999999999999999987655666533 1                                 


Q ss_pred             cccceeeccccceeecccCcCCCCceEECCCCcCCCCCcccccccccCceeeCcCCcCCCCCCccccCCCCCCeEeCCC-
Q 001439          859 ILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSY-  937 (1077)
Q Consensus       859 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~-  937 (1077)
                                          ++.|+.|+|++|.....+|..   .++|+.|+|++|.++ .+|.++..+++|+.|++++ 
T Consensus       824 --------------------L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C  879 (1153)
T PLN03210        824 --------------------LESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGC  879 (1153)
T ss_pred             --------------------ccccCEEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCC
Confidence                                126889999998776667654   368999999999998 6899999999999999999 


Q ss_pred             CcCcccCCCcccCCCCcceEEccccc
Q 001439          938 NKLSWKIPYQLVELNTLAVFSVAYNN  963 (1077)
Q Consensus       938 N~l~~~ip~~l~~l~~L~~l~ls~N~  963 (1077)
                      |++. .+|..+..++.|+.++++++.
T Consensus       880 ~~L~-~l~~~~~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        880 NNLQ-RVSLNISKLKHLETVDFSDCG  904 (1153)
T ss_pred             CCcC-ccCcccccccCCCeeecCCCc
Confidence            5565 688889999999999999884

syringae 6; Provisional

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.86  E-value=4e-21  Score=226.22  Aligned_cols=74  Identities=24%  Similarity=0.323  Sum_probs=39.2

Q ss_pred             CCcEEEcccCcccccCCccCCCCCCCCEEEccCCcCCCCcchHhhhcCCcCcEEEcccccCCCcccccccCCCccCeeec
Q 001439          563 RLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQL  642 (1077)
Q Consensus       563 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  642 (1077)
                      .-..|+++.+.++ .+|..+.  ++|+.|++++|+++ .+|.    .+++|++|++++|+++.. |.   ..++|+.|++
T Consensus       202 ~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~----lp~~Lk~LdLs~N~LtsL-P~---lp~sL~~L~L  269 (788)
T PRK15387        202 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTSL-PV---LPPGLLELSI  269 (788)
T ss_pred             CCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCC----CCCCCcEEEecCCccCcc-cC---cccccceeec
Confidence            4556677777666 4555553  35667777777666 5553    134555555555555532 21   1234444444


Q ss_pred             cCcccc
Q 001439          643 EGNHFV  648 (1077)
Q Consensus       643 ~~n~l~  648 (1077)
                      ++|.+.
T Consensus       270 s~N~L~  275 (788)
T PRK15387        270 FSNPLT  275 (788)
T ss_pred             cCCchh
Confidence            444444

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.84  E-value=2.3e-20  Score=219.77  Aligned_cols=134  Identities=25%  Similarity=0.315  Sum_probs=81.8

Q ss_pred             CccEEEcCCCcccccCCchhhccCCCCcEEEcccCcccccCCccCCCCCCCCEEEccCCcCCCCcchHhhhcCCcCcEEE
Q 001439          538 QLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLA  617 (1077)
Q Consensus       538 ~L~~L~l~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~  617 (1077)
                      .-..|+++.+.++ .+|..+.   ++|+.|++.+|+++. +|..   .++|++|++++|+++ .+|..    .++|+.|+
T Consensus       202 ~~~~LdLs~~~Lt-sLP~~l~---~~L~~L~L~~N~Lt~-LP~l---p~~Lk~LdLs~N~Lt-sLP~l----p~sL~~L~  268 (788)
T PRK15387        202 GNAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTS-LPAL---PPELRTLEVSGNQLT-SLPVL----PPGLLELS  268 (788)
T ss_pred             CCcEEEcCCCCCC-cCCcchh---cCCCEEEccCCcCCC-CCCC---CCCCcEEEecCCccC-cccCc----ccccceee
Confidence            3557788888877 6777653   467888888888773 4532   467888888888887 66642    46778888


Q ss_pred             cccccCCCcccccccCCCccCeeeccCccccccCCccccCCCCCcEEEcccCcCCCCCCccccCCCCccEEECCCCccc
Q 001439          618 LSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIE  696 (1077)
Q Consensus       618 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~  696 (1077)
                      +++|.++... .   ..++|+.|++++|+++. +|..   .++|+.|++++|++++ +|...   .+|+.|++++|+++
T Consensus       269 Ls~N~L~~Lp-~---lp~~L~~L~Ls~N~Lt~-LP~~---p~~L~~LdLS~N~L~~-Lp~lp---~~L~~L~Ls~N~L~  335 (788)
T PRK15387        269 IFSNPLTHLP-A---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS-LPALP---SELCKLWAYNNQLT  335 (788)
T ss_pred             ccCCchhhhh-h---chhhcCEEECcCCcccc-cccc---ccccceeECCCCcccc-CCCCc---ccccccccccCccc
Confidence            8888776432 2   12456666777776663 3331   3456666666666653 33211   23444455555444

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.77  E-value=1.2e-18  Score=207.18  Aligned_cols=119  Identities=28%  Similarity=0.369  Sum_probs=65.2

Q ss_pred             CCCcEEEcccCcccccCCccCCCCCCCCEEEccCCcCCCCcchHhhhcCCcCcEEEcccccCCCcccccccCCCccCeee
Q 001439          562 SRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQ  641 (1077)
Q Consensus       562 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  641 (1077)
                      .+...|+++++.++ .+|..+.  +.|+.|++++|+++ .+|...+   .+|++|++++|+++.. |..+  ..+|+.|+
T Consensus       178 ~~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~---~nL~~L~Ls~N~LtsL-P~~l--~~~L~~L~  247 (754)
T PRK15370        178 NNKTELRLKILGLT-TIPACIP--EQITTLILDNNELK-SLPENLQ---GNIKTLYANSNQLTSI-PATL--PDTIQEME  247 (754)
T ss_pred             cCceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCC-cCChhhc---cCCCEEECCCCccccC-Chhh--hccccEEE
Confidence            35667788777777 4555442  46778888888777 6776553   4677777777766643 3222  12455555


Q ss_pred             ccCccccccCCccccCCCCCcEEEcccCcCCCCCCccccCCCCccEEECCCCccc
Q 001439          642 LEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIE  696 (1077)
Q Consensus       642 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~  696 (1077)
                      +++|.+. .+|..+.  ++|+.|++++|+++ .+|..+.  ++|+.|++++|+++
T Consensus       248 Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt  296 (754)
T PRK15370        248 LSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIR  296 (754)
T ss_pred             CcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCccc
Confidence            5555555 3343332  34555555555554 3343322  23444444444443

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.76  E-value=1.4e-18  Score=206.72  Aligned_cols=222  Identities=26%  Similarity=0.389  Sum_probs=123.6

Q ss_pred             ccEEEcCCCcccccCCchhhccCCCCcEEEcccCcccccCCccCCCCCCCCEEEccCCcCCCCcchHhhhcCCcCcEEEc
Q 001439          539 LRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLAL  618 (1077)
Q Consensus       539 L~~L~l~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L  618 (1077)
                      .+.|+++++.++ .+|..+   .+.++.|++++|+++ .+|..+.  ++|++|++++|+++ .+|..+.   .+|+.|++
T Consensus       180 ~~~L~L~~~~Lt-sLP~~I---p~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~---~~L~~L~L  248 (754)
T PRK15370        180 KTELRLKILGLT-TIPACI---PEQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP---DTIQEMEL  248 (754)
T ss_pred             ceEEEeCCCCcC-cCCccc---ccCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh---ccccEEEC
Confidence            445666666655 455543   245666666666666 3444332  36677777777666 5665442   35677777


Q ss_pred             ccccCCCcccccccCCCccCeeeccCccccccCCccccCCCCCcEEEcccCcCCCCCCccccCCCCccEEECCCCcccCC
Q 001439          619 SNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGP  698 (1077)
Q Consensus       619 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~  698 (1077)
                      ++|++.. +|..+.  .+|+.|++++|+++ .+|..+.  ++|+.|++++|+++ .+|..+.  ++|+.|++++|+++. 
T Consensus       249 s~N~L~~-LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp--~sL~~L~Ls~N~Lt~-  318 (754)
T PRK15370        249 SINRITE-LPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIR-TLPAHLP--SGITHLNVQSNSLTA-  318 (754)
T ss_pred             cCCccCc-CChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCccc-cCcccch--hhHHHHHhcCCcccc-
Confidence            7776663 333332  46777777777777 3555443  47888888888777 3454332  356667777776663 


Q ss_pred             CCccccCCCCCCEEeccCCcCCcCCCCCCCCccccEEEccCCccccccCcccccccccccEeccccccCCCCCCccccCC
Q 001439          699 IPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGL  778 (1077)
Q Consensus       699 ~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~i~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l  778 (1077)
                      +|..+.  ++|+.|++++|.+++ +|                       . .+  +++|+.|++++|+++ .+|..+.  
T Consensus       319 LP~~l~--~sL~~L~Ls~N~Lt~-LP-----------------------~-~l--~~sL~~L~Ls~N~L~-~LP~~lp--  366 (754)
T PRK15370        319 LPETLP--PGLKTLEAGENALTS-LP-----------------------A-SL--PPELQVLDVSKNQIT-VLPETLP--  366 (754)
T ss_pred             CCcccc--ccceeccccCCcccc-CC-----------------------h-hh--cCcccEEECCCCCCC-cCChhhc--
Confidence            333221  456666666665542 22                       1 11  134555555555554 3444332  


Q ss_pred             CCCCEEEccCccccccCchhccCCCCCCEEECcCCcCC
Q 001439          779 SQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLH  816 (1077)
Q Consensus       779 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~  816 (1077)
                      ++|+.|++++|+++ .+|..+.  ..|+.|++++|+++
T Consensus       367 ~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~  401 (754)
T PRK15370        367 PTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLV  401 (754)
T ss_pred             CCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcc
Confidence            45566666666655 3344332  24555666666655

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.67  E-value=2.5e-18  Score=191.77  Aligned_cols=67  Identities=27%  Similarity=0.377  Sum_probs=36.2

Q ss_pred             ccccccccEeccccccCCCC----CCccccCCCCCCEEEccCcccccc----CchhccCCCCCCEEECcCCcCCC
Q 001439          751 FFNCLTLMILDLSYNHLNGN----IPDRVDGLSQLSYLILAHNNLEGE----VPIQLCRLNQLQLLDLSNNNLHG  817 (1077)
Q Consensus       751 ~~~~~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~  817 (1077)
                      +..+++|+.|++++|.+++.    ++..+..+++|+.|++++|.+.+.    ++..+..+++|++|++++|++++
T Consensus       161 ~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~  235 (319)
T cd00116         161 LRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTD  235 (319)
T ss_pred             HHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCch
Confidence            44445566666666665531    222333445666666666666532    22334456666666666666553

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.66  E-value=3.8e-18  Score=190.37  Aligned_cols=108  Identities=21%  Similarity=0.290  Sum_probs=52.7

Q ss_pred             CCceEECCCCcCCCC----CcccccccccCceeeCcCCcCCCCCCcccc-----CCCCCCeEeCCCCcCc----ccCCCc
Q 001439          881 LLSGLDLSCNRLIGH----IPPQIGNLTKIQTLNLSHNNLAGPIPSTFS-----NLRNIESLDLSYNKLS----WKIPYQ  947 (1077)
Q Consensus       881 ~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~-----~l~~L~~LdLs~N~l~----~~ip~~  947 (1077)
                      .|+.|+|++|.+++.    ++..+..+++|++|++++|.+++.....+.     ..+.|+.|++++|.++    ..++..
T Consensus       194 ~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~  273 (319)
T cd00116         194 NLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEV  273 (319)
T ss_pred             CCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHH
Confidence            344455555554422    222344455666666666666542222221     1256666666666665    123334


Q ss_pred             ccCCCCcceEEccccccccc----CCcccccc-CCCCcccccCCCC
Q 001439          948 LVELNTLAVFSVAYNNLSGK----IPERAAQF-ATFNESSYEGNPF  988 (1077)
Q Consensus       948 l~~l~~L~~l~ls~N~l~g~----~p~~~~~~-~~~~~~~~~gN~~  988 (1077)
                      +..++.|+++++++|+++..    +......+ ..+..+++.+||+
T Consensus       274 ~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (319)
T cd00116         274 LAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF  319 (319)
T ss_pred             HhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence            44456666666666666632    22112223 3445555555553

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.63  E-value=7.2e-18  Score=153.13  Aligned_cols=87  Identities=29%  Similarity=0.429  Sum_probs=46.3

Q ss_pred             CceEECCCCcCCC-CCcccccccccCceeeCcCCcCCCCCCccccCCCCCCeEeCCCCcCcccCCCcccCCCCcceEEcc
Q 001439          882 LSGLDLSCNRLIG-HIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVA  960 (1077)
Q Consensus       882 L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~l~ls  960 (1077)
                      |+.|||++|++.. ..|..|..++.|+.|+|+.|.|. .+|..++++++|+.|.+..|.+- ..|..++.++.|+.|.+.
T Consensus       104 levldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiq  181 (264)
T KOG0617|consen  104 LEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQ  181 (264)
T ss_pred             hhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcc
Confidence            3344444444432 34555555555555555555555 44555555555555555555555 455555555555555555


Q ss_pred             cccccccCCc
Q 001439          961 YNNLSGKIPE  970 (1077)
Q Consensus       961 ~N~l~g~~p~  970 (1077)
                      +|+++-..|+
T Consensus       182 gnrl~vlppe  191 (264)
T KOG0617|consen  182 GNRLTVLPPE  191 (264)
T ss_pred             cceeeecChh
Confidence            5555544444

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.63  E-value=6.4e-18  Score=153.42  Aligned_cols=187  Identities=29%  Similarity=0.486  Sum_probs=149.5

Q ss_pred             CCCCCCccccEEEccCCccccccCcccccccccccEeccccccCCCCCCccccCCCCCCEEEccCccccccCchhccCCC
Q 001439          724 PSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLN  803 (1077)
Q Consensus       724 p~~~~~~~L~~L~l~~n~~~~~i~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~  803 (1077)
                      |..|+....+.|.+++|+++ .+|+ .++.+.+|+.|++.+|+++ .+|..++.+++|+.|+++-|++. ..|..|+.++
T Consensus        27 ~gLf~~s~ITrLtLSHNKl~-~vpp-nia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p  102 (264)
T KOG0617|consen   27 PGLFNMSNITRLTLSHNKLT-VVPP-NIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFP  102 (264)
T ss_pred             ccccchhhhhhhhcccCcee-ecCC-cHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCc
Confidence            33344445555555555554 4555 6888999999999999998 78999999999999999999998 8899999999


Q ss_pred             CCCEEECcCCcCCCC-CCcccccCcccccccCCCCCCCcccceeecCCCcCCcccccccceeeccccceeecccCcCCCC
Q 001439          804 QLQLLDLSNNNLHGH-IPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLL  882 (1077)
Q Consensus       804 ~L~~L~Ls~N~l~~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L  882 (1077)
                      .|+.|||.+|++... .|.-|--++                                                     .|
T Consensus       103 ~levldltynnl~e~~lpgnff~m~-----------------------------------------------------tl  129 (264)
T KOG0617|consen  103 ALEVLDLTYNNLNENSLPGNFFYMT-----------------------------------------------------TL  129 (264)
T ss_pred             hhhhhhccccccccccCCcchhHHH-----------------------------------------------------HH
Confidence            999999999998742 344332222                                                     56


Q ss_pred             ceEECCCCcCCCCCcccccccccCceeeCcCCcCCCCCCccccCCCCCCeEeCCCCcCcccCCCcccCCCCc---ceEEc
Q 001439          883 SGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTL---AVFSV  959 (1077)
Q Consensus       883 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L---~~l~l  959 (1077)
                      +.|+|+.|.|. .+|..++++++||.|.+..|.+- ..|..++.++.|+.|.+.+|+++ .+|..++++.-+   +.+.+
T Consensus       130 ralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~l~l~~~k~v~r~  206 (264)
T KOG0617|consen  130 RALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELANLDLVGNKQVMRM  206 (264)
T ss_pred             HHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-ecChhhhhhhhhhhHHHHhh
Confidence            78999999998 78999999999999999999998 78999999999999999999999 788887765432   34555


Q ss_pred             ccccccccCCc
Q 001439          960 AYNNLSGKIPE  970 (1077)
Q Consensus       960 s~N~l~g~~p~  970 (1077)
                      .+|++..+|.+
T Consensus       207 E~NPwv~pIae  217 (264)
T KOG0617|consen  207 EENPWVNPIAE  217 (264)
T ss_pred             hhCCCCChHHH
Confidence            66666655543

>PLN03150 hypothetical protein; Provisional

Probab=99.58  E-value=3.9e-15  Score=177.52  Aligned_cols=119  Identities=33%  Similarity=0.547  Sum_probs=107.3

Q ss_pred             CCceEECCCCcCCCCCcccccccccCceeeCcCCcCCCCCCccccCCCCCCeEeCCCCcCcccCCCcccCCCCcceEEcc
Q 001439          881 LLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVA  960 (1077)
Q Consensus       881 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~l~ls  960 (1077)
                      .++.|+|++|.++|.+|..++.+++|+.|+|++|.++|.+|..++.+++|+.|||++|+++|.+|..++++++|+.|+++
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            36789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccccCCcccccc-CCCCcccccCCCCCCCCCCCCCCC
Q 001439          961 YNNLSGKIPERAAQF-ATFNESSYEGNPFLCGPPLPICIS  999 (1077)
Q Consensus       961 ~N~l~g~~p~~~~~~-~~~~~~~~~gN~~lC~~~l~~~c~  999 (1077)
                      +|+++|.+|..+... .....+++.+|+.+|+.|....|.
T Consensus       499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~  538 (623)
T PLN03150        499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG  538 (623)
T ss_pred             CCcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence            999999999865542 345567899999999976544453

>PLN03150 hypothetical protein; Provisional

Probab=99.41  E-value=1.2e-12  Score=156.45  Aligned_cols=156  Identities=29%  Similarity=0.458  Sum_probs=105.4

Q ss_pred             cccCcHHHHHHHHhchhhccCCCCcccCCCCCCCCCCCc----cccceEecCCCCceEEEEcCCcccCcccccccccccc
Q 001439           24 SEGCLNHERFALLQLKLFFIDPYNYLLDWVDDEGATDCC----QWERVSCNNTMGRVVVLDLSQTHRGEYWYLNASLFTP   99 (1077)
Q Consensus        24 ~~~c~~~~~~all~~k~~~~~~~~~l~~w~~~~~~~~~c----~w~gv~c~~~~~~v~~l~L~~~~~~~~~~~~~~~~~~   99 (1077)
                      ...+.++|.+||+++|+++.+|..  .+|.+    ..||    .|.||.|......                       .
T Consensus       366 ~~~t~~~~~~aL~~~k~~~~~~~~--~~W~g----~~C~p~~~~w~Gv~C~~~~~~-----------------------~  416 (623)
T PLN03150        366 ESKTLLEEVSALQTLKSSLGLPLR--FGWNG----DPCVPQQHPWSGADCQFDSTK-----------------------G  416 (623)
T ss_pred             ccccCchHHHHHHHHHHhcCCccc--CCCCC----CCCCCcccccccceeeccCCC-----------------------C
Confidence            445677899999999999876542  48964    4453    7999999631100                       0


Q ss_pred             CcCCcEeeCCCCCCCccccchhhhhccCCCCCcEEeCCCCCCCchhhHHhhccCCCCEEeCCCCcCCCccCCcchhhccC
Q 001439          100 FQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILSSLARLSSLTSLDLSANRLKGSIDIKGPKRLSR  179 (1077)
Q Consensus       100 l~~L~~L~Ls~n~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~  179 (1077)
                      ...++.|+|++|.+.|..+.    .++.+++|++|+|++|.+.+.+|..++++++|++|+|++|.+.|.+|    ..+++
T Consensus       417 ~~~v~~L~L~~n~L~g~ip~----~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP----~~l~~  488 (623)
T PLN03150        417 KWFIDGLGLDNQGLRGFIPN----DISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIP----ESLGQ  488 (623)
T ss_pred             ceEEEEEECCCCCccccCCH----HHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCc----hHHhc
Confidence            01133444455555555443    36777777888888777777777777778888888888887777666    57777


Q ss_pred             CCCCcEEECCCCCCCchhhHhhhcc-CCCcEEEcCCCC
Q 001439          180 LNNLKVFDLSGNLFNNSILSSLARL-SSLRSLLLYDNR  216 (1077)
Q Consensus       180 l~~L~~L~Ls~n~i~~~~~~~l~~l-~~L~~L~L~~n~  216 (1077)
                      +++|++|+|++|.+++.+|..++.+ .++..+++.+|.
T Consensus       489 L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~  526 (623)
T PLN03150        489 LTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNA  526 (623)
T ss_pred             CCCCCEEECcCCcccccCChHHhhccccCceEEecCCc
Confidence            7778888888777777777776653 355566666554

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.28  E-value=1.7e-12  Score=132.98  Aligned_cols=97  Identities=23%  Similarity=0.203  Sum_probs=56.2

Q ss_pred             ccCcCCcEeeCCCCCCCccccchhhhhccCCCCCcEEeCCCC---CCCchhhHHh-------hccCCCCEEeCCCCcCCC
Q 001439           98 TPFQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGN---LFNNSILSSL-------ARLSSLTSLDLSANRLKG  167 (1077)
Q Consensus        98 ~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~l~~L~~L~Ls~n---~l~~~~~~~l-------~~l~~L~~L~Ls~n~l~~  167 (1077)
                      ..+..+++++||+|.|.........+.+.+.+.||..++|.-   +...++|+.+       ..+++|++||||+|.+..
T Consensus        27 ~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~  106 (382)
T KOG1909|consen   27 EPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGP  106 (382)
T ss_pred             cccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCc
Confidence            455677777777777765555555566777778888877764   2233455544       234566666666666543


Q ss_pred             ccCCcchhhccCCCCCcEEECCCCCCC
Q 001439          168 SIDIKGPKRLSRLNNLKVFDLSGNLFN  194 (1077)
Q Consensus       168 ~~~~~~~~~l~~l~~L~~L~Ls~n~i~  194 (1077)
                      ..+..+...+.+++.|++|.|.+|.+.
T Consensus       107 ~g~~~l~~ll~s~~~L~eL~L~N~Glg  133 (382)
T KOG1909|consen  107 KGIRGLEELLSSCTDLEELYLNNCGLG  133 (382)
T ss_pred             cchHHHHHHHHhccCHHHHhhhcCCCC
Confidence            333222333455555666666555543

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.22  E-value=7e-13  Score=143.46  Aligned_cols=170  Identities=32%  Similarity=0.508  Sum_probs=118.9

Q ss_pred             EEccCCccccccCcccccccccccEeccccccCCCCCCccccCCCCCCEEEccCccccccCchhccCCCCCCEEECcCCc
Q 001439          735 VHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNN  814 (1077)
Q Consensus       735 L~l~~n~~~~~i~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~  814 (1077)
                      .+++.|++. .+|. .+..+..|+.+.+..|.+. .+|..+.++..|.+|+|+.|++. ..|..++.|+ |+.|-+++|+
T Consensus        80 aDlsrNR~~-elp~-~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNk  154 (722)
T KOG0532|consen   80 ADLSRNRFS-ELPE-EACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNK  154 (722)
T ss_pred             hhccccccc-cCch-HHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecCc
Confidence            344444442 4555 5666667777777777776 67777777777777777777776 6666666665 6777777777


Q ss_pred             CCCCCCcccccCcccccccCCCCCCCcccceeecCCCcCCcccccccceeeccccceeecccCcCCCCceEECCCCcCCC
Q 001439          815 LHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIG  894 (1077)
Q Consensus       815 l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~  894 (1077)
                      ++ .+|..++..                                                     ..|..||.+.|++. 
T Consensus       155 l~-~lp~~ig~~-----------------------------------------------------~tl~~ld~s~nei~-  179 (722)
T KOG0532|consen  155 LT-SLPEEIGLL-----------------------------------------------------PTLAHLDVSKNEIQ-  179 (722)
T ss_pred             cc-cCCcccccc-----------------------------------------------------hhHHHhhhhhhhhh-
Confidence            76 334333311                                                     14566777888776 


Q ss_pred             CCcccccccccCceeeCcCCcCCCCCCccccCCCCCCeEeCCCCcCcccCCCcccCCCCcceEEccccccccc
Q 001439          895 HIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGK  967 (1077)
Q Consensus       895 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~l~ls~N~l~g~  967 (1077)
                      .+|..++++.+|+.|++..|++. ..|..+..|+ |..||+|.|+++ .||-+|.+|+.|++|-|.+|+|..+
T Consensus       180 slpsql~~l~slr~l~vrRn~l~-~lp~El~~Lp-Li~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLqSP  249 (722)
T KOG0532|consen  180 SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSLP-LIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQSP  249 (722)
T ss_pred             hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCCc-eeeeecccCcee-ecchhhhhhhhheeeeeccCCCCCC
Confidence            57778888888888888888887 5566666654 778888888888 7888888888888888888888743

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.20  E-value=4.1e-13  Score=145.25  Aligned_cols=175  Identities=29%  Similarity=0.513  Sum_probs=153.8

Q ss_pred             ccccccEeccccccCCCCCCccccCCCCCCEEEccCccccccCchhccCCCCCCEEECcCCcCCCCCCcccccCcccccc
Q 001439          753 NCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERY  832 (1077)
Q Consensus       753 ~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~  832 (1077)
                      .+..-...|++.|++. .+|..+..+..|+.+.|..|.+. .+|..++++..|.+|||+.|+++ ..|..+..+.     
T Consensus        73 ~ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-----  144 (722)
T KOG0532|consen   73 DLTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-----  144 (722)
T ss_pred             cccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-----
Confidence            3455578899999998 88999988999999999999998 89999999999999999999998 4454444332     


Q ss_pred             cCCCCCCCcccceeecCCCcCCcccccccceeeccccceeecccCcCCCCceEECCCCcCCCCCcccccccccCceeeCc
Q 001439          833 NNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLS  912 (1077)
Q Consensus       833 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls  912 (1077)
                                                                       |+.|-+++|+++ .+|+.++.+..|..||.|
T Consensus       145 -------------------------------------------------Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s  174 (722)
T KOG0532|consen  145 -------------------------------------------------LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVS  174 (722)
T ss_pred             -------------------------------------------------ceeEEEecCccc-cCCcccccchhHHHhhhh
Confidence                                                             677899999998 789999999999999999


Q ss_pred             CCcCCCCCCccccCCCCCCeEeCCCCcCcccCCCcccCCCCcceEEcccccccccCCccccccCCCCcccccCCCCC
Q 001439          913 HNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQFATFNESSYEGNPFL  989 (1077)
Q Consensus       913 ~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~l~ls~N~l~g~~p~~~~~~~~~~~~~~~gN~~l  989 (1077)
                      .|++. .+|..++.+++|+.|.++.|++. ..|..+..|+ |..||+|+|+++ .||..+..+..+..+-++.||..
T Consensus       175 ~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~Lp-Li~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq  247 (722)
T KOG0532|consen  175 KNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSLP-LIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ  247 (722)
T ss_pred             hhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCCc-eeeeecccCcee-ecchhhhhhhhheeeeeccCCCC
Confidence            99999 77888999999999999999999 6788888665 899999999998 57877899999999999999965

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.13  E-value=7.9e-11  Score=135.13  Aligned_cols=155  Identities=37%  Similarity=0.560  Sum_probs=87.5

Q ss_pred             cccEeccccccCCCCCCccccCCCCCCEEEccCccccccCchhccCCCCCCEEECcCCcCCCCCCcccccCcccccccCC
Q 001439          756 TLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNG  835 (1077)
Q Consensus       756 ~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~  835 (1077)
                      +|+.|++++|.+. .+|..++.+++|+.|++++|++. .+|...+.++.|+.|++++|+++. +|....           
T Consensus       141 nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~~-l~~~~~-----------  206 (394)
T COG4886         141 NLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKISD-LPPEIE-----------  206 (394)
T ss_pred             hcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhheeccCCcccc-Cchhhh-----------
Confidence            5666666666655 34445556666666666666665 444444455666666666666552 221100           


Q ss_pred             CCCCCcccceeecCCCcCCcccccccceeeccccceeecccCcCCCCceEECCCCcCCCCCcccccccccCceeeCcCCc
Q 001439          836 SSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNN  915 (1077)
Q Consensus       836 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~  915 (1077)
                                                                .+..|+++++++|.+. .++..+.++..+..|.+++|+
T Consensus       207 ------------------------------------------~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~  243 (394)
T COG4886         207 ------------------------------------------LLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNK  243 (394)
T ss_pred             ------------------------------------------hhhhhhhhhhcCCcce-ecchhhhhcccccccccCCce
Confidence                                                      1113555666666432 345556666666666666666


Q ss_pred             CCCCCCccccCCCCCCeEeCCCCcCcccCCCcccCCCCcceEEcccccccccCCc
Q 001439          916 LAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPE  970 (1077)
Q Consensus       916 l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~l~ls~N~l~g~~p~  970 (1077)
                      +. .++..++.+++++.|++++|+++ .++. ++.+..++.+++++|.++...|.
T Consensus       244 ~~-~~~~~~~~l~~l~~L~~s~n~i~-~i~~-~~~~~~l~~L~~s~n~~~~~~~~  295 (394)
T COG4886         244 LE-DLPESIGNLSNLETLDLSNNQIS-SISS-LGSLTNLRELDLSGNSLSNALPL  295 (394)
T ss_pred             ee-eccchhccccccceecccccccc-cccc-ccccCccCEEeccCccccccchh
Confidence            65 22555666666666666666666 3333 66666666666666666655444

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.06  E-value=7.6e-11  Score=124.24  Aligned_cols=190  Identities=29%  Similarity=0.355  Sum_probs=130.1

Q ss_pred             ccCcCCcEeeCCCCCCCccccchhhhhccCCCCCcEEeCCCCCCCc--hhhHHhhccCCCCEEeCCCCcCCCccCCcchh
Q 001439           98 TPFQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNN--SILSSLARLSSLTSLDLSANRLKGSIDIKGPK  175 (1077)
Q Consensus        98 ~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~--~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~  175 (1077)
                      +++++||.+.|.+++.......   +....|++++.||||+|-+..  .+..-...|++|+.|+|+.|.+.-....   .
T Consensus       118 sn~kkL~~IsLdn~~V~~~~~~---~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s---~  191 (505)
T KOG3207|consen  118 SNLKKLREISLDNYRVEDAGIE---EYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISS---N  191 (505)
T ss_pred             hhHHhhhheeecCccccccchh---hhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccc---c
Confidence            3578888889988876543322   235678999999999997753  2334456699999999999987643332   1


Q ss_pred             hccCCCCCcEEECCCCCCCchh-hHhhhccCCCcEEEcCCCCCCCCcChhhhhcccccceeecCCCcCCCCchhhhccCC
Q 001439          176 RLSRLNNLKVFDLSGNLFNNSI-LSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQACSGL  254 (1077)
Q Consensus       176 ~l~~l~~L~~L~Ls~n~i~~~~-~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l  254 (1077)
                      .-..+++|+.|.|++|.++... ......+|+|+.|++..|... .+......-++.|++|||++|++-++......+.+
T Consensus       192 ~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~-~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l  270 (505)
T KOG3207|consen  192 TTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEII-LIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTL  270 (505)
T ss_pred             chhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhccccc-ceecchhhhhhHHhhccccCCcccccccccccccc
Confidence            2236788999999999887533 334456799999999999532 23334556678899999999988877666667777


Q ss_pred             cccceeeecccccCCcchh----hhhcCCCCCcceeccccCccc
Q 001439          255 RKLSYLHLLRVGIRDGSKL----LQSMGSFPSLNTLDLSYNNFT  294 (1077)
Q Consensus       255 ~~L~~L~l~~~~~~~~~~~----~~~l~~~~~L~~L~l~~~~~~  294 (1077)
                      +.|..|.++.+++......    ......+++|+.|++..|++.
T Consensus       271 ~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~  314 (505)
T KOG3207|consen  271 PGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR  314 (505)
T ss_pred             cchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccc
Confidence            8888887777776543221    122344556666666666553

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.06  E-value=1.8e-10  Score=111.82  Aligned_cols=112  Identities=29%  Similarity=0.384  Sum_probs=40.8

Q ss_pred             ccCCCCCcEEeCCCCCCCchhhHHhh-ccCCCCEEeCCCCcCCCccCCcchhhccCCCCCcEEECCCCCCCchhhHhhhc
Q 001439          125 LSRLSNLKMLNLVGNLFNNSILSSLA-RLSSLTSLDLSANRLKGSIDIKGPKRLSRLNNLKVFDLSGNLFNNSILSSLAR  203 (1077)
Q Consensus       125 l~~l~~L~~L~Ls~n~l~~~~~~~l~-~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~  203 (1077)
                      +.+..++++|+|++|.|+.  .+.++ .+.+|+.||+++|.++..      +.+..+++|++|++++|.++.........
T Consensus        15 ~~n~~~~~~L~L~~n~I~~--Ie~L~~~l~~L~~L~Ls~N~I~~l------~~l~~L~~L~~L~L~~N~I~~i~~~l~~~   86 (175)
T PF14580_consen   15 YNNPVKLRELNLRGNQIST--IENLGATLDKLEVLDLSNNQITKL------EGLPGLPRLKTLDLSNNRISSISEGLDKN   86 (175)
T ss_dssp             -----------------------S--TT-TT--EEE-TTS--S--------TT----TT--EEE--SS---S-CHHHHHH
T ss_pred             ccccccccccccccccccc--ccchhhhhcCCCEEECCCCCCccc------cCccChhhhhhcccCCCCCCccccchHHh
Confidence            4455667888888887763  24555 477888888888887743      36777888888888888888643322246


Q ss_pred             cCCCcEEEcCCCCCCCCcChhhhhcccccceeecCCCcCCC
Q 001439          204 LSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDN  244 (1077)
Q Consensus       204 l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~i~~  244 (1077)
                      +++|++|++++|+|...-....++.+++|++|++.+|.++.
T Consensus        87 lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~  127 (175)
T PF14580_consen   87 LPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCE  127 (175)
T ss_dssp             -TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGG
T ss_pred             CCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccc
Confidence            78888888888888755556677788888888888887653

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.02  E-value=3.9e-10  Score=129.44  Aligned_cols=83  Identities=34%  Similarity=0.481  Sum_probs=36.4

Q ss_pred             CccCeeeccCccccccCCccccCCC-CCcEEEcccCcCCCCCCccccCCCCccEEECCCCcccCCCCccccCCCCCCEEe
Q 001439          635 TNLIWLQLEGNHFVGEIPQSLSKCS-SLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILD  713 (1077)
Q Consensus       635 ~~L~~L~L~~n~l~~~~~~~l~~l~-~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  713 (1077)
                      +.++.|++.+|.++ .++....... +|+.|++++|++. .+|..++.++.|+.|++++|++. .+|...+..+.|+.|+
T Consensus       116 ~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~  192 (394)
T COG4886         116 TNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLD  192 (394)
T ss_pred             cceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhhee
Confidence            44555555555555 2333333332 4555555555544 33333444444444444444444 2222222334444444


Q ss_pred             ccCCcCC
Q 001439          714 ISDNNIS  720 (1077)
Q Consensus       714 Ls~n~l~  720 (1077)
                      +++|++.
T Consensus       193 ls~N~i~  199 (394)
T COG4886         193 LSGNKIS  199 (394)
T ss_pred             ccCCccc
Confidence            4444443

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.99  E-value=3.9e-10  Score=115.90  Aligned_cols=170  Identities=22%  Similarity=0.256  Sum_probs=111.6

Q ss_pred             CCceEEEEcCCcccCc-cccccccccccCcCCcEeeCCCCCCCccccchh-------hhhccCCCCCcEEeCCCCCCCch
Q 001439           73 MGRVVVLDLSQTHRGE-YWYLNASLFTPFQQLESLDLRDNDIAGCVENEG-------LERLSRLSNLKMLNLVGNLFNNS  144 (1077)
Q Consensus        73 ~~~v~~l~L~~~~~~~-~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~-------~~~l~~l~~L~~L~Ls~n~l~~~  144 (1077)
                      ...+++++|+|+..+. ..+.-+..+++-++|+..++++- ++|......       .+++..+++|++||||.|.+...
T Consensus        29 ~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~  107 (382)
T KOG1909|consen   29 MDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPK  107 (382)
T ss_pred             cCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCcc
Confidence            3468999999994332 22334556778889999999974 344433322       24456788999999999998755


Q ss_pred             hhHH----hhccCCCCEEeCCCCcCCCccCCc---------chhhccCCCCCcEEECCCCCCCch----hhHhhhccCCC
Q 001439          145 ILSS----LARLSSLTSLDLSANRLKGSIDIK---------GPKRLSRLNNLKVFDLSGNLFNNS----ILSSLARLSSL  207 (1077)
Q Consensus       145 ~~~~----l~~l~~L~~L~Ls~n~l~~~~~~~---------~~~~l~~l~~L~~L~Ls~n~i~~~----~~~~l~~l~~L  207 (1077)
                      .++.    +.+++.|++|.|.+|.+...-...         ..+.+.+-+.|+++....|.+...    +...+...+.|
T Consensus       108 g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~l  187 (382)
T KOG1909|consen  108 GIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTL  187 (382)
T ss_pred             chHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhcccc
Confidence            4444    456899999999999875221111         112345567788888888877642    33445566778


Q ss_pred             cEEEcCCCCCCCC---cChhhhhcccccceeecCCCcCC
Q 001439          208 RSLLLYDNRLEGS---IDVKEFDSLSNLEELDMSYNEID  243 (1077)
Q Consensus       208 ~~L~L~~n~l~~~---~~~~~l~~l~~L~~L~Ls~n~i~  243 (1077)
                      +.+.+..|.|...   .-...+..+++|+.|||..|.++
T Consensus       188 eevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft  226 (382)
T KOG1909|consen  188 EEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFT  226 (382)
T ss_pred             ceEEEecccccCchhHHHHHHHHhCCcceeeecccchhh
Confidence            8888877776521   11244566677777777777654

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.95  E-value=3.4e-10  Score=119.45  Aligned_cols=218  Identities=24%  Similarity=0.259  Sum_probs=135.0

Q ss_pred             hhhccCCCcEEEcCCCCCCCCcCh-hhhhcccccceeecCCCcCCCCc-hhhhccCCcccceeeecccccCCcchhhhhc
Q 001439          200 SLARLSSLRSLLLYDNRLEGSIDV-KEFDSLSNLEELDMSYNEIDNFE-VPQACSGLRKLSYLHLLRVGIRDGSKLLQSM  277 (1077)
Q Consensus       200 ~l~~l~~L~~L~L~~n~l~~~~~~-~~l~~l~~L~~L~Ls~n~i~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l  277 (1077)
                      .=+++.+|+...|.++.+. .++. +....+++++.|||+.|-+..+. +...+..+++|+.|+++.|.+..        
T Consensus       116 kQsn~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~--------  186 (505)
T KOG3207|consen  116 KQSNLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSN--------  186 (505)
T ss_pred             HhhhHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccC--------
Confidence            3457889999999998876 2222 46778899999999999776553 33444555555555555554432        


Q ss_pred             CCCCCcceeccccCcccccccccccCCccCccccEEecchhHhhhhhhhHHHHhccCCCCcEEecccCcCCCCccccccc
Q 001439          278 GSFPSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQG  357 (1077)
Q Consensus       278 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~l~~~l~~L~~L~L~~~~~~~~~~~~~~~  357 (1077)
                                        .....  .-..++.|+.|.++.|  .++.....++...+|+|+.|.+..|........   .
T Consensus       187 ------------------~~~s~--~~~~l~~lK~L~l~~C--Gls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~---~  241 (505)
T KOG3207|consen  187 ------------------FISSN--TTLLLSHLKQLVLNSC--GLSWKDVQWILLTFPSLEVLYLEANEIILIKAT---S  241 (505)
T ss_pred             ------------------Ccccc--chhhhhhhheEEeccC--CCCHHHHHHHHHhCCcHHHhhhhcccccceecc---h
Confidence                              21111  0113455666777766  333444445555588888888888742111111   2


Q ss_pred             ccCCCCccEEEccCCcCCCCc-hhhhcCCCCCcEEecCCCccccccCCcc-----ccCCCCcceeecCCCeeeeecCccc
Q 001439          358 LCPLVHLQELHMADNDLRGSL-PWCLANMTSLRILDVSSNQLIGSISSSP-----LIHLTSIEDLILSDNHFQIPISLEP  431 (1077)
Q Consensus       358 l~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~Ls~n~l~~~i~~~~-----l~~l~~L~~L~L~~n~l~~~~~~~~  431 (1077)
                      ..-+..|++|+|++|++.... -...+.++.|+.|+++.+.+..--.++.     ...+++|+.|++..|++..-.....
T Consensus       242 ~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~  321 (505)
T KOG3207|consen  242 TKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNH  321 (505)
T ss_pred             hhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccch
Confidence            234567888888888776422 1345678888888888887763221222     2567888888888888765445555


Q ss_pred             ccCCCCccEEecCCCcceee
Q 001439          432 LFNHSRLKIFDAENNEINAE  451 (1077)
Q Consensus       432 ~~~l~~L~~l~l~~n~l~~~  451 (1077)
                      +..+++|+.+.+..|.+..+
T Consensus       322 l~~l~nlk~l~~~~n~ln~e  341 (505)
T KOG3207|consen  322 LRTLENLKHLRITLNYLNKE  341 (505)
T ss_pred             hhccchhhhhhccccccccc
Confidence            66667777777777766543

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.93  E-value=2.3e-10  Score=114.16  Aligned_cols=61  Identities=41%  Similarity=0.455  Sum_probs=42.9

Q ss_pred             ccccccEeccccccCCCCCCccccCCCCCCEEEccCccccccCchhccCCCCCCEEECcCCcCC
Q 001439          753 NCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLH  816 (1077)
Q Consensus       753 ~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~  816 (1077)
                      ....|+.+||++|.|+ .+.+...-.|.++.|++++|.+... . .+..+++|+.||||+|.++
T Consensus       282 TWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v-~-nLa~L~~L~~LDLS~N~Ls  342 (490)
T KOG1259|consen  282 TWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV-Q-NLAELPQLQLLDLSGNLLA  342 (490)
T ss_pred             hHhhhhhccccccchh-hhhhhhhhccceeEEeccccceeee-h-hhhhcccceEeecccchhH
Confidence            3456778888888777 4566677777888888888877632 2 2666777777777777665

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.92  E-value=7.4e-10  Score=134.84  Aligned_cols=130  Identities=31%  Similarity=0.342  Sum_probs=93.6

Q ss_pred             cCcCCcEeeCCCCC--CCccccchhhhhccCCCCCcEEeCCCCCCCchhhHHhhccCCCCEEeCCCCcCCCccCCcchhh
Q 001439           99 PFQQLESLDLRDND--IAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILSSLARLSSLTSLDLSANRLKGSIDIKGPKR  176 (1077)
Q Consensus        99 ~l~~L~~L~Ls~n~--~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~  176 (1077)
                      ..+.|++|-+.+|.  +....    .++|..+++|++|||++|.--+.+|++|++|-+||||+++++.+.     .+|..
T Consensus       543 ~~~~L~tLll~~n~~~l~~is----~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-----~LP~~  613 (889)
T KOG4658|consen  543 ENPKLRTLLLQRNSDWLLEIS----GEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-----HLPSG  613 (889)
T ss_pred             CCCccceEEEeecchhhhhcC----HHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-----ccchH
Confidence            34578888888875  32221    134788999999999988766789999999999999999999876     34479


Q ss_pred             ccCCCCCcEEECCCCCCCchhhHhhhccCCCcEEEcCCCCCC-CCcChhhhhcccccceeec
Q 001439          177 LSRLNNLKVFDLSGNLFNNSILSSLARLSSLRSLLLYDNRLE-GSIDVKEFDSLSNLEELDM  237 (1077)
Q Consensus       177 l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~-~~~~~~~l~~l~~L~~L~L  237 (1077)
                      +.++..|.+||+..+.....+|.....+++||+|.+...... +......+..+.+|+.+..
T Consensus       614 l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~  675 (889)
T KOG4658|consen  614 LGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSI  675 (889)
T ss_pred             HHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhhee
Confidence            999999999999988766566777777999999988776522 1122233344444444444

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.92  E-value=2.1e-09  Score=104.36  Aligned_cols=89  Identities=34%  Similarity=0.475  Sum_probs=28.3

Q ss_pred             hhccCCCCEEeCCCCcCCCccCCcchhhcc-CCCCCcEEECCCCCCCchhhHhhhccCCCcEEEcCCCCCCCCcChhhhh
Q 001439          149 LARLSSLTSLDLSANRLKGSIDIKGPKRLS-RLNNLKVFDLSGNLFNNSILSSLARLSSLRSLLLYDNRLEGSIDVKEFD  227 (1077)
Q Consensus       149 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~-~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~  227 (1077)
                      +.+..++++|+|++|.+...      +.++ .+.+|++|++++|.++.  .+.+..++.|++|++++|+++ .+......
T Consensus        15 ~~n~~~~~~L~L~~n~I~~I------e~L~~~l~~L~~L~Ls~N~I~~--l~~l~~L~~L~~L~L~~N~I~-~i~~~l~~   85 (175)
T PF14580_consen   15 YNNPVKLRELNLRGNQISTI------ENLGATLDKLEVLDLSNNQITK--LEGLPGLPRLKTLDLSNNRIS-SISEGLDK   85 (175)
T ss_dssp             ---------------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS----S-CHHHHH
T ss_pred             cccccccccccccccccccc------cchhhhhcCCCEEECCCCCCcc--ccCccChhhhhhcccCCCCCC-ccccchHH
Confidence            44566789999999987642      3565 57889999999998875  346778889999999999987 34422224


Q ss_pred             cccccceeecCCCcCCCCc
Q 001439          228 SLSNLEELDMSYNEIDNFE  246 (1077)
Q Consensus       228 ~l~~L~~L~Ls~n~i~~~~  246 (1077)
                      .+++|++|++++|++.++.
T Consensus        86 ~lp~L~~L~L~~N~I~~l~  104 (175)
T PF14580_consen   86 NLPNLQELYLSNNKISDLN  104 (175)
T ss_dssp             H-TT--EEE-TTS---SCC
T ss_pred             hCCcCCEEECcCCcCCChH
Confidence            6888899999888887644

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.85  E-value=4.8e-10  Score=112.08  Aligned_cols=230  Identities=23%  Similarity=0.225  Sum_probs=141.9

Q ss_pred             CCcEEeCCCCCCCchhhHHhhcc--CCCCEEeCCCCcCCCccCCcchhhcc-CCCCCcEEECCCCCCCch-hhHhhhccC
Q 001439          130 NLKMLNLVGNLFNNSILSSLARL--SSLTSLDLSANRLKGSIDIKGPKRLS-RLNNLKVFDLSGNLFNNS-ILSSLARLS  205 (1077)
Q Consensus       130 ~L~~L~Ls~n~l~~~~~~~l~~l--~~L~~L~Ls~n~l~~~~~~~~~~~l~-~l~~L~~L~Ls~n~i~~~-~~~~l~~l~  205 (1077)
                      .-+.||+.+-.+.   |..++.+  .....+.+.......  | .+++.+. .-+.||+||||...++.. +-..++.|.
T Consensus       137 lW~~lDl~~r~i~---p~~l~~l~~rgV~v~Rlar~~~~~--p-rlae~~~~frsRlq~lDLS~s~it~stl~~iLs~C~  210 (419)
T KOG2120|consen  137 LWQTLDLTGRNIH---PDVLGRLLSRGVIVFRLARSFMDQ--P-RLAEHFSPFRSRLQHLDLSNSVITVSTLHGILSQCS  210 (419)
T ss_pred             ceeeeccCCCccC---hhHHHHHHhCCeEEEEcchhhhcC--c-hhhhhhhhhhhhhHHhhcchhheeHHHHHHHHHHHH
Confidence            3466777776665   5555554  334444444332221  1 1111121 124588888888777653 333467788


Q ss_pred             CCcEEEcCCCCCCCCcChhhhhcccccceeecCCC-cCCCCchhhhccCCcccceeeecccccCCcchhhhhcCCCCCcc
Q 001439          206 SLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYN-EIDNFEVPQACSGLRKLSYLHLLRVGIRDGSKLLQSMGSFPSLN  284 (1077)
Q Consensus       206 ~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n-~i~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~  284 (1077)
                      +|+.|.+.++++...+. ..+++-.+|+.|+++.+ .++.....-.+.+|+.|+.|++++|....... -..+.      
T Consensus       211 kLk~lSlEg~~LdD~I~-~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~V-tv~V~------  282 (419)
T KOG2120|consen  211 KLKNLSLEGLRLDDPIV-NTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKV-TVAVA------  282 (419)
T ss_pred             hhhhccccccccCcHHH-HHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhh-hHHHh------
Confidence            88888888888775443 56777788888888876 34555555556666666666666665543221 00000      


Q ss_pred             eeccccCcccccccccccCCccCccccEEecchhHhhhhhhhHHHHhccCCCCcEEecccCcCCCCcccccccccCCCCc
Q 001439          285 TLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHL  364 (1077)
Q Consensus       285 ~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~l~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~l~~L  364 (1077)
                                          .--++|+.|++++++-.+.....+.+...+|+|.+|||++|-....  .....+.+++.|
T Consensus       283 --------------------hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~--~~~~~~~kf~~L  340 (419)
T KOG2120|consen  283 --------------------HISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKN--DCFQEFFKFNYL  340 (419)
T ss_pred             --------------------hhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCc--hHHHHHHhcchh
Confidence                                0123567777777765555566666767799999999998754322  333467788999


Q ss_pred             cEEEccCCcCCCCchhhh---cCCCCCcEEecCCCc
Q 001439          365 QELHMADNDLRGSLPWCL---ANMTSLRILDVSSNQ  397 (1077)
Q Consensus       365 ~~L~L~~n~l~~~~p~~l---~~l~~L~~L~Ls~n~  397 (1077)
                      ++|.++.|..  ++|..+   ...+.|++||+.++-
T Consensus       341 ~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~v  374 (419)
T KOG2120|consen  341 QHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGCV  374 (419)
T ss_pred             eeeehhhhcC--CChHHeeeeccCcceEEEEecccc
Confidence            9999998854  566554   567889999998874

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.78  E-value=1.6e-09  Score=108.34  Aligned_cols=132  Identities=30%  Similarity=0.424  Sum_probs=100.4

Q ss_pred             CCCCCcEEeCCCCCCCchhhHHhhccCCCCEEeCCCCcCCCccCCcchhhccCCCCCcEEECCCCCCCchhhHhhhccCC
Q 001439          127 RLSNLKMLNLVGNLFNNSILSSLARLSSLTSLDLSANRLKGSIDIKGPKRLSRLNNLKVFDLSGNLFNNSILSSLARLSS  206 (1077)
Q Consensus       127 ~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~  206 (1077)
                      ..+.|+.||||+|.|+ .+.+++.-.+.++.|++|+|.+...      ..+..+++|++||||+|.++. +...=.++.+
T Consensus       282 TWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v------~nLa~L~~L~~LDLS~N~Ls~-~~Gwh~KLGN  353 (490)
T KOG1259|consen  282 TWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV------QNLAELPQLQLLDLSGNLLAE-CVGWHLKLGN  353 (490)
T ss_pred             hHhhhhhccccccchh-hhhhhhhhccceeEEeccccceeee------hhhhhcccceEeecccchhHh-hhhhHhhhcC
Confidence            4567888889888887 6777887788889999998887643      357888888999998887763 3334456778


Q ss_pred             CcEEEcCCCCCCCCcChhhhhcccccceeecCCCcCCCCchhhhccCCcccceeeecccccCC
Q 001439          207 LRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGIRD  269 (1077)
Q Consensus       207 L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~l~~~~~~~  269 (1077)
                      .++|.+++|.+.   ....+.++-+|..||+++|+|........+++++-|+.+.+.+|.+..
T Consensus       354 IKtL~La~N~iE---~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~  413 (490)
T KOG1259|consen  354 IKTLKLAQNKIE---TLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG  413 (490)
T ss_pred             EeeeehhhhhHh---hhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence            888888888875   345677788888888888888877766777777777777777766654

>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=98.78  E-value=5.3e-09  Score=75.74  Aligned_cols=41  Identities=37%  Similarity=0.733  Sum_probs=30.7

Q ss_pred             HHHHHHHHhchhhcc-CCCCcccCCCCCCCCCCCccccceEec
Q 001439           29 NHERFALLQLKLFFI-DPYNYLLDWVDDEGATDCCQWERVSCN   70 (1077)
Q Consensus        29 ~~~~~all~~k~~~~-~~~~~l~~w~~~~~~~~~c~w~gv~c~   70 (1077)
                      ++|++||++||+++. +|.+.+.+|+... ..+||.|.||+|+
T Consensus         2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~~~-~~~~C~W~GV~Cd   43 (43)
T PF08263_consen    2 NQDRQALLAFKKSLNNDPSGVLSSWNPSS-DSDPCSWSGVTCD   43 (43)
T ss_dssp             HHHHHHHHHHHHCTT-SC-CCCTT--TT---S-CCCSTTEEE-
T ss_pred             cHHHHHHHHHHHhcccccCcccccCCCcC-CCCCeeeccEEeC
Confidence            689999999999998 4668999998631 3699999999996

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.70  E-value=8.8e-09  Score=82.02  Aligned_cols=59  Identities=39%  Similarity=0.569  Sum_probs=31.8

Q ss_pred             cCceeeCcCCcCCCCCCccccCCCCCCeEeCCCCcCcccCCCcccCCCCcceEEccccc
Q 001439          905 KIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNN  963 (1077)
Q Consensus       905 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~l~ls~N~  963 (1077)
                      +|++|++++|+++...++.|..+++|++||+++|+++...|..|..+++|++|++++|+
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            34555555555554444555555555555555555555444555555555555555554

...

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.68  E-value=1.7e-08  Score=123.21  Aligned_cols=131  Identities=24%  Similarity=0.239  Sum_probs=96.3

Q ss_pred             cCcCCcEeeCCCCCCCccccchhhhhccCCCCCcEEeCCCCC--CCchhhHHhhccCCCCEEeCCCCcCCCccCCcchhh
Q 001439           99 PFQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNL--FNNSILSSLARLSSLTSLDLSANRLKGSIDIKGPKR  176 (1077)
Q Consensus        99 ~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~--l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~  176 (1077)
                      .....|...+-+|.+......      ...+.|+.|-+.+|.  +.......|..++.|++|||++|.-.+.+    |..
T Consensus       521 ~~~~~rr~s~~~~~~~~~~~~------~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~L----P~~  590 (889)
T KOG4658|consen  521 SWNSVRRMSLMNNKIEHIAGS------SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKL----PSS  590 (889)
T ss_pred             chhheeEEEEeccchhhccCC------CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcC----ChH
Confidence            335566666666665433321      334578888888885  44334455778999999999987644444    479


Q ss_pred             ccCCCCCcEEECCCCCCCchhhHhhhccCCCcEEEcCCCCCCCCcChhhhhcccccceeecCCCc
Q 001439          177 LSRLNNLKVFDLSGNLFNNSILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNE  241 (1077)
Q Consensus       177 l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~  241 (1077)
                      ++++-+||+|++++..+. .+|..++++.+|.+|++..+.....+ ......+++|++|.+....
T Consensus       591 I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~-~~i~~~L~~Lr~L~l~~s~  653 (889)
T KOG4658|consen  591 IGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESI-PGILLELQSLRVLRLPRSA  653 (889)
T ss_pred             HhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccc-cchhhhcccccEEEeeccc
Confidence            999999999999999988 78999999999999999988765444 3666678899999887664

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.68  E-value=7.8e-09  Score=82.30  Aligned_cols=60  Identities=48%  Similarity=0.646  Sum_probs=56.5

Q ss_pred             CCceEECCCCcCCCCCcccccccccCceeeCcCCcCCCCCCccccCCCCCCeEeCCCCcC
Q 001439          881 LLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKL  940 (1077)
Q Consensus       881 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l  940 (1077)
                      .|+.|++++|+++...+..|.++++|++|++++|+++...|..|.++++|++|++++|+|
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            678999999999977778999999999999999999999999999999999999999986

...

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.63  E-value=4.6e-09  Score=120.41  Aligned_cols=85  Identities=26%  Similarity=0.294  Sum_probs=50.8

Q ss_pred             CceEECCCCcCCCCCcccccccccCceeeCcCCcCCCCCCccccCCCCCCeEeCCCCcCccc---CCCc-ccCCCCcceE
Q 001439          882 LSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWK---IPYQ-LVELNTLAVF  957 (1077)
Q Consensus       882 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~---ip~~-l~~l~~L~~l  957 (1077)
                      |+.+++++|++. .++..+..+..+..|++++|++...-  .+.....+..+.++.|.+...   .... ....+.+..+
T Consensus       234 L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (414)
T KOG0531|consen  234 LRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNLE--GLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTL  310 (414)
T ss_pred             HHHHhcccCccc-cccccccccccccccchhhccccccc--cccccchHHHhccCcchhcchhhhhcccccccccccccc
Confidence            556777777766 23345566677777777777776432  244555666677777766521   1111 4455667777


Q ss_pred             EcccccccccCC
Q 001439          958 SVAYNNLSGKIP  969 (1077)
Q Consensus       958 ~ls~N~l~g~~p  969 (1077)
                      .+.+|......+
T Consensus       311 ~~~~~~~~~~~~  322 (414)
T KOG0531|consen  311 TLELNPIRKISS  322 (414)
T ss_pred             ccccCccccccc
Confidence            777777665444

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.62  E-value=3.5e-08  Score=97.69  Aligned_cols=94  Identities=21%  Similarity=0.282  Sum_probs=50.3

Q ss_pred             CcCCcEeeCCCCCCCccccchhhhhccCCCCCcEEeCCCCC---CCchhhH-------HhhccCCCCEEeCCCCcCCCcc
Q 001439          100 FQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNL---FNNSILS-------SLARLSSLTSLDLSANRLKGSI  169 (1077)
Q Consensus       100 l~~L~~L~Ls~n~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~---l~~~~~~-------~l~~l~~L~~L~Ls~n~l~~~~  169 (1077)
                      +..+..+|||+|.|.........+.+.+-++|+..+++.-.   ..+++++       .+.+|++|+..+||.|.+....
T Consensus        29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~  108 (388)
T COG5238          29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF  108 (388)
T ss_pred             hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence            55666666666666555444444556666667776666532   1223333       2344556666666666555444


Q ss_pred             CCcchhhccCCCCCcEEECCCCCC
Q 001439          170 DIKGPKRLSRLNNLKVFDLSGNLF  193 (1077)
Q Consensus       170 ~~~~~~~l~~l~~L~~L~Ls~n~i  193 (1077)
                      |..+-..|++-+.|.+|.+++|.+
T Consensus       109 ~e~L~d~is~~t~l~HL~l~NnGl  132 (388)
T COG5238         109 PEELGDLISSSTDLVHLKLNNNGL  132 (388)
T ss_pred             chHHHHHHhcCCCceeEEeecCCC
Confidence            433334445555555555555543

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.62  E-value=6.4e-09  Score=104.20  Aligned_cols=188  Identities=16%  Similarity=0.080  Sum_probs=121.4

Q ss_pred             ccceeecCCCcCCCCchhhhccCCcccceeeecccccCCcchhhhhcCCCCCcceeccccCcccccccccccCCccCccc
Q 001439          231 NLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTETVTTTTQGFPHFKSL  310 (1077)
Q Consensus       231 ~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L  310 (1077)
                      .||++||+...++.-.+...++.|.+|+.|.+.++...  +.+...+.+..+|+.|+++.++..+..... .-+.+|+.|
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~Ld--D~I~~~iAkN~~L~~lnlsm~sG~t~n~~~-ll~~scs~L  262 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLD--DPIVNTIAKNSNLVRLNLSMCSGFTENALQ-LLLSSCSRL  262 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccC--cHHHHHHhccccceeeccccccccchhHHH-HHHHhhhhH
Confidence            46666776666666566666666777777766666554  334456667778888888877654432211 235678888


Q ss_pred             cEEecchhHhhhhhhhHHHHhccCCCCcEEecccCcCCCCcccccccccCCCCccEEEccCCcC-CCCchhhhcCCCCCc
Q 001439          311 KELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDL-RGSLPWCLANMTSLR  389 (1077)
Q Consensus       311 ~~L~L~~n~~~~~~~~~~~l~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l-~~~~p~~l~~l~~L~  389 (1077)
                      .+|++++|... ...+-..+..--++|+.|+++++.-.-....+..-...+++|.+|||++|.- +......|.+++.|+
T Consensus       263 ~~LNlsWc~l~-~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~  341 (419)
T KOG2120|consen  263 DELNLSWCFLF-TEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQ  341 (419)
T ss_pred             hhcCchHhhcc-chhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchhe
Confidence            88888888432 1222233333357899999998753211111111235799999999999853 434445677899999


Q ss_pred             EEecCCCccccccCCccccCCCCcceeecCCCe
Q 001439          390 ILDVSSNQLIGSISSSPLIHLTSIEDLILSDNH  422 (1077)
Q Consensus       390 ~L~Ls~n~l~~~i~~~~l~~l~~L~~L~L~~n~  422 (1077)
                      +|.++.|.....-....+...++|.+|++.++-
T Consensus       342 ~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~v  374 (419)
T KOG2120|consen  342 HLSLSRCYDIIPETLLELNSKPSLVYLDVFGCV  374 (419)
T ss_pred             eeehhhhcCCChHHeeeeccCcceEEEEecccc
Confidence            999999975421112345677899999998873

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.61  E-value=6.2e-09  Score=119.35  Aligned_cols=132  Identities=39%  Similarity=0.528  Sum_probs=90.7

Q ss_pred             cCcCCcEeeCCCCCCCccccchhhhhccCCCCCcEEeCCCCCCCchhhHHhhccCCCCEEeCCCCcCCCccCCcchhhcc
Q 001439           99 PFQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILSSLARLSSLTSLDLSANRLKGSIDIKGPKRLS  178 (1077)
Q Consensus        99 ~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~  178 (1077)
                      .+..++.++++.|.+....     ..+..+++|.+|++.+|.+.. +...+..+++|++|++++|.|...      ..+.
T Consensus        70 ~l~~l~~l~l~~n~i~~~~-----~~l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~i------~~l~  137 (414)
T KOG0531|consen   70 SLTSLKELNLRQNLIAKIL-----NHLSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITKL------EGLS  137 (414)
T ss_pred             HhHhHHhhccchhhhhhhh-----cccccccceeeeeccccchhh-cccchhhhhcchheeccccccccc------cchh
Confidence            4566666777777765422     226777888888888888763 333367788888888888887654      3567


Q ss_pred             CCCCCcEEECCCCCCCchhhHhhhccCCCcEEEcCCCCCCCCcCh-hhhhcccccceeecCCCcCCCCc
Q 001439          179 RLNNLKVFDLSGNLFNNSILSSLARLSSLRSLLLYDNRLEGSIDV-KEFDSLSNLEELDMSYNEIDNFE  246 (1077)
Q Consensus       179 ~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~-~~l~~l~~L~~L~Ls~n~i~~~~  246 (1077)
                      .++.|+.|++++|.+..  ...+..++.|+.+++++|++. .+.. . ...+.+++.+++.+|.+..+.
T Consensus       138 ~l~~L~~L~l~~N~i~~--~~~~~~l~~L~~l~l~~n~i~-~ie~~~-~~~~~~l~~l~l~~n~i~~i~  202 (414)
T KOG0531|consen  138 TLTLLKELNLSGNLISD--ISGLESLKSLKLLDLSYNRIV-DIENDE-LSELISLEELDLGGNSIREIE  202 (414)
T ss_pred             hccchhhheeccCcchh--ccCCccchhhhcccCCcchhh-hhhhhh-hhhccchHHHhccCCchhccc
Confidence            77778888888888764  345566778888888888876 2221 1 577778888888888766543

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.43  E-value=1.2e-07  Score=95.14  Aligned_cols=67  Identities=21%  Similarity=0.303  Sum_probs=45.2

Q ss_pred             CCCCcEEecccCcCCCCcccccccccCCCCccEEEccCCcCCCCc-hhhhcCCCCCcEEecCCCcccccc
Q 001439          334 MPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSL-PWCLANMTSLRILDVSSNQLIGSI  402 (1077)
Q Consensus       334 l~~L~~L~L~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~Ls~n~l~~~i  402 (1077)
                      +|++..+-+..|.+......  ++..+++.+-.|+|+.+++...- -..+.++++|+-|.++++.+.+.+
T Consensus       198 Fpnv~sv~v~e~PlK~~s~e--k~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l  265 (418)
T KOG2982|consen  198 FPNVNSVFVCEGPLKTESSE--KGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPL  265 (418)
T ss_pred             cccchheeeecCcccchhhc--ccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccc
Confidence            67888887777766443322  25566777778888888776432 245677888888888888776543

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.42  E-value=1.3e-08  Score=113.65  Aligned_cols=162  Identities=27%  Similarity=0.291  Sum_probs=113.1

Q ss_pred             cccCcCCcEeeCCCCCCCccccchh---------------------hhhccC------CCCCcEEeCCCCCCCchhhHHh
Q 001439           97 FTPFQQLESLDLRDNDIAGCVENEG---------------------LERLSR------LSNLKMLNLVGNLFNNSILSSL  149 (1077)
Q Consensus        97 ~~~l~~L~~L~Ls~n~~~~~~~~~~---------------------~~~l~~------l~~L~~L~Ls~n~l~~~~~~~l  149 (1077)
                      +..|+.||+|.|+++++.....-.+                     ....+.      --.|...+.++|.+. .+.+++
T Consensus       105 ifpF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~-~mD~SL  183 (1096)
T KOG1859|consen  105 IFPFRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLV-LMDESL  183 (1096)
T ss_pred             eccccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHH-hHHHHH
Confidence            3578899999999888753211000                     000001      123455566666665 556777


Q ss_pred             hccCCCCEEeCCCCcCCCccCCcchhhccCCCCCcEEECCCCCCCchhhHhhhccCCCcEEEcCCCCCCCCcChhhhhcc
Q 001439          150 ARLSSLTSLDLSANRLKGSIDIKGPKRLSRLNNLKVFDLSGNLFNNSILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSL  229 (1077)
Q Consensus       150 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l  229 (1077)
                      .-+++|++|||++|++...      ..+..|++|++|||++|.+....--....+. |+.|.+++|.++   ....+.++
T Consensus       184 qll~ale~LnLshNk~~~v------~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~---tL~gie~L  253 (1096)
T KOG1859|consen  184 QLLPALESLNLSHNKFTKV------DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALT---TLRGIENL  253 (1096)
T ss_pred             HHHHHhhhhccchhhhhhh------HHHHhcccccccccccchhccccccchhhhh-heeeeecccHHH---hhhhHHhh
Confidence            7788999999999988753      4788899999999999988743222334444 889999999876   34678888


Q ss_pred             cccceeecCCCcCCCCchhhhccCCcccceeeecccccCC
Q 001439          230 SNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGIRD  269 (1077)
Q Consensus       230 ~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~l~~~~~~~  269 (1077)
                      ++|+.||+++|-+.+..-...+..+..|+.|.+.+|.+.-
T Consensus       254 ksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c  293 (1096)
T KOG1859|consen  254 KSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCC  293 (1096)
T ss_pred             hhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcccc
Confidence            8999999999988877777777777788888887776653

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.37  E-value=4.1e-08  Score=103.45  Aligned_cols=286  Identities=19%  Similarity=0.171  Sum_probs=145.5

Q ss_pred             CCcEeeCCCCCCCccccchhhhhccCCCCCcEEeCCCCC-CCchhhHHhhc-cCCCCEEeCCCCcCCCccCCcchh-hcc
Q 001439          102 QLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNL-FNNSILSSLAR-LSSLTSLDLSANRLKGSIDIKGPK-RLS  178 (1077)
Q Consensus       102 ~L~~L~Ls~n~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~-l~~~~~~~l~~-l~~L~~L~Ls~n~l~~~~~~~~~~-~l~  178 (1077)
                      .|+.|.++++.=.+..+-.  ....+++++.+|++.++. +++..-.++++ +++|++|++..|..-...   ..+ -..
T Consensus       139 ~lk~LSlrG~r~v~~sslr--t~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~---~Lk~la~  213 (483)
T KOG4341|consen  139 FLKELSLRGCRAVGDSSLR--TFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDV---SLKYLAE  213 (483)
T ss_pred             ccccccccccccCCcchhh--HHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHH---HHHHHHH
Confidence            6777778776533322211  123567777777777774 44444444443 788888888775422111   112 234


Q ss_pred             CCCCCcEEECCCCC-CCchhhHh-hhccCCCcEEEcCCCCCCCCcChhhhhc----ccccceeecCCC-cCCCCchhhhc
Q 001439          179 RLNNLKVFDLSGNL-FNNSILSS-LARLSSLRSLLLYDNRLEGSIDVKEFDS----LSNLEELDMSYN-EIDNFEVPQAC  251 (1077)
Q Consensus       179 ~l~~L~~L~Ls~n~-i~~~~~~~-l~~l~~L~~L~L~~n~l~~~~~~~~l~~----l~~L~~L~Ls~n-~i~~~~~~~~~  251 (1077)
                      .|++|++|+++.|. +++..... ..++..++.+.+.+|.   ..+.+.+..    +..+.++++..+ .+++..+....
T Consensus       214 gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~---e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~  290 (483)
T KOG4341|consen  214 GCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCL---ELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIA  290 (483)
T ss_pred             hhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccc---cccHHHHHHHhccChHhhccchhhhccccchHHHHHh
Confidence            57888888888773 44422222 3445566666666554   233333332    233555554443 45666666666


Q ss_pred             cCCcccceeeecccccCCcchhhhhcCCCCCcceeccccCcccccccccccCCccCccccEEecchhHhhhhhhhHHHHh
Q 001439          252 SGLRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDARIALNTSFLQIIG  331 (1077)
Q Consensus       252 ~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~l~  331 (1077)
                      ..+..|+.+..+++.......+..--.+.++|+.+.+.+++........ .--.+++.|+.+++.++.....+.+.+ +.
T Consensus       291 ~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft-~l~rn~~~Le~l~~e~~~~~~d~tL~s-ls  368 (483)
T KOG4341|consen  291 CGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFT-MLGRNCPHLERLDLEECGLITDGTLAS-LS  368 (483)
T ss_pred             hhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhh-hhhcCChhhhhhcccccceehhhhHhh-hc
Confidence            6777777777777666444444444456677777777777643221110 011245566666666653333332222 22


Q ss_pred             ccCCCCcEEecccCcCCCCc--ccccccccCCCCccEEEccCCcCCC-CchhhhcCCCCCcEEecCCCc
Q 001439          332 ESMPSIQYLSLSNSSVSNNS--RTLDQGLCPLVHLQELHMADNDLRG-SLPWCLANMTSLRILDVSSNQ  397 (1077)
Q Consensus       332 ~~l~~L~~L~L~~~~~~~~~--~~~~~~l~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~Ls~n~  397 (1077)
                      ..++.|+++.+++|......  ..+...-+....|+.+.|++++.+. ..-..+..+++|+.+++-+++
T Consensus       369 ~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q  437 (483)
T KOG4341|consen  369 RNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ  437 (483)
T ss_pred             cCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence            23566666666655432111  1111122334455555555554331 111223344445554444443

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.37  E-value=8.5e-08  Score=101.16  Aligned_cols=290  Identities=16%  Similarity=0.091  Sum_probs=192.0

Q ss_pred             CCCcEEeCCCCCCCc--hhhHHhhccCCCCEEeCCCCcCCCccCCcchhhc-cCCCCCcEEECCCC-CCCchhhH-hhhc
Q 001439          129 SNLKMLNLVGNLFNN--SILSSLARLSSLTSLDLSANRLKGSIDIKGPKRL-SRLNNLKVFDLSGN-LFNNSILS-SLAR  203 (1077)
Q Consensus       129 ~~L~~L~Ls~n~l~~--~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l-~~l~~L~~L~Ls~n-~i~~~~~~-~l~~  203 (1077)
                      ..||.|.++++.-.+  .+-..-.+++++++|++.+|......   ....+ ..|++|++|++..| .++..... -...
T Consensus       138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~---s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~g  214 (483)
T KOG4341|consen  138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDS---SLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEG  214 (483)
T ss_pred             cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHH---HHHHHHHhcchhhhhhhcccchhHHHHHHHHHHh
Confidence            468888898886332  23334456899999999998733221   11233 56899999999996 46655555 3346


Q ss_pred             cCCCcEEEcCCCCC-CCCcChhhhhcccccceeecCCCcCCCC-chhhhccCCcccceeeecccccCCcchhhhhcCCCC
Q 001439          204 LSSLRSLLLYDNRL-EGSIDVKEFDSLSNLEELDMSYNEIDNF-EVPQACSGLRKLSYLHLLRVGIRDGSKLLQSMGSFP  281 (1077)
Q Consensus       204 l~~L~~L~L~~n~l-~~~~~~~~l~~l~~L~~L~Ls~n~i~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~  281 (1077)
                      +++|++|++++|.- ++.--.....+++.++.+.+.++.-... .+...-..+..+.++++..|...+...+...-..+.
T Consensus       215 C~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~  294 (483)
T KOG4341|consen  215 CRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCH  294 (483)
T ss_pred             hhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhh
Confidence            89999999999863 2211113345677788888887632222 222233445566777777776655666666667788


Q ss_pred             CcceeccccCcccccccccccCCccCccccEEecchhHhhhhhhhHHHHhccCCCCcEEecccCcCCCCcccccccccCC
Q 001439          282 SLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPL  361 (1077)
Q Consensus       282 ~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~l~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~l  361 (1077)
                      .|+.|+.+++......... .--.++.+|+.+.+..++ .+...-...++..++.|+.+++..+...... .+...-.++
T Consensus       295 ~lq~l~~s~~t~~~d~~l~-aLg~~~~~L~~l~l~~c~-~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~-tL~sls~~C  371 (483)
T KOG4341|consen  295 ALQVLCYSSCTDITDEVLW-ALGQHCHNLQVLELSGCQ-QFSDRGFTMLGRNCPHLERLDLEECGLITDG-TLASLSRNC  371 (483)
T ss_pred             HhhhhcccCCCCCchHHHH-HHhcCCCceEEEeccccc-hhhhhhhhhhhcCChhhhhhcccccceehhh-hHhhhccCC
Confidence            9999999887653321111 122456899999999986 3556666777777899999999988653222 222234568


Q ss_pred             CCccEEEccCCcCCCCc-----hhhhcCCCCCcEEecCCCccccccCCccccCCCCcceeecCCCeee
Q 001439          362 VHLQELHMADNDLRGSL-----PWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQ  424 (1077)
Q Consensus       362 ~~L~~L~L~~n~l~~~~-----p~~l~~l~~L~~L~Ls~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~  424 (1077)
                      +.|+++.+++|......     ...-..+..|+.+.+++++.+.+-....+..+++|+.+++-+++-.
T Consensus       372 ~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~v  439 (483)
T KOG4341|consen  372 PRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDV  439 (483)
T ss_pred             chhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhh
Confidence            99999999988653221     1222356789999999998776554567778899999999888544

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.10  E-value=1.9e-07  Score=104.75  Aligned_cols=129  Identities=29%  Similarity=0.326  Sum_probs=104.1

Q ss_pred             cCCcEeeCCCCCCCccccchhhhhccCCCCCcEEeCCCCCCCchhhHHhhccCCCCEEeCCCCcCCCccCCcchhhccCC
Q 001439          101 QQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILSSLARLSSLTSLDLSANRLKGSIDIKGPKRLSRL  180 (1077)
Q Consensus       101 ~~L~~L~Ls~n~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~l  180 (1077)
                      -.|.+.+.++|.+....     +++.-+++|+.|||++|+++.  ...+..|++|.+|||++|.++- +|.   -....|
T Consensus       164 n~L~~a~fsyN~L~~mD-----~SLqll~ale~LnLshNk~~~--v~~Lr~l~~LkhLDlsyN~L~~-vp~---l~~~gc  232 (1096)
T KOG1859|consen  164 NKLATASFSYNRLVLMD-----ESLQLLPALESLNLSHNKFTK--VDNLRRLPKLKHLDLSYNCLRH-VPQ---LSMVGC  232 (1096)
T ss_pred             hhHhhhhcchhhHHhHH-----HHHHHHHHhhhhccchhhhhh--hHHHHhcccccccccccchhcc-ccc---cchhhh
Confidence            35677778888776433     346778999999999999974  3488899999999999999874 342   122334


Q ss_pred             CCCcEEECCCCCCCchhhHhhhccCCCcEEEcCCCCCCCCcChhhhhcccccceeecCCCcCC
Q 001439          181 NNLKVFDLSGNLFNNSILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEID  243 (1077)
Q Consensus       181 ~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~i~  243 (1077)
                      . |+.|.+++|.++.  ...+.++.+|+.||+++|-+.+.-....+..+..|+.|+|.+|.+-
T Consensus       233 ~-L~~L~lrnN~l~t--L~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  233 K-LQLLNLRNNALTT--LRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             h-heeeeecccHHHh--hhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence            4 9999999998865  5678999999999999999988777788899999999999999653

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.09  E-value=1.4e-07  Score=83.75  Aligned_cols=57  Identities=25%  Similarity=0.446  Sum_probs=26.5

Q ss_pred             ceEECCCCcCCCCCcccccccccCceeeCcCCcCCCCCCccccCCCCCCeEeCCCCcCc
Q 001439          883 SGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLS  941 (1077)
Q Consensus       883 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~  941 (1077)
                      +.|+|++|.++ .+|.++..++.|+.||++.|.+. ..|..|..|.+|-.||..+|.+.
T Consensus        80 t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~  136 (177)
T KOG4579|consen   80 TTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA  136 (177)
T ss_pred             hhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc
Confidence            34444444444 34444444444555555444444 33344444444444444444444

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.06  E-value=1.8e-06  Score=87.09  Aligned_cols=65  Identities=17%  Similarity=0.133  Sum_probs=36.2

Q ss_pred             CCCCcEEecCCCccccccCCccccCCCCcceeecCCCeeeeecCcccccCCCCccEEecCCCcce
Q 001439          385 MTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEIN  449 (1077)
Q Consensus       385 l~~L~~L~Ls~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~n~l~  449 (1077)
                      ++++..+-+..|.+...-....+..++.+--|+|+.+++..-...+++..++.|..+.++.+.+.
T Consensus       198 Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~  262 (418)
T KOG2982|consen  198 FPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLS  262 (418)
T ss_pred             cccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccc
Confidence            34555555555555433333444555555566666666555555555666666666666666554

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.05  E-value=1.1e-06  Score=87.41  Aligned_cols=238  Identities=20%  Similarity=0.205  Sum_probs=129.2

Q ss_pred             hhccCCCCCcEEeCCCCCCCchhhHH----hhccCCCCEEeCCCCcCCCccCC-------cchhhccCCCCCcEEECCCC
Q 001439          123 ERLSRLSNLKMLNLVGNLFNNSILSS----LARLSSLTSLDLSANRLKGSIDI-------KGPKRLSRLNNLKVFDLSGN  191 (1077)
Q Consensus       123 ~~l~~l~~L~~L~Ls~n~l~~~~~~~----l~~l~~L~~L~Ls~n~l~~~~~~-------~~~~~l~~l~~L~~L~Ls~n  191 (1077)
                      +.+..+..++.++||+|.|..+-...    |.+-.+|+..+++.-. +|..-.       .+.+.+.+|++|+..+||.|
T Consensus        24 eel~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~f-tgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDN  102 (388)
T COG5238          24 EELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAF-TGRDKDELYSNLVMLLKALLKCPRLQKVDLSDN  102 (388)
T ss_pred             HHHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhh-hcccHHHHHHHHHHHHHHHhcCCcceeeecccc
Confidence            34566888999999999987654444    4455788888887643 221111       11245677888888888888


Q ss_pred             CCCchhhHh----hhccCCCcEEEcCCCCCCCCcChhhhhcccccceeecCCCcCCCCchhhhccCCcccceeeeccccc
Q 001439          192 LFNNSILSS----LARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGI  267 (1077)
Q Consensus       192 ~i~~~~~~~----l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~l~~~~~  267 (1077)
                      -+....|..    +++-+.|++|.+++|.+. .+....+++                     ++..+             
T Consensus       103 Afg~~~~e~L~d~is~~t~l~HL~l~NnGlG-p~aG~rigk---------------------al~~l-------------  147 (388)
T COG5238         103 AFGSEFPEELGDLISSSTDLVHLKLNNNGLG-PIAGGRIGK---------------------ALFHL-------------  147 (388)
T ss_pred             ccCcccchHHHHHHhcCCCceeEEeecCCCC-ccchhHHHH---------------------HHHHH-------------
Confidence            776655544    344567777777777654 222111110                     00000             


Q ss_pred             CCcchhhhhcCCCCCcceeccccCccccccccccc-CCccCccccEEecchhHhhhhhh---hHHHHhccCCCCcEEecc
Q 001439          268 RDGSKLLQSMGSFPSLNTLDLSYNNFTETVTTTTQ-GFPHFKSLKELYMDDARIALNTS---FLQIIGESMPSIQYLSLS  343 (1077)
Q Consensus       268 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~-~l~~l~~L~~L~L~~n~~~~~~~---~~~~l~~~l~~L~~L~L~  343 (1077)
                          .......+.|.|++.....|+...++..... .+....+|+.+.+..|.|.-.|.   ....+.. +.+|+.|++.
T Consensus       148 ----a~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y-~~~LevLDlq  222 (388)
T COG5238         148 ----AYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFY-SHSLEVLDLQ  222 (388)
T ss_pred             ----HHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHH-hCcceeeecc
Confidence                0001123334444444444444333222111 12223456666666664322211   1112222 6888888988


Q ss_pred             cCcCCCCccc-ccccccCCCCccEEEccCCcCCCCchhhh------cCCCCCcEEecCCCccccc
Q 001439          344 NSSVSNNSRT-LDQGLCPLVHLQELHMADNDLRGSLPWCL------ANMTSLRILDVSSNQLIGS  401 (1077)
Q Consensus       344 ~~~~~~~~~~-~~~~l~~l~~L~~L~L~~n~l~~~~p~~l------~~l~~L~~L~Ls~n~l~~~  401 (1077)
                      +|.++..... +...++..+.|++|.+.+|-++.....++      ...++|..|-..+|...+.
T Consensus       223 DNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~  287 (388)
T COG5238         223 DNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGG  287 (388)
T ss_pred             ccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCc
Confidence            8887654322 22245666778888888887765443332      1356777777777765543

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.81  E-value=4.7e-05  Score=83.36  Aligned_cols=54  Identities=13%  Similarity=0.108  Sum_probs=26.1

Q ss_pred             cccccEeccccccCCCCCCccccCCCCCCEEEccCccccccCchhccCCCCCCEEECcCC
Q 001439          754 CLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNN  813 (1077)
Q Consensus       754 ~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N  813 (1077)
                      +..++.|++++|.++ .+|.   -.++|+.|.++++.-...+|..+  .++|+.|++++|
T Consensus        51 ~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~C  104 (426)
T PRK15386         51 ARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHC  104 (426)
T ss_pred             hcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCc
Confidence            455555666555554 3331   12345566665533323444433  235566666655

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.75  E-value=2.3e-05  Score=93.59  Aligned_cols=107  Identities=27%  Similarity=0.400  Sum_probs=51.0

Q ss_pred             CCCcEEeCCCCCC-CchhhHHhhc-cCCCCEEeCCCCcCCCccCCcchhhccCCCCCcEEECCCCCCCchhhHhhhccCC
Q 001439          129 SNLKMLNLVGNLF-NNSILSSLAR-LSSLTSLDLSANRLKGSIDIKGPKRLSRLNNLKVFDLSGNLFNNSILSSLARLSS  206 (1077)
Q Consensus       129 ~~L~~L~Ls~n~l-~~~~~~~l~~-l~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~  206 (1077)
                      .+|++||+++... ....|..++. ||+|+.|.+++-.+...   .......++++|..||+|+++++..  .+++++++
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~---dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~Lkn  196 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDND---DFSQLCASFPNLRSLDISGTNISNL--SGISRLKN  196 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecch---hHHHHhhccCccceeecCCCCccCc--HHHhcccc
Confidence            4555555555432 2334444444 45555555555443321   0012234455555555555555432  44555555


Q ss_pred             CcEEEcCCCCCCCCcChhhhhcccccceeecCCC
Q 001439          207 LRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYN  240 (1077)
Q Consensus       207 L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n  240 (1077)
                      |+.|.+.+-.+...-....+-+|++|+.||+|..
T Consensus       197 Lq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~  230 (699)
T KOG3665|consen  197 LQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRD  230 (699)
T ss_pred             HHHHhccCCCCCchhhHHHHhcccCCCeeecccc
Confidence            5555555544443333344444555555555544

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.74  E-value=2.6e-05  Score=93.28  Aligned_cols=154  Identities=23%  Similarity=0.260  Sum_probs=106.7

Q ss_pred             cCCcEeeCCCCCCCccccchhhhhccCCCCCcEEeCCCCCCCc-hhhHHhhccCCCCEEeCCCCcCCCccCCcchhhccC
Q 001439          101 QQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNN-SILSSLARLSSLTSLDLSANRLKGSIDIKGPKRLSR  179 (1077)
Q Consensus       101 ~~L~~L~Ls~n~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~-~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~  179 (1077)
                      .+|++||+++.........  .+.-..|++|+.|.+++-.+.. .......++++|+.||+|+++++..      ..+++
T Consensus       122 ~nL~~LdI~G~~~~s~~W~--~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl------~GIS~  193 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWP--KKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL------SGISR  193 (699)
T ss_pred             HhhhhcCccccchhhccHH--HHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc------HHHhc
Confidence            5789999988654322111  1112458999999999877743 3344455689999999999988743      58899


Q ss_pred             CCCCcEEECCCCCCCc-hhhHhhhccCCCcEEEcCCCCCCCCc--C---hhhhhcccccceeecCCCcCCCCchhhhccC
Q 001439          180 LNNLKVFDLSGNLFNN-SILSSLARLSSLRSLLLYDNRLEGSI--D---VKEFDSLSNLEELDMSYNEIDNFEVPQACSG  253 (1077)
Q Consensus       180 l~~L~~L~Ls~n~i~~-~~~~~l~~l~~L~~L~L~~n~l~~~~--~---~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~  253 (1077)
                      +++|++|.+.+-.+.. .....+.+|++|+.||+|.......-  .   .+.-..+|+|+.||.|++.+...-+...+..
T Consensus       194 LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~s  273 (699)
T KOG3665|consen  194 LKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNS  273 (699)
T ss_pred             cccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHh
Confidence            9999999988877664 44567888999999999987754221  1   0112347899999999887776555555556


Q ss_pred             Ccccceeee
Q 001439          254 LRKLSYLHL  262 (1077)
Q Consensus       254 l~~L~~L~l  262 (1077)
                      .++|+.+..
T Consensus       274 H~~L~~i~~  282 (699)
T KOG3665|consen  274 HPNLQQIAA  282 (699)
T ss_pred             CccHhhhhh
Confidence            666665543

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.71  E-value=2.3e-05  Score=56.78  Aligned_cols=36  Identities=42%  Similarity=0.729  Sum_probs=16.3

Q ss_pred             cCceeeCcCCcCCCCCCccccCCCCCCeEeCCCCcCc
Q 001439          905 KIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLS  941 (1077)
Q Consensus       905 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~  941 (1077)
                      +|++|++++|+|+ .+|..+++|++|+.|++++|+++
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            3444555555554 23334455555555555555444

...

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.65  E-value=3.9e-06  Score=74.79  Aligned_cols=85  Identities=24%  Similarity=0.348  Sum_probs=52.0

Q ss_pred             CCccEEEcCCCcccccCCchhhccCCCCcEEEcccCcccccCCccCCCCCCCCEEEccCCcCCCCcchHhhhcCCcCcEE
Q 001439          537 KQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSL  616 (1077)
Q Consensus       537 ~~L~~L~l~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L  616 (1077)
                      ..|+..++++|.+. .+|..+...++.++.|++++|.++ .+|..+..++.|+.|+++.|.+. ..|..++. +.++..|
T Consensus        53 ~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~-L~~l~~L  128 (177)
T KOG4579|consen   53 YELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAP-LIKLDML  128 (177)
T ss_pred             ceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHH-HHhHHHh
Confidence            44556666666665 566655555566666777766666 45555666666667777666665 55555543 5555555


Q ss_pred             EcccccCCC
Q 001439          617 ALSNNNLEG  625 (1077)
Q Consensus       617 ~L~~n~l~~  625 (1077)
                      +..+|.+..
T Consensus       129 ds~~na~~e  137 (177)
T KOG4579|consen  129 DSPENARAE  137 (177)
T ss_pred             cCCCCcccc
Confidence            555555443

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.57  E-value=8.6e-05  Score=71.31  Aligned_cols=87  Identities=24%  Similarity=0.320  Sum_probs=64.9

Q ss_pred             cCCCCEEeCCCCcCCCccCCcchhhccCCCCCcEEECCCCCCCchhhHhhhccCCCcEEEcCCCCCCCCcChhhhhcccc
Q 001439          152 LSSLTSLDLSANRLKGSIDIKGPKRLSRLNNLKVFDLSGNLFNNSILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSN  231 (1077)
Q Consensus       152 l~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~  231 (1077)
                      +.+...+||++|.+...      ..+..++.|.+|.|..|+|+...|.--.-+++|+.|.+.+|.+....+...+..+++
T Consensus        41 ~d~~d~iDLtdNdl~~l------~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~  114 (233)
T KOG1644|consen   41 LDQFDAIDLTDNDLRKL------DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPK  114 (233)
T ss_pred             ccccceecccccchhhc------ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCc
Confidence            45677888888887542      367788888888898888887666655566788888888888875555666777778


Q ss_pred             cceeecCCCcCCC
Q 001439          232 LEELDMSYNEIDN  244 (1077)
Q Consensus       232 L~~L~Ls~n~i~~  244 (1077)
                      |++|.+-+|.++.
T Consensus       115 L~~Ltll~Npv~~  127 (233)
T KOG1644|consen  115 LEYLTLLGNPVEH  127 (233)
T ss_pred             cceeeecCCchhc
Confidence            8888877776654

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.53  E-value=5.6e-05  Score=54.76  Aligned_cols=38  Identities=34%  Similarity=0.611  Sum_probs=32.9

Q ss_pred             CCCCeEeCCCCcCcccCCCcccCCCCcceEEcccccccc
Q 001439          928 RNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSG  966 (1077)
Q Consensus       928 ~~L~~LdLs~N~l~~~ip~~l~~l~~L~~l~ls~N~l~g  966 (1077)
                      ++|++|++++|+|+ .+|..+.++++|++|++++|+++.
T Consensus         1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~   38 (44)
T PF12799_consen    1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISD   38 (44)
T ss_dssp             TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSB
T ss_pred             CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCC
Confidence            57999999999999 678789999999999999999883

...

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.45  E-value=0.0005  Score=75.50  Aligned_cols=32  Identities=28%  Similarity=0.266  Sum_probs=15.1

Q ss_pred             CCCcEEEcccCcCCCCCCccccCCCCccEEECCCC
Q 001439          659 SSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKN  693 (1077)
Q Consensus       659 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n  693 (1077)
                      ++|++|++++|... ..|..+.  .+|+.|+++.+
T Consensus       156 sSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n  187 (426)
T PRK15386        156 PSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIE  187 (426)
T ss_pred             CcccEEEecCCCcc-cCccccc--ccCcEEEeccc
Confidence            45566666555543 2333222  34555555544

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.44  E-value=0.00032  Score=66.02  Aligned_cols=87  Identities=24%  Similarity=0.219  Sum_probs=35.5

Q ss_pred             CchhhccCCCCcEEEcccCcccccCCccCCCCCCCCEEEccCCcCCCCcchHhhhcCCcCcEEEcccccCCCcccccccC
Q 001439          554 PLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFN  633 (1077)
Q Consensus       554 ~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  633 (1077)
                      +...+..+++|+.+.+.. .+..+....|.++++|+.+.+.++ +. .++...|.++++++.+.+.+ .+.......|..
T Consensus         4 ~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~   79 (129)
T PF13306_consen    4 GNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITFPN-NLKSIGDNAFSN   79 (129)
T ss_dssp             -TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT
T ss_pred             CHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-cc-ccceeeeecccccccccccc-cccccccccccc
Confidence            334444455566666553 344444555666656666666553 43 55555555555555555543 333223333334


Q ss_pred             CCccCeeeccC
Q 001439          634 LTNLIWLQLEG  644 (1077)
Q Consensus       634 l~~L~~L~L~~  644 (1077)
                      +++|+.+++..
T Consensus        80 ~~~l~~i~~~~   90 (129)
T PF13306_consen   80 CTNLKNIDIPS   90 (129)
T ss_dssp             -TTECEEEETT
T ss_pred             cccccccccCc
Confidence            44444444433

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.37  E-value=0.00037  Score=65.58  Aligned_cols=124  Identities=21%  Similarity=0.257  Sum_probs=64.8

Q ss_pred             CccCCCCCCCCEEEccCCcCCCCcchHhhhcCCcCcEEEcccccCCCcccccccCCCccCeeeccCccccccCCccccCC
Q 001439          579 PSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKC  658 (1077)
Q Consensus       579 p~~~~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l  658 (1077)
                      ...|.++++|+.+.+.. .+. .++...|.++.+|+.+.+.++ +.......|.++++++.+.+.+ .+.......|..+
T Consensus         5 ~~~F~~~~~l~~i~~~~-~~~-~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~   80 (129)
T PF13306_consen    5 NNAFYNCSNLESITFPN-TIK-KIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNC   80 (129)
T ss_dssp             TTTTTT-TT--EEEETS-T---EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-
T ss_pred             HHHHhCCCCCCEEEECC-Cee-EeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccc
Confidence            45678888888888875 565 788888888888888888774 6666666677777788888765 4443445567777


Q ss_pred             CCCcEEEcccCcCCCCCCccccCCCCccEEECCCCcccCCCCccccCCCCC
Q 001439          659 SSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRIL  709 (1077)
Q Consensus       659 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  709 (1077)
                      ++|+.+++..+ +.......|.++ .++.+.+.. .+.......|.++++|
T Consensus        81 ~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l  128 (129)
T PF13306_consen   81 TNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL  128 (129)
T ss_dssp             TTECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred             ccccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence            77877777654 443445556665 777777665 4443445566666555

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.25  E-value=0.00045  Score=66.48  Aligned_cols=109  Identities=18%  Similarity=0.218  Sum_probs=79.0

Q ss_pred             CCCCcEEecccCcCCCCcccccccccCCCCccEEEccCCcCCCCchhhhcCCCCCcEEecCCCccccccCCccccCCCCc
Q 001439          334 MPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSI  413 (1077)
Q Consensus       334 l~~L~~L~L~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~i~~~~l~~l~~L  413 (1077)
                      ......++|++|.+....     .+..+++|..|.+.+|.|+.+-|.--.-+++|..|.+.+|.+..--....+..+++|
T Consensus        41 ~d~~d~iDLtdNdl~~l~-----~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L  115 (233)
T KOG1644|consen   41 LDQFDAIDLTDNDLRKLD-----NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKL  115 (233)
T ss_pred             ccccceecccccchhhcc-----cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCcc
Confidence            456677777777664332     456678888888988888877666555677888899998887654445677888899


Q ss_pred             ceeecCCCeeeeecC--cccccCCCCccEEecCCCc
Q 001439          414 EDLILSDNHFQIPIS--LEPLFNHSRLKIFDAENNE  447 (1077)
Q Consensus       414 ~~L~L~~n~l~~~~~--~~~~~~l~~L~~l~l~~n~  447 (1077)
                      ++|.+-+|+.+....  ...+..+++|+++|++.-.
T Consensus       116 ~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt  151 (233)
T KOG1644|consen  116 EYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT  151 (233)
T ss_pred             ceeeecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence            999998887763322  2245678889988887654

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.17  E-value=0.00028  Score=83.78  Aligned_cols=181  Identities=25%  Similarity=0.201  Sum_probs=88.4

Q ss_pred             cCCCCEEeCCCCcCCCccCCcchhhccCCCCCcEEECCCC-CCCch----hhHhhhccCCCcEEEcCCCCCCCCcChhhh
Q 001439          152 LSSLTSLDLSANRLKGSIDIKGPKRLSRLNNLKVFDLSGN-LFNNS----ILSSLARLSSLRSLLLYDNRLEGSIDVKEF  226 (1077)
Q Consensus       152 l~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n-~i~~~----~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l  226 (1077)
                      ++.|+.|.+..+.-....  ........++.|+.|+++++ .....    .......+.+|+.|+++.+...+......+
T Consensus       187 ~~~L~~l~l~~~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l  264 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITDD--SLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSAL  264 (482)
T ss_pred             CchhhHhhhcccccCChh--hHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHH
Confidence            455555555555321110  01123445566666666552 11110    112233445666666666652223333333


Q ss_pred             hc-ccccceeecCCCc-CCCCchhhhccCCcccceeeecccccCCcchhhhhcCCCCCcceeccccCcccccccccccCC
Q 001439          227 DS-LSNLEELDMSYNE-IDNFEVPQACSGLRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTETVTTTTQGF  304 (1077)
Q Consensus       227 ~~-l~~L~~L~Ls~n~-i~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l  304 (1077)
                      .. +++|++|.+..+. +++..+......++.|++|++.++.......+......+++++.+.+....            
T Consensus       265 ~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~------------  332 (482)
T KOG1947|consen  265 ASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLN------------  332 (482)
T ss_pred             HhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcC------------
Confidence            33 5666666655555 555555566666666777776666555444444445556666665543321            


Q ss_pred             ccCccccEEecchhHhhhhhhhHHHHhccCCCCcEEecccCcC
Q 001439          305 PHFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSV  347 (1077)
Q Consensus       305 ~~l~~L~~L~L~~n~~~~~~~~~~~l~~~l~~L~~L~L~~~~~  347 (1077)
                       .+..++.+.+..................+++++.+.+..+..
T Consensus       333 -~c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~  374 (482)
T KOG1947|consen  333 -GCPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGI  374 (482)
T ss_pred             -CCccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhc
Confidence             133455555444311000123333344477777777777663

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.81  E-value=0.00065  Score=68.57  Aligned_cols=66  Identities=23%  Similarity=0.354  Sum_probs=29.1

Q ss_pred             cCCCCCcEEECCCC--CCCchhhHhhhccCCCcEEEcCCCCCCCCcChhhhhcccccceeecCCCcCC
Q 001439          178 SRLNNLKVFDLSGN--LFNNSILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEID  243 (1077)
Q Consensus       178 ~~l~~L~~L~Ls~n--~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~i~  243 (1077)
                      -.+++|++|++|.|  .+.+.++....++++|++|++++|++.-.-....+..+.+|..||+..|..+
T Consensus        62 P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~  129 (260)
T KOG2739|consen   62 PKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVT  129 (260)
T ss_pred             CCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCcc
Confidence            33444444444444  3333333333333444444444444432222334445555555555555443

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.76  E-value=0.00092  Score=67.51  Aligned_cols=59  Identities=39%  Similarity=0.466  Sum_probs=24.4

Q ss_pred             CCCCcEEECCCCCCCc-hhhHhhhccCCCcEEEcCCCCCCCCcC--hhhhhcccccceeecC
Q 001439          180 LNNLKVFDLSGNLFNN-SILSSLARLSSLRSLLLYDNRLEGSID--VKEFDSLSNLEELDMS  238 (1077)
Q Consensus       180 l~~L~~L~Ls~n~i~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~l~~L~~L~Ls  238 (1077)
                      +++|++|++++|++.. .-...+..+.+|..|+++.|..+..-.  ...|.-+++|+.||-.
T Consensus        90 ~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~  151 (260)
T KOG2739|consen   90 APNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGC  151 (260)
T ss_pred             CCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHHHhhhhcccccc
Confidence            3444444444444432 111123334444455555554432111  1234445555555543

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.71  E-value=0.00039  Score=82.55  Aligned_cols=117  Identities=22%  Similarity=0.123  Sum_probs=78.9

Q ss_pred             cCCCCCcEEECCCCCCCch--hhHhhhccCCCcEEEcCCC-CCCCCcC---hhhhhcccccceeecCCCc-CCCCchhhh
Q 001439          178 SRLNNLKVFDLSGNLFNNS--ILSSLARLSSLRSLLLYDN-RLEGSID---VKEFDSLSNLEELDMSYNE-IDNFEVPQA  250 (1077)
Q Consensus       178 ~~l~~L~~L~Ls~n~i~~~--~~~~l~~l~~L~~L~L~~n-~l~~~~~---~~~l~~l~~L~~L~Ls~n~-i~~~~~~~~  250 (1077)
                      ..++.|+.|.+.++.-...  .-.....++.|+.|+++++ ......+   ......+++|++|+++++. +++..+...
T Consensus       185 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l  264 (482)
T KOG1947|consen  185 SSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSAL  264 (482)
T ss_pred             hhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHH
Confidence            4478899998888743322  3455677889999999873 2211111   2334456888899998887 777666666


Q ss_pred             ccCCcccceeeecccccCCcchhhhhcCCCCCcceeccccCccc
Q 001439          251 CSGLRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFT  294 (1077)
Q Consensus       251 ~~~l~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~  294 (1077)
                      ...+++|+.|.+..+...+...+......++.|++|+++++...
T Consensus       265 ~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~  308 (482)
T KOG1947|consen  265 ASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL  308 (482)
T ss_pred             HhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence            66688888888666665455555666667777888887776554

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.40  E-value=0.00035  Score=70.29  Aligned_cols=82  Identities=24%  Similarity=0.303  Sum_probs=43.6

Q ss_pred             cCCCCEEeCCCCcCCCccCCcchhhccCCCCCcEEECCCCCCCchhhHhhhccCCCcEEEcCCCCCCCCcChhhhhcccc
Q 001439          152 LSSLTSLDLSANRLKGSIDIKGPKRLSRLNNLKVFDLSGNLFNNSILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSN  231 (1077)
Q Consensus       152 l~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~  231 (1077)
                      +.+.+.|++-+|.+.+.      ....+++.|++|.||-|+|+.  ...+..|++|++|+|..|.|...-....+.++++
T Consensus        18 l~~vkKLNcwg~~L~DI------sic~kMp~lEVLsLSvNkIss--L~pl~rCtrLkElYLRkN~I~sldEL~YLknlps   89 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDI------SICEKMPLLEVLSLSVNKISS--LAPLQRCTRLKELYLRKNCIESLDELEYLKNLPS   89 (388)
T ss_pred             HHHhhhhcccCCCccHH------HHHHhcccceeEEeecccccc--chhHHHHHHHHHHHHHhcccccHHHHHHHhcCch
Confidence            34445555555555432      233455666666666666654  2335556666666666666553333344555566


Q ss_pred             cceeecCCCc
Q 001439          232 LEELDMSYNE  241 (1077)
Q Consensus       232 L~~L~Ls~n~  241 (1077)
                      |+.|.|..|.
T Consensus        90 Lr~LWL~ENP   99 (388)
T KOG2123|consen   90 LRTLWLDENP   99 (388)
T ss_pred             hhhHhhccCC
Confidence            6666665553

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.29  E-value=0.00061  Score=68.64  Aligned_cols=103  Identities=21%  Similarity=0.263  Sum_probs=80.3

Q ss_pred             CCCCcEEECCCCCCCchhhHhhhccCCCcEEEcCCCCCCCCcChhhhhcccccceeecCCCcCCCCchhhhccCCcccce
Q 001439          180 LNNLKVFDLSGNLFNNSILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSY  259 (1077)
Q Consensus       180 l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~  259 (1077)
                      +.+.+.|++-+|.+.+  .....+++.|+.|.|+-|.|+   ....+..+++|++|.|..|.|.++....-+.++++|+.
T Consensus        18 l~~vkKLNcwg~~L~D--Isic~kMp~lEVLsLSvNkIs---sL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~   92 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDD--ISICEKMPLLEVLSLSVNKIS---SLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRT   92 (388)
T ss_pred             HHHhhhhcccCCCccH--HHHHHhcccceeEEeeccccc---cchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhh
Confidence            5577889999998876  345678999999999999987   34678899999999999999999888888899999999


Q ss_pred             eeecccccCCcc---hhhhhcCCCCCcceec
Q 001439          260 LHLLRVGIRDGS---KLLQSMGSFPSLNTLD  287 (1077)
Q Consensus       260 L~l~~~~~~~~~---~~~~~l~~~~~L~~L~  287 (1077)
                      |-+.+|......   .-...+.-+|+|++||
T Consensus        93 LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   93 LWLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             HhhccCCcccccchhHHHHHHHHcccchhcc
Confidence            988887665321   1223445566666664

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=95.93  E-value=0.00042  Score=79.39  Aligned_cols=143  Identities=26%  Similarity=0.245  Sum_probs=94.6

Q ss_pred             CcEeeCCCCCCCccccchhhhhccCCCCCcEEeCCCCCCCchhhHHhhc----c-CCCCEEeCCCCcCCCccCCcchhhc
Q 001439          103 LESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILSSLAR----L-SSLTSLDLSANRLKGSIDIKGPKRL  177 (1077)
Q Consensus       103 L~~L~Ls~n~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~----l-~~L~~L~Ls~n~l~~~~~~~~~~~l  177 (1077)
                      +..|.|.+|.+...........+....+|..|++++|.+.+.--..+.+    . ..|++|++..|.+++......++.+
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L  168 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL  168 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence            7788888888877666666667788888888888888887554444433    2 4577788888887766555555677


Q ss_pred             cCCCCCcEEECCCCCCCc----hhhHhhh----ccCCCcEEEcCCCCCCCCcC---hhhhhcccc-cceeecCCCcCCCC
Q 001439          178 SRLNNLKVFDLSGNLFNN----SILSSLA----RLSSLRSLLLYDNRLEGSID---VKEFDSLSN-LEELDMSYNEIDNF  245 (1077)
Q Consensus       178 ~~l~~L~~L~Ls~n~i~~----~~~~~l~----~l~~L~~L~L~~n~l~~~~~---~~~l~~l~~-L~~L~Ls~n~i~~~  245 (1077)
                      .....++.+|++.|.+..    .++..+.    ...++++|.+.+|.++...-   ...+...+. +.+|++..|.+.+.
T Consensus       169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~  248 (478)
T KOG4308|consen  169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV  248 (478)
T ss_pred             hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence            778888888888887642    2233333    35677888888877652111   122334444 66677777776654

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.30  E-value=0.0065  Score=36.43  Aligned_cols=19  Identities=47%  Similarity=0.641  Sum_probs=9.2

Q ss_pred             CCeEeCCCCcCcccCCCccc
Q 001439          930 IESLDLSYNKLSWKIPYQLV  949 (1077)
Q Consensus       930 L~~LdLs~N~l~~~ip~~l~  949 (1077)
                      |+.|||++|+|+ .+|.+|+
T Consensus         2 L~~Ldls~n~l~-~ip~~~~   20 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSFS   20 (22)
T ss_dssp             ESEEEETSSEES-EEGTTTT
T ss_pred             ccEEECCCCcCE-eCChhhc
Confidence            445555555555 4444433

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.08  E-value=0.0062  Score=36.54  Aligned_cols=20  Identities=60%  Similarity=0.908  Sum_probs=10.6

Q ss_pred             CceeeCcCCcCCCCCCccccC
Q 001439          906 IQTLNLSHNNLAGPIPSTFSN  926 (1077)
Q Consensus       906 L~~L~Ls~N~l~~~~p~~~~~  926 (1077)
                      |++|||++|+|+ .+|..|++
T Consensus         2 L~~Ldls~n~l~-~ip~~~~~   21 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSFSN   21 (22)
T ss_dssp             ESEEEETSSEES-EEGTTTTT
T ss_pred             ccEEECCCCcCE-eCChhhcC
Confidence            455555555555 45554443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=94.33  E-value=0.0033  Score=72.22  Aligned_cols=194  Identities=27%  Similarity=0.226  Sum_probs=125.0

Q ss_pred             eEEEEcCCcccCc-cccccccccccCcCCcEeeCCCCCCCccccchhhhhccCC-CCCcEEeCCCCCCCc----hhhHHh
Q 001439           76 VVVLDLSQTHRGE-YWYLNASLFTPFQQLESLDLRDNDIAGCVENEGLERLSRL-SNLKMLNLVGNLFNN----SILSSL  149 (1077)
Q Consensus        76 v~~l~L~~~~~~~-~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~l-~~L~~L~Ls~n~l~~----~~~~~l  149 (1077)
                      ...++|.++.+.. ....-...+.....|..|++++|.+.+.......+.+... +.|++|++..|.+++    .+...+
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L  168 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL  168 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence            4455666663322 1223344567788999999999999854444333444444 678889999988765    356677


Q ss_pred             hccCCCCEEeCCCCcCCCccCCcchhhc----cCCCCCcEEECCCCCCCchhh----HhhhccCC-CcEEEcCCCCCCCC
Q 001439          150 ARLSSLTSLDLSANRLKGSIDIKGPKRL----SRLNNLKVFDLSGNLFNNSIL----SSLARLSS-LRSLLLYDNRLEGS  220 (1077)
Q Consensus       150 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~l----~~l~~L~~L~Ls~n~i~~~~~----~~l~~l~~-L~~L~L~~n~l~~~  220 (1077)
                      ....+++.+|++.|.+....-...+..+    ....++++|++++|.++....    ..+...+. ++.|++..|.+...
T Consensus       169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~  248 (478)
T KOG4308|consen  169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV  248 (478)
T ss_pred             hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence            7789999999999987422111122333    357889999999998875332    23445555 77899999987632


Q ss_pred             cC---hhhhhcc-cccceeecCCCcCCCCch---hhhccCCcccceeeecccccCC
Q 001439          221 ID---VKEFDSL-SNLEELDMSYNEIDNFEV---PQACSGLRKLSYLHLLRVGIRD  269 (1077)
Q Consensus       221 ~~---~~~l~~l-~~L~~L~Ls~n~i~~~~~---~~~~~~l~~L~~L~l~~~~~~~  269 (1077)
                      .-   ...+..+ ..+++++++.|.++....   .+.+..++.++.+.+..+.+..
T Consensus       249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~  304 (478)
T KOG4308|consen  249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD  304 (478)
T ss_pred             HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence            11   1123334 577999999998876543   3344455566666666666554

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.73  E-value=0.039  Score=53.68  Aligned_cols=81  Identities=28%  Similarity=0.347  Sum_probs=49.3

Q ss_pred             CcEEeCCCCCCCchhhHHhhccCCCCEEeCCCCcCCCccCCcchhhccC-CCCCcEEECCCC-CCCchhhHhhhccCCCc
Q 001439          131 LKMLNLVGNLFNNSILSSLARLSSLTSLDLSANRLKGSIDIKGPKRLSR-LNNLKVFDLSGN-LFNNSILSSLARLSSLR  208 (1077)
Q Consensus       131 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~-l~~L~~L~Ls~n-~i~~~~~~~l~~l~~L~  208 (1077)
                      ++.+|-+++.|..+.-+.+.+++.++.|.+.+|.-.+.--   .+.+++ .++|+.|++++| .|++.....+.++++|+
T Consensus       103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~---L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr  179 (221)
T KOG3864|consen  103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWC---LERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLR  179 (221)
T ss_pred             EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHH---HHHhcccccchheeeccCCCeechhHHHHHHHhhhhH
Confidence            4555556655555555666666666666666665332211   123333 467888888877 57766677777777777


Q ss_pred             EEEcCC
Q 001439          209 SLLLYD  214 (1077)
Q Consensus       209 ~L~L~~  214 (1077)
                      .|.+++
T Consensus       180 ~L~l~~  185 (221)
T KOG3864|consen  180 RLHLYD  185 (221)
T ss_pred             HHHhcC
Confidence            776654

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=91.23  E-value=0.0088  Score=58.95  Aligned_cols=82  Identities=22%  Similarity=0.225  Sum_probs=72.3

Q ss_pred             CCceEECCCCcCCCCCcccccccccCceeeCcCCcCCCCCCccccCCCCCCeEeCCCCcCcccCCCcccCCCCcceEEcc
Q 001439          881 LLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVA  960 (1077)
Q Consensus       881 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~l~ls  960 (1077)
                      ..+.||++.|++. .....|.-++.|..||+|.|.+. ..|..++.+..+..+++..|.++ ..|-++...+.++++++-
T Consensus        43 r~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k  119 (326)
T KOG0473|consen   43 RVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQK  119 (326)
T ss_pred             eeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhc
Confidence            4578999999987 34567888899999999999998 78999999999999999999998 789999999999999999


Q ss_pred             ccccc
Q 001439          961 YNNLS  965 (1077)
Q Consensus       961 ~N~l~  965 (1077)
                      .|.+.
T Consensus       120 ~~~~~  124 (326)
T KOG0473|consen  120 KTEFF  124 (326)
T ss_pred             cCcch
Confidence            99864

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.34  E-value=0.1  Score=50.97  Aligned_cols=82  Identities=23%  Similarity=0.233  Sum_probs=53.2

Q ss_pred             CCCcEEECCCCCCCchhhHhhhccCCCcEEEcCCCCCCCCcChhhhhc-ccccceeecCCC-cCCCCchhhhccCCcccc
Q 001439          181 NNLKVFDLSGNLFNNSILSSLARLSSLRSLLLYDNRLEGSIDVKEFDS-LSNLEELDMSYN-EIDNFEVPQACSGLRKLS  258 (1077)
Q Consensus       181 ~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~-l~~L~~L~Ls~n-~i~~~~~~~~~~~l~~L~  258 (1077)
                      ..++.+|-+++.|..+..+.+.+++.++.|.+.+|.-.+....+.+++ .++|+.|++++| +|++. ....+..+++|+
T Consensus       101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~-GL~~L~~lknLr  179 (221)
T KOG3864|consen  101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDG-GLACLLKLKNLR  179 (221)
T ss_pred             ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechh-HHHHHHHhhhhH
Confidence            456778888888877777778888888888888877544433334443 377888888877 45542 234455555555


Q ss_pred             eeeec
Q 001439          259 YLHLL  263 (1077)
Q Consensus       259 ~L~l~  263 (1077)
                      .|.+.
T Consensus       180 ~L~l~  184 (221)
T KOG3864|consen  180 RLHLY  184 (221)
T ss_pred             HHHhc
Confidence            55543

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=90.16  E-value=0.16  Score=28.17  Aligned_cols=13  Identities=54%  Similarity=0.871  Sum_probs=4.7

Q ss_pred             CCCeEeCCCCcCc
Q 001439          929 NIESLDLSYNKLS  941 (1077)
Q Consensus       929 ~L~~LdLs~N~l~  941 (1077)
                      +|+.|+|++|+|+
T Consensus         2 ~L~~L~l~~n~L~   14 (17)
T PF13504_consen    2 NLRTLDLSNNRLT   14 (17)
T ss_dssp             T-SEEEETSS--S
T ss_pred             ccCEEECCCCCCC
Confidence            3444444444443

...

>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]

Probab=88.76  E-value=1.6  Score=48.34  Aligned_cols=60  Identities=23%  Similarity=0.179  Sum_probs=32.0

Q ss_pred             CccEEEccCCcCCCCch---hhhcCCCCCcEEecCCCccccc---cCCccccCCCCcceeecCCCe
Q 001439          363 HLQELHMADNDLRGSLP---WCLANMTSLRILDVSSNQLIGS---ISSSPLIHLTSIEDLILSDNH  422 (1077)
Q Consensus       363 ~L~~L~L~~n~l~~~~p---~~l~~l~~L~~L~Ls~n~l~~~---i~~~~l~~l~~L~~L~L~~n~  422 (1077)
                      -+.++.++.|.......   ..+..-+.+..|++++|.....   +.+.....-..+..+..+.|.
T Consensus       414 ~l~el~ls~~~lka~l~s~in~l~stqtl~kldisgn~mgd~gap~lpkalq~n~rlr~ipds~n~  479 (553)
T KOG4242|consen  414 VLAELSLSPGPLKAGLESAINKLLSTQTLAKLDISGNGMGDGGAPPLPKALQSNCRLRPIPDSLNL  479 (553)
T ss_pred             cccCcccCCCcccccHHHHHHhhccCcccccccccCCCcccCCCCcCccccCCCCccCCCCCCCCC
Confidence            36667777776653222   2234456788888888864321   112233333445555555553

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=88.57  E-value=0.34  Score=26.84  Aligned_cols=13  Identities=69%  Similarity=0.787  Sum_probs=5.4

Q ss_pred             CCCEEEccCCcCC
Q 001439          587 FLQFLDLSNNQLT  599 (1077)
Q Consensus       587 ~L~~L~Ls~n~l~  599 (1077)
                      +|++|++++|+++
T Consensus         2 ~L~~L~l~~n~L~   14 (17)
T PF13504_consen    2 NLRTLDLSNNRLT   14 (17)
T ss_dssp             T-SEEEETSS--S
T ss_pred             ccCEEECCCCCCC
Confidence            4555555555554

...

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=86.95  E-value=0.61  Score=29.18  Aligned_cols=22  Identities=45%  Similarity=0.551  Sum_probs=15.9

Q ss_pred             CCCCCEEEccCCcCCCCcchHhh
Q 001439          585 MNFLQFLDLSNNQLTGEIPEHLA  607 (1077)
Q Consensus       585 l~~L~~L~Ls~n~l~~~ip~~~~  607 (1077)
                      +++|++|++++|+++ .+|...|
T Consensus         1 L~~L~~L~L~~N~l~-~lp~~~f   22 (26)
T smart00369        1 LPNLRELDLSNNQLS-SLPPGAF   22 (26)
T ss_pred             CCCCCEEECCCCcCC-cCCHHHc
Confidence            356778888888777 7777665

>smart00370 LRR Leucine-rich repeats, outliers

Probab=86.95  E-value=0.61  Score=29.18  Aligned_cols=22  Identities=45%  Similarity=0.551  Sum_probs=15.9

Q ss_pred             CCCCCEEEccCCcCCCCcchHhh
Q 001439          585 MNFLQFLDLSNNQLTGEIPEHLA  607 (1077)
Q Consensus       585 l~~L~~L~Ls~n~l~~~ip~~~~  607 (1077)
                      +++|++|++++|+++ .+|...|
T Consensus         1 L~~L~~L~L~~N~l~-~lp~~~f   22 (26)
T smart00370        1 LPNLRELDLSNNQLS-SLPPGAF   22 (26)
T ss_pred             CCCCCEEECCCCcCC-cCCHHHc
Confidence            356778888888777 7777665

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=86.66  E-value=0.32  Score=29.81  Aligned_cols=21  Identities=38%  Similarity=0.463  Sum_probs=11.3

Q ss_pred             CCCcEEECCCCCCCchhhHhh
Q 001439          181 NNLKVFDLSGNLFNNSILSSL  201 (1077)
Q Consensus       181 ~~L~~L~Ls~n~i~~~~~~~l  201 (1077)
                      ++|++|++++|.+++..+..+
T Consensus         2 ~~L~~L~l~~n~i~~~g~~~l   22 (24)
T PF13516_consen    2 PNLETLDLSNNQITDEGASAL   22 (24)
T ss_dssp             TT-SEEE-TSSBEHHHHHHHH
T ss_pred             CCCCEEEccCCcCCHHHHHHh
Confidence            566666666666665555444

...

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=86.18  E-value=0.029  Score=55.45  Aligned_cols=86  Identities=20%  Similarity=0.198  Sum_probs=53.1

Q ss_pred             ccCcCCcEeeCCCCCCCccccchhhhhccCCCCCcEEeCCCCCCCchhhHHhhccCCCCEEeCCCCcCCCccCCcchhhc
Q 001439           98 TPFQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILSSLARLSSLTSLDLSANRLKGSIDIKGPKRL  177 (1077)
Q Consensus        98 ~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l  177 (1077)
                      ..++..++||++.|++......     ++-++.|..|+++.|.+. ..|..++.+..++++++..|..+. .    |.++
T Consensus        39 ~~~kr~tvld~~s~r~vn~~~n-----~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~~-~----p~s~  107 (326)
T KOG0473|consen   39 ASFKRVTVLDLSSNRLVNLGKN-----FSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHSQ-Q----PKSQ  107 (326)
T ss_pred             hccceeeeehhhhhHHHhhccc-----hHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchhh-C----Cccc
Confidence            3455556666665554332221     445566666777766654 567777777777777777666542 2    3577


Q ss_pred             cCCCCCcEEECCCCCCC
Q 001439          178 SRLNNLKVFDLSGNLFN  194 (1077)
Q Consensus       178 ~~l~~L~~L~Ls~n~i~  194 (1077)
                      ...++++++++-++.+.
T Consensus       108 ~k~~~~k~~e~k~~~~~  124 (326)
T KOG0473|consen  108 KKEPHPKKNEQKKTEFF  124 (326)
T ss_pred             cccCCcchhhhccCcch
Confidence            77777777777777654

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=85.69  E-value=0.59  Score=29.26  Aligned_cols=13  Identities=62%  Similarity=0.825  Sum_probs=6.0

Q ss_pred             CCCeEeCCCCcCc
Q 001439          929 NIESLDLSYNKLS  941 (1077)
Q Consensus       929 ~L~~LdLs~N~l~  941 (1077)
                      +|+.|+|++|+|+
T Consensus         3 ~L~~L~L~~N~l~   15 (26)
T smart00369        3 NLRELDLSNNQLS   15 (26)
T ss_pred             CCCEEECCCCcCC
Confidence            4444444444444

>smart00370 LRR Leucine-rich repeats, outliers

Probab=85.69  E-value=0.59  Score=29.26  Aligned_cols=13  Identities=62%  Similarity=0.825  Sum_probs=6.0

Q ss_pred             CCCeEeCCCCcCc
Q 001439          929 NIESLDLSYNKLS  941 (1077)
Q Consensus       929 ~L~~LdLs~N~l~  941 (1077)
                      +|+.|+|++|+|+
T Consensus         3 ~L~~L~L~~N~l~   15 (26)
T smart00370        3 NLRELDLSNNQLS   15 (26)
T ss_pred             CCCEEECCCCcCC
Confidence            4444444444444

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=85.33  E-value=0.45  Score=29.15  Aligned_cols=21  Identities=33%  Similarity=0.415  Sum_probs=9.7

Q ss_pred             CCCcEEeCCCCCCCchhhHHh
Q 001439          129 SNLKMLNLVGNLFNNSILSSL  149 (1077)
Q Consensus       129 ~~L~~L~Ls~n~l~~~~~~~l  149 (1077)
                      ++|++|+|++|.+++.....|
T Consensus         2 ~~L~~L~l~~n~i~~~g~~~l   22 (24)
T PF13516_consen    2 PNLETLDLSNNQITDEGASAL   22 (24)
T ss_dssp             TT-SEEE-TSSBEHHHHHHHH
T ss_pred             CCCCEEEccCCcCCHHHHHHh
Confidence            445555555555554444444

...

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	1077
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		6e-47
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		7e-47
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		4e-13
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		3e-05

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score =  186 bits (472), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 170/559 (30%), Positives = 254/559 (45%), Gaps = 72/559 (12%)
Query: 483 FLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLL 542
           FL +   L+++ +S  K++ +F +  +   T+L+ L++ ++  VGP  +P    K L+ L
Sbjct: 215 FLGDCSALQHLDISGNKLSGDF-SRAISTCTELKLLNISSNQFVGP--IPPLPLKSLQYL 271
Query: 543 DVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFG------------------- 583
            +++N F G IP  +      LT  ++S N   G++P  FG                   
Sbjct: 272 SLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGEL 331
Query: 584 ------NMNFLQFLDLSNNQLTGEIPEHLAMGCVXXXXXXXXXXXXEGHMF---SRNFNL 634
                  M  L+ LDLS N+ +GE+PE L                  G +     +N   
Sbjct: 332 PMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKN 391
Query: 635 TNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNH 694
           T L  L L+ N F G+IP +LS CS L  L LS N LSG IP  LG+L+ LR + +  N 
Sbjct: 392 T-LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNM 450
Query: 695 IEGPIPLEFCQLRILQILDISDNNISGSLPS-CYDFVCIEQVHLSKNMLHGQLKE--GTF 751
           +EG IP E   ++ L+ L +  N+++G +PS   +   +  + LS N L G++ +  G  
Sbjct: 451 LEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRL 510
Query: 752 FNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIXXXXXXXXXXXXXX 811
            N   L IL LS N  +GNIP  +     L +L L  N   G +P               
Sbjct: 511 EN---LAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFI 567
Query: 812 XXXXHGHIPS------CFDNTTL-------HERYNNGSSLQPFETSFVIMGGMDVDPKKQ 858
               + +I +      C     L        E+ N  S+  P   +  + GG        
Sbjct: 568 AGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGH------- 620
Query: 859 ILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAG 918
                     S T+   G     +  LD+S N L G+IP +IG++  +  LNL HN+++G
Sbjct: 621 ---------TSPTFDNNGS----MMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISG 667
Query: 919 PIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQFATF 978
            IP    +LR +  LDLS NKL  +IP  +  L  L    ++ NNLSG IPE   QF TF
Sbjct: 668 SIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE-MGQFETF 726
Query: 979 NESSYEGNPFLCGPPLPIC 997
             + +  NP LCG PLP C
Sbjct: 727 PPAKFLNNPGLCGYPLPRC 745

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score =  186 bits (472), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 170/559 (30%), Positives = 254/559 (45%), Gaps = 72/559 (12%)
Query: 483 FLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLL 542
           FL +   L+++ +S  K++ +F +  +   T+L+ L++ ++  VGP  +P    K L+ L
Sbjct: 218 FLGDCSALQHLDISGNKLSGDF-SRAISTCTELKLLNISSNQFVGP--IPPLPLKSLQYL 274
Query: 543 DVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFG------------------- 583
            +++N F G IP  +      LT  ++S N   G++P  FG                   
Sbjct: 275 SLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGEL 334
Query: 584 ------NMNFLQFLDLSNNQLTGEIPEHLAMGCVXXXXXXXXXXXXEGHMF---SRNFNL 634
                  M  L+ LDLS N+ +GE+PE L                  G +     +N   
Sbjct: 335 PMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKN 394
Query: 635 TNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNH 694
           T L  L L+ N F G+IP +LS CS L  L LS N LSG IP  LG+L+ LR + +  N 
Sbjct: 395 T-LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNM 453
Query: 695 IEGPIPLEFCQLRILQILDISDNNISGSLPS-CYDFVCIEQVHLSKNMLHGQLKE--GTF 751
           +EG IP E   ++ L+ L +  N+++G +PS   +   +  + LS N L G++ +  G  
Sbjct: 454 LEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRL 513
Query: 752 FNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIXXXXXXXXXXXXXX 811
            N   L IL LS N  +GNIP  +     L +L L  N   G +P               
Sbjct: 514 EN---LAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFI 570
Query: 812 XXXXHGHIPS------CFDNTTL-------HERYNNGSSLQPFETSFVIMGGMDVDPKKQ 858
               + +I +      C     L        E+ N  S+  P   +  + GG        
Sbjct: 571 AGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGH------- 623
Query: 859 ILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAG 918
                     S T+   G     +  LD+S N L G+IP +IG++  +  LNL HN+++G
Sbjct: 624 ---------TSPTFDNNGS----MMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISG 670
Query: 919 PIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQFATF 978
            IP    +LR +  LDLS NKL  +IP  +  L  L    ++ NNLSG IPE   QF TF
Sbjct: 671 SIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE-MGQFETF 729
Query: 979 NESSYEGNPFLCGPPLPIC 997
             + +  NP LCG PLP C
Sbjct: 730 PPAKFLNNPGLCGYPLPRC 748

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 73.9 bits (180), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 71/257 (27%), Positives = 105/257 (40%), Gaps = 55/257 (21%)
Query: 765 NHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIXXXXXXXXXXXXXXXXXXHGHIPSCFD 824
           N+L G IP  +  L+QL YL + H N+ G +P                            
Sbjct: 87  NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL------------------- 127
Query: 825 NTTLHERYNNGS-SLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLS 883
             TL   YN  S +L P  +S   + G+  D  +         + +I  +Y G    L +
Sbjct: 128 -VTLDFSYNALSGTLPPSISSLPNLVGITFDGNR--------ISGAIPDSY-GSFSKLFT 177
Query: 884 GLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSN----------------- 926
            + +S NRL G IPP   NL  +  ++LS N L G     F +                 
Sbjct: 178 SMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFD 236
Query: 927 ------LRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQFATFNE 980
                  +N+  LDL  N++   +P  L +L  L   +V++NNL G+IP+       F+ 
Sbjct: 237 LGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDV 295
Query: 981 SSYEGNPFLCGPPLPIC 997
           S+Y  N  LCG PLP C
Sbjct: 296 SAYANNKCLCGSPLPAC 312

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 48.1 bits (113), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 896 IPPQIGNLTKIQTLNLSH-NNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTL 954
           IP  + NL  +  L +   NNL GPIP   + L  +  L +++  +S  IP  L ++ TL
Sbjct: 68  IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 955 AVFSVAYNNLSGKIPERAAQFATFNESSYEGN 986
                +YN LSG +P   +        +++GN
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGN 159

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	1077
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-159
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-86
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	8e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-78
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-75
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-54
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-42
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-13
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-08
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-66
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-62
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-59
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-57
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-46
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-41
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-65
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-61
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-60
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	9e-58
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-55
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-55
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	6e-62
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	8e-56
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-51
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-49
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-41
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-33
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	8e-27
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-60
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-53
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-52
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-44
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-42
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-40
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-31
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-60
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-59
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-57
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-54
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-53
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-35
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-56
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-55
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-54
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-48
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-47
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-37
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-32
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-50
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-46
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	8e-44
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-32
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-44
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-42
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-40
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-36
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-33
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-29
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-26
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	9e-07
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-40
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-38
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-37
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-36
1o6v_A	466	Internalin A; bacterial infection, extracellular r	8e-36
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-34
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-34
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-29
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-39
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	9e-39
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-38
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-37
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-36
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-35
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-35
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-34
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-32
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-26
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-21
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-11
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-08
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-37
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-29
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-28
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-26
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-26
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	7e-23
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-22
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-16
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	8e-36
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-35
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	7e-34
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-33
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-33
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-32
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	9e-31
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-30
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-30
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-22
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	8e-32
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-30
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-30
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-28
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	8e-28
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-26
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	9e-26
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-25
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-22
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-31
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-29
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-29
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-29
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	7e-29
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-24
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-22
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-30
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-28
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-24
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-24
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-23
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-22
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	8e-29
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-28
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-28
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	6e-28
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-26
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	8e-22
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	7e-20
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-19
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-17
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	9e-28
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-25
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-25
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-22
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-21
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-21
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-20
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	9e-15
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	7e-07
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	4e-27
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	5e-23
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-21
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-21
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-19
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	5e-14
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-26
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-26
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-26
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	7e-24
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-23
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	6e-22
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-18
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-26
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-24
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-23
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-20
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	7e-18
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	9e-15
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	6e-26
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	9e-26
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	6e-24
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-23
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-23
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	7e-21
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-09
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-25
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-23
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-19
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	6e-19
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-13
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	9e-13
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-11
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	5e-25
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-24
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-22
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	5e-19
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-18
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	8e-18
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-14
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-07
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-07
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	6e-05
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	7e-25
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-24
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-22
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	8e-20
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-19
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-17
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-15
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-11
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-08
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	5e-07
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-04
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-24
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-23
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	5e-21
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-18
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	6e-14
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-13
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-13
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	9e-13
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-11
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	5e-11
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-24
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-23
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	9e-22
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	7e-20
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-17
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	9e-16
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	4e-12
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-23
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-21
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-19
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-18
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-16
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-14
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	7e-14
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	8e-11
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-23
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-20
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-20
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-19
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	6e-16
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	8e-15
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-14
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	9e-14
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-07
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-23
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	7e-21
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	7e-21
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	8e-12
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-11
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-11
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-11
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-10
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-08
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-06
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-22
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-21
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-20
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-19
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-18
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-17
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	7e-16
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	8e-15
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-14
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	9e-08
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-07
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-22
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	7e-22
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-21
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-21
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-20
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-19
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-18
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-16
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-13
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-07
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-21
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-20
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-20
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	6e-16
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-15
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-13
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	4e-13
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-12
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	5e-21
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-20
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	8e-19
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-18
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	9e-18
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-17
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	5e-14
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	6e-13
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-11
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-09
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-06
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	9e-21
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-18
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-18
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	6e-18
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	6e-17
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-11
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	8e-05
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-20
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-18
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	4e-17
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-15
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	5e-15
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	7e-14
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	4e-12
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	9e-12
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	8e-05
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-20
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-19
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-18
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	5e-18
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	7e-17
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	8e-15
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-09
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-09
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-09
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	5e-20
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-17
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	5e-16
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	7e-15
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	4e-14
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	4e-14
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	7e-14
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-11
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-10
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	9e-20
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-19
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-16
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	6e-15
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-13
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-10
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	5e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-05
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-04
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-17
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-15
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	6e-14
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	8e-06
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	4e-05
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	4e-17
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	4e-14
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	8e-13
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-10
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-08
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	5e-08
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-07
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	4e-07
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	8e-06
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-05
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	9e-05
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	6e-16
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	7e-15
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-14
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-14
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-13
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-13
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	6e-09
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-07
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-05
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	4e-14
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-12
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-12
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	5e-12
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	4e-11
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	8e-11
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-08
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	4e-08
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	5e-08
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	6e-14
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-12
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	6e-12
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-07
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	6e-06
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	1e-05
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	4e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	8e-14
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	6e-13
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-12
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-10
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-10
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-10
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-09
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-09
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-08
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-08
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-06
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-06
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-13
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	5e-13
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-12
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-11
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-10
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	7e-10
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	4e-09
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-07
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	7e-05
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-04
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	6e-13
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	7e-13
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	7e-13
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-12
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	6e-12
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	5e-10
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-08
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-12
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-11
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-11
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	9e-11
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	6e-10
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-06
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	9e-12
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-11
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	3e-11
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	4e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	7e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	7e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-11
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-09
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-09
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-08
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-07
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	7e-07
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	8e-04
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	2e-11
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	1e-10
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	3e-10
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	1e-09
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	2e-09
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	4e-11
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	9e-10
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	3e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	5e-11
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	6e-11
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-09
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-09
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-08
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	4e-08
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-07
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-04
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-04
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-04
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	4e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-10
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	4e-09
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	3e-08
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	4e-08
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	4e-08
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	4e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	9e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	9e-04
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	3e-10
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	2e-05
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	1e-04
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	3e-10
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	7e-09
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	4e-08
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	9e-06
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	4e-05
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	7e-05
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	8e-05
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-04
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	5e-10
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	4e-08
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-07
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-07
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-07
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	4e-07
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	5e-07
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-06
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	4e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-07
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-09
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-08
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-07
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	9e-07
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	7e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-08
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-08
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	5e-08
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	5e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	6e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	4e-08
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	2e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	4e-05
3e6j_A	229	Variable lymphocyte receptor diversity region; var	2e-07
3e6j_A	229	Variable lymphocyte receptor diversity region; var	3e-05
3e6j_A	229	Variable lymphocyte receptor diversity region; var	1e-04
3e6j_A	229	Variable lymphocyte receptor diversity region; var	5e-04
3e6j_A	229	Variable lymphocyte receptor diversity region; var	7e-04
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	5e-07
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	6e-05
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	1e-04
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	5e-04
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	8e-07
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	8e-05
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	9e-05
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	3e-04
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-06
3m19_A	251	Variable lymphocyte receptor A diversity region; a	3e-06
3m19_A	251	Variable lymphocyte receptor A diversity region; a	6e-05
3m19_A	251	Variable lymphocyte receptor A diversity region; a	9e-05
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-04
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	5e-06
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	3e-04
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	2e-05
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	2e-05
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	5e-05
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	9e-05
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	2e-05

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  489 bits (1262), Expect = e-159
 Identities = 208/784 (26%), Positives = 336/784 (42%), Gaps = 95/784 (12%)

Query: 257  LSYLHLLRVGIR-DGSKLLQSMGSFPSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYM 315
            ++ + L    +    S +  S+ S   L +L LS ++   +V+    GF    SL  L +
Sbjct: 52   VTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVS----GFKCSASLTSLDL 107

Query: 316  DDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLR 375
                ++   + L  +G S   +++L++S++++    +    G   L  L+ L ++ N + 
Sbjct: 108  SRNSLSGPVTTLTSLG-SCSGLKFLNVSSNTLDFPGKV--SGGLKLNSLEVLDLSANSIS 164

Query: 376  GSLPWCLA---NMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPL 432
            G+             L+ L +S N++ G +    +    ++E L +S N+F   I    L
Sbjct: 165  GANVVGWVLSDGCGELKHLAISGNKISGDV---DVSRCVNLEFLDVSSNNFSTGIPF--L 219

Query: 433  FNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEY 492
             + S L+  D   N+++ +                              + +    +L+ 
Sbjct: 220  GDCSALQHLDISGNKLSGDF----------------------------SRAISTCTELKL 251

Query: 493  VRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPI-HSHKQLRLLDVSKNNFQG 551
            + +S  +     P   L     L+ LSL  +   G     +  +   L  LD+S N+F G
Sbjct: 252  LNISSNQFVGPIPPLPL---KSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYG 308

Query: 552  HIPLEIGDILSRLTVFNISMNALDGSIP-SSFGNMNFLQFLDLSNNQLTGEIPEHLAMGC 610
             +P   G   S L    +S N   G +P  +   M  L+ LDLS N+ +GE+PE L    
Sbjct: 309  AVPPFFGS-CSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLS 367

Query: 611  VSLRSLALSNNNLEGHMFSR--NFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSN 668
             SL +L LS+NN  G +           L  L L+ N F G+IP +LS CS L  L LS 
Sbjct: 368  ASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSF 427

Query: 669  NSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYD 728
            N LSG IP  LG+L+ LR + +  N +EG IP E   ++ L+ L +  N+++G +PS   
Sbjct: 428  NYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSG-- 485

Query: 729  FVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAH 788
                                    NC  L  + LS N L G IP  +  L  L+ L L++
Sbjct: 486  ----------------------LSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSN 523

Query: 789  NNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFE------ 842
            N+  G +P +L     L  LDL+ N  +G IP+     +     N  +  +         
Sbjct: 524  NSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGM 583

Query: 843  TSFVIMGGMDVDPKKQILESFDFTTKSITY-----TYQGRVP------SLLSGLDLSCNR 891
                   G  ++ +    E  +  +           Y G           +  LD+S N 
Sbjct: 584  KKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNM 643

Query: 892  LIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVEL 951
            L G+IP +IG++  +  LNL HN+++G IP    +LR +  LDLS NKL  +IP  +  L
Sbjct: 644  LSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSAL 703

Query: 952  NTLAVFSVAYNNLSGKIPERAAQFATFNESSYEGNPFLCGPPLPICISPTTMPEASPSNE 1011
              L    ++ NNLSG IPE   QF TF  + +  NP LCG PLP C  P+     +    
Sbjct: 704  TMLTEIDLSNNNLSGPIPEM-GQFETFPPAKFLNNPGLCGYPLPRC-DPSNADGYAHHQR 761

Query: 1012 GDNN 1015
              ++
Sbjct: 762  SHHH 765

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  294 bits (754), Expect = 4e-86
 Identities = 159/716 (22%), Positives = 265/716 (37%), Gaps = 173/716 (24%)

Query: 67  VSCNNTMGRVVVLDLSQTHRGEYWYLNASL-FTPFQQLESLDLRDNDIAGCVENEGLERL 125
              ++  G +  L +S         ++  +  +    LE LD+  N+ +      G+  L
Sbjct: 171 WVLSDGCGELKHLAISGNK------ISGDVDVSRCVNLEFLDVSSNNFST-----GIPFL 219

Query: 126 SRLSNLKMLNLVGNLFNNSILSSLARLSSLTSLDLSANRLKGSIDIKGPKRLSRLNNLKV 185
              S L+ L++ GN  +     +++  + L  L++S+N+  G I          L +L+ 
Sbjct: 220 GDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIP------PLPLKSLQY 273

Query: 186 FDLSGNLFNNSILSSLA-RLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDN 244
             L+ N F   I   L+    +L  L L  N   G++    F S S LE L +S N    
Sbjct: 274 LSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVP-PFFGSCSLLESLALSSNNF-- 330

Query: 245 FEVPQACSGLRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTETVTTTTQGF 304
                                    G   + ++     L  LDLS+N F+  +  +    
Sbjct: 331 ------------------------SGELPMDTLLKMRGLKVLDLSFNEFSGELPES---- 362

Query: 305 PHFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNN-SRTLDQGLC--PL 361
                                    +     S+  L LS+    NN S  +   LC  P 
Sbjct: 363 -------------------------LTNLSASLLTLDLSS----NNFSGPILPNLCQNPK 393

Query: 362 VHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDN 421
             LQEL++ +N   G +P  L+N + L  L +S N L G+I SS L  L+ + DL L  N
Sbjct: 394 NTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSS-LGSLSKLRDLKLWLN 452

Query: 422 HFQ--IPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGIT 479
             +  IP     L     L+    + N++  EI                           
Sbjct: 453 MLEGEIPQE---LMYVKTLETLILDFNDLTGEI--------------------------- 482

Query: 480 FPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQL 539
            P  L N  +L ++ LS+ ++  E P W                         I   + L
Sbjct: 483 -PSGLSNCTNLNWISLSNNRLTGEIPKW-------------------------IGRLENL 516

Query: 540 RLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLT 599
            +L +S N+F G+IP E+GD    L   +++ N  +G+IP++       Q   ++ N + 
Sbjct: 517 AILKLSNNSFSGNIPAELGD-CRSLIWLDLNTNLFNGTIPAAMFK----QSGKIAANFIA 571

Query: 600 GEIPEHLAMGCVSLRSLALSNN--NLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSK 657
           G+   ++       +    + N    +G    +   L+      +    + G    +   
Sbjct: 572 GKRYVYIK-NDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDN 630

Query: 658 CSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDN 717
             S+  L +S N LSG IP+ +G++  L  + +  N I G IP E   LR L ILD+S N
Sbjct: 631 NGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSN 690

Query: 718 NISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPD 773
            + G +P                                L  +DLS N+L+G IP+
Sbjct: 691 KLDGRIPQ------------------------AMSALTMLTEIDLSNNNLSGPIPE 722

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 52.2 bits (126), Expect = 8e-07
 Identities = 16/72 (22%), Positives = 33/72 (45%), Gaps = 4/72 (5%)

Query: 902 NLTKIQTLNLSHNNLA---GPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFS 958
              K+ +++LS   L      + S+  +L  +ESL LS + ++  +        +L    
Sbjct: 48  RDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVS-GFKCSASLTSLD 106

Query: 959 VAYNNLSGKIPE 970
           ++ N+LSG +  
Sbjct: 107 LSRNSLSGPVTT 118

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  269 bits (690), Expect = 5e-78
 Identities = 127/713 (17%), Positives = 226/713 (31%), Gaps = 116/713 (16%)

Query: 282 SLNTLDLSYNNFTETVTTTTQGFPH--FKSLKELYMDDARIA--LNTSFLQIIGESMPSI 337
           S    D S+   T+         P     ++  L +   ++      +F          +
Sbjct: 5   SHEVADCSHLKLTQ--------VPDDLPTNITVLNLTHNQLRRLPAANF-----TRYSQL 51

Query: 338 QYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQ 397
             L +  +++S       +    L  L+ L++  N+L        A  T+L  L + SN 
Sbjct: 52  TSLDVGFNTISKLE---PELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNS 108

Query: 398 LIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHS 457
            I  I ++P +   ++  L LS N       L        L+     NN+I   +     
Sbjct: 109 -IQKIKNNPFVKQKNLITLDLSHNGLSS-TKLGTQVQLENLQELLLSNNKIQ-ALKSEEL 165

Query: 458 LTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQ 517
               N  L+ L LSS        P   +    L  + L+++++       L         
Sbjct: 166 DIFANSSLKKLELSSNQIKEF-SPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLE------ 218

Query: 518 LSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDI-LSRLTVFNISMNALDG 576
                            ++  +R L +S +            +  + LT+ ++S N L+ 
Sbjct: 219 ----------------LANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNV 262

Query: 577 SIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNF---- 632
               SF  +  L++  L  N +       L  G  ++R L L  +  +  +   +     
Sbjct: 263 VGNDSFAWLPQLEYFFLEYNNIQHLFSHSLH-GLFNVRYLNLKRSFTKQSISLASLPKID 321

Query: 633 -----NLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGK--IPRWLGNL--T 683
                 L  L  L +E N   G      +   +L+ L LSN+  S +        +L  +
Sbjct: 322 DFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHS 381

Query: 684 VLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLH 743
            L  + + KN I       F  L  L++LD+  N I   L                    
Sbjct: 382 PLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTG------------------ 423

Query: 744 GQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEG--EVPIQLCR 801
                  +     +  + LSYN       +    +  L  L+L    L+     P     
Sbjct: 424 -----QEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQP 478

Query: 802 LNQLQLLDLSNNNLHGHIPSCFDN----TTLHERYNNGSSLQPFETSFVIMGGMDVDPKK 857
           L  L +LDLSNNN+        +       L  ++NN                       
Sbjct: 479 LRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNN----------------------- 515

Query: 858 QILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLA 917
             L             Y  +  S L  L+L  N           +L +++ ++L  NNL 
Sbjct: 516 --LARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLN 573

Query: 918 GPIPSTFSNLRNIESLDLSYNKLSWKIPYQL-VELNTLAVFSVAYNNLSGKIP 969
               S F+N  +++SL+L  N ++             L    + +N       
Sbjct: 574 TLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCE 626

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  260 bits (666), Expect = 9e-75
 Identities = 118/644 (18%), Positives = 210/644 (32%), Gaps = 48/644 (7%)

Query: 100 FQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILSSLARLSSLTSLD 159
              +  L+L  N +            +R S L  L++  N  +        +L  L  L+
Sbjct: 24  PTNITVLNLTHNQLRRLPAAN----FTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLN 79

Query: 160 LSANRLKGSIDIKGPKRLSRLNNLKVFDLSGNLFNNSILSSLARLSSLRSLLLYDNRLEG 219
           L  N L         K  +   NL    L  N       +   +  +L +L L  N L  
Sbjct: 80  LQHNELSQLS----DKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSS 135

Query: 220 SIDVKEFDSLSNLEELDMSYNEIDNF-EVPQACSGLRKLSYLHLLRVGIRDGSKLLQSMG 278
           +        L NL+EL +S N+I               L  L L    I++ S       
Sbjct: 136 TKL-GTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSP--GCFH 192

Query: 279 SFPSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDARIALNTSFLQIIGESMPSIQ 338
           +   L  L L+      ++T          S++ L + +++++  TS    +G    ++ 
Sbjct: 193 AIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLS-TTSNTTFLGLKWTNLT 251

Query: 339 YLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQL 398
            L LS ++++            L  L+   +  N+++      L  + ++R L++  +  
Sbjct: 252 MLDLSYNNLNVVGNDS---FAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFT 308

Query: 399 IGSIS--------SSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEINA 450
             SIS              L  +E L + DN     I          LK     N+  + 
Sbjct: 309 KQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPG-IKSNMFTGLINLKYLSLSNSFTSL 367

Query: 451 EIIESHSLT-TPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLL 509
             + + +     +  L  L L+      I           LE + L   ++ +E      
Sbjct: 368 RTLTNETFVSLAHSPLHILNLTKNKISKI-ESDAFSWLGHLEVLDLGLNEIGQELTGQEW 426

Query: 510 ENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQG--HIPLEIGDILSRLTVF 567
                + ++ L  +  +   R        L+ L + +   +     P      L  LT+ 
Sbjct: 427 RGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQP-LRNLTIL 485

Query: 568 NISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHM 627
           ++S N +          +  L+ LDL +N L                   L  +   G  
Sbjct: 486 DLSNNNIANINDDMLEGLEKLEILDLQHNNLA-----------------RLWKHANPGGP 528

Query: 628 FSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRH 687
                 L++L  L LE N F     +       L+ + L  N+L+        N   L+ 
Sbjct: 529 IYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKS 588

Query: 688 IIMPKNHIEGPIPLEFC-QLRILQILDISDNNISGSLPSCYDFV 730
           + + KN I       F    R L  LD+  N    +  S   FV
Sbjct: 589 LNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFV 632

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  200 bits (512), Expect = 3e-54
 Identities = 88/453 (19%), Positives = 158/453 (34%), Gaps = 50/453 (11%)

Query: 538 QLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQ 597
              + D S       +P    D+ + +TV N++ N L     ++F   + L  LD+  N 
Sbjct: 5   SHEVADCSHLKLT-QVP---DDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNT 60

Query: 598 LTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSK 657
           ++   PE                             L  L  L L+ N       ++ + 
Sbjct: 61  ISKLEPELCQ-------------------------KLPMLKVLNLQHNELSQLSDKTFAF 95

Query: 658 CSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDN 717
           C++L  L L +NS+             L  + +  N +         QL  LQ L +S+N
Sbjct: 96  CTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNN 155

Query: 718 NISGSLPSCYDFVC---IEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDR 774
            I        D      ++++ LS N +      G F     L  L L+   L  ++ ++
Sbjct: 156 KIQALKSEELDIFANSSLKKLELSSNQIKE-FSPGCFHAIGRLFGLFLNNVQLGPSLTEK 214

Query: 775 V---DGLSQLSYLILAHNNLEGEVP--IQLCRLNQLQLLDLSNNNLHGHIPSCFDN---- 825
           +      + +  L L+++ L           +   L +LDLS NNL+      F      
Sbjct: 215 LCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQL 274

Query: 826 TTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSL--LS 883
                 YNN   L     S   +  +     K+       +  S+          L  L 
Sbjct: 275 EYFFLEYNNIQHLFS--HSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLE 332

Query: 884 GLDLSCNRLIGHIPPQIGNLTKIQTLNLSHN--NLAGPIPSTFSNLRN--IESLDLSYNK 939
            L++  N + G        L  ++ L+LS++  +L      TF +L +  +  L+L+ NK
Sbjct: 333 HLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNK 392

Query: 940 LSWKIPYQLVELNTLAVFSVAYNNLSGKIPERA 972
           +S         L  L V  +  N +  ++  + 
Sbjct: 393 ISKIESDAFSWLGHLEVLDLGLNEIGQELTGQE 425

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  164 bits (418), Expect = 3e-42
 Identities = 63/370 (17%), Positives = 125/370 (33%), Gaps = 23/370 (6%)

Query: 92  LNASLFTPFQQLESLDLRDNDIAGCVENEGLERL-----SRLSNLKMLNLVGNLFNNSIL 146
           L +        +  L+L+ +     +    L ++       L  L+ LN+  N       
Sbjct: 287 LFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKS 346

Query: 147 SSLARLSSLTSLDLSANRLKGSIDIKGPKRLSRLNNLKVFDLSGNLFNNSILSSLARLSS 206
           +    L +L  L LS +                 + L + +L+ N  +     + + L  
Sbjct: 347 NMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGH 406

Query: 207 LRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVG 266
           L  L L  N +   +  +E+  L N+ E+ +SYN+        + + +  L  L L RV 
Sbjct: 407 LEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLT-RNSFALVPSLQRLMLRRVA 465

Query: 267 IRDGSKLLQSMGSFPSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDARIA----- 321
           +++            +L  LDLS NN               + L+ L +    +A     
Sbjct: 466 LKNVDSSPSPFQPLRNLTILDLSNNNIA---NINDDMLEGLEKLEILDLQHNNLARLWKH 522

Query: 322 LNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCP-LVHLQELHMADNDLRGSLPW 380
            N        + +  +  L+L +    N    +   +   L  L+ + +  N+L      
Sbjct: 523 ANPGGPIYFLKGLSHLHILNLES----NGFDEIPVEVFKDLFELKIIDLGLNNLNTLPAS 578

Query: 381 CLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLF----NHS 436
              N  SL+ L++  N +             ++ +L +  N F         F    N +
Sbjct: 579 VFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINET 638

Query: 437 RLKIFDAENN 446
              I +  ++
Sbjct: 639 HTNIPELSSH 648

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 73.5 bits (181), Expect = 2e-13
 Identities = 35/172 (20%), Positives = 55/172 (31%), Gaps = 35/172 (20%)

Query: 800 CRLNQLQLLDLSNNNLHGHIPSCFDNTT-LHERYNNGSSLQPFETSFVIMGGMDVDPKKQ 858
           C ++  ++ D S+  L         N T L+  +N    L                    
Sbjct: 2   CTVS-HEVADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPA------------------ 42

Query: 859 ILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAG 918
              +F             R   L S LD+  N +    P     L  ++ LNL HN L+ 
Sbjct: 43  --ANF------------TRYSQLTS-LDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQ 87

Query: 919 PIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPE 970
               TF+   N+  L L  N +        V+   L    +++N LS     
Sbjct: 88  LSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLG 139

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 55.8 bits (135), Expect = 5e-08
 Identities = 27/149 (18%), Positives = 44/149 (29%), Gaps = 12/149 (8%)

Query: 78  VLDLSQTH-----RGEYWYLNASLFTPFQQLESLDLRDNDIAGCVENEGLERLSRLSNLK 132
           +LDL   +     +                L  L+L  N                L  LK
Sbjct: 508 ILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEV----FKDLFELK 563

Query: 133 MLNLVGNLFNNSILSSLARLSSLTSLDLSANRLKGSIDIKGPKRLSRLNNLKVFDLSGNL 192
           +++L  N  N    S      SL SL+L  N +     ++         NL   D+  N 
Sbjct: 564 IIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITS---VEKKVFGPAFRNLTELDMRFNP 620

Query: 193 FNNSILSSLARLSSLRSLLLYDNRLEGSI 221
           F+ +  S    ++ +         L    
Sbjct: 621 FDCTCESIAWFVNWINETHTNIPELSSHY 649

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  234 bits (600), Expect = 3e-66
 Identities = 93/635 (14%), Positives = 175/635 (27%), Gaps = 124/635 (19%)

Query: 363 HLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSP---LIHLTSIEDLILS 419
            +  L +      G +P  +  +T L +L + S+    +        +    S E     
Sbjct: 82  RVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKM 141

Query: 420 DNHFQ-IPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGI 478
             H+Q   +  +P  + S L      ++     I +S  +T    +   +   S     +
Sbjct: 142 RMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITL---KDTQIGQLSNNITFV 198

Query: 479 TFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQ 538
              K +     L    + +     E      EN       +           L   + K 
Sbjct: 199 --SKAVMRLTKLRQFYMGNSPFVAENICEAWEN------ENSEYAQQYKTEDLKWDNLKD 250

Query: 539 LRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNAL--------DGSIPSSFGNMNFLQF 590
           L  ++V        +P  +   L  + + N++ N          D    +       +Q 
Sbjct: 251 LTDVEVYNCPNLTKLPTFLKA-LPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQI 309

Query: 591 LDLSNNQLT-GEIPEHLAMGCVSLRSLALSNNNLEGHM--FSRNFNLTNLIWLQLEGNHF 647
           + +  N L    +   L      L  L    N LEG +  F    +   L  L L  N  
Sbjct: 310 IYIGYNNLKTFPVETSLQ-KMKKLGMLECLYNQLEGKLPAFG---SEIKLASLNLAYNQI 365

Query: 648 VGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWL--GNLTVLRHIIMPKNHIEG-------P 698
                        ++ L  ++N L   IP      +++V+  I    N I         P
Sbjct: 366 TEIPANFCGFTEQVENLSFAHNKLKY-IPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDP 424

Query: 699 IPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLM 758
           +     +   +  +++S+N IS                              F     L 
Sbjct: 425 LDPTPFKGINVSSINLSNNQISKFPKE------------------------LFSTGSPLS 460

Query: 759 ILDLSYNHLNG-------NIPDRVDGLSQLSYLILAHNNLEG-EVPIQLCRLNQLQLLDL 810
            ++L  N L         +  +       L+ + L  N L       +   L  L  +DL
Sbjct: 461 SINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDL 520

Query: 811 SNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSI 870
           S N+     P+            N S+L+ F                             
Sbjct: 521 SYNSFSK-FPTQP---------LNSSTLKGF----------------------------- 541

Query: 871 TYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNI 930
                     + +  D   NR +   P  I     +  L +  N++         N+   
Sbjct: 542 ---------GIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKITPNI--- 589

Query: 931 ESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLS 965
             LD+  N         +       ++ + Y+   
Sbjct: 590 SVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQ 624

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  223 bits (570), Expect = 3e-62
 Identities = 97/673 (14%), Positives = 194/673 (28%), Gaps = 156/673 (23%)

Query: 125 LSRLSNLKMLNLVGNLFNNSILSSLARLSSLTSLDLSANRLKGSIDIKGPKRLSRLNNLK 184
           L+    +  L+L G   +  +  ++ +L+ L  L L ++  K +  + GPK +S   + +
Sbjct: 77  LNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDE 136

Query: 185 VFDLSGNLFNNSILSSLARL--SSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEI 242
                   +  + +    R   S L    +  +  + SI  K         ++    N I
Sbjct: 137 QKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIK-KSSRITLKDTQIGQLSNNI 195

Query: 243 DNFEVPQACSGLRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTETVTTTTQ 302
                                       + + +++     L    +  + F         
Sbjct: 196 ----------------------------TFVSKAVMRLTKLRQFYMGNSPFV-------- 219

Query: 303 GFPHFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLV 362
                                         +    +     NS  +   +T D     L 
Sbjct: 220 ------------------------------AENICEAWENENSEYAQQYKTEDLKWDNLK 249

Query: 363 HLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISS-------SPLIHLTSIED 415
            L ++ + +      LP  L  +  +++++V+ N+ I            +       I+ 
Sbjct: 250 DLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQI 309

Query: 416 LILSDNHFQ-IPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGY 474
           + +  N+ +  P+    L    +L + +   N++  ++    S      +L SL L+   
Sbjct: 310 IYIGYNNLKTFPVETS-LQKMKKLGMLECLYNQLEGKLPAFGSEI----KLASLNLA--- 361

Query: 475 RDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVG-PFRLPI 533
                     YNQ       ++ I      P        ++  LS  ++ L   P     
Sbjct: 362 ----------YNQ-------ITEI------PANFCGFTEQVENLSFAHNKLKYIPNIFDA 398

Query: 534 HSHKQLRLLDVSKNNFQGHIPLEIGDI------LSRLTVFNISMNALDGSIPSSFGNMNF 587
            S   +  +D S N            +         ++  N+S N +       F   + 
Sbjct: 399 KSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSP 458

Query: 588 LQFLDLSNNQLTGEIPEHLAM------GCVSLRSLALSNNNLEGHMFSRNF-NLTNLIWL 640
           L  ++L  N LT      L            L S+ L  N L           L  L+ +
Sbjct: 459 LSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGI 518

Query: 641 QLEGNHFVGEIPQSLSKCSSLQGLFLSN------NSLSGKIPRWLGNLTVLRHIIMPKNH 694
            L  N F  + P      S+L+G  + N      N    + P  +     L  + +  N 
Sbjct: 519 DLSYNSF-SKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSND 577

Query: 695 IEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNC 754
           I   +  +      + +LDI DN       S                             
Sbjct: 578 IRK-VNEKITPN--ISVLDIKDNPNISIDLS------------------------YVCPY 610

Query: 755 LTLMILDLSYNHL 767
           +   +  L Y+  
Sbjct: 611 IEAGMYMLFYDKT 623

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  216 bits (551), Expect = 1e-59
 Identities = 83/617 (13%), Positives = 180/617 (29%), Gaps = 116/617 (18%)

Query: 382 LANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIF 441
           L +   +  L +      G +  + +  LT +E L L  +  ++   L            
Sbjct: 77  LNSNGRVTGLSLEGFGASGRVPDA-IGQLTELEVLALGSHGEKVNERLF----------- 124

Query: 442 DAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMN 501
                     I  + S          +     + D      F     DL    ++     
Sbjct: 125 ------GPKGISANMSDEQKQ--KMRMHYQKTFVDYDPREDFS----DLIKDCINSDPQQ 172

Query: 502 EEFPNWLLENNTKLRQLSLVNDSLVGPFRLP--IHSHKQLRLLDVSKNNFQGHIPLEIGD 559
           +           K  Q+  +++++     +   +    +LR   +  + F      E  +
Sbjct: 173 KSIKK-SSRITLKDTQIGQLSNNITF---VSKAVMRLTKLRQFYMGNSPFVAENICEAWE 228

Query: 560 ILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALS 619
                   N        +    + N+  L  +++ N     ++P  L      ++ + ++
Sbjct: 229 NE------NSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLK-ALPEMQLINVA 281

Query: 620 NNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSL-SGKIPRW 678
            N                     E      +          +Q +++  N+L +  +   
Sbjct: 282 CNRGIS----------------GEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETS 325

Query: 679 LGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPS-CYDFVCIEQVHL 737
           L  +  L  +    N +EG +P  F     L  L+++ N I+    + C     +E +  
Sbjct: 326 LQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSF 384

Query: 738 SKNMLHGQLKEGTFFNCLTLMILDLSYNHLNG-------NIPDRVDGLSQLSYLILAHNN 790
           + N L          +   +  +D SYN +          +         +S + L++N 
Sbjct: 385 AHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQ 444

Query: 791 LEGEVPIQLCRLNQLQLLDLSNNNLHG-------HIPSCFDN----TTLHERYNNGSSLQ 839
           +           + L  ++L  N L              F N    T++  R+N  + L 
Sbjct: 445 ISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLS 504

Query: 840 PFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQ 899
                                   DF   ++ Y         L G+DLS N      P Q
Sbjct: 505 D-----------------------DFRATTLPY---------LVGIDLSYNSF-SKFPTQ 531

Query: 900 IGNLTKIQTLNLSH------NNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNT 953
             N + ++   + +      N      P   +   ++  L +  N +  K+  ++     
Sbjct: 532 PLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIR-KVNEKI--TPN 588

Query: 954 LAVFSVAYNNLSGKIPE 970
           ++V  +  N        
Sbjct: 589 ISVLDIKDNPNISIDLS 605

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  209 bits (535), Expect = 1e-57
 Identities = 81/581 (13%), Positives = 179/581 (30%), Gaps = 61/581 (10%)

Query: 276 SMGSFPSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDARIALNTSFLQIIGESMP 335
           S+ S   +  L L     +  V            L+ L +      +N        + + 
Sbjct: 76  SLNSNGRVTGLSLEGFGASGRVPDA---IGQLTELEVLALGSHGEKVN--ERLFGPKGIS 130

Query: 336 SIQYLSLSNSSVSNNSRTLDQGLCPLV--HLQELHMADNDLRGSLPWCLANMTSLRILDV 393
           +            +  +T            L +  +  +  + S+            +  
Sbjct: 131 ANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQ 190

Query: 394 SSNQLIGSISSSPLIHLTSIEDLILSDNHF--QIPISLEPLFNHSRLKIFDAENNEINAE 451
            SN +   +S + ++ LT +    + ++ F  +         N    + +  E+ + +  
Sbjct: 191 LSNNI-TFVSKA-VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWD-- 246

Query: 452 IIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSH--IKMNEEFPNWL- 508
                +L      L  + + +        P FL    +++ + ++       E+  +   
Sbjct: 247 -----NLK----DLTDVEVYNCPNLT-KLPTFLKALPEMQLINVACNRGISGEQLKDDWQ 296

Query: 509 ----LENNTKLRQLSLVNDSL-VGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSR 563
                    K++ + +  ++L   P    +   K+L +L+   N  +G +P   G    +
Sbjct: 297 ALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGS-EIK 354

Query: 564 LTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMG-CVSLRSLALSNNN 622
           L   N++ N +     +  G    ++ L  ++N+L   IP          + ++  S N 
Sbjct: 355 LASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNE 413

Query: 623 LEG-------HMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSG-- 673
           +          +    F   N+  + L  N       +  S  S L  + L  N L+   
Sbjct: 414 IGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIP 473

Query: 674 -----KIPRWLGNLTVLRHIIMPKNHIEG-PIPLEFCQLRILQILDISDNNIS------G 721
                       N  +L  I +  N +           L  L  +D+S N+ S       
Sbjct: 474 KNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPL 533

Query: 722 SLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQL 781
           +  +   F    Q     N    +  E     C +L  L +  N +   + +++     +
Sbjct: 534 NSSTLKGFGIRNQRDAQGNRTLREWPE-GITLCPSLTQLQIGSNDIRK-VNEKI--TPNI 589

Query: 782 SYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSC 822
           S L +  N         +C   +  +  L  +     I  C
Sbjct: 590 SVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQ-DIRGC 629

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  175 bits (446), Expect = 5e-46
 Identities = 56/418 (13%), Positives = 129/418 (30%), Gaps = 73/418 (17%)

Query: 567 FNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGH 626
           FN  ++        S  +   +  L L     +G +P+ +      L  LAL ++  + +
Sbjct: 62  FNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIG-QLTELEVLALGSHGEKVN 120

Query: 627 MFSRNF----NLTNLIWLQLEGNHFVGEIPQSLSK--CSSLQGLFLSNNSLSGKIPRWLG 680
                        +    Q    H+         +   S L    ++++     I +   
Sbjct: 121 ERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSR 180

Query: 681 NLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKN 740
                  I    N+I   +     +L  L+   + ++                       
Sbjct: 181 ITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENI---------------- 223

Query: 741 MLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLC 800
                        C      +  Y         + D L  L+ + + +     ++P  L 
Sbjct: 224 -------------CEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLK 270

Query: 801 RLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQIL 860
            L ++QL++++ N             +  +  ++  +L                P  + +
Sbjct: 271 ALPEMQLINVACNRG----------ISGEQLKDDWQALADA-------------PVGEKI 307

Query: 861 ESFDFTTKSITYTYQGRVPSLLSG------LDLSCNRLIGHIPPQIGNLTKIQTLNLSHN 914
           +       ++       V + L        L+   N+L G   P  G+  K+ +LNL++N
Sbjct: 308 QIIYIGYNNLKT---FPVETSLQKMKKLGMLECLYNQLEG-KLPAFGSEIKLASLNLAYN 363

Query: 915 NLAGPIPSTFSNLRNIESLDLSYNKLSWKIP--YQLVELNTLAVFSVAYNNLSGKIPE 970
            +     +       +E+L  ++NKL   IP  +    ++ ++    +YN +     +
Sbjct: 364 QITEIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGK 420

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  162 bits (411), Expect = 1e-41
 Identities = 65/549 (11%), Positives = 155/549 (28%), Gaps = 108/549 (19%)

Query: 91  YLNASLFTPFQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILS--- 147
           +   +      + +  DL  + I     +   + + + S + + +      +N+I     
Sbjct: 144 HYQKTFVDYDPREDFSDLIKDCINS---DPQQKSIKKSSRITLKDTQIGQLSNNITFVSK 200

Query: 148 SLARLSSLTSLDLSANRLKGSIDIKG---------------PKRLSRLNNLKVFDLSGNL 192
           ++ RL+ L    +  +        +                  +   L +L   ++    
Sbjct: 201 AVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCP 260

Query: 193 FNNSILSSLARLSSLRSLLLYDNRLEGSIDVK-------EFDSLSNLEELDMSYNEIDNF 245
               + + L  L  ++ + +  NR      +K       +      ++ + + YN +  F
Sbjct: 261 NLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTF 320

Query: 246 EVPQACSGLRKLSYLHL----LRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTETVTTTT 301
            V  +   ++KL  L      L          L + GS   L +L+L+YN  TE      
Sbjct: 321 PVETSLQKMKKLGMLECLYNQL-------EGKLPAFGSEIKLASLNLAYNQITEIPANF- 372

Query: 302 QGFPHFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSN----SSVSNNSRTLDQG 357
                 + ++ L     ++    +      +S+  +  +  S     S    N   LD  
Sbjct: 373 --CGFTEQVENLSFAHNKLKYIPNIFDA--KSVSVMSAIDFSYNEIGSVDGKNFDPLDPT 428

Query: 358 LCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQL------IGSISSSPLIHLT 411
               +++  +++++N +        +  + L  +++  N L           +    +  
Sbjct: 429 PFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTY 488

Query: 412 SIEDLILSDNHFQ-IPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLL 470
            +  + L  N    +            L   D   N  +                     
Sbjct: 489 LLTSIDLRFNKLTKLSDDFR-ATTLPYLVGIDLSYNSFS--------------------- 526

Query: 471 SSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFR 530
                    FP    N   L+   + +                   Q     +  +  + 
Sbjct: 527 --------KFPTQPLNSSTLKGFGIRN-------------------QRDAQGNRTLREWP 559

Query: 531 LPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQF 590
             I     L  L +  N+ +  +  +   I   ++V +I  N       S          
Sbjct: 560 EGITLCPSLTQLQIGSNDIRK-VNEK---ITPNISVLDIKDNPNISIDLSYVCPYIEAGM 615

Query: 591 LDLSNNQLT 599
             L  ++  
Sbjct: 616 YMLFYDKTQ 624

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  232 bits (593), Expect = 2e-65
 Identities = 116/604 (19%), Positives = 205/604 (33%), Gaps = 77/604 (12%)

Query: 129 SNLKMLNLVGNLFNNSILSSLARLSSLTSLDLSANRLKGSIDIKGPKRLSRLNNLKVFDL 188
            + K L+L  N   +    S      L  LDLS   ++             L++L    L
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIE----DGAYQSLSHLSTLIL 83

Query: 189 SGNLFNNSILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEVP 248
           +GN   +  L + + LSSL+ L+  +  L    +      L  L+EL++++N I +F++P
Sbjct: 84  TGNPIQSLALGAFSGLSSLQKLVAVETNLASLEN-FPIGHLKTLKELNVAHNLIQSFKLP 142

Query: 249 QACSGLRKLSYLHLLR---VGIRDGSKLLQSMGSFPSLN-TLDLSYNNFTETVTTTTQGF 304
           +  S L  L +L L       I      L+ +   P LN +LDLS N          +  
Sbjct: 143 EYFSNLTNLEHLDLSSNKIQSIYCTD--LRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI 200

Query: 305 PHFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHL 364
                L +L + +     + + ++   + +  ++   L      N           L  L
Sbjct: 201 ----RLHKLTLRNNF--DSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGL 254

Query: 365 QELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQ 424
             L + +  L                LD   + +I   +      LT++    L     +
Sbjct: 255 CNLTIEEFRLAY--------------LDYYLDDIIDLFN-----CLTNVSSFSLVSVTIE 295

Query: 425 IPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFL 484
               ++    +   +  +  N +                Q  +L L S            
Sbjct: 296 ---RVKDFSYNFGWQHLELVNCKFG--------------QFPTLKLKS------------ 326

Query: 485 YNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDV 544
                L+ +  +  K    F    L +   L  LS    S  G           L+ LD+
Sbjct: 327 -----LKRLTFTSNKGGNAFSEVDLPSLEFLD-LSRNGLSFKGCCSQSDFGTTSLKYLDL 380

Query: 545 SKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSS-FGNMNFLQFLDLSNNQLTGEIP 603
           S N         +G  L +L   +   + L      S F ++  L +LD+S+        
Sbjct: 381 SFNGVITMSSNFLG--LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN 438

Query: 604 EHLAMGCVSLRSLALSNNNLEGHMFSRNF-NLTNLIWLQLEGNHFVGEIPQSLSKCSSLQ 662
                G  SL  L ++ N+ + +     F  L NL +L L         P + +  SSLQ
Sbjct: 439 GIFN-GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ 497

Query: 663 GLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQL-RILQILDISDNNISG 721
            L +S+N+           L  L+ +    NHI      E       L  L+++ N+ + 
Sbjct: 498 VLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 557

Query: 722 SLPS 725
           +   
Sbjct: 558 TCEH 561

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  220 bits (563), Expect = 1e-61
 Identities = 111/558 (19%), Positives = 191/558 (34%), Gaps = 56/558 (10%)

Query: 280 FPSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDARIALNTSFLQIIGES---MPS 336
             S   LDLS+N      + +   F  F  L+ L +             I   +   +  
Sbjct: 27  PFSTKNLDLSFNPLRHLGSYS---FFSFPELQVLDLS------RCEIQTIEDGAYQSLSH 77

Query: 337 IQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSN 396
           +  L L+ + + + +         L  LQ+L   + +L     + + ++ +L+ L+V+ N
Sbjct: 78  LSTLILTGNPIQSLALGA---FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN 134

Query: 397 QLIGSISSSPLIHLTSIEDLILSDNHFQ--IPISLEPLFN-HSRLKIFDAENNEINAEII 453
            +          +LT++E L LS N  Q      L  L          D   N +N    
Sbjct: 135 LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQP 194

Query: 454 ESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNT 513
            +        +L  L L + +         +     LE  RL   +   E      + + 
Sbjct: 195 GAFK----EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSA 250

Query: 514 --KLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISM 571
              L  L++                 +L  LD   ++            L+ ++ F++  
Sbjct: 251 LEGLCNLTI--------------EEFRLAYLDYYLDDIIDLFNC-----LTNVSSFSLVS 291

Query: 572 NALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRN 631
             ++     S+      Q L+L N +        L     SL+ L  ++N          
Sbjct: 292 VTIERVKDFSY--NFGWQHLELVNCKFGQFPTLKLK----SLKRLTFTSNKGGN--AFSE 343

Query: 632 FNLTNLIWLQLEGNH--FVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHII 689
            +L +L +L L  N   F G   QS    +SL+ L LS N +   +      L  L H+ 
Sbjct: 344 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLD 402

Query: 690 MPKNHIEGPIPLE-FCQLRILQILDISDNNISGSLPSC-YDFVCIEQVHLSKNMLHGQLK 747
              ++++       F  LR L  LDIS  +   +          +E + ++ N       
Sbjct: 403 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL 462

Query: 748 EGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQL 807
              F     L  LDLS   L    P   + LS L  L ++HNN           LN LQ+
Sbjct: 463 PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQV 522

Query: 808 LDLSNNNLHGHIPSCFDN 825
           LD S N++         +
Sbjct: 523 LDYSLNHIMTSKKQELQH 540

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  217 bits (556), Expect = 1e-60
 Identities = 117/623 (18%), Positives = 199/623 (31%), Gaps = 107/623 (17%)

Query: 363 HLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNH 422
             + L ++ N LR    +   +   L++LD+S  ++      +    L+ +  LIL+ N 
Sbjct: 29  STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGA-YQSLSHLSTLILTGNP 87

Query: 423 FQIPISLEPLFNHSRLKIFDAENNEINAEIIES-HSLTTPNFQLQSLLLSSGYRDGITFP 481
            Q  ++L      S L+   A    + +        L      L+ L ++         P
Sbjct: 88  IQS-LALGAFSGLSSLQKLVAVETNLASLENFPIGHLK----TLKELNVAHNLIQSFKLP 142

Query: 482 KFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRL 541
           ++  N  +LE++ LS  K+   +   L      L Q+ L+N SL                
Sbjct: 143 EYFSNLTNLEHLDLSSNKIQSIYCTDL----RVLHQMPLLNLSL---------------- 182

Query: 542 LDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPS-SFGNMNFLQFLDLSNNQLTG 600
            D+S N      P    +I  RL    +  N    ++       +  L+   L   +   
Sbjct: 183 -DLSLNPMNFIQPGAFKEI--RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN 239

Query: 601 E--IPEHLAMGCVSLRSLALSNNNLEGHMFSRNF------NLTNLIWLQLEGNHFVGEIP 652
           E  + +        L +L +    L    +  +        LTN+    L          
Sbjct: 240 EGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD 299

Query: 653 QSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQIL 712
              S     Q L L N          L +L  L          +G        L  L+ L
Sbjct: 300 --FSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTF-----TSNKGGNAFSEVDLPSLEFL 352

Query: 713 DISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIP 772
           D+S N +S                             + F   +L  LDLS+N +   + 
Sbjct: 353 DLSRNGLSFK----------------------GCCSQSDFGTTSLKYLDLSFNGVIT-MS 389

Query: 773 DRVDGLSQLSYLILAHNNLEGEVPIQ-LCRLNQLQLLDLSNNNLHGHIPSCFDN----TT 827
               GL QL +L   H+NL+          L  L  LD+S+ +        F+       
Sbjct: 390 SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEV 449

Query: 828 LHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDL 887
           L    N+                          + F                  L+ LDL
Sbjct: 450 LKMAGNSFQENFL-------------------PDIFTELRN-------------LTFLDL 477

Query: 888 SCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQ 947
           S  +L    P    +L+ +Q LN+SHNN        +  L +++ LD S N +      +
Sbjct: 478 SQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQE 537

Query: 948 LVELNT-LAVFSVAYNNLSGKIP 969
           L    + LA  ++  N+ +    
Sbjct: 538 LQHFPSSLAFLNLTQNDFACTCE 560

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  209 bits (534), Expect = 9e-58
 Identities = 108/619 (17%), Positives = 210/619 (33%), Gaps = 62/619 (10%)

Query: 76  VVVLDLSQTHRGEYWYLNASLFTPFQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLN 135
              LDLS        +L +  F  F +L+ LDL   +I                      
Sbjct: 30  TKNLDLSFNP---LRHLGSYSFFSFPELQVLDLSRCEIQT-------------------- 66

Query: 136 LVGNLFNNSILSSLARLSSLTSLDLSANRLKGSIDIKGPKRLSRLNNLKVFDLSGNLFNN 195
                       +   LS L++L L+ N ++           S L++L+          +
Sbjct: 67  --------IEDGAYQSLSHLSTLILTGNPIQSLA----LGAFSGLSSLQKLVAVETNLAS 114

Query: 196 SILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLR 255
                +  L +L+ L +  N ++     + F +L+NLE LD+S N+I +         L 
Sbjct: 115 LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY-CTDLRVLH 173

Query: 256 KLSYLHL-LRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELY 314
           ++  L+L L + +   + +         L+ L L  N  +  V  T         L+   
Sbjct: 174 QMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTC--IQGLAGLEVHR 231

Query: 315 MDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQG---LCPLVHLQELHMAD 371
           +         +  +    ++  +  L++    ++     LD        L ++    +  
Sbjct: 232 LVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVS 291

Query: 372 NDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEP 431
             +        +     + L++ +          P + L S++ L  + N      S   
Sbjct: 292 VTIERVKD--FSYNFGWQHLELVNC----KFGQFPTLKLKSLKRLTFTSNKGGNAFSEVD 345

Query: 432 LFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLE 491
           L     L+  D   N ++ +   S S       L+ L LS  +   IT          LE
Sbjct: 346 L---PSLEFLDLSRNGLSFKGCCSQSDFGTT-SLKYLDLS--FNGVITMSSNFLGLEQLE 399

Query: 492 YVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQG 551
           ++   H  + +     +  +   L  L + +      F    +    L +L ++ N+FQ 
Sbjct: 400 HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE 459

Query: 552 HIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCV 611
           +   +I   L  LT  ++S   L+   P++F +++ LQ L++S+N               
Sbjct: 460 NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYK-CLN 518

Query: 612 SLRSLALSNNNLEG---HMFSRNFNLTNLIWLQLEGNHFVGEIPQS--LSKCSSLQGLFL 666
           SL+ L  S N++              ++L +L L  N F         L      + L +
Sbjct: 519 SLQVLDYSLNHIMTSKKQELQHFP--SSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLV 576

Query: 667 SNNSLSGKIPRWLGNLTVL 685
               +    P     + VL
Sbjct: 577 EVERMECATPSDKQGMPVL 595

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  203 bits (519), Expect = 1e-55
 Identities = 112/602 (18%), Positives = 194/602 (32%), Gaps = 80/602 (13%)

Query: 418 LSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIES-HSLTTPNFQLQSLLLSSGYRD 476
           +  N ++IP +L         K  D   N +      S  S      +LQ L LS     
Sbjct: 15  MELNFYKIPDNL-----PFSTKNLDLSFNPLRHLGSYSFFSFP----ELQVLDLSRCEIQ 65

Query: 477 GITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSH 536
            I       +   L  + L+   +            + L++L  V  +L      PI   
Sbjct: 66  TI-EDGAYQSLSHLSTLILTGNPIQSLALGAF-SGLSSLQKLVAVETNLASLENFPIGHL 123

Query: 537 KQLRLLDVSKNNFQG-HIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQF----L 591
           K L+ L+V+ N  Q   +P    + L+ L   ++S N +     +    ++ +      L
Sbjct: 124 KTLKELNVAHNLIQSFKLPEYFSN-LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSL 182

Query: 592 DLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNF-NLTNLIWLQLEGNHFVGE 650
           DLS N +    P       + L  L L NN    ++       L  L   +L    F  E
Sbjct: 183 DLSLNPMNFIQPGAF--KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNE 240

Query: 651 IPQ---SLSKCSSLQGLFLSNNSLS------GKIPRWLGNLTVLRHIIMPKNHIEGPIPL 701
                   S    L  L +    L+        I      LT +    +    IE     
Sbjct: 241 GNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDF 300

Query: 702 EFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILD 761
            +      Q L++ +               ++++  + N         +  +  +L  LD
Sbjct: 301 SY--NFGWQHLELVNCKFGQFPTLK--LKSLKRLTFTSNKGGNAF---SEVDLPSLEFLD 353

Query: 762 LSYNHLN--GNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHI 819
           LS N L+  G       G + L YL L+ N +   +      L QL+ LD  ++NL    
Sbjct: 354 LSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMS 412

Query: 820 P-SCFDN----TTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTY 874
             S F +      L   + +                            F+  +       
Sbjct: 413 EFSVFLSLRNLIYLDISHTHTRVAFN--------------------GIFNGLSS------ 446

Query: 875 QGRVPSLLSGLDLSCNRLIGHIPPQI-GNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESL 933
                  L  L ++ N    +  P I   L  +  L+LS   L    P+ F++L +++ L
Sbjct: 447 -------LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL 499

Query: 934 DLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQFATFNESSY-EGNPFLCGP 992
           ++S+N       +    LN+L V   + N++     +    F +         N F C  
Sbjct: 500 NMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTC 559

Query: 993 PL 994
             
Sbjct: 560 EH 561

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  203 bits (518), Expect = 1e-55
 Identities = 113/647 (17%), Positives = 206/647 (31%), Gaps = 92/647 (14%)

Query: 322 LNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWC 381
           +  +F +I      S + L LS + + +              LQ L ++  +++      
Sbjct: 15  MELNFYKIPDNLPFSTKNLDLSFNPLRH---LGSYSFFSFPELQVLDLSRCEIQTIEDGA 71

Query: 382 LANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIF 441
             +++ L  L ++ N +      +    L+S++ L+  + +     +  P+ +   LK  
Sbjct: 72  YQSLSHLSTLILTGNPIQSLALGA-FSGLSSLQKLVAVETNLASLEN-FPIGHLKTLKEL 129

Query: 442 DAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQH---DLEYVRLSHI 498
           +  +N I +  +  +     N  L+ L LSS     I                 + LS  
Sbjct: 130 NVAHNLIQSFKLPEYFSNLTN--LEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187

Query: 499 KMNEEFPNWLLENNTKLRQLSLVNDSLVGPF-RLPIHSHKQLRLLDVSKNNFQGHIPLEI 557
            MN   P        +L +L+L N+       +  I     L +  +    F+    LE 
Sbjct: 188 PMNFIQPGAF--KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEK 245

Query: 558 GDI-----LSRLTVFNISMNALDGS---IPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMG 609
            D      L  LT+    +  LD     I   F  +  +    L +  +           
Sbjct: 246 FDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFS---Y 302

Query: 610 CVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNN 669
               + L L N         +  +L  L +   +G         S     SL+ L LS N
Sbjct: 303 NFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGG-----NAFSEVDLPSLEFLDLSRN 357

Query: 670 SLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDF 729
            LS                       +G           L+ LD+S N +     +    
Sbjct: 358 GLS----------------------FKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGL 395

Query: 730 VCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHN 789
             +E +    + L    +   F +   L+ LD+S+ H         +GLS L  L +A N
Sbjct: 396 EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN 455

Query: 790 NLEGEV-PIQLCRLNQLQLLDLSNNNLHGHIPSCFDN----TTLHERYNNGSSLQPFETS 844
           + +    P     L  L  LDLS   L    P+ F++      L+  +NN  SL      
Sbjct: 456 SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDT---- 511

Query: 845 FVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNL- 903
                             +                  L  LD S N ++     ++ +  
Sbjct: 512 ----------------FPYKCLNS-------------LQVLDYSLNHIMTSKKQELQHFP 542

Query: 904 TKIQTLNLSHNNLAGPIPST--FSNLRNIESLDLSYNKLSWKIPYQL 948
           + +  LNL+ N+ A           +++   L +   ++    P   
Sbjct: 543 SSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDK 589

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  212 bits (543), Expect = 6e-62
 Identities = 69/294 (23%), Positives = 113/294 (38%), Gaps = 56/294 (19%)

Query: 532 PIHSHKQLRLLDVSKNNFQG--HIPLEIGDILSRLTVFNIS-MNALDGSIPSSFGNMNFL 588
                 ++  LD+S  N      IP  + + L  L    I  +N L G IP +   +  L
Sbjct: 45  TDTQTYRVNNLDLSGLNLPKPYPIPSSLAN-LPYLNFLYIGGINNLVGPIPPAIAKLTQL 103

Query: 589 QFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFV 648
            +L +++  ++G IP+ L+                          +  L+ L    N   
Sbjct: 104 HYLYITHTNVSGAIPDFLS-------------------------QIKTLVTLDFSYNALS 138

Query: 649 GEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVL-RHIIMPKNHIEGPIPLEFCQLR 707
           G +P S+S   +L G+    N +SG IP   G+ + L   + + +N + G IP  F  L 
Sbjct: 139 GTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN 198

Query: 708 ILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHL 767
            L  +D+S N + G                             F +      + L+ N L
Sbjct: 199 -LAFVDLSRNMLEGDASV------------------------LFGSDKNTQKIHLAKNSL 233

Query: 768 NGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPS 821
             ++   V     L+ L L +N + G +P  L +L  L  L++S NNL G IP 
Sbjct: 234 AFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  195 bits (498), Expect = 8e-56
 Identities = 71/378 (18%), Positives = 123/378 (32%), Gaps = 108/378 (28%)

Query: 650 EIPQSLSKCSSLQ----GLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEG--PIPLEF 703
           +I + L   ++L          N +  G +         + ++ +   ++    PIP   
Sbjct: 13  QIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSL 72

Query: 704 CQLRILQILDISD-NNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDL 762
             L  L  L I   NN+ G +P                                L  L +
Sbjct: 73  ANLPYLNFLYIGGINNLVGPIPP------------------------AIAKLTQLHYLYI 108

Query: 763 SYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSC 822
           ++ +++G IPD +  +  L  L  ++N L G +P  +  L  L  +    N + G IP  
Sbjct: 109 THTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS 168

Query: 823 FDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLL 882
           +                                                    G    L 
Sbjct: 169 Y----------------------------------------------------GSFSKLF 176

Query: 883 SGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSW 942
           + + +S NRL G IPP   NL  +  ++LS N L G     F + +N + + L+ N L++
Sbjct: 177 TSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAF 235

Query: 943 KIPYQLVELNTLAVFSVAYNNLSGKIPE-----------------------RAAQFATFN 979
            +  ++     L    +  N + G +P+                       +      F+
Sbjct: 236 DLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFD 294

Query: 980 ESSYEGNPFLCGPPLPIC 997
            S+Y  N  LCG PLP C
Sbjct: 295 VSAYANNKCLCGSPLPAC 312

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  183 bits (466), Expect = 2e-51
 Identities = 84/358 (23%), Positives = 133/358 (37%), Gaps = 71/358 (19%)

Query: 577 SIPSSFGNMNFLQ----FLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNF 632
            I    GN   L       D  N    G + +        + +L LS  NL       + 
Sbjct: 13  QIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDT-QTYRVNNLDLSGLNLPKPYPIPSS 71

Query: 633 --NLTNLIWLQLEG-NHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHII 689
             NL  L +L + G N+ VG IP +++K + L  L++++ ++SG IP +L  +  L  + 
Sbjct: 72  LANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLD 131

Query: 690 MPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVC---IEQVHLSKNMLHGQL 746
              N + G +P     L  L  +    N ISG++P  Y          + +S+N L G++
Sbjct: 132 FSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSY-GSFSKLFTSMTISRNRLTGKI 190

Query: 747 KEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQ 806
              TF N L L  +DLS N L G+             + LA N+L  ++  ++     L 
Sbjct: 191 PP-TFAN-LNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLN 247

Query: 807 LLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFT 866
            LDL NN ++G +P                                       L S +  
Sbjct: 248 GLDLRNNRIYGTLPQGLTQLKF-------------------------------LHSLN-- 274

Query: 867 TKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNL--AGPIPS 922
                               +S N L G I PQ GNL +      ++N      P+P+
Sbjct: 275 --------------------VSFNNLCGEI-PQGGNLQRFDVSAYANNKCLCGSPLPA 311

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  177 bits (452), Expect = 1e-49
 Identities = 63/290 (21%), Positives = 105/290 (36%), Gaps = 55/290 (18%)

Query: 513 TKLRQLSLVND-SLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISM 571
             L  L +    +LVGP    I    QL  L ++  N  G IP  +   +  L   + S 
Sbjct: 76  PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQ-IKTLVTLDFSY 134

Query: 572 NALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRN 631
           NAL G++P S  ++  L  +    N+++G IP+                           
Sbjct: 135 NALSGTLPPSISSLPNLVGITFDGNRISGAIPDSY------------------------- 169

Query: 632 FNLTNLI-WLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIM 690
            + + L   + +  N   G+IP + +   +L  + LS N L G      G+    + I +
Sbjct: 170 GSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHL 228

Query: 691 PKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGT 750
            KN +   +  +    + L  LD+ +N I G+LP                          
Sbjct: 229 AKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQ------------------------G 263

Query: 751 FFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLC 800
                 L  L++S+N+L G IP     L +      A+N      P+  C
Sbjct: 264 LTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGSPLPAC 312

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  153 bits (389), Expect = 3e-41
 Identities = 69/366 (18%), Positives = 112/366 (30%), Gaps = 90/366 (24%)

Query: 367 LHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLI-HLTSIEDLILSD-NHF- 423
               +    G L         +  LD+S   L         + +L  +  L +   N+  
Sbjct: 31  TDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLV 90

Query: 424 -QIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPK 482
             IP +   +   ++L      +  ++  I                            P 
Sbjct: 91  GPIPPA---IAKLTQLHYLYITHTNVSGAI----------------------------PD 119

Query: 483 FLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLL 542
           FL     L  +  S+  ++   P  +                      LP      L  +
Sbjct: 120 FLSQIKTLVTLDFSYNALSGTLPPSI--------------------SSLP-----NLVGI 154

Query: 543 DVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEI 602
               N   G IP   G      T   IS N L G IP +F N+N L F+DLS N L G+ 
Sbjct: 155 TFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDA 213

Query: 603 PEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQ 662
                                         +  N   + L  N    ++   +    +L 
Sbjct: 214 SVLF-------------------------GSDKNTQKIHLAKNSLAFDLG-KVGLSKNLN 247

Query: 663 GLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNI--S 720
           GL L NN + G +P+ L  L  L  + +  N++ G IP     L+   +   ++N     
Sbjct: 248 GLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGG-NLQRFDVSAYANNKCLCG 306

Query: 721 GSLPSC 726
             LP+C
Sbjct: 307 SPLPAC 312

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  129 bits (327), Expect = 4e-33
 Identities = 75/280 (26%), Positives = 118/280 (42%), Gaps = 33/280 (11%)

Query: 25  EGCLNHERFALLQLKLFFIDPYNYLLDWVDDEGATDCCQ--WERVSCNNT--MGRVVVLD 80
           E C   ++ ALLQ+K    +P   L  W+     TDCC   W  V C+      RV  LD
Sbjct: 1   ELCNPQDKQALLQIKKDLGNPTT-LSSWLPT---TDCCNRTWLGVLCDTDTQTYRVNNLD 56

Query: 81  LSQTHRGEYWYLNASLFTPFQQLESLDLRD-NDIAGCVENEGLERLSRLSNLKMLNLVGN 139
           LS  +  + + + +SL      L  L +   N++ G +       +++L+ L  L +   
Sbjct: 57  LSGLNLPKPYPIPSSLAN-LPYLNFLYIGGINNLVGPIPPA----IAKLTQLHYLYITHT 111

Query: 140 LFNNSILSSLARLSSLTSLDLSANRLKGSIDIKGPKRLSRLNNLKVFDLSGNLFNNSILS 199
             + +I   L+++ +L +LD S N L G++    P  +S L NL      GN  + +I  
Sbjct: 112 NVSGAIPDFLSQIKTLVTLDFSYNALSGTL----PPSISSLPNLVGITFDGNRISGAIPD 167

Query: 200 SLARLSSL-RSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLS 258
           S    S L  S+ +  NRL G I    F +L NL  +D+S N +   +        +   
Sbjct: 168 SYGSFSKLFTSMTISRNRLTGKIP-PTFANL-NLAFVDLSRNML-EGDASVLFGSDKNTQ 224

Query: 259 YLHLLRVGIRDGSKLLQ----SMGSFPSLNTLDLSYNNFT 294
            +HL           L      +G   +LN LDL  N   
Sbjct: 225 KIHL-------AKNSLAFDLGKVGLSKNLNGLDLRNNRIY 257

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  111 bits (280), Expect = 8e-27
 Identities = 60/287 (20%), Positives = 107/287 (37%), Gaps = 48/287 (16%)

Query: 147 SSLARLSSLTSLDLSANRLKGSIDIKGPKRLSRLNNLKVFDLSG-NLFNNSILSSLARLS 205
            +  +   + +LDLS   L     I  P  L+ L  L    + G N     I  ++A+L+
Sbjct: 44  DTDTQTYRVNNLDLSGLNLPKPYPI--PSSLANLPYLNFLYIGGINNLVGPIPPAIAKLT 101

Query: 206 SLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLRV 265
            L  L +    + G+I       +  L  LD SYN +         SG            
Sbjct: 102 QLHYLYITHTNVSGAIPD-FLSQIKTLVTLDFSYNAL---------SG------------ 139

Query: 266 GIRDGSKLLQSMGSFPSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDARIALNTS 325
                  L  S+ S P+L  +    N  +  +         + S  +L       ++  S
Sbjct: 140 ------TLPPSISSLPNLVGITFDGNRISGAIP------DSYGSFSKL-----FTSMTIS 182

Query: 326 FLQIIGESMPSIQYLSLSNSSVSNN--SRTLDQGLCPLVHLQELHMADNDLRGSLPWCLA 383
             ++ G+  P+   L+L+   +S N              + Q++H+A N L   L   + 
Sbjct: 183 RNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VG 241

Query: 384 NMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHF--QIPIS 428
              +L  LD+ +N++ G++    L  L  +  L +S N+   +IP  
Sbjct: 242 LSKNLNGLDLRNNRIYGTLPQG-LTQLKFLHSLNVSFNNLCGEIPQG 287

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  221 bits (564), Expect = 4e-60
 Identities = 85/647 (13%), Positives = 175/647 (27%), Gaps = 136/647 (21%)

Query: 344 NSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSIS 403
           N  +          L     +  L +A    +G +P  +  +T L++L   ++    S  
Sbjct: 305 NKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGR 364

Query: 404 SSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEINA--EIIESHSLTTP 461
                 L + +      +  ++      L    RL + D   + IN   E+      +  
Sbjct: 365 LFGDEEL-TPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRI 423

Query: 462 NFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLV 521
           + +   +   +     I   K +     L+ +  ++        +    +N  +      
Sbjct: 424 SLKDTQIGNLTNRITFI--SKAIQRLTKLQIIYFAN--------SPFTYDNIAV------ 467

Query: 522 NDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSS 581
                                +        +  L   + L  LT   +        +P  
Sbjct: 468 ----------------DWEDANSDYAKQYENEELSWSN-LKDLTDVELYNCPNMTQLPDF 510

Query: 582 FGNMNFLQFLDLSNNQLTGEIPEHLAM--------GCVSLRSLALSNNNLEGHMFSRNF- 632
             ++  LQ L+++ N+                       ++   +  NNLE    S +  
Sbjct: 511 LYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQ 570

Query: 633 NLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPK 692
            +  L  L    N       ++      L  L L  N +      +      +  +    
Sbjct: 571 KMVKLGLLDCVHNKV--RHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSH 628

Query: 693 NHIEG-PIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTF 751
           N ++  P       + ++  +D S N I                                
Sbjct: 629 NKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGR-------------------NISCSMDD 669

Query: 752 FNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLE-------GEVPIQLCRLNQ 804
           +  +    + LSYN +     +     S +S +IL++N +                    
Sbjct: 670 YKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYL 729

Query: 805 LQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFD 864
           L  +DL  N L   +   F  TTL                                    
Sbjct: 730 LTTIDLRFNKLTS-LSDDFRATTLPY---------------------------------- 754

Query: 865 FTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSH------NNLAG 918
                            LS +D+S N      P Q  N ++++   + H      N +  
Sbjct: 755 -----------------LSNMDVSYNCF-SSFPTQPLNSSQLKAFGIRHQRDAEGNRILR 796

Query: 919 PIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLS 965
             P+  +   ++  L +  N +  K+  +L     L +  +A N   
Sbjct: 797 QWPTGITTCPSLIQLQIGSNDIR-KVDEKL--TPQLYILDIADNPNI 840

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  200 bits (510), Expect = 4e-53
 Identities = 97/669 (14%), Positives = 186/669 (27%), Gaps = 135/669 (20%)

Query: 87  GEYWYLNASLFTPFQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSIL 146
           G+ W   +          + +  + ++    +  G++ L     +  L+L G      + 
Sbjct: 283 GKNWRYYSGTINNTIHSLNWNF-NKELDMWGDQPGVD-LDNNGRVTGLSLAGFGAKGRVP 340

Query: 147 SSLARLSSLTSLDLSANRLKGSIDIKGPKRLSRLNNLKVFDLSGNLFNNSILSSLARLSS 206
            ++ +L+ L  L    +    S  + G + L+   + +        +    L    RL+ 
Sbjct: 341 DAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNL 400

Query: 207 LRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVG 266
              L    NR        E   +     + +   +I N       + +  +S        
Sbjct: 401 SDLLQDAINRN------PEMKPIKKDSRISLKDTQIGNLT-----NRITFIS-------- 441

Query: 267 IRDGSKLLQSMGSFPSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDARIALNTSF 326
                   +++     L  +  + + FT              ++     +        + 
Sbjct: 442 --------KAIQRLTKLQIIYFANSPFT--------YDN--IAVDWEDANSDYAKQYENE 483

Query: 327 LQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRG---------S 377
                 ++  +  + L N     N   L   L  L  LQ L++A N              
Sbjct: 484 ELSWS-NLKDLTDVELYN---CPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTR 539

Query: 378 LPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSR 437
           L         ++I  +  N L    +S+ L  +  +  L    N  +    LE    + +
Sbjct: 540 LADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR---HLEAFGTNVK 596

Query: 438 LKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSH 497
           L     + N+I                                                 
Sbjct: 597 LTDLKLDYNQI------------------------------------------------- 607

Query: 498 IKMNEEFPNWLLENNTKLRQLSLVNDSLVG-PFRLPIHSHKQLRLLDVSKNNFQGHIPLE 556
               EE P        ++  L   ++ L   P      S   +  +D S N         
Sbjct: 608 ----EEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGS-EGRN 662

Query: 557 IGDILS-----RLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAM--- 608
           I   +        +   +S N +       F   + +  + LSNN +T  IPE+      
Sbjct: 663 ISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKD 721

Query: 609 ----GCVSLRSLALSNNNLEGHMFSRNF-NLTNLIWLQLEGNHFVGEIPQSLSKCSSLQG 663
                   L ++ L  N L           L  L  + +  N F    P      S L+ 
Sbjct: 722 GNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCF-SSFPTQPLNSSQLKA 780

Query: 664 L------FLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDN 717
                      N +  + P  +     L  + +  N I   +  +      L ILDI+DN
Sbjct: 781 FGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRK-VDEKLTPQ--LYILDIADN 837

Query: 718 NI-SGSLPS 725
              S  + S
Sbjct: 838 PNISIDVTS 846

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  196 bits (500), Expect = 6e-52
 Identities = 89/659 (13%), Positives = 175/659 (26%), Gaps = 115/659 (17%)

Query: 186 FDLSGNLFNNSILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNF 245
           F+   +++ +     L     +  L L     +G +       L+ L+ L    +     
Sbjct: 304 FNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVP-DAIGQLTELKVLSFGTHSE--T 360

Query: 246 EVPQACSGLRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTETVTTTTQGFP 305
              +          +   R            +     LN  DL  +              
Sbjct: 361 VSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINR---------- 410

Query: 306 HFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQ 365
                            N     I  +S  S++   + N +  N    + + +  L  LQ
Sbjct: 411 -----------------NPEMKPIKKDSRISLKDTQIGNLT--NRITFISKAIQRLTKLQ 451

Query: 366 ELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHF-- 423
            ++ A++                   +    +   +   S   +L  + D+ L +     
Sbjct: 452 IIYFANSPFTY-----DNIAVDWEDANSDYAKQYENEELS-WSNLKDLTDVELYNCPNMT 505

Query: 424 QIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKF 483
           Q+P  L  L     L+  +   N   +        T                        
Sbjct: 506 QLPDFLYDL---PELQSLNIACNRGISAAQLKADWTR-------------------LADD 543

Query: 484 LYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLD 543
                 ++   + +  + E   +  L+   KL  L                         
Sbjct: 544 EDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDC----------------------- 580

Query: 544 VSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIP 603
              N  + H+    G    +LT   +  N ++          + ++ L  S+N+L   IP
Sbjct: 581 -VHNKVR-HLE-AFGT-NVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLK-YIP 635

Query: 604 EHLAMG-CVSLRSLALSNNNLEGH-----MFSRNFNLTNLIWLQLEGNHFVGEIPQSLSK 657
                     + S+  S N +            ++   N   + L  N       +  + 
Sbjct: 636 NIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFAT 695

Query: 658 CSSLQGLFLSNNSLS-------GKIPRWLGNLTVLRHIIMPKNHIEG-PIPLEFCQLRIL 709
            S +  + LSNN ++               N  +L  I +  N +           L  L
Sbjct: 696 GSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYL 755

Query: 710 QILDISDNNIS------GSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLS 763
             +D+S N  S       +      F    Q     N +  Q        C +L+ L + 
Sbjct: 756 SNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPT-GITTCPSLIQLQIG 814

Query: 764 YNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSC 822
            N +   + +      QL  L +A N         +C   +  +  L  +     I  C
Sbjct: 815 SNDIR-KVDE--KLTPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQ-DIRGC 869

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  171 bits (436), Expect = 5e-44
 Identities = 74/525 (14%), Positives = 157/525 (29%), Gaps = 121/525 (23%)

Query: 464 QLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVND 523
           ++  L L+     G   P  +    +L+ +             +  E  T        + 
Sbjct: 324 RVTGLSLAGFGAKGR-VPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHR 382

Query: 524 SLVGPFRLPIHSHKQLRLLDVSKNNFQGH---IPLEIGDILS-RLTVFNISMNALDGSIP 579
             +   ++ +   ++L L D+ ++    +    P++    +S + T      N +   I 
Sbjct: 383 IRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRI-TFIS 441

Query: 580 SSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIW 639
            +   +  LQ +  +N+  T +         V              +      NL +L  
Sbjct: 442 KAIQRLTKLQIIYFANSPFTYDNIA------VDWEDANSDYAKQYENEELSWSNLKDLTD 495

Query: 640 LQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPI 699
           ++L     + ++P  L     LQ L ++ N       +   + T               +
Sbjct: 496 VELYNCPNMTQLPDFLYDLPELQSLNIACNRGIS-AAQLKADWT--------------RL 540

Query: 700 PLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMI 759
             +      +QI  +  NN+    P+                        +    + L +
Sbjct: 541 ADDEDTGPKIQIFYMGYNNLE-EFPA----------------------SASLQKMVKLGL 577

Query: 760 LDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCR-LNQLQLLDLSNNNLHGH 818
           LD  +N +     +      +L+ L L +N +E E+P   C   +Q++ L  S+N L   
Sbjct: 578 LDCVHNKVR--HLEAFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKY- 633

Query: 819 IPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRV 878
           IP+ F+  +++                                                 
Sbjct: 634 IPNIFNAKSVYV------------------------------------------------ 645

Query: 879 PSLLSGLDLSCNRLIGHIPPQIG------NLTKIQTLNLSHNNLAGPIPSTFSNLRNIES 932
              +  +D S N+ IG     I             T+ LS+N +       F+    I +
Sbjct: 646 ---MGSVDFSYNK-IGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPIST 701

Query: 933 LDLSYNKLS-------WKIPYQLVELNTLAVFSVAYNNLSGKIPE 970
           + LS N ++                   L    + +N L+  + +
Sbjct: 702 IILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS-LSD 745

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  165 bits (419), Expect = 6e-42
 Identities = 76/559 (13%), Positives = 176/559 (31%), Gaps = 99/559 (17%)

Query: 445 NNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEF 504
            + I    +E+ S+   +F +    L+      I   +      D  Y  L  I    + 
Sbjct: 226 QSGIKRSELETQSVRGESFTVIDNKLTKDANVPIQLKETAEYIKD--YKALKAIWEALDG 283

Query: 505 PNWLLENNTKLRQLSLVN-------DSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEI 557
            NW   + T    +  +N       D       + + ++ ++  L ++    +G +P  I
Sbjct: 284 KNWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAI 343

Query: 558 GDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLA 617
           G  L+ L V +   ++   S              +   +++     +        L    
Sbjct: 344 GQ-LTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402

Query: 618 LSNNNLEGH---MFSRNFNLTNLIWLQLEGNH-FVGEIPQSLSKCSSLQGLFLSNNSLSG 673
           L  + +  +      +  +  +L   Q+      +  I +++ + + LQ ++ +N+  + 
Sbjct: 403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTY 462

Query: 674 KIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIE 733
                        +             L +  L+ L  +++ +      LP         
Sbjct: 463 DNIAVDWEDANSDY-----AKQYENEELSWSNLKDLTDVELYNCPNMTQLPD-------- 509

Query: 734 QVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNG---------NIPDRVDGLSQLSYL 784
                             ++   L  L+++ N              + D  D   ++   
Sbjct: 510 ----------------FLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIF 553

Query: 785 ILAHNNLEG-EVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHE---RYNNGSSLQP 840
            + +NNLE       L ++ +L LLD  +N +  H+ +   N  L +    YN    + P
Sbjct: 554 YMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-HLEAFGTNVKLTDLKLDYNQIEEI-P 611

Query: 841 FETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPP-- 898
            +                                       + GL  S N+L  +IP   
Sbjct: 612 EDF--------------------------------CAFTDQVEGLGFSHNKL-KYIPNIF 638

Query: 899 QIGNLTKIQTLNLSHNNLAGPIPSTFS-----NLRNIESLDLSYNKLSWKIPYQLVELNT 953
              ++  + +++ S+N +     +           N  ++ LSYN++           + 
Sbjct: 639 NAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSP 698

Query: 954 LAVFSVAYNNLSGKIPERA 972
           ++   ++ N ++  IPE +
Sbjct: 699 ISTIILSNNLMT-SIPENS 716

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  161 bits (409), Expect = 1e-40
 Identities = 61/424 (14%), Positives = 118/424 (27%), Gaps = 73/424 (17%)

Query: 561 LSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSN 620
             R+T  +++     G +P + G +  L+ L    +  T               S    +
Sbjct: 322 NGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKH 381

Query: 621 NNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLG 680
                              +++       +  Q L+    LQ     N  +         
Sbjct: 382 R------------------IRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRI 423

Query: 681 NLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKN 740
           +L     I    N I   I     +L  LQI+  +++  +                    
Sbjct: 424 SLKDT-QIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNI---------------- 465

Query: 741 MLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLC 800
                         +     +  Y     N       L  L+ + L +     ++P  L 
Sbjct: 466 -------------AVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLY 512

Query: 801 RLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQIL 860
            L +LQ L+++ N          D T L +  + G  +Q F   +  +         Q +
Sbjct: 513 DLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKM 572

Query: 861 ESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPI 920
                                L  LD   N++        G   K+  L L +N +    
Sbjct: 573 VK-------------------LGLLDCVHNKV--RHLEAFGTNVKLTDLKLDYNQIEEIP 611

Query: 921 PSTFSNLRNIESLDLSYNKLSWKIP--YQLVELNTLAVFSVAYNNLSGKIPERAAQFATF 978
               +    +E L  S+NKL   IP  +    +  +     +YN +  +    +     +
Sbjct: 612 EDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDY 670

Query: 979 NESS 982
              +
Sbjct: 671 KGIN 674

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  131 bits (330), Expect = 4e-31
 Identities = 50/371 (13%), Positives = 111/371 (29%), Gaps = 45/371 (12%)

Query: 101 QQLESLDLRDNDIAGCVENEGL-----ERLSRLSNLKMLNLVGNLFNNSILS-SLARLSS 154
            +L+SL++  N      + +       +       +++  +  N       S SL ++  
Sbjct: 515 PELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVK 574

Query: 155 LTSLDLSANRLKGSIDIKGPKRLSRLNNLKVFDLSGNLFNNSILSSLARLSSLRSLLLYD 214
           L  LD   N+++        +       L    L  N          A    +  L    
Sbjct: 575 LGLLDCVHNKVRH------LEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSH 628

Query: 215 NRLEGSIDVKEFDSLSNLEELDMSYNEI----DNFEVPQACSGLRKLSYLHLLR---VGI 267
           N+L+   ++    S+  +  +D SYN+I     N             S + L        
Sbjct: 629 NKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKF 688

Query: 268 RDGSKLLQSMGSFPSLNTLDLSYNNFT----ETVTTTTQGFPHFKSLKELYMDDARIALN 323
                      +   ++T+ LS N  T     ++      + +   L  + +   +  L 
Sbjct: 689 PTE-----LFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNK--LT 741

Query: 324 TSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELH------MADNDLRGS 377
           +        ++P +  + +S     N   +          L+            N +   
Sbjct: 742 SLSDDFRATTLPYLSNMDVSY----NCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQ 797

Query: 378 LPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHF-QIPISLEPLFNHS 436
            P  +    SL  L + SN +              +  L ++DN    I ++    +  +
Sbjct: 798 WPTGITTCPSLIQLQIGSNDI----RKVDEKLTPQLYILDIADNPNISIDVTSVCPYIEA 853

Query: 437 RLKIFDAENNE 447
            + +   +  +
Sbjct: 854 GMYVLLYDKTQ 864

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  216 bits (551), Expect = 6e-60
 Identities = 107/626 (17%), Positives = 204/626 (32%), Gaps = 104/626 (16%)

Query: 103 LESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILSSLARLSSLTSLDLSA 162
            E L+   N +            SRL NL  L+L           +      L +L L+A
Sbjct: 35  TECLEFSFNVLPTIQNTT----FSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTA 90

Query: 163 NRLKGSIDIKGPKRLSRLNNLKVFDLSGNLFNNSILSSLARLSSLRSLLLYDNRLEGSID 222
           N L           LS    LK         ++     L    +L SL L  N +  SI 
Sbjct: 91  NPLIFMA----ETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHIS-SIK 145

Query: 223 VKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGIRDGSKLLQSMGSFPS 282
           + +      L+ LD   N I      +  S L++ + L                      
Sbjct: 146 LPKGFPTEKLKVLDFQNNAIHYLS-KEDMSSLQQATNL---------------------- 182

Query: 283 LNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSL 342
             +L+L+ N+          G       + L     +  L   F  +   ++ S+   + 
Sbjct: 183 --SLNLNGNDIAGIEP----GAFDSAVFQSLNFGGTQN-LLVIFKGLKNSTIQSLWLGTF 235

Query: 343 SNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSI 402
            +    + S  + +GLC +  ++ +++  +             + L+ LD+++   +  +
Sbjct: 236 EDMDDEDISPAVFEGLCEM-SVESINLQKHYFFNISSNTFHCFSGLQELDLTATH-LSEL 293

Query: 403 SSSPLIHLTSIEDLILSDNHFQ--IPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTT 460
            S  L+ L++++ L+LS N F+    IS     +                          
Sbjct: 294 PSG-LVGLSTLKKLVLSANKFENLCQISASNFPS-------------------------- 326

Query: 461 PNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSL 520
               L  L +    +        L N  +L  + LSH                 +     
Sbjct: 327 ----LTHLSIKGNTKRLELGTGCLENLENLRELDLSH---------------DDIETSDC 367

Query: 521 VNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIP- 579
            N  L             L+ L++S N     +  E      +L + +++   L      
Sbjct: 368 CNLQLRN--------LSHLQSLNLSYNEPL-SLKTEAFKECPQLELLDLAFTRLKVKDAQ 418

Query: 580 SSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNF---NLTN 636
           S F N++ L+ L+LS++ L     +    G  +L+ L L  N+       +      L  
Sbjct: 419 SPFQNLHLLKVLNLSHSLLDISSEQLFD-GLPALQHLNLQGNHFPKGNIQKTNSLQTLGR 477

Query: 637 LIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIE 696
           L  L L           + +    +  + LS+N L+      L +L  + ++ +  NHI 
Sbjct: 478 LEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHIS 536

Query: 697 GPIPLEFCQLRILQILDISDNNISGS 722
             +P     L   + +++  N +  +
Sbjct: 537 IILPSLLPILSQQRTINLRQNPLDCT 562

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  214 bits (547), Expect = 2e-59
 Identities = 102/559 (18%), Positives = 190/559 (33%), Gaps = 41/559 (7%)

Query: 284 NTLDLSYNNFTETVTTTTQGFPH--FKSLKELYMDDARIA--LNTSFLQIIGESMPSIQY 339
            T +       E         P     S + L      +    NT+F       + ++ +
Sbjct: 15  KTYNCENLGLNE--------IPGTLPNSTECLEFSFNVLPTIQNTTF-----SRLINLTF 61

Query: 340 LSLSNSSVSNNSRTLDQG-LCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQL 398
           L L+          + +        L  L +  N L       L+   +L+ L       
Sbjct: 62  LDLTR----CQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTG- 116

Query: 399 IGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSL 458
           I SI   PL +  ++E L L  NH    I L   F   +LK+ D +NN I    +    +
Sbjct: 117 ISSIDFIPLHNQKTLESLYLGSNHISS-IKLPKGFPTEKLKVLDFQNNAI--HYLSKEDM 173

Query: 459 TTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENN-TKLRQ 517
           ++   Q  +L L+    D        ++    + +     +        L  +    L  
Sbjct: 174 SSLQ-QATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWL 232

Query: 518 LSLVNDSLVGPFRLPIHSHKQLRL--LDVSKNNFQGHIPLEIGDILSRLTVFNISMNALD 575
            +  +               ++ +  +++ K+ F   I        S L   +++   L 
Sbjct: 233 GTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFN-ISSNTFHCFSGLQELDLTATHL- 290

Query: 576 GSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNF-NL 634
             +PS    ++ L+ L LS N+    + +  A    SL  L++  N     + +    NL
Sbjct: 291 SELPSGLVGLSTLKKLVLSANKFEN-LCQISASNFPSLTHLSIKGNTKRLELGTGCLENL 349

Query: 635 TNLIWLQLEGNH--FVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPK 692
            NL  L L  +           L   S LQ L LS N               L  + +  
Sbjct: 350 ENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAF 409

Query: 693 NHIEGPIPLE-FCQLRILQILDISDNNISGSLP-SCYDFVCIEQVHLSKNMLHG--QLKE 748
             ++       F  L +L++L++S + +  S          ++ ++L  N        K 
Sbjct: 410 TRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKT 469

Query: 749 GTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLL 808
            +      L IL LS+  L+         L  ++++ L+HN L       L  L  +  L
Sbjct: 470 NSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIY-L 528

Query: 809 DLSNNNLHGHIPSCFDNTT 827
           +L++N++   +PS     +
Sbjct: 529 NLASNHISIILPSLLPILS 547

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  206 bits (527), Expect = 8e-57
 Identities = 96/588 (16%), Positives = 191/588 (32%), Gaps = 38/588 (6%)

Query: 92  LNASLFTPFQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILSSLAR 151
           +  + F+    L  LDL    I   +  +          L  L L  N       ++L+ 
Sbjct: 48  IQNTTFSRLINLTFLDLTRCQIYW-IHEDT---FQSQHRLDTLVLTANPLIFMAETALSG 103

Query: 152 LSSLTSLDLSANRLKGSIDIKGPKRLSRLNNLKVFDLSGNLFNNSILSSLARLSSLRSLL 211
             +L  L      +           L     L+   L  N  ++  L        L+ L 
Sbjct: 104 PKALKHLFFIQTGISSID----FIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLD 159

Query: 212 LYDNRLEGSIDVKEFDSLSNLE--ELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGIRD 269
             +N +   +  ++  SL       L+++ N+I    +            L+        
Sbjct: 160 FQNNAIH-YLSKEDMSSLQQATNLSLNLNGNDIA--GIEPGAFDSAVFQSLNFGGTQNLL 216

Query: 270 GSKLLQSMGSFPSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDARIALNTSFLQI 329
                    +  SL        +  +      +G     S++ + +         +    
Sbjct: 217 VIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCE-MSVESINLQKHYF---FNISSN 272

Query: 330 IGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLR 389
                  +Q L L+      +   L  GL  L  L++L ++ N          +N  SL 
Sbjct: 273 TFHCFSGLQELDLTA----THLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLT 328

Query: 390 ILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQ-IPISLEPLFNHSRLKIFDAENNEI 448
            L +  N     + +  L +L ++ +L LS +  +        L N S L+  +   NE 
Sbjct: 329 HLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEP 388

Query: 449 NAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWL 508
               +++ +      QL+ L L+              N H L+ + LSH  ++      L
Sbjct: 389 L--SLKTEAFKE-CPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLD-ISSEQL 444

Query: 509 LENNTKLRQLSLVNDSLVGPFRLPIHS---HKQLRLLDVSKNNFQGHIPLEIGDILSRLT 565
            +    L+ L+L  +          +S     +L +L +S  +            L  + 
Sbjct: 445 FDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTS-LKMMN 503

Query: 566 VFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEG 625
             ++S N L  S   +  ++  +  L+L++N ++  +P  L       R++ L  N L+ 
Sbjct: 504 HVDLSHNRLTSSSIEALSHLKGIY-LNLASNHISIILPSLLP-ILSQQRTINLRQNPLDC 561

Query: 626 HMFSRNFNLTNLI-WLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLS 672
                  +    + W +                   L+G+ LS+ +LS
Sbjct: 562 -----TCSNIYFLEWYKENMQKLEDTEDTLCENPPLLRGVRLSDVTLS 604

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  198 bits (506), Expect = 5e-54
 Identities = 103/667 (15%), Positives = 209/667 (31%), Gaps = 87/667 (13%)

Query: 157 SLDLSANRLKGSIDIKGPKRLSRLNNLKVFDLSGNLFNNSILSSLARLSSLRSLLLYDNR 216
           + +     L   I    P  L   N+ +  + S N+      ++ +RL +L  L L   +
Sbjct: 16  TYNCENLGLN-EI----PGTLP--NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQ 68

Query: 217 LEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGIRDGSKLLQS 276
           +   I    F S   L+ L ++ N +       A SG + L +L  ++ GI         
Sbjct: 69  IY-WIHEDTFQSQHRLDTLVLTANPLIFMA-ETALSGPKALKHLFFIQTGISSIDF--IP 124

Query: 277 MGSFPSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDARIALNTSFLQIIGESMPS 336
           + +  +L +L L  N+ +          P                               
Sbjct: 125 LHNQKTLESLYLGSNHISSI------KLPKGFPT------------------------EK 154

Query: 337 IQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSN 396
           ++ L   N+++   S+     L        L++  ND+   +     +    + L+    
Sbjct: 155 LKVLDFQNNAIHYLSKEDMSSLQQA-TNLSLNLNGNDI-AGIEPGAFDSAVFQSLNFGGT 212

Query: 397 QLIG-SISSSPLIHLTSIEDLILSDNHF-QIPISLEPLFNHSRLKIFDAENNEINAEIIE 454
           Q +           + S+      D     I  ++        ++  + + +        
Sbjct: 213 QNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSN 272

Query: 455 SHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTK 514
           +                             +    L+ + L+   ++ E P+  L   + 
Sbjct: 273 T----------------------------FHCFSGLQELDLTATHLS-ELPSG-LVGLST 302

Query: 515 LRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNAL 574
           L++L L  +      ++   +   L  L +  N  +  +     + L  L   ++S + +
Sbjct: 303 LKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDI 362

Query: 575 DGS--IPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNF 632
           + S        N++ LQ L+LS N+      E     C  L  L L+   L+       F
Sbjct: 363 ETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFK-ECPQLELLDLAFTRLKVKDAQSPF 421

Query: 633 -NLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKI---PRWLGNLTVLRHI 688
            NL  L  L L  +       Q      +LQ L L  N            L  L  L  +
Sbjct: 422 QNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEIL 481

Query: 689 IMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKE 748
           ++    +       F  L+++  +D+S N ++ S       +    ++L+ N +   +  
Sbjct: 482 VLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIYLNLASNHISI-ILP 540

Query: 749 GTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLL 808
                      ++L  N L+         +  L +       LE            L+ +
Sbjct: 541 SLLPILSQQRTINLRQNPLDCTC----SNIYFLEWYKENMQKLEDTEDTLCENPPLLRGV 596

Query: 809 DLSNNNL 815
            LS+  L
Sbjct: 597 RLSDVTL 603

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  195 bits (497), Expect = 7e-53
 Identities = 110/623 (17%), Positives = 195/623 (31%), Gaps = 89/623 (14%)

Query: 389 RILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEI 448
           +  +  +  L    +  P     S E L  S N     I          L   D    +I
Sbjct: 15  KTYNCENLGL----NEIPGTLPNSTECLEFSFNVLPT-IQNTTFSRLINLTFLDLTRCQI 69

Query: 449 NAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWL 508
               I   +                            +QH L+ + L+   +       L
Sbjct: 70  --YWIHEDTF--------------------------QSQHRLDTLVLTANPLIFMAETAL 101

Query: 509 LENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFN 568
                 L+ L  +   +     +P+H+ K L  L +  N+    I L  G    +L V +
Sbjct: 102 -SGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISS-IKLPKGFPTEKLKVLD 159

Query: 569 ISMNALDGSIPSSFGNMNFLQ--FLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGH 626
              NA+         ++       L+L+ N + G  P   A      +SL          
Sbjct: 160 FQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPG--AFDSAVFQSLNFGGTQNLLV 217

Query: 627 MFS--RNFNLTNLIWLQLEGNHFVGEIPQSLSKCS--SLQGLFLSNNSLSGKIPRWLGNL 682
           +F   +N  + +L     E        P         S++ + L  +             
Sbjct: 218 IFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCF 277

Query: 683 TVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLP-SCYDFVCIEQVHLSKNM 741
           + L+ + +   H+   +P     L  L+ L +S N        S  +F  +  + +  N 
Sbjct: 278 SGLQELDLTATHLSE-LPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNT 336

Query: 742 LHGQLKEGTFFNCLTLMILDLSYNHLN--GNIPDRVDGLSQLSYLILAHNNLEGEVPIQL 799
              +L  G   N   L  LDLS++ +        ++  LS L  L L++N          
Sbjct: 337 KRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAF 396

Query: 800 CRLNQLQLLDLSNNNLHGHIP-SCFDN----TTLHERYNNGSSLQPFETSFVIMGGMDVD 854
               QL+LLDL+   L      S F N      L+  ++                     
Sbjct: 397 KECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSE-------------- 442

Query: 855 PKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRL---IGHIPPQIGNLTKIQTLNL 911
                 + FD                 L  L+L  N            +  L +++ L L
Sbjct: 443 ------QLFDGLPA-------------LQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVL 483

Query: 912 SHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPER 971
           S  +L+      F++L+ +  +DLS+N+L+      L  L  +   ++A N++S  +P  
Sbjct: 484 SFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSL 542

Query: 972 AAQFATFNESSYEGNPFLCGPPL 994
               +     +   NP  C    
Sbjct: 543 LPILSQQRTINLRQNPLDCTCSN 565

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  142 bits (359), Expect = 3e-35
 Identities = 82/373 (21%), Positives = 140/373 (37%), Gaps = 19/373 (5%)

Query: 75  RVVVLDLSQTHRGEYWYLNASLFTPFQQLESLDLRDNDIAGCVENEGLERLSRLSNLKML 134
               L+   T             +  Q L      D D      +  +       +++ +
Sbjct: 203 VFQSLNFGGTQNLLVI-FKGLKNSTIQSLWLGTFEDMDDED--ISPAVFEGLCEMSVESI 259

Query: 135 NLVGNLFNNSILSSLARLSSLTSLDLSANRLKGSIDIKGPKRLSRLNNLKVFDLSGNLFN 194
           NL  + F N   ++    S L  LDL+A  L      + P  L  L+ LK   LS N F 
Sbjct: 260 NLQKHYFFNISSNTFHCFSGLQELDLTATHLS-----ELPSGLVGLSTLKKLVLSANKFE 314

Query: 195 NSILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEV-PQACSG 253
           N    S +   SL  L +  N     +     ++L NL ELD+S+++I+  +        
Sbjct: 315 NLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRN 374

Query: 254 LRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTETVTTTTQGFPHFKSLKEL 313
           L  L  L+L            ++    P L  LDL++         +   F +   LK L
Sbjct: 375 LSHLQSLNLSYNEPLSLKT--EAFKECPQLELLDLAFTRLKVKDAQSP--FQNLHLLKVL 430

Query: 314 YMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADND 373
            +  + +       + + + +P++Q+L+L  +     +      L  L  L+ L ++  D
Sbjct: 431 NLSHSLL---DISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCD 487

Query: 374 LRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLF 433
           L         ++  +  +D+S N+L  S S   L HL  I  L L+ NH  I I    L 
Sbjct: 488 LSSIDQHAFTSLKMMNHVDLSHNRLT-SSSIEALSHLKGIY-LNLASNHISI-ILPSLLP 544

Query: 434 NHSRLKIFDAENN 446
             S+ +  +   N
Sbjct: 545 ILSQQRTINLRQN 557

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  205 bits (523), Expect = 3e-56
 Identities = 97/555 (17%), Positives = 180/555 (32%), Gaps = 35/555 (6%)

Query: 100 FQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILSSLARLSSLTSLD 159
               +++DL  N +            S  S L+ L+L           +   L  L++L 
Sbjct: 31  PSSTKNIDLSFNPLKILKSYS----FSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLI 86

Query: 160 LSANRLKGSIDIKGPKRLSRLNNLKVFDLSGNLFNNSILSSLARLSSLRSLLLYDNRLEG 219
           L+ N ++       P   S L +L+          +     + +L +L+ L +  N +  
Sbjct: 87  LTGNPIQSFS----PGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHS 142

Query: 220 SIDVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLS----YLHLLRVGIRDGSKLLQ 275
                 F +L+NL  +D+SYN I           LR+       L +    I     +  
Sbjct: 143 CKLPAYFSNLTNLVHVDLSYNYIQTIT-VNDLQFLRENPQVNLSLDMSLNPI---DFIQD 198

Query: 276 SMGSFPSLNTLDLSYNNFTETVTTTT-QGFPHFKSLKELYMDDARIALNTSFLQIIGESM 334
                  L+ L L  N  +  +  T  Q        + +  +         F   I E +
Sbjct: 199 QAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGL 258

Query: 335 PSIQYLSLSNSSVSNNSRTLDQG-LCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDV 393
             +       +    N  + D      L ++  + +A   +       +      + L +
Sbjct: 259 CDVTIDEFRLTY--TNDFSDDIVKFHCLANVSAMSLAGVSI--KYLEDVPKHFKWQSLSI 314

Query: 394 SSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEII 453
              Q    +   P + L  ++ L L+ N   I            L   D   N ++    
Sbjct: 315 IRCQ----LKQFPTLDLPFLKSLTLTMNKGSIS---FKKVALPSLSYLDLSRNALSFSGC 367

Query: 454 ES-HSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENN 512
            S   L T +  L+ L LS  +   I          +L+++   H  +          + 
Sbjct: 368 CSYSDLGTNS--LRHLDLS--FNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSL 423

Query: 513 TKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMN 572
            KL  L +   +    F         L  L ++ N+F+ +    +    + LT  ++S  
Sbjct: 424 EKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKC 483

Query: 573 ALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNF 632
            L+      F  ++ LQ L++S+N L      H      SL +L  S N +E        
Sbjct: 484 QLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYN-QLYSLSTLDCSFNRIETSKGILQH 542

Query: 633 NLTNLIWLQLEGNHF 647
              +L +  L  N  
Sbjct: 543 FPKSLAFFNLTNNSV 557

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  202 bits (515), Expect = 3e-55
 Identities = 111/603 (18%), Positives = 203/603 (33%), Gaps = 87/603 (14%)

Query: 129 SNLKMLNLVGNLFNNSILSSLARLSSLTSLDLSANRLKGSIDIKGPKRLSRLNNLKVFDL 188
           S+ K ++L  N        S +  S L  LDLS   ++        K    L++L    L
Sbjct: 32  SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIE----DKAWHGLHHLSNLIL 87

Query: 189 SGNLFNNSILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEVP 248
           +GN   +    S + L+SL +L+  + +L  S++      L  L++L++++N I + ++P
Sbjct: 88  TGNPIQSFSPGSFSGLTSLENLVAVETKLA-SLESFPIGQLITLKKLNVAHNFIHSCKLP 146

Query: 249 QACSGLRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTETVTTTTQGFPHFK 308
              S L                           +L  +DLSYN                 
Sbjct: 147 AYFSNL--------------------------TNLVHVDLSYNYIQT------------- 167

Query: 309 SLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELH 368
                        +  + LQ + E+      L +S     N    +       + L EL 
Sbjct: 168 -------------ITVNDLQFLRENPQVNLSLDMSL----NPIDFIQDQAFQGIKLHELT 210

Query: 369 MADNDLRGSLPW-CLANMTSLRILDVSSNQL-----IGSISSSPLIHLTSIEDLILSDNH 422
           +  N    ++   CL N+  L +  +   +      +     S +  L  +        +
Sbjct: 211 LRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTY 270

Query: 423 FQI-PISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFP 481
                  +      + +         I    +E       +F+ QSL +           
Sbjct: 271 TNDFSDDIVKFHCLANVSAMSLAGVSIK--YLEDV---PKHFKWQSLSIIRCQLKQFPTL 325

Query: 482 KFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSL--VGPFRLPIHSHKQL 539
              +    L+ + L+  K +  F    L +   L  L L  ++L   G           L
Sbjct: 326 DLPF----LKSLTLTMNKGSISFKKVALPS---LSYLDLSRNALSFSGCCSYSDLGTNSL 378

Query: 540 RLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIP-SSFGNMNFLQFLDLSNNQL 598
           R LD+S N     +       L  L   +   + L      S+F ++  L +LD+S    
Sbjct: 379 RHLDLSFNGAI-IMSANFMG-LEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNT 436

Query: 599 TGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNF-NLTNLIWLQLEGNHFVGEIPQSLSK 657
             +       G  SL +L ++ N+ + +  S  F N TNL +L L               
Sbjct: 437 KIDFDGIFL-GLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDT 495

Query: 658 CSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDN 717
              LQ L +S+N+L          L  L  +    N IE    +     + L   ++++N
Sbjct: 496 LHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNN 555

Query: 718 NIS 720
           +++
Sbjct: 556 SVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  200 bits (510), Expect = 2e-54
 Identities = 100/562 (17%), Positives = 184/562 (32%), Gaps = 65/562 (11%)

Query: 280 FPSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDARIALNTSFLQIIGES---MPS 336
             S   +DLS+N      + +   F +F  L+ L +             I  ++   +  
Sbjct: 31  PSSTKNIDLSFNPLKILKSYS---FSNFSELQWLDLS------RCEIETIEDKAWHGLHH 81

Query: 337 IQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSN 396
           +  L L+ + + + S         L  L+ L   +  L     + +  + +L+ L+V+ N
Sbjct: 82  LSNLILTGNPIQSFSPGS---FSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHN 138

Query: 397 QLIGSISSSPLIHLTSIEDLILSDNHFQ--IPISLEPLFN-HSRLKIFDAENNEINAEII 453
            +      +   +LT++  + LS N+ Q      L+ L          D   N I  + I
Sbjct: 139 FIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPI--DFI 196

Query: 454 ESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNT 513
           +  +      +L  L L   +         L N   L   RL   +  +E    + E + 
Sbjct: 197 QDQAFQ--GIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSI 254

Query: 514 -------KLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTV 566
                   + +  L   +      +  H    +  + ++  + +    LE      +   
Sbjct: 255 MEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKY---LEDVPKHFKWQS 311

Query: 567 FNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLE-- 624
            +I    L         ++ FL+ L L+ N+ +    +   +   SL  L LS N L   
Sbjct: 312 LSIIRCQLKQF---PTLDLPFLKSLTLTMNKGSISFKK---VALPSLSYLDLSRNALSFS 365

Query: 625 GHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRW-LGNLT 683
           G     +    +L  L L  N  +  +  +      LQ L   +++L          +L 
Sbjct: 366 GCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLE 424

Query: 684 VLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLH 743
            L ++ +   + +      F  L  L  L ++ N+   +  S                  
Sbjct: 425 KLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLS------------------ 466

Query: 744 GQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLN 803
                  F N   L  LDLS   L        D L +L  L ++HNNL         +L 
Sbjct: 467 -----NVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLY 521

Query: 804 QLQLLDLSNNNLHGHIPSCFDN 825
            L  LD S N +          
Sbjct: 522 SLSTLDCSFNRIETSKGILQHF 543

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  182 bits (464), Expect = 1e-48
 Identities = 108/622 (17%), Positives = 204/622 (32%), Gaps = 115/622 (18%)

Query: 363 HLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNH 422
             + + ++ N L+    +  +N + L+ LD+S  + I +I       L  + +LIL+ N 
Sbjct: 33  STKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCE-IETIEDKAWHGLHHLSNLILTGNP 91

Query: 423 FQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPK 482
            Q   S       + L+   A   ++ +  +ES  +      L+ L ++           
Sbjct: 92  IQS-FSPGSFSGLTSLENLVAVETKLAS--LESFPIG-QLITLKKLNVA----------- 136

Query: 483 FLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLL 542
             +N        +   K+   F N                                L  +
Sbjct: 137 --HNF-------IHSCKLPAYFSNL-----------------------------TNLVHV 158

Query: 543 DVSKNNFQGHIPLEIGDILSRLTVF----NISMNALDGSIPSSFGNMNFLQFLDLSNNQL 598
           D+S N  Q  I +     L          ++S+N +D     +F  +  L  L L  N  
Sbjct: 159 DLSYNYIQ-TITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIK-LHELTLRGNFN 216

Query: 599 TGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLT--------NLIWLQLEGNHFVGE 650
           +  I +        L    L     +       F  +         +   +L   +   +
Sbjct: 217 SSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSD 276

Query: 651 IPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQ 710
                   +++  + L+  S+       +      + + + +  ++         L  L+
Sbjct: 277 DIVKFHCLANVSAMSLAGVSIKYLED--VPKHFKWQSLSIIRCQLKQ---FPTLDLPFLK 331

Query: 711 ILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFN--CLTLMILDLSYNHLN 768
            L ++ N  S S         +  + LS+N L       ++ +    +L  LDLS+N   
Sbjct: 332 SLTLTMNKGSISFKKV-ALPSLSYLDLSRNALSF-SGCCSYSDLGTNSLRHLDLSFNGAI 389

Query: 769 GNIPDRVDGLSQLSYLILAHNNLEGEVPIQ-LCRLNQLQLLDLSNNNLHGHIPSCFDN-- 825
             +     GL +L +L   H+ L+          L +L  LD+S  N        F    
Sbjct: 390 I-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLT 448

Query: 826 --TTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLS 883
              TL    N+                            F  TT              L+
Sbjct: 449 SLNTLKMAGNSFKDNTL-------------------SNVFANTTN-------------LT 476

Query: 884 GLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWK 943
            LDLS  +L          L ++Q LN+SHNNL     S ++ L ++ +LD S+N++   
Sbjct: 477 FLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETS 536

Query: 944 IPYQLVELNTLAVFSVAYNNLS 965
                    +LA F++  N+++
Sbjct: 537 KGILQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  178 bits (453), Expect = 4e-47
 Identities = 112/640 (17%), Positives = 192/640 (30%), Gaps = 99/640 (15%)

Query: 376 GSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNH 435
           GSL  C+  + ++        +L    S  P    +S +++ LS N  +I +      N 
Sbjct: 2   GSLNPCIEVVPNIT-YQCMDQKL----SKVPDDIPSSTKNIDLSFNPLKI-LKSYSFSNF 55

Query: 436 SRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRL 495
           S L+  D    EI                                 K  +  H L  + L
Sbjct: 56  SELQWLDLSRCEIETIE----------------------------DKAWHGLHHLSNLIL 87

Query: 496 SHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPL 555
           +   +   F        T L  L  V   L      PI     L+ L+V+ N        
Sbjct: 88  TGNPIQS-FSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLP 146

Query: 556 EIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQF----LDLSNNQLTGEIPEHLAMGCV 611
                L+ L   ++S N +     +    +         LD+S N +     +  A   +
Sbjct: 147 AYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQ--AFQGI 204

Query: 612 SLRSLALSNNNLEGHMFSRNF-NLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLF----- 665
            L  L L  N    ++      NL  L   +L    F  E    + + S ++GL      
Sbjct: 205 KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTID 264

Query: 666 ---LSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGS 722
              L+  +           L  +  + +    I+    +        Q L I    +   
Sbjct: 265 EFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFK--WQSLSIIRCQLK-Q 321

Query: 723 LPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLN--GNIPDRVDGLSQ 780
            P+  D   ++ + L+ N               +L  LDLS N L+  G       G + 
Sbjct: 322 FPT-LDLPFLKSLTLTMNKGSISF---KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNS 377

Query: 781 LSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIP-SCFDN----TTLHERYNNG 835
           L +L L+ N     +      L +LQ LD  ++ L      S F +      L   Y N 
Sbjct: 378 LRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNT 436

Query: 836 SSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGH 895
                                      F   T              L+ L ++ N    +
Sbjct: 437 KIDFD--------------------GIFLGLTS-------------LNTLKMAGNSFKDN 463

Query: 896 IPPQI-GNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTL 954
               +  N T +  L+LS   L       F  L  ++ L++S+N L +       +L +L
Sbjct: 464 TLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSL 523

Query: 955 AVFSVAYNNLSGKIPERAAQFATFNESSYEGNPFLCGPPL 994
           +    ++N +            +    +   N   C    
Sbjct: 524 STLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVACICEH 563

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  149 bits (378), Expect = 1e-37
 Identities = 86/534 (16%), Positives = 167/534 (31%), Gaps = 95/534 (17%)

Query: 78  VLDLSQTHRGEYWYLNASLFTPFQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLV 137
            L   +T       L +        L+ L++  N I  C         S L+NL  ++L 
Sbjct: 108 NLVAVETK---LASLESFPIGQLITLKKLNVAHNFIHSCKLPAY---FSNLTNLVHVDLS 161

Query: 138 GNLFNNSILSSLARLSSLT----SLDLSANRLKGSIDIKGPKRLSRLNNLKVFDLSGNLF 193
            N      ++ L  L        SLD+S N +          +  +   L    L GN  
Sbjct: 162 YNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFI-----QDQAFQGIKLHELTLRGNFN 216

Query: 194 NNSILS-SLARLSSLRSLLLYDNRLEG-----SIDVKEFDSLSNL--EELDMSYNEIDNF 245
           +++I+   L  L+ L    L     +        +    + L ++  +E  ++Y      
Sbjct: 217 SSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTND-FS 275

Query: 246 EVPQACSGLRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTETVTTTTQGFP 305
           +       L  +S + L  V I+     L+ +       +L +      +          
Sbjct: 276 DDIVKFHCLANVSAMSLAGVSIKY----LEDVPKHFKWQSLSIIRCQLKQFP------TL 325

Query: 306 HFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQ 365
               LK L +   + +++   +     ++PS+ YL LS +++S +       L     L+
Sbjct: 326 DLPFLKSLTLTMNKGSISFKKV-----ALPSLSYLDLSRNALSFSGCCSYSDLG-TNSLR 379

Query: 366 ELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQI 425
            L ++ N     +      +  L+ LD   + L      S  + L  +  L +S  + +I
Sbjct: 380 HLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKI 438

Query: 426 PISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLY 485
                     + L                                               
Sbjct: 439 -DFDGIFLGLTSLNTLK------------------------------------------- 454

Query: 486 NQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVS 545
                    ++     +   + +  N T L  L L    L         +  +L+LL++S
Sbjct: 455 ---------MAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMS 505

Query: 546 KNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLT 599
            NN    +     + L  L+  + S N ++ S          L F +L+NN + 
Sbjct: 506 HNNLL-FLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  132 bits (335), Expect = 3e-32
 Identities = 82/421 (19%), Positives = 142/421 (33%), Gaps = 47/421 (11%)

Query: 102 QLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILSSLARLSSLTSLDLS 161
           +L  L LR N  +  +    L+ L+ L   +++        N  +   + +  L  + + 
Sbjct: 205 KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTID 264

Query: 162 ANRL-KGSIDIKGPKRLSRLNNLKVFDLSGNLFNNSILSSLARLSSLRSLLLYDNRLEGS 220
             RL   +       +   L N+    L+G   +   L  + +    +SL +   +L+  
Sbjct: 265 EFRLTYTNDFSDDIVKFHCLANVSAMSLAGV--SIKYLEDVPKHFKWQSLSIIRCQLKQF 322

Query: 221 IDVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGIRDGSKLLQSMGSF 280
                   L  L+ L ++ N+     +      L  LSYL L R  +        S    
Sbjct: 323 ----PTLDLPFLKSLTLTMNKGS---ISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGT 375

Query: 281 PSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDARIALNTSFLQIIGESMPSIQYL 340
            SL  LDLS+N         +  F   + L+ L    + +   T F      S+  + YL
Sbjct: 376 NSLRHLDLSFNGAI----IMSANFMGLEELQHLDFQHSTLKRVTEF--SAFLSLEKLLYL 429

Query: 341 SLSNSSVSNNSRTLDQG-LCPLVHLQELHMADNDLRGSLPWC-LANMTSLRILDVSSNQL 398
            +S      N++    G    L  L  L MA N  + +      AN T+L  LD+S  Q 
Sbjct: 430 DISY----TNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQ- 484

Query: 399 IGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSL 458
           +  IS      L  ++ L +S N+    +          L   D   N I          
Sbjct: 485 LEQISWGVFDTLHRLQLLNMSHNNLLF-LDSSHYNQLYSLSTLDCSFNRIETSKGILQHF 543

Query: 459 TTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQL 518
                 L    L++             N        ++ I  +++F  W+ E    L  +
Sbjct: 544 PK---SLAFFNLTN-------------NS-------VACICEHQKFLQWVKEQKQFLVNV 580

Query: 519 S 519
            
Sbjct: 581 E 581

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  192 bits (489), Expect = 1e-50
 Identities = 118/645 (18%), Positives = 221/645 (34%), Gaps = 49/645 (7%)

Query: 110 DNDIAGCVENEGLERL-SRLSNLKMLNLVGNLFNNSILSSLARLSSLTSLDLSANRLKGS 168
           D  IA       L ++   L+  + L L  N       SS   L  L  L+L +     +
Sbjct: 5   DGRIAFY-RFCNLTQVPQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLT 63

Query: 169 IDIKGPKRLSRLNNLKVFDLSGNLFNNSILSSLARLSSLRSLLLYDNRL-EGSIDVKEFD 227
           ID    +    L NL++ DL  +        +   L  L  L LY   L +  +    F 
Sbjct: 64  ID---KEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFR 120

Query: 228 SLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLD 287
           +L  L  LD+S N+I +  +  +   L  L  +      I    +         +L+   
Sbjct: 121 NLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFS 180

Query: 288 LSYNNFTETVTTTTQGFP---HFKSLKELYMDDARIALNTSFLQIIGES---------MP 335
           L+ N+    V+              L+ L +      ++ +       S           
Sbjct: 181 LAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAH 240

Query: 336 SIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSS 395
            I        ++ +  +    GL     ++ L ++   +          +  L++L+++ 
Sbjct: 241 HIMGAGFGFHNIKDPDQNTFAGLARS-SVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAY 299

Query: 396 NQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIES 455
           N+ I  I+      L +++ L LS N     +     +   ++   D + N I   II+ 
Sbjct: 300 NK-INKIADEAFYGLDNLQVLNLSYNLLGE-LYSSNFYGLPKVAYIDLQKNHIA--IIQD 355

Query: 456 HSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKL 515
            +       LQ+L L     + +T   F+ +   +  + LS  K+       L  N   L
Sbjct: 356 QTFKFLEK-LQTLDLRD---NALTTIHFIPS---IPDIFLSGNKLVTLPKINLTANLIHL 408

Query: 516 RQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALD 575
            +  L N  ++            L++L +++N F      +       L    +  N L 
Sbjct: 409 SENRLENLDILYFLL----RVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQ 464

Query: 576 GSIPSS-----FGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSR 630
            +  +      F  ++ LQ L L++N L   +P  +     +LR L+L++N L   + S 
Sbjct: 465 LAWETELCWDVFEGLSHLQVLYLNHNYLN-SLPPGVFSHLTALRGLSLNSNRL--TVLSH 521

Query: 631 NFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIP-RWLGNLTVLRHII 689
           N    NL  L +  N  +   P       SL  L +++N    +       N     ++ 
Sbjct: 522 NDLPANLEILDISRNQLLAPNPDVF---VSLSVLDITHNKFICECELSTFINWLNHTNVT 578

Query: 690 MPKN--HIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCI 732
           +      I    P  F  + +   L     +    L S    + I
Sbjct: 579 IAGPPADIYCVYPDSFSGVSLFS-LSTEGCDEEEVLKSLKFSLFI 622

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  179 bits (455), Expect = 2e-46
 Identities = 109/753 (14%), Positives = 213/753 (28%), Gaps = 136/753 (18%)

Query: 341  SLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIG 400
            S            L Q    L   + L ++ N +R         +  L++L++ S     
Sbjct: 3    SFDGRIAFYRFCNLTQVPQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPL 62

Query: 401  SISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTT 460
            +I      +L ++  L L  +     +  +       L         ++  +++      
Sbjct: 63   TIDKEAFRNLPNLRILDLGSSKIYF-LHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFR- 120

Query: 461  PNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSL 520
                L  L LS      +         + L+ +  S  ++                   +
Sbjct: 121  NLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIF-----------------LV 163

Query: 521  VNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPS 580
                L           K L    ++ N+    + ++ G  ++                  
Sbjct: 164  CEHELEPL------QGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMV------------ 205

Query: 581  SFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWL 640
                   L+ LD+S N  T +I                 +N +            +++  
Sbjct: 206  -------LEILDVSGNGWTVDITG-------------NFSNAISKSQAFSLILAHHIMGA 245

Query: 641  QLEGNHFVGEIPQSLS--KCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGP 698
                ++       + +    SS++ L LS+  +     R    L  L+ + +  N I   
Sbjct: 246  GFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKI 305

Query: 699  IPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLM 758
                F  L  LQ+L++S N +                         +L    F+    + 
Sbjct: 306  ADEAFYGLDNLQVLNLSYNLLG------------------------ELYSSNFYGLPKVA 341

Query: 759  ILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGH 818
             +DL  NH+          L +L  L L  N L       +  +  +  + LS N L   
Sbjct: 342  YIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT-----TIHFIPSIPDIFLSGNKLVTL 396

Query: 819  IPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRV 878
                     +H   N   +L         +  +        L+         +     + 
Sbjct: 397  PKINLTANLIHLSENRLENLDIL----YFLLRV------PHLQILILNQNRFSSCSGDQT 446

Query: 879  PSLLSG---LDLSCNRLIGHIPPQI-----GNLTKIQTLNLSHNNLAGPIPSTFSNLRNI 930
            PS       L L  N L      ++       L+ +Q L L+HN L    P  FS+L  +
Sbjct: 447  PSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTAL 506

Query: 931  ESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQFATFNESSYEGNPFLC 990
              L L+ N+L+      L     L +  ++ N L    P+    F + +      N F+C
Sbjct: 507  RGLSLNSNRLTVLSHNDL--PANLEILDISRNQLLAPNPD---VFVSLSVLDITHNKFIC 561

Query: 991  ------------GPPLPICISPTTMPEASPSNEGDNNLIDMDI-------------FFIT 1025
                           + I   P  +    P +    +L  +               F + 
Sbjct: 562  ECELSTFINWLNHTNVTIAGPPADIYCVYPDSFSGVSLFSLSTEGCDEEEVLKSLKFSLF 621

Query: 1026 FTTSYVIVIFGIVAVLYVNARWRRRWFYLVEMW 1058
               +  + +F +  +     R      Y     
Sbjct: 622  IVCTVTLTLFLMTILTVTKFRGFCFICYKTAQR 654

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  171 bits (434), Expect = 8e-44
 Identities = 132/664 (19%), Positives = 216/664 (32%), Gaps = 134/664 (20%)

Query: 178 SRLNNLKVFDLSGNLFNNSILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDM 237
             LN  +   LS N       SS   L  L+ L L       +ID + F +L NL  LD+
Sbjct: 21  QVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDL 80

Query: 238 SYNEIDNFEVPQACSGLRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTETV 297
             ++I     P A  GL  L  L L   G+ D         +  +L  LDLS N      
Sbjct: 81  GSSKIYFLH-PDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIR--- 136

Query: 298 TTTTQGFPHFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQG 357
                                 + L+ SF       + S++ +  S++ +        + 
Sbjct: 137 ---------------------SLYLHPSF-----GKLNSLKSIDFSSNQIFLVCEHELEP 170

Query: 358 LCPLVHLQELHMADNDLRGSLPWCLANM------TSLRILDVSSNQLIGSISSSPLIHLT 411
           L     L    +A N L   +               L ILDVS N     I+ +    ++
Sbjct: 171 LQGK-TLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAIS 229

Query: 412 SIEDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLS 471
             +   L   H               +       + I  +  ++         ++ L LS
Sbjct: 230 KSQAFSLILAH--------------HIMGAGFGFHNIK-DPDQNTFAGLARSSVRHLDLS 274

Query: 472 SGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRL 531
            G+   +   +      DL+ + L++ K+N +  +        L+ L+L           
Sbjct: 275 HGFVFSLN-SRVFETLKDLKVLNLAYNKIN-KIADEAFYGLDNLQVLNL----------- 321

Query: 532 PIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFL 591
              S+  L  L    +NF G         L ++   ++  N +      +F  +  LQ L
Sbjct: 322 ---SYNLLGELY--SSNFYG---------LPKVAYIDLQKNHIAIIQDQTFKFLEKLQTL 367

Query: 592 DLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEG-HMFSRNFNLTNLIWLQLEGNHFVGE 650
           DL +N LT  I         S+  + LS N L      +   NL +L   +LE       
Sbjct: 368 DLRDNALT-TIH-----FIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLD---- 417

Query: 651 IPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQ 710
           I   L +   LQ L L+ N  S                                +   L+
Sbjct: 418 ILYFLLRVPHLQILILNQNRFSSCSGDQT-----------------------PSENPSLE 454

Query: 711 ILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGN 770
            L + +N +  +  +                    L    F     L +L L++N+LN  
Sbjct: 455 QLFLGENMLQLAWETE-------------------LCWDVFEGLSHLQVLYLNHNYLNSL 495

Query: 771 IPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHE 830
            P     L+ L  L L  N L       L     L++LD+S N L    P  F + ++ +
Sbjct: 496 PPGVFSHLTALRGLSLNSNRLTVLSHNDL--PANLEILDISRNQLLAPNPDVFVSLSVLD 553

Query: 831 RYNN 834
             +N
Sbjct: 554 ITHN 557

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  134 bits (338), Expect = 4e-32
 Identities = 107/608 (17%), Positives = 190/608 (31%), Gaps = 116/608 (19%)

Query: 78  VLDLSQTHRGEYWYLNASLFTPFQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLV 137
            L L          L    F   + L  LDL  N I     +       +L++LK ++  
Sbjct: 101 ELRLYFC-GLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPS---FGKLNSLKSIDFS 156

Query: 138 GNLFNNSILSSLARLS--SLTSLDLSANRLKG--SIDIKGPKRLSRLNNLKVFDLSGNLF 193
            N         L  L   +L+   L+AN L    S+D        R   L++ D+SGN +
Sbjct: 157 SNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGW 216

Query: 194 NNSILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQACSG 253
              I  + +   S                        ++      ++ I + +     +G
Sbjct: 217 TVDITGNFSNAIS-------------KSQAFSLILAHHIMGAGFGFHNIKDPD-QNTFAG 262

Query: 254 LRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTETVTTTTQGFPHFKSLKEL 313
           L +                         S+  LDLS+     ++ +    F   K LK L
Sbjct: 263 LARS------------------------SVRHLDLSHGFVF-SLNSRV--FETLKDLKVL 295

Query: 314 YMDDARI-ALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQG-LCPLVHLQELHMAD 371
            +   +I  +           + ++Q L+LS     N    L       L  +  + +  
Sbjct: 296 NLAYNKINKIADEAFY----GLDNLQVLNLSY----NLLGELYSSNFYGLPKVAYIDLQK 347

Query: 372 NDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEP 431
           N +          +  L+ LD+  N L      + +  + SI D+ LS N          
Sbjct: 348 NHIAIIQDQTFKFLEKLQTLDLRDNAL------TTIHFIPSIPDIFLSGNKL-------- 393

Query: 432 LFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLE 491
                                    +L   N     + LS    + +    FL     L+
Sbjct: 394 ------------------------VTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQ 429

Query: 492 YVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSH-----KQLRLLDVSK 546
            + L+  + +    +     N  L QL L  + L   +   +          L++L ++ 
Sbjct: 430 ILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNH 489

Query: 547 NNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHL 606
           N     +P  +   L+ L   +++ N L     +       L+ LD+S NQL    P+  
Sbjct: 490 NYLN-SLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPAN--LEILDISRNQLLAPNPDVF 546

Query: 607 AMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSL--SKCSSLQGL 664
                SL  L +++N      F     L+  I      N  +   P  +      S  G+
Sbjct: 547 V----SLSVLDITHNK-----FICECELSTFINWLNHTNVTIAGPPADIYCVYPDSFSGV 597

Query: 665 FLSNNSLS 672
            L + S  
Sbjct: 598 SLFSLSTE 605

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  168 bits (428), Expect = 4e-44
 Identities = 114/603 (18%), Positives = 207/603 (34%), Gaps = 100/603 (16%)

Query: 129 SNLKMLNLVGNLFNNSILSSLARLSSLTSLDLSANRLKGSIDIKGPKRLSRLNNLKVFDL 188
            + K L+L  N   +    S      L  LDLS   ++ +I+         L++L    L
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIE---DGAYQSLSHLSTLIL 83

Query: 189 SGNLFNNSILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEVP 248
           +GN   +  L + + LSSL+ L+  +  L  S++      L  L+EL++++N I +F++P
Sbjct: 84  TGNPIQSLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLP 142

Query: 249 QACSGLRKLSYLHLLRVGIRD-GSKLLQSMGSFPSLN-TLDLSYNNFTETVTTTTQGFPH 306
           +  S L  L +L L    I+      L+ +   P LN +LDLS N          +    
Sbjct: 143 EYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-- 200

Query: 307 FKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQE 366
              L +L + +   +LN     I G +   +  L L       N    D+    L  L  
Sbjct: 201 --RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSA--LEGLCN 256

Query: 367 LHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIP 426
           L + +  L                   +               LT++    L     +  
Sbjct: 257 LTIEEFRL-------------------AYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-- 295

Query: 427 ISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYN 486
             ++    +   +  +  N +                Q  +L L S              
Sbjct: 296 -RVKDFSYNFGWQHLELVNCKFG--------------QFPTLKLKS-------------- 326

Query: 487 QHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSK 546
              L+ +  +  K    F      +   L  L L              S   L       
Sbjct: 327 ---LKRLTFTSNKGGNAFS---EVDLPSLEFLDL--------------SRNGLSFKGCCS 366

Query: 547 NNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHL 606
            +  G          + L   ++S N +  ++ S+F  +  L+ LD  ++ L       +
Sbjct: 367 QSDFG---------TTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSV 416

Query: 607 AMGCVSLRSLALSNNNLEG---HMFSRNFNLTNLIWLQLEGNHFVGEIPQ-SLSKCSSLQ 662
            +   +L  L +S+ +       +F+    L++L  L++ GN F         ++  +L 
Sbjct: 417 FLSLRNLIYLDISHTHTRVAFNGIFN---GLSSLEVLKMAGNSFQENFLPDIFTELRNLT 473

Query: 663 GLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGS 722
            L LS   L    P    +L+ L+ + M  N ++      F +L  LQ + +  N    S
Sbjct: 474 FLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 533

Query: 723 LPS 725
            P 
Sbjct: 534 CPR 536

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  161 bits (410), Expect = 7e-42
 Identities = 109/599 (18%), Positives = 201/599 (33%), Gaps = 96/599 (16%)

Query: 181 NNLKVFDLSGNLFNNSILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYN 240
            + K  DLS N   +    S      L+ L L    ++ +I+   + SLS+L  L ++ N
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGN 86

Query: 241 EIDNFEVPQACSGLRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTETVTTT 300
            I +     A SGL  L  L  +   +         +G   +L  L++++N         
Sbjct: 87  PIQSLA-LGAFSGLSSLQKLVAVETNLASLEN--FPIGHLKTLKELNVAHNLIQS----- 138

Query: 301 TQGFPHFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCP 360
                                L   F      ++ ++++L LS++ + +   T  + L  
Sbjct: 139 -------------------FKLPEYF-----SNLTNLEHLDLSSNKIQSIYCTDLRVLHQ 174

Query: 361 L-VHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILS 419
           + +    L ++ N +    P     +  L  L + +N    ++  + +  L  +E   L 
Sbjct: 175 MPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLV 233

Query: 420 DNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGIT 479
              F+         N   L+ FD           +S      N  ++   L+        
Sbjct: 234 LGEFR---------NEGNLEKFD-----------KSALEGLCNLTIEEFRLAYLDYYLDD 273

Query: 480 FPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQL 539
                    ++    L  + +           N   + L LVN       + P    K L
Sbjct: 274 IIDLFNCLTNVSSFSLVSVTIERVKD---FSYNFGWQHLELVNCKF---GQFPTLKLKSL 327

Query: 540 RLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALD--GSIPSSFGNMNFLQFLDLSNNQ 597
           + L  + N             L  L   ++S N L   G    S      L++LDLS N 
Sbjct: 328 KRLTFTSNKGGNAFS---EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNG 384

Query: 598 LTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNF--NLTNLIWLQLEGNHFVGEIPQSL 655
           +   +  +  +G   L  L   ++NL+  M   +   +L NLI+L +   H         
Sbjct: 385 VI-TMSSNF-LGLEQLEHLDFQHSNLK-QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF 441

Query: 656 SKCSSLQGLFLSNNSLSGKIPRW-LGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDI 714
           +  SSL+ L ++ NS            L  L  + + +  +E   P  F  L  LQ+L++
Sbjct: 442 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 501

Query: 715 SDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPD 773
           + N +                          + +G F    +L  + L  N  + + P 
Sbjct: 502 ASNQLK------------------------SVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  157 bits (400), Expect = 1e-40
 Identities = 101/537 (18%), Positives = 195/537 (36%), Gaps = 54/537 (10%)

Query: 92  LNASLFTPFQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILSSLAR 151
           L +  F  F +L+ LDL   +I   +E+        LS+L  L L GN   +  L + + 
Sbjct: 43  LGSYSFFSFPELQVLDLSRCEIQT-IEDGA---YQSLSHLSTLILTGNPIQSLALGAFSG 98

Query: 152 LSSLTSLDLSANRLKGSIDIKGPKRLSRLNNLKVFDLSGNLFNNSILSSLARLSSLRSLL 211
           LSSL  L      L                      L      +        L +L+ L 
Sbjct: 99  LSSLQKLVAVETNLA--------------------SLENFPIGH--------LKTLKELN 130

Query: 212 LYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHL-LRVGIRDG 270
           +  N ++     + F +L+NLE LD+S N+I +         L ++  L+L L + +   
Sbjct: 131 VAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY-CTDLRVLHQMPLLNLSLDLSLNPM 189

Query: 271 SKLLQSMGSFPSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDARIALNTSFLQII 330
           + +         L+ L L  N  +  V  T         L+   +         +  +  
Sbjct: 190 NFIQPGAFKEIRLHKLTLRNNFDSLNVMKTC--IQGLAGLEVHRLVLGEFRNEGNLEKFD 247

Query: 331 GESMPSIQYLSLSN---SSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPW-CLANMT 386
             ++  +  L++     + +      +      L ++    +    +     +       
Sbjct: 248 KSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQ 307

Query: 387 SLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAENN 446
            L +++    Q        P + L S++ L  + N      S   L +   L+  D   N
Sbjct: 308 HLELVNCKFGQF-------PTLKLKSLKRLTFTSNKGGNAFSEVDLPS---LEFLDLSRN 357

Query: 447 EINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPN 506
            ++ +   S S       L+ L LS  +   IT          LE++   H  + +    
Sbjct: 358 GLSFKGCCSQSDFGTT-SLKYLDLS--FNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEF 414

Query: 507 WLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTV 566
            +  +   L  L + +      F    +    L +L ++ N+FQ +   +I   L  LT 
Sbjct: 415 SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTF 474

Query: 567 FNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNL 623
            ++S   L+   P++F +++ LQ L++++NQL   +P+ +     SL+ + L  N  
Sbjct: 475 LDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLK-SVPDGIFDRLTSLQKIWLHTNPW 530

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  145 bits (368), Expect = 2e-36
 Identities = 104/603 (17%), Positives = 180/603 (29%), Gaps = 122/603 (20%)

Query: 386 TSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAEN 445
            S + LD+S N  +  + S        ++ L LS    Q  I      + S L       
Sbjct: 28  FSTKNLDLSFNP-LRHLGSYSFFSFPELQVLDLSRCEIQT-IEDGAYQSLSHLSTLILTG 85

Query: 446 NEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFP 505
           N                  +QSL                                     
Sbjct: 86  N-----------------PIQSL------------------------------------A 92

Query: 506 NWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLT 565
                  + L++L  V  +L      PI   K L+ L+V+ N  Q     E    L+ L 
Sbjct: 93  LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLE 152

Query: 566 VFNISMNALDGSIPSSFGNMNFLQF----LDLSNNQLTGEIPEHLAMGCVSLRSLALSNN 621
             ++S N +     +    ++ +      LDLS N +    P       + L  L L NN
Sbjct: 153 HLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE--IRLHKLTLRNN 210

Query: 622 NLEGHMFSRNF-NLTNLIWLQLEGNHFVGEI------PQSLSKCSSLQGLFLSNNSLSG- 673
               ++       L  L   +L    F  E         +L    +L         L   
Sbjct: 211 FDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYY 270

Query: 674 --KIPRWLGNLTVLRHIIMPKNHIEGPIPLEF-CQLRILQILDISDNNISGSLPSCYDFV 730
              I      LT +    +    IE      +    + L++++                 
Sbjct: 271 LDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTL-----KLK 325

Query: 731 CIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLN--GNIPDRVDGLSQLSYLILAH 788
            ++++  + N         +  +  +L  LDLS N L+  G       G + L YL L+ 
Sbjct: 326 SLKRLTFTSNKGG---NAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSF 382

Query: 789 NNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIP-SCFDN----TTLHERYNNGSSLQPFET 843
           N +   +      L QL+ LD  ++NL      S F +      L   + +         
Sbjct: 383 NGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN--- 438

Query: 844 SFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQI-GN 902
                              F+  +              L  L ++ N    +  P I   
Sbjct: 439 -----------------GIFNGLSS-------------LEVLKMAGNSFQENFLPDIFTE 468

Query: 903 LTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYN 962
           L  +  L+LS   L    P+ F++L +++ L+++ N+L          L +L    +  N
Sbjct: 469 LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTN 528

Query: 963 NLS 965
              
Sbjct: 529 PWD 531

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  136 bits (345), Expect = 1e-33
 Identities = 82/467 (17%), Positives = 156/467 (33%), Gaps = 40/467 (8%)

Query: 539 LRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQL 598
            + LD+S N  + H+          L V ++S   +      ++ +++ L  L L+ N +
Sbjct: 30  TKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88

Query: 599 TGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHF-VGEIPQSLSK 657
              +      G  SL+ L     NL         +L  L  L +  N     ++P+  S 
Sbjct: 89  Q-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147

Query: 658 CSSLQGLFLSNNSLSGKIPRWLGNLTVLR----HIIMPKNHIEGPIPLEFCQLRILQILD 713
            ++L+ L LS+N +       L  L  +      + +  N +    P  F ++R L  L 
Sbjct: 148 LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LHKLT 206

Query: 714 ISDNNISGSLPS--CYDFVCIEQVHLSKNMLHGQ-----LKEGTFFNCLTLMILDLSYNH 766
           + +N  S ++          +E   L       +       +        L I +    +
Sbjct: 207 LRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAY 266

Query: 767 LNG---NIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCF 823
           L+    +I D  + L+ +S   L    +E             Q L+L N           
Sbjct: 267 LDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD--FSYNFGWQHLELVNCKFGQFPTLKL 324

Query: 824 DN-TTLHERYNNGSSLQPFET----SFVIMGGMDVDPKKQILESFDFTTK----SITYTY 874
            +   L    N G +           F+ +    +  K    +S   TT      +++  
Sbjct: 325 KSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNG 384

Query: 875 QGRVPSLLSG------LDLSCNRLIGHIPPQI--GNLTKIQTLNLSHNNLAGPIPSTFSN 926
              + S   G      LD   + L   +       +L  +  L++SH +        F+ 
Sbjct: 385 VITMSSNFLGLEQLEHLDFQHSNLK-QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG 443

Query: 927 LRNIESLDLSYNKLSWKI-PYQLVELNTLAVFSVAYNNLSGKIPERA 972
           L ++E L ++ N       P    EL  L    ++   L  ++   A
Sbjct: 444 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTA 489

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  124 bits (313), Expect = 1e-29
 Identities = 75/411 (18%), Positives = 136/411 (33%), Gaps = 51/411 (12%)

Query: 592 DLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEI 651
                    +IP++L     S ++L LS N L        F+   L  L L         
Sbjct: 13  QCMELNFY-KIPDNLP---FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIE 68

Query: 652 PQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQI 711
             +    S L  L L+ N +          L+ L+ ++  + ++          L+ L+ 
Sbjct: 69  DGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKE 128

Query: 712 LDISDNNISGSLPSCYDFVC---IEQVHLSKNMLHGQLKEGTFFN----CLTLMILDLSY 764
           L+++ N I  S      F     +E + LS N +   +            L  + LDLS 
Sbjct: 129 LNVAHNLIQ-SFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSL 186

Query: 765 NHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCR-LNQLQLLDL------SNNNLHG 817
           N +N  I        +L  L L +N     V     + L  L++  L      +  NL  
Sbjct: 187 NPMNF-IQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEK 245

Query: 818 HIPSCFDN-TTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQG 876
              S  +    L       + L  +         +D+      + SF   + +I      
Sbjct: 246 FDKSALEGLCNLTIEEFRLAYLDYYLDDI-----IDLFNCLTNVSSFSLVSVTIERVKDF 300

Query: 877 RVPSLLSGLDLSCNRL--------------------IGHIPPQIGNLTKIQTLNLSHNNL 916
                   L+L   +                      G+   ++ +L  ++ L+LS N L
Sbjct: 301 SYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEV-DLPSLEFLDLSRNGL 359

Query: 917 A--GPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLS 965
           +  G    +     +++ LDLS+N +   +    + L  L      ++NL 
Sbjct: 360 SFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLK 409

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  114 bits (286), Expect = 3e-26
 Identities = 83/455 (18%), Positives = 156/455 (34%), Gaps = 45/455 (9%)

Query: 78  VLDLSQTHRGEYWYLNASLFTPFQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLV 137
            L   +T+      L        + L+ L++  N I      E     S L+NL+ L+L 
Sbjct: 104 KLVAVETN---LASLENFPIGHLKTLKELNVAHNLIQSFKLPEY---FSNLTNLEHLDLS 157

Query: 138 GNLFNNSILSSLARLSSLT----SLDLSANRLKGSIDIKGPKRLSRLNNLKVFDLSGNLF 193
            N   +   + L  L  +     SLDLS N +             +   L    L  N  
Sbjct: 158 SNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFI-----QPGAFKEIRLHKLTLRNNFD 212

Query: 194 NNSILS-SLARLSSLRSLLLYDNRLEG-----SIDVKEFDSLSNL--EELDMSYNEIDNF 245
           + +++   +  L+ L    L              D    + L NL  EE  ++Y +    
Sbjct: 213 SLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLD 272

Query: 246 EVPQACSGLRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTETVTTTTQGFP 305
           ++    + L  +S   L+ V I      ++          L+L    F +          
Sbjct: 273 DIIDLFNCLTNVSSFSLVSVTIER----VKDFSYNFGWQHLELVNCKFGQ------FPTL 322

Query: 306 HFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQ 365
             KSLK L     +     S +      +PS+++L LS + +S               L+
Sbjct: 323 KLKSLKRLTFTSNKGGNAFSEV-----DLPSLEFLDLSRNGLSFKGCCSQS-DFGTTSLK 376

Query: 366 ELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQI 425
            L ++ N +  ++      +  L  LD   + L      S  + L ++  L +S  H ++
Sbjct: 377 YLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV 435

Query: 426 PISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLY 485
                     S L++     N    E       T     L  L LS    + ++ P    
Sbjct: 436 -AFNGIFNGLSSLEVLKMAGNSF-QENFLPDIFTELR-NLTFLDLSQCQLEQLS-PTAFN 491

Query: 486 NQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSL 520
           +   L+ + ++  ++    P+ + +  T L+++ L
Sbjct: 492 SLSSLQVLNMASNQLK-SVPDGIFDRLTSLQKIWL 525

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 52.0 bits (125), Expect = 9e-07
 Identities = 29/118 (24%), Positives = 48/118 (40%), Gaps = 10/118 (8%)

Query: 77  VVLDLSQTHRGEYWYLNASLFTPFQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNL 136
           + LD+S TH          +F     LE L +  N        +     + L NL  L+L
Sbjct: 424 IYLDISHTHTRV---AFNGIFNGLSSLEVLKMAGNSFQENFLPDI---FTELRNLTFLDL 477

Query: 137 VGNLFNNSILSSLARLSSLTSLDLSANRLKGSIDIKGPKRLSRLNNLKVFDLSGNLFN 194
                     ++   LSSL  L++++N+LK S+         RL +L+   L  N ++
Sbjct: 478 SQCQLEQLSPTAFNSLSSLQVLNMASNQLK-SVP---DGIFDRLTSLQKIWLHTNPWD 531

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  155 bits (395), Expect = 1e-40
 Identities = 102/505 (20%), Positives = 201/505 (39%), Gaps = 67/505 (13%)

Query: 100 FQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILSSLARLSSLTSLD 159
             +     L   ++            + L  +  L        +  +  +  L++LT ++
Sbjct: 23  LAEKMKTVLGKTNV------TDTVSQTDLDQVTTLQADRLGIKS--IDGVEYLNNLTQIN 74

Query: 160 LSANRLKGSIDIKGPKRLSRLNNLKVFDLSGNLFNNSILSSLARLSSLRSLLLYDNRLEG 219
            S N+L           L  L  L    ++ N   +  ++ LA L++L  L L++N++  
Sbjct: 75  FSNNQLTDITP------LKNLTKLVDILMNNNQIAD--ITPLANLTNLTGLTLFNNQIT- 125

Query: 220 SIDVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGIRDGSKLLQSMGS 279
             D+    +L+NL  L++S N I +     A SGL  L  L        +    L+ + +
Sbjct: 126 --DIDPLKNLTNLNRLELSSNTISDIS---ALSGLTSLQQLSF-----GNQVTDLKPLAN 175

Query: 280 FPSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDARIALNTSFLQIIGESMPSIQY 339
             +L  LD+S N  ++             +L+ L   + +I+  T         + ++  
Sbjct: 176 LTTLERLDISSNKVSD-----ISVLAKLTNLESLIATNNQISDITPL-----GILTNLDE 225

Query: 340 LSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLI 399
           LSL+ + + +        L  L +L +L +A+N +    P  L+ +T L  L + +NQ+ 
Sbjct: 226 LSLNGNQLKDIG-----TLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQI- 277

Query: 400 GSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLT 459
              + SPL  LT++ +L L++N  +    + P+ N   L       N I+ +I    SLT
Sbjct: 278 --SNISPLAGLTALTNLELNENQLE---DISPISNLKNLTYLTLYFNNIS-DISPVSSLT 331

Query: 460 TPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLS 519
               +LQ L   +   + ++    L N  ++ ++   H ++++  P   L N T++ QL 
Sbjct: 332 ----KLQRLFFYN---NKVSDVSSLANLTNINWLSAGHNQISDLTP---LANLTRITQLG 381

Query: 520 LVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHI-PLEIGDILSRLTVFNISMNALDGSI 578
           L + +       P++    + + +  KN     I P  I D     T  +I+ N L    
Sbjct: 382 LNDQAWTN---APVNYKANVSIPNTVKNVTGALIAPATISD-GGSYTEPDITWN-LPSYT 436

Query: 579 PSSFGNMNFLQFLDLSNNQLTGEIP 603
                  +    +       +G + 
Sbjct: 437 NEVSYTFSQPVTIGKGTTTFSGTVT 461

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  149 bits (378), Expect = 2e-38
 Identities = 100/551 (18%), Positives = 199/551 (36%), Gaps = 92/551 (16%)

Query: 105 SLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILSSLARLSSLTSLDLSANR 164
           +   +D  I        +   + L+      L      +    S   L  +T+L      
Sbjct: 6   ATITQDTPI------NQIFTDTALAEKMKTVLGKTNVTD--TVSQTDLDQVTTLQADRLG 57

Query: 165 LKGSIDIKGPKRLSRLNNLKVFDLSGNLFNNSILSSLARLSSLRSLLLYDNRLEGSIDVK 224
                 IK    +  LNNL   + S N   +  ++ L  L+ L  +L+ +N++    D+ 
Sbjct: 58  ------IKSIDGVEYLNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIA---DIT 106

Query: 225 EFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGIRDGSKLLQSMGSFPSLN 284
              +L+NL  L +  N+I + +       L  L+ L L    I D    + ++    SL 
Sbjct: 107 PLANLTNLTGLTLFNNQITDID---PLKNLTNLNRLELSSNTISD----ISALSGLTSLQ 159

Query: 285 TLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSN 344
            L            T  +   +  +L+ L +   ++    S + ++   + +++ L  +N
Sbjct: 160 QLSFGNQV------TDLKPLANLTTLERLDISSNKV----SDISVLA-KLTNLESLIATN 208

Query: 345 SSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISS 404
           + +S+ +      L  L +L EL +  N L+      LA++T+L  LD+++NQ+      
Sbjct: 209 NQISDIT-----PLGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLA-- 259

Query: 405 SPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQ 464
            PL  LT + +L L  N      ++ PL   + L   +   N++  +I    +L      
Sbjct: 260 -PLSGLTKLTELKLGANQIS---NISPLAGLTALTNLELNENQLE-DISPISNLK----N 310

Query: 465 LQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDS 524
           L  L                     L +  +S I          + + TKL++L   N+ 
Sbjct: 311 LTYL--------------------TLYFNNISDISP--------VSSLTKLQRLFFYNNK 342

Query: 525 LVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGN 584
           +       + +   +  L    N      PL     L+R+T   ++  A   +  +   N
Sbjct: 343 VSDV--SSLANLTNINWLSAGHNQISDLTPLA---NLTRITQLGLNDQAWTNAPVNYKAN 397

Query: 585 MNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEG 644
           ++    +      L    P  ++ G  S     ++ N         ++  +  + +    
Sbjct: 398 VSIPNTVKNVTGALI--APATISDG-GSYTEPDITWNLPSYTN-EVSYTFSQPVTIGKGT 453

Query: 645 NHFVGEIPQSL 655
             F G + Q L
Sbjct: 454 TTFSGTVTQPL 464

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  145 bits (368), Expect = 3e-37
 Identities = 102/536 (19%), Positives = 192/536 (35%), Gaps = 83/536 (15%)

Query: 209 SLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGIR 268
           + +  D  +     +    +L+   +  +    + +     + + L +++ L   R+GI+
Sbjct: 6   ATITQDTPIN---QIFTDTALAEKMKTVLGKTNVTD---TVSQTDLDQVTTLQADRLGIK 59

Query: 269 DGSKLLQSMGSFPSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDARIALNTSFLQ 328
                +  +    +L  ++ S N  T+          +   L ++ M++ +IA  T    
Sbjct: 60  S----IDGVEYLNNLTQINFSNNQLTDI-----TPLKNLTKLVDILMNNNQIADITPL-- 108

Query: 329 IIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSL 388
               ++ ++  L+L N+ +++        L  L +L  L ++ N +       L+ +TSL
Sbjct: 109 ---ANLTNLTGLTLFNNQITDID-----PLKNLTNLNRLELSSNTISDISA--LSGLTSL 158

Query: 389 RILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEI 448
           + L   +          PL +LT++E L +S N       +  L   + L+   A NN+I
Sbjct: 159 QQLSFGNQV----TDLKPLANLTTLERLDISSNKVS---DISVLAKLTNLESLIATNNQI 211

Query: 449 NAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWL 508
           + +I     LT     L  L L+              NQ       L  I          
Sbjct: 212 S-DITPLGILT----NLDELSLNG-------------NQ-------LKDIG--------T 238

Query: 509 LENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFN 568
           L + T L  L L N+ +      P+    +L  L +  N      PL     L+ LT   
Sbjct: 239 LASLTNLTDLDLANNQISNL--APLSGLTKLTELKLGANQISNISPLAG---LTALTNLE 293

Query: 569 ISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMF 628
           ++ N L+   P    N+  L +L L  N ++   P         L+ L   NN +     
Sbjct: 294 LNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVS---SLTKLQRLFFYNNKVSD--V 346

Query: 629 SRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHI 688
           S   NLTN+ WL    N      P  L+  + +  L L++ + +     +  N+++   +
Sbjct: 347 SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTV 404

Query: 689 IMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHG 744
                 +  P              DI+ N  S +    Y F     +        G
Sbjct: 405 KNVTGALIAPA--TISDGGSYTEPDITWNLPSYTNEVSYTFSQPVTIGKGTTTFSG 458

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  143 bits (364), Expect = 1e-36
 Identities = 101/497 (20%), Positives = 177/497 (35%), Gaps = 72/497 (14%)

Query: 320 IALNTSFLQIIG-ESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSL 378
           I  +T   QI    ++       L  ++V++           L  +  L      ++ S+
Sbjct: 8   ITQDTPINQIFTDTALAEKMKTVLGKTNVTDTV-----SQTDLDQVTTLQADRLGIK-SI 61

Query: 379 PWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRL 438
              +  + +L  ++ S+NQL      +PL +LT + D+++++N       + PL N + L
Sbjct: 62  D-GVEYLNNLTQINFSNNQLT---DITPLKNLTKLVDILMNNNQIA---DITPLANLTNL 114

Query: 439 KIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHI 498
                 NN+I  +I    +LT     L  L LSS   + I+    L     L+ +   + 
Sbjct: 115 TGLTLFNNQIT-DIDPLKNLT----NLNRLELSS---NTISDISALSGLTSLQQLSFGN- 165

Query: 499 KMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIG 558
           ++ +  P   L N T L +L + ++ +       +     L  L  + N      PL I 
Sbjct: 166 QVTDLKP---LANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITPLGI- 219

Query: 559 DILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLAL 618
             L+ L   +++ N L      +  ++  L  LDL+NNQ++   P     G   L  L L
Sbjct: 220 --LTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAPLS---GLTKLTELKL 272

Query: 619 SNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRW 678
             N +     S    LT L  L+L  N      P  +S   +L  L L  N++S   P  
Sbjct: 273 GANQISN--ISPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP-- 326

Query: 679 LGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLS 738
           + +LT L+ +    N +     L    L  +  L    N IS   P              
Sbjct: 327 VSSLTKLQRLFFYNNKVSDVSSLA--NLTNINWLSAGHNQISDLTP-------------- 370

Query: 739 KNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQ 798
                         N   +  L L+         +    +S  + +      L    P  
Sbjct: 371 ------------LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGAL--IAPAT 416

Query: 799 LCRLNQLQLLDLSNNNL 815
           +         D++ N  
Sbjct: 417 ISDGGSYTEPDITWNLP 433

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  141 bits (357), Expect = 8e-36
 Identities = 90/457 (19%), Positives = 166/457 (36%), Gaps = 66/457 (14%)

Query: 382 LANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIF 441
              +       +    +  ++       L  +  L       +   S++ +   + L   
Sbjct: 20  DTALAEKMKTVLGKTNVTDTV---SQTDLDQVTTLQADRLGIK---SIDGVEYLNNLTQI 73

Query: 442 DAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMN 501
           +  NN++  +I    +LT    +L  +L+++     I     L N  +L  + L + ++ 
Sbjct: 74  NFSNNQLT-DITPLKNLT----KLVDILMNNNQ---IADITPLANLTNLTGLTLFNNQIT 125

Query: 502 EEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDIL 561
           +  P   L+N T L +L L ++++       +     L+ L    N      PL     L
Sbjct: 126 DIDP---LKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSFG-NQVTDLKPLAN---L 176

Query: 562 SRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNN 621
           + L   +IS N +  S  S    +  L+ L  +NNQ++   P        +L  L+L+ N
Sbjct: 177 TTLERLDISSNKV--SDISVLAKLTNLESLIATNNQISDITPLG---ILTNLDELSLNGN 231

Query: 622 NLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGN 681
            L+        +LTNL  L L  N      P  LS  + L  L L  N +S   P  L  
Sbjct: 232 QLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAG 285

Query: 682 LTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNM 741
           LT L ++ + +N +E   P+    L+ L  L +  NNIS   P                 
Sbjct: 286 LTALTNLELNENQLEDISPIS--NLKNLTYLTLYFNNISDISP----------------- 326

Query: 742 LHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCR 801
                      +   L  L    N ++      +  L+ +++L   HN +    P+    
Sbjct: 327 ---------VSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISDLTPLA--N 373

Query: 802 LNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSL 838
           L ++  L L++        +   N ++     N +  
Sbjct: 374 LTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGA 410

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  137 bits (348), Expect = 1e-34
 Identities = 101/448 (22%), Positives = 165/448 (36%), Gaps = 68/448 (15%)

Query: 509 LENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFN 568
                +  +  L   ++     +      Q+  L   +   +    +E    L+ LT  N
Sbjct: 20  DTALAEKMKTVLGKTNVTDT--VSQTDLDQVTTLQADRLGIKSIDGVEY---LNNLTQIN 74

Query: 569 ISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMF 628
            S N L    P    N+  L  + ++NNQ+    P  LA    +L  L L NN +     
Sbjct: 75  FSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LA-NLTNLTGLTLFNNQITD--I 127

Query: 629 SRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHI 688
               NLTNL  L+L  N        +LS  +SLQ L   N  ++   P  L NLT L  +
Sbjct: 128 DPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFGNQ-VTDLKP--LANLTTLERL 182

Query: 689 IMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKE 748
            +  N +     L   +L  L+ L  ++N IS  +        ++++ L+ N L      
Sbjct: 183 DISSNKVSDISVLA--KLTNLESLIATNNQIS-DITPLGILTNLDELSLNGNQLK---DI 236

Query: 749 GTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLL 808
           GT  +   L  LDL+ N ++   P  + GL++L+ L L  N +    P+    L  L  L
Sbjct: 237 GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLA--GLTALTNL 292

Query: 809 DLSNNNLHG--HIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFT 866
           +L+ N L     I +  + T L   +NN S + P  +                       
Sbjct: 293 ELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSL---------------------- 330

Query: 867 TKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSN 926
                        + L  L    N++       + NLT I  L+  HN ++   P   +N
Sbjct: 331 -------------TKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LAN 373

Query: 927 LRNIESLDLSYNKLSWKIPYQLVELNTL 954
           L  I  L L+    +         ++  
Sbjct: 374 LTRITQLGLNDQAWTNAPVNYKANVSIP 401

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  137 bits (348), Expect = 2e-34
 Identities = 76/364 (20%), Positives = 143/364 (39%), Gaps = 50/364 (13%)

Query: 97  FTPFQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILSSLARLSSLT 156
                +L  + + +N I        +  L+ L+NL  L L  N   +  +  L  L++L 
Sbjct: 86  LKNLTKLVDILMNNNQI------ADITPLANLTNLTGLTLFNNQITD--IDPLKNLTNLN 137

Query: 157 SLDLSANRLKGSIDIKGPKRLSRLNNLKVFDLSGNLFNNSILSSLARLSSLRSLLLYDNR 216
            L+LS+N       I     LS L +L+       +   + L  LA L++L  L +  N+
Sbjct: 138 RLELSSNT------ISDISALSGLTSLQQLSFGNQV---TDLKPLANLTTLERLDISSNK 188

Query: 217 LEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGIRDGSKLLQS 276
           +    D+     L+NLE L  + N+I +         L  L  L L    ++D    + +
Sbjct: 189 VS---DISVLAKLTNLESLIATNNQISDIT---PLGILTNLDELSLNGNQLKD----IGT 238

Query: 277 MGSFPSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDARIALNTSFLQIIGESMPS 336
           + S  +L  LDL+ N       +          L EL +   +I+  +         + +
Sbjct: 239 LASLTNLTDLDLANNQI-----SNLAPLSGLTKLTELKLGANQISNISPL-----AGLTA 288

Query: 337 IQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSN 396
           +  L L+ + + + S      +  L +L  L +  N++    P  ++++T L+ L   +N
Sbjct: 289 LTNLELNENQLEDIS-----PISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNN 341

Query: 397 QLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESH 456
           ++      S L +LT+I  L    N       L PL N +R+      +       +   
Sbjct: 342 KV---SDVSSLANLTNINWLSAGHNQIS---DLTPLANLTRITQLGLNDQAWTNAPVNYK 395

Query: 457 SLTT 460
           +  +
Sbjct: 396 ANVS 399

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  121 bits (306), Expect = 3e-29
 Identities = 79/353 (22%), Positives = 145/353 (41%), Gaps = 48/353 (13%)

Query: 97  FTPFQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILSSLARLSSLT 156
                 L  L+L  N I        +  LS L++L+ L+    +   + L  LA L++L 
Sbjct: 130 LKNLTNLNRLELSSNTI------SDISALSGLTSLQQLSFGNQV---TDLKPLANLTTLE 180

Query: 157 SLDLSANRLKGSIDIKGPKRLSRLNNLKVFDLSGNLFNNSILSSLARLSSLRSLLLYDNR 216
            LD+S+N+      +     L++L NL+    + N  ++  ++ L  L++L  L L  N+
Sbjct: 181 RLDISSNK------VSDISVLAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQ 232

Query: 217 LEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGIRDGSKLLQS 276
           L+   D+    SL+NL +LD++ N+I N       SGL KL+ L L    I +    +  
Sbjct: 233 LK---DIGTLASLTNLTDLDLANNQISNLA---PLSGLTKLTELKLGANQISN----ISP 282

Query: 277 MGSFPSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDARIALNTSFLQIIGESMPS 336
           +    +L  L+L+ N              + K+L  L +    I+  +        S+  
Sbjct: 283 LAGLTALTNLELNENQL-----EDISPISNLKNLTYLTLYFNNISDISPV-----SSLTK 332

Query: 337 IQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSN 396
           +Q L   N+ VS+ S      L  L ++  L    N +    P  LAN+T +  L ++  
Sbjct: 333 LQRLFFYNNKVSDVS-----SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 385

Query: 397 QLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEIN 449
                 +++P+ +  ++       N     I+   + +       D   N  +
Sbjct: 386 A----WTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDITWNLPS 434

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 50.7 bits (122), Expect = 2e-06
 Identities = 16/88 (18%), Positives = 34/88 (38%), Gaps = 6/88 (6%)

Query: 882 LSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLS 941
           ++ L      +       +  L  +  +N S+N L    P    NL  +  + ++ N+++
Sbjct: 48  VTTLQADRLGI--KSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIA 103

Query: 942 WKIPYQLVELNTLAVFSVAYNNLSGKIP 969
              P  L  L  L   ++  N ++   P
Sbjct: 104 DITP--LANLTNLTGLTLFNNQITDIDP 129

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  152 bits (387), Expect = 4e-39
 Identities = 89/560 (15%), Positives = 178/560 (31%), Gaps = 81/560 (14%)

Query: 386 TSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAEN 445
            +++ LD+S N+ I  I    L    +++ LIL  +     I  +  ++   L+  D  +
Sbjct: 26  AAMKSLDLSFNK-ITYIGHGDLRACANLQVLILKSSRINT-IEGDAFYSLGSLEHLDLSD 83

Query: 446 NEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFP 505
           N +++  + S     P   L+ L L       +       N  +L+ +R+ +++   E  
Sbjct: 84  NHLSS--LSSSWFG-PLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIR 140

Query: 506 NWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLT 565
                  T L +L +   SL       + S + +  L +  +     +     DILS + 
Sbjct: 141 RIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVR 199

Query: 566 VFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEG 625
              +    L     S          +     + +  + +      + L    L  + +E 
Sbjct: 200 YLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGS-VLTDESFNELLKLLRYILELSEVE- 257

Query: 626 HMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVL 685
                +  L  L       +  V E+ +   +  +++ L +    L   +      L  +
Sbjct: 258 ---FDDCTLNGLGDFNPSESDVVSELGKV--ETVTIRRLHIPQFYLFYDLSTVYSLLEKV 312

Query: 686 RHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQ 745
           + I +  + +          L+ L+ LD+S+N +                          
Sbjct: 313 KRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMV----------------------EEY 350

Query: 746 LKEGTFFNCLT-LMILDLSYNHLN--GNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRL 802
           LK          L  L LS NHL       + +  L  L+ L ++ N     +P      
Sbjct: 351 LKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWP 409

Query: 803 NQLQLLDLSNNNLHGHIPSC-FDN-TTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQIL 860
            +++ L+LS+  +   + +C       L    NN  S   F                   
Sbjct: 410 EKMRFLNLSSTGIR-VVKTCIPQTLEVLDVSNNNLDSFSLFLPR---------------- 452

Query: 861 ESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPI 920
                                L  L +S N+L   +P        +  + +S N L    
Sbjct: 453 ---------------------LQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVP 489

Query: 921 PSTFSNLRNIESLDLSYNKL 940
              F  L +++ + L  N  
Sbjct: 490 DGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  151 bits (384), Expect = 9e-39
 Identities = 90/521 (17%), Positives = 197/521 (37%), Gaps = 45/521 (8%)

Query: 280 FPSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDARIAL--NTSFLQIIGESMPSI 337
             ++ +LDLS+N  T              +L+ L +  +RI      +F      S+ S+
Sbjct: 25  TAAMKSLDLSFNKITYI---GHGDLRACANLQVLILKSSRINTIEGDAF-----YSLGSL 76

Query: 338 QYLSLSNSSVSNNSRTLDQG-LCPLVHLQELHMADNDLRG-SLPWCLANMTSLRILDVSS 395
           ++L LS+    N+  +L      PL  L+ L++  N  +   +     N+T+L+ L + +
Sbjct: 77  EHLDLSD----NHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGN 132

Query: 396 NQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIES 455
            +    I       LTS+ +L +     +     + L +   +       +E    ++E 
Sbjct: 133 VETFSEIRRIDFAGLTSLNELEIKALSLRN-YQSQSLKSIRDIHHLTLHLSESA-FLLEI 190

Query: 456 HSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKL 515
            +    + +   L  ++  R   +          ++ +      + +E  N LL+    +
Sbjct: 191 FADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYI 250

Query: 516 RQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALD 575
            +LS               +   L   + S+++    +          +   +I    L 
Sbjct: 251 LELS--------EVEFDDCTLNGLGDFNPSESDVVSELG---KVETVTIRRLHIPQFYLF 299

Query: 576 GSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLE---GHMFSRNF 632
             + + +  +  ++ + + N+++   +P   +    SL  L LS N +        +   
Sbjct: 300 YDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKG 358

Query: 633 NLTNLIWLQLEGNHF--VGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIM 690
              +L  L L  NH   + +  + L    +L  L +S N+    +P        +R + +
Sbjct: 359 AWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNL 417

Query: 691 PKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGT 750
               I     ++ C  + L++LD+S+NN+  S         ++++++S+N L   L + +
Sbjct: 418 SSTGIRV---VKTCIPQTLEVLDVSNNNLD-SFSL--FLPRLQELYISRNKLK-TLPDAS 470

Query: 751 FFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNL 791
            F  L   ++ +S N L        D L+ L  + L  N  
Sbjct: 471 LFPVLL--VMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  150 bits (380), Expect = 3e-38
 Identities = 99/572 (17%), Positives = 189/572 (33%), Gaps = 72/572 (12%)

Query: 153 SSLTSLDLSANRLKGSIDIKGPKRLSRLNNLKVFDLSGNLFNNSILSSLARLSSLRSLLL 212
            +    D  +     SI    P  L+    +K  DLS N         L   ++L+ L+L
Sbjct: 5   DASGVCDGRSRSFT-SI----PSGLTA--AMKSLDLSFNKITYIGHGDLRACANLQVLIL 57

Query: 213 YDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGIRDGSK 272
             +R+  +I+   F SL +LE LD+S N + +         L  L YL+L+    +    
Sbjct: 58  KSSRIN-TIEGDAFYSLGSLEHLDLSDNHLSSLS-SSWFGPLSSLKYLNLMGNPYQT--- 112

Query: 273 LLQSMGSF---PSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDARIALNTSFLQI 329
            L     F    +L TL +        +      F    SL EL +    +    ++   
Sbjct: 113 -LGVTSLFPNLTNLQTLRIGNVETFSEIRRID--FAGLTSLNELEIKALSL---RNYQSQ 166

Query: 330 IGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLR 389
             +S+  I +L+L  S  +            L  ++ L + D +L       L       
Sbjct: 167 SLKSIRDIHHLTLHLSESAFLLEIFADI---LSSVRYLELRDTNLARFQFSPLPVDEVSS 223

Query: 390 ILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEIN 449
            +   + +    ++      L  +   IL  +  +           + L  F+   +++ 
Sbjct: 224 PMKKLAFR-GSVLTDESFNELLKLLRYILELSEVEFDD-----CTLNGLGDFNPSESDVV 277

Query: 450 AEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLL 509
           +E+ +  ++T     ++ L +   Y               ++ + + + K+    P    
Sbjct: 278 SELGKVETVT-----IRRLHIPQFYLFYD-LSTVYSLLEKVKRITVENSKVF-LVPCSFS 330

Query: 510 ENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNI 569
           ++   L  L L              S   +    +  +  +G            L    +
Sbjct: 331 QHLKSLEFLDL--------------SENLMVEEYLKNSACKGA--------WPSLQTLVL 368

Query: 570 SMNALD--GSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHM 627
           S N L            +  L  LD+S N     +P+        +R L LS+  +    
Sbjct: 369 SQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQ-WPEKMRFLNLSSTGIR--- 423

Query: 628 FSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRH 687
             +      L  L +  N+        L     LQ L++S N L   +P       VL  
Sbjct: 424 VVKTCIPQTLEVLDVSNNNL-DSFSLFL---PRLQELYISRNKLK-TLPDA-SLFPVLLV 477

Query: 688 IIMPKNHIEGPIPLEFCQLRILQILDISDNNI 719
           + + +N ++      F +L  LQ + +  N  
Sbjct: 478 MKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  148 bits (376), Expect = 1e-37
 Identities = 106/536 (19%), Positives = 193/536 (36%), Gaps = 63/536 (11%)

Query: 100 FQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILSSLARLSSLTSLD 159
              ++SLDL  N I      +    L   +NL++L L  +  N     +   L SL  LD
Sbjct: 25  TAAMKSLDLSFNKITYIGHGD----LRACANLQVLILKSSRINTIEGDAFYSLGSLEHLD 80

Query: 160 LSANRLKGSIDIKGPKRLSRLNNLKVFDLSGNLFNN-SILSSLARLSSLRSLLLYDNRLE 218
           LS N L  S+          L++LK  +L GN +    + S    L++L++L + +    
Sbjct: 81  LSDNHLS-SLS---SSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETF 136

Query: 219 GSIDVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGIRDGSKLLQSMG 278
             I   +F  L++L EL++    + N++  Q+   +R + +L L         ++     
Sbjct: 137 SEIRRIDFAGLTSLNELEIKALSLRNYQ-SQSLKSIRDIHHLTLHLSESAFLLEIFAD-- 193

Query: 279 SFPSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDARI---------ALNTSFLQI 329
              S+  L+L   N      +          +K+L    + +          L    L++
Sbjct: 194 ILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILEL 253

Query: 330 IGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLR 389
                       L + + S +    + G    V ++ LH+    L   L    + +  ++
Sbjct: 254 SEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVK 313

Query: 390 ILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNH--SRLKIFDAENNE 447
            + V +++ +  +  S   HL S+E L LS+N                  L+      N 
Sbjct: 314 RITVENSK-VFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNH 372

Query: 448 INAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNW 507
           +   + ++  +      L SL +S              N                +   W
Sbjct: 373 LR-SMQKTGEILLTLKNLTSLDIS-------------RNT----------FHPMPDSCQW 408

Query: 508 LLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVF 567
                 K+R L+L +  +     +     + L +LDVS NN            L RL   
Sbjct: 409 P----EKMRFLNLSSTGIR---VVKTCIPQTLEVLDVSNNNLD-----SFSLFLPRLQEL 456

Query: 568 NISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNL 623
            IS N L  ++P +      L  + +S NQL   +P+ +     SL+ + L  N  
Sbjct: 457 YISRNKLK-TLPDA-SLFPVLLVMKISRNQLK-SVPDGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  143 bits (363), Expect = 4e-36
 Identities = 99/556 (17%), Positives = 196/556 (35%), Gaps = 83/556 (14%)

Query: 128 LSNLKMLNLVGNLFNNSILSSLARLSSLTSLDLSANRLKGSIDIKGPKRLSRLNNLKVFD 187
            + +K L+L  N         L   ++L  L L ++R+  +I+         L +L+  D
Sbjct: 25  TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRIN-TIE---GDAFYSLGSLEHLD 80

Query: 188 LSGNLFNNSILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEV 247
           LS N  ++   S    LSSL+ L L  N  +       F +L+NL+ L +   E  +   
Sbjct: 81  LSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIR 140

Query: 248 PQACSGLRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTETVTTTTQGFPHF 307
               +GL  L+ L +  + +R+     QS+ S   ++ L L  +     +          
Sbjct: 141 RIDFAGLTSLNELEIKALSLRNYQS--QSLKSIRDIHHLTLHLSESAFLLEIF---ADIL 195

Query: 308 KSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNS-RTLDQGLCPLVHLQE 366
            S++ L + D  +A        + E    ++ L+   S +++ S   L + L  ++ L E
Sbjct: 196 SSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSE 255

Query: 367 LHMADNDLRGSLPWCLA-----------NMTSLRILDVSSNQLIGSISSSPLIHLTSIED 415
           +   D  L G   +  +              ++R L +     +    S+    L  ++ 
Sbjct: 256 VEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFY-LFYDLSTVYSLLEKVKR 314

Query: 416 LILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYR 475
           + + ++   + +      +   L+  D   N +  E +++ +                  
Sbjct: 315 ITVENSKVFL-VPCSFSQHLKSLEFLDLSENLMVEEYLKNSA------------------ 355

Query: 476 DGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHS 535
                         L+ + LS         N L      +++   +  +L          
Sbjct: 356 -------CKGAWPSLQTLVLSQ--------NHL----RSMQKTGEILLTL---------- 386

Query: 536 HKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSN 595
            K L  LD+S+N F   +P        ++   N+S   +   + +       L+ LD+SN
Sbjct: 387 -KNLTSLDISRNTFH-PMPDSC-QWPEKMRFLNLSSTGIR-VVKT--CIPQTLEVLDVSN 440

Query: 596 NQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSL 655
           N L       L      L+ L +S N L             L+ +++  N          
Sbjct: 441 NNLD-SFSLFL----PRLQELYISRNKL--KTLPDASLFPVLLVMKISRNQLKSVPDGIF 493

Query: 656 SKCSSLQGLFLSNNSL 671
            + +SLQ ++L  N  
Sbjct: 494 DRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  141 bits (358), Expect = 2e-35
 Identities = 91/488 (18%), Positives = 175/488 (35%), Gaps = 40/488 (8%)

Query: 363 HLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNH 422
            ++ L ++ N +       L    +L++L + S++ I +I       L S+E L LSDNH
Sbjct: 27  AMKSLDLSFNKITYIGHGDLRACANLQVLILKSSR-INTIEGDAFYSLGSLEHLDLSDNH 85

Query: 423 FQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPK 482
               +S       S LK  +   N      +   SL      LQ+L + +          
Sbjct: 86  LSS-LSSSWFGPLSSLKYLNLMGNPYQT--LGVTSLFPNLTNLQTLRIGNVETFSEIRRI 142

Query: 483 FLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLL 542
                  L  + +  + +   + +  L++   +  L+L          +       +R L
Sbjct: 143 DFAGLTSLNELEIKALSL-RNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYL 201

Query: 543 DVSKNNFQG--HIPLEIGDILSRLTVFNISMNALDG-------SIPSSFGNMNFLQFLDL 593
           ++   N       PL + ++ S +       + L          +      ++ ++F D 
Sbjct: 202 ELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDC 261

Query: 594 SNNQLT-------GEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNH 646
           + N L          + E   +  V++R L +    L   + +    L  +  + +E + 
Sbjct: 262 TLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSK 321

Query: 647 FVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRW---LGNLTVLRHIIMPKNHIE--GPIPL 701
                        SL+ L LS N +  +  +     G    L+ +++ +NH+        
Sbjct: 322 VFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGE 381

Query: 702 EFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCL--TLMI 759
               L+ L  LDIS N       SC     +  ++LS   +           C+  TL +
Sbjct: 382 ILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIR------VVKTCIPQTLEV 435

Query: 760 LDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHI 819
           LD+S N+L+ +       L +L  L ++ N L+  +P        L ++ +S N L    
Sbjct: 436 LDVSNNNLD-SFS---LFLPRLQELYISRNKLK-TLP-DASLFPVLLVMKISRNQLKSVP 489

Query: 820 PSCFDNTT 827
              FD  T
Sbjct: 490 DGIFDRLT 497

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  141 bits (358), Expect = 2e-35
 Identities = 84/460 (18%), Positives = 159/460 (34%), Gaps = 68/460 (14%)

Query: 533 IHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLD 592
           + +   L++L +  +     I  +    L  L   ++S N L     S FG ++ L++L+
Sbjct: 46  LRACANLQVLILKSSRIN-TIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLN 104

Query: 593 LSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNF-NLTNLIWLQLEGNHFVGEI 651
           L  N         L     +L++L + N      +   +F  LT+L  L+++        
Sbjct: 105 LMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQ 164

Query: 652 PQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEG-----------PIP 700
            QSL     +  L L  +  +  +  +   L+ +R++ +   ++               P
Sbjct: 165 SQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSP 224

Query: 701 LEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNML-------HGQLKEGTFFN 753
           ++    R   + D S N +   L    +   +E    + N L          + E     
Sbjct: 225 MKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVE 284

Query: 754 CLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCR-LNQLQLLDLSN 812
            +T+  L +   +L  ++      L ++  + + ++ +   VP    + L  L+ LDLS 
Sbjct: 285 TVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSE 343

Query: 813 NNL---HGHIPSCFDN----TTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDF 865
           N +   +    +C        TL    N+  S+Q      + +                 
Sbjct: 344 NLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTL----------------- 386

Query: 866 TTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFS 925
                         +L S LD+S N     +P       K++ LNLS   +         
Sbjct: 387 -------------KNLTS-LDISRNT-FHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQ 431

Query: 926 NLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLS 965
            L   E LD+S N L       L  L  L    ++ N L 
Sbjct: 432 TL---EVLDVSNNNLD-SFSLFLPRLQEL---YISRNKLK 464

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  139 bits (353), Expect = 1e-34
 Identities = 71/438 (16%), Positives = 142/438 (32%), Gaps = 53/438 (12%)

Query: 539 LRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQL 598
           ++ LD+S N    +I        + L V  +  + ++     +F ++  L+ LDLS+N L
Sbjct: 28  MKSLDLSFNKIT-YIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHL 86

Query: 599 TGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNF-NLTNLIWLQLEGNHFVGEIP-QSLS 656
           +  +         SL+ L L  N  +    +  F NLTNL  L++       EI     +
Sbjct: 87  S-SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFA 145

Query: 657 KCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISD 716
             +SL  L +   SL     + L ++  + H+ +  +     + +    L  ++ L++ D
Sbjct: 146 GLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRD 205

Query: 717 NNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVD 776
            N++    S      +             L + +F   L L+   L  + +        D
Sbjct: 206 TNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVE------FD 259

Query: 777 GLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDN----TTLHERY 832
             +         +  +    +       ++ L +    L   + + +        +    
Sbjct: 260 DCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVEN 319

Query: 833 NNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRL 892
           +    +                                           L  LDLS N +
Sbjct: 320 SKVFLVPC--------------------SFSQHLKS-------------LEFLDLSENLM 346

Query: 893 IGHIPPQ---IGNLTKIQTLNLSHNNLA--GPIPSTFSNLRNIESLDLSYNKLSWKIPYQ 947
           +          G    +QTL LS N+L            L+N+ SLD+S N     +P  
Sbjct: 347 VEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHP-MPDS 405

Query: 948 LVELNTLAVFSVAYNNLS 965
                 +   +++   + 
Sbjct: 406 CQWPEKMRFLNLSSTGIR 423

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  131 bits (331), Expect = 5e-32
 Identities = 64/387 (16%), Positives = 119/387 (30%), Gaps = 28/387 (7%)

Query: 588 LQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNN---LEGHMFSRNFNLTNLIWLQLEG 644
               D  +   T  IP  L     +++SL LS N    +            NL  L L+ 
Sbjct: 7   SGVCDGRSRSFT-SIPSGL---TAAMKSLDLSFNKITYIGHGDLR---ACANLQVLILKS 59

Query: 645 NHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHI-EGPIPLEF 703
           +        +     SL+ L LS+N LS     W G L+ L+++ +  N      +   F
Sbjct: 60  SRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLF 119

Query: 704 CQLRILQILDISDNNISGSLPSCY--DFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILD 761
             L  LQ L I +      +          + ++ +    L    +  +  +   +  L 
Sbjct: 120 PNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLR-NYQSQSLKSIRDIHHLT 178

Query: 762 LSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPS 821
           L  +     +    D LS + YL L   NL       L        +             
Sbjct: 179 LHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDE 238

Query: 822 CFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSL 881
            F+   L +       L   E     + G+      +     +                 
Sbjct: 239 SFNE--LLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVT--------- 287

Query: 882 LSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLS 941
           +  L +    L   +      L K++ + + ++ +     S   +L+++E LDLS N + 
Sbjct: 288 IRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMV 347

Query: 942 WKIPYQLVELNTLA---VFSVAYNNLS 965
            +                  ++ N+L 
Sbjct: 348 EEYLKNSACKGAWPSLQTLVLSQNHLR 374

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  114 bits (287), Expect = 2e-26
 Identities = 70/445 (15%), Positives = 150/445 (33%), Gaps = 45/445 (10%)

Query: 92  LNASLFTPFQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSIL-SSLA 150
           L++S F P   L+ L+L  N     +    L     L+NL+ L +      + I     A
Sbjct: 89  LSSSWFGPLSSLKYLNLMGNPYQ-TLGVTSL--FPNLTNLQTLRIGNVETFSEIRRIDFA 145

Query: 151 RLSSLTSLDLSANRLKGSIDIKGPKRLSRLNNLKVFDLSGNLFNNSILSSLARLSSLRSL 210
            L+SL  L++ A  L+ +      + L  + ++    L  +     +      LSS+R L
Sbjct: 146 GLTSLNELEIKALSLR-NYQ---SQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYL 201

Query: 211 LLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNF---------EVPQACSGLRKLSYLH 261
            L D  L                 +                   ++ +    L ++ +  
Sbjct: 202 ELRDTNLA-RFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDD 260

Query: 262 LLRVGIRD-GSKLLQSMGSFPSLNTLDLSYNNFTETVTTTTQG--FPHFKSLKELYMDDA 318
               G+ D        +     + T+ +   +  +          +   + +K + ++++
Sbjct: 261 CTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENS 320

Query: 319 RIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLR--G 376
           ++           + + S+++L LS + +                LQ L ++ N LR   
Sbjct: 321 KV---FLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQ 377

Query: 377 SLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQ-IPISLEPLFNH 435
                L  + +L  LD+S N                +  L LS    + +   +      
Sbjct: 378 KTGEILLTLKNLTSLDISRNTF--HPMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQ---- 431

Query: 436 SRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRL 495
             L++ D  NN ++       S +    +LQ L +S      +           L  +++
Sbjct: 432 -TLEVLDVSNNNLD-------SFSLFLPRLQELYISRNKLKTLPDASLFPV---LLVMKI 480

Query: 496 SHIKMNEEFPNWLLENNTKLRQLSL 520
           S  ++    P+ + +  T L+++ L
Sbjct: 481 SRNQLK-SVPDGIFDRLTSLQKIWL 504

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 98.6 bits (246), Expect = 2e-21
 Identities = 55/335 (16%), Positives = 117/335 (34%), Gaps = 38/335 (11%)

Query: 92  LNASLFTPFQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNN-------S 144
           L          +  L+LRD ++A   +   L      S +K L   G++  +        
Sbjct: 187 LLEIFADILSSVRYLELRDTNLA-RFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLK 245

Query: 145 ILSSLARLSSLTSLDLSANRLK--GSIDIKGPKRLSRLN--NLKVFDLSGNLFNNSILSS 200
           +L  +  LS +   D + N L      +      L ++    ++   +        + + 
Sbjct: 246 LLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTV 305

Query: 201 LARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDN--FEVPQACSGLRKLS 258
            + L  ++ + + ++++   +       L +LE LD+S N +     +          L 
Sbjct: 306 YSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQ 364

Query: 259 YLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDA 318
            L L +  +R   K  + + +  +L +LD+S N F              + ++ L +   
Sbjct: 365 TLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH----PMPDSCQWPEKMRFLNLSST 420

Query: 319 RIA------------LNTSFLQI--IGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHL 364
            I             L+ S   +      +P +Q L +S     N  +TL         L
Sbjct: 421 GIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISR----NKLKTLPDAS-LFPVL 475

Query: 365 QELHMADNDLRGSLPWCLANMTSLRILDVSSNQLI 399
             + ++ N L+         +TSL+ + + +N   
Sbjct: 476 LVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 510

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 65.5 bits (160), Expect = 6e-11
 Identities = 35/220 (15%), Positives = 67/220 (30%), Gaps = 42/220 (19%)

Query: 752 FNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLS 811
            +C    + D        +IP  +   + +  L L+ N +       L     LQ+L L 
Sbjct: 2   LSCDASGVCDGRSRSFT-SIPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILK 58

Query: 812 NNNLHGHIPSCFDN----TTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTT 867
           ++ ++      F +      L    N+ SSL                        F   +
Sbjct: 59  SSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSS--------------------SWFGPLS 98

Query: 868 KSITYTYQGRVPSLLSGLDLSCNRLIG-HIPPQIGNLTKIQTLNLSHNNLAGPIP-STFS 925
                         L  L+L  N      +     NLT +QTL + +      I    F+
Sbjct: 99  S-------------LKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFA 145

Query: 926 NLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLS 965
            L ++  L++    L       L  +  +   ++  +  +
Sbjct: 146 GLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA 185

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 56.7 bits (137), Expect = 3e-08
 Identities = 36/176 (20%), Positives = 61/176 (34%), Gaps = 29/176 (16%)

Query: 68  SCNNTMGRVVVLDLSQTHRGEYWYLNASLFTPFQQLESLDLRDNDIAGCVENEGLERLSR 127
           +C      +  L LSQ H          +    + L SLD+  N       +   +    
Sbjct: 355 ACKGAWPSLQTLVLSQNHLRSMQKT-GEILLTLKNLTSLDISRNTF-----HPMPDSCQW 408

Query: 128 LSNLKMLNLVGN-----------------LFNNSILSSLARLSSLTSLDLSANRLKGSID 170
              ++ LNL                    + NN++ S    L  L  L +S N+LK ++ 
Sbjct: 409 PEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLK-TLP 467

Query: 171 IKGPKRLSRLNNLKVFDLSGNLFNNSILSSLARLSSLRSLLLYDNRLEGSIDVKEF 226
                  S    L V  +S N   +       RL+SL+ + L+ N  + S    ++
Sbjct: 468 -----DASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDY 518

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  147 bits (372), Expect = 1e-37
 Identities = 67/393 (17%), Positives = 133/393 (33%), Gaps = 30/393 (7%)

Query: 556 EIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRS 615
           EI    +R  +  ++ ++L  ++ S   +   ++ LDLS N L+      LA     L  
Sbjct: 4   EIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLA-PFTKLEL 62

Query: 616 LALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKI 675
           L LS+N L         +L+ L  L L  N+      Q L    S++ L  +NN++S   
Sbjct: 63  LNLSSNVLYE--TLDLESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNISRVS 115

Query: 676 PRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVC---I 732
                    +    +  N I     L+      +Q LD+  N I  ++           +
Sbjct: 116 CSRGQGKKNIY---LANNKITMLRDLDEGCRSRVQYLDLKLNEID-TVNFAELAASSDTL 171

Query: 733 EQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLE 792
           E ++L  N ++  +K         L  LDLS N L   +       + ++++ L +N L 
Sbjct: 172 EHLNLQYNFIY-DVKGQVV--FAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV 227

Query: 793 GEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMD 852
             +   L     L+  DL  N  H     C        +     ++       +     +
Sbjct: 228 -LIEKALRFSQNLEHFDLRGNGFH-----CGTLRDFFSKNQRVQTVAKQTVKKLTGQNEE 281

Query: 853 VDPKKQILESFDFTTKSITYTYQGRVPSL----LSGLDLSCNRLIGHIPPQIGNLTKIQT 908
                 +     +  + +   +  R+ +L     + L    +     +  +  N  + + 
Sbjct: 282 ECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSE-TERLECERENQARQRE 340

Query: 909 LNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLS 941
           ++         I       +   +L+     L 
Sbjct: 341 IDALKEQYRTVIDQVTLRKQAKITLEQKKKALD 373

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  121 bits (305), Expect = 5e-29
 Identities = 58/475 (12%), Positives = 129/475 (27%), Gaps = 41/475 (8%)

Query: 128 LSNLKMLNLVGNLFNNSILSSLARLSSLTSLDLSANRLKGSIDIKGPKRLSRLNNLKVFD 187
            +  K+  +  +    ++ S      ++  LDLS N L           L+    L++ +
Sbjct: 9   GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQIS----AADLAPFTKLELLN 64

Query: 188 LSGNLFNNSILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEV 247
           LS N+        L  LS+LR+L L +N +      +E     ++E L  + N I     
Sbjct: 65  LSSNVLYE--TLDLESLSTLRTLDLNNNYV------QELLVGPSIETLHAANNNISRVSC 116

Query: 248 PQACSGLRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTETVTTTTQGFPHF 307
               S  +    ++L    I     L    G    +  LDL  N                
Sbjct: 117 ----SRGQGKKNIYLANNKITMLRDL--DEGCRSRVQYLDLKLNEIDTVNFAEL--AASS 168

Query: 308 KSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQEL 367
            +L+ L +    I         +      ++ L LS+    N    +         +  +
Sbjct: 169 DTLEHLNLQYNFI---YDVKGQV--VFAKLKTLDLSS----NKLAFMGPEFQSAAGVTWI 219

Query: 368 HMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPI 427
            + +N L   +   L    +L   D+  N                ++ +          +
Sbjct: 220 SLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKK---L 275

Query: 428 SLEPLFNHSRLKIFDAENNEINA--EIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLY 485
           + +     +   +                   +     +   L       + +   +   
Sbjct: 276 TGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQ 335

Query: 486 NQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVS 545
            +     +     +      + +         L     +L         +H +L      
Sbjct: 336 AR--QREIDALKEQY-RTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQ 392

Query: 546 KNNFQGHIPLEIGDILSRLTVFNISMNALD-GSIPSSFGNMNFLQFLDLSNNQLT 599
                        +  S L +    +   +   +       N ++  D+  ++ T
Sbjct: 393 AV--GQIELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKET 445

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  118 bits (297), Expect = 5e-28
 Identities = 66/449 (14%), Positives = 141/449 (31%), Gaps = 63/449 (14%)

Query: 377 SLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQ--IPISLEPLFN 434
           ++     N    +I  V+ +  +    +S      ++++L LS N         L P   
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSS-LKQALASLRQSAWNVKELDLSGNPLSQISAADLAPF-- 57

Query: 435 HSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVR 494
            ++L++ +  +N +  E ++  SL+     L++L L+              N        
Sbjct: 58  -TKLELLNLSSNVLY-ETLDLESLS----TLRTLDLN-------------NNY------- 91

Query: 495 LSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIP 554
           +  +                +  L   N+++    R+     +  + + ++ N       
Sbjct: 92  VQEL-----------LVGPSIETLHAANNNIS---RVSCSRGQGKKNIYLANNKITMLRD 137

Query: 555 LEIGDILSRLTVFNISMNALDG-SIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSL 613
           L+ G   SR+   ++ +N +D  +      + + L+ L+L  N +  ++   +      L
Sbjct: 138 LDEGC-RSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQV--VFAKL 193

Query: 614 RSLALSNNNLEGHMFSRNF-NLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLS 672
           ++L LS+N L        F +   + W+ L  N  V  I ++L    +L+   L  N   
Sbjct: 194 KTLDLSSNKLA--FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH 250

Query: 673 -GKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVC 731
            G +  +      ++ +             E C +    +           LP+ +    
Sbjct: 251 CGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTV--PTLGHYGAYCCE-DLPAPFADRL 307

Query: 732 IEQVHLSKNMLHGQLK-----EGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLIL 786
           I        +L GQ       E    N      +D         I            L  
Sbjct: 308 IALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQ 367

Query: 787 AHNNLEGEVPIQLCRLNQLQLLDLSNNNL 815
               L+ +V        +L          
Sbjct: 368 KKKALDEQVSNGRRAHAELDGTLQQAVGQ 396

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  114 bits (286), Expect = 1e-26
 Identities = 59/399 (14%), Positives = 117/399 (29%), Gaps = 27/399 (6%)

Query: 434 NHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYV 493
           N +R KI    ++ +   +            ++ L LS      I+    L     LE +
Sbjct: 8   NGNRYKIEKVTDSSLKQALASLRQSAW---NVKELDLSGNPLSQIS-AADLAPFTKLELL 63

Query: 494 RLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHI 553
            LS   + E      LE+ + LR L L N+ +       +     +  L  + NN    +
Sbjct: 64  NLSSNVLYETLD---LESLSTLRTLDLNNNYVQE-----LLVGPSIETLHAANNNIS-RV 114

Query: 554 PLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSL 613
               G     +    ++ N +        G  + +Q+LDL  N++       LA    +L
Sbjct: 115 SCSRGQGKKNI---YLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL 171

Query: 614 RSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSG 673
             L L  N +             L  L L  N     +       + +  + L NN L  
Sbjct: 172 EHLNLQYNFIY--DVKGQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV- 227

Query: 674 KIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISG-SLPSCYDFVCI 732
            I + L     L H  +  N        +F   +  ++  ++   +   +  +  +    
Sbjct: 228 LIEKALRFSQNLEHFDLRGNGFHCGTLRDF-FSKNQRVQTVAKQTVKKLTGQNEEECTVP 286

Query: 733 EQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGN----IPDRVDGLSQLSYLILAH 788
              H         L        + L   + +     G+    +    +  ++   +    
Sbjct: 287 TLGHYGAYCC-EDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALK 345

Query: 789 NNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTT 827
                 +     R      L+     L   + +      
Sbjct: 346 EQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHA 384

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  113 bits (285), Expect = 2e-26
 Identities = 65/489 (13%), Positives = 153/489 (31%), Gaps = 77/489 (15%)

Query: 330 IGESMPSIQYLSLSNSSVSNNSRTLDQG-LCPLVHLQELHMADNDLRGSLPWCLANMTSL 388
           I ++    +   +++    ++ +           +++EL ++ N L       LA  T L
Sbjct: 5   IKQNGNRYKIEKVTD----SSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 389 RILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEI 448
            +L++SSN L     +  L  L+++  L L++N+      ++ L     ++   A NN I
Sbjct: 61  ELLNLSSNVL---YETLDLESLSTLRTLDLNNNY------VQELLVGPSIETLHAANNNI 111

Query: 449 NAEIIESHSLTTPNFQ-LQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNW 507
           +        ++    Q  +++ L+              N+       ++ +       + 
Sbjct: 112 S-------RVSCSRGQGKKNIYLA-------------NNK-------ITML------RDL 138

Query: 508 LLENNTKLRQLSLVNDSLVG-PFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTV 566
                ++++ L L  + +    F     S   L  L++  N     +  ++    ++L  
Sbjct: 139 DEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQVV--FAKLKT 195

Query: 567 FNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGH 626
            ++S N L   +   F +   + ++ L NN+L   I + L     +L    L  N     
Sbjct: 196 LDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALR-FSQNLEHFDLRGNGFH-C 251

Query: 627 MFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLR 686
              R+F   N     +          Q+  +C+                  +   L  L+
Sbjct: 252 GTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALK 311

Query: 687 HIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQL 746
                               +   +L    +          +     ++   K      +
Sbjct: 312 -------------------RKEHALLSGQGSETERLECERENQARQREIDALKEQYR-TV 351

Query: 747 KEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQ 806
            +         + L+     L+  + +     ++L   +        E+       + LQ
Sbjct: 352 IDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQI-ELQHATEEQSPLQ 410

Query: 807 LLDLSNNNL 815
           LL       
Sbjct: 411 LLRAIVKRY 419

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  102 bits (256), Expect = 7e-23
 Identities = 60/452 (13%), Positives = 134/452 (29%), Gaps = 41/452 (9%)

Query: 92  LNASLFTPFQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILSSLAR 151
           ++A+   PF +LE L+L  N +           L  LS L+ L+L  N      +  L  
Sbjct: 49  ISAADLAPFTKLELLNLSSNVL------YETLDLESLSTLRTLDLNNNY-----VQELLV 97

Query: 152 LSSLTSLDLSANRLKGSIDIKGPKRLSRLNNLKVFDLSGNLFNNSILSSLARLSSLRSLL 211
             S+ +L  + N +   +        SR    K   L+ N             S ++ L 
Sbjct: 98  GPSIETLHAANNNIS-RVS------CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLD 150

Query: 212 LYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGIRDGS 271
           L  N ++     +   S   LE L++ YN I + +         KL  L L    +   +
Sbjct: 151 LKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVK---GQVVFAKLKTLDLSSNKL---A 204

Query: 272 KLLQSMGSFPSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDARIALNTSFLQIIG 331
            +     S   +  + L  N          +     ++L+   +       +   L+   
Sbjct: 205 FMGPEFQSAAGVTWISLRNNKL----VLIEKALRFSQNLEHFDLRGNG--FHCGTLRDFF 258

Query: 332 ESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRIL 391
                +Q ++             +  +  L H       D     +            +L
Sbjct: 259 SKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALL 318

Query: 392 DVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEIN-- 449
               ++           +     ++      ++  +  +           + +   ++  
Sbjct: 319 SGQGSET--ERLECERENQARQREIDALKEQYRT-VIDQVTLRKQAKITLEQKKKALDEQ 375

Query: 450 -----AEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEF 504
                    E             L  ++  +  +   + +  +++  YV    ++ N   
Sbjct: 376 VSNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIR 435

Query: 505 PNWLLENN-TKLRQLSLVNDSLVGPFRLPIHS 535
              + ++  T+L + +     L G   L + S
Sbjct: 436 DWDMYQHKETQLAEENARLKKLNGEADLALAS 467

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  100 bits (251), Expect = 3e-22
 Identities = 57/457 (12%), Positives = 138/457 (30%), Gaps = 43/457 (9%)

Query: 226 FDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNT 285
             + +  +   ++ + +              +  L L    +   S     +  F  L  
Sbjct: 6   KQNGNRYKIEKVTDSSLKQAL-ASLRQSAWNVKELDLSGNPLSQISA--ADLAPFTKLEL 62

Query: 286 LDLSYNNFTETVTTTTQGFPHFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNS 345
           L+LS N   E     T       +L+ L +++  +              PSI+ L  +N 
Sbjct: 63  LNLSSNVLYE-----TLDLESLSTLRTLDLNNNYV---QEL-----LVGPSIETLHAAN- 108

Query: 346 SVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSS 405
              NN   +          + +++A+N +           + ++ LD+  N++     + 
Sbjct: 109 ---NNISRVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAE 163

Query: 406 PLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQL 465
                 ++E L L  N       ++     ++LK  D  +N++     E  S       +
Sbjct: 164 LAASSDTLEHLNLQYNFIY---DVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAA----GV 216

Query: 466 QSLLLSSGYRDGIT-FPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDS 524
             + L +   + +    K L    +LE+  L     +          N +++ ++    +
Sbjct: 217 TWISLRN---NKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVA--KQT 271

Query: 525 LVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGS----IPS 580
           +               L        +  +P    D L  L     ++ +  GS    +  
Sbjct: 272 VKKLTGQNEEECTVPTLGHYGAYCCE-DLPAPFADRLIALKRKEHALLSGQGSETERLEC 330

Query: 581 SFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWL 640
              N    + +D    Q    + + + +   +  +L      L+  + +       L   
Sbjct: 331 ERENQARQREIDALKEQYR-TVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGT 389

Query: 641 QLEGNH--FVGEIPQSLSKCSSLQGLFLSNNSLSGKI 675
             +      +    +  S    L+ +      +  + 
Sbjct: 390 LQQAVGQIELQHATEEQSPLQLLRAIVKRYEEMYVEQ 426

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 82.2 bits (203), Expect = 2e-16
 Identities = 38/219 (17%), Positives = 74/219 (33%), Gaps = 24/219 (10%)

Query: 751 FFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDL 810
             N     I  ++ + L   +         +  L L+ N L       L    +L+LL+L
Sbjct: 6   KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65

Query: 811 SNNNLHGHIPSCFDNTTLHE---RYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTT 867
           S+N L+         +TL       N    L    +                +E+     
Sbjct: 66  SSNVLY-ETLDLESLSTLRTLDLNNNYVQELLVGPS----------------IETLHAAN 108

Query: 868 KSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAG-PIPSTFSN 926
            +I+     R     + + L+ N++        G  +++Q L+L  N +         ++
Sbjct: 109 NNISRVSCSRGQGKKN-IYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAAS 167

Query: 927 LRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLS 965
              +E L+L YN +   +    V    L    ++ N L+
Sbjct: 168 SDTLEHLNLQYNFIY-DVK-GQVVFAKLKTLDLSSNKLA 204

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 51.0 bits (122), Expect = 1e-06
 Identities = 15/67 (22%), Positives = 29/67 (43%)

Query: 900 IGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSV 959
             N  + +   ++ ++L   + S   +  N++ LDLS N LS      L     L + ++
Sbjct: 6   KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65

Query: 960 AYNNLSG 966
           + N L  
Sbjct: 66  SSNVLYE 72

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  138 bits (350), Expect = 8e-36
 Identities = 67/349 (19%), Positives = 134/349 (38%), Gaps = 46/349 (13%)

Query: 100 FQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILSSLARLSSLTSLD 159
             +     L+   +        +     L ++  L + G    +  +  +  L++L  L+
Sbjct: 21  LAEGIRAVLQKASV------TDVVTQEELESITKLVVAGEKVAS--IQGIEYLTNLEYLN 72

Query: 160 LSANRLKGSIDIKGPKRLSRLNNLKVFDLSGNLFNNSILSSLARLSSLRSLLLYDNRLEG 219
           L+ N++           LS L  L    +  N    + +S+L  L++LR L L ++ +  
Sbjct: 73  LNGNQITDISP------LSNLVKLTNLYIGTNKI--TDISALQNLTNLRELYLNEDNIS- 123

Query: 220 SIDVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGIRDGSKLLQSMGS 279
             D+    +L+ +  L++  N           S +  L+YL +    ++D    +  + +
Sbjct: 124 --DISPLANLTKMYSLNLGANHN--LSDLSPLSNMTGLNYLTVTESKVKD----VTPIAN 175

Query: 280 FPSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDARIALNTSFLQIIGESMPSIQY 339
              L +L L+YN   +             SL        +I   T        +M  +  
Sbjct: 176 LTDLYSLSLNYNQIED-----ISPLASLTSLHYFTAYVNQITDITPV-----ANMTRLNS 225

Query: 340 LSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLI 399
           L + N+ +++ S      L  L  L  L +  N +   +   + ++T L++L+V SNQ I
Sbjct: 226 LKIGNNKITDLS-----PLANLSQLTWLEIGTNQIS-DIN-AVKDLTKLKMLNVGSNQ-I 277

Query: 400 GSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEI 448
             I  S L +L+ +  L L++N       +E +   + L       N I
Sbjct: 278 SDI--SVLNNLSQLNSLFLNNNQLGN-EDMEVIGGLTNLTTLFLSQNHI 323

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  137 bits (348), Expect = 2e-35
 Identities = 66/323 (20%), Positives = 131/323 (40%), Gaps = 43/323 (13%)

Query: 100 FQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILSSLARLSSLTSLD 159
              LE L+L  N I        +  LS L  L  L +  N    + +S+L  L++L  L 
Sbjct: 65  LTNLEYLNLNGNQI------TDISPLSNLVKLTNLYIGTNKI--TDISALQNLTNLRELY 116

Query: 160 LSANRLKGSIDIKGPKRLSRLNNLKVFDLSGNLFNNSILSSLARLSSLRSLLLYDNRLEG 219
           L+ + +     +        L  +   +L  N  N S LS L+ ++ L  L + +++++ 
Sbjct: 117 LNEDNISDISPLAN------LTKMYSLNLGANH-NLSDLSPLSNMTGLNYLTVTESKVK- 168

Query: 220 SIDVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGIRDGSKLLQSMGS 279
             DV    +L++L  L ++YN+I++       + L  L Y       I D    +  + +
Sbjct: 169 --DVTPIANLTDLYSLSLNYNQIEDIS---PLASLTSLHYFTAYVNQITD----ITPVAN 219

Query: 280 FPSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDARIALNTSFLQIIGESMPSIQY 339
              LN+L +  N  T+          +   L  L +   +I+   +      + +  ++ 
Sbjct: 220 MTRLNSLKIGNNKITD-----LSPLANLSQLTWLEIGTNQISDINAV-----KDLTKLKM 269

Query: 340 LSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLI 399
           L++ ++ +S+ S      L  L  L  L + +N L       +  +T+L  L +S N + 
Sbjct: 270 LNVGSNQISDIS-----VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHI- 323

Query: 400 GSISSSPLIHLTSIEDLILSDNH 422
                 PL  L+ ++    ++  
Sbjct: 324 --TDIRPLASLSKMDSADFANQV 344

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  133 bits (336), Expect = 7e-34
 Identities = 67/353 (18%), Positives = 141/353 (39%), Gaps = 48/353 (13%)

Query: 103 LESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILSSLARLSSLTSLDLSA 162
             +L      I        +   + L+      L      +  + +   L S+T L ++ 
Sbjct: 2   AATLATLPAPI------NQIFPDADLAEGIRAVLQKASVTD--VVTQEELESITKLVVAG 53

Query: 163 NRLKGSIDIKGPKRLSRLNNLKVFDLSGNLFNNSILSSLARLSSLRSLLLYDNRLEGSID 222
            ++     I+G   +  L NL+  +L+GN   +  +S L+ L  L +L +  N++    D
Sbjct: 54  EKVA---SIQG---IEYLTNLEYLNLNGNQITD--ISPLSNLVKLTNLYIGTNKIT---D 102

Query: 223 VKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGIRDGSKLLQSMGSFPS 282
           +    +L+NL EL ++ + I +       S L  L+ ++ L +G       L  + +   
Sbjct: 103 ISALQNLTNLRELYLNEDNISDI------SPLANLTKMYSLNLGANHNLSDLSPLSNMTG 156

Query: 283 LNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSL 342
           LN L ++ +              +   L  L ++  +I   +        S+ S+ Y + 
Sbjct: 157 LNYLTVTESKV-----KDVTPIANLTDLYSLSLNYNQIEDISPL-----ASLTSLHYFTA 206

Query: 343 SNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSI 402
             + +++ +      +  +  L  L + +N +    P  LAN++ L  L++ +NQ+    
Sbjct: 207 YVNQITDIT-----PVANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQI---S 256

Query: 403 SSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIES 455
             + +  LT ++ L +  N       +  L N S+L      NN++  E +E 
Sbjct: 257 DINAVKDLTKLKMLNVGSNQIS---DISVLNNLSQLNSLFLNNNQLGNEDMEV 306

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  131 bits (332), Expect = 2e-33
 Identities = 74/390 (18%), Positives = 140/390 (35%), Gaps = 63/390 (16%)

Query: 580 SSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIW 639
               ++       L    +T  + +       S+  L ++   +          LTNL +
Sbjct: 16  FPDADLAEGIRAVLQKASVTDVVTQE---ELESITKLVVAGEKVAS--IQGIEYLTNLEY 70

Query: 640 LQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPI 699
           L L GN      P  LS    L  L++  N ++      L NLT LR + + +++I    
Sbjct: 71  LNLNGNQITDISP--LSNLVKLTNLYIGTNKIT--DISALQNLTNLRELYLNEDNISDIS 126

Query: 700 PLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLT-LM 758
           PL    L  +  L++  N+    L    +   +  + ++++    ++K+ T    LT L 
Sbjct: 127 PLA--NLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTES----KVKDVTPIANLTDLY 180

Query: 759 ILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGH 818
            L L+YN +    P  +  L+ L Y     N +    P  +  + +L  L + NN +   
Sbjct: 181 SLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITD- 235

Query: 819 IPSCFDNTTLHE---RYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQ 875
           +    + + L       N  S +   +                                 
Sbjct: 236 LSPLANLSQLTWLEIGTNQISDINAVKDL------------------------------- 264

Query: 876 GRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDL 935
               + L  L++  N+ I  I   + NL+++ +L L++N L          L N+ +L L
Sbjct: 265 ----TKLKMLNVGSNQ-ISDISV-LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFL 318

Query: 936 SYNKLSWKIPYQLVELNTLAVFSVAYNNLS 965
           S N ++   P  L  L+ +     A   + 
Sbjct: 319 SQNHITDIRP--LASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  131 bits (331), Expect = 3e-33
 Identities = 83/379 (21%), Positives = 136/379 (35%), Gaps = 34/379 (8%)

Query: 342 LSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGS 401
            +  +              L       +    +   +      + S+  L V+  + + S
Sbjct: 2   AATLATLPAPINQIFPDADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEK-VAS 58

Query: 402 ISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTP 461
           I    + +LT++E L L+ N       + PL N  +L       N+I  +I    +LT  
Sbjct: 59  IQ--GIEYLTNLEYLNLNGNQIT---DISPLSNLVKLTNLYIGTNKIT-DISALQNLT-- 110

Query: 462 NFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLV 521
              L+ L L     D I+    L N   +  + L       +     L N T L  L++ 
Sbjct: 111 --NLRELYL---NEDNISDISPLANLTKMYSLNLGANHNLSDLSP--LSNMTGLNYLTVT 163

Query: 522 NDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSS 581
              +      PI +   L  L ++ N  +   PL     L+ L  F   +N +    P  
Sbjct: 164 ESKVKDVT--PIANLTDLYSLSLNYNQIEDISPL---ASLTSLHYFTAYVNQITDITP-- 216

Query: 582 FGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQ 641
             NM  L  L + NN++T   P         L  L +  N +     +   +LT L  L 
Sbjct: 217 VANMTRLNSLKIGNNKITDLSPLA---NLSQLTWLEIGTNQISD--INAVKDLTKLKMLN 271

Query: 642 LEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPL 701
           +  N         L+  S L  LFL+NN L  +    +G LT L  + + +NHI    PL
Sbjct: 272 VGSNQISD--ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRPL 329

Query: 702 EFCQLRILQILDISDNNIS 720
               L  +   D ++  I 
Sbjct: 330 A--SLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  127 bits (321), Expect = 5e-32
 Identities = 76/400 (19%), Positives = 154/400 (38%), Gaps = 59/400 (14%)

Query: 416 LILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYR 475
           L            + P  + +       +   +  +++    L      +  L+++    
Sbjct: 5   LATLPAPIN---QIFPDADLAEGIRAVLQKASVT-DVVTQEELE----SITKLVVAG--- 53

Query: 476 DGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHS 535
           + +   + +    +LEY+ L+  ++ +  P   L N  KL  L +  + +       + +
Sbjct: 54  EKVASIQGIEYLTNLEYLNLNGNQITDISP---LSNLVKLTNLYIGTNKITDI--SALQN 108

Query: 536 HKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSN 595
              LR L ++++N     PL     L+++   N+  N    S  S   NM  L +L ++ 
Sbjct: 109 LTNLRELYLNEDNISDISPL---ANLTKMYSLNLGANHN-LSDLSPLSNMTGLNYLTVTE 164

Query: 596 NQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSL 655
           +++    P  +A     L SL+L+ N +E    S   +LT+L +     N      P  +
Sbjct: 165 SKVKDVTP--IA-NLTDLYSLSLNYNQIED--ISPLASLTSLHYFTAYVNQITDITP--V 217

Query: 656 SKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDIS 715
           +  + L  L + NN ++   P  L NL+ L  + +  N I     ++   L  L++L++ 
Sbjct: 218 ANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDINAVK--DLTKLKMLNVG 273

Query: 716 DNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRV 775
            N IS  +                             N   L  L L+ N L     + +
Sbjct: 274 SNQIS-DISV-------------------------LNNLSQLNSLFLNNNQLGNEDMEVI 307

Query: 776 DGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNL 815
            GL+ L+ L L+ N++    P+    L+++   D +N  +
Sbjct: 308 GGLTNLTTLFLSQNHITDIRPLA--SLSKMDSADFANQVI 345

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  123 bits (312), Expect = 9e-31
 Identities = 71/386 (18%), Positives = 133/386 (34%), Gaps = 63/386 (16%)

Query: 588 LQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHF 647
              L      +    P+             L   ++          L ++  L + G   
Sbjct: 2   AATLATLPAPINQIFPD---ADLAEGIRAVLQKASVTD--VVTQEELESITKLVVAGEKV 56

Query: 648 VGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLR 707
                Q +   ++L+ L L+ N ++   P  L NL  L ++ +  N I     L+   L 
Sbjct: 57  --ASIQGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDISALQ--NLT 110

Query: 708 ILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHL 767
            L+ L ++++NIS  +    +   +  ++L  N     L      N   L  L ++ + +
Sbjct: 111 NLRELYLNEDNIS-DISPLANLTKMYSLNLGANHNLSDLSP--LSNMTGLNYLTVTESKV 167

Query: 768 NGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDN-- 825
               P  +  L+ L  L L +N +E   P  L  L  L       N +    P    N  
Sbjct: 168 KDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMT 221

Query: 826 --TTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLS 883
              +L    N  + L P                   L                     L+
Sbjct: 222 RLNSLKIGNNKITDLSPLAN----------------LSQ-------------------LT 246

Query: 884 GLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWK 943
            L++  N++       + +LTK++ LN+  N ++    S  +NL  + SL L+ N+L  +
Sbjct: 247 WLEIGTNQISD--INAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNE 302

Query: 944 IPYQLVELNTLAVFSVAYNNLSGKIP 969
               +  L  L    ++ N+++   P
Sbjct: 303 DMEVIGGLTNLTTLFLSQNHITDIRP 328

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  123 bits (310), Expect = 2e-30
 Identities = 73/356 (20%), Positives = 131/356 (36%), Gaps = 29/356 (8%)

Query: 465 LQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDS 524
             +L       + I     L          L    + +       E    + +L +  + 
Sbjct: 2   AATLATLPAPINQIFPDADLAE---GIRAVLQKASVTDVVT---QEELESITKLVVAGEK 55

Query: 525 LVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGN 584
           +       I     L  L+++ N      PL     L +LT   I  N +  +  S+  N
Sbjct: 56  VASI--QGIEYLTNLEYLNLNGNQITDISPLSN---LVKLTNLYIGTNKI--TDISALQN 108

Query: 585 MNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEG 644
           +  L+ L L+ + ++   P  LA     + SL L  N+    + S   N+T L +L +  
Sbjct: 109 LTNLRELYLNEDNISDISP--LA-NLTKMYSLNLGANHNLSDL-SPLSNMTGLNYLTVTE 164

Query: 645 NHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFC 704
           +      P  ++  + L  L L+ N +    P  L +LT L +     N I    P+   
Sbjct: 165 SKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITPV--A 218

Query: 705 QLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSY 764
            +  L  L I +N I+  L    +   +  + +  N +          +   L +L++  
Sbjct: 219 NMTRLNSLKIGNNKIT-DLSPLANLSQLTWLEIGTNQIS---DINAVKDLTKLKMLNVGS 274

Query: 765 NHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIP 820
           N ++      ++ LSQL+ L L +N L  E    +  L  L  L LS N++    P
Sbjct: 275 NQISD--ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP 328

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  121 bits (307), Expect = 4e-30
 Identities = 73/419 (17%), Positives = 147/419 (35%), Gaps = 75/419 (17%)

Query: 207 LRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVG 266
             +L      +     +     L+      +    + +         L  ++ L +    
Sbjct: 2   AATLATLPAPIN---QIFPDADLAEGIRAVLQKASVTD---VVTQEELESITKLVVAGEK 55

Query: 267 IRDGSKLLQSMGSFPSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDARIALNTSF 326
           +      +Q +    +L  L+L+ N  T+          +   L  LY+           
Sbjct: 56  VAS----IQGIEYLTNLEYLNLNGNQITDI-----SPLSNLVKLTNLYI----------- 95

Query: 327 LQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMT 386
                                  N  T    L  L +L+EL++ ++++    P  LAN+T
Sbjct: 96  ---------------------GTNKITDISALQNLTNLRELYLNEDNISDISP--LANLT 132

Query: 387 SLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAENN 446
            +  L++ +N  +  +S  PL ++T +  L ++++  +    + P+ N + L       N
Sbjct: 133 KMYSLNLGANHNLSDLS--PLSNMTGLNYLTVTESKVK---DVTPIANLTDLYSLSLNYN 187

Query: 447 EINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPN 506
           +I  +I    SLT     L          + IT    + N   L  +++ + K+ +  P 
Sbjct: 188 QIE-DISPLASLT----SLHYFTAYV---NQITDITPVANMTRLNSLKIGNNKITDLSP- 238

Query: 507 WLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTV 566
             L N ++L  L +  + +       +    +L++L+V  N       L     LS+L  
Sbjct: 239 --LANLSQLTWLEIGTNQISDIN--AVKDLTKLKMLNVGSNQISDISVLNN---LSQLNS 291

Query: 567 FNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIP-EHLAMGCVSLRSLALSNNNLE 624
             ++ N L        G +  L  L LS N +T   P   L      + S   +N  ++
Sbjct: 292 LFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRPLASL----SKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 98.8 bits (247), Expect = 3e-22
 Identities = 40/199 (20%), Positives = 86/199 (43%), Gaps = 24/199 (12%)

Query: 97  FTPFQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILSSLARLSSLT 156
                 L SL L  N I      E +  L+ L++L       N    + ++ +A ++ L 
Sbjct: 173 IANLTDLYSLSLNYNQI------EDISPLASLTSLHYFTAYVN--QITDITPVANMTRLN 224

Query: 157 SLDLSANRLKGSIDIKGPKRLSRLNNLKVFDLSGNLFNNSILSSLARLSSLRSLLLYDNR 216
           SL +  N++     +        L+ L   ++  N  ++  ++++  L+ L+ L +  N+
Sbjct: 225 SLKIGNNKITDLSPLAN------LSQLTWLEIGTNQISD--INAVKDLTKLKMLNVGSNQ 276

Query: 217 LEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGIRDGSKLLQS 276
           +    D+   ++LS L  L ++ N++ N E  +   GL  L+ L L +  I D    ++ 
Sbjct: 277 IS---DISVLNNLSQLNSLFLNNNQLGN-EDMEVIGGLTNLTTLFLSQNHITD----IRP 328

Query: 277 MGSFPSLNTLDLSYNNFTE 295
           + S   +++ D +     +
Sbjct: 329 LASLSKMDSADFANQVIKK 347

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  127 bits (322), Expect = 8e-32
 Identities = 64/338 (18%), Positives = 130/338 (38%), Gaps = 25/338 (7%)

Query: 509 LENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFN 568
           L+ +     + +   +    F     +    +++    +  +  +P  + D   ++ + N
Sbjct: 17  LQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLN 75

Query: 569 ISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLE---G 625
           ++   ++     +F   + +Q L +  N +   +P H+      L  L L  N+L     
Sbjct: 76  LNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLSSLPR 134

Query: 626 HMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVL 685
            +F    N   L  L +  N+       +    +SLQ L LS+N L+  +   L  +  L
Sbjct: 135 GIFH---NTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVD--LSLIPSL 188

Query: 686 RHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQ 745
            H  +  N +             ++ LD S N+I+  +      V +  + L  N L   
Sbjct: 189 FHANVSYNLLS-----TLAIPIAVEELDASHNSIN-VVRG-PVNVELTILKLQHNNLT-- 239

Query: 746 LKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQL 805
                  N   L+ +DLSYN L   +      + +L  L +++N L   + +    +  L
Sbjct: 240 -DTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTL 297

Query: 806 QLLDLSNNNLHGHIPSCFDNTTLHE---RYNNGSSLQP 840
           ++LDLS+N+L     +      L      +N+  +L+ 
Sbjct: 298 KVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLKL 335

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  123 bits (310), Expect = 3e-30
 Identities = 58/364 (15%), Positives = 125/364 (34%), Gaps = 44/364 (12%)

Query: 97  FTPFQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILSSLARLSSLT 156
                  + +  +++ +           L     +++LNL           + A   ++ 
Sbjct: 41  DITLNNQKIVTFKNSTMRKLPAAL----LDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQ 96

Query: 157 SLDLSANRLKGSIDIKGPKRLSRLNNLKVFDLSGNLFNNSILSSLARLSSLRSLLLYDNR 216
            L +  N ++  +    P     +  L V  L  N  ++           L +L + +N 
Sbjct: 97  KLYMGFNAIR-YLP---PHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNN 152

Query: 217 LEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGIRDGSKLLQ- 275
           LE  I+   F + ++L+ L +S N + + ++    S +  L + ++    +   +  +  
Sbjct: 153 LE-RIEDDTFQATTSLQNLQLSSNRLTHVDL----SLIPSLFHANVSYNLLSTLAIPIAV 207

Query: 276 -------------SMGSFPSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDARIAL 322
                               L  L L +NN T+T         ++  L E+ +    +  
Sbjct: 208 EELDASHNSINVVRGPVNVELTILKLQHNNLTDT-----AWLLNYPGLVEVDLSYNEL-- 260

Query: 323 NTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCL 382
               +      M  ++ L +SN    N    L+    P+  L+ L ++ N L   +    
Sbjct: 261 -EKIMYHPFVKMQRLERLYISN----NRLVALNLYGQPIPTLKVLDLSHNHLL-HVERNQ 314

Query: 383 ANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFD 442
                L  L +  N     I +  L    ++++L LS N +          N +R  + D
Sbjct: 315 PQFDRLENLYLDHNS----IVTLKLSTHHTLKNLTLSHNDWDCNSLRALFRNVARPAVDD 370

Query: 443 AENN 446
           A+ +
Sbjct: 371 ADQH 374

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  122 bits (309), Expect = 4e-30
 Identities = 79/382 (20%), Positives = 129/382 (33%), Gaps = 62/382 (16%)

Query: 568 NISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLE--- 624
           +I M   D         +N  + +   N+ +  ++P  L      +  L L++  +E   
Sbjct: 27  HIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEID 85

Query: 625 GHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTV 684
            + F+       +  L +  N      P        L  L L  N LS        N   
Sbjct: 86  TYAFA---YAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPK 142

Query: 685 LRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHG 744
           L  + M  N++E      F     LQ L +S N ++  +        +   ++S N+L  
Sbjct: 143 LTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVDL-SLIPSLFHANVSYNLLS- 199

Query: 745 QLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQ 804
                T    + +  LD S+N +N  +   V    +L+ L L HNNL  +    L     
Sbjct: 200 -----TLAIPIAVEELDASHNSIN-VVRGPV--NVELTILKLQHNNLT-DTA-WLLNYPG 249

Query: 805 LQLLDLSNNNLHGHIPSCFDN----TTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQIL 860
           L  +DLS N L   +   F        L+   N                          L
Sbjct: 250 LVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR-------------------------L 284

Query: 861 ESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPI 920
            + +   + I           L  LDLS N  + H+        +++ L L HN++    
Sbjct: 285 VALNLYGQPIPT---------LKVLDLSHNH-LLHVERNQPQFDRLENLYLDHNSIVTLK 334

Query: 921 PSTFSNLRNIESLDLSYNKLSW 942
            ST   L+N   L LS+N    
Sbjct: 335 LSTHHTLKN---LTLSHNDWDC 353

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  117 bits (294), Expect = 3e-28
 Identities = 72/357 (20%), Positives = 141/357 (39%), Gaps = 26/357 (7%)

Query: 462 NFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLV 521
           +     + +    +D     + +   +  + V   +  M  + P  LL++  ++  L+L 
Sbjct: 20  DCVFYDVHIDMQTQDVYFGFEDITLNN-QKIVTFKNSTM-RKLPAALLDSFRQVELLNLN 77

Query: 522 NDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSS 581
           +  +             ++ L +  N  + ++P  +   +  LTV  +  N L       
Sbjct: 78  DLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLSSLPRGI 136

Query: 582 FGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQ 641
           F N   L  L +SNN L   I +       SL++L LS+N L     S    + +L    
Sbjct: 137 FHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTHVDLS---LIPSLFHAN 192

Query: 642 LEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPL 701
           +  N        +L+   +++ L  S+NS++         LT+L+   +  N++      
Sbjct: 193 VSYNLL-----STLAIPIAVEELDASHNSINVVRGPVNVELTILK---LQHNNLT-DTA- 242

Query: 702 EFCQLRILQILDISDNNISGSLP--SCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMI 759
                  L  +D+S N +   +          +E++++S N L             TL +
Sbjct: 243 WLLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRLVAL--NLYGQPIPTLKV 299

Query: 760 LDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLH 816
           LDLS+NHL  ++        +L  L L HN++     ++L   + L+ L LS+N+  
Sbjct: 300 LDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV---TLKLSTHHTLKNLTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  115 bits (291), Expect = 8e-28
 Identities = 60/323 (18%), Positives = 110/323 (34%), Gaps = 36/323 (11%)

Query: 127 RLSNLKMLNLVGNLFNNSILSSLARLSSLTSLDLSANRLKGSIDIKGPKRLSRLNNLKVF 186
            L+N K++    +       + L     +  L+L+  +++  ID       +  + ++  
Sbjct: 43  TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-EID---TYAFAYAHTIQKL 98

Query: 187 DLSGNLFNNSILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFE 246
            +  N            +  L  L+L  N L  S+    F +   L  L MS N ++  E
Sbjct: 99  YMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIE 157

Query: 247 VPQACSGLRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTETVTTTTQGFPH 306
                     L  L L    +         +   PSL   ++SYN  +            
Sbjct: 158 -DDTFQATTSLQNLQLSSNRLTHVD-----LSLIPSLFHANVSYNLLST--------LAI 203

Query: 307 FKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQE 366
             +++EL      I        + G     +  L L +    NN       L     L E
Sbjct: 204 PIAVEELDASHNSIN------VVRGPVNVELTILKLQH----NNLTDTA-WLLNYPGLVE 252

Query: 367 LHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIP 426
           + ++ N+L   +      M  L  L +S+N+L     +     + +++ L LS NH    
Sbjct: 253 VDLSYNELEKIMYHPFVKMQRLERLYISNNRL--VALNLYGQPIPTLKVLDLSHNHLL-- 308

Query: 427 ISLEP-LFNHSRLKIFDAENNEI 448
             +E       RL+    ++N I
Sbjct: 309 -HVERNQPQFDRLENLYLDHNSI 330

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  111 bits (279), Expect = 4e-26
 Identities = 75/418 (17%), Positives = 145/418 (34%), Gaps = 58/418 (13%)

Query: 353 TLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTS 412
            +D  L       ++H+          +    + + +I+   ++  +  + ++ L     
Sbjct: 12  CIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNST-MRKLPAALLDSFRQ 70

Query: 413 IEDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSS 472
           +E L L+D   +  I          ++      N I    +  H        L  L+L  
Sbjct: 71  VELLNLNDLQIEE-IDTYAFAYAHTIQKLYMGFNAI--RYLPPHVFQNVP-LLTVLVLER 126

Query: 473 GYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLP 532
                        N        LS +      P  +  N  KL  LS+ N++L       
Sbjct: 127 -------------ND-------LSSL------PRGIFHNTPKLTTLSMSNNNLERIEDDT 160

Query: 533 IHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLD 592
             +   L+ L +S N    H+ L    ++  L   N+S N L     S+      ++ LD
Sbjct: 161 FQATTSLQNLQLSSNRLT-HVDL---SLIPSLFHANVSYNLL-----STLAIPIAVEELD 211

Query: 593 LSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIP 652
            S+N +   +   +    V L  L L +NNL     +   N   L+ + L  N     + 
Sbjct: 212 ASHNSIN-VVRGPV---NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMY 265

Query: 653 QSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQIL 712
               K   L+ L++SNN L   +  +   +  L+ + +  NH+   +     Q   L+ L
Sbjct: 266 HPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLLH-VERNQPQFDRLENL 323

Query: 713 DISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGN 770
            +  N+I  +L        ++ + LS N            N L  +  +++   ++  
Sbjct: 324 YLDHNSIV-TLKL-STHHTLKNLTLSHNDWD--------CNSLRALFRNVARPAVDDA 371

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  109 bits (275), Expect = 9e-26
 Identities = 61/365 (16%), Positives = 116/365 (31%), Gaps = 70/365 (19%)

Query: 612 SLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSL 671
               + +     + +    +  L N   +  + +         L     ++ L L++  +
Sbjct: 22  VFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQI 81

Query: 672 SGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVC 731
                        ++ + M  N I    P  F  + +L +L +  N++S           
Sbjct: 82  EEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS----------- 130

Query: 732 IEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRV-DGLSQLSYLILAHNN 790
                         L  G F N   L  L +S N+L   I D      + L  L L+ N 
Sbjct: 131 -------------SLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNR 176

Query: 791 LEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGG 850
           L     + L  +  L   ++S N L   +        L   +N+ + ++           
Sbjct: 177 LTH---VDLSLIPSLFHANVSYNLLS-TLAIPIAVEELDASHNSINVVRG---------- 222

Query: 851 MDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLN 910
                                      V   L+ L L  N L       + N   +  ++
Sbjct: 223 --------------------------PVNVELTILKLQHNNLTD--TAWLLNYPGLVEVD 254

Query: 911 LSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPE 970
           LS+N L   +   F  ++ +E L +S N+L   +      + TL V  +++N+L   +  
Sbjct: 255 LSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVER 312

Query: 971 RAAQF 975
              QF
Sbjct: 313 NQPQF 317

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  108 bits (273), Expect = 2e-25
 Identities = 54/350 (15%), Positives = 120/350 (34%), Gaps = 41/350 (11%)

Query: 125 LSRLSNLKMLNLVGNLFNNSILSSLARLSSLTSLDLSANRLKGSIDIKGPKRLSRLNNLK 184
           L        +++     +         L++   +    + ++  +       L     ++
Sbjct: 17  LQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLP---AALLDSFRQVE 72

Query: 185 VFDLSGNLFNNSILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDN 244
           + +L+          + A   +++ L +  N +   +    F ++  L  L +  N++ +
Sbjct: 73  LLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLSS 131

Query: 245 FEVPQACSGLRKLSYLHLLRVGIRD-GSKLLQSMGSFPSLNTLDLSYNNFTETVTTTTQG 303
                      KL+ L +    +        Q+     SL  L LS N  T         
Sbjct: 132 LP-RGIFHNTPKLTTLSMSNNNLERIEDDTFQAT---TSLQNLQLSSNRLTHV------D 181

Query: 304 FPHFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVH 363
                SL    +    +   ++          +++ L  S+    N+   +   +   V 
Sbjct: 182 LSLIPSLFHANVSYNLL---STL-----AIPIAVEELDASH----NSINVVRGPV--NVE 227

Query: 364 LQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHF 423
           L  L +  N+L     W L N   L  +D+S N+ +  I   P + +  +E L +S+N  
Sbjct: 228 LTILKLQHNNLT-DTAW-LLNYPGLVEVDLSYNE-LEKIMYHPFVKMQRLERLYISNNRL 284

Query: 424 Q-IPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSS 472
             + +  +P+     LK+ D  +N +    +E +        L++L L  
Sbjct: 285 VALNLYGQPI---PTLKVLDLSHNHL--LHVERNQPQFDR--LENLYLDH 327

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 99.3 bits (248), Expect = 3e-22
 Identities = 71/342 (20%), Positives = 128/342 (37%), Gaps = 68/342 (19%)

Query: 91  YLNASLFTPFQQLESLDLRDNDIAGCVENEGLER--LSRLSNLKMLNLVGNLFNNSILSS 148
           YL   +F     L  L L  ND+        L R        L  L++  N        +
Sbjct: 107 YLPPHVFQNVPLLTVLVLERNDL------SSLPRGIFHNTPKLTTLSMSNNNLERIEDDT 160

Query: 149 LARLSSLTSLDLSANRLKGSIDIKGPKRLSRLNNLKVFDLSGNLFNNSILSSLARLSSLR 208
               +SL +L LS+NRL   +D+     L   N      +S NL     LS+LA   ++ 
Sbjct: 161 FQATTSLQNLQLSSNRLT-HVDLSLIPSLFHAN------VSYNL-----LSTLAIPIAVE 208

Query: 209 SLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGIR 268
            L    N     I+V        L  L + +N + +                        
Sbjct: 209 ELDASHNS----INVVRGPVNVELTILKLQHNNLTD------------------------ 240

Query: 269 DGSKLLQSMGSFPSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDARIALNTSFLQ 328
                   + ++P L  +DLSYN   + +      F   + L+ LY+ + R+      L 
Sbjct: 241 -----TAWLLNYPGLVEVDLSYNELEKIMYHP---FVKMQRLERLYISNNRL----VALN 288

Query: 329 IIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSL 388
           + G+ +P+++ L LS+    N+   +++       L+ L++  N +  +L   L+   +L
Sbjct: 289 LYGQPIPTLKVLDLSH----NHLLHVERNQPQFDRLENLYLDHNSIV-TLK--LSTHHTL 341

Query: 389 RILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLE 430
           + L +S N    +   +   ++     +  +D H +I   LE
Sbjct: 342 KNLTLSHNDWDCNSLRALFRNVARP-AVDDADQHCKIDYQLE 382

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  128 bits (324), Expect = 2e-31
 Identities = 70/292 (23%), Positives = 127/292 (43%), Gaps = 12/292 (4%)

Query: 530 RLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQ 589
            +P     + RLLD+ KN  +  +  +       L    ++ N +    P +F N+  L+
Sbjct: 25  AVPEGIPTETRLLDLGKNRIK-TLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLR 83

Query: 590 FLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNL---EGHMFSRNFNLTNLIWLQLEGNH 646
            L L +N+L   IP  +  G  +L  L +S N +     +MF    +L NL  L++  N 
Sbjct: 84  TLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQ---DLYNLKSLEVGDND 139

Query: 647 FVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQL 706
            V    ++ S  +SL+ L L   +L+      L +L  L  + +   +I       F +L
Sbjct: 140 LVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRL 199

Query: 707 RILQILDISDNNISGSL-PSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYN 765
             L++L+IS      ++ P+C   + +  + ++   L   +      + + L  L+LSYN
Sbjct: 200 YRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYN 258

Query: 766 HLNGNIPDRV-DGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLH 816
            ++  I   +   L +L  + L    L    P     LN L++L++S N L 
Sbjct: 259 PIS-TIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT 309

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  122 bits (309), Expect = 2e-29
 Identities = 72/384 (18%), Positives = 126/384 (32%), Gaps = 75/384 (19%)

Query: 591 LDLSNNQLTGEIPEHLAMGCVSLRSLALSNNN---LEGHMFSRNFNLTNLIWLQLEGNHF 647
           +     +    +PE +       R L L  N    L    F+   +  +L  L+L  N  
Sbjct: 16  VLCHRKRFV-AVPEGIP---TETRLLDLGKNRIKTLNQDEFA---SFPHLEELELNENIV 68

Query: 648 VGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLR 707
               P + +   +L+ L L +N L          L+ L  + + +N I   +   F  L 
Sbjct: 69  SAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLY 128

Query: 708 ILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHL 767
            L+ L++ DN++                          +    F    +L  L L   +L
Sbjct: 129 NLKSLEVGDNDLV------------------------YISHRAFSGLNSLEQLTLEKCNL 164

Query: 768 NGNIPDRV-DGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHI-PSCFDN 825
             +IP      L  L  L L H N+         RL +L++L++S+      + P+C   
Sbjct: 165 T-SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYG 223

Query: 826 TTLHE---RYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLL 882
             L      + N +++                       +                   L
Sbjct: 224 LNLTSLSITHCNLTAVPY--------------------LAVRHLVY-------------L 250

Query: 883 SGLDLSCNRLIGHIPPQI-GNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLS 941
             L+LS N  I  I   +   L ++Q + L    LA   P  F  L  +  L++S N+L+
Sbjct: 251 RFLNLSYNP-ISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT 309

Query: 942 WKIPYQLVELNTLAVFSVAYNNLS 965
                    +  L    +  N L+
Sbjct: 310 TLEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  122 bits (308), Expect = 2e-29
 Identities = 82/354 (23%), Positives = 141/354 (39%), Gaps = 57/354 (16%)

Query: 75  RVVVLDLSQTHRGEYWYLNASLFTPFQQLESLDLRDNDIAGCVENEGLERLSRLSNLKML 134
              +LDL +        LN   F  F  LE L+L +N ++                    
Sbjct: 33  ETRLLDLGKNRIKT---LNQDEFASFPHLEELELNENIVS-------------------- 69

Query: 135 NLVGNLFNNSILSSLARLSSLTSLDLSANRLKGSIDIKGPKRLSRLNNLKVFDLSGNLFN 194
            +    FNN        L +L +L L +NRLK  I        + L+NL   D+S N   
Sbjct: 70  AVEPGAFNN--------LFNLRTLGLRSNRLK-LIP---LGVFTGLSNLTKLDISENKIV 117

Query: 195 NSILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQACSGL 254
             +      L +L+SL + DN L   I  + F  L++LE+L +    + +    +A S L
Sbjct: 118 ILLDYMFQDLYNLKSLEVGDNDLV-YISHRAFSGLNSLEQLTLEKCNLTSIP-TEALSHL 175

Query: 255 RKLSYLHLLRVGIRD-GSKLLQSMGSFPSLNTLDLSYNNFTETVTTTTQGFPHFKSLKEL 313
             L  L L  + I        + +     L  L++S+  + +T+T       +  +L  L
Sbjct: 176 HGLIVLRLRHLNINAIRDYSFKRL---YRLKVLEISHWPYLDTMTP---NCLYGLNLTSL 229

Query: 314 YMDDARIAL--NTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQG-LCPLVHLQELHMA 370
            +    +      +        +  +++L+LS     N   T++   L  L+ LQE+ + 
Sbjct: 230 SITHCNLTAVPYLAV-----RHLVYLRFLNLSY----NPISTIEGSMLHELLRLQEIQLV 280

Query: 371 DNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQ 424
              L    P+    +  LR+L+VS NQ + ++  S    + ++E LIL  N   
Sbjct: 281 GGQLAVVEPYAFRGLNYLRVLNVSGNQ-LTTLEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  122 bits (308), Expect = 2e-29
 Identities = 56/286 (19%), Positives = 108/286 (37%), Gaps = 14/286 (4%)

Query: 537 KQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNN 596
             L  L++++N     +     + L  L    +  N L       F  ++ L  LD+S N
Sbjct: 56  PHLEELELNENIVS-AVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISEN 114

Query: 597 QLTGEIPEHLAMGCVSLRSLALSNNNL---EGHMFSRNFNLTNLIWLQLEGNHFVGEIPQ 653
           ++   + +++     +L+SL + +N+L       FS    L +L  L LE  +      +
Sbjct: 115 KIV-ILLDYMFQDLYNLKSLEVGDNDLVYISHRAFS---GLNSLEQLTLEKCNLTSIPTE 170

Query: 654 SLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILD 713
           +LS    L  L L + +++         L  L+ + +        +         L  L 
Sbjct: 171 ALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLS 230

Query: 714 ISDNNISGSLPS--CYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNI 771
           I+  N++ ++P       V +  ++LS N +   ++       L L  + L    L   +
Sbjct: 231 ITHCNLT-AVPYLAVRHLVYLRFLNLSYNPIS-TIEGSMLHELLRLQEIQLVGGQLA-VV 287

Query: 772 PDRV-DGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLH 816
                 GL+ L  L ++ N L          +  L+ L L +N L 
Sbjct: 288 EPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  120 bits (304), Expect = 7e-29
 Identities = 61/324 (18%), Positives = 120/324 (37%), Gaps = 25/324 (7%)

Query: 129 SNLKMLNLVGNLFNNSILSSLARLSSLTSLDLSANRLKGSIDIKGPKRLSRLNNLKVFDL 188
           +  ++L+L  N          A    L  L+L+ N +  +++   P   + L NL+   L
Sbjct: 32  TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS-AVE---PGAFNNLFNLRTLGL 87

Query: 189 SGNLFNNSILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEVP 248
             N      L     LS+L  L + +N++   +    F  L NL+ L++  N++      
Sbjct: 88  RSNRLKLIPLGVFTGLSNLTKLDISENKIV-ILLDYMFQDLYNLKSLEVGDNDLVYIS-H 145

Query: 249 QACSGLRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTETVTTTTQGFPHFK 308
           +A SGL  L  L L +  +       +++     L  L L + N           F    
Sbjct: 146 RAFSGLNSLEQLTLEKCNLTSIPT--EALSHLHGLIVLRLRHLNINA---IRDYSFKRLY 200

Query: 309 SLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLC-PLVHLQEL 367
            LK L +           +        ++  LS+++     N   +       LV+L+ L
Sbjct: 201 RLKVLEISHWPY---LDTMTPNCLYGLNLTSLSITH----CNLTAVPYLAVRHLVYLRFL 253

Query: 368 HMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPI 427
           +++ N +       L  +  L+ + +   Q +  +       L  +  L +S N      
Sbjct: 254 NLSYNPISTIEGSMLHELLRLQEIQLVGGQ-LAVVEPYAFRGLNYLRVLNVSGNQLT--- 309

Query: 428 SLEP-LFNH-SRLKIFDAENNEIN 449
           +LE  +F+    L+    ++N + 
Sbjct: 310 TLEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  106 bits (267), Expect = 3e-24
 Identities = 60/329 (18%), Positives = 106/329 (32%), Gaps = 68/329 (20%)

Query: 650 EIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRIL 709
            +P+ +   +  + L L  N +         +   L  + + +N +    P  F  L  L
Sbjct: 25  AVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNL 82

Query: 710 QILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNG 769
           + L +  N +                          +  G F     L  LD+S N +  
Sbjct: 83  RTLGLRSNRLK------------------------LIPLGVFTGLSNLTKLDISENKIV- 117

Query: 770 NIPDRV-DGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPS-CFDN-- 825
            + D +   L  L  L +  N+L          LN L+ L L   NL   IP+    +  
Sbjct: 118 ILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT-SIPTEALSHLH 176

Query: 826 --TTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLS 883
               L  R+ N ++++                      SF    +             L 
Sbjct: 177 GLIVLRLRHLNINAIRD--------------------YSFKRLYR-------------LK 203

Query: 884 GLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWK 943
            L++S    +  + P       + +L+++H NL         +L  +  L+LSYN +S  
Sbjct: 204 VLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTI 263

Query: 944 IPYQLVELNTLAVFSVAYNNLSGKIPERA 972
               L EL  L    +    L+  +   A
Sbjct: 264 EGSMLHELLRLQEIQLVGGQLA-VVEPYA 291

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  102 bits (255), Expect = 1e-22
 Identities = 73/395 (18%), Positives = 137/395 (34%), Gaps = 95/395 (24%)

Query: 205 SSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLR 264
           +  R L L  NR++ +++  EF S  +LEEL+++ N +   E P A + L          
Sbjct: 32  TETRLLDLGKNRIK-TLNQDEFASFPHLEELELNENIVSAVE-PGAFNNL---------- 79

Query: 265 VGIRDGSKLLQSMGSFPSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDARIALNT 324
                            +L TL L  N            F    +L +L + + +I    
Sbjct: 80  ----------------FNLRTLGLRSNRLKLI---PLGVFTGLSNLTKLDISENKI---V 117

Query: 325 SFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQG-LCPLVHLQELHMADNDLRGSLPWCLA 383
             L  + + + +++ L + +    N+   +       L  L++L +   +L       L+
Sbjct: 118 ILLDYMFQDLYNLKSLEVGD----NDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALS 173

Query: 384 NMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDA 443
           ++  L +L +     I +I       L  ++ L +S   +   ++         L     
Sbjct: 174 HLHGLIVLRLRHLN-INAIRDYSFKRLYRLKVLEISHWPYLDTMT-PNCLYGLNLTSLSI 231

Query: 444 ENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEE 503
            +  + A  +   ++      L+ L LS             YN        +S I     
Sbjct: 232 THCNLTA--VPYLAVR-HLVYLRFLNLS-------------YNP-------ISTI----- 263

Query: 504 FPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSR 563
               +L    +L+++ LV                  +L  V    F+G         L+ 
Sbjct: 264 -EGSMLHELLRLQEIQLVGG----------------QLAVVEPYAFRG---------LNY 297

Query: 564 LTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQL 598
           L V N+S N L     S F ++  L+ L L +N L
Sbjct: 298 LRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPL 332

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  125 bits (316), Expect = 5e-30
 Identities = 91/584 (15%), Positives = 177/584 (30%), Gaps = 60/584 (10%)

Query: 92  LNASLFTPFQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILSSLAR 151
           L A+L   F+Q+E L+L D  I            +    ++ L +  N            
Sbjct: 66  LPAALLDSFRQVELLNLNDLQIEEIDTYA----FAYAHTIQKLYMGFNAIRYLPPHVFQN 121

Query: 152 LSSLTSLDLSANRLKGSIDIKGPKRLSRLNNLKVFDLSGNLFNNSILSSLARLSSLRSLL 211
           +  LT L L  N L  S+             L    +S N        +    +SL++L 
Sbjct: 122 VPLLTVLVLERNDLS-SLP---RGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQ 177

Query: 212 LYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGIRDGS 271
           L  NRL   +D      + +L   ++SYN +         +    +  L      I    
Sbjct: 178 LSSNRLT-HVD---LSLIPSLFHANVSYNLLSTL------AIPIAVEELDASHNSINVVR 227

Query: 272 KLLQSMGSFPSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDARIALNTSFLQIIG 331
                      L  L L +NN T+     T    ++  L E+ +    +      +    
Sbjct: 228 G-----PVNVELTILKLQHNNLTD-----TAWLLNYPGLVEVDLSYNEL---EKIMYHPF 274

Query: 332 ESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRIL 391
             M  ++ L +SN    N    L+    P+  L+ L ++ N L   +         L  L
Sbjct: 275 VKMQRLERLYISN----NRLVALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENL 329

Query: 392 DVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAE 451
            +  N     I +  L    ++++L LS N +          N +R  + DA+ +     
Sbjct: 330 YLDHNS----IVTLKLSTHHTLKNLTLSHNDWDCNSLRALFRNVARPAVDDADQHCKIDY 385

Query: 452 IIE------SHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFP 505
            +E             +  LQ + L+S                 +  V+     + ++  
Sbjct: 386 QLEHGLCCKESDKPYLDRLLQYIALTSVVEKVQRAQGRCSATDTINSVQSLSHYITQQGG 445

Query: 506 NWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLT 565
             L  N     +++ +   +       I   + L+ L    +              + L 
Sbjct: 446 VPLQGNEQLEAEVNELRAEVQQLTNEQIQQEQLLQGLHAEID--------------TNLR 491

Query: 566 VFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEG 625
            + +  + L  S  +       L+       + T                L   N  LE 
Sbjct: 492 RYRLPKDGLARSSDNLNKVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEK 551

Query: 626 HMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNN 669
            + ++      L          V ++    ++    + +   ++
Sbjct: 552 QLDNKRAKQAELRQETSLKRQKVKQLEAKKNRNPDTRRVSHHHH 595

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  120 bits (302), Expect = 3e-28
 Identities = 79/382 (20%), Positives = 130/382 (34%), Gaps = 62/382 (16%)

Query: 568 NISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNN---NLE 624
           +I M   D         +N  + +   N+ +  ++P  L      +  L L++     ++
Sbjct: 33  HIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEID 91

Query: 625 GHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTV 684
            + F+       +  L +  N      P        L  L L  N LS        N   
Sbjct: 92  TYAFA---YAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPK 148

Query: 685 LRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHG 744
           L  + M  N++E      F     LQ L +S N ++  +        +   ++S N+L  
Sbjct: 149 LTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVDL-SLIPSLFHANVSYNLLS- 205

Query: 745 QLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQ 804
                T    + +  LD S+N +N  +   V    +L+ L L HNNL  +    L     
Sbjct: 206 -----TLAIPIAVEELDASHNSIN-VVRGPV--NVELTILKLQHNNLT-DTA-WLLNYPG 255

Query: 805 LQLLDLSNNNLHGHIPSCFDN----TTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQIL 860
           L  +DLS N L   +   F        L+   N                          L
Sbjct: 256 LVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR-------------------------L 290

Query: 861 ESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPI 920
            + +   + I           L  LDLS N L+ H+        +++ L L HN++    
Sbjct: 291 VALNLYGQPIPT---------LKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK 340

Query: 921 PSTFSNLRNIESLDLSYNKLSW 942
            ST   L+N   L LS+N    
Sbjct: 341 LSTHHTLKN---LTLSHNDWDC 359

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  108 bits (272), Expect = 1e-24
 Identities = 70/572 (12%), Positives = 171/572 (29%), Gaps = 62/572 (10%)

Query: 125 LSRLSNLKMLNLVGNLFNNSILSSLARLSSLTSLDLSANRLKGSIDIKGPKRLSRLNNLK 184
           L        +++     +         L++   +    + ++  +       L     ++
Sbjct: 23  LQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLP---AALLDSFRQVE 78

Query: 185 VFDLSGNLFNNSILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDN 244
           + +L+          + A   +++ L +  N +   +    F ++  L  L +  N++ +
Sbjct: 79  LLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLSS 137

Query: 245 FEVPQACSGLRKLSYLHLLRVGIRD-GSKLLQSMGSFPSLNTLDLSYNNFTETVTTTTQG 303
                      KL+ L +    +        Q+     SL  L LS N        T   
Sbjct: 138 LP-RGIFHNTPKLTTLSMSNNNLERIEDDTFQAT---TSLQNLQLSSNRL------THVD 187

Query: 304 FPHFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVH 363
                SL    +    +   ++          +++ L  S+    N+   +   +     
Sbjct: 188 LSLIPSLFHANVSYNLL---STL-----AIPIAVEELDASH----NSINVVRGPVNV--E 233

Query: 364 LQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHF 423
           L  L +  N+L     W L N   L  +D+S N+ +  I   P + +  +E L +S+N  
Sbjct: 234 LTILKLQHNNLT-DTAW-LLNYPGLVEVDLSYNE-LEKIMYHPFVKMQRLERLYISNNRL 290

Query: 424 Q-IPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPK 482
             + +  +P+     LK+ D  +N +               +L++L L       +    
Sbjct: 291 VALNLYGQPI---PTLKVLDLSHNHLLHVERNQPQFD----RLENLYLDHNSIVTLKLST 343

Query: 483 FLYNQH-DLEYVRLSHIKMNEEFPNW----LLENNTKLRQLSLVNDSLVGPFRLPIHSHK 537
               ++  L +       +   F N     + + +   +    +   L        +  +
Sbjct: 344 HHTLKNLTLSHNDWDCNSLRALFRNVARPAVDDADQHCKIDYQLEHGLCCKESDKPYLDR 403

Query: 538 QLRLLDVSK--------------NNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFG 583
            L+ + ++                +    +      I  +  V       L+  +     
Sbjct: 404 LLQYIALTSVVEKVQRAQGRCSATDTINSVQSLSHYITQQGGVPLQGNEQLEAEVNELRA 463

Query: 584 NMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLE 643
            +  L    +   QL   +   +       R           ++     +L      +L 
Sbjct: 464 EVQQLTNEQIQQEQLLQGLHAEIDTNLRRYRLPKDGLARSSDNLNKVFTHLKERQAFKLR 523

Query: 644 GNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKI 675
                    ++ +K    + L   N +L  ++
Sbjct: 524 ETQA--RRTEADAKQKETEDLEQENIALEKQL 553

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  108 bits (270), Expect = 3e-24
 Identities = 64/392 (16%), Positives = 121/392 (30%), Gaps = 78/392 (19%)

Query: 593 LSNNQLTGEIPEHLAMGCV--------SLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEG 644
           +   Q     P      C+            + +     + +    +  L N   +  + 
Sbjct: 1   VGGQQRYNVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKN 60

Query: 645 NHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFC 704
           +         L     ++ L L++  +             ++ + M  N I    P  F 
Sbjct: 61  STMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQ 120

Query: 705 QLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSY 764
            + +L +L +  N++S                         L  G F N   L  L +S 
Sbjct: 121 NVPLLTVLVLERNDLS------------------------SLPRGIFHNTPKLTTLSMSN 156

Query: 765 NHLNGNIPDRV-DGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCF 823
           N+L   I D      + L  L L+ N L     + L  +  L   ++S N L   +    
Sbjct: 157 NNLE-RIEDDTFQATTSLQNLQLSSNRLTH---VDLSLIPSLFHANVSYNLLS-TLAIPI 211

Query: 824 DNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLS 883
               L   +N+ + ++                                      V   L+
Sbjct: 212 AVEELDASHNSINVVRG------------------------------------PVNVELT 235

Query: 884 GLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWK 943
            L L  N L       + N   +  ++LS+N L   +   F  ++ +E L +S N+L   
Sbjct: 236 ILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-A 292

Query: 944 IPYQLVELNTLAVFSVAYNNLSGKIPERAAQF 975
           +      + TL V  +++N+L   +     QF
Sbjct: 293 LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQF 323

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  104 bits (260), Expect = 5e-23
 Identities = 87/549 (15%), Positives = 184/549 (33%), Gaps = 56/549 (10%)

Query: 288 LSYNNFTET--VTTTTQGFPHFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNS 345
             YN                +     ++++D     +   F  I   ++ + + ++  N 
Sbjct: 5   QRYNVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDI---TLNNQKIVTFKN- 60

Query: 346 SVSNNSRTLDQG-LCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISS 404
              +  R L    L     ++ L++ D  +     +  A   +++ L +  N  I  +  
Sbjct: 61  ---STMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPP 116

Query: 405 SPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQ 464
               ++  +  L+L  N     +      N  +L      NN +  E IE  +       
Sbjct: 117 HVFQNVPLLTVLVLERNDLSS-LPRGIFHNTPKLTTLSMSNNNL--ERIEDDTFQ-ATTS 172

Query: 465 LQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDS 524
           LQ+L LSS     +           L +  +S+  ++       L     + +L   ++S
Sbjct: 173 LQNLQLSSNRLTHVDLSLI----PSLFHANVSYNLLST------LAIPIAVEELDASHNS 222

Query: 525 LVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGN 584
           +     +    + +L +L +  NN        +      L   ++S N L+  +   F  
Sbjct: 223 IN---VVRGPVNVELTILKLQHNNLT-DTAWLLN--YPGLVEVDLSYNELEKIMYHPFVK 276

Query: 585 MNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEG 644
           M  L+ L +SNN+L   +  +      +L+ L LS+N+L  H+         L  L L+ 
Sbjct: 277 MQRLERLYISNNRLV-ALNLYGQ-PIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDH 333

Query: 645 NHFVGEIPQSLSKCSSLQGLFLSNNSLSG----KIPRWLGNLTVL---RHIIMPKN---- 693
           N  V  +   LS   +L+ L LS+N         + R +    V    +H  +       
Sbjct: 334 NSIV-TLK--LSTHHTLKNLTLSHNDWDCNSLRALFRNVARPAVDDADQHCKIDYQLEHG 390

Query: 694 --HIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTF 751
               E   P     L+ + +  + +                + ++  +++ H  + +   
Sbjct: 391 LCCKESDKPYLDRLLQYIALTSVVEKVQRAQGRC----SATDTINSVQSLSH-YITQQGG 445

Query: 752 FNCLTLMILDLSYNHLNGNIPD-RVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDL 810
                   L+   N L   +     + + Q   L   H  ++  +       + L     
Sbjct: 446 VPLQGNEQLEAEVNELRAEVQQLTNEQIQQEQLLQGLHAEIDTNLRRYRLPKDGLARSSD 505

Query: 811 SNNNLHGHI 819
           + N +  H+
Sbjct: 506 NLNKVFTHL 514

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  101 bits (254), Expect = 2e-22
 Identities = 96/551 (17%), Positives = 183/551 (33%), Gaps = 79/551 (14%)

Query: 91  YLNASLFTPFQQLESLDLRDNDIAGCVENEGLER--LSRLSNLKMLNLVGNLFNNSILSS 148
           YL   +F     L  L L  ND+        L R        L  L++  N        +
Sbjct: 113 YLPPHVFQNVPLLTVLVLERNDL------SSLPRGIFHNTPKLTTLSMSNNNLERIEDDT 166

Query: 149 LARLSSLTSLDLSANRLKGSIDIKGPKRLSRLNNLKVFDLSGNLFNNSILSSLARLSSLR 208
               +SL +L LS+NRL   +D+     L   N      +S NL     LS+LA   ++ 
Sbjct: 167 FQATTSLQNLQLSSNRLT-HVDLSLIPSLFHAN------VSYNL-----LSTLAIPIAVE 214

Query: 209 SLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGIR 268
            L    N     I+V        L  L + +N + +                        
Sbjct: 215 ELDASHNS----INVVRGPVNVELTILKLQHNNLTD------------------------ 246

Query: 269 DGSKLLQSMGSFPSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDARIALNTSFLQ 328
                   + ++P L  +DLSYN   + +      F   + L+ LY+ + R+      L 
Sbjct: 247 -----TAWLLNYPGLVEVDLSYNELEKIMYHP---FVKMQRLERLYISNNRL----VALN 294

Query: 329 IIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSL 388
           + G+ +P+++ L LS+    N+   +++       L+ L++  N +  +L   L+   +L
Sbjct: 295 LYGQPIPTLKVLDLSH----NHLLHVERNQPQFDRLENLYLDHNSIV-TLK--LSTHHTL 347

Query: 389 RILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEI 448
           + L +S N    +   +   ++     +  +D H +I   LE              +   
Sbjct: 348 KNLTLSHNDWDCNSLRALFRNVARP-AVDDADQHCKIDYQLEHGLCCKES------DKPY 400

Query: 449 NAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQ-HDLEYVRLSHIKMNEEFPNW 507
              +++  +LT+   ++Q         D I   + L +       V L   +  E   N 
Sbjct: 401 LDRLLQYIALTSVVEKVQRAQGRCSATDTINSVQSLSHYITQQGGVPLQGNEQLEAEVNE 460

Query: 508 LLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVF 567
           L     +L    +  + L+    L       LR   + K+         +  + + L   
Sbjct: 461 LRAEVQQLTNEQIQQEQLLQ--GLHAEIDTNLRRYRLPKDGL-ARSSDNLNKVFTHLKER 517

Query: 568 NISMNALD-GSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGH 626
                         +       + L+  N  L  ++    A      +  +L    ++  
Sbjct: 518 QAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQL 577

Query: 627 MFSRNFNLTNL 637
              +N N    
Sbjct: 578 EAKKNRNPDTR 588

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  120 bits (303), Expect = 8e-29
 Identities = 89/454 (19%), Positives = 163/454 (35%), Gaps = 87/454 (19%)

Query: 535 SHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGN---------- 584
           S+  L+      +N    +P+E  + +   T +  + +  + + P   G           
Sbjct: 9   SNTFLQEPLRHSSNLT-EMPVEAEN-VKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLR 66

Query: 585 ---MNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQ 641
                    L+L+N  L+  +PE        L SL  S N+L   +     +L +L+   
Sbjct: 67  DCLDRQAHELELNNLGLS-SLPELPP----HLESLVASCNSLT-ELPELPQSLKSLLVDN 120

Query: 642 LEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPL 701
                     P        L+ L +SNN L  K+P  L N + L+ I +  N ++  +P 
Sbjct: 121 NNLKALSDLPP-------LLEYLGVSNNQLE-KLPE-LQNSSFLKIIDVDNNSLKK-LPD 170

Query: 702 EFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLT-LMIL 760
               L   + +   +N +   LP   +   +  ++   N L          +    L  +
Sbjct: 171 LPPSL---EFIAAGNNQLE-ELPELQNLPFLTAIYADNNSLK------KLPDLPLSLESI 220

Query: 761 DLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIP 820
               N L   +P+ +  L  L+ +   +N L+  +P        L+ L++ +N L   +P
Sbjct: 221 VAGNNILE-ELPE-LQNLPFLTTIYADNNLLK-TLPDLPP---SLEALNVRDNYLT-DLP 273

Query: 821 SCFDN-TTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVP 879
               + T L    N  S L     +               L   + ++  I       + 
Sbjct: 274 ELPQSLTFLDVSENIFSGLSELPPN---------------LYYLNASSNEIR-----SLC 313

Query: 880 SLLSG---LDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLS 936
            L      L++S N+LI  +P     L +   L  S N+LA  +P    NL+    L + 
Sbjct: 314 DLPPSLEELNVSNNKLI-ELPALPPRLER---LIASFNHLAE-VPELPQNLK---QLHVE 365

Query: 937 YNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPE 970
           YN L  + P     +  L +     N+   ++PE
Sbjct: 366 YNPLR-EFPDIPESVEDLRM-----NSHLAEVPE 393

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  119 bits (300), Expect = 2e-28
 Identities = 89/446 (19%), Positives = 143/446 (32%), Gaps = 78/446 (17%)

Query: 512 NTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISM 571
           + +  +L L N  L     LP      L  L  S N+    +P      L  L V N ++
Sbjct: 70  DRQAHELELNNLGLS---SLP-ELPPHLESLVASCNSLT-ELPELPQS-LKSLLVDNNNL 123

Query: 572 NALDGSIPS---------------SFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSL 616
            AL    P                   N +FL+ +D+ NN L  ++P+       SL  +
Sbjct: 124 KALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLK-KLPDLPP----SLEFI 178

Query: 617 ALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIP 676
           A  NN LE        NL  L  +  + N    ++P       SL+ +   NN L     
Sbjct: 179 AAGNNQLEE--LPELQNLPFLTAIYADNNSLK-KLPDLPL---SLESIVAGNNILE--EL 230

Query: 677 RWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVH 736
             L NL  L  I    N ++  +P     L  L + D    ++     S      ++   
Sbjct: 231 PELQNLPFLTTIYADNNLLKT-LPDLPPSLEALNVRDNYLTDLPELPQSLTF---LDVSE 286

Query: 737 LSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVP 796
              + L              L  L+ S N +  ++ D       L  L +++N L  E+P
Sbjct: 287 NIFSGLSELPPN--------LYYLNASSNEIR-SLCDL---PPSLEELNVSNNKLI-ELP 333

Query: 797 IQLCRLNQLQLLDLSNNNLHGHIPSCFDN-TTLHERYNNGSSLQPFETSFVIMGGMDVDP 855
                  +L+ L  S N+L   +P    N   LH  YN                      
Sbjct: 334 ALPP---RLERLIASFNHLA-EVPELPQNLKQLHVEYNPLREFPD--------------- 374

Query: 856 KKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNN 915
              I ES +    +        +P  L  L +  N L    P    ++     L ++   
Sbjct: 375 ---IPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLR-EFPDIPESVED---LRMNSER 427

Query: 916 LAGPIPSTFSNLRNIESLDLSYNKLS 941
           +  P          +E     ++   
Sbjct: 428 VVDPYEFAHETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  118 bits (299), Expect = 2e-28
 Identities = 92/477 (19%), Positives = 161/477 (33%), Gaps = 97/477 (20%)

Query: 511 NNTKLRQLSLVNDSLVGPFRLP--IHSHKQLRLLDVSKNNFQGHIPLEIGDILS------ 562
           +NT L++    + +L     +P    + K       + + ++ + P   G+         
Sbjct: 9   SNTFLQEPLRHSSNLT---EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRL 65

Query: 563 ------RLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSL 616
                 +     ++   L  S+P    +   L+ L  S N LT E+PE       SL   
Sbjct: 66  RDCLDRQAHELELNNLGLS-SLPELPPH---LESLVASCNSLT-ELPELPQ-SLKSLLVD 119

Query: 617 ALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIP 676
             +   L             L +L +  N    ++P  L   S L+ + + NNSL  K+P
Sbjct: 120 NNNLKALSD-------LPPLLEYLGVSNNQLE-KLP-ELQNSSFLKIIDVDNNSLK-KLP 169

Query: 677 RWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVH 736
               +L  +       N +E  +P E   L  L  +   +N++   LP     + +E + 
Sbjct: 170 DLPPSLEFIA---AGNNQLEE-LP-ELQNLPFLTAIYADNNSLK-KLPDL--PLSLESIV 221

Query: 737 LSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVP 796
              N+L  +L E    N   L  +    N L   +PD       L  L +  N L  ++P
Sbjct: 222 AGNNILE-ELPE--LQNLPFLTTIYADNNLLK-TLPD---LPPSLEALNVRDNYLT-DLP 273

Query: 797 IQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPK 856
                L  L + +   + L    P+      L+   N   SL     S            
Sbjct: 274 ELPQSLTFLDVSENIFSGLSELPPNL---YYLNASSNEIRSLCDLPPS------------ 318

Query: 857 KQILESFDFTTKSITYTYQGRVPSLLSGL---DLSCNRLIGHIPPQIGNLTKIQTLNLSH 913
              LE  + +   +       +P+L   L     S N L   +P    NL +   L++ +
Sbjct: 319 ---LEELNVSNNKLI-----ELPALPPRLERLIASFNHL-AEVPELPQNLKQ---LHVEY 366

Query: 914 NNLAGPIPSTFSNLR----------------NIESLDLSYNKLSWKIPYQLVELNTL 954
           N L    P    ++                 N++ L +  N L  + P     +  L
Sbjct: 367 NPLRE-FPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLR-EFPDIPESVEDL 421

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  117 bits (295), Expect = 6e-28
 Identities = 102/598 (17%), Positives = 180/598 (30%), Gaps = 156/598 (26%)

Query: 129 SNLKMLNLVGNLFNNSILSSL----ARLSSLTSLDLSANRLKGSIDIKGPKRLSRLNNLK 184
            N+    L   L ++S L+ +      + S T    + +  + +     P        + 
Sbjct: 6   RNVSNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNA----PPGNGEQREMA 61

Query: 185 VFDLSGNLFNNSILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDN 244
           V  L   L                 L L +  L  S+     +   +LE L  S N +  
Sbjct: 62  VSRLRDCLDRQ-----------AHELELNNLGLS-SLP----ELPPHLESLVASCNSLT- 104

Query: 245 FEVPQACSGLRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTETVTTTTQGF 304
            E+P+    L+ L   +     + D           P L  L +S N   +         
Sbjct: 105 -ELPELPQSLKSLLVDNNNLKALSD---------LPPLLEYLGVSNNQLEK--------L 146

Query: 305 PHFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHL 364
           P  ++   L                        + + + N    N+ + L         L
Sbjct: 147 PELQNSSFL------------------------KIIDVDN----NSLKKLPDLPP---SL 175

Query: 365 QELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQ 424
           + +   +N L   LP  L N+  L  +   +N L             S+E ++  +N  +
Sbjct: 176 EFIAAGNNQLE-ELP-ELQNLPFLTAIYADNNSLKKLPDL-----PLSLESIVAGNNILE 228

Query: 425 IPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFL 484
               L+ L     L    A+NN +                              T P   
Sbjct: 229 ELPELQNLPF---LTTIYADNNLLK-----------------------------TLPDLP 256

Query: 485 YNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDV 544
            +   LE + +    + +     L E    L  L +  +   G   LP      L  L+ 
Sbjct: 257 PS---LEALNVRDNYLTD-----LPELPQSLTFLDVSENIFSGLSELP----PNLYYLNA 304

Query: 545 SKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPE 604
           S N  +      + D+   L   N+S N L   +P+       L+ L  S N L  E+PE
Sbjct: 305 SSNEIR-----SLCDLPPSLEELNVSNNKLI-ELPALPPR---LERLIASFNHLA-EVPE 354

Query: 605 HLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWL--QLEGNHFVGEIPQSLSKCSSLQ 662
                  +L+ L +  N L            ++      L  N  + E+P+      +L+
Sbjct: 355 LPQ----NLKQLHVEYNPLR--------EFPDIPESVEDLRMNSHLAEVPEL---PQNLK 399

Query: 663 GLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNIS 720
            L +  N L  + P    ++  LR   M    +  P          L+      ++  
Sbjct: 400 QLHVETNPLR-EFPDIPESVEDLR---MNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  111 bits (280), Expect = 5e-26
 Identities = 98/546 (17%), Positives = 172/546 (31%), Gaps = 116/546 (21%)

Query: 271 SKLLQSMGSFPSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDARIALNTSFLQII 330
           +++     +  S      +++ +                  E            +  ++ 
Sbjct: 24  TEMPVEAENVKSKTEYYNAWSEWERNAP---------PGNGEQ--------REMAVSRLR 66

Query: 331 GESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRI 390
                    L L+N        +L +      HL+ L  + N L   LP    ++ SL +
Sbjct: 67  DCLDRQAHELELNN----LGLSSLPELPP---HLESLVASCNSLT-ELPELPQSLKSLLV 118

Query: 391 LDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEINA 450
            + +   L              +E L +S+N  +    L  L N S LKI D +NN +  
Sbjct: 119 DNNNLKALSDLPPL--------LEYLGVSNNQLE---KLPELQNSSFLKIIDVDNNSLK- 166

Query: 451 EIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLE 510
                                         P    +   LE++   + ++ EE P   L+
Sbjct: 167 ----------------------------KLPDLPPS---LEFIAAGNNQL-EELPE--LQ 192

Query: 511 NNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNIS 570
           N   L  +   N+SL     LP      L  +    N        E+ + L  LT     
Sbjct: 193 NLPFLTAIYADNNSLKKLPDLP----LSLESIVAGNNIL--EELPELQN-LPFLTTIYAD 245

Query: 571 MNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSR 630
            N L  ++P    +   L+ L++ +N LT ++PE       SL  L +S N         
Sbjct: 246 NNLL-KTLPDLPPS---LEALNVRDNYLT-DLPELPQ----SLTFLDVSENIFS----GL 292

Query: 631 NFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIM 690
           +    NL +L    N     +        SL+ L +SNN L  ++P     L  L   I 
Sbjct: 293 SELPPNLYYLNASSNEIR-SLCDLPP---SLEELNVSNNKLI-ELPALPPRLERL---IA 344

Query: 691 PKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGT 750
             NH+   +P     L+ L    +  N +    P            +    ++  L E  
Sbjct: 345 SFNHLAE-VPELPQNLKQL---HVEYNPLR-EFPD-------IPESVEDLRMNSHLAEVP 392

Query: 751 FFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDL 810
                 L  L +  N L    PD       +  L +    +           ++L+    
Sbjct: 393 EL-PQNLKQLHVETNPLR-EFPD---IPESVEDLRMNSERVVDPYEFAHETTDKLEDDVF 447

Query: 811 SNNNLH 816
            +++ H
Sbjct: 448 EHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 98.9 bits (247), Expect = 8e-22
 Identities = 74/506 (14%), Positives = 158/506 (31%), Gaps = 91/506 (17%)

Query: 100 FQQLESLDLRDNDIAGCVENEGLE----RLSRLSNLKMLNLVG-NLFNNSILSSLARLSS 154
            +         ++          E     +SRL +          L N  + S       
Sbjct: 33  VKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPELPPH 92

Query: 155 LTSLDLSANRLKGSIDIKGPKRLSRLNNLKVFDLSGNLFNNSILSSLARLSSLRSLLLYD 214
           L SL  S N L   +    P+    L +L V + +    ++           L  L + +
Sbjct: 93  LESLVASCNSLT-EL----PELPQSLKSLLVDNNNLKALSDLP-------PLLEYLGVSN 140

Query: 215 NRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGIRDGSKLL 274
           N+LE    + E  + S L+ +D+  N +   ++P        L ++      + +    L
Sbjct: 141 NQLE---KLPELQNSSFLKIIDVDNNSLK--KLP---DLPPSLEFIAAGNNQLEE----L 188

Query: 275 QSMGSFPSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDARIALNTSFLQIIGESM 334
             + + P L  +    N+  +             SL+ +   +  +           +++
Sbjct: 189 PELQNLPFLTAIYADNNSLKKL-------PDLPLSLESIVAGNNILEELPEL-----QNL 236

Query: 335 PSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVS 394
           P +  +   N    N  +TL         L+ L++ DN L   LP    ++T L + +  
Sbjct: 237 PFLTTIYADN----NLLKTLPDLPP---SLEALNVRDNYLT-DLPELPQSLTFLDVSENI 288

Query: 395 SNQLIGSISSSPLIHLTSIEDLILSDNHF-QIPISLEPLFNHSRLKIFDAENNEINAEII 453
            + L             ++  L  S N    +            L+  +  NN++     
Sbjct: 289 FSGLSELP--------PNLYYLNASSNEIRSLCDLP------PSLEELNVSNNKLI---- 330

Query: 454 ESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNT 513
               L     +L+ L+ S  +      P+   N   L+ + + +  +  EFP+       
Sbjct: 331 ---ELPALPPRLERLIAS--FNHLAEVPELPQN---LKQLHVEYNPL-REFPDIP----E 377

Query: 514 KLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNA 573
            +  L + +     P        + L+ L V  N  +   P         +    ++   
Sbjct: 378 SVEDLRMNSHLAEVPELP-----QNLKQLHVETNPLR-EFPDIPE----SVEDLRMNSER 427

Query: 574 LDGSIPSSFGNMNFLQFLDLSNNQLT 599
           +      +    + L+     ++   
Sbjct: 428 VVDPYEFAHETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 93.1 bits (232), Expect = 7e-20
 Identities = 67/345 (19%), Positives = 124/345 (35%), Gaps = 56/345 (16%)

Query: 630 RNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHII 689
           RN + T L       ++   E+P       S    + + +      P   G    +    
Sbjct: 6   RNVSNTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSR 64

Query: 690 MPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEG 749
           +             C  R    L++++  +S SLP       +E +  S N L  +L E 
Sbjct: 65  LRD-----------CLDRQAHELELNNLGLS-SLPE--LPPHLESLVASCNSLT-ELPEL 109

Query: 750 TFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLD 809
              +  +L++ + +   L+   P        L YL +++N LE ++P +L   + L+++D
Sbjct: 110 -PQSLKSLLVDNNNLKALSDLPP-------LLEYLGVSNNQLE-KLP-ELQNSSFLKIID 159

Query: 810 LSNNNLHGHIPSCFDN-TTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTK 868
           + NN+L   +P    +   +    N    L                     L +      
Sbjct: 160 VDNNSLK-KLPDLPPSLEFIAAGNNQLEELPEL-------------QNLPFLTAIYADNN 205

Query: 869 SITYTYQGRVPSLLSGL---DLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFS 925
           S+      ++P L   L       N L     P++ NL  + T+   +N L   +P    
Sbjct: 206 SLK-----KLPDLPLSLESIVAGNNIL--EELPELQNLPFLTTIYADNNLLKT-LPDLPP 257

Query: 926 NLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPE 970
           +L   E+L++  N L+  +P     L  L V    ++ LS   P 
Sbjct: 258 SL---EALNVRDNYLT-DLPELPQSLTFLDVSENIFSGLSELPPN 298

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 90.4 bits (225), Expect = 5e-19
 Identities = 90/455 (19%), Positives = 155/455 (34%), Gaps = 94/455 (20%)

Query: 101 QQLESLDLRDNDIAGCVENEGLERLSR-LSNLKMLNLVGNLFNNSILSSLARLSSLTSLD 159
             LESL    N          L  L     +LK L +  N      LS L     L  L 
Sbjct: 91  PHLESLVASCNS---------LTELPELPQSLKSLLVDNNNLKA--LSDL--PPLLEYLG 137

Query: 160 LSANRLKGSIDIKGPKRLSRLNNLKVFDLSGNLFNNSILSSL-ARLSSLRSLLLYDNRLE 218
           +S N+L+   ++         + LK+ D+  N      L  L     SL  +   +N+LE
Sbjct: 138 VSNNQLEKLPEL------QNSSFLKIIDVDNNS-----LKKLPDLPPSLEFIAAGNNQLE 186

Query: 219 GSIDVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGIRDGSKLLQSMG 278
              ++ E  +L  L  +    N +              L  +      + +    L  + 
Sbjct: 187 ---ELPELQNLPFLTAIYADNNSLKKLP-----DLPLSLESIVAGNNILEE----LPELQ 234

Query: 279 SFPSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDARIALNTSFLQIIGESMPSIQ 338
           + P L T+    N                 SL+ L + D         L  + E   S+ 
Sbjct: 235 NLPFLTTIYADNNLLKTL-------PDLPPSLEALNVRDNY-------LTDLPELPQSLT 280

Query: 339 YLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQL 398
           +L +S     N    L +      +L  L+ + N++R SL        SL  L+VS+N+L
Sbjct: 281 FLDVSE----NIFSGLSELPP---NLYYLNASSNEIR-SLC---DLPPSLEELNVSNNKL 329

Query: 399 IGSISSSPLIHLTSIEDLILSDNHFQ-IPISLEPLFNHSRLKIFDAENNEINAEIIESHS 457
           I  + +        +E LI S NH   +P           LK    E N +         
Sbjct: 330 I-ELPAL----PPRLERLIASFNHLAEVPELP------QNLKQLHVEYNPLR-------E 371

Query: 458 LTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQ 517
                  ++ L ++S        P+   N   L+ + +    +  EFP+        +  
Sbjct: 372 FPDIPESVEDLRMNSHL---AEVPELPQN---LKQLHVETNPL-REFPDIP----ESVED 420

Query: 518 LSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGH 552
           L + ++ +V P+     +  +L    V +++   H
Sbjct: 421 LRMNSERVVDPYEFAHETTDKLEDD-VFEHHHHHH 454

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 86.2 bits (214), Expect = 1e-17
 Identities = 70/355 (19%), Positives = 106/355 (29%), Gaps = 68/355 (19%)

Query: 95  SLFTPFQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILSSLARLSS 154
            L      LE +   +N +      E L  L  L  L  +       NNS+        S
Sbjct: 167 KLPDLPPSLEFIAAGNNQL------EELPELQNLPFLTAIYA----DNNSLKKLPDLPLS 216

Query: 155 LTSLDLSANRLKGSIDIKGPKRLSRLNNLKVFDLSGNLFNNSILSSLARLSSLRSLLLYD 214
           L S+    N L      +    L  L  L          NN + +      SL +L + D
Sbjct: 217 LESIVAGNNIL------EELPELQNLPFLTTIYAD----NNLLKTLPDLPPSLEALNVRD 266

Query: 215 NRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGIRDGSKLL 274
           N L         +   +L  LD+S N                L YL+     IR    L 
Sbjct: 267 NYLTDLP-----ELPQSLTFLDVSENIFSGLS-----ELPPNLYYLNASSNEIRSLCDLP 316

Query: 275 QSMGSFPSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDARIALNTSFLQIIGESM 334
                 PSL  L++S N   E              L+ L             L  + E  
Sbjct: 317 ------PSLEELNVSNNKLIEL-------PALPPRLERLIASFNH-------LAEVPELP 356

Query: 335 PSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVS 394
            +++ L +      N  R        +  L+      N     +P    N   L+ L V 
Sbjct: 357 QNLKQLHVEY----NPLREFPDIPESVEDLRM-----NSHLAEVPELPQN---LKQLHVE 404

Query: 395 SNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEIN 449
           +N L       P     S+EDL ++      P          +L+    E++  +
Sbjct: 405 TNPLR-EFPDIP----ESVEDLRMNSERVVDPYEFAHE-TTDKLEDDVFEHHHHH 453

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  114 bits (287), Expect = 9e-28
 Identities = 49/295 (16%), Positives = 93/295 (31%), Gaps = 30/295 (10%)

Query: 128 LSNLKMLNLVGNLFNNSILSSLARLSSLTSLDLSANRLKGSIDIKGPKRLSRLNNLKVFD 187
            +  K+  +  +    ++ S      ++  LDLS N L   I       L+    L++ +
Sbjct: 9   GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QIS---AADLAPFTKLELLN 64

Query: 188 LSGNLFNNSILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEV 247
           LS N+        L  LS+LR+L L +N ++      E     ++E L  + N I     
Sbjct: 65  LSSNVLYE--TLDLESLSTLRTLDLNNNYVQ------ELLVGPSIETLHAANNNISRVSC 116

Query: 248 PQACSGLRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTETVTTTTQGFPHF 307
               S  +    ++L    I     L    G    +  LDL  N          +     
Sbjct: 117 ----SRGQGKKNIYLANNKITMLRDL--DEGCRSRVQYLDLKLNEIDT--VNFAELAASS 168

Query: 308 KSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQEL 367
            +L+ L +    I         +      ++ L LS+    N    +         +  +
Sbjct: 169 DTLEHLNLQYNFI---YDVKGQV--VFAKLKTLDLSS----NKLAFMGPEFQSAAGVTWI 219

Query: 368 HMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNH 422
            + +N L   +   L    +L   D+  N                ++ +      
Sbjct: 220 SLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK 273

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  107 bits (270), Expect = 1e-25
 Identities = 50/352 (14%), Positives = 112/352 (31%), Gaps = 57/352 (16%)

Query: 650 EIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRIL 709
           EI Q+ +     +   ++++SL   +     +   ++ + +  N +      +      L
Sbjct: 4   EIKQNGN---RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 710 QILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNG 769
           ++L++S N +            +  + L+ N +             ++  L  + N+++ 
Sbjct: 61  ELLNLSSNVLY-ETLDLESLSTLRTLDLNNNYVQ------ELLVGPSIETLHAANNNIS- 112

Query: 770 NIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHG-HIPSCFDN--- 825
            +            + LA+N +     +     +++Q LDL  N +   +      +   
Sbjct: 113 RVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT 170

Query: 826 -TTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSG 884
              L+ +YN    +                  + +                      L  
Sbjct: 171 LEHLNLQYNFIYDV----------------KGQVVFAK-------------------LKT 195

Query: 885 LDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKI 944
           LDLS N+L   + P+  +   +  ++L +N L   I       +N+E  DL  N      
Sbjct: 196 LDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGT 253

Query: 945 PYQLVELNTLAVFSVAYNNLSGKIPERAAQFATFNESSYEGNPFLCGPPLPI 996
                      V +VA   +  K+  +  +  T     + G       P P 
Sbjct: 254 LRDFF-SKNQRVQTVAKQTVK-KLTGQNEEECTVPTLGHYGAYCCEDLPAPF 303

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  106 bits (268), Expect = 2e-25
 Identities = 58/309 (18%), Positives = 115/309 (37%), Gaps = 59/309 (19%)

Query: 92  LNASLFTPFQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILSSLAR 151
             ASL      ++ LDL  N ++     +    L+  + L++LNL  N+        L  
Sbjct: 25  ALASLRQSAWNVKELDLSGNPLSQISAAD----LAPFTKLELLNLSSNVLYE--TLDLES 78

Query: 152 LSSLTSLDLSANRLKGSIDIKGPKRLSRLNNLKVFDLSGNLFNNSILSSLARLSSLRSLL 211
           LS+L +LDL+ N +         + L    +++    + N  +     S +R    +++ 
Sbjct: 79  LSTLRTLDLNNNYV---------QELLVGPSIETLHAANNNISR---VSCSRGQGKKNIY 126

Query: 212 LYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGIRDGS 271
           L +N++   +   +    S ++ LD+  NEID     +  +    L +L+L    I D  
Sbjct: 127 LANNKIT-MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD-- 183

Query: 272 KLLQSMGSFPSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDARIALNTSFLQIIG 331
             ++    F  L TLDLS N                              +   F     
Sbjct: 184 --VKGQVVFAKLKTLDLSSNKLAF--------------------------MGPEF----- 210

Query: 332 ESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLR-GSLPWCLANMTSLRI 390
           +S   + ++SL N    N    +++ L    +L+   +  N    G+L    +    ++ 
Sbjct: 211 QSAAGVTWISLRN----NKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQT 266

Query: 391 LDVSSNQLI 399
           +   + + +
Sbjct: 267 VAKQTVKKL 275

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 97.4 bits (243), Expect = 5e-22
 Identities = 58/353 (16%), Positives = 116/353 (32%), Gaps = 75/353 (21%)

Query: 361 LVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSD 420
               +   + D+ L+ +L     +  +++ LD+S N  +  IS++ L   T +E L LS 
Sbjct: 9   GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNP-LSQISAADLAPFTKLELLNLSS 67

Query: 421 NHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITF 480
           N          L + S L+  D  NN +  E+            +++L  +         
Sbjct: 68  NVLY---ETLDLESLSTLRTLDLNNNYVQ-EL-------LVGPSIETLHAA--------- 107

Query: 481 PKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLR 540
                N        +S +                 + + L                    
Sbjct: 108 ----NNN-------ISRVS---------CSRGQGKKNIYL-------------------- 127

Query: 541 LLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDG-SIPSSFGNMNFLQFLDLSNNQLT 599
               + N       L+ G   SR+   ++ +N +D  +      + + L+ L+L  N + 
Sbjct: 128 ----ANNKITMLRDLDEGC-RSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182

Query: 600 GEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNF-NLTNLIWLQLEGNHFVGEIPQSLSKC 658
            ++   +      L++L LS+N L        F +   + W+ L  N  V  I ++L   
Sbjct: 183 -DVKGQV--VFAKLKTLDLSSNKLA--FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFS 236

Query: 659 SSLQGLFLSNNSLS-GKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQ 710
            +L+   L  N    G +  +      ++ +             E C +  L 
Sbjct: 237 QNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLG 289

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 95.8 bits (239), Expect = 1e-21
 Identities = 50/289 (17%), Positives = 92/289 (31%), Gaps = 25/289 (8%)

Query: 434 NHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYV 493
           N +R KI    ++ +   +            ++ L LS      I+    L     LE +
Sbjct: 8   NGNRYKIEKVTDSSLKQALASLRQSAW---NVKELDLSGNPLSQIS-AADLAPFTKLELL 63

Query: 494 RLSH--IKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQG 551
            LS   +    +      E+ + LR L L N+ +       +     +  L  + NN   
Sbjct: 64  NLSSNVLYETLDL-----ESLSTLRTLDLNNNYVQE-----LLVGPSIETLHAANNNIS- 112

Query: 552 HIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCV 611
            +    G     +    ++ N +        G  + +Q+LDL  N++       LA    
Sbjct: 113 RVSCSRGQGKKNI---YLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSD 169

Query: 612 SLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSL 671
           +L  L L  N +             L  L L  N     +       + +  + L NN L
Sbjct: 170 TLEHLNLQYNFIY--DVKGQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKL 226

Query: 672 SGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNIS 720
              I + L     L H  +  N       L     +  ++  ++   + 
Sbjct: 227 V-LIEKALRFSQNLEHFDLRGNGFHC-GTLRDFFSKNQRVQTVAKQTVK 273

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 94.3 bits (235), Expect = 5e-21
 Identities = 51/307 (16%), Positives = 96/307 (31%), Gaps = 40/307 (13%)

Query: 92  LNASLFTPFQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILSSLAR 151
           ++A+   PF +LE L+L  N +           L  LS L+ L+L  N      +  L  
Sbjct: 49  ISAADLAPFTKLELLNLSSNVL------YETLDLESLSTLRTLDLNNNY-----VQELLV 97

Query: 152 LSSLTSLDLSANRLKGSIDIKGPKRLSRLNNLKVFDLSGNLFNNSILSSLARLSSLRSLL 211
             S+ +L  + N +   +        SR    K   L+ N             S ++ L 
Sbjct: 98  GPSIETLHAANNNIS-RVS------CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLD 150

Query: 212 LYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGIRDGS 271
           L  N ++     +   S   LE L++ YN I + +         KL  L L    +   +
Sbjct: 151 LKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVK---GQVVFAKLKTLDLSSNKL---A 204

Query: 272 KLLQSMGSFPSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDARIALNTSFLQIIG 331
            +     S   +  + L  N          +     ++L+   +        T  L+   
Sbjct: 205 FMGPEFQSAAGVTWISLRNNKL----VLIEKALRFSQNLEHFDLRGNGFHCGT--LRDFF 258

Query: 332 ESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRIL 391
                +Q ++             +  +  L H       D          L    + R++
Sbjct: 259 SKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCED----------LPAPFADRLI 308

Query: 392 DVSSNQL 398
            +  +  
Sbjct: 309 ALGHHHH 315

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 92.4 bits (230), Expect = 2e-20
 Identities = 53/349 (15%), Positives = 122/349 (34%), Gaps = 56/349 (16%)

Query: 327 LQIIGESMPSIQYLSLSNSSVSNNSRTLDQG-LCPLVHLQELHMADNDLRGSLPWCLANM 385
           +  I ++    +   +++    ++ +           +++EL ++ N L       LA  
Sbjct: 2   IHEIKQNGNRYKIEKVTD----SSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPF 57

Query: 386 TSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAEN 445
           T L +L++SSN L     +  L  L+++  L L++N+      ++ L     ++   A N
Sbjct: 58  TKLELLNLSSNVL---YETLDLESLSTLRTLDLNNNY------VQELLVGPSIETLHAAN 108

Query: 446 NEINAEIIESHSLTTPNFQ-LQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEF 504
           N I+        ++    Q  +++ L+              N+       ++ +      
Sbjct: 109 NNIS-------RVSCSRGQGKKNIYLA-------------NNK-------ITML------ 135

Query: 505 PNWLLENNTKLRQLSLVNDSLVG-PFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSR 563
            +      ++++ L L  + +    F     S   L  L++  N     +  ++    ++
Sbjct: 136 RDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQVV--FAK 192

Query: 564 LTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNL 623
           L   ++S N L   +   F +   + ++ L NN+L   I + L     +L    L  N  
Sbjct: 193 LKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALR-FSQNLEHFDLRGNGF 249

Query: 624 EGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLS 672
                 R+F   N     +          Q+  +C+             
Sbjct: 250 H-CGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCE 297

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 75.4 bits (186), Expect = 9e-15
 Identities = 48/343 (13%), Positives = 109/343 (31%), Gaps = 52/343 (15%)

Query: 226 FDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNT 285
             + +  +   ++ + +              +  L L    +   S     +  F  L  
Sbjct: 6   KQNGNRYKIEKVTDSSLKQAL-ASLRQSAWNVKELDLSGNPLSQISA--ADLAPFTKLEL 62

Query: 286 LDLSYNNFTETVTTTTQGFPHFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNS 345
           L+LS N   E     T       +L+ L +++  +              PSI+ L  +N 
Sbjct: 63  LNLSSNVLYE-----TLDLESLSTLRTLDLNNNYV---QEL-----LVGPSIETLHAAN- 108

Query: 346 SVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSS 405
              NN   +          + +++A+N +           + ++ LD+  N+ I +++ +
Sbjct: 109 ---NNISRVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNE-IDTVNFA 162

Query: 406 PLI-HLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQ 464
            L     ++E L L  N       ++     ++LK  D  +N++     E  S       
Sbjct: 163 ELAASSDTLEHLNLQYNFIY---DVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAA----G 215

Query: 465 LQSLLLSSGYRDGIT-FPKFLYNQHDLEYVRLSH-----IKMNEEFPNWLLENNTKLRQL 518
           +  + L +   + +    K L    +LE+  L         + + F           + +
Sbjct: 216 VTWISLRN---NKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTV 272

Query: 519 SLVNDSLVGPFRLPIHSHKQ------------LRLLDVSKNNF 549
             +         +P   H               RL+ +  ++ 
Sbjct: 273 KKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALGHHHH 315

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 51.5 bits (124), Expect = 7e-07
 Identities = 16/70 (22%), Positives = 30/70 (42%)

Query: 896 IPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLA 955
           I     N  + +   ++ ++L   + S   +  N++ LDLS N LS      L     L 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 956 VFSVAYNNLS 965
           + +++ N L 
Sbjct: 62  LLNLSSNVLY 71

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  115 bits (289), Expect = 4e-27
 Identities = 88/436 (20%), Positives = 143/436 (32%), Gaps = 75/436 (17%)

Query: 577 SIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNF-NLT 635
            +P+       + ++DLS N +  E+ E        L+ L +        + +  F  L+
Sbjct: 27  ELPAH------VNYVDLSLNSIA-ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLS 79

Query: 636 NLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSL-SGKIPR-WLGNLTVLRHIIMPKN 693
           +LI L+L+ N F+     + +  ++L+ L L+  +L    +   +   LT L  +++  N
Sbjct: 80  SLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDN 139

Query: 694 HIEGPIPLE-FCQLRILQILDISDNNISGSLPSCYDFVCIEQV---HLSKNMLH------ 743
           +I+   P   F  +R   +LD++ N +             +      LS   L       
Sbjct: 140 NIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYW 199

Query: 744 -GQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRL 802
            G  K G  F   ++  LDLS N    ++  R       + +     +            
Sbjct: 200 LGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSN---SYNMGSSF 256

Query: 803 NQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILES 862
                 D  N    G   S     T     +   +L                        
Sbjct: 257 GHTNFKDPDNFTFKGLEAS--GVKTCDLSKSKIFALLK--------------------SV 294

Query: 863 FDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQI-GNLTKIQTLNLSHNNLAGPIP 921
           F   T              L  L L+ N  I  I       LT +  LNLS N L     
Sbjct: 295 FSHFTD-------------LEQLTLAQNE-INKIDDNAFWGLTHLLKLNLSQNFLGSIDS 340

Query: 922 STFSNLRNIESLDLSYNKLSWKIPYQ----LVELNTLAVFSVAYNNLSGKIPERAAQFAT 977
             F NL  +E LDLSYN +   +  Q    L  L  L   ++  N L   +P+    F  
Sbjct: 341 RMFENLDKLEVLDLSYNHIRA-LGDQSFLGLPNLKEL---ALDTNQLK-SVPDGI--FDR 393

Query: 978 FNESSY---EGNPFLC 990
                      NP+ C
Sbjct: 394 LTSLQKIWLHTNPWDC 409

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  102 bits (257), Expect = 5e-23
 Identities = 78/366 (21%), Positives = 135/366 (36%), Gaps = 54/366 (14%)

Query: 76  VVVLDLSQTHRGEYWYLNASLFTPFQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLN 135
           V  +DLS     E   LN + F+  Q L+ L +        + N        LS+L +L 
Sbjct: 32  VNYVDLSLNSIAE---LNETSFSRLQDLQFLKVEQQTPGLVIRNNT---FRGLSSLIILK 85

Query: 136 LVGNLFNNSILSSLARLSSLTSLDLSANRLKGSIDIKGPKRLSRLNNLKVFDLSGNLFNN 195
           L  N F      +   L++L  L L+   L G++                  LSGN F  
Sbjct: 86  LDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAV------------------LSGNFFKP 127

Query: 196 SILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFE----VPQAC 251
                   L+SL  L+L DN ++       F ++     LD+++N++ +      +    
Sbjct: 128 --------LTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQG 179

Query: 252 SGLRKLSYLHLLRVGIRDGSKLLQSMGSF---PSLNTLDLSYNNFTETVTTTTQGFPHFK 308
                L    +    + +     +  G+     S+ TLDLS N F E++           
Sbjct: 180 KHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGT 239

Query: 309 SLKELYMDDARIAL---------NTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLC 359
            ++ L + ++             +       G     ++   LS     +    L + + 
Sbjct: 240 KIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSK----SKIFALLKSVF 295

Query: 360 -PLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLIL 418
                L++L +A N++          +T L  L++S N L GSI S    +L  +E L L
Sbjct: 296 SHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFL-GSIDSRMFENLDKLEVLDL 354

Query: 419 SDNHFQ 424
           S NH +
Sbjct: 355 SYNHIR 360

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 98.7 bits (246), Expect = 1e-21
 Identities = 86/463 (18%), Positives = 147/463 (31%), Gaps = 92/463 (19%)

Query: 362 VHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDN 421
            H+  + ++ N +        + +  L+ L V        I ++    L+S+  L L  N
Sbjct: 30  AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89

Query: 422 HFQIPISLEP-LFNH-SRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGIT 479
            F     LE   FN  + L++                        L   +LS  +   +T
Sbjct: 90  QFL---QLETGAFNGLANLEVLTLTQC-----------------NLDGAVLSGNFFKPLT 129

Query: 480 FPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQL 539
                     LE + L    + +  P     N  +   L L  + +     +        
Sbjct: 130 ---------SLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK---SICEEDLLNF 177

Query: 540 RLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLT 599
           +    +               LS +T+ +++   L      +      +  LDLS N   
Sbjct: 178 QGKHFTLLR------------LSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFK 225

Query: 600 GEIPEHL--AMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSK 657
             + +    A+    ++SL LSN+   G  F          +   +   F G       +
Sbjct: 226 ESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHT------NFKDPDNFTFKG------LE 273

Query: 658 CSSLQGLFLSNN---SLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDI 714
            S ++   LS +   +L   +     +L  L    + +N I       F  L  L  L++
Sbjct: 274 ASGVKTCDLSKSKIFALLKSVFSHFTDLEQLT---LAQNEINKIDDNAFWGLTHLLKLNL 330

Query: 715 SDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDR 774
           S N +  S+                           F N   L +LDLSYNH+   + D+
Sbjct: 331 SQNFLG-SID-----------------------SRMFENLDKLEVLDLSYNHI-RALGDQ 365

Query: 775 V-DGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLH 816
              GL  L  L L  N L+        RL  LQ + L  N   
Sbjct: 366 SFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 408

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 98.3 bits (245), Expect = 1e-21
 Identities = 56/311 (18%), Positives = 102/311 (32%), Gaps = 19/311 (6%)

Query: 129 SNLKMLNLVGNLFNNSILSSLARLSSLTSLDLSANRLKGSIDIKGPKRLSRLNNLKVFDL 188
           +++  ++L  N       +S +RL  L  L +        I          L++L +  L
Sbjct: 30  AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIR---NNTFRGLSSLIILKL 86

Query: 189 SGNLFNNSILSSLARLSSLRSLLLYDNRLEGS-IDVKEFDSLSNLEELDMSYNEIDNFEV 247
             N F      +   L++L  L L    L+G+ +    F  L++LE L +  N I   + 
Sbjct: 87  DYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQP 146

Query: 248 PQACSGLRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTETVTTTTQG---- 303
                 +R+   L L    ++   +             L LS     +            
Sbjct: 147 ASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCG 206

Query: 304 -FPHFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSS------VSNNSRTLDQ 356
                 S+  L +       + +       +   IQ L LSNS          N +  D 
Sbjct: 207 NPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDN 266

Query: 357 GLC---PLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSI 413
                     ++   ++ + +   L    ++ T L  L ++ N+ I  I  +    LT +
Sbjct: 267 FTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNE-INKIDDNAFWGLTHL 325

Query: 414 EDLILSDNHFQ 424
             L LS N   
Sbjct: 326 LKLNLSQNFLG 336

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 92.1 bits (229), Expect = 2e-19
 Identities = 94/473 (19%), Positives = 153/473 (32%), Gaps = 103/473 (21%)

Query: 182 NLKVFDLSGNLFNNSILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNE 241
           ++   DLS N       +S +RL  L+ L +        I    F  LS+L  L + YN+
Sbjct: 31  HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ 90

Query: 242 IDNFEVPQACSGLRKLSYLHLLRVGIRDGSKLLQSMGSF---PSLNTLDLSYNNFTETVT 298
               E   A +GL  L  L L +  +     +L     F    SL  L L  NN  +   
Sbjct: 91  FLQLE-TGAFNGLANLEVLTLTQCNLD--GAVLSG-NFFKPLTSLEMLVLRDNNIKKIQP 146

Query: 299 TTTQGFPHFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGL 358
            +   F + +    L +   ++           +S+     L+      +          
Sbjct: 147 ASF--FLNMRRFHVLDLTFNKV-----------KSICEEDLLNFQGKHFTLLR------- 186

Query: 359 CPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLIL 418
             L  +    M +  L           TS+  LD+S N    S++      +   +   L
Sbjct: 187 --LSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSL 244

Query: 419 SDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGI 478
             ++     S     N                           NF  + L  S       
Sbjct: 245 ILSNSYNMGSSFGHTNFKDP----------------------DNFTFKGLEASG------ 276

Query: 479 TFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQ 538
                      ++   LS  K+       +  + T L QL+L                  
Sbjct: 277 -----------VKTCDLSKSKIF-ALLKSVFSHFTDLEQLTL------------------ 306

Query: 539 LRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPS-SFGNMNFLQFLDLSNNQ 597
                 ++N     I       L+ L   N+S N L GSI S  F N++ L+ LDLS N 
Sbjct: 307 ------AQNEIN-KIDDNAFWGLTHLLKLNLSQNFL-GSIDSRMFENLDKLEVLDLSYNH 358

Query: 598 LTGEIPEHLAMGCVSLRSLALSNNNLE---GHMFSRNFNLTNLIWLQLEGNHF 647
           +   + +   +G  +L+ LAL  N L+     +F     LT+L  + L  N +
Sbjct: 359 IR-ALGDQSFLGLPNLKELALDTNQLKSVPDGIFD---RLTSLQKIWLHTNPW 407

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 74.8 bits (184), Expect = 5e-14
 Identities = 60/274 (21%), Positives = 107/274 (39%), Gaps = 39/274 (14%)

Query: 94  ASLFTPFQQLESLDLRDNDIAGCVENEGLERLS-------RLSNLKMLNLVGNLFNNSIL 146
           AS F   ++   LDL  N +   +  E L           RLS++ + ++          
Sbjct: 147 ASFFLNMRRFHVLDLTFNKVK-SICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKC 205

Query: 147 SSLARLSSLTSLDLSANRLKGSIDIKGPKRLS---------RLNNLKVFDLSGNLFNNSI 197
            +  + +S+T+LDLS N  K S+  +    ++           +           F +  
Sbjct: 206 GNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPD 265

Query: 198 LSSLARL--SSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLR 255
             +   L  S +++  L  +++  ++    F   ++LE+L ++ NEI+  +   A  GL 
Sbjct: 266 NFTFKGLEASGVKTCDLSKSKIF-ALLKSVFSHFTDLEQLTLAQNEINKID-DNAFWGLT 323

Query: 256 KLSYLHLLRVGIRDGSKLLQSM--GSF---PSLNTLDLSYNNFTETVTTTTQGFPHFKSL 310
            L  L+L           L S+    F     L  LDLSYN+         Q F    +L
Sbjct: 324 HLLKLNL-------SQNFLGSIDSRMFENLDKLEVLDLSYNHIR---ALGDQSFLGLPNL 373

Query: 311 KELYMDDARIALNTSFLQIIGESMPSIQYLSLSN 344
           KEL +D  ++    S    I + + S+Q + L  
Sbjct: 374 KELALDTNQL---KSVPDGIFDRLTSLQKIWLHT 404

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  113 bits (285), Expect = 2e-26
 Identities = 97/494 (19%), Positives = 178/494 (36%), Gaps = 45/494 (9%)

Query: 335 PSIQYLSLSNSSVSNNSRTLDQG-LCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDV 393
                L++S     N    L    +  L  L+ L ++ N ++            L  LD+
Sbjct: 21  QKTTILNISQ----NYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDL 76

Query: 394 SSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNH-SRLKIFDAENNEINAEI 452
           S N+L             +++ L LS N F   + +   F + S+LK        +    
Sbjct: 77  SHNKL----VKISCHPTVNLKHLDLSFNAFDA-LPICKEFGNMSQLKFLGLSTTHLEKSS 131

Query: 453 IESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENN 512
           +   +    +  L  L  + G ++     +    +  L  V  ++ + +           
Sbjct: 132 VLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTES-LHIVFPTNKEFH----------- 179

Query: 513 TKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMN 572
                  +++ S+     L + + K +   +           L+    LS LT+ NI   
Sbjct: 180 ------FILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETT 233

Query: 573 ALDGSIPSSFGNMNFLQFLDLSNNQLTGEIP-EHLAMGCVSLRSLALSNNNLEGHMFSRN 631
                          + +  +SN +L G++          SL++L++     +   F ++
Sbjct: 234 WNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQS 293

Query: 632 F---NLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHI 688
           +     +N+       +          SK S    L  SNN L+  +    G+LT L  +
Sbjct: 294 YIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETL 353

Query: 689 IMPKNHIE--GPIPLEFCQLRILQILDISDNNISGSLP--SCYDFVCIEQVHLSKNMLHG 744
           I+  N ++    I     Q++ LQ LDIS N++S       C     +  +++S N    
Sbjct: 354 ILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSN---- 409

Query: 745 QLKEGTFFNCLT--LMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRL 802
            L +  F  CL   + +LDL  N +  +IP +V  L  L  L +A N L+        RL
Sbjct: 410 ILTDTIF-RCLPPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRL 467

Query: 803 NQLQLLDLSNNNLH 816
             LQ + L  N   
Sbjct: 468 TSLQKIWLHTNPWD 481

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  112 bits (282), Expect = 5e-26
 Identities = 93/519 (17%), Positives = 171/519 (32%), Gaps = 69/519 (13%)

Query: 182 NLKVFDLSGNLFNNSILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNE 241
              + ++S N  +    S +  LS LR L++  NR++  +D+  F     LE LD+S+N+
Sbjct: 22  KTTILNISQNYISELWTSDILSLSKLRILIISHNRIQ-YLDISVFKFNQELEYLDLSHNK 80

Query: 242 IDNFEVPQACSGLRKLSYLHLLRVGIRDGSKLLQSMGSF---PSLNTLDLSYNNFTETVT 298
           +       +C     L +L L           L     F     L  L LS  +  ++  
Sbjct: 81  LVKI----SCHPTVNLKHLDLSFNAFDA----LPICKEFGNMSQLKFLGLSTTHLEKSS- 131

Query: 299 TTTQGFPHFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGL 358
                      L    +               G    + + L +   +       LD  +
Sbjct: 132 -----VLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSV 186

Query: 359 CPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLIL 418
             + +L+  ++          + L+ +  L+     SN               ++ ++  
Sbjct: 187 KTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSN--------------LTLNNIET 232

Query: 419 SDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGI 478
           + N F   I +  L  H+ +  F   N ++  ++                          
Sbjct: 233 TWNSF---IRILQLVWHTTVWYFSISNVKLQGQL-------------------------- 263

Query: 479 TFPKFLYNQHDLEYVRLSHIKMNE--EFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSH 536
            F  F Y+   L+ + +  +  +      +++ E  + +   +           L     
Sbjct: 264 DFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKI 323

Query: 537 KQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALD--GSIPSSFGNMNFLQFLDLS 594
                LD S N        E    L+ L    + MN L     I      M  LQ LD+S
Sbjct: 324 SPFLHLDFSNNLLT-DTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDIS 382

Query: 595 NNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQS 654
            N ++ +  +       SL SL +S+N L   +F        +  L L  N     IP+ 
Sbjct: 383 QNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRC--LPPRIKVLDLHSNKIK-SIPKQ 439

Query: 655 LSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKN 693
           + K  +LQ L +++N L          LT L+ I +  N
Sbjct: 440 VVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTN 478

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  112 bits (282), Expect = 5e-26
 Identities = 84/504 (16%), Positives = 171/504 (33%), Gaps = 53/504 (10%)

Query: 153 SSLTSLDLSANRLKGSIDIKGPKRLSRLNNLKVFDLSGNLFNNSILSSLARLSSLRSLLL 212
              T L++S N +   +       +  L+ L++  +S N      +S       L  L L
Sbjct: 21  QKTTILNISQNYIS-ELW---TSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDL 76

Query: 213 YDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGIRDGSK 272
             N+L   I         NL+ LD+S+N  D   + +    + +L +L L    +     
Sbjct: 77  SHNKLV-KIS---CHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKS-- 130

Query: 273 LLQSMGSFPSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDARIAL--NTSFLQII 330
              S+     LN   +                   + L++   +   I    N  F  I+
Sbjct: 131 ---SVLPIAHLNISKVLLVLGETYGE-----KEDPEGLQDFNTESLHIVFPTNKEFHFIL 182

Query: 331 GESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRI 390
             S+ ++  L LSN             +  ++   +     + L         +  +L  
Sbjct: 183 DVSVKTVANLELSN-------------IKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNN 229

Query: 391 LDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPL-FNHSRLKIFDAENNEIN 449
           ++ + N     I    L+  T++    +S+   Q  +      ++ + LK         +
Sbjct: 230 IETTWNSF---IRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSD 286

Query: 450 AEIIESHSLTT--PNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNW 507
                   +     N  +++  +S      +  P  +       ++  S+  + +     
Sbjct: 287 VFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISP---FLHLDFSNNLLTDTVFE- 342

Query: 508 LLENNTKLRQLSLVNDSL--VGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLT 565
              + T+L  L L  + L  +          K L+ LD+S+N+               L 
Sbjct: 343 NCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLL 402

Query: 566 VFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEG 625
             N+S N L  +I         ++ LDL +N++   IP+   +   +L+ L +++N L  
Sbjct: 403 SLNMSSNILTDTIFRCL--PPRIKVLDLHSNKIK-SIPKQ-VVKLEALQELNVASNQL-- 456

Query: 626 HMFSRNF--NLTNLIWLQLEGNHF 647
                     LT+L  + L  N +
Sbjct: 457 KSVPDGIFDRLTSLQKIWLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  106 bits (265), Expect = 7e-24
 Identities = 81/445 (18%), Positives = 144/445 (32%), Gaps = 46/445 (10%)

Query: 533 IHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLD 592
           I S  +LR+L +S N  Q ++ + +      L   ++S N L   I         L+ LD
Sbjct: 41  ILSLSKLRILIISHNRIQ-YLDISVFKFNQELEYLDLSHNKL-VKIS--CHPTVNLKHLD 96

Query: 593 LSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNL-IWLQLEGNHFVGEI 651
           LS N                L+ L LS  +LE        +L    + L L   +   E 
Sbjct: 97  LSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKED 156

Query: 652 PQSLSKC--SSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEG------PIPLEF 703
           P+ L      SL  +F +N      +   +  +  L    +     +        I  + 
Sbjct: 157 PEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKL 216

Query: 704 CQLRILQILDISDNNISG----SLPSCYDFVCIEQVHLSKNMLHGQLK----EGTFFNCL 755
                L  L +++   +      +        +    +S   L GQL     + +  +  
Sbjct: 217 QTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLK 276

Query: 756 TLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNL 815
            L I  +  +          +  S ++      +       +   +++    LD SNN L
Sbjct: 277 ALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLL 336

Query: 816 HGHIPSCFDN----TTLHERYNNGSSLQPFETSF------------------VIMGGMDV 853
              +     +     TL  + N    L                             G   
Sbjct: 337 TDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCS 396

Query: 854 DPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSH 913
             K   L S + ++  +T T    +P  +  LDL  N++   IP Q+  L  +Q LN++ 
Sbjct: 397 WTKS--LLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKI-KSIPKQVVKLEALQELNVAS 453

Query: 914 NNLAGPIPSTFSNLRNIESLDLSYN 938
           N L       F  L +++ + L  N
Sbjct: 454 NQLKSVPDGIFDRLTSLQKIWLHTN 478

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  103 bits (259), Expect = 4e-23
 Identities = 86/450 (19%), Positives = 158/450 (35%), Gaps = 44/450 (9%)

Query: 541 LLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTG 600
           L+D SKN    H+P    D+  + T+ NIS N +     S   +++ L+ L +S+N++  
Sbjct: 4   LVDRSKNGLI-HVP---KDLSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQ- 58

Query: 601 EIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQS--LSKC 658
            +   +      L  L LS+N L            NL  L L  N F   +P        
Sbjct: 59  YLDISVFKFNQELEYLDLSHNKLVKISCHP---TVNLKHLDLSFNAF-DALPICKEFGNM 114

Query: 659 SSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHI---EGPIPLEFCQLRILQILDIS 715
           S L+ L LS   L       + +L + + +++        E P  L+      L I+  +
Sbjct: 115 SQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPT 174

Query: 716 DNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMI------LDLSYNHLNG 769
           +      L      V   ++   K +L              L        L L+      
Sbjct: 175 NKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTW 234

Query: 770 NIPDRVDGL---SQLSYLILAHNNLEG-----EVPIQLCRLNQLQLLDLSNNNLHGHIPS 821
           N   R+  L   + + Y  +++  L+G     +       L  L +  + ++        
Sbjct: 235 NSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSY 294

Query: 822 CFDN-TTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPS 880
            ++  + ++ +    S  +           M    K       DF+   +T T       
Sbjct: 295 IYEIFSNMNIKNFTVSGTRMVH--------MLCPSKISPFLHLDFSNNLLTDTVFENCGH 346

Query: 881 L--LSGLDLSCNRL--IGHIPPQIGNLTKIQTLNLSHNNL-AGPIPSTFSNLRNIESLDL 935
           L  L  L L  N+L  +  I      +  +Q L++S N++         S  +++ SL++
Sbjct: 347 LTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNM 406

Query: 936 SYNKLSWKIPYQLVELNTLAVFSVAYNNLS 965
           S N L+  I   L     + V  +  N + 
Sbjct: 407 SSNILTDTIFRCL--PPRIKVLDLHSNKIK 434

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =   99 bits (249), Expect = 6e-22
 Identities = 88/556 (15%), Positives = 174/556 (31%), Gaps = 110/556 (19%)

Query: 78  VLDLSQTHRGEYWYLNASLFTPFQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLV 137
           +L++SQ +      L  S      +L  L +  N I   ++    +    L  L      
Sbjct: 25  ILNISQNY---ISELWTSDILSLSKLRILIISHNRIQ-YLDISVFKFNQELEYL------ 74

Query: 138 GNLFNNSILS-SLARLSSLTSLDLSANRLKGSIDIKGPKRLSRLNNLKVFDLSGNLFNNS 196
            +L +N ++  S     +L  LDLS N       +   K    ++ LK   LS      S
Sbjct: 75  -DLSHNKLVKISCHPTVNLKHLDLSFNAFD---ALPICKEFGNMSQLKFLGLSTTHLEKS 130

Query: 197 ILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDN----FEVPQACS 252
            +  +A L+  + LL+         + ++ + L +     +      N    F +  +  
Sbjct: 131 SVLPIAHLNISKVLLVLGETY---GEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVK 187

Query: 253 GLRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNT----LDLSYNNFTETVTTTTQGFPHFK 308
            +  L   ++  V   +      S+ +    N     L L+    T              
Sbjct: 188 TVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHT 247

Query: 309 SLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELH 368
           ++    + + ++       +    S  S++ LS+                    ++   +
Sbjct: 248 TVWYFSISNVKL-QGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKN 306

Query: 369 MADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPIS 428
              +  R     C + ++    LD S+N L          HLT +E LIL  N       
Sbjct: 307 FTVSGTRMVHMLCPSKISPFLHLDFSNNLLT-DTVFENCGHLTELETLILQMN------- 358

Query: 429 LEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQH 488
                                              QL+ L   +     +   + L    
Sbjct: 359 -----------------------------------QLKELSKIAEMTTQMKSLQQL---- 379

Query: 489 DLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLV-GPFRLPIHSHKQLRLLDVSKN 547
           D+    +S+ +   +  +W       L  L++ ++ L    FR       ++++LD+  N
Sbjct: 380 DISQNSVSYDEKKGDC-SWT----KSLLSLNMSSNILTDTIFRCLPP---RIKVLDLHSN 431

Query: 548 NFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLA 607
             +                          SIP     +  LQ L++++NQL   +P+ + 
Sbjct: 432 KIK--------------------------SIPKQVVKLEALQELNVASNQLK-SVPDGIF 464

Query: 608 MGCVSLRSLALSNNNL 623
               SL+ + L  N  
Sbjct: 465 DRLTSLQKIWLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 88.8 bits (220), Expect = 2e-18
 Identities = 83/540 (15%), Positives = 164/540 (30%), Gaps = 89/540 (16%)

Query: 386 TSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEP-LFNH-SRLKIFDA 443
               IL++S N  I  + +S ++ L+ +  LI+S N  Q    L+  +F     L+  D 
Sbjct: 21  QKTTILNISQNY-ISELWTSDILSLSKLRILIISHNRIQ---YLDISVFKFNQELEYLDL 76

Query: 444 ENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEE 503
            +N++    I  H        L+ L LS             +N           + + +E
Sbjct: 77  SHNKLVK--ISCHPTV----NLKHLDLS-------------FNA-------FDALPICKE 110

Query: 504 FPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSR 563
           F N      ++L+ L L    L    +  +     L +  V     + +   E  + L  
Sbjct: 111 FGNM-----SQLKFLGLSTTHLE---KSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQD 162

Query: 564 LTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNL 623
               ++ +            +++     +L  + +   + ++     +S+ +   +N  L
Sbjct: 163 FNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKL 222

Query: 624 EGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLT 683
                  N  L N+          +  +  +     S+  + L              +L 
Sbjct: 223 ------SNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLK 276

Query: 684 VLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYD-FVCIEQVHLSKNML 742
            L    +  +    P    +     + I + + +        C         +  S N+L
Sbjct: 277 ALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLL 336

Query: 743 HGQLKEGTFFNCLTLMILDLSYNHLN--GNIPDRVDGLSQLSYLILAHNNLEGEVPIQLC 800
                     +   L  L L  N L     I +    +  L  L ++ N++  +     C
Sbjct: 337 T-DTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDC 395

Query: 801 -RLNQLQLLDLSNNNLHGHIPSCFDN--TTLHERYNNGSSLQPFETSFVIMGGMDVDPKK 857
                L  L++S+N L   I  C       L    N   S+                   
Sbjct: 396 SWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKSIPK----------------- 438

Query: 858 QILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQI-GNLTKIQTLNLSHNNL 916
              +                    L  L+++ N+L   +P  I   LT +Q + L  N  
Sbjct: 439 ---QVVKLEA--------------LQELNVASNQL-KSVPDGIFDRLTSLQKIWLHTNPW 480

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  114 bits (286), Expect = 3e-26
 Identities = 72/320 (22%), Positives = 118/320 (36%), Gaps = 52/320 (16%)

Query: 530 RLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQ 589
           ++    +    +L+V ++     +P  +   ++ L    I  N L  S+P+       L+
Sbjct: 33  KMRACLNNGNAVLNVGESGLT-TLPDCLPAHITTL---VIPDNNLT-SLPALPPE---LR 84

Query: 590 FLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVG 649
            L++S NQLT  +P     G + L   +    +L           + L  L + GN    
Sbjct: 85  TLEVSGNQLT-SLPVLPP-GLLELSIFSNPLTHLPA-------LPSGLCKLWIFGNQL-T 134

Query: 650 EIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRIL 709
            +P        LQ L +S+N L+  +P     L  L       N +   +P+       L
Sbjct: 135 SLPVLP---PGLQELSVSDNQLA-SLPALPSELCKLW---AYNNQLTS-LPMLPSG---L 183

Query: 710 QILDISDNNISGSLPSCYDFVCIEQVHLSKNMLH------GQLKE-GTFFNCLT------ 756
           Q L +SDN ++ SLP+      + ++    N L         LKE     N LT      
Sbjct: 184 QELSVSDNQLA-SLPT--LPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLPVLP 240

Query: 757 --LMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNN 814
             L  L +S N L  ++P      S L  L +  N L   +P  L  L+    ++L  N 
Sbjct: 241 SELKELMVSGNRLT-SLPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNP 295

Query: 815 LHGHIPSCFDNTTLHERYNN 834
           L           T    Y+ 
Sbjct: 296 LSERTLQALREITSAPGYSG 315

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  109 bits (274), Expect = 1e-24
 Identities = 79/428 (18%), Positives = 126/428 (29%), Gaps = 104/428 (24%)

Query: 561 LSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSN 620
            +   V N+  + L  ++P        +  L + +N LT  +P         LR+L +S 
Sbjct: 39  NNGNAVLNVGESGL-TTLPDCLPA--HITTLVIPDNNLT-SLPALPP----ELRTLEVSG 90

Query: 621 NNLEGHMFSRNF-NLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWL 679
           N L           L  L        H            S L  L++  N L+  +P   
Sbjct: 91  NQLT--SLPVLPPGLLELSIFSNPLTHLPALP-------SGLCKLWIFGNQLT-SLPVLP 140

Query: 680 GNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSK 739
             L  L    +  N +   +P    +L     L   +N ++ SLP               
Sbjct: 141 PGLQELS---VSDNQLAS-LPALPSEL---CKLWAYNNQLT-SLPM-------------- 178

Query: 740 NMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQL 799
             L   L+E           L +S N L  ++P      S+L  L   +N L   +P   
Sbjct: 179 --LPSGLQE-----------LSVSDNQLA-SLPT---LPSELYKLWAYNNRLT-SLPALP 220

Query: 800 CRLNQLQLLDLSNNNLHGHIPSCFDN-TTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQ 858
                L+ L +S N L   +P        L    N  +SL P                  
Sbjct: 221 S---GLKELIVSGNRL-TSLPVLPSELKELMVSGNRLTSL-PML---------------- 259

Query: 859 ILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAG 918
                               PS L  L +  N+L   +P  + +L+   T+NL  N L+ 
Sbjct: 260 --------------------PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSE 298

Query: 919 PIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQFATF 978
                   + +         +          E   L     A + L        A    +
Sbjct: 299 RTLQALREITSAPGYSGPIIRFDMAGASAPRETRALH--LAAADWLVPAREGEPAPADRW 356

Query: 979 NESSYEGN 986
           +    E N
Sbjct: 357 HMFGQEDN 364

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  104 bits (260), Expect = 5e-23
 Identities = 78/372 (20%), Positives = 127/372 (34%), Gaps = 76/372 (20%)

Query: 102 QLESLDLRDNDIAGCVENEGLERL--SRLSNLKMLNLVGNLFNNSILSSLARLSSLTSLD 159
               L++ ++         GL  L     +++  L +     +N++ S  A    L +L+
Sbjct: 41  GNAVLNVGES---------GLTTLPDCLPAHITTLVI----PDNNLTSLPALPPELRTLE 87

Query: 160 LSANRLKGSIDIKGPKRLSRLNNLKVFDLSGNLFNNSILSSLARLSSLRSLLLYDNRLEG 219
           +S N+L  S+    P     L  L +F           L +L   S L  L ++ N+L  
Sbjct: 88  VSGNQLT-SL----PVLPPGLLELSIFSNPLTH-----LPAL--PSGLCKLWIFGNQLT- 134

Query: 220 SIDVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGIRDGSKLLQSMGS 279
           S+          L+EL +S N++ +   P   S L KL   +          +L      
Sbjct: 135 SLP----VLPPGLQELSVSDNQLASL--PALPSELCKLWAYNN---------QLTSLPML 179

Query: 280 FPSLNTLDLSYNNFTETVTTTTQGFPH-FKSLKELYMDDARIALNTSFLQIIGESMPSIQ 338
              L  L +S N             P     L +L+  + R       L  +      ++
Sbjct: 180 PSGLQELSVSDNQLAS--------LPTLPSELYKLWAYNNR-------LTSLPALPSGLK 224

Query: 339 YLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQL 398
            L +S     N   +L         L+EL ++ N L  SLP      + L  L V  NQL
Sbjct: 225 ELIVSG----NRLTSLPVLPS---ELKELMVSGNRLT-SLP---MLPSGLLSLSVYRNQL 273

Query: 399 IGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSL 458
              +  S LIHL+S   + L  N    P+S   L     +      +  I    +   S 
Sbjct: 274 T-RLPES-LIHLSSETTVNLEGN----PLSERTLQALREITSAPGYSGPIIRFDMAGASA 327

Query: 459 TTPNFQLQSLLL 470
                 L     
Sbjct: 328 PRETRALHLAAA 339

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 96.5 bits (240), Expect = 1e-20
 Identities = 66/364 (18%), Positives = 107/364 (29%), Gaps = 76/364 (20%)

Query: 100 FQQLESLDLRDNDIAGCVENEGLERL-SRLSNLKMLNLVGNLFNNSILSSLARLSSLTSL 158
              + +L + DN+         L  L +    L+ L + GN    S+      L  L+  
Sbjct: 60  PAHITTLVIPDNN---------LTSLPALPPELRTLEVSGNQL-TSLPVLPPGLLELSIF 109

Query: 159 DLSANRLKGSIDIKGPKRLSRLNNLKVFDLSGN----------------LFNNSILSSLA 202
                 L                 L    + GN                + +N + S  A
Sbjct: 110 SNPLTHLPALPS-----------GLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLASLPA 158

Query: 203 RLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHL 262
             S L  L  Y+N+L  S+        S L+EL +S N++    +P   S L KL   + 
Sbjct: 159 LPSELCKLWAYNNQLT-SLP----MLPSGLQELSVSDNQLA--SLPTLPSELYKLWAYNN 211

Query: 263 LRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDARIAL 322
                    +L         L  L +S N  T               LKEL +   R   
Sbjct: 212 ---------RLTSLPALPSGLKELIVSGNRLTSL-------PVLPSELKELMVSGNR--- 252

Query: 323 NTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCL 382
               L  +      +  LS+      N    L + L  L     +++  N L        
Sbjct: 253 ----LTSLPMLPSGLLSLSVYR----NQLTRLPESLIHLSSETTVNLEGNPLS-ERTLQ- 302

Query: 383 ANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFD 442
             +  +      S  +I     +          L L+   + +P          R  +F 
Sbjct: 303 -ALREITSAPGYSGPII-RFDMAGASAPRETRALHLAAADWLVPAREGEPAPADRWHMFG 360

Query: 443 AENN 446
            E+N
Sbjct: 361 QEDN 364

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 87.6 bits (217), Expect = 7e-18
 Identities = 68/390 (17%), Positives = 114/390 (29%), Gaps = 80/390 (20%)

Query: 150 ARLSSLTSLDLSANRLKGSIDIKGPKRLSRLN--------------NLKVFDLSGNLFNN 195
              +    L++  + L  ++    P  ++ L                L+  ++SGN    
Sbjct: 37  CLNNGNAVLNVGESGLT-TLPDCLPAHITTLVIPDNNLTSLPALPPELRTLEVSGNQL-T 94

Query: 196 SILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLR 255
           S+      L  L         L            S L +L +  N++ +   P    GL+
Sbjct: 95  SLPVLPPGLLELSIFSNPLTHLP--------ALPSGLCKLWIFGNQLTSL--PVLPPGLQ 144

Query: 256 KLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTETVTTTTQGFP-HFKSLKELY 314
           +LS             +L         L  L    N  T          P     L+EL 
Sbjct: 145 ELSVSDN---------QLASLPALPSELCKLWAYNNQLTS--------LPMLPSGLQELS 187

Query: 315 MDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDL 374
           + D +       L  +      +  L   N    N   +L         L+EL ++ N L
Sbjct: 188 VSDNQ-------LASLPTLPSELYKLWAYN----NRLTSLPALPS---GLKELIVSGNRL 233

Query: 375 RGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQ-IPISLEPLF 433
             SLP      + L+ L VS N+L  S+        + +  L +  N    +P   E L 
Sbjct: 234 T-SLP---VLPSELKELMVSGNRLT-SLPML----PSGLLSLSVYRNQLTRLP---ESLI 281

Query: 434 NHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYV 493
           + S     + E N ++               L+ +  + GY   I            E  
Sbjct: 282 HLSSETTVNLEGNPLS---------ERTLQALREITSAPGYSGPIIRFDMAGASAPRETR 332

Query: 494 RLSHIKMNEEFPNWLLENNTKLRQLSLVND 523
            L     +   P    E     R      +
Sbjct: 333 ALHLAAADWLVPAREGEPAPADRWHMFGQE 362

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 77.6 bits (191), Expect = 9e-15
 Identities = 58/275 (21%), Positives = 97/275 (35%), Gaps = 64/275 (23%)

Query: 701 LEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLH------GQLKEGTFFNC 754
           +  C      +L++ ++ ++ +LP C     I  + +  N L        +L+       
Sbjct: 34  MRACLNNGNAVLNVGESGLT-TLPDC-LPAHITTLVIPDNNLTSLPALPPELRT------ 85

Query: 755 LTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNN 814
                L++S N L  ++P    GL +LS       +L           + L  L +  N 
Sbjct: 86  -----LEVSGNQLT-SLPVLPPGLLELSIFSNPLTHLPAL-------PSGLCKLWIFGNQ 132

Query: 815 LHGHIPSCFDN-TTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYT 873
           L   +P        L    N  +SL    +                L         +T  
Sbjct: 133 LT-SLPVLPPGLQELSVSDNQLASLPALPSE---------------LCKLWAYNNQLT-- 174

Query: 874 YQGRVPSLLSG---LDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNI 930
               +P L SG   L +S N+L   +P     L K   L   +N L   +P+  S L+  
Sbjct: 175 ---SLPMLPSGLQELSVSDNQLA-SLPTLPSELYK---LWAYNNRLT-SLPALPSGLK-- 224

Query: 931 ESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLS 965
             L +S N+L+  +P    EL  L    V+ N L+
Sbjct: 225 -ELIVSGNRLT-SLPVLPSELKEL---MVSGNRLT 254

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  109 bits (274), Expect = 6e-26
 Identities = 51/346 (14%), Positives = 102/346 (29%), Gaps = 70/346 (20%)

Query: 490 LEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNF 549
            E +          + + L    ++ ++    + +         +S+   ++   +    
Sbjct: 14  RENLYFQGSTALRPYHDVL----SQWQRHYNADRNRWHSAWRQANSNN-PQIETRTGRAL 68

Query: 550 QGHIPLEIGDI-LSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAM 608
           +      + D          +    L    P     ++ LQ + +    L  E+P+ +  
Sbjct: 69  K-ATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQ- 124

Query: 609 GCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSN 668
                                       L  L L  N     +P S++  + L+ L +  
Sbjct: 125 ------------------------QFAGLETLTLARNPLR-ALPASIASLNRLRELSIRA 159

Query: 669 NSLSGKIPRWLGNLTV---------LRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNI 719
                ++P  L +            L+ + +    I   +P     L+ L+ L I ++ +
Sbjct: 160 CPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRS-LPASIANLQNLKSLKIRNSPL 218

Query: 720 SGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLS 779
           S +L                             +   L  LDL       N P    G +
Sbjct: 219 S-ALGP------------------------AIHHLPKLEELDLRGCTALRNYPPIFGGRA 253

Query: 780 QLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDN 825
            L  LIL   +    +P+ + RL QL+ LDL        +PS    
Sbjct: 254 PLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQ 299

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  108 bits (272), Expect = 9e-26
 Identities = 52/397 (13%), Positives = 103/397 (25%), Gaps = 89/397 (22%)

Query: 561 LSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPE--HLAMGCVSLRSLAL 618
            S         +                   D +            +  +   + R+L  
Sbjct: 11  SSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKA 70

Query: 619 SNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRW 678
           + + LE      +      + L+L       + P    + S LQ + +    L  ++P  
Sbjct: 71  TADLLE------DATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDT 122

Query: 679 LGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLS 738
           +     L  + + +N +   +P     L  L+ L I        LP              
Sbjct: 123 MQQFAGLETLTLARNPLRA-LPASIASLNRLRELSIRACPELTELPE------------- 168

Query: 739 KNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQ 798
                                        + +      GL  L  L L    +   +P  
Sbjct: 169 --------------------------PLASTDASGEHQGLVNLQSLRLEWTGIR-SLPAS 201

Query: 799 LCRLNQLQLLDLSNNNLHGHIPSCFDN----TTLHERYNNGSSLQPFETSFVIMGGMDVD 854
           +  L  L+ L + N+ L   +     +      L  R     +L+ +   F         
Sbjct: 202 IANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCT--ALRNYPPIF--------- 249

Query: 855 PKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHN 914
                                G    L   L L     +  +P  I  LT+++ L+L   
Sbjct: 250 ---------------------GGRAPLKR-LILKDCSNLLTLPLDIHRLTQLEKLDLRGC 287

Query: 915 NLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVEL 951
                +PS  + L     + +  +  +    ++ V  
Sbjct: 288 VNLSRLPSLIAQLPANCIILVPPHLQAQLDQHRPVAR 324

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  103 bits (259), Expect = 6e-24
 Identities = 49/340 (14%), Positives = 99/340 (29%), Gaps = 56/340 (16%)

Query: 633 NLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPK 692
           + +    L  +G+  +      LS+         +    + +      N    +      
Sbjct: 10  HSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQA----NSNNPQIETRTG 65

Query: 693 NHIEG-PIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTF 751
             ++     LE         L++    +    P                           
Sbjct: 66  RALKATADLLEDATQPGRVALELRSVPLP-QFPD------------------------QA 100

Query: 752 FNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLS 811
           F    L  + +    L   +PD +   + L  L LA N L   +P  +  LN+L+ L + 
Sbjct: 101 FRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIR 158

Query: 812 NNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSIT 871
                  +P    +T     +    +LQ     +  +        + +  S         
Sbjct: 159 ACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGI--------RSLPASI-------- 202

Query: 872 YTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIE 931
                 + +L S L +  + L   + P I +L K++ L+L         P  F     ++
Sbjct: 203 ----ANLQNLKS-LKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLK 256

Query: 932 SLDLS-YNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPE 970
            L L   + L   +P  +  L  L    +       ++P 
Sbjct: 257 RLILKDCSNLL-TLPLDIHRLTQLEKLDLRGCVNLSRLPS 295

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  102 bits (256), Expect = 1e-23
 Identities = 54/318 (16%), Positives = 107/318 (33%), Gaps = 45/318 (14%)

Query: 95  SLFTPFQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILSSLARLSS 154
                  Q +     D +           R +  +N ++    G     +    L   + 
Sbjct: 27  PYHDVLSQWQRHYNADRNR-----WHSAWRQANSNNPQIETRTGRALK-ATADLLEDATQ 80

Query: 155 --LTSLDLSANRLKGSIDIKGPKRLSRLNNLKVFDLSGNLFNNSILSSLARLSSLRSLLL 212
               +L+L +  L        P +  RL++L+   +        +  ++ + + L +L L
Sbjct: 81  PGRVALELRSVPLP-QF----PDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTL 134

Query: 213 YDNRLEGSIDVKEFDSLSNLEELDMSYN--------EIDNFEVPQACSGLRKLSYLHLLR 264
             N L  ++      SL+ L EL +            + + +      GL  L  L L  
Sbjct: 135 ARNPLR-ALP-ASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEW 192

Query: 265 VGIRDGSKLLQSMGSFPSLNTLDLSYNNFTETVTTTTQGFP----HFKSLKELYMDDARI 320
            GIR    L  S+ +  +L +L +  +  +               H   L+EL +     
Sbjct: 193 TGIR---SLPASIANLQNLKSLKIRNSPLSA--------LGPAIHHLPKLEELDLRGCT- 240

Query: 321 ALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPW 380
               ++  I G     ++ L L +    +N  TL   +  L  L++L +        LP 
Sbjct: 241 -ALRNYPPIFG-GRAPLKRLILKDC---SNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPS 295

Query: 381 CLANMTSLRILDVSSNQL 398
            +A + +  I+ V  +  
Sbjct: 296 LIAQLPANCIILVPPHLQ 313

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  102 bits (256), Expect = 1e-23
 Identities = 58/359 (16%), Positives = 109/359 (30%), Gaps = 52/359 (14%)

Query: 376 GSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNH 435
           GS      + +    L    +  +          L+  +    +D       S     N 
Sbjct: 2   GSSHHHHHHSSGRENLYFQGSTALRPYHDV----LSQWQRHYNADR--NRWHSAWRQANS 55

Query: 436 SRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRL 495
           +  +I       + A        T P     +L L         FP   +    L+++ +
Sbjct: 56  NNPQIETRTGRALKATADLLEDATQPG--RVALELR--SVPLPQFPDQAFRLSHLQHMTI 111

Query: 496 SHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLP--IHSHKQLRLLDVSKNNFQGHI 553
               +  E P+ + +    L  L+L  + L     LP  I S  +LR L +        +
Sbjct: 112 DAAGL-MELPDTM-QQFAGLETLTLARNPLR---ALPASIASLNRLRELSIRACPELTEL 166

Query: 554 PLEIGDI--------LSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEH 605
           P  +           L  L    +    +  S+P+S  N+  L+ L + N+ L+  +   
Sbjct: 167 PEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPA 224

Query: 606 LAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLF 665
           +                          +L  L  L L G   +   P      + L+ L 
Sbjct: 225 IH-------------------------HLPKLEELDLRGCTALRNYPPIFGGRAPLKRLI 259

Query: 666 LSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLP 724
           L + S    +P  +  LT L  + +        +P    QL    I+ +  +  +    
Sbjct: 260 LKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQ 318

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 94.2 bits (235), Expect = 7e-21
 Identities = 50/335 (14%), Positives = 100/335 (29%), Gaps = 44/335 (13%)

Query: 128 LSNLKMLNLVGNLFNNSILSSLARLSSLTSLDLSANRLKGSIDIKGPKRLSRLNNLKVFD 187
            S  + L   G+         L++     + D +              R +  NN ++  
Sbjct: 11  SSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHS--------AWRQANSNNPQIET 62

Query: 188 LSGNLFNNSILSSLARLSS--LRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNF 245
            +G     +    L   +     +L L    L       +   LS+L+ + +    +   
Sbjct: 63  RTGRALK-ATADLLEDATQPGRVALELRSVPLP-QFP-DQAFRLSHLQHMTIDAAGLM-- 117

Query: 246 EVPQACSGLRKLSYLHLLRVGIRDGSKLL---QSMGSFPSLNTLDLSYNNFTETV----- 297
           E+P        L  L L        + L     S+ S   L  L +        +     
Sbjct: 118 ELPDTMQQFAGLETLTL------ARNPLRALPASIASLNRLRELSIRACPELTELPEPLA 171

Query: 298 -TTTTQGFPHFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQ 356
            T  +       +L+ L ++   I    S    I   + +++ L + N    +    L  
Sbjct: 172 STDASGEHQGLVNLQSLRLEWTGI---RSLPASIAN-LQNLKSLKIRN----SPLSALGP 223

Query: 357 GLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDL 416
            +  L  L+EL +       + P        L+ L +     + ++    +  LT +E L
Sbjct: 224 AIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLD-IHRLTQLEKL 282

Query: 417 ILSDNHF--QIPISLEPLFNHSRLKIFDAENNEIN 449
            L       ++P  +  L       I     +   
Sbjct: 283 DLRGCVNLSRLPSLIAQL---PANCIILVPPHLQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 59.2 bits (144), Expect = 2e-09
 Identities = 26/145 (17%), Positives = 45/145 (31%), Gaps = 13/145 (8%)

Query: 101 QQLESLDLRDNDIAGCVENEGL-ERLSRLSNLKMLNLVGNLFNNSILSSLARLSSLTSLD 159
             L+SL L    I        L   ++ L NLK L +  +  + ++  ++  L  L  LD
Sbjct: 183 VNLQSLRLEWTGI------RSLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELD 235

Query: 160 LSANRLKGSIDIKGPKRLSRLNNLKVFDLSGNLFNNSILSSLARLSSLRSLLLYDNRLEG 219
           L       +     P        LK   L       ++   + RL+ L  L L       
Sbjct: 236 LRGCTALRNY----PPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLS 291

Query: 220 SIDVKEFDSLSNLEELDMSYNEIDN 244
            +       L     + +  +    
Sbjct: 292 RLP-SLIAQLPANCIILVPPHLQAQ 315

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score =  110 bits (277), Expect = 3e-25
 Identities = 54/377 (14%), Positives = 119/377 (31%), Gaps = 45/377 (11%)

Query: 103 LESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILSSLARLSSLTSLDLSA 162
           +         I      + +      +     NL      +    +   L+S+  +  + 
Sbjct: 1   MGETITVSTPI------KQIFPDDAFAETIKDNLKKKSVTD--AVTQNELNSIDQIIANN 52

Query: 163 NRLKGSIDIKGPKRLSRLNNLKVFDLSGNLFNNSILSSLARLSSLRSLLLYDNRLEGSID 222
           + +K    ++G   +  L N+    L+GN    + +  L  L +L  L L +N+++   D
Sbjct: 53  SDIK---SVQG---IQYLPNVTKLFLNGN--KLTDIKPLTNLKNLGWLFLDENKIK---D 101

Query: 223 VKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGIRDGSKLLQSMGSFPS 282
           +     L  L+ L + +N I +         L +L  L+L    I D    +  +     
Sbjct: 102 LSSLKDLKKLKSLSLEHNGISDIN---GLVHLPQLESLYLGNNKITD----ITVLSRLTK 154

Query: 283 LNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSL 342
           L+TL L  N  ++              L+ LY+    I+ +   L      + ++  L L
Sbjct: 155 LDTLSLEDNQISD-----IVPLAGLTKLQNLYLSKNHIS-DLRAL----AGLKNLDVLEL 204

Query: 343 SNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSI 402
            +    N           LV    +   D  L    P  +++       +V  +      
Sbjct: 205 FSQECLNKPINH---QSNLVVPNTVKNTDGSLVT--PEIISDDGDYEKPNVKWHL----P 255

Query: 403 SSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPN 462
             +  +     + + +     +    +           +D +   I  ++     +T P 
Sbjct: 256 EFTNEVSFIFYQPVTIGKAKARFHGRVTQPLKEVYTVSYDVDGTVIKTKVEAGTRITAPK 315

Query: 463 FQLQSLLLSSGYRDGIT 479
              +   +  G+     
Sbjct: 316 PPTKQGYVFKGWYTEKN 332

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score =  105 bits (264), Expect = 1e-23
 Identities = 54/310 (17%), Positives = 120/310 (38%), Gaps = 33/310 (10%)

Query: 207 LRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVG 266
           +   +     ++    +   D+ +   + ++    + +       + L  +  +      
Sbjct: 1   MGETITVSTPIK---QIFPDDAFAETIKDNLKKKSVTDAV---TQNELNSIDQIIANNSD 54

Query: 267 IRDGSKLLQSMGSFPSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDARIALNTSF 326
           I+     +Q +   P++  L L+ N  T+      +   + K+L  L++D+ +I  + S 
Sbjct: 55  IKS----VQGIQYLPNVTKLFLNGNKLTDI-----KPLTNLKNLGWLFLDENKIK-DLSS 104

Query: 327 LQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMT 386
           L    + +  ++ LSL ++ +S+ +     GL  L  L+ L++ +N +       L+ +T
Sbjct: 105 L----KDLKKLKSLSLEHNGISDIN-----GLVHLPQLESLYLGNNKITDITV--LSRLT 153

Query: 387 SLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAENN 446
            L  L +  NQ I  I   PL  LT +++L LS NH      L  L     L + +  + 
Sbjct: 154 KLDTLSLEDNQ-ISDIV--PLAGLTKLQNLYLSKNHIS---DLRALAGLKNLDVLELFSQ 207

Query: 447 EINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPN 506
           E   + I   S       +++   S    + I+        +   ++     +++  F  
Sbjct: 208 ECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQ 267

Query: 507 WLLENNTKLR 516
            +     K R
Sbjct: 268 PVTIGKAKAR 277

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 93.2 bits (231), Expect = 1e-19
 Identities = 52/199 (26%), Positives = 80/199 (40%), Gaps = 24/199 (12%)

Query: 97  FTPFQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILSSLARLSSLT 156
                 +  L L  N +        ++ L+ L NL  L L  N      LSSL  L  L 
Sbjct: 61  IQYLPNVTKLFLNGNKL------TDIKPLTNLKNLGWLFLDEN--KIKDLSSLKDLKKLK 112

Query: 157 SLDLSANRLKGSIDIKGPKRLSRLNNLKVFDLSGNLFNNSILSSLARLSSLRSLLLYDNR 216
           SL L  N +    DI G   L  L  L+   L  N    + ++ L+RL+ L +L L DN+
Sbjct: 113 SLSLEHNGIS---DING---LVHLPQLESLYLGNN--KITDITVLSRLTKLDTLSLEDNQ 164

Query: 217 LEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGIRDGSKLLQS 276
           +    D+     L+ L+ L +S N I +     A +GL+ L  L L      +  K +  
Sbjct: 165 IS---DIVPLAGLTKLQNLYLSKNHISDLR---ALAGLKNLDVLELFSQECLN--KPINH 216

Query: 277 MGSFPSLNTLDLSYNNFTE 295
             +    NT+  +  +   
Sbjct: 217 QSNLVVPNTVKNTDGSLVT 235

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 91.3 bits (226), Expect = 6e-19
 Identities = 60/334 (17%), Positives = 113/334 (33%), Gaps = 27/334 (8%)

Query: 556 EIGDI-----LSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGC 610
            I  I      +     N+   ++  ++      +N +  +  +N+ +   + + +    
Sbjct: 10  PIKQIFPDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SV-QGIQ-YL 64

Query: 611 VSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNS 670
            ++  L L+ N L         NL NL WL L+ N  + ++  SL     L+ L L +N 
Sbjct: 65  PNVTKLFLNGNKLTD--IKPLTNLKNLGWLFLDENK-IKDL-SSLKDLKKLKSLSLEHNG 120

Query: 671 LSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFV 730
           +S  I   L +L  L  + +  N I     L   +L  L  L + DN IS  +       
Sbjct: 121 IS-DIN-GLVHLPQLESLYLGNNKITDITVLS--RLTKLDTLSLEDNQIS-DIVPLAGLT 175

Query: 731 CIEQVHLSKNMLHGQLKEGTFFNCLT-LMILDLSYNHLNGNIPDRVDGLSQLSYLILAHN 789
            ++ ++LSKN     + +      L  L +L+L          +    L   + +     
Sbjct: 176 KLQNLYLSKN----HISDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDG 231

Query: 790 NLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSS---LQPFETSFV 846
           +L     I      +   +          +   F       +          QP +  + 
Sbjct: 232 SLVTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKARFHGRVTQPLKEVYT 291

Query: 847 IMGGMDVDPKKQILESFDFTTKSITYTYQGRVPS 880
           +   +D    K  +E+    T     T QG V  
Sbjct: 292 VSYDVDGTVIKTKVEAGTRITAPKPPTKQGYVFK 325

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 72.8 bits (178), Expect = 3e-13
 Identities = 50/348 (14%), Positives = 91/348 (26%), Gaps = 67/348 (19%)

Query: 661 LQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNIS 720
           +      +  +    P             + K  +   +     +L  +  +  ++++I 
Sbjct: 1   MGETITVSTPIKQIFP--DDAFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIK 56

Query: 721 GSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLT-LMILDLSYNHLNGNIPDRVDGLS 779
            S+        + ++ L+ N    +L +      L  L  L L  N +  ++   +  L 
Sbjct: 57  -SVQGIQYLPNVTKLFLNGN----KLTDIKPLTNLKNLGWLFLDENKIK-DLSS-LKDLK 109

Query: 780 QLSYLILAHNN---LEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDN----TTLHERY 832
           +L  L L HN    + G     L  L QL+ L L NN +     +         TL    
Sbjct: 110 KLKSLSLEHNGISDING-----LVHLPQLESLYLGNNKIT--DITVLSRLTKLDTLSLED 162

Query: 833 NNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRL 892
           N  S + P                                       + L  L LS N  
Sbjct: 163 NQISDIVPLAGL-----------------------------------TKLQNLYLSKNH- 186

Query: 893 IGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKL----SWKIPYQL 948
           I  +   +  L  +  L L          +  SNL    ++  +   L            
Sbjct: 187 ISDLRA-LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDY 245

Query: 949 VELNTLAVFSVAYNNLSGKIPERAAQFATFNESSYEGNPFLCGPPLPI 996
            + N         N +S    +                  L       
Sbjct: 246 EKPNVKWHLPEFTNEVSFIFYQPVTIGKAKARFHGRVTQPLKEVYTVS 293

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 71.3 bits (174), Expect = 9e-13
 Identities = 42/226 (18%), Positives = 84/226 (37%), Gaps = 26/226 (11%)

Query: 509 LENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDI-----LSR 563
           ++    + +L L  + L      P+ + K L  L + +N         I D+     L +
Sbjct: 61  IQYLPNVTKLFLNGNKLTDIK--PLTNLKNLGWLFLDENK--------IKDLSSLKDLKK 110

Query: 564 LTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNL 623
           L   ++  N +  S  +   ++  L+ L L NN++T      L+     L +L+L +N +
Sbjct: 111 LKSLSLEHNGI--SDINGLVHLPQLESLYLGNNKIT--DITVLS-RLTKLDTLSLEDNQI 165

Query: 624 EGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLT 683
                     LT L  L L  NH + ++ ++L+   +L  L L +     K      NL 
Sbjct: 166 SD--IVPLAGLTKLQNLYLSKNH-ISDL-RALAGLKNLDVLELFSQECLNKPINHQSNLV 221

Query: 684 VLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDF 729
           V   +      +  P  +        +  ++  +    +    + F
Sbjct: 222 VPNTVKNTDGSLVTPEIISDDG--DYEKPNVKWHLPEFTNEVSFIF 265

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 66.3 bits (161), Expect = 4e-11
 Identities = 35/134 (26%), Positives = 56/134 (41%), Gaps = 14/134 (10%)

Query: 100 FQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILSSLARLSSLTSLD 159
             QLESL L +N I        +  LSRL+ L  L+L  N  ++  +  LA L+ L +L 
Sbjct: 130 LPQLESLYLGNNKI------TDITVLSRLTKLDTLSLEDNQISD--IVPLAGLTKLQNLY 181

Query: 160 LSANRLKGSIDIKGPKRLSRLNNLKVFDLSGNLFNNSILSSLARLSSLRSLLLYDNRLEG 219
           LS N +    D++    L+ L NL V +L      N  ++  + L    ++   D  L  
Sbjct: 182 LSKNHIS---DLRA---LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVT 235

Query: 220 SIDVKEFDSLSNLE 233
              + +        
Sbjct: 236 PEIISDDGDYEKPN 249

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  105 bits (265), Expect = 5e-25
 Identities = 58/265 (21%), Positives = 95/265 (35%), Gaps = 35/265 (13%)

Query: 559 DILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLT-GEIPEHLAMGCVSLRSLA 617
            I S  T   +  N L       F  +  L  L LS+N L+          G  SL+ L 
Sbjct: 25  GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLD 84

Query: 618 LSNNNLEGHMFSRNF-NLTNLIWLQLEGNHFVGEIPQSL-SKCSSLQGLFLSNNSLSGKI 675
           LS N +     S NF  L  L  L  + ++       S+     +L  L +S+       
Sbjct: 85  LSFNGVI--TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF 142

Query: 676 PRWLGNLTVLRHIIMPKN-HIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQ 734
                 L+ L  + M  N   E  +P  F +LR L  LD+S   +               
Sbjct: 143 NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-------------- 188

Query: 735 VHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRV-DGLSQLSYLILAHNNLEG 793
                     QL    F +  +L +L++S+N+   ++       L+ L  L  + N++  
Sbjct: 189 ----------QLSPTAFNSLSSLQVLNMSHNNFF-SLDTFPYKCLNSLQVLDYSLNHIM- 236

Query: 794 EVPIQLCR--LNQLQLLDLSNNNLH 816
               Q  +   + L  L+L+ N+  
Sbjct: 237 TSKKQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  103 bits (258), Expect = 4e-24
 Identities = 60/246 (24%), Positives = 90/246 (36%), Gaps = 19/246 (7%)

Query: 589 QFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNN---LEGHMFSRNFNLTNLIWLQLEGN 645
             +  ++  LT  +P  +     S   L L +N    L   +F     LT L  L L  N
Sbjct: 10  TEIRCNSKGLT-SVPTGIP---SSATRLELESNKLQSLPHGVFD---KLTQLTKLSLSSN 62

Query: 646 H--FVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLE- 702
              F G   QS    +SL+ L LS N +   +      L  L H+    ++++       
Sbjct: 63  GLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSV 121

Query: 703 FCQLRILQILDISDNNISGSLPS--CYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMIL 760
           F  LR L  LDIS  +      +        +E + ++ N          F     L  L
Sbjct: 122 FLSLRNLIYLDISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL 180

Query: 761 DLSYNHLNGNIPDRV-DGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHI 819
           DLS   L   +     + LS L  L ++HNN           LN LQ+LD S N++    
Sbjct: 181 DLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSK 239

Query: 820 PSCFDN 825
                +
Sbjct: 240 KQELQH 245

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 99.3 bits (248), Expect = 1e-22
 Identities = 54/230 (23%), Positives = 84/230 (36%), Gaps = 19/230 (8%)

Query: 92  LNASLFTPFQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILSSLAR 151
           L   +F    QL  L L  N ++   +    +     ++LK L+L  N    ++ S+   
Sbjct: 43  LPHGVFDKLTQLTKLSLSSNGLS--FKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLG 99

Query: 152 LSSLTSLDLSANRLKGSIDIKGPKRLSRLNNLKVFDLSGNLFNNSILSSLARLSSLRSLL 211
           L  L  LD   + LK  +          L NL   D+S      +       LSSL  L 
Sbjct: 100 LEQLEHLDFQHSNLK-QMSEFSV--FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLK 156

Query: 212 LYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGIRDGS 271
           +  N  + +     F  L NL  LD+S  +++    P A + L  L  L++        +
Sbjct: 157 MAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLS-PTAFNSLSSLQVLNM------SHN 209

Query: 272 KLLQ-SMGSF---PSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDD 317
                    +    SL  LD S N+   +     Q FP   SL  L +  
Sbjct: 210 NFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFP--SSLAFLNLTQ 257

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 88.1 bits (219), Expect = 5e-19
 Identities = 57/293 (19%), Positives = 100/293 (34%), Gaps = 66/293 (22%)

Query: 656 SKCS-SLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDI 714
           S+CS S   +  ++  L+  +P  +   +    + +  N ++      F +L  L  L +
Sbjct: 3   SRCSCSGTEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSL 59

Query: 715 SDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDR 774
           S N +S                             + F   +L  LDLS+N +   +   
Sbjct: 60  SSNGLS----------------------FKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSN 96

Query: 775 VDGLSQLSYLILAHNNLEGEVPIQLCR-LNQLQLLDLSNNNLHGHIPSCFDN----TTLH 829
             GL QL +L   H+NL+      +   L  L  LD+S+ +        F+       L 
Sbjct: 97  FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLK 156

Query: 830 ERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSC 889
              N+       +                    F                  L+ LDLS 
Sbjct: 157 MAGNSFQENFLPDI-------------------FTELRN-------------LTFLDLSQ 184

Query: 890 NRLIGHIPPQI-GNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLS 941
            + +  + P    +L+ +Q LN+SHNN        +  L +++ LD S N + 
Sbjct: 185 CQ-LEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM 236

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 86.6 bits (215), Expect = 2e-18
 Identities = 54/276 (19%), Positives = 93/276 (33%), Gaps = 52/276 (18%)

Query: 732 IEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLN-GNIPDRV-DGLSQLSYLILAHN 789
             ++ L  N L   L  G F     L  L LS N L+      +   G + L YL L+ N
Sbjct: 30  ATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN 88

Query: 790 NLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSC--FDN----TTLHERYNNGSSLQPFET 843
            +   +      L QL+ LD  ++NL   +     F +      L   + +         
Sbjct: 89  GVI-TMSSNFLGLEQLEHLDFQHSNLK-QMSEFSVFLSLRNLIYLDISHTHTRVAFN--- 143

Query: 844 SFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQI-GN 902
                              F+  +              L  L ++ N    +  P I   
Sbjct: 144 -----------------GIFNGLSS-------------LEVLKMAGNSFQENFLPDIFTE 173

Query: 903 LTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYN 962
           L  +  L+LS   L    P+ F++L +++ L++S+N       +    LN+L V   + N
Sbjct: 174 LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN 233

Query: 963 NLSGKIPERAAQFATFNES----SYEGNPFLCGPPL 994
           ++     ++      F  S    +   N F C    
Sbjct: 234 HIM-TSKKQE--LQHFPSSLAFLNLTQNDFACTCEH 266

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 84.7 bits (210), Expect = 8e-18
 Identities = 57/324 (17%), Positives = 106/324 (32%), Gaps = 76/324 (23%)

Query: 205 SSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEV-PQACSGLRKLSYLHLL 263
           SS   L L  N+L+ S+    FD L+ L +L +S N +       Q+  G          
Sbjct: 28  SSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGT--------- 77

Query: 264 RVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDARIALN 323
                             SL  LDLS+N     V T +  F   + L+ L    + +   
Sbjct: 78  -----------------TSLKYLDLSFNG----VITMSSNFLGLEQLEHLDFQHSNL--- 113

Query: 324 TSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLA 383
                             +S  SV             L +L  L ++    R +      
Sbjct: 114 ----------------KQMSEFSV----------FLSLRNLIYLDISHTHTRVAFNGIFN 147

Query: 384 NMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDA 443
            ++SL +L ++ N    +        L ++  L LS    +  +S     + S L++ + 
Sbjct: 148 GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ-LSPTAFNSLSSLQVLNM 206

Query: 444 ENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMN-- 501
            +N   +  +++         LQ L  S  +       +  +    L ++ L+    N  
Sbjct: 207 SHNNFFS--LDTFPY-KCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQ---NDF 260

Query: 502 ------EEFPNWLLENNTKLRQLS 519
                 + F  W+ +    L ++ 
Sbjct: 261 ACTCEHQSFLQWIKDQRQLLVEVE 284

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 73.5 bits (181), Expect = 4e-14
 Identities = 40/220 (18%), Positives = 76/220 (34%), Gaps = 13/220 (5%)

Query: 481 PKFLYNQHDLEYVRLSHIKMNE-EFPNWLLENNTKLRQLSLVNDSLVGPFRLP--IHSHK 537
                    L  + LS   ++     +      T L+ L L  + ++    +       +
Sbjct: 45  HGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI---TMSSNFLGLE 101

Query: 538 QLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQ 597
           QL  LD   +N +      +   L  L   +IS      +    F  ++ L+ L ++ N 
Sbjct: 102 QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS 161

Query: 598 LTGEIPEHLAMGCVSLRSLALSNNNL---EGHMFSRNFNLTNLIWLQLEGNHFVGEIPQS 654
                   +     +L  L LS   L       F+   +L++L  L +  N+F       
Sbjct: 162 FQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN---SLSSLQVLNMSHNNFFSLDTFP 218

Query: 655 LSKCSSLQGLFLSNNSLSGKIPRWLGNL-TVLRHIIMPKN 693
               +SLQ L  S N +     + L +  + L  + + +N
Sbjct: 219 YKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 258

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 53.5 bits (129), Expect = 1e-07
 Identities = 36/222 (16%), Positives = 67/222 (30%), Gaps = 48/222 (21%)

Query: 760 LDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNL-HGH 818
           +  +   L  ++P  +   S  + L L  N L+        +L QL  L LS+N L    
Sbjct: 12  IRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKG 68

Query: 819 IPS-CFDN----TTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYT 873
             S           L   +N   ++                       +F    +     
Sbjct: 69  CCSQSDFGTTSLKYLDLSFNGVITMS---------------------SNFLGLEQ----- 102

Query: 874 YQGRVPSLLSGLDLSCNRLIGHIPPQ--IGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIE 931
                   L  LD   +  +  +       +L  +  L++SH +        F+ L ++E
Sbjct: 103 --------LEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLE 153

Query: 932 SLDLSYNKLSWKIPYQ-LVELNTLAVFSVAYNNLSGKIPERA 972
            L ++ N            EL  L    ++   L  ++   A
Sbjct: 154 VLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTA 194

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 52.7 bits (127), Expect = 3e-07
 Identities = 34/128 (26%), Positives = 46/128 (35%), Gaps = 8/128 (6%)

Query: 91  YLNASLFTPFQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILSSLA 150
                +F     LE L +  N        +     + L NL  L+L          ++  
Sbjct: 140 VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIF---TELRNLTFLDLSQCQLEQLSPTAFN 196

Query: 151 RLSSLTSLDLSANRLKGSIDIKGPKRLSRLNNLKVFDLSGNLFNNSILSSLARL-SSLRS 209
            LSSL  L++S N    S+D         LN+L+V D S N    S    L    SSL  
Sbjct: 197 SLSSLQVLNMSHNNFF-SLD---TFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAF 252

Query: 210 LLLYDNRL 217
           L L  N  
Sbjct: 253 LNLTQNDF 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 45.4 bits (108), Expect = 6e-05
 Identities = 21/86 (24%), Positives = 33/86 (38%), Gaps = 5/86 (5%)

Query: 883 SGLDLSCNRL-IGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLS 941
           SG ++ CN   +  +P  I   +    L L  N L       F  L  +  L LS N LS
Sbjct: 8   SGTEIRCNSKGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLS 65

Query: 942 WK--IPYQLVELNTLAVFSVAYNNLS 965
           +K           +L    +++N + 
Sbjct: 66  FKGCCSQSDFGTTSLKYLDLSFNGVI 91

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  105 bits (265), Expect = 7e-25
 Identities = 54/291 (18%), Positives = 100/291 (34%), Gaps = 30/291 (10%)

Query: 538 QLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQ 597
            LR++  S    +  +P    D+     + ++  N +       F N+  L  L L NN+
Sbjct: 32  HLRVVQCSDLGLE-KVP---KDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNK 87

Query: 598 LTGEIPEHLAMGCVSLRSLALSNNNLE---GHMFSRNFNLTNLIWLQLEGNHFVGEIPQS 654
           ++ +I        V L  L LS N L+     M         L  L++  N         
Sbjct: 88  IS-KISPGAFAPLVKLERLYLSKNQLKELPEKMPK------TLQELRVHENEITKVRKSV 140

Query: 655 LSKCSSLQGLFLSNNSLSGKI--PRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQIL 712
            +  + +  + L  N L            +  L +I +   +I   IP        L  L
Sbjct: 141 FNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGL--PPSLTEL 197

Query: 713 DISDNNISGSLPSCY--DFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGN 770
            +  N I+  + +        + ++ LS N +   +  G+  N   L  L L+ N L   
Sbjct: 198 HLDGNKIT-KVDAASLKGLNNLAKLGLSFNSIS-AVDNGSLANTPHLRELHLNNNKLV-K 254

Query: 771 IPDRVDGLSQLSYLILAHNNLEG------EVPIQLCRLNQLQLLDLSNNNL 815
           +P  +     +  + L +NN+          P    +      + L +N +
Sbjct: 255 VPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV 305

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  104 bits (261), Expect = 3e-24
 Identities = 68/366 (18%), Positives = 111/366 (30%), Gaps = 80/366 (21%)

Query: 587 FLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNN---LEGHMFSRNFNLTNLIWLQLE 643
            L+ +  S+  L  ++P+ L         L L NN    ++   F    NL NL  L L 
Sbjct: 32  HLRVVQCSDLGLE-KVPKDLP---PDTALLDLQNNKITEIKDGDFK---NLKNLHTLILI 84

Query: 644 GNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEF 703
            N      P + +    L+ L+LS N L     +    L  LR   + +N I       F
Sbjct: 85  NNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELR---VHENEITKVRKSVF 141

Query: 704 CQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLS 763
             L  + ++++  N +  S                       ++ G F     L  + ++
Sbjct: 142 NGLNQMIVVELGTNPLKSS----------------------GIENGAFQGMKKLSYIRIA 179

Query: 764 YNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCF 823
             ++   IP  +     L+ L L  N +       L  LN L  L LS N++        
Sbjct: 180 DTNIT-TIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSL 236

Query: 824 DN-TTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLL 882
            N   L E + N + L                                           +
Sbjct: 237 ANTPHLRELHLNNNKLVKVPGGLADH-------------------------------KYI 265

Query: 883 SGLDLSCNRLIGHIPPQ-------IGNLTKIQTLNLSHNNL-AGPI-PSTFSNLRNIESL 933
             + L  N  I  I                   ++L  N +    I PSTF  +    ++
Sbjct: 266 QVVYLHNNN-ISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAV 324

Query: 934 DLSYNK 939
            L   K
Sbjct: 325 QLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 98.9 bits (247), Expect = 2e-22
 Identities = 60/309 (19%), Positives = 114/309 (36%), Gaps = 55/309 (17%)

Query: 650 EIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRIL 709
           ++P+ L        L L NN ++        NL  L  +I+  N I    P  F  L  L
Sbjct: 45  KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKL 102

Query: 710 QILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHL-N 768
           + L +S N +   LP       ++++ + +N +  ++++  F     +++++L  N L +
Sbjct: 103 ERLYLSKNQLK-ELPE-KMPKTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKS 159

Query: 769 GNIPDRV-DGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDN-- 825
             I +    G+ +LSY+ +A  N+   +P  L     L  L L  N +     +      
Sbjct: 160 SGIENGAFQGMKKLSYIRIADTNIT-TIPQGL--PPSLTELHLDGNKITKVDAASLKGLN 216

Query: 826 --TTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLS 883
               L   +N+ S++                       S   T               L 
Sbjct: 217 NLAKLGLSFNSISAVDN--------------------GSLANTPH-------------LR 243

Query: 884 GLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNL------AGPIPSTFSNLRNIESLDLSY 937
            L L+ N+L+  +P  + +   IQ + L +NN+          P   +   +   + L  
Sbjct: 244 ELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFS 302

Query: 938 NKLS-WKIP 945
           N +  W+I 
Sbjct: 303 NPVQYWEIQ 311

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 90.8 bits (226), Expect = 8e-20
 Identities = 53/322 (16%), Positives = 97/322 (30%), Gaps = 63/322 (19%)

Query: 62  CQWERVSCN---------NTMGRVVVLDLSQTHRGEYWYLNASLFTPFQQLESLDLRDND 112
           C    V C+         +      +LDL      E   +    F   + L +L L +N 
Sbjct: 31  CHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITE---IKDGDFKNLKNLHTLILINNK 87

Query: 113 IAGCVENEGLERLSRLSNLKMLNLVGN-----------------LFNNSILS----SLAR 151
           I+           + L  L+ L L  N                 +  N I          
Sbjct: 88  ISKISPGA----FAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNG 143

Query: 152 LSSLTSLDLSANRLKGSIDIKGPKRLSRLNNLKVFDLSGNLFNNSILSSLAR--LSSLRS 209
           L+ +  ++L  N LK S  I+       +  L    ++        ++++ +    SL  
Sbjct: 144 LNQMIVVELGTNPLK-SSGIE-NGAFQGMKKLSYIRIADTN-----ITTIPQGLPPSLTE 196

Query: 210 LLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGIRD 269
           L L  N++   +D      L+NL +L +S+N I   +   + +    L  LHL    +  
Sbjct: 197 LHLDGNKIT-KVDAASLKGLNNLAKLGLSFNSISAVD-NGSLANTPHLRELHLNNNKLVK 254

Query: 270 GSKLLQSMGSFPSLNTLDLSYNNFTE---TVTTTTQGFPHFKSLKELYMDDARIALNT-- 324
               L        +  + L  NN +                 S   + +    +      
Sbjct: 255 VPGGLADH---KYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQ 311

Query: 325 --SFLQIIGESMPSIQYLSLSN 344
             +F       +     + L N
Sbjct: 312 PSTF-----RCVYVRAAVQLGN 328

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 89.3 bits (222), Expect = 3e-19
 Identities = 60/352 (17%), Positives = 120/352 (34%), Gaps = 83/352 (23%)

Query: 129 SNLKMLNLVGNLFNNSILSSLARLSSLTSLDLSANRLKGSIDIKGPKRLSRLNNLKVFDL 188
            +  +L+L  N            L +L +L L  N++   I    P   + L  L+   L
Sbjct: 52  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS-KIS---PGAFAPLVKLERLYL 107

Query: 189 SGNLFNNSILSSLAR--LSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFE 246
           S N      L  L      +L+ L +++N +   +    F+ L+ +  +++  N + +  
Sbjct: 108 SKNQ-----LKELPEKMPKTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSG 161

Query: 247 VP-QACSGLRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTETVTTTTQGFP 305
           +   A  G++KLSY+                           ++  N T T+        
Sbjct: 162 IENGAFQGMKKLSYI--------------------------RIADTNIT-TIPQGL---- 190

Query: 306 HFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQ 365
              SL EL++D  +I                +   SL                  L +L 
Sbjct: 191 -PPSLTELHLDGNKIT--------------KVDAASLKG----------------LNNLA 219

Query: 366 ELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQ- 424
           +L ++ N +       LAN   LR L +++N+L+  +    L     I+ + L +N+   
Sbjct: 220 KLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGG-LADHKYIQVVYLHNNNISA 277

Query: 425 IPIS----LEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSS 472
           I  +           +        +N +    I+  +     +   ++ L +
Sbjct: 278 IGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTF-RCVYVRAAVQLGN 328

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 83.5 bits (207), Expect = 2e-17
 Identities = 56/240 (23%), Positives = 93/240 (38%), Gaps = 23/240 (9%)

Query: 732 IEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRV-DGLSQLSYLILAHNN 790
              + L  N +  ++K+G F N   L  L L  N ++  I       L +L  L L+ N 
Sbjct: 54  TALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKIS-KISPGAFAPLVKLERLYLSKNQ 111

Query: 791 LEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDN----TTLHERYNNGSSLQPFETSFV 846
           L+ E+P ++     LQ L +  N +     S F+       +    N   S      +F 
Sbjct: 112 LK-ELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQ 168

Query: 847 IMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQI-GNLTK 905
            M           L        +IT      +P  L+ L L  N+ I  +       L  
Sbjct: 169 GMKK---------LSYIRIADTNITTI-PQGLPPSLTELHLDGNK-ITKVDAASLKGLNN 217

Query: 906 IQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLS 965
           +  L LS N+++     + +N  ++  L L+ NKL  K+P  L +   + V  +  NN+S
Sbjct: 218 LAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS 276

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 78.5 bits (194), Expect = 1e-15
 Identities = 64/347 (18%), Positives = 117/347 (33%), Gaps = 73/347 (21%)

Query: 280 FPSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDARIALNTSFLQIIGESMPSIQY 339
            P    LDL  N  TE        F + K+L  L + + +I   +         +  ++ 
Sbjct: 51  PPDTALLDLQNNKITEI---KDGDFKNLKNLHTLILINNKI---SKISPGAFAPLVKLER 104

Query: 340 LSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQL- 398
           L LS     N  + L + +     LQEL + +N++          +  + ++++ +N L 
Sbjct: 105 LYLSK----NQLKELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLK 158

Query: 399 IGSISSSPLIHLTSIEDLILSDNHFQ-IPISLEPLFNHSRLKIFDAENNEINAEIIESHS 457
              I +     +  +  + ++D +   IP  L        L     + N+I    +++ S
Sbjct: 159 SSGIENGAFQGMKKLSYIRIADTNITTIPQGL---P--PSLTELHLDGNKI--TKVDAAS 211

Query: 458 LTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQ 517
           L      L  L LS             +N        +S +       N  L N   LR+
Sbjct: 212 LK-GLNNLAKLGLS-------------FNS-------ISAV------DNGSLANTPHLRE 244

Query: 518 LSLVNDSLVGPFRLP--IHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALD 575
           L L N+ LV   ++P  +  HK ++++ +  NN                    I  N   
Sbjct: 245 LHLNNNKLV---KVPGGLADHKYIQVVYLHNNNIS-----------------AIGSNDFC 284

Query: 576 GSIPSSFGNMNFLQFLDLSNNQLT-GEIPEHLAMGCVSLRSLALSNN 621
              P           + L +N +   EI            ++ L N 
Sbjct: 285 P--PGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 65.8 bits (161), Expect = 2e-11
 Identities = 30/148 (20%), Positives = 48/148 (32%), Gaps = 16/148 (10%)

Query: 100 FQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILSSLARLSSLTSLD 159
              L  L L  N I           L  L+NL  L L  N  +     SLA    L  L 
Sbjct: 191 PPSLTELHLDGNKI----TKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELH 246

Query: 160 LSANRLKGSIDIKGPKRLSRLNNLKVFDLSGNLFNN------SILSSLARLSSLRSLLLY 213
           L+ N+L   +    P  L+    ++V  L  N  +              + +S   + L+
Sbjct: 247 LNNNKLV-KV----PGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLF 301

Query: 214 DNRLE-GSIDVKEFDSLSNLEELDMSYN 240
            N ++   I    F  +     + +   
Sbjct: 302 SNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 56.5 bits (137), Expect = 2e-08
 Identities = 24/129 (18%), Positives = 46/129 (35%), Gaps = 9/129 (6%)

Query: 92  LNASLFTPFQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILSSLAR 151
           ++A+       L  L L  N I+  V+N  L   +   +L+ L+L  N     +   LA 
Sbjct: 207 VDAASLKGLNNLAKLGLSFNSIS-AVDNGSL---ANTPHLRELHLNNNKLV-KVPGGLAD 261

Query: 152 LSSLTSLDLSANRLK--GSIDIKGPKRLSRLNNLKVFDLSGNLFNNSILSSLA--RLSSL 207
              +  + L  N +   GS D   P   ++  +     L  N      +       +   
Sbjct: 262 HKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVR 321

Query: 208 RSLLLYDNR 216
            ++ L + +
Sbjct: 322 AAVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 51.9 bits (125), Expect = 5e-07
 Identities = 28/96 (29%), Positives = 46/96 (47%), Gaps = 6/96 (6%)

Query: 878 VPSLLSGLDLSCNRLIGHIPP-QIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLS 936
           +P   + LDL  N+ I  I      NL  + TL L +N ++   P  F+ L  +E L LS
Sbjct: 50  LPPDTALLDLQNNK-ITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108

Query: 937 YNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERA 972
            N+L  ++P ++    TL    V  N ++ K+ +  
Sbjct: 109 KNQLK-ELPEKM--PKTLQELRVHENEIT-KVRKSV 140

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 44.6 bits (106), Expect = 1e-04
 Identities = 38/174 (21%), Positives = 56/174 (32%), Gaps = 43/174 (24%)

Query: 805 LQLLDLSNNNLHGHIPSCFDN----TTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQIL 860
             LLDL NN +       F N     TL    N  S + P                    
Sbjct: 54  TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISP-------------------- 93

Query: 861 ESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPI 920
            +F    K             L  L LS N+L   +P        +Q L +  N +    
Sbjct: 94  GAFAPLVK-------------LERLYLSKNQL-KELPE--KMPKTLQELRVHENEITKVR 137

Query: 921 PSTFSNLRNIESLDLSYNKL-SWKIPYQ-LVELNTLAVFSVAYNNLSGKIPERA 972
            S F+ L  +  ++L  N L S  I       +  L+   +A  N++  IP+  
Sbjct: 138 KSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGL 190

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score =  104 bits (262), Expect = 2e-24
 Identities = 59/282 (20%), Positives = 102/282 (36%), Gaps = 29/282 (10%)

Query: 153 SSLTSLDLSANRLKGSIDIKGPKRLSRLNNLKVFDLSGNLFNNSILSSLARLSSLRSLLL 212
            ++ SLDLS NR+   I       L R  NL+   L+ N  N     S + L SL  L L
Sbjct: 52  EAVKSLDLSNNRIT-YIS---NSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDL 107

Query: 213 YDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGIRDGSK 272
             N L  ++    F  LS+L  L++  N           S L KL  L +          
Sbjct: 108 SYNYLS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGN------MD 160

Query: 273 LLQSM--GSF---PSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDARIALNTSFL 327
               +    F     L  L++  ++       +       +++  L +   +       L
Sbjct: 161 TFTKIQRKDFAGLTFLEELEIDASDLQSYEPKS---LKSIQNVSHLILHMKQH---ILLL 214

Query: 328 QIIGESMPSIQYLSLSNSSVSNNSRT-----LDQGLCPLVHLQELHMADNDLRGSLPWCL 382
           +I  +   S++ L L ++ +     +         L      + + + D  L   +   L
Sbjct: 215 EIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLL 273

Query: 383 ANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQ 424
             ++ L  L+ S NQL  S+       LTS++ + L  N + 
Sbjct: 274 NQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score =  102 bits (255), Expect = 2e-23
 Identities = 53/284 (18%), Positives = 105/284 (36%), Gaps = 29/284 (10%)

Query: 539 LRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPS-SFGNMNFLQFLDLSNNQ 597
           ++ LD+S N    +I          L    ++ N ++ +I   SF ++  L+ LDLS N 
Sbjct: 54  VKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYNY 111

Query: 598 LTGEIPEHLAMGCVSLRSLALSNNNL----EGHMFSRNFNLTNLIWLQLEGNHFVGEIP- 652
           L+  +         SL  L L  N      E  +FS   +LT L  L++       +I  
Sbjct: 112 LS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFS---HLTKLQILRVGNMDTFTKIQR 167

Query: 653 QSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQIL 712
           +  +  + L+ L +  + L    P+ L ++  + H+I+        + +       ++ L
Sbjct: 168 KDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECL 227

Query: 713 DISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIP 772
           ++ D ++                    + L    +  +     T   + ++   L   + 
Sbjct: 228 ELRDTDLD---------------TFHFSELS-TGETNSLIKKFTFRNVKITDESLF-QVM 270

Query: 773 DRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLH 816
             ++ +S L  L  + N L+        RL  LQ + L  N   
Sbjct: 271 KLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 95.2 bits (237), Expect = 5e-21
 Identities = 65/279 (23%), Positives = 118/279 (42%), Gaps = 30/279 (10%)

Query: 103 LESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILSSLARLSSLTSLDLSA 162
           ++SLDL +N I     ++    L R  NL+ L L  N  N     S + L SL  LDLS 
Sbjct: 54  VKSLDLSNNRITYISNSD----LQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSY 109

Query: 163 NRLKGSIDIKGPKRLSRLNNLKVFDLSGNLFNN-SILSSLARLSSLRSLLLYDNRLEGSI 221
           N L  ++          L++L   +L GN +      S  + L+ L+ L + +      I
Sbjct: 110 NYLS-NLS---SSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKI 165

Query: 222 DVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHL-------LRVGIRDGSKLL 274
             K+F  L+ LEEL++  +++ ++E P++   ++ +S+L L       L     D +  +
Sbjct: 166 QRKDFAGLTFLEELEIDASDLQSYE-PKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSV 224

Query: 275 QSMGSFPSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDARIALNTSFLQIIGESM 334
           + +     L   DL   +F+E  T  T       + + + + D  +      L      +
Sbjct: 225 ECL----ELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLN----QI 276

Query: 335 PSIQYLSLSNSSVSNNSRTLDQGLC-PLVHLQELHMADN 372
             +  L  S     N  +++  G+   L  LQ++ +  N
Sbjct: 277 SGLLELEFSR----NQLKSVPDGIFDRLTSLQKIWLHTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 86.7 bits (215), Expect = 3e-18
 Identities = 52/301 (17%), Positives = 101/301 (33%), Gaps = 44/301 (14%)

Query: 651 IPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQ 710
           IP  L+   +++ L LSNN ++      L     L+ +++  N I       F  L  L+
Sbjct: 46  IPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLE 103

Query: 711 ILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGN 770
            LD+S N +S +L S                         F    +L  L+L  N     
Sbjct: 104 HLDLSYNYLS-NLSS-----------------------SWFKPLSSLTFLNLLGNPYKTL 139

Query: 771 IPDRV-DGLSQLSYLILAHNNLEGEVPIQ-LCRLNQLQLLDLSNNNLHGHIPSCFDN--- 825
               +   L++L  L + + +   ++  +    L  L+ L++  ++L  + P    +   
Sbjct: 140 GETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQN 199

Query: 826 -TTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSL--- 881
            + L         L        +   +    +   L   D  T   +    G   SL   
Sbjct: 200 VSHLILHMKQHILLLE--IFVDVTSSV----ECLELRDTDLDTFHFSELSTGETNSLIKK 253

Query: 882 --LSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNK 939
                + ++   L   +   +  ++ +  L  S N L       F  L +++ + L  N 
Sbjct: 254 FTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNP 312

Query: 940 L 940
            
Sbjct: 313 W 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 73.6 bits (181), Expect = 6e-14
 Identities = 49/280 (17%), Positives = 92/280 (32%), Gaps = 57/280 (20%)

Query: 205 SSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLR 264
            +++SL L +NR+   I   +     NL+ L ++ N I+  E   + S L  L +L L  
Sbjct: 52  EAVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGINTIE-EDSFSSLGSLEHLDL-- 107

Query: 265 VGIRDGSKLLQSM--GSF---PSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDAR 319
                    L ++    F    SL  L+L  N +     T+   F H   L+ L + +  
Sbjct: 108 -----SYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSL--FSHLTKLQILRVGN-- 158

Query: 320 IALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLP 379
                         M +   +               +    L  L+EL +  +DL+   P
Sbjct: 159 --------------MDTFTKIQ-------------RKDFAGLTFLEELEIDASDLQSYEP 191

Query: 380 WCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQI-------PISLEPL 432
             L ++ ++  L +   Q    +    +   +S+E L L D                  L
Sbjct: 192 KSLKSIQNVSHLILHMKQ-HILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSL 250

Query: 433 FNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSS 472
                 +     +  +   +   + ++     L  L  S 
Sbjct: 251 IKKFTFRNVKITDESLFQVMKLLNQIS----GLLELEFSR 286

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 71.7 bits (176), Expect = 3e-13
 Identities = 58/314 (18%), Positives = 108/314 (34%), Gaps = 70/314 (22%)

Query: 386 TSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAEN 445
            +++ LD+S+N+ I  IS+S L    +++ L+L+ N      ++E          F    
Sbjct: 52  EAVKSLDLSNNR-ITYISNSDLQRCVNLQALVLTSNGIN---TIEE-------DSFS--- 97

Query: 446 NEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFP 505
                      SL      L+ L LS              N        LS++       
Sbjct: 98  -----------SLG----SLEHLDLSY-------------NY-------LSNL------S 116

Query: 506 NWLLENNTKLRQLSLVNDSL--VGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSR 563
           +   +  + L  L+L+ +    +G   L      +L++L V   +    I  +    L+ 
Sbjct: 117 SSWFKPLSSLTFLNLLGNPYKTLGETSLF-SHLTKLQILRVGNMDTFTKIQRKDFAGLTF 175

Query: 564 LTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNL 623
           L    I  + L    P S  ++  +  L L   Q    + E       S+  L L + +L
Sbjct: 176 LEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDL 234

Query: 624 EGH--------MFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKI 675
           +            +          +++       ++ + L++ S L  L  S N L   +
Sbjct: 235 DTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLKS-V 292

Query: 676 PRW-LGNLTVLRHI 688
           P      LT L+ I
Sbjct: 293 PDGIFDRLTSLQKI 306

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 71.7 bits (176), Expect = 3e-13
 Identities = 43/215 (20%), Positives = 78/215 (36%), Gaps = 27/215 (12%)

Query: 92  LNASLFTPFQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILSSL-- 149
           L++S F P   L  L+L  N      E      L++L  L++        N    + +  
Sbjct: 115 LSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVG-------NMDTFTKIQR 167

Query: 150 ---ARLSSLTSLDLSANRLKGSIDIKGPKRLSRLNNLKVFDLSGNLFNNSILSSLARLSS 206
              A L+ L  L++ A+ L+ S +   PK L  + N+    L        +   +   SS
Sbjct: 168 KDFAGLTFLEELEIDASDLQ-SYE---PKSLKSIQNVSHLILHMKQHILLLEIFVDVTSS 223

Query: 207 LRSLLLYDNRLEG----SIDVKEFDSLSN---LEELDMSYNEIDNFEVPQACSGLRKLSY 259
           +  L L D  L+      +   E +SL        + ++   +  F+V +  + +  L  
Sbjct: 224 VECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESL--FQVMKLLNQISGLLE 281

Query: 260 LHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFT 294
           L   R  ++             SL  + L  N + 
Sbjct: 282 LEFSRNQLKSVPD--GIFDRLTSLQKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 70.1 bits (172), Expect = 9e-13
 Identities = 45/255 (17%), Positives = 75/255 (29%), Gaps = 51/255 (20%)

Query: 756 TLMILDLSYNHLNGNIPDRV-DGLSQLSYLILAHNNLEGEVPIQL-CRLNQLQLLDLSNN 813
            +  LDLS N +   I +        L  L+L  N +   +       L  L+ LDLS N
Sbjct: 53  AVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYN 110

Query: 814 NLHGHIPSCFDN----TTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKS 869
            L     S F      T L+   N   +L                        F   TK 
Sbjct: 111 YLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSL-------------------FSHLTK- 150

Query: 870 ITYTYQGRVPSLLSGLDLSCNRLIGHIPPQI-GNLTKIQTLNLSHNNLAGPIPSTFSNLR 928
                       L  L +        I  +    LT ++ L +  ++L    P +  +++
Sbjct: 151 ------------LQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQ 198

Query: 929 NIESLDLSYNKLSWKIPY---------QLVELNTLAVFSVAYNNLSGKIPERAAQFATFN 979
           N+  L L   +    +           + +EL    + +  ++ LS        +  TF 
Sbjct: 199 NVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFR 257

Query: 980 ESSYEGNPFLCGPPL 994
                         L
Sbjct: 258 NVKITDESLFQVMKL 272

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 64.8 bits (158), Expect = 4e-11
 Identities = 60/352 (17%), Positives = 107/352 (30%), Gaps = 93/352 (26%)

Query: 278 GSFPSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDARIALNTSFLQIIGE----S 333
           G   ++ +LDLS N  T    +         +L+ L        L ++ +  I E    S
Sbjct: 49  GLTEAVKSLDLSNNRITYISNSD---LQRCVNLQALV-------LTSNGINTIEEDSFSS 98

Query: 334 MPSIQYLSLSNSSVSNNSRTLDQGL-CPLVHLQELHMADNDLRGSLPW-CLANMTSLRIL 391
           + S+++L LS     N    L      PL  L  L++  N  +        +++T L+IL
Sbjct: 99  LGSLEHLDLSY----NYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQIL 154

Query: 392 DVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAE 451
            V +      I       LT +E+L +  +  Q   S EP       K            
Sbjct: 155 RVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQ---SYEP-------KSLK--------- 195

Query: 452 IIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLEN 511
                S+      +  L+L                Q          +          ++ 
Sbjct: 196 -----SIQ----NVSHLILH-------------MKQ-------HILL------LEIFVDV 220

Query: 512 NTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISM 571
            + +  L L            + +     L     N+                    I+ 
Sbjct: 221 TSSVECLEL--------RDTDLDTFHFSELSTGETNSLIK---------KFTFRNVKITD 263

Query: 572 NALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNL 623
            +L   +      ++ L  L+ S NQL   +P+ +     SL+ + L  N  
Sbjct: 264 ESL-FQVMKLLNQISGLLELEFSRNQLKS-VPDGIFDRLTSLQKIWLHTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 64.8 bits (158), Expect = 5e-11
 Identities = 28/158 (17%), Positives = 60/158 (37%), Gaps = 18/158 (11%)

Query: 91  YLNASLFTPFQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILS--- 147
            +    F     LE L++  +D+    E + L+ +  +S+L        L     +    
Sbjct: 164 KIQRKDFAGLTFLEELEIDASDLQ-SYEPKSLKSIQNVSHL-------ILHMKQHILLLE 215

Query: 148 -SLARLSSLTSLDLSANRLKG----SIDIKGPKRLSRLNNLKVFDLSGNLFNNSILSSLA 202
             +   SS+  L+L    L       +       L +    +   ++       ++  L 
Sbjct: 216 IFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESL-FQVMKLLN 274

Query: 203 RLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYN 240
           ++S L  L    N+L+ S+    FD L++L+++ +  N
Sbjct: 275 QISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTN 311

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  107 bits (269), Expect = 3e-24
 Identities = 88/498 (17%), Positives = 159/498 (31%), Gaps = 79/498 (15%)

Query: 333 SMPSIQYLSLSNSSVSNNSRTLDQGLC-PLVHLQELHMADNDLRGSLPWCLANMTSLRIL 391
            +  ++ L LS+    N  R+LD  +      L+ L ++ N L+ ++      M SLR L
Sbjct: 74  FLSELRVLRLSH----NRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISC--CPMASLRHL 126

Query: 392 DVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPL-FNHSRLKIFDAENNEINA 450
           D+S N            +LT +  L LS   F+    L+ L   H  L     +    + 
Sbjct: 127 DLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFR---QLDLLPVAHLHLSCILLDLVSYHI 183

Query: 451 EIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLE 510
           +  E+ SL  PN  +  L+        +     +     L+   +     N +     L 
Sbjct: 184 KGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLS 243

Query: 511 N---NTKLRQLSLVNDSLVGPFRLPIHS---HKQLRLLDVSKNNFQGHIPLEIGDI---- 560
                  L  ++L +        + +      + +  L++        I  E        
Sbjct: 244 ELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETA 303

Query: 561 LSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSN 620
           L  L + ++       S  + +     +    LS +     I         S   L  + 
Sbjct: 304 LKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTP-FIHMVCPPSPSSFTFLNFTQ 362

Query: 621 NNLEGHMFSRNF-NLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWL 679
           N        +    L  L  L L+ N       ++  K + +                  
Sbjct: 363 NVFT-DSVFQGCSTLKRLQTLILQRNGL-----KNFFKVALM-----------------T 399

Query: 680 GNLTVLRHIIMPKNHIE-GPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLS 738
            N++ L  + +  N +              + +L++S N ++GS+               
Sbjct: 400 KNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSV--------------- 444

Query: 739 KNMLHGQLKEGTFFNCLT--LMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVP 796
                        F CL   + +LDL  N +  +IP  V  L  L  L +A N L+    
Sbjct: 445 -------------FRCLPPKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPD 490

Query: 797 IQLCRLNQLQLLDLSNNN 814
               RL  LQ + L +N 
Sbjct: 491 GVFDRLTSLQYIWLHDNP 508

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  104 bits (262), Expect = 2e-23
 Identities = 76/428 (17%), Positives = 154/428 (35%), Gaps = 34/428 (7%)

Query: 533 IHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLD 592
           I    +LR+L +S N  +  +   +      L   ++S N L  +I      M  L+ LD
Sbjct: 72  ISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSHNRL-QNIS--CCPMASLRHLD 127

Query: 593 LSNNQLTGEIPEHLAMGC-VSLRSLALSNNNLEGHMFSRNFNL-TNLIWLQLEGNHFVGE 650
           LS N     +P     G    L  L LS             +L  + I L L   H  G 
Sbjct: 128 LSFNDFD-VLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGG 186

Query: 651 IPQSLS--KCSSLQGLFLSNNSLSGKIPRWLGNLTVL--RHIIMPKNHIEGPIPLEFCQL 706
             +SL     + L  +F  N+  S ++   +  L  L   +I +   + +  +       
Sbjct: 187 ETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELT 246

Query: 707 RILQILDISDNNISGSLPSCYDFV------CIEQVHLSKNMLHGQLKEGTFFNCLT---- 756
           R   +L+++  +I  +               +E +++    +  ++    F    T    
Sbjct: 247 RGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKS 306

Query: 757 LMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLH 816
           LMI  +       +        ++++  +L+ ++      +     +    L+ + N   
Sbjct: 307 LMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFT 366

Query: 817 GHIPSCFDNTT-LHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQ 875
             +         L       + L+ F    ++   M        LE+ D +  S+     
Sbjct: 367 DSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNM------SSLETLDVSLNSLNSHAY 420

Query: 876 GRV---PSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIES 932
            R       +  L+LS N L G +   +    K++ L+L +N +   IP   ++L+ ++ 
Sbjct: 421 DRTCAWAESILVLNLSSNMLTGSVFRCL--PPKVKVLDLHNNRIMS-IPKDVTHLQALQE 477

Query: 933 LDLSYNKL 940
           L+++ N+L
Sbjct: 478 LNVASNQL 485

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =   99 bits (249), Expect = 9e-22
 Identities = 90/530 (16%), Positives = 170/530 (32%), Gaps = 83/530 (15%)

Query: 129 SNLKMLNLVGNLFNNSILSSLARLSSLTSLDLSANRLKGSIDIKGPKRLSRLNNLKVFDL 188
              K L+L  N  +   +  ++ LS L  L LS NR++ S+D           +L+  D+
Sbjct: 52  PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIR-SLD---FHVFLFNQDLEYLDV 107

Query: 189 SGNLFNNSILSSL--ARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFE 246
           S N      L ++    ++SLR L L  N  +     KEF +L+ L  L +S  +    +
Sbjct: 108 SHNR-----LQNISCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLD 162

Query: 247 VPQACSGLRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTETVTTTTQGFPH 306
           +            L L+   I+ G      + +   L+ L    N+        +     
Sbjct: 163 LLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLH-LVFHPNSLFSVQVNMSVNALG 221

Query: 307 FKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQE 366
              L  + ++D       +FL  +    P++  ++L +   +               ++ 
Sbjct: 222 HLQLSNIKLNDENCQRLMTFLSEL-TRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEY 280

Query: 367 LHMADNDLRGSLPW-----CLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDN 421
           L++ +  +   +           + SL I  V +   +     +       +   +LS +
Sbjct: 281 LNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFL-FSKEALYSVFAEMNIKMLSIS 339

Query: 422 HFQIPISLEPLFNH-SRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITF 480
               P          S     +   N                               +  
Sbjct: 340 --DTPFIHMVCPPSPSSFTFLNFTQN-----------------VFTDS--VFQGCSTLKR 378

Query: 481 PKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLR 540
            + L  Q                           L+    V             +   L 
Sbjct: 379 LQTLILQ------------------------RNGLKNFFKVALMTK--------NMSSLE 406

Query: 541 LLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTG 600
            LDVS N+   H           + V N+S N L GS+         ++ LDL NN++  
Sbjct: 407 TLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPK--VKVLDLHNNRIM- 463

Query: 601 EIPEHLAMGCVSLRSLALSNNNLE---GHMFSRNFNLTNLIWLQLEGNHF 647
            IP+ +     +L+ L +++N L+     +F     LT+L ++ L  N +
Sbjct: 464 SIPKDV-THLQALQELNVASNQLKSVPDGVFD---RLTSLQYIWLHDNPW 509

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 93.8 bits (233), Expect = 7e-20
 Identities = 85/529 (16%), Positives = 170/529 (32%), Gaps = 83/529 (15%)

Query: 103 LESLDLRDNDIAGCVENEGLER--LSRLSNLKMLNLVGNLFNNSILSSLARLSSLTSLDL 160
            ++L L  N I+       L    +S LS L++L L  N   +           L  LD+
Sbjct: 54  TKALSLSQNSISE------LRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDV 107

Query: 161 SANRLKGSIDIKGPKRLSRLNNLKVFDLSGNLFNNSILSSLARLSSLRSLLLYDNRLEGS 220
           S NRL+ +I                              S   ++SLR L L  N  +  
Sbjct: 108 SHNRLQ-NI------------------------------SCCPMASLRHLDLSFNDFDVL 136

Query: 221 IDVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGIRDGSKLLQSMGSF 280
              KEF +L+ L  L +S  +    ++            L L+   I+ G      + + 
Sbjct: 137 PVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNT 196

Query: 281 PSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDARIALNTSFLQIIGESMPSIQYL 340
             L+ L    N+        +        L  + ++D       +FL  +    P++  +
Sbjct: 197 TVLH-LVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSEL-TRGPTLLNV 254

Query: 341 SLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPW-----CLANMTSLRILDVSS 395
           +L +   +               ++ L++ +  +   +           + SL I  V +
Sbjct: 255 TLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKN 314

Query: 396 NQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNH-SRLKIFDAENNEINAEIIE 454
              +     +       +   +LS +    P          S     +   N        
Sbjct: 315 QVFL-FSKEALYSVFAEMNIKMLSIS--DTPFIHMVCPPSPSSFTFLNFTQN-------- 363

Query: 455 SHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTK 514
                                  +   + L  Q       L +          + +N + 
Sbjct: 364 ---------VFTD--SVFQGCSTLKRLQTLILQR----NGLKNF----FKVALMTKNMSS 404

Query: 515 LRQLSLVNDSL-VGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNA 573
           L  L +  +SL    +       + + +L++S N   G +      +  ++ V ++  N 
Sbjct: 405 LETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVF---RCLPPKVKVLDLHNNR 461

Query: 574 LDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNN 622
           +  SIP    ++  LQ L++++NQL   +P+ +     SL+ + L +N 
Sbjct: 462 IM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNP 508

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 85.3 bits (211), Expect = 3e-17
 Identities = 70/421 (16%), Positives = 142/421 (33%), Gaps = 40/421 (9%)

Query: 559 DILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLAL 618
           D+  R    ++S N++          ++ L+ L LS+N++   +  H+ +    L  L +
Sbjct: 49  DLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDV 107

Query: 619 SNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQS--LSKCSSLQGLFLSNNSLSGKIP 676
           S+N L+         + +L  L L  N F   +P        + L  L LS         
Sbjct: 108 SHNRLQNISCC---PMASLRHLDLSFNDFD-VLPVCKEFGNLTKLTFLGLSAAKFRQLDL 163

Query: 677 RWLGNLTVLRHII-MPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQV 735
             + +L +   ++ +   HI+G             +  +   N   S+        +  +
Sbjct: 164 LPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHL 223

Query: 736 HLSKNML----HGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGL-----SQLSYLIL 786
            LS   L      +L            +L+++  H+       V          + YL +
Sbjct: 224 QLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNI 283

Query: 787 AHNNLEGEVP-----IQLCRLNQLQLLDLSNNNLHGHIPSCFDN-TTLHERYNNGSSLQP 840
            +  +   +           L  L +  + N        + +     ++ +  + S    
Sbjct: 284 YNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPF 343

Query: 841 FETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSL--LSGLDLSCNRL--IGHI 896
                     M   P        +FT    T +      +L  L  L L  N L     +
Sbjct: 344 IH--------MVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKV 395

Query: 897 PPQIGNLTKIQTLNLSHNNL-AGPIPSTFSNLRNIESLDLSYNKLS----WKIPYQLVEL 951
                N++ ++TL++S N+L +     T +   +I  L+LS N L+      +P ++  L
Sbjct: 396 ALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVL 455

Query: 952 N 952
           +
Sbjct: 456 D 456

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 80.7 bits (199), Expect = 9e-16
 Identities = 59/412 (14%), Positives = 123/412 (29%), Gaps = 33/412 (8%)

Query: 590 FLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNN---LEGHMFSRNFNLTNLIWLQLEGNH 646
            +D SN  LT  +P+ L       ++L+LS N+   L     S    L+ L  L+L  N 
Sbjct: 35  MVDYSNRNLT-HVPKDL---PPRTKALSLSQNSISELRMPDISF---LSELRVLRLSHNR 87

Query: 647 FVGEIPQSL-SKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEG-PIPLEFC 704
               +   +      L+ L +S+N L   I      +  LRH+ +  N  +  P+  EF 
Sbjct: 88  I-RSLDFHVFLFNQDLEYLDVSHNRLQ-NISC--CPMASLRHLDLSFNDFDVLPVCKEFG 143

Query: 705 QLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSY 764
            L  L  L +S              + +  + L     H +  E          +L L +
Sbjct: 144 NLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVF 203

Query: 765 NHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFD 824
           +  +         ++ L +L L++  L  E   +L           +  N+         
Sbjct: 204 HPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTW 263

Query: 825 NTTLH-ERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLS 883
             ++   ++     ++      + +        +   E F ++  ++           L 
Sbjct: 264 KCSVKLFQFFWPRPVEYLNIYNLTITE------RIDREEFTYSETALKS---------LM 308

Query: 884 GLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWK 943
              +     +           ++    LS ++          +  +   L+ + N  +  
Sbjct: 309 IEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDS 368

Query: 944 IPYQLVELNTLAVFSVAYNNLSGKIPERAAQFATFNESSYEGNPFLCGPPLP 995
           +      L  L    +  N L     + A      +                
Sbjct: 369 VFQGCSTLKRLQTLILQRNGLK-NFFKVALMTKNMSSLETLDVSLNSLNSHA 419

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 69.1 bits (169), Expect = 4e-12
 Identities = 47/237 (19%), Positives = 88/237 (37%), Gaps = 24/237 (10%)

Query: 63  QWERVSCNNTMGRVVVLDLSQTHRGEYWYLNASLFTPFQQLESLDLRDNDI----AGCVE 118
           + +R     +   +  L +       + +   +L++ F ++    L  +D       C  
Sbjct: 291 RIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVC-- 348

Query: 119 NEGLERLSRLSNLKMLNLVGNLFNNSILSSLARLSSLTSLDLSANRLKGSIDIKGPKRLS 178
                     S+   LN   N+F +S+    + L  L +L L  N LK +   K      
Sbjct: 349 ------PPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK-NFF-KVALMTK 400

Query: 179 RLNNLKVFDLSGNLFNNSILSSLARL-SSLRSLLLYDNRLEGSIDVKEFDSL-SNLEELD 236
            +++L+  D+S N  N+           S+  L L  N L GS+    F  L   ++ LD
Sbjct: 401 NMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSV----FRCLPPKVKVLD 456

Query: 237 MSYNEIDNFEVPQACSGLRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNF 293
           +  N I    +P+  + L+ L  L++    ++             SL  + L  N +
Sbjct: 457 LHNNRIM--SIPKDVTHLQALQELNVASNQLKSVPD--GVFDRLTSLQYIWLHDNPW 509

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  104 bits (262), Expect = 1e-23
 Identities = 60/284 (21%), Positives = 102/284 (35%), Gaps = 40/284 (14%)

Query: 538 QLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQ 597
           Q   +  ++      +P     I S     N+  N +      +F +++ L+ L L  N 
Sbjct: 55  QFSKVVCTRRGLS-EVP---QGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNS 110

Query: 598 LTGEIPEHLAMGCVSLRSLALSNNNL---EGHMFSRNFNLTNLIWLQLEGNHFVGEIPQS 654
           +  +I      G  SL +L L +N L       F     L+ L  L L  N        +
Sbjct: 111 IR-QIEVGAFNGLASLNTLELFDNWLTVIPSGAFE---YLSKLRELWLRNNPIESIPSYA 166

Query: 655 LSKCSSLQGLFLS-NNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILD 713
            ++  SL  L L     L          L  L+++ +   +I+  +P     L  L+ L+
Sbjct: 167 FNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MP-NLTPLVGLEELE 224

Query: 714 ISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPD 773
           +S N+                          +++ G+F    +L  L +  + ++  I  
Sbjct: 225 MSGNHFP------------------------EIRPGSFHGLSSLKKLWVMNSQVS-LIER 259

Query: 774 RV-DGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLH 816
              DGL+ L  L LAHNNL          L  L  L L +N  +
Sbjct: 260 NAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 96.4 bits (240), Expect = 5e-21
 Identities = 62/279 (22%), Positives = 100/279 (35%), Gaps = 54/279 (19%)

Query: 62  CQWE--RVSCNNTM---------GRVVVLDLSQTHRGEYWYLNASLFTPFQQLESLDLRD 110
           C  +  +V C                  L+L + +      + A  F     LE L L  
Sbjct: 52  CSNQFSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQM---IQADTFRHLHHLEVLQLGR 108

Query: 111 NDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILS----SLARLSSLTSLDLSANRLK 166
           N I   +E      L+ L+ L        LF+N +      +   LS L  L L  N ++
Sbjct: 109 NSIR-QIEVGAFNGLASLNTL-------ELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE 160

Query: 167 GSIDIKGPKRLSRLNNLKVFDLSGNLFNNSILS----SLARLSSLRSLLLYDNRLEGSID 222
            SI        +R+ +L   DL        +      +   L +L+ L L    ++   D
Sbjct: 161 -SIP---SYAFNRVPSLMRLDLGE---LKKLEYISEGAFEGLFNLKYLNLGMCNIK---D 210

Query: 223 VKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGIRDGSKLLQ-SMGSF- 280
           +     L  LEEL+MS N       P +  GL  L  L +        S++      +F 
Sbjct: 211 MPNLTPLVGLEELEMSGNHFPEIR-PGSFHGLSSLKKLWV------MNSQVSLIERNAFD 263

Query: 281 --PSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDD 317
              SL  L+L++NN +   +     F   + L EL++  
Sbjct: 264 GLASLVELNLAHNNLS---SLPHDLFTPLRYLVELHLHH 299

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 91.3 bits (227), Expect = 2e-19
 Identities = 66/295 (22%), Positives = 117/295 (39%), Gaps = 61/295 (20%)

Query: 100 FQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILSSLARLSSLTSLD 159
                 L+L +N+I     +        L +L++L L  N      + +   L+SL +L+
Sbjct: 74  PSNTRYLNLMENNIQMIQADT----FRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLE 129

Query: 160 LSANRLKGSIDIKGPKRLSRLNNLKVFDLSGNLFNNSILSSLARLSSLRSLLLYD-NRLE 218
           L  N L   I          L+ L+   L  N   +    +  R+ SL  L L +  +LE
Sbjct: 130 LFDNWLT-VIP---SGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLE 185

Query: 219 GSIDVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGIRDGSKLLQSMG 278
             I    F+ L NL+ L++    I +                             + ++ 
Sbjct: 186 -YISEGAFEGLFNLKYLNLGMCNIKD-----------------------------MPNLT 215

Query: 279 SFPSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDARIAL--NTSFLQIIGESMPS 336
               L  L++S N+F E    +   F    SLK+L++ +++++L    +F     + + S
Sbjct: 216 PLVGLEELEMSGNHFPEIRPGS---FHGLSSLKKLWVMNSQVSLIERNAF-----DGLAS 267

Query: 337 IQYLSLSNSSVSNNSRTLDQGLC-PLVHLQELHMADNDLRGSLPW-CLANMTSLR 389
           +  L+L++    NN  +L   L  PL +L ELH+  N      PW C  ++  L 
Sbjct: 268 LVELNLAH----NNLSSLPHDLFTPLRYLVELHLHHN------PWNCDCDILWLA 312

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 89.4 bits (222), Expect = 1e-18
 Identities = 60/276 (21%), Positives = 101/276 (36%), Gaps = 50/276 (18%)

Query: 650 EIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRIL 709
           E+PQ +   S+ + L L  N++         +L  L  + + +N I       F  L  L
Sbjct: 68  EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASL 125

Query: 710 QILDISDNNISGSLPSC--YDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLS-YNH 766
             L++ DN ++  +PS        + ++ L  N +   +    F    +LM LDL     
Sbjct: 126 NTLELFDNWLT-VIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKK 183

Query: 767 LNGNIPDRV-DGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDN 825
           L   I +   +GL  L YL L   N++ ++P  L  L  L+ L++S N+     P  F  
Sbjct: 184 LE-YISEGAFEGLFNLKYLNLGMCNIK-DMP-NLTPLVGLEELEMSGNHFPEIRPGSFHG 240

Query: 826 ----TTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSL 881
                 L    +  S ++                      +FD                 
Sbjct: 241 LSSLKKLWVMNSQVSLIER--------------------NAFDGLAS------------- 267

Query: 882 LSGLDLSCNRLIGHIPPQI-GNLTKIQTLNLSHNNL 916
           L  L+L+ N L   +P  +   L  +  L+L HN  
Sbjct: 268 LVELNLAHNNLS-SLPHDLFTPLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 81.7 bits (202), Expect = 3e-16
 Identities = 52/267 (19%), Positives = 94/267 (35%), Gaps = 47/267 (17%)

Query: 732 IEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRV-DGLSQLSYLILAHNN 790
              ++L +N +   ++  TF +   L +L L  N +   I     +GL+ L+ L L  N 
Sbjct: 77  TRYLNLMENNIQ-MIQADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLELFDNW 134

Query: 791 LEGEVPIQLCRLNQLQLLDLSNNNLHGHIPS-CFDN----TTLH-ERYNNGSSLQPFETS 844
           L          L++L+ L L NN +   IPS  F+       L          +      
Sbjct: 135 LTVIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISE---- 189

Query: 845 FVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLT 904
                            +F+                 L  L+L    +     P +  L 
Sbjct: 190 ----------------GAFEGLFN-------------LKYLNLGMCNI--KDMPNLTPLV 218

Query: 905 KIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNL 964
            ++ L +S N+     P +F  L +++ L +  +++S         L +L   ++A+NNL
Sbjct: 219 GLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNL 278

Query: 965 SGKIPERAAQFATFNES-SYEGNPFLC 990
           S  +P        +        NP+ C
Sbjct: 279 S-SLPHDLFTPLRYLVELHLHHNPWNC 304

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 74.8 bits (184), Expect = 5e-14
 Identities = 46/250 (18%), Positives = 83/250 (33%), Gaps = 23/250 (9%)

Query: 280 FPSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDARIAL--NTSFLQIIGESMPSI 337
             +   L+L  NN       T   F H   L+ L +    I      +F       + S+
Sbjct: 74  PSNTRYLNLMENNIQMIQADT---FRHLHHLEVLQLGRNSIRQIEVGAF-----NGLASL 125

Query: 338 QYLSLSNSSVSNNSRTLDQG-LCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSN 396
             L L +    N    +  G    L  L+EL + +N +     +    + SL  LD+   
Sbjct: 126 NTLELFD----NWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGEL 181

Query: 397 QLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESH 456
           + +  IS      L +++ L L   + +    +  L     L+  +   N      I   
Sbjct: 182 KKLEYISEGAFEGLFNLKYLNLGMCNIK---DMPNLTPLVGLEELEMSGNHF--PEIRPG 236

Query: 457 SLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLR 516
           S    +  L+ L + +     I           L  + L+H  +    P+ L      L 
Sbjct: 237 SFHGLS-SLKKLWVMNSQVSLIE-RNAFDGLASLVELNLAHNNL-SSLPHDLFTPLRYLV 293

Query: 517 QLSLVNDSLV 526
           +L L ++   
Sbjct: 294 ELHLHHNPWN 303

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 74.4 bits (183), Expect = 7e-14
 Identities = 50/184 (27%), Positives = 76/184 (41%), Gaps = 9/184 (4%)

Query: 537 KQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPS-SFGNMNFLQFLDLSN 595
             L  L++  N     IP    + LS+L    +  N +  SIPS +F  +  L  LDL  
Sbjct: 123 ASLNTLELFDNWLT-VIPSGAFEYLSKLRELWLRNNPI-ESIPSYAFNRVPSLMRLDLGE 180

Query: 596 -NQLTGEIPEHLAMGCVSLRSLALSNNNLEG-HMFSRNFNLTNLIWLQLEGNHFVGEIPQ 653
             +L   I E    G  +L+ L L   N++     +    L  L  L++ GNHF    P 
Sbjct: 181 LKKLE-YISEGAFEGLFNLKYLNLGMCNIKDMPNLT---PLVGLEELEMSGNHFPEIRPG 236

Query: 654 SLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILD 713
           S    SSL+ L++ N+ +S         L  L  + +  N++       F  LR L  L 
Sbjct: 237 SFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELH 296

Query: 714 ISDN 717
           +  N
Sbjct: 297 LHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 64.4 bits (157), Expect = 8e-11
 Identities = 40/219 (18%), Positives = 72/219 (32%), Gaps = 46/219 (21%)

Query: 760 LDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHI 819
           +  +   L+  +P  +   S   YL L  NN++         L+ L++L L  N++    
Sbjct: 59  VVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIE 115

Query: 820 PSCFDN----TTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQ 875
              F+      TL    N  + +                       +F++ +K       
Sbjct: 116 VGAFNGLASLNTLELFDNWLTVIPS--------------------GAFEYLSK------- 148

Query: 876 GRVPSLLSGLDLSCNRLIGHIPPQI-GNLTKIQTLNLSHNNLAGPIPS-TFSNLRNIESL 933
                 L  L L  N  I  IP      +  +  L+L        I    F  L N++ L
Sbjct: 149 ------LRELWLRNNP-IESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYL 201

Query: 934 DLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERA 972
           +L    +   +P  L  L  L    ++ N+   +I   +
Sbjct: 202 NLGMCNIK-DMPN-LTPLVGLEELEMSGNHFP-EIRPGS 237

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  104 bits (261), Expect = 1e-23
 Identities = 59/263 (22%), Positives = 98/263 (37%), Gaps = 36/263 (13%)

Query: 559 DILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLAL 618
            I +   + N+  N +     +SF ++  L+ L LS N +   I      G  +L +L L
Sbjct: 61  GISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLEL 119

Query: 619 SNNNL---EGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLS-NNSLSGK 674
            +N L       F     L+ L  L L  N        + ++  SL+ L L     LS  
Sbjct: 120 FDNRLTTIPNGAFV---YLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYI 176

Query: 675 IPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQ 734
                  L+ LR++ +   ++   IP     L  L  LD+S N++S              
Sbjct: 177 SEGAFEGLSNLRYLNLAMCNLRE-IP-NLTPLIKLDELDLSGNHLS-------------- 220

Query: 735 VHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRV-DGLSQLSYLILAHNNLEG 793
                      ++ G+F   + L  L +  + +   I     D L  L  + LAHNNL  
Sbjct: 221 ----------AIRPGSFQGLMHLQKLWMIQSQIQ-VIERNAFDNLQSLVEINLAHNNLTL 269

Query: 794 EVPIQLCRLNQLQLLDLSNNNLH 816
                   L+ L+ + L +N  +
Sbjct: 270 LPHDLFTPLHHLERIHLHHNPWN 292

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 94.4 bits (235), Expect = 2e-20
 Identities = 56/238 (23%), Positives = 90/238 (37%), Gaps = 40/238 (16%)

Query: 92  LNASLFTPFQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILS---- 147
           +  + F   + LE L L  N I   +E      L+ L+ L        LF+N + +    
Sbjct: 79  IKVNSFKHLRHLEILQLSRNHIRT-IEIGAFNGLANLNTL-------ELFDNRLTTIPNG 130

Query: 148 SLARLSSLTSLDLSANRLKGSIDIKGPKRLSRLNNLKVFDLSGNLFNNSILS----SLAR 203
           +   LS L  L L  N ++ SI      R+  L  L   DL        +      +   
Sbjct: 131 AFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRL---DLGE---LKRLSYISEGAFEG 183

Query: 204 LSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLL 263
           LS+LR L L    L    ++     L  L+ELD+S N +     P +  GL  L  L + 
Sbjct: 184 LSNLRYLNLAMCNLR---EIPNLTPLIKLDELDLSGNHLSAIR-PGSFQGLMHLQKLWM- 238

Query: 264 RVGIRDGSKLLQ-SMGSF---PSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDD 317
                  S++      +F    SL  ++L++NN T         F     L+ +++  
Sbjct: 239 -----IQSQIQVIERNAFDNLQSLVEINLAHNNLT---LLPHDLFTPLHHLERIHLHH 288

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 94.4 bits (235), Expect = 2e-20
 Identities = 65/295 (22%), Positives = 114/295 (38%), Gaps = 61/295 (20%)

Query: 100 FQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILSSLARLSSLTSLD 159
                 L+L +N I     N        L +L++L L  N      + +   L++L +L+
Sbjct: 63  STNTRLLNLHENQIQIIKVNS----FKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLE 118

Query: 160 LSANRLKGSIDIKGPKRLSRLNNLKVFDLSGNLFNNSILSSLARLSSLRSLLLYD-NRLE 218
           L  NRL  +I          L+ LK   L  N   +    +  R+ SLR L L +  RL 
Sbjct: 119 LFDNRLT-TIP---NGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLS 174

Query: 219 GSIDVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGIRDGSKLLQSMG 278
             I    F+ LSNL  L+++   +                               + ++ 
Sbjct: 175 -YISEGAFEGLSNLRYLNLAMCNLRE-----------------------------IPNLT 204

Query: 279 SFPSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDARIAL--NTSFLQIIGESMPS 336
               L+ LDLS N+ +     +   F     L++L+M  ++I +    +F     +++ S
Sbjct: 205 PLIKLDELDLSGNHLSAIRPGS---FQGLMHLQKLWMIQSQIQVIERNAF-----DNLQS 256

Query: 337 IQYLSLSNSSVSNNSRTLDQG-LCPLVHLQELHMADNDLRGSLPW-CLANMTSLR 389
           +  ++L++    NN   L      PL HL+ +H+  N      PW C  ++  L 
Sbjct: 257 LVEINLAH----NNLTLLPHDLFTPLHHLERIHLHHN------PWNCNCDILWLS 301

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 90.6 bits (225), Expect = 4e-19
 Identities = 58/292 (19%), Positives = 100/292 (34%), Gaps = 75/292 (25%)

Query: 659 SSLQGLFLSNNSLSGKIPRWL-GNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDN 717
           +    +     +L  ++P  +  N  +L    + +N I+      F  LR L+IL +S N
Sbjct: 43  NQFSKVICVRKNLR-EVPDGISTNTRLLN---LHENQIQIIKVNSFKHLRHLEILQLSRN 98

Query: 718 NISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRV-D 776
           +I                          ++ G F     L  L+L  N L   IP+    
Sbjct: 99  HIR------------------------TIEIGAFNGLANLNTLELFDNRLT-TIPNGAFV 133

Query: 777 GLSQLSYLILAHNNLEGEVPIQL-CRLNQLQLLDLSNNNLHGHIPS-CFDN----TTLHE 830
            LS+L  L L +N +E  +P     R+  L+ LDL       +I    F+       L+ 
Sbjct: 134 YLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNL 192

Query: 831 RYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCN 890
              N   +                                       +  L   LDLS N
Sbjct: 193 AMCNLREIPNLT----------------------------------PLIKLDE-LDLSGN 217

Query: 891 RLIGHIPPQI-GNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLS 941
             +  I P     L  +Q L +  + +     + F NL+++  ++L++N L+
Sbjct: 218 H-LSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT 268

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 80.9 bits (200), Expect = 6e-16
 Identities = 40/176 (22%), Positives = 73/176 (41%), Gaps = 19/176 (10%)

Query: 91  YLNASLFTPFQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILS--- 147
            +    F    +L+ L LR+N I   + +    R+  L  L +           +     
Sbjct: 126 TIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGE------LKRLSYISE 178

Query: 148 -SLARLSSLTSLDLSANRLKGSIDIKGPKRLSRLNNLKVFDLSGNLFNNSILSSLARLSS 206
            +   LS+L  L+L+   L+  I       L+ L  L   DLSGN  +     S   L  
Sbjct: 179 GAFEGLSNLRYLNLAMCNLR-EIP-----NLTPLIKLDELDLSGNHLSAIRPGSFQGLMH 232

Query: 207 LRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHL 262
           L+ L +  ++++  I+   FD+L +L E+++++N +         + L  L  +HL
Sbjct: 233 LQKLWMIQSQIQ-VIERNAFDNLQSLVEINLAHNNLTLLP-HDLFTPLHHLERIHL 286

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 77.1 bits (190), Expect = 8e-15
 Identities = 47/220 (21%), Positives = 71/220 (32%), Gaps = 43/220 (19%)

Query: 759 ILDLSYNHLNGNIPDRV-DGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHG 817
           +L+L  N +   I       L  L  L L+ N++          L  L  L+L +N L  
Sbjct: 68  LLNLHENQIQ-IIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTT 126

Query: 818 HIPSCFDN----TTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYT 873
                F        L  R N   S+                       +F+         
Sbjct: 127 IPNGAFVYLSKLKELWLRNNPIESIPS--------------------YAFNRIPS----- 161

Query: 874 YQGRVPSLLSGLDLSCNRLIGHIPPQI-GNLTKIQTLNLSHNNLAGPIPSTFSNLRNIES 932
                   L  LDL   + + +I       L+ ++ LNL+  NL   IP   + L  ++ 
Sbjct: 162 --------LRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE-IP-NLTPLIKLDE 211

Query: 933 LDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERA 972
           LDLS N LS   P     L  L    +  + +   I   A
Sbjct: 212 LDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQ-VIERNA 250

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 75.2 bits (185), Expect = 4e-14
 Identities = 45/182 (24%), Positives = 69/182 (37%), Gaps = 7/182 (3%)

Query: 538 QLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLS-NN 596
            L  L++  N     IP      LS+L    +  N ++     +F  +  L+ LDL    
Sbjct: 113 NLNTLELFDNRLT-TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELK 171

Query: 597 QLTGEIPEHLAMGCVSLRSLALSNNNLEG-HMFSRNFNLTNLIWLQLEGNHFVGEIPQSL 655
           +L+  I E    G  +LR L L+  NL      +    L  L  L L GNH     P S 
Sbjct: 172 RLS-YISEGAFEGLSNLRYLNLAMCNLREIPNLT---PLIKLDELDLSGNHLSAIRPGSF 227

Query: 656 SKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDIS 715
                LQ L++  + +         NL  L  I +  N++       F  L  L+ + + 
Sbjct: 228 QGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLH 287

Query: 716 DN 717
            N
Sbjct: 288 HN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 73.6 bits (181), Expect = 9e-14
 Identities = 47/250 (18%), Positives = 86/250 (34%), Gaps = 23/250 (9%)

Query: 280 FPSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDARIAL--NTSFLQIIGESMPSI 337
             +   L+L  N        +   F H + L+ L +    I      +F       + ++
Sbjct: 63  STNTRLLNLHENQIQIIKVNS---FKHLRHLEILQLSRNHIRTIEIGAF-----NGLANL 114

Query: 338 QYLSLSNSSVSNNSRTLDQG-LCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSN 396
             L L +    N   T+  G    L  L+EL + +N +     +    + SLR LD+   
Sbjct: 115 NTLELFD----NRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGEL 170

Query: 397 QLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESH 456
           + +  IS      L+++  L L+  + +    +  L    +L   D   N +    I   
Sbjct: 171 KRLSYISEGAFEGLSNLRYLNLAMCNLR---EIPNLTPLIKLDELDLSGNHL--SAIRPG 225

Query: 457 SLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLR 516
           S       LQ L +       I       N   L  + L+H  +    P+ L      L 
Sbjct: 226 SFQGLM-HLQKLWMIQSQIQVIE-RNAFDNLQSLVEINLAHNNL-TLLPHDLFTPLHHLE 282

Query: 517 QLSLVNDSLV 526
           ++ L ++   
Sbjct: 283 RIHLHHNPWN 292

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 54.4 bits (131), Expect = 1e-07
 Identities = 24/96 (25%), Positives = 42/96 (43%), Gaps = 3/96 (3%)

Query: 878 VPSLLSGLDLSCNRLIGHIPP-QIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLS 936
           + +    L+L  N+ I  I      +L  ++ L LS N++       F+ L N+ +L+L 
Sbjct: 62  ISTNTRLLNLHENQ-IQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF 120

Query: 937 YNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERA 972
            N+L+       V L+ L    +  N +   IP  A
Sbjct: 121 DNRLTTIPNGAFVYLSKLKELWLRNNPIE-SIPSYA 155

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score =  100 bits (250), Expect = 4e-23
 Identities = 51/295 (17%), Positives = 117/295 (39%), Gaps = 41/295 (13%)

Query: 142 NNSI--LSSLARLSSLTSLDLSANRLKGSIDIKGPKRLSRLNNLKVFDLSGNLFNNSILS 199
             +I  +     L++   +    +       +      + L+ +      G       + 
Sbjct: 6   PTAINVIFPDPALANAIKIAAGKSN------VTDTVTQADLDGITTLSAFGTGVTT--IE 57

Query: 200 SLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSY 259
            +  L++L  L L DN++    D+    +L+ + EL++S N + N       +GL+ +  
Sbjct: 58  GVQYLNNLIGLELKDNQIT---DLAPLKNLTKITELELSGNPLKNVSAI---AGLQSIKT 111

Query: 260 LHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDAR 319
           L L    I D    +  +    +L  L L  N  T              +L+ L + +A+
Sbjct: 112 LDLTSTQITD----VTPLAGLSNLQVLYLDLNQITN-----ISPLAGLTNLQYLSIGNAQ 162

Query: 320 IALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLP 379
           ++ + + L     ++  +  L   ++ +S+ S      L  L +L E+H+ +N +    P
Sbjct: 163 VS-DLTPL----ANLSKLTTLKADDNKISDIS-----PLASLPNLIEVHLKNNQISDVSP 212

Query: 380 WCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFN 434
             LAN ++L I+ +++      I++ P+ +  ++    +       PI+   + +
Sbjct: 213 --LANTSNLFIVTLTNQT----ITNQPVFYNNNLVVPNVVKGPSGAPIAPATISD 261

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 93.6 bits (233), Expect = 7e-21
 Identities = 50/255 (19%), Positives = 101/255 (39%), Gaps = 31/255 (12%)

Query: 97  FTPFQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILSSLARLSSLT 156
                 + +L      +        +E +  L+NL  L L  N   +  L+ L  L+ +T
Sbjct: 37  QADLDGITTLSAFGTGV------TTIEGVQYLNNLIGLELKDNQITD--LAPLKNLTKIT 88

Query: 157 SLDLSANRLKGSIDIKGPKRLSRLNNLKVFDLSGNLFNNSILSSLARLSSLRSLLLYDNR 216
            L+LS N LK   ++     ++ L ++K  DL+     +  ++ LA LS+L+ L L  N+
Sbjct: 89  ELELSGNPLK---NVSA---IAGLQSIKTLDLTSTQITD--VTPLAGLSNLQVLYLDLNQ 140

Query: 217 LEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGIRDGSKLLQS 276
           +    ++     L+NL+ L +   ++ +       + L KL+ L      I D    +  
Sbjct: 141 IT---NISPLAGLTNLQYLSIGNAQVSDLT---PLANLSKLTTLKADDNKISD----ISP 190

Query: 277 MGSFPSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDARIALNTSFLQIIGESMPS 336
           + S P+L  + L  N  ++          +  +L  + + +  I     F          
Sbjct: 191 LASLPNLIEVHLKNNQISD-----VSPLANTSNLFIVTLTNQTITNQPVFYNNNLVVPNV 245

Query: 337 IQYLSLSNSSVSNNS 351
           ++  S +  + +  S
Sbjct: 246 VKGPSGAPIAPATIS 260

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 93.6 bits (233), Expect = 7e-21
 Identities = 52/299 (17%), Positives = 114/299 (38%), Gaps = 41/299 (13%)

Query: 100 FQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILSSLARLSSLTSLD 159
                 +    +++            + L  +  L+  G       +  +  L++L  L+
Sbjct: 18  LANAIKIAAGKSNV------TDTVTQADLDGITTLSAFGTGVTT--IEGVQYLNNLIGLE 69

Query: 160 LSANRLKGSIDIKGPKRLSRLNNLKVFDLSGNLFNNSILSSLARLSSLRSLLLYDNRLEG 219
           L  N++    D+     L  L  +   +LSGN   N  +S++A L S+++L L   ++  
Sbjct: 70  LKDNQIT---DLAP---LKNLTKITELELSGNPLKN--VSAIAGLQSIKTLDLTSTQI-- 119

Query: 220 SIDVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGIRDGSKLLQSMGS 279
             DV     LSNL+ L +  N+I N       +GL  L YL +    + D    L  + +
Sbjct: 120 -TDVTPLAGLSNLQVLYLDLNQITNIS---PLAGLTNLQYLSIGNAQVSD----LTPLAN 171

Query: 280 FPSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDARIALNTSFLQIIGESMPSIQY 339
              L TL    N  ++             +L E+++ + +I+  +        +  ++  
Sbjct: 172 LSKLTTLKADDNKISD-----ISPLASLPNLIEVHLKNNQISDVSPL-----ANTSNLFI 221

Query: 340 LSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQL 398
           ++L+N +++N     +  L     +    +         P  +++  +    +++ N  
Sbjct: 222 VTLTNQTITNQPVFYNNNL-----VVPNVVKGPSGAPIAPATISDNGTYASPNLTWNLT 275

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 66.6 bits (163), Expect = 8e-12
 Identities = 49/280 (17%), Positives = 90/280 (32%), Gaps = 55/280 (19%)

Query: 679 LGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLS 738
              L     I   K+++   +      L  +  L      ++ ++        +  + L 
Sbjct: 15  DPALANAIKIAAGKSNVTDTVTQA--DLDGITTLSAFGTGVT-TIEGVQYLNNLIGLELK 71

Query: 739 KNMLHGQLKEGTFFNCLT-LMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPI 797
            N    Q+ +      LT +  L+LS N L  N+   + GL  +  L L    +    P 
Sbjct: 72  DN----QITDLAPLKNLTKITELELSGNPLK-NVSA-IAGLQSIKTLDLTSTQITDVTP- 124

Query: 798 QLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHE---RYNNGSSLQPFETSFVIMGGMDVD 854
            L  L+ LQ+L L  N +  +I      T L          S L P              
Sbjct: 125 -LAGLSNLQVLYLDLNQIT-NISPLAGLTNLQYLSIGNAQVSDLTPLANL---------- 172

Query: 855 PKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHN 914
                                    S L+ L    N+ I  I P + +L  +  ++L +N
Sbjct: 173 -------------------------SKLTTLKADDNK-ISDISP-LASLPNLIEVHLKNN 205

Query: 915 NLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTL 954
            ++   P   +N  N+  + L+   ++ +  +    L   
Sbjct: 206 QISDVSP--LANTSNLFIVTLTNQTITNQPVFYNNNLVVP 243

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 65.5 bits (160), Expect = 2e-11
 Identities = 51/313 (16%), Positives = 100/313 (31%), Gaps = 57/313 (18%)

Query: 633 NLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPK 692
            L N I +    ++    +    +    +  L      ++      +  L  L  + +  
Sbjct: 17  ALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTIEG--VQYLNNLIGLELKD 72

Query: 693 NHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFF 752
           N I    PL+   L  +  L++S N +  ++ +      I+ + L+   +          
Sbjct: 73  NQITDLAPLK--NLTKITELELSGNPLK-NVSAIAGLQSIKTLDLTSTQITDV---TPLA 126

Query: 753 NCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSN 812
               L +L L  N +  NI   + GL+ L YL + +  +    P+    L++L  L   +
Sbjct: 127 GLSNLQVLYLDLNQIT-NISP-LAGLTNLQYLSIGNAQVSDLTPLA--NLSKLTTLKADD 182

Query: 813 NNLHGHIPSCFDNTTLHE---RYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKS 869
           N +   I        L E   + N  S + P   +                         
Sbjct: 183 NKIS-DISPLASLPNLIEVHLKNNQISDVSPLANT------------------------- 216

Query: 870 ITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPI-PSTFSNLR 928
                     S L  + L+   +       +     +   N+       PI P+T S+  
Sbjct: 217 ----------SNLFIVTLTNQTITN---QPVFYNNNLVVPNVVKGPSGAPIAPATISDNG 263

Query: 929 NIESLDLSYNKLS 941
              S +L++N  S
Sbjct: 264 TYASPNLTWNLTS 276

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 65.1 bits (159), Expect = 3e-11
 Identities = 59/301 (19%), Positives = 114/301 (37%), Gaps = 27/301 (8%)

Query: 429 LEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQH 488
           + P    +      A  + +  + +    L      + +L        G+T  + +   +
Sbjct: 12  IFPDPALANAIKIAAGKSNVT-DTVTQADLD----GITTLSAFG---TGVTTIEGVQYLN 63

Query: 489 DLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNN 548
           +L  + L   ++ +  P   L+N TK+ +L L  + L       I   + ++ LD++   
Sbjct: 64  NLIGLELKDNQITDLAP---LKNLTKITELELSGNPLKNVS--AIAGLQSIKTLDLTSTQ 118

Query: 549 FQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAM 608
                PL     LS L V  + +N +  +  S    +  LQ+L + N Q++   P  LA 
Sbjct: 119 ITDVTPLAG---LSNLQVLYLDLNQI--TNISPLAGLTNLQYLSIGNAQVSDLTP--LA- 170

Query: 609 GCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSN 668
               L +L   +N +     S   +L NLI + L+ N      P  L+  S+L  + L+N
Sbjct: 171 NLSKLTTLKADDNKIS--DISPLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTN 226

Query: 669 NSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYD 728
            +++ +   +  NL V    ++         P            +++ N  S      Y 
Sbjct: 227 QTITNQPVFYNNNLVVP--NVVKGPSGAPIAPATISDNGTYASPNLTWNLTSFINNVSYT 284

Query: 729 F 729
           F
Sbjct: 285 F 285

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 64.3 bits (157), Expect = 4e-11
 Identities = 49/277 (17%), Positives = 98/277 (35%), Gaps = 26/277 (9%)

Query: 361 LVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSD 420
           L +  ++    +++  ++    A++  +  L      +    +   + +L ++  L L D
Sbjct: 18  LANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVT---TIEGVQYLNNLIGLELKD 72

Query: 421 NHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITF 480
           N       L PL N +++   +   N +   +     L      +++L L+S     IT 
Sbjct: 73  NQIT---DLAPLKNLTKITELELSGNPLK-NVSAIAGLQ----SIKTLDLTST---QITD 121

Query: 481 PKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLR 540
              L    +L+ + L   ++    P   L   T L+ LS+ N  +      P+ +  +L 
Sbjct: 122 VTPLAGLSNLQVLYLDLNQITNISP---LAGLTNLQYLSIGNAQVSDL--TPLANLSKLT 176

Query: 541 LLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTG 600
            L    N      PL     L  L   ++  N +  S  S   N + L  + L+N  +T 
Sbjct: 177 TLKADDNKISDISPLAS---LPNLIEVHLKNNQI--SDVSPLANTSNLFIVTLTNQTITN 231

Query: 601 EIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNL 637
           +   +     V       S   +     S N    + 
Sbjct: 232 QPVFYNNNLVVPNVVKGPSGAPIAPATISDNGTYASP 268

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 61.6 bits (150), Expect = 4e-10
 Identities = 46/277 (16%), Positives = 90/277 (32%), Gaps = 55/277 (19%)

Query: 655 LSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDI 714
               ++   +    ++++  +     +L  +  +      +     ++   L  L  L++
Sbjct: 15  DPALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTIEGVQ--YLNNLIGLEL 70

Query: 715 SDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLT-LMILDLSYNHLNGNIPD 773
            DN I+  L    +   I ++ LS N     LK  +    L  +  LDL+   +    P 
Sbjct: 71  KDNQIT-DLAPLKNLTKITELELSGN----PLKNVSAIAGLQSIKTLDLTSTQITDVTP- 124

Query: 774 RVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHE--- 830
            + GLS L  L L  N +    P  L  L  LQ L + N  +   +    + + L     
Sbjct: 125 -LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVS-DLTPLANLSKLTTLKA 180

Query: 831 RYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCN 890
             N  S + P  +                                      L  + L  N
Sbjct: 181 DDNKISDISPLASL-----------------------------------PNLIEVHLKNN 205

Query: 891 RLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNL 927
           + I  + P + N + +  + L++  +        +NL
Sbjct: 206 Q-ISDVSP-LANTSNLFIVTLTNQTITNQPVFYNNNL 240

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 55.5 bits (134), Expect = 3e-08
 Identities = 42/212 (19%), Positives = 79/212 (37%), Gaps = 27/212 (12%)

Query: 757 LMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLH 816
            + +    +++   +      L  ++ L      +     +Q   LN L  L+L +N + 
Sbjct: 21  AIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTIEGVQ--YLNNLIGLELKDNQIT 76

Query: 817 GHIPSCFDNTTLHE---RYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYT 873
             +    + T + E     N   ++                   Q +++ D T+  IT  
Sbjct: 77  -DLAPLKNLTKITELELSGNPLKNVSAIAGL-------------QSIKTLDLTSTQITDV 122

Query: 874 YQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESL 933
                 S L  L L  N+ I +I P +  LT +Q L++ +  ++   P   +NL  + +L
Sbjct: 123 TPLAGLSNLQVLYLDLNQ-ITNISP-LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTL 178

Query: 934 DLSYNKLSWKIPYQLVELNTLAVFSVAYNNLS 965
               NK+S  I   L  L  L    +  N +S
Sbjct: 179 KADDNKIS-DISP-LASLPNLIEVHLKNNQIS 208

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 50.1 bits (120), Expect = 2e-06
 Identities = 31/198 (15%), Positives = 64/198 (32%), Gaps = 35/198 (17%)

Query: 776 DGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHE---RY 832
             L+    +    +N+   V      L+ +  L      +   I        L     + 
Sbjct: 16  PALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVT-TIEGVQYLNNLIGLELKD 72

Query: 833 NNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSL-----LSGLDL 887
           N  + L P +                 +   + +   +       V ++     +  LDL
Sbjct: 73  NQITDLAPLK-------------NLTKITELELSGNPLK-----NVSAIAGLQSIKTLDL 114

Query: 888 SCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQ 947
           +  + I  + P +  L+ +Q L L  N +    P   + L N++ L +   ++S  +   
Sbjct: 115 TSTQ-ITDVTP-LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVS-DLT-P 168

Query: 948 LVELNTLAVFSVAYNNLS 965
           L  L+ L       N +S
Sbjct: 169 LANLSKLTTLKADDNKIS 186

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  100 bits (250), Expect = 3e-22
 Identities = 66/395 (16%), Positives = 127/395 (32%), Gaps = 49/395 (12%)

Query: 572 NALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRN 631
             +  +   S   +  L  LD  N+ +T ++          L  L  ++NN+     S  
Sbjct: 28  FEMQATDTISEEQLATLTSLDCHNSSIT-DMTG--IEKLTGLTKLICTSNNITTLDLS-- 82

Query: 632 FNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMP 691
              TNL +L  + N     +   ++  + L  L    N L+ K+   +    +L ++   
Sbjct: 83  -QNTNLTYLACDSNKLT-NLD--VTPLTKLTYLNCDTNKLT-KLD--VSQNPLLTYLNCA 135

Query: 692 KNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTF 751
           +N +     ++      L  LD   N    +         +  +  S N    ++ E   
Sbjct: 136 RNTLT---EIDVSHNTQLTELDCHLNKKI-TKLDVTPQTQLTTLDCSFN----KITELDV 187

Query: 752 FNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLS 811
                L  L+   N++   +   ++   QL++L  + N L     I +  L QL   D S
Sbjct: 188 SQNKLLNRLNCDTNNIT-KLD--LNQNIQLTFLDCSSNKLTE---IDVTPLTQLTYFDCS 241

Query: 812 NNNLHGHIPSCFDN-TTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSI 870
            N L     S     TTLH    +   +             D+    Q++       + I
Sbjct: 242 VNPLTELDVSTLSKLTTLHCIQTDLLEI-------------DLTHNTQLIYFQAEGCRKI 288

Query: 871 TYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNI 930
                     L   LD     +   +   +    K+  L L++  L   +    S+   +
Sbjct: 289 KELDVTHNTQLYL-LDCQAAGIT-ELD--LSQNPKLVYLYLNNTELTE-LD--VSHNTKL 341

Query: 931 ESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLS 965
           +SL      +       + ++  L     A     
Sbjct: 342 KSLSCVNAHIQ-DFS-SVGKIPALNNNFEAEGQTI 374

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 99.0 bits (247), Expect = 7e-22
 Identities = 66/396 (16%), Positives = 133/396 (33%), Gaps = 73/396 (18%)

Query: 92  LNASLFTPFQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILS-SLA 150
            +         L SLD  ++ I        +  + +L+ L  L       +N+I +  L+
Sbjct: 33  TDTISEEQLATLTSLDCHNSSI------TDMTGIEKLTGLTKL----ICTSNNITTLDLS 82

Query: 151 RLSSLTSLDLSANRLKGSIDIKGPKRLSRL----NNLKVFDLSGN-------LFNNSILS 199
           + ++LT L   +N+L  ++D+    +L+ L    N L   D+S N          N++  
Sbjct: 83  QNTNLTYLACDSNKLT-NLDVTPLTKLTYLNCDTNKLTKLDVSQNPLLTYLNCARNTLTE 141

Query: 200 -SLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLS 258
             ++  + L  L  + N+    I   +    + L  LD S+N+I   +V    S  + L+
Sbjct: 142 IDVSHNTQLTELDCHLNKK---ITKLDVTPQTQLTTLDCSFNKITELDV----SQNKLLN 194

Query: 259 YLHLLRVGIRDGSKLLQ-SMGSFPSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDD 317
            L+       D + + +  +     L  LD S N        T         L       
Sbjct: 195 RLNC------DTNNITKLDLNQNIQLTFLDCSSNKL------TEIDVTPLTQLTYFDCSV 242

Query: 318 ARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGS 377
             +       ++   ++  +  L         +   +D  L     L             
Sbjct: 243 NPLT------ELDVSTLSKLTTLHCIQ----TDLLEID--LTHNTQLIYFQAEGCRKIKE 290

Query: 378 LPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQ-IPISLEPLFNHS 436
           L   + + T L +LD  +      I+   L     +  L L++     + +S     +++
Sbjct: 291 LD--VTHNTQLYLLDCQAAG----ITELDLSQNPKLVYLYLNNTELTELDVS-----HNT 339

Query: 437 RLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSS 472
           +LK     N  I  +      +      L +   + 
Sbjct: 340 KLKSLSCVNAHIQ-DFSSVGKIP----ALNNNFEAE 370

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 98.2 bits (245), Expect = 2e-21
 Identities = 61/366 (16%), Positives = 111/366 (30%), Gaps = 66/366 (18%)

Query: 97  FTPFQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILSSLARLSSLT 156
                 L  L    N+I        L+ LS+ +NL  L    N   N  ++    L+ LT
Sbjct: 60  IEKLTGLTKLICTSNNI------TTLD-LSQNTNLTYLACDSNKLTNLDVTP---LTKLT 109

Query: 157 SLDLSANRLKGSIDIKGPKRLSRL----NNLKVFDLSGN-------LFNNSILSS--LAR 203
            L+   N+L   +D+     L+ L    N L   D+S N          N  ++   +  
Sbjct: 110 YLNCDTNKLT-KLDVSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKLDVTP 168

Query: 204 LSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLL 263
            + L +L    N++   +D         L  L+   N I   ++    +   +L++L   
Sbjct: 169 QTQLTTLDCSFNKIT-ELD---VSQNKLLNRLNCDTNNITKLDL----NQNIQLTFLDC- 219

Query: 264 RVGIRDGSKLLQ-SMGSFPSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDARIAL 322
                  +KL +  +     L   D S N  TE              L  L+     +  
Sbjct: 220 -----SSNKLTEIDVTPLTQLTYFDCSVNPLTE------LDVSTLSKLTTLHCIQTDL-- 266

Query: 323 NTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCL 382
                      +       L         +  +  +     L  L      +   L   L
Sbjct: 267 ---------LEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGIT-ELD--L 314

Query: 383 ANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFD 442
           +    L  L +++ +L    +   + H T ++ L   + H Q       +     L    
Sbjct: 315 SQNPKLVYLYLNNTEL----TELDVSHNTKLKSLSCVNAHIQ---DFSSVGKIPALNNNF 367

Query: 443 AENNEI 448
               + 
Sbjct: 368 EAEGQT 373

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 97.5 bits (243), Expect = 3e-21
 Identities = 81/496 (16%), Positives = 148/496 (29%), Gaps = 117/496 (23%)

Query: 129 SNLKMLNLVGNLFNNSILSSLARLSSLTSLDLSANRLKGSIDIKGPKRLSRLNNLKVFDL 188
            N             +   S  +L++LTSLD   + +    D+ G   + +L  L     
Sbjct: 18  DNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSIT---DMTG---IEKLTGLTKLIC 71

Query: 189 SGNLFNNSILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEVP 248
           + N      LS     ++L  L    N+L  ++D      L+ L  L+   N++   +V 
Sbjct: 72  TSNNITTLDLSQ---NTNLTYLACDSNKLT-NLD---VTPLTKLTYLNCDTNKLTKLDV- 123

Query: 249 QACSGLRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTETVTTTTQGFPHFK 308
                                           P L  L+ + N  TE          H  
Sbjct: 124 -----------------------------SQNPLLTYLNCARNTLTEID------VSHNT 148

Query: 309 SLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELH 368
            L EL         N    ++       +  L  S     N    LD  +     L  L+
Sbjct: 149 QLTELDCHL-----NKKITKLDVTPQTQLTTLDCSF----NKITELD--VSQNKLLNRLN 197

Query: 369 MADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPIS 428
              N++   L   L     L  LD SSN+    ++   +  LT +     S N    P++
Sbjct: 198 CDTNNIT-KLD--LNQNIQLTFLDCSSNK----LTEIDVTPLTQLTYFDCSVN----PLT 246

Query: 429 LEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQH 488
              +   S+L                          L  + L+              +  
Sbjct: 247 ELDVSTLSKLTTLHCIQT-----------------DLLEIDLT--------------HNT 275

Query: 489 DLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNN 548
            L Y +    +  +E     + +NT+L  L      +     L +  + +L  L ++   
Sbjct: 276 QLIYFQAEGCRKIKELD---VTHNTQLYLLDCQAAGIT---ELDLSQNPKLVYLYLNNTE 329

Query: 549 FQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAM 608
               + +      ++L   +     +      S G +  L     +  Q      E L  
Sbjct: 330 LT-ELDVS---HNTKLKSLSCVNAHIQ-DFS-SVGKIPALNNNFEAEGQTITMPKETLTN 383

Query: 609 GCVSLRSLALSNNNLE 624
              +  ++A+S + L+
Sbjct: 384 ---NSLTIAVSPDLLD 396

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 95.5 bits (238), Expect = 1e-20
 Identities = 75/454 (16%), Positives = 142/454 (31%), Gaps = 75/454 (16%)

Query: 360 PLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILS 419
           P  +      A  +++ +       + +L  LD  ++ +      + +  LT +  LI +
Sbjct: 16  PDDNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSI---TDMTGIEKLTGLTKLICT 72

Query: 420 DNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGIT 479
            N+    I+   L  ++ L     ++N++    +      TP  +L  L   +     + 
Sbjct: 73  SNN----ITTLDLSQNTNLTYLACDSNKLTNLDV------TPLTKLTYLNCDTNKLTKLD 122

Query: 480 FPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQL 539
             +       L Y+  +   + E      + +NT+L +L    +  +    L +    QL
Sbjct: 123 VSQN----PLLTYLNCARNTLTE----IDVSHNTQLTELDCHLNKKITK--LDVTPQTQL 172

Query: 540 RLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLT 599
             LD S N       L++      L   N   N +   +         L FLD S+N+LT
Sbjct: 173 TTLDCSFNKITE---LDVSQ-NKLLNRLNCDTNNIT-KLD--LNQNIQLTFLDCSSNKLT 225

Query: 600 GEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCS 659
            EI          L     S N L     S    L+ L  L       + EI   L+  +
Sbjct: 226 -EIDVT---PLTQLTYFDCSVNPLTELDVS---TLSKLTTLHCIQTDLL-EID--LTHNT 275

Query: 660 SLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNI 719
            L            ++   + + T L  +      I     L+  Q   L  L +++  +
Sbjct: 276 QLIYFQAEGCRKIKELD--VTHNTQLYLLDCQAAGIT---ELDLSQNPKLVYLYLNNTEL 330

Query: 720 SGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLS 779
           +  L                             +   L  L     H+  +    V  + 
Sbjct: 331 T-ELD--------------------------VSHNTKLKSLSCVNAHIQ-DFSS-VGKIP 361

Query: 780 QLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNN 813
            L+    A       +P +    N L +    + 
Sbjct: 362 ALNNNFEAEGQTI-TMPKETLTNNSLTIAVSPDL 394

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 91.7 bits (228), Expect = 2e-19
 Identities = 79/468 (16%), Positives = 132/468 (28%), Gaps = 51/468 (10%)

Query: 515 LRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNAL 574
                     +     +       L  LD   ++      +E    L+ LT    + N +
Sbjct: 20  FASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMTGIEK---LTGLTKLICTSNNI 76

Query: 575 DGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNL 634
             ++         L +L   +N+LT  +          L  L    N L     S     
Sbjct: 77  T-TLD--LSQNTNLTYLACDSNKLT-NLDVT---PLTKLTYLNCDTNKLTKLDVS---QN 126

Query: 635 TNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNH 694
             L +L    N    EI   +S  + L  L    N    K+   +   T L  +    N 
Sbjct: 127 PLLTYLNCARNTLT-EID--VSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNK 181

Query: 695 IEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNC 754
           I     L+  Q ++L  L+   NNI+  L      + +  +  S N    +L E      
Sbjct: 182 ITE---LDVSQNKLLNRLNCDTNNIT-KLDLN-QNIQLTFLDCSSN----KLTEIDVTPL 232

Query: 755 LTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNN 814
             L   D S N L   +   V  LS+L+ L     +L     I L    QL         
Sbjct: 233 TQLTYFDCSVNPLT-ELD--VSTLSKLTTLHCIQTDLLE---IDLTHNTQLIYFQAEGCR 286

Query: 815 LHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTY 874
               +     NT L+      + +   + S           +   L         +T   
Sbjct: 287 KIKELDVT-HNTQLYLLDCQAAGITELDLS-----------QNPKLVYLYLNNTELTELD 334

Query: 875 QGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLD 934
                 L S L      +       +G +  +     +          T +N     ++ 
Sbjct: 335 VSHNTKLKS-LSCVNAHIQD-FSS-VGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVS 391

Query: 935 LSYNKLSW---KIPYQLVELNTLAVFSVAYNNLSGKIPERAAQFATFN 979
                       I      +   A  ++ + NLS   P     F + N
Sbjct: 392 PDLLDQFGNPMNIEPGDGGVYDQATNTITWENLSTDNPAVTYTFTSEN 439

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 88.2 bits (219), Expect = 3e-18
 Identities = 67/435 (15%), Positives = 122/435 (28%), Gaps = 74/435 (17%)

Query: 509 LENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFN 568
           +E  T L +L   ++++     L +  +  L  L    N    ++ +     L++LT  N
Sbjct: 60  IEKLTGLTKLICTSNNITT---LDLSQNTNLTYLACDSNKLT-NLDV---TPLTKLTYLN 112

Query: 569 ISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMF 628
              N L             L +L+ + N LT EI          L  L    N       
Sbjct: 113 CDTNKL---TKLDVSQNPLLTYLNCARNTLT-EIDVS---HNTQLTELDCHLNKKIT--K 163

Query: 629 SRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHI 688
                 T L  L    N         +S+   L  L    N+++ K+   L     L  +
Sbjct: 164 LDVTPQTQLTTLDCSFNKITEL---DVSQNKLLNRLNCDTNNIT-KLD--LNQNIQLTFL 217

Query: 689 IMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKE 748
               N +     ++   L  L   D S N ++  L        +  +H  +      L E
Sbjct: 218 DCSSNKLTE---IDVTPLTQLTYFDCSVNPLT-ELDVS-TLSKLTTLHCIQT----DLLE 268

Query: 749 GTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLL 808
               +   L+            +   V   +QL  L      +     + L +  +L  L
Sbjct: 269 IDLTHNTQLIYFQAEGCRKIKELD--VTHNTQLYLLDCQAAGIT---ELDLSQNPKLVYL 323

Query: 809 DLSNNNLHGHIPSCFDN-TTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTT 867
            L+N  L     S      +L     +                                 
Sbjct: 324 YLNNTELTELDVSHNTKLKSLSCVNAHIQDFSSVGKI----------------------- 360

Query: 868 KSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNL 927
                         L+    +  + I  +P +      + T+ +S + L           
Sbjct: 361 ------------PALNNNFEAEGQTI-TMPKETLTNNSL-TIAVSPDLLDQFGNPMNIEP 406

Query: 928 RNIESLDLSYNKLSW 942
            +    D + N ++W
Sbjct: 407 GDGGVYDQATNTITW 421

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 82.0 bits (203), Expect = 2e-16
 Identities = 63/361 (17%), Positives = 117/361 (32%), Gaps = 57/361 (15%)

Query: 97  FTPFQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILSSLARLSSLT 156
            +    L  L+   N +        ++ +S  + L  L+   N         +   + LT
Sbjct: 123 VSQNPLLTYLNCARNTL------TEID-VSHNTQLTELDCHLN--KKITKLDVTPQTQLT 173

Query: 157 SLDLSANRLKGSIDIKGPKRLSRLNNLKVFDLSGNLFNNSILSSLARLSSLRSLLLYDNR 216
           +LD S N++   +D+      S+   L   +   N      L+       L  L    N+
Sbjct: 174 TLDCSFNKIT-ELDV------SQNKLLNRLNCDTNNITKLDLNQ---NIQLTFLDCSSNK 223

Query: 217 LEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGIRDGSKLLQS 276
           L   ID      L+ L   D S N +   +V    S L KL+ LH ++  + +       
Sbjct: 224 LT-EID---VTPLTQLTYFDCSVNPLTELDV----STLSKLTTLHCIQTDLLE-----ID 270

Query: 277 MGSFPSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDARI-ALNTSFLQIIGESMP 335
           +     L           + +        H   L  L    A I  L+ S         P
Sbjct: 271 LTHNTQLIYFQAEGCRKIKELD-----VTHNTQLYLLDCQAAGITELDLSQN-------P 318

Query: 336 SIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSS 395
            + YL L+N         LD  +     L+ L   +  ++      +  + +L     + 
Sbjct: 319 KLVYLYLNN----TELTELD--VSHNTKLKSLSCVNAHIQ-DFS-SVGKIPALNNNFEAE 370

Query: 396 NQLI----GSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAE 451
            Q I     +++++ L    S + L    N   I      +++ +   I     +  N  
Sbjct: 371 GQTITMPKETLTNNSLTIAVSPDLLDQFGNPMNIEPGDGGVYDQATNTITWENLSTDNPA 430

Query: 452 I 452
           +
Sbjct: 431 V 431

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 72.0 bits (177), Expect = 4e-13
 Identities = 60/310 (19%), Positives = 96/310 (30%), Gaps = 62/310 (20%)

Query: 633 NLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPK 692
           N  + +    E          S  + ++L  L   N+S++      +  LT L  +I   
Sbjct: 19  NFASEVAAAFEMQAT---DTISEEQLATLTSLDCHNSSITDMTG--IEKLTGLTKLICTS 73

Query: 693 NHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFF 752
           N+I     L+  Q   L  L    N ++ +L        +  ++   N    +L +    
Sbjct: 74  NNITT---LDLSQNTNLTYLACDSNKLT-NLD-VTPLTKLTYLNCDTN----KLTKLDVS 124

Query: 753 NCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSN 812
               L  L+ + N L   I   V   +QL+ L    N       + +    QL  LD S 
Sbjct: 125 QNPLLTYLNCARNTLT-EID--VSHNTQLTELDCHLNKKIT--KLDVTPQTQLTTLDCSF 179

Query: 813 NNLHGHIPSCFDN-TTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSIT 871
           N +     S       L+   NN                         +   D       
Sbjct: 180 NKITELDVSQNKLLNRLNCDTNN-------------------------ITKLDLNQ---- 210

Query: 872 YTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIE 931
                     L+ LD S N+L   I   +  LT++   + S N L     ST S L    
Sbjct: 211 -------NIQLTFLDCSSNKLT-EID--VTPLTQLTYFDCSVNPLTELDVSTLSKL---T 257

Query: 932 SLDLSYNKLS 941
           +L      L 
Sbjct: 258 TLHCIQTDLL 267

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 53.2 bits (128), Expect = 3e-07
 Identities = 24/205 (11%), Positives = 59/205 (28%), Gaps = 22/205 (10%)

Query: 97  FTPFQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILSSLARLSSLT 156
            +   +L +L     D+        ++ L+  + L      G          +   + L 
Sbjct: 250 VSTLSKLTTLHCIQTDL------LEID-LTHNTQLIYFQAEGC--RKIKELDVTHNTQLY 300

Query: 157 SLDLSANRLKGSIDIKGPKRLSRLNNLKVFDLSGNLFNNSILSSLARLSSLRSLLLYDNR 216
            LD  A  +   +D+      S+   L    L+       +   ++  + L+SL   +  
Sbjct: 301 LLDCQAAGIT-ELDL------SQNPKLVYLYLNNTEL-TEL--DVSHNTKLKSLSCVNAH 350

Query: 217 LEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGIRDGSKLLQS 276
           ++   D      +  L     +  +          +    ++    L     +   +   
Sbjct: 351 IQ---DFSSVGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQFGNPMNIEPG 407

Query: 277 MGSFPSLNTLDLSYNNFTETVTTTT 301
            G      T  +++ N +      T
Sbjct: 408 DGGVYDQATNTITWENLSTDNPAVT 432

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 98.1 bits (245), Expect = 2e-21
 Identities = 85/472 (18%), Positives = 159/472 (33%), Gaps = 66/472 (13%)

Query: 101 QQLESLDLRDNDIAGCVENEGLERLSR-LSNLKMLNLVGNLFNN----SILSSLARLSSL 155
             ++SLD++  ++     +     L   L   +++ L            I S+L    +L
Sbjct: 3   LDIQSLDIQCEEL----SDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPAL 58

Query: 156 TSLDLSANRLKGSIDIKGPKRLSRL-----NNLKVFDLSGNLFNN----SILSSLARLSS 206
             L+L +N L       G   + +        ++   L            + S+L  L +
Sbjct: 59  AELNLRSNELGDV----GVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPT 114

Query: 207 LRSLLLYDNRLEGSIDVKEF-----DSLSNLEELDMSYNEIDNFEVPQACSGLRK---LS 258
           L+ L L DN L G   ++       D    LE+L + Y  +         S LR      
Sbjct: 115 LQELHLSDNLL-GDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFK 173

Query: 259 YLHLLRVGIRD-GSKLLQSMGSFP--SLNTLDLSYNNFT-ETVTTTTQGFPHFKSLKELY 314
            L +    I + G ++L          L  L L     T +             SL+EL 
Sbjct: 174 ELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELA 233

Query: 315 MDDARIALNTSFLQIIGESM----PSIQYLSLSNSSVSNNS-RTLDQGLCPLVHLQELHM 369
           +   ++      +  +   +      ++ L +    ++      L + L     L+EL +
Sbjct: 234 LGSNKL--GDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSL 291

Query: 370 ADNDLRGSLPWCLANM-----TSLRILDVSSNQLIGSIS----SSPLIHLTSIEDLILSD 420
           A N+L       L          L  L V S     +      SS L     + +L +S+
Sbjct: 292 AGNELGDEGARLLCETLLEPGCQLESLWVKSCS-FTAACCSHFSSVLAQNRFLLELQISN 350

Query: 421 NHFQ----IPISLEPLFNHSRLKIFDAENNEINAEIIE--SHSLTTPNFQLQSLLLSS-- 472
           N  +      +        S L++    + +++       + +L   N  L+ L LS+  
Sbjct: 351 NRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLA-NHSLRELDLSNNC 409

Query: 473 -GYRDGITFPKFL-YNQHDLEYVRLSHIKMNEEFPNWL---LENNTKLRQLS 519
            G    +   + +      LE + L  I  +EE  + L    ++   LR +S
Sbjct: 410 LGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVIS 461

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 95.0 bits (237), Expect = 1e-20
 Identities = 75/414 (18%), Positives = 140/414 (33%), Gaps = 68/414 (16%)

Query: 94  ASLFTPFQQLESLDLRDNDIAGCVENEGLERLSRL-----SNLKMLNLVGNLFNN----S 144
           +S       L  L+LR N++     + G+  + +        ++ L+L            
Sbjct: 49  SSALRVNPALAELNLRSNEL----GDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGV 104

Query: 145 ILSSLARLSSLTSLDLSANRLKGSIDIKGPKRLSRL-----NNLKVFDLSGNLFNN---- 195
           + S+L  L +L  L LS N L  +    G + L          L+   L     +     
Sbjct: 105 LSSTLRTLPTLQELHLSDNLLGDA----GLQLLCEGLLDPQCRLEKLQLEYCSLSAASCE 160

Query: 196 SILSSLARLSSLRSLLLYDNRLEGSIDVKEF-----DSLSNLEELDMSYNEIDNFEVPQA 250
            + S L      + L + +N +     V+       DS   LE L +    + +      
Sbjct: 161 PLASVLRAKPDFKELTVSNNDI-NEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDL 219

Query: 251 CSGLRK---LSYLHLLRVGIRD-GSKLLQSMGSFP--SLNTLDLSYNNFTET-VTTTTQG 303
           C  +     L  L L    + D G   L      P   L TL +     T        + 
Sbjct: 220 CGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRV 279

Query: 304 FPHFKSLKELYM------DDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNS-RTLDQ 356
               +SLKEL +      D+    L     + + E    ++ L + + S +         
Sbjct: 280 LRAKESLKELSLAGNELGDEGARLL----CETLLEPGCQLESLWVKSCSFTAACCSHFSS 335

Query: 357 GLCPLVHLQELHMADNDLRGSLPWCLA-----NMTSLRILDVSSNQL----IGSISSSPL 407
            L     L EL +++N L  +    L        + LR+L ++   +      S++++ L
Sbjct: 336 VLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAAT-L 394

Query: 408 IHLTSIEDLILSDNHF------QIPISLEPLFNHSRLKIFDAENNEINAEIIES 455
           +   S+ +L LS+N        Q+  S+        L+     +   + E+ + 
Sbjct: 395 LANHSLRELDLSNNCLGDAGILQLVESVR--QPGCLLEQLVLYDIYWSEEMEDR 446

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 94.6 bits (236), Expect = 2e-20
 Identities = 92/486 (18%), Positives = 173/486 (35%), Gaps = 74/486 (15%)

Query: 182 NLKVFDLSGNLFNNSILSSLAR-LSSLRSLLLYDNRLEGSIDVKEFDSL----SNLEELD 236
           +++  D+     +++  + L   L   + + L D  L      K+  S       L EL+
Sbjct: 4   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGL-TEARCKDISSALRVNPALAELN 62

Query: 237 MSYNEIDNFEVPQACSGLR----KLSYLHLLRVGIRD-GSKLLQSM-GSFPSLNTLDLSY 290
           +  NE+ +  V     GL+    K+  L L    +   G  +L S   + P+L  L LS 
Sbjct: 63  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSD 122

Query: 291 NNFTET-VTTTTQGFPH-FKSLKELYMDDARIALNTSFLQIIGE---SMPSIQYLSLSNS 345
           N   +  +    +G       L++L ++   +  + +  + +     + P  + L++SN+
Sbjct: 123 NLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSL--SAASCEPLASVLRAKPDFKELTVSNN 180

Query: 346 SVSNNS-RTLDQGL-CPLVHLQELHMADNDLR----GSLPWCLANMTSLRILDVSSNQL- 398
            ++    R L QGL      L+ L +    +       L   +A+  SLR L + SN+L 
Sbjct: 181 DINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLG 240

Query: 399 ---IGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLF----NHSRLKIFDAENNEINAE 451
              +  +    L   + +  L + +           L         LK      NE+  E
Sbjct: 241 DVGMAELCPGLLHPSSRLRTLWIWECGIT-AKGCGDLCRVLRAKESLKELSLAGNELGDE 299

Query: 452 IIE--SHSLTTPNFQLQSLLLSS---GYRDGITFPKFLYNQHDLEYVRLSHIKMNEE--- 503
                  +L  P  QL+SL + S          F   L     L  +++S+ ++ +    
Sbjct: 300 GARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVR 359

Query: 504 -FPNWLLENNTKLRQLSLVNDSL----VGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIG 558
                L +  + LR L L +  +           + ++  LR LD+S N         +G
Sbjct: 360 ELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNC--------LG 411

Query: 559 DILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLAL 618
           D           +  L  S+         L+ L L +   + E           L++L  
Sbjct: 412 D---------AGILQLVESVRQ---PGCLLEQLVLYDIYWSEE-------MEDRLQALEK 452

Query: 619 SNNNLE 624
              +L 
Sbjct: 453 DKPSLR 458

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 80.8 bits (200), Expect = 6e-16
 Identities = 90/480 (18%), Positives = 157/480 (32%), Gaps = 108/480 (22%)

Query: 230 SNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGIRDGS--KLLQSMGSFPSLNTLD 287
            +++ LD+   E+ +    +    L++   + L   G+ +     +  ++   P+L  L+
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62

Query: 288 LSYNNFTETVTTTTQGFPHFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSV 347
           L  N   +              +  +             LQ +      IQ LSL N  +
Sbjct: 63  LRSNELGD------------VGVHCV-------------LQGLQTPSCKIQKLSLQNCCL 97

Query: 348 SNNS-RTLDQGLCPLVHLQELHMADNDLRGSLPWCLANM-----TSLRILDVSSNQLIGS 401
           +      L   L  L  LQELH++DN L  +    L          L  L +     + +
Sbjct: 98  TGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCS-LSA 156

Query: 402 IS----SSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHS 457
            S    +S L      ++L +S+N                        NE    ++    
Sbjct: 157 ASCEPLASVLRAKPDFKELTVSNNDI----------------------NEAGVRVL-CQG 193

Query: 458 LTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQ 517
           L     QL++L L S    G+T               L  I          + +   LR+
Sbjct: 194 LKDSPCQLEALKLESC---GVT---------SDNCRDLCGI----------VASKASLRE 231

Query: 518 LSLVNDSL--VGPFRL---PIHSHKQLRLLDVSKNNFQGHIPLEIGDIL---SRLTVFNI 569
           L+L ++ L  VG   L    +H   +LR L + +         ++  +L     L   ++
Sbjct: 232 LALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSL 291

Query: 570 SMNALDGS----IPSSFGNMNF-LQFLDLSNNQLTGEIPEHLA---MGCVSLRSLALSNN 621
           + N L       +  +       L+ L + +   T     H +        L  L +SNN
Sbjct: 292 AGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNN 351

Query: 622 NLEG---HMFSR--NFNLTNLIWLQLEGNHF----VGEIPQSLSKCSSLQGLFLSNNSLS 672
            LE        +      + L  L L            +  +L    SL+ L LSNN L 
Sbjct: 352 RLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG 411

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 79.6 bits (197), Expect = 1e-15
 Identities = 77/467 (16%), Positives = 156/467 (33%), Gaps = 83/467 (17%)

Query: 308 KSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNS-RTLDQGLCPLVHLQE 366
             ++ L +    +  + +    +   +   Q + L +  ++    + +   L     L E
Sbjct: 3   LDIQSLDIQCEEL--SDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAE 60

Query: 367 LHMADNDLRGSLPWCLANM-----TSLRILDVSSNQL----IGSISSSPLIHLTSIEDLI 417
           L++  N+L      C+          ++ L + +  L     G +SS+ L  L ++++L 
Sbjct: 61  LNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSST-LRTLPTLQELH 119

Query: 418 LSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSS---GY 474
           LSDN                         +   +++    L  P  +L+ L L       
Sbjct: 120 LSDNLLG----------------------DAGLQLL-CEGLLDPQCRLEKLQLEYCSLSA 156

Query: 475 RDGITFPKFLYNQHDLEYVRLSHIKMNEE----FPNWLLENNTKLRQLSLVNDSL----V 526
                    L  + D + + +S+  +NE         L ++  +L  L L +  +     
Sbjct: 157 ASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNC 216

Query: 527 GPFRLPIHSHKQLRLLDVSKNNFQG----HIPLEIGDILSRLTVFNISMNALD----GSI 578
                 + S   LR L +  N         +   +    SRL    I    +     G +
Sbjct: 217 RDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDL 276

Query: 579 PSSFGNMNFLQFLDLSNNQLTGE----IPEHLAMGCVSLRSLALSNNNLE-------GHM 627
                    L+ L L+ N+L  E    + E L      L SL + + +           +
Sbjct: 277 CRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSV 336

Query: 628 FSRNFNLTNLIWLQLEGNHFVGEIPQSLSK-----CSSLQGLFLSNNSLSGK----IPRW 678
            ++N     L+ LQ+  N       + L +      S L+ L+L++  +S      +   
Sbjct: 337 LAQN---RFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAAT 393

Query: 679 LGNLTVLRHIIMPKNHIEGPIPLEFCQL-----RILQILDISDNNIS 720
           L     LR + +  N +     L+  +       +L+ L + D   S
Sbjct: 394 LLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWS 440

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 73.8 bits (182), Expect = 1e-13
 Identities = 82/488 (16%), Positives = 141/488 (28%), Gaps = 109/488 (22%)

Query: 386 TSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLF----NHSRLKIF 441
             ++ LD+   +L  +  +  L  L   + + L D         + +      +  L   
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLT-EARCKDISSALRVNPALAEL 61

Query: 442 DAENNEINAEIIE--SHSLTTPNFQLQSLLLSS---GYRDGITFPKFLYNQHDLEYVRLS 496
           +  +NE+    +      L TP+ ++Q L L +              L     L+ + LS
Sbjct: 62  NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLS 121

Query: 497 HIKMNEE----FPNWLLENNTKLRQLSLVNDSL----VGPFRLPIHSHKQLRLLDVSKNN 548
              + +         LL+   +L +L L   SL      P    + +    + L VS N+
Sbjct: 122 DNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND 181

Query: 549 FQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLA- 607
                   +   L                      +   L+ L L +  +T +    L  
Sbjct: 182 INEAGVRVLCQGLKD--------------------SPCQLEALKLESCGVTSDNCRDLCG 221

Query: 608 --MGCVSLRSLALSNNNL--EGHMF---SRNFNLTNLIWLQLEGNHF----VGEIPQSLS 656
                 SLR LAL +N L   G            + L  L +          G++ + L 
Sbjct: 222 IVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLR 281

Query: 657 KCSSLQGLFLSNNSLSGKIPRWLGNL-----TVLRHIIMPKNHIEGPIPLEFCQ------ 705
              SL+ L L+ N L  +  R L          L  + +             C       
Sbjct: 282 AKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTA----ACCSHFSSVL 337

Query: 706 --LRILQILDISDNNISGS----------LPSCYDFVCIEQVHLSKNMLHGQLKEGTFF- 752
              R L  L IS+N +  +           P       +  + L+   +           
Sbjct: 338 AQNRFLLELQISNNRLEDAGVRELCQGLGQPGS----VLRVLWLADCDVSD---SSCSSL 390

Query: 753 -----NCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQL 807
                   +L  LDLS N L         G+ QL    +                  L+ 
Sbjct: 391 AATLLANHSLRELDLSNNCLG------DAGILQLV-ESVRQPG------------CLLEQ 431

Query: 808 LDLSNNNL 815
           L L +   
Sbjct: 432 LVLYDIYW 439

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 71.9 bits (177), Expect = 4e-13
 Identities = 66/295 (22%), Positives = 107/295 (36%), Gaps = 40/295 (13%)

Query: 79  LDLSQTHRGEY--WYLNASLFTPFQQLESLDLRDNDI--AGCVENEGL-ERLSRLSNLKM 133
           L +S     E     L   L     QLE+L L    +    C     L   ++  ++L+ 
Sbjct: 175 LTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNC---RDLCGIVASKASLRE 231

Query: 134 LNLVGNLFNNSILSSLAR-----LSSLTSLDLSANRLKGSIDIKGPKRLSRL----NNLK 184
           L L  N   +  ++ L        S L +L +        I  KG   L R+     +LK
Sbjct: 232 LALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWEC----GITAKGCGDLCRVLRAKESLK 287

Query: 185 VFDLSGNLFNNSILSSLARL-----SSLRSLLLYDNRLEGSIDVKEFDSL----SNLEEL 235
              L+GN   +     L          L SL +       +     F S+      L EL
Sbjct: 288 ELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSF-TAACCSHFSSVLAQNRFLLEL 346

Query: 236 DMSYNEIDNFEVPQACSGLR----KLSYLHLLRVGIRD--GSKLLQSMGSFPSLNTLDLS 289
            +S N +++  V + C GL      L  L L    + D   S L  ++ +  SL  LDLS
Sbjct: 347 QISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLS 406

Query: 290 YNNFTET-VTTTTQGFPHFKS-LKELYMDDARIALNT-SFLQIIGESMPSIQYLS 341
            N   +  +    +        L++L + D   +      LQ + +  PS++ +S
Sbjct: 407 NNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVIS 461

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 70.0 bits (172), Expect = 2e-12
 Identities = 76/454 (16%), Positives = 139/454 (30%), Gaps = 94/454 (20%)

Query: 537 KQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALD----GSIPSSFGNMNFLQFLD 592
             ++ LD+           E+  +L +  V  +    L       I S+      L  L+
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62

Query: 593 LSNNQLTGE----IPEHLAMGCVSLRSLALSNNNLE-------GHMFSRNFNLTNLIWLQ 641
           L +N+L       + + L      ++ L+L N  L                    L  L 
Sbjct: 63  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTL---PTLQELH 119

Query: 642 LEGNHFVGEIPQSLSK-----CSSLQGLFLSNNSLSGK----IPRWLGNLTVLRHIIMPK 692
           L  N       Q L +        L+ L L   SLS      +   L      + + +  
Sbjct: 120 LSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSN 179

Query: 693 NHIEGPIPLEFCQL-----RILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLK 747
           N I        CQ        L+ L +    ++    +C D   I    ++         
Sbjct: 180 NDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSD--NCRDLCGI----VASKA------ 227

Query: 748 EGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQL 807
                   +L  L L  N L         G+++L   +L  ++             +L+ 
Sbjct: 228 --------SLRELALGSNKLGD------VGMAELCPGLLHPSS-------------RLRT 260

Query: 808 LDLSNNNLH----GHIPSCF-DNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILES 862
           L +    +     G +        +L E    G+ L       +    ++   +   LES
Sbjct: 261 LWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQ---LES 317

Query: 863 FDFTTKSITYTYQGRVPSLLSG------LDLSCNRLIGHIPPQIG-----NLTKIQTLNL 911
               + S T        S+L+       L +S NRL      ++        + ++ L L
Sbjct: 318 LWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWL 377

Query: 912 SHNNL----AGPIPSTFSNLRNIESLDLSYNKLS 941
           +  ++       + +T     ++  LDLS N L 
Sbjct: 378 ADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG 411

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 93.9 bits (234), Expect = 5e-21
 Identities = 53/240 (22%), Positives = 80/240 (33%), Gaps = 38/240 (15%)

Query: 559 DILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLAL 618
            I +      +  N +     +SF     L  L L +N L   I      G   L  L L
Sbjct: 29  GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDL 87

Query: 619 SNNN----LEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQ-SLSKCSSLQGLFLSNNSLSG 673
           S+N     ++   F     L  L  L L+      E+        ++LQ L+L +N+L  
Sbjct: 88  SDNAQLRSVDPATFH---GLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQ- 142

Query: 674 KIP-RWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCI 732
            +P     +L  L H+ +  N I       F  L  L  L +  N ++            
Sbjct: 143 ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA------------ 190

Query: 733 EQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRV-DGLSQLSYLILAHNNL 791
                        +    F +   LM L L  N+L+  +P      L  L YL L  N  
Sbjct: 191 ------------HVHPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 91.6 bits (228), Expect = 2e-20
 Identities = 52/235 (22%), Positives = 81/235 (34%), Gaps = 36/235 (15%)

Query: 588 LQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNL---EGHMFSRNFNLTNLIWLQLEG 644
            Q + L  N+++  +P      C +L  L L +N L   +   F+    L  L  L L  
Sbjct: 34  SQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAAFT---GLALLEQLDLSD 89

Query: 645 NHFVGEIPQS-LSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLE- 702
           N  +  +  +       L  L L    L    P     L  L+++ +  N ++  +P + 
Sbjct: 90  NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA-LPDDT 148

Query: 703 FCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDL 762
           F  L  L  L +  N IS                         + E  F    +L  L L
Sbjct: 149 FRDLGNLTHLFLHGNRIS------------------------SVPERAFRGLHSLDRLLL 184

Query: 763 SYNHLNGNIPDRV-DGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLH 816
             N +  ++       L +L  L L  NNL       L  L  LQ L L++N   
Sbjct: 185 HQNRVA-HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 87.0 bits (216), Expect = 8e-19
 Identities = 63/284 (22%), Positives = 107/284 (37%), Gaps = 42/284 (14%)

Query: 129 SNLKMLNLVGNLFNNSILSSLARLSSLTSLDLSANRLKGSIDIKGPKRLSRLNNLKVFDL 188
           +  + + L GN  ++   +S     +LT L L +N L   ID       + L  L+  DL
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RID---AAAFTGLALLEQLDL 87

Query: 189 SGNLFNNSILSSL-----ARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEID 243
           S    +N+ L S+       L  L +L L    L+  +    F  L+ L+ L +  N + 
Sbjct: 88  S----DNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQ 142

Query: 244 NFEVPQACSGLRKLSYLHLLRVGIRDGSKLLQSM--GSF---PSLNTLDLSYNNFTETVT 298
                     L  L++L L           + S+   +F    SL+ L L  N       
Sbjct: 143 ALP-DDTFRDLGNLTHLFL-------HGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHP 194

Query: 299 TTTQGFPHFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGL 358
                F     L  LY+    +   ++        + ++QYL L     ++N    D   
Sbjct: 195 HA---FRDLGRLMTLYLFANNL---SALPTEALAPLRALQYLRL-----NDNPWVCDCRA 243

Query: 359 CPLVH-LQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGS 401
            PL   LQ+   + +++  SLP  LA      +  +++N L G 
Sbjct: 244 RPLWAWLQKFRGSSSEVPCSLPQRLAGRD---LKRLAANDLQGC 284

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 85.4 bits (212), Expect = 3e-18
 Identities = 53/235 (22%), Positives = 87/235 (37%), Gaps = 56/235 (23%)

Query: 92  LNASLFTPFQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILSSL-- 149
           + A+ F   + L  L L  N +A  ++      L+ L  L       +L +N+ L S+  
Sbjct: 47  VPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQL-------DLSDNAQLRSVDP 98

Query: 150 ---ARLSSLTSLDLSANRLKGSIDIKGPKRLSRLNNLKVFDLSGNLFNNSILSSLARLSS 206
                L  L +L L    L+                    +L   LF          L++
Sbjct: 99  ATFHGLGRLHTLHLDRCGLQ--------------------ELGPGLFRG--------LAA 130

Query: 207 LRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVG 266
           L+ L L DN L+ ++    F  L NL  L +  N I +    +A  GL  L  L L    
Sbjct: 131 LQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVP-ERAFRGLHSLDRLLL---- 184

Query: 267 IRDGSKLLQ-SMGSF---PSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDD 317
               +++      +F     L TL L  NN +      T+     ++L+ L ++D
Sbjct: 185 --HQNRVAHVHPHAFRDLGRLMTLYLFANNLS---ALPTEALAPLRALQYLRLND 234

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 83.9 bits (208), Expect = 9e-18
 Identities = 48/211 (22%), Positives = 81/211 (38%), Gaps = 12/211 (5%)

Query: 539 LRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQL 598
            + + +  N    H+P         LT+  +  N L     ++F  +  L+ LDLS+N  
Sbjct: 34  SQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92

Query: 599 TGEIPEHLAMGCVSLRSLALSNNNL---EGHMFSRNFNLTNLIWLQLEGNHFVGEIP-QS 654
              +      G   L +L L    L      +F     L  L +L L+ N     +P  +
Sbjct: 93  LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFR---GLAALQYLYLQDNALQ-ALPDDT 148

Query: 655 LSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDI 714
                +L  LFL  N +S    R    L  L  +++ +N +    P  F  L  L  L +
Sbjct: 149 FRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYL 208

Query: 715 SDNNISGSLPSC--YDFVCIEQVHLSKNMLH 743
             NN+S +LP+        ++ + L+ N   
Sbjct: 209 FANNLS-ALPTEALAPLRALQYLRLNDNPWV 238

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 82.3 bits (204), Expect = 3e-17
 Identities = 48/198 (24%), Positives = 75/198 (37%), Gaps = 11/198 (5%)

Query: 650 EIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRIL 709
            +P  +   ++ Q +FL  N +S            L  + +  N +       F  L +L
Sbjct: 25  AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALL 82

Query: 710 QILDISDNNISGSLPSC--YDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHL 767
           + LD+SDN    S+     +    +  +HL +  L  +L  G F     L  L L  N L
Sbjct: 83  EQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNAL 141

Query: 768 NGNIPDRV-DGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDN- 825
              +PD     L  L++L L  N +          L+ L  L L  N +    P  F + 
Sbjct: 142 Q-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDL 200

Query: 826 ---TTLHERYNNGSSLQP 840
               TL+   NN S+L  
Sbjct: 201 GRLMTLYLFANNLSALPT 218

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 72.7 bits (179), Expect = 5e-14
 Identities = 47/242 (19%), Positives = 73/242 (30%), Gaps = 42/242 (17%)

Query: 756 TLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNL 815
               + L  N ++            L+ L L  N L          L  L+ LDLS+N  
Sbjct: 33  ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92

Query: 816 HGHIPS-CFDN----TTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSI 870
              +    F       TLH        L P                      F       
Sbjct: 93  LRSVDPATFHGLGRLHTLHLDRCGLQELGP--------------------GLFRGLAA-- 130

Query: 871 TYTYQGRVPSLLSGLDLSCNRLIGHIPPQI-GNLTKIQTLNLSHNNLAGPIPSTFSNLRN 929
                      L  L L  N  +  +P     +L  +  L L  N ++      F  L +
Sbjct: 131 -----------LQYLYLQDNA-LQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHS 178

Query: 930 IESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQFATFNESSY-EGNPF 988
           ++ L L  N+++   P+   +L  L    +  NNLS  +P  A       +      NP+
Sbjct: 179 LDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDNPW 237

Query: 989 LC 990
           +C
Sbjct: 238 VC 239

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 69.6 bits (171), Expect = 6e-13
 Identities = 38/172 (22%), Positives = 58/172 (33%), Gaps = 34/172 (19%)

Query: 91  YLNASLFTPFQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILSSLA 150
            ++ + F    +L +L L                L  L                      
Sbjct: 95  SVDPATFHGLGRLHTLHLDRC------------GLQELGP----------------GLFR 126

Query: 151 RLSSLTSLDLSANRLKGSIDIKGPKRLSRLNNLKVFDLSGNLFNNSILSSLARLSSLRSL 210
            L++L  L L  N L+ ++          L NL    L GN  ++    +   L SL  L
Sbjct: 127 GLAALQYLYLQDNALQ-ALP---DDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRL 182

Query: 211 LLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHL 262
           LL+ NR+   +    F  L  L  L +  N +      +A + LR L YL L
Sbjct: 183 LLHQNRVA-HVHPHAFRDLGRLMTLYLFANNLSALP-TEALAPLRALQYLRL 232

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 65.0 bits (159), Expect = 2e-11
 Identities = 49/290 (16%), Positives = 79/290 (27%), Gaps = 85/290 (29%)

Query: 335 PSIQYLSLSNSSVSNNSRTLDQG-LCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDV 393
            + Q + L      N    +         +L  L +  N L          +  L  LD+
Sbjct: 32  AASQRIFLHG----NRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDL 87

Query: 394 SSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEII 453
           S N  + S+  +    L  +  L L     Q    L P        +F            
Sbjct: 88  SDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ---ELGP-------GLFR----------- 126

Query: 454 ESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNT 513
               L      LQ L L               N        L  +      P+    +  
Sbjct: 127 ---GLA----ALQYLYLQ-------------DNA-------LQAL------PDDTFRDLG 153

Query: 514 KLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNA 573
            L  L L                 ++    V +  F+G         L  L    +  N 
Sbjct: 154 NLTHLFL--------------HGNRIS--SVPERAFRG---------LHSLDRLLLHQNR 188

Query: 574 LDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNL 623
           +    P +F ++  L  L L  N L+  +P        +L+ L L++N  
Sbjct: 189 VAHVHPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 59.2 bits (144), Expect = 2e-09
 Identities = 35/200 (17%), Positives = 58/200 (29%), Gaps = 41/200 (20%)

Query: 779 SQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDN----TTLHERYNN 834
           +    + L  N +             L +L L +N L     + F        L    N 
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 835 G-SSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLI 893
              S+ P                     +F    +             L  L L     +
Sbjct: 92  QLRSVDP--------------------ATFHGLGR-------------LHTLHLDRCG-L 117

Query: 894 GHIPPQI-GNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELN 952
             + P +   L  +Q L L  N L      TF +L N+  L L  N++S         L+
Sbjct: 118 QELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLH 177

Query: 953 TLAVFSVAYNNLSGKIPERA 972
           +L    +  N ++  +   A
Sbjct: 178 SLDRLLLHQNRVA-HVHPHA 196

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 48.8 bits (117), Expect = 4e-06
 Identities = 25/100 (25%), Positives = 39/100 (39%), Gaps = 10/100 (10%)

Query: 878 VPSLLSGLDLSCNRLIGHIPPQI-GNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLS 936
           +P+    + L  NR I H+P         +  L L  N LA    + F+ L  +E LDLS
Sbjct: 30  IPAASQRIFLHGNR-ISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLS 88

Query: 937 YNKLSWKIP----YQLVELNTLAVFSVAYNNLSGKIPERA 972
            N     +     + L  L+TL    +    L  ++    
Sbjct: 89  DNAQLRSVDPATFHGLGRLHTL---HLDRCGLQ-ELGPGL 124

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 93.9 bits (234), Expect = 9e-21
 Identities = 70/368 (19%), Positives = 114/368 (30%), Gaps = 85/368 (23%)

Query: 587 FLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNN---LEGHMFSRNFNLTNLIWLQLE 643
            L+ +  S+  L   +P+ ++        L L NN+   L    F     L +L  L L 
Sbjct: 34  HLRVVQCSDLGLK-AVPKEIS---PDTTLLDLQNNDISELRKDDFK---GLQHLYALVLV 86

Query: 644 GNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEF 703
            N       ++ S    LQ L++S N L  +IP  L           P +          
Sbjct: 87  NNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNL-----------PSS---------- 124

Query: 704 CQLRILQILDISDNNISGSLP--SCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILD 761
                L  L I DN I   +P         +  + +  N L     E   F+ L L  L 
Sbjct: 125 -----LVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLR 178

Query: 762 LSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPS 821
           +S   L   IP  +     L+ L L HN ++      L R ++L  L L +N +      
Sbjct: 179 ISEAKLT-GIPKDL--PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENG 235

Query: 822 CFDN-TTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPS 880
                 TL E + + + L         +                                
Sbjct: 236 SLSFLPTLRELHLDNNKLSRVPAGLPDL-------------------------------K 264

Query: 881 LLSGLDLSCNRLIGHIPPQI-------GNLTKIQTLNLSHNNLAGPI--PSTFSNLRNIE 931
           LL  + L  N  I  +                   ++L +N +      P+TF  + +  
Sbjct: 265 LLQVVYLHTNN-ITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRL 323

Query: 932 SLDLSYNK 939
           ++     K
Sbjct: 324 AIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 86.6 bits (215), Expect = 2e-18
 Identities = 47/256 (18%), Positives = 85/256 (33%), Gaps = 30/256 (11%)

Query: 537 KQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNN 596
           ++L+ L +SKN+    IP    ++ S L    I  N +       F  +  +  +++  N
Sbjct: 102 RKLQKLYISKNHLV-EIP---PNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGN 157

Query: 597 QLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQ-SL 655
            L     E  A   + L  L +S   L   +         L  L L+ N     I    L
Sbjct: 158 PLENSGFEPGAFDGLKLNYLRISEAKLT-GIPKDLP--ETLNELHLDHNKIQ-AIELEDL 213

Query: 656 SKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDIS 715
            + S L  L L +N +       L  L  LR + +  N +   +P     L++LQ++ + 
Sbjct: 214 LRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSR-VPAGLPDLKLLQVVYLH 272

Query: 716 DNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHL-NGNIPDR 774
            NNI+                +  N        G          + L  N +    +   
Sbjct: 273 TNNIT---------------KVGVNDFCPV---GFGVKRAYYNGISLFNNPVPYWEVQPA 314

Query: 775 V-DGLSQLSYLILAHN 789
               ++    +   + 
Sbjct: 315 TFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 85.8 bits (213), Expect = 4e-18
 Identities = 61/351 (17%), Positives = 112/351 (31%), Gaps = 84/351 (23%)

Query: 129 SNLKMLNLVGNLFNNSILSSLARLSSLTSLDLSANRLKGSIDIKGPKRLSRLNNLKVFDL 188
            +  +L+L  N  +         L  L +L L  N++   I     K  S L  L+   +
Sbjct: 54  PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKIS-KIH---EKAFSPLRKLQKLYI 109

Query: 189 SGNLFNNSILSSLAR--LSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFE 246
           S N      L  +     SSL  L ++DNR+   +    F  L N+  ++M  N ++N  
Sbjct: 110 SKNH-----LVEIPPNLPSSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSG 163

Query: 247 V-PQACSGLRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTETVTTTTQGFP 305
             P A  GL                            LN L +S    T           
Sbjct: 164 FEPGAFDGL---------------------------KLNYLRISEAKLTGIPKDL----- 191

Query: 306 HFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQ 365
             ++L EL++D  +I               +I+   L                     L 
Sbjct: 192 -PETLNELHLDHNKIQ--------------AIELEDLLR----------------YSKLY 220

Query: 366 ELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQ- 424
            L +  N +R      L+ + +LR L + +N+L   + +  L  L  ++ + L  N+   
Sbjct: 221 RLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAG-LPDLKLLQVVYLHTNNITK 278

Query: 425 IPI----SLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLS 471
           + +     +      +        NN +    ++  +         ++   
Sbjct: 279 VGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATF-RCVTDRLAIQFG 328

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 85.5 bits (212), Expect = 6e-18
 Identities = 58/337 (17%), Positives = 104/337 (30%), Gaps = 65/337 (19%)

Query: 50  LDWVDDEGATDC-----CQWERVSCNNTM---------GRVVVLDLSQTHRGEYWYLNAS 95
           LD +    +  C     C    V C++               +LDL      E   L   
Sbjct: 16  LDSLPPTYSAMCPFGCHCHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISE---LRKD 72

Query: 96  LFTPFQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGN---------------- 139
            F   Q L +L L +N I+  +  +     S L  L+ L +  N                
Sbjct: 73  DFKGLQHLYALVLVNNKISK-IHEKAF---SPLRKLQKLYISKNHLVEIPPNLPSSLVEL 128

Query: 140 -LFNNSILS----SLARLSSLTSLDLSANRLKGSIDIKGPKRLSRLNNLKVFDLSGNLFN 194
            + +N I        + L ++  +++  N L+ S              L    +S     
Sbjct: 129 RIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGF---EPGAFDGLKLNYLRISEAKL- 184

Query: 195 NSILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQACSGL 254
             I   L    +L  L L  N+++ +I++++    S L  L + +N+I   E   + S L
Sbjct: 185 TGIPKDL--PETLNELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQIRMIE-NGSLSFL 240

Query: 255 RKLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTE---TVTTTTQGFPHFKSLK 311
             L  LHL    +      L  +     L  + L  NN T+                   
Sbjct: 241 PTLRELHLDNNKLSRVPAGLPDL---KLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYN 297

Query: 312 ELYMDDARIALNT----SFLQIIGESMPSIQYLSLSN 344
            + + +  +        +F       +     +   N
Sbjct: 298 GISLFNNPVPYWEVQPATF-----RCVTDRLAIQFGN 329

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 82.4 bits (204), Expect = 6e-17
 Identities = 53/247 (21%), Positives = 93/247 (37%), Gaps = 25/247 (10%)

Query: 732 IEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRV-DGLSQLSYLILAHNN 790
              + L  N +  +L++  F     L  L L  N ++  I ++    L +L  L ++ N+
Sbjct: 56  TTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKIS-KIHEKAFSPLRKLQKLYISKNH 113

Query: 791 LEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDN----TTLHERYNNGSSLQPFETSFV 846
           L  E+P  L   + L  L + +N +       F        +    N   +      +F 
Sbjct: 114 LV-EIPPNL--PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFD 170

Query: 847 IMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQI-GNLTK 905
            +           L     +   +T      +P  L+ L L  N+ I  I  +     +K
Sbjct: 171 GLK----------LNYLRISEAKLT-GIPKDLPETLNELHLDHNK-IQAIELEDLLRYSK 218

Query: 906 IQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLS 965
           +  L L HN +      + S L  +  L L  NKLS ++P  L +L  L V  +  NN++
Sbjct: 219 LYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT 277

Query: 966 GKIPERA 972
            K+    
Sbjct: 278 -KVGVND 283

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 65.0 bits (159), Expect = 3e-11
 Identities = 61/331 (18%), Positives = 112/331 (33%), Gaps = 65/331 (19%)

Query: 280 FPSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDARIAL--NTSFLQIIGESMPSI 337
            P    LDL  N+ +E        F   + L  L + + +I+     +F       +  +
Sbjct: 53  SPDTTLLDLQNNDISEL---RKDDFKGLQHLYALVLVNNKISKIHEKAF-----SPLRKL 104

Query: 338 QYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQ 397
           Q L +S     N+   +   L     L EL + DN +R       + + ++  +++  N 
Sbjct: 105 QKLYISK----NHLVEIPPNL--PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNP 158

Query: 398 LIGSISSSPLIHLTSIEDLILSDNHF-QIPISLEPLFNHSRLKIFDAENNEINAEIIESH 456
           L  S           +  L +S+     IP  L        L     ++N+I  + IE  
Sbjct: 159 LENSGFEPGAFDGLKLNYLRISEAKLTGIPKDL-----PETLNELHLDHNKI--QAIELE 211

Query: 457 SLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLR 516
            L     +L  L L              +NQ       +  I       N  L     LR
Sbjct: 212 DLL-RYSKLYRLGLG-------------HNQ-------IRMI------ENGSLSFLPTLR 244

Query: 517 QLSLVNDSLVGPFRLP--IHSHKQLRLLDVSKNNFQGHIP------LEIGDILSRLTVFN 568
           +L L N+ L    R+P  +   K L+++ +  NN    +       +  G   +     +
Sbjct: 245 ELHLDNNKLS---RVPAGLPDLKLLQVVYLHTNNIT-KVGVNDFCPVGFGVKRAYYNGIS 300

Query: 569 ISMNALDGSI--PSSFGNMNFLQFLDLSNNQ 597
           +  N +      P++F  +     +   N +
Sbjct: 301 LFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 45.0 bits (107), Expect = 8e-05
 Identities = 41/221 (18%), Positives = 66/221 (29%), Gaps = 52/221 (23%)

Query: 759 ILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGH 818
           ++  S   L   +P  +      + L L +N++          L  L  L L NN +   
Sbjct: 37  VVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKI 93

Query: 819 IPSCFDN----TTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTY 874
               F        L+   N+   + P                                  
Sbjct: 94  HEKAFSPLRKLQKLYISKNHLVEIPP---------------------------------- 119

Query: 875 QGRVPSLLSGLDLSCNRLIGHIPPQI-GNLTKIQTLNLSHNNLAGPI--PSTFSNLRNIE 931
              +PS L  L +  NR I  +P  +   L  +  + +  N L      P  F  L  + 
Sbjct: 120 --NLPSSLVELRIHDNR-IRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLN 175

Query: 932 SLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERA 972
            L +S  KL+  IP  L    TL    + +N +   I    
Sbjct: 176 YLRISEAKLT-GIPKDL--PETLNELHLDHNKIQ-AIELED 212

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 92.7 bits (230), Expect = 2e-20
 Identities = 62/271 (22%), Positives = 93/271 (34%), Gaps = 25/271 (9%)

Query: 539 LRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQL 598
           L+ +D   +  Q    ++    L RLTV    + +           ++ LQ L L N ++
Sbjct: 49  LKRVDTEADLGQFTDIIKSLS-LKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEV 107

Query: 599 TGEIP-EHLAMGCVSLRSLALSNNNLEGHMFS----RNFNLTNLIWLQLEGNHFVGEIPQ 653
           TG  P   L      L  L L N +           + +    L  L +   H +    +
Sbjct: 108 TGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCE 167

Query: 654 SLSKCSSLQGLFLSNNSLSGKI-------PRWLGNLTVLRHIIMPKNHIEGPIPLEFCQL 706
            +    +L  L LS+N   G+        P     L VL           G         
Sbjct: 168 QVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAAR 227

Query: 707 RILQILDISDNNISGSLP--SCYDFVCIEQVHLSKNMLHGQLKEGTFFNCL--TLMILDL 762
             LQ LD+S N++  +    SC     +  ++LS   L            L   L +LDL
Sbjct: 228 VQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK------QVPKGLPAKLSVLDL 281

Query: 763 SYNHLNGNIPDRVDGLSQLSYLILAHNNLEG 793
           SYN L+   P   D L Q+  L L  N    
Sbjct: 282 SYNRLDR-NPS-PDELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 86.1 bits (213), Expect = 2e-18
 Identities = 61/304 (20%), Positives = 88/304 (28%), Gaps = 17/304 (5%)

Query: 381 CLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKI 440
           C  N +  +    S+   +G+          S+E L+   +          +     LK 
Sbjct: 13  CSCNFSDPKPDWSSAFNCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKR 72

Query: 441 FDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQH-DLEYVRLSHIK 499
                  I + I+           LQ L L +    G   P  L     DL  + L ++ 
Sbjct: 73  LTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVS 132

Query: 500 MNEEFPNWLLE----NNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPL 555
                  WL E        L+ LS+     +      +     L  LD+S N   G   L
Sbjct: 133 WAT-RDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGL 191

Query: 556 EIGDI------LSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMG 609
                      L  L + N  M    G   +       LQ LDLS+N L           
Sbjct: 192 ISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDW 251

Query: 610 CVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNN 669
              L SL LS   L+  +         L  L L  N      P    +   +  L L  N
Sbjct: 252 PSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRL-DRNPSPD-ELPQVGNLSLKGN 306

Query: 670 SLSG 673
               
Sbjct: 307 PFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 82.6 bits (204), Expect = 4e-17
 Identities = 43/203 (21%), Positives = 69/203 (33%), Gaps = 11/203 (5%)

Query: 96  LFTPFQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILSSLARLSSL 155
           L      L  L+LR+   A         +      LK+L++      N     +    +L
Sbjct: 116 LEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPAL 175

Query: 156 TSLDLSANRLKGSIDIKGPKRLSRLNNLKVFDLSGNLFN---NSILSSLARLSSLRSLLL 212
           ++LDLS N   G   +       +   L+V  L             +  A    L+ L L
Sbjct: 176 STLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDL 235

Query: 213 YDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGIRDGSK 272
             N L  +      D  S L  L++S+  +   +VP+      KLS L L    +     
Sbjct: 236 SHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK--QVPKGLP--AKLSVLDLSYNRLDRNPS 291

Query: 273 LLQSMGSFPSLNTLDLSYNNFTE 295
             +     P +  L L  N F +
Sbjct: 292 PDE----LPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 78.0 bits (192), Expect = 1e-15
 Identities = 50/285 (17%), Positives = 90/285 (31%), Gaps = 26/285 (9%)

Query: 102 QLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILSSLARLSSLTSLDLS 161
            LE L  R +  A   +   + +   L  L +               +  +S L  L L 
Sbjct: 44  SLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLE 103

Query: 162 ANRLKGSIDIKGPKRLSRLNNLKVFDLSGNLFNNSILSSLARLS-----SLRSLLLYDNR 216
              + G+     P   +   +L + +L  N+   +  + LA L       L+ L +    
Sbjct: 104 NLEVTGTAPP--PLLEATGPDLNILNLR-NVSWATRDAWLAELQQWLKPGLKVLSIAQAH 160

Query: 217 LEGSIDVKEFDSLSNLEELDMSYNEI--DNFEVPQACSG-LRKLSYLHLLRVGIRDGSKL 273
              +   ++      L  LD+S N    +   +   C      L  L L   G+   S +
Sbjct: 161 SL-NFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGV 219

Query: 274 LQSM-GSFPSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDARIALNTSFLQIIGE 332
             ++  +   L  LDLS+N+  +              L  L +        T   Q+   
Sbjct: 220 CSALAAARVQLQGLDLSHNSLRDAAGAP--SCDWPSQLNSLNLS------FTGLKQVPKG 271

Query: 333 SMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGS 377
               +  L LS + +  N    +     L  +  L +  N    S
Sbjct: 272 LPAKLSVLDLSYNRLDRNPSPDE-----LPQVGNLSLKGNPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 76.5 bits (188), Expect = 5e-15
 Identities = 67/368 (18%), Positives = 105/368 (28%), Gaps = 95/368 (25%)

Query: 567 FNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGH 626
           ++ + N L  +    +G    L++L    +           +  +SL+ L +    +   
Sbjct: 24  WSSAFNCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSR 83

Query: 627 MFS---RNFNLTNLIWLQLEGNHFVGEIPQSLSKCS--SLQGLFLSNNSLSGKIPRWLGN 681
           +     R   ++ L  L LE     G  P  L + +   L  L L N S +     WL  
Sbjct: 84  ILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWAT-RDAWLAE 142

Query: 682 L-----TVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVH 736
           L       L+ + + + H       +      L  LD+SDN   G               
Sbjct: 143 LQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERG------------ 190

Query: 737 LSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVP 796
                L   L    F     L +L L    +                         G   
Sbjct: 191 -----LISALCPLKFPT---LQVLALRNAGME---------------------TPSGVCS 221

Query: 797 IQLCRLNQLQLLDLSNNNLHGHIP--SCFDNTTLHE---RYNNGSSLQPFETSFVIMGGM 851
                  QLQ LDLS+N+L       SC   + L+     +     +             
Sbjct: 222 ALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKG---------- 271

Query: 852 DVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNL 911
                                     +P+ LS LDLS NRL     P    L ++  L+L
Sbjct: 272 --------------------------LPAKLSVLDLSYNRL--DRNPSPDELPQVGNLSL 303

Query: 912 SHNNLAGP 919
             N     
Sbjct: 304 KGNPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 72.6 bits (178), Expect = 7e-14
 Identities = 57/296 (19%), Positives = 100/296 (33%), Gaps = 30/296 (10%)

Query: 191 NLFNNSILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQ- 249
           + FN    + +      RSL     R++   D+ +F     ++ L +    +    +P  
Sbjct: 26  SAFNCLGAADVELYGGGRSLEYLLKRVDTEADLGQF--TDIIKSLSLKRLTVRAARIPSR 83

Query: 250 ------ACSGLRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTETVTTTTQG 303
                    G+  L  L L  + +   +       + P LN L+L   ++        + 
Sbjct: 84  ILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAEL 143

Query: 304 FPHFK-SLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCP-- 360
               K  LK L +  A      +F        P++  L LS++        L   LCP  
Sbjct: 144 QQWLKPGLKVLSIAQAHS---LNFSCEQVRVFPALSTLDLSDNPELGER-GLISALCPLK 199

Query: 361 LVHLQELHMADNDLR---GSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLI 417
              LQ L + +  +    G      A    L+ LD+S N L  +  +      + +  L 
Sbjct: 200 FPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLN 259

Query: 418 LSDNHF-QIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSS 472
           LS     Q+P  L       +L + D   N ++        L     Q+ +L L  
Sbjct: 260 LSFTGLKQVPKGLPA-----KLSVLDLSYNRLD-RNPSPDELP----QVGNLSLKG 305

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 67.6 bits (165), Expect = 4e-12
 Identities = 37/168 (22%), Positives = 54/168 (32%), Gaps = 15/168 (8%)

Query: 78  VLDLSQTHRGEYWYLNASLFTPFQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLV 137
           VL ++Q H       +      F  L +LDL DN   G           +   L++L L 
Sbjct: 153 VLSIAQAHSLN---FSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALR 209

Query: 138 GNLFN---NSILSSLARLSSLTSLDLSANRLKGSIDIKGPKRLSRLNNLKVFDLSGNLFN 194
                       +  A    L  LDLS N L+ +            + L   +LS     
Sbjct: 210 NAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAG---APSCDWPSQLNSLNLSFTGL- 265

Query: 195 NSILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEI 242
             +   L   + L  L L  NRL+        D L  +  L +  N  
Sbjct: 266 KQVPKGL--PAKLSVLDLSYNRLDR---NPSPDELPQVGNLSLKGNPF 308

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 66.5 bits (162), Expect = 9e-12
 Identities = 58/360 (16%), Positives = 103/360 (28%), Gaps = 83/360 (23%)

Query: 615 SLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGK 674
           S        +  ++    +L  L  L+             + K  SL+ L +    +  +
Sbjct: 26  SAFNCLGAADVELYGGGRSLEYL--LKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSR 83

Query: 675 IPRW---LGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVC 731
           I      +  ++ L+ + +    + G  P    +     +  ++  N+S +         
Sbjct: 84  ILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWAT-------- 135

Query: 732 IEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNL 791
                         L E   +    L +L ++  H      ++V     LS L L+ N  
Sbjct: 136 ----------RDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPE 185

Query: 792 EGEVP----IQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVI 847
            GE      +   +   LQ+L L N                        +     ++   
Sbjct: 186 LGERGLISALCPLKFPTLQVLALRN--------------------AGMETPSGVCSALA- 224

Query: 848 MGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQI-GNLTKI 906
                                             L GLDLS N L            +++
Sbjct: 225 -----------------------------AARVQLQGLDLSHNSLRDAAGAPSCDWPSQL 255

Query: 907 QTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSG 966
            +LNLS   L        + L     LDLSYN+L  + P    EL  +   S+  N    
Sbjct: 256 NSLNLSFTGLKQVPKGLPAKL---SVLDLSYNRLD-RNP-SPDELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 44.9 bits (106), Expect = 8e-05
 Identities = 31/125 (24%), Positives = 42/125 (33%), Gaps = 12/125 (9%)

Query: 69  CNNTMGRVVVLDLSQTHRGEYWYLNASLFTPFQQLESLDLRDNDIAGCVENEGLERLSRL 128
           C      + VL L          + ++L     QL+ LDL  N +       G       
Sbjct: 196 CPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDA---AGAPSCDWP 252

Query: 129 SNLKMLNLVGNLFNNSILSSLARLSSLTSLDLSANRLKGSIDIKGPKRLSRLNNLKVFDL 188
           S L  LNL        +   L   + L+ LDLS NRL  +           L  +    L
Sbjct: 253 SQLNSLNLSFTGL-KQVPKGL--PAKLSVLDLSYNRLDRNPSP------DELPQVGNLSL 303

Query: 189 SGNLF 193
            GN F
Sbjct: 304 KGNPF 308

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 91.3 bits (227), Expect = 3e-20
 Identities = 55/252 (21%), Positives = 91/252 (36%), Gaps = 31/252 (12%)

Query: 100 FQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILSSLARLSSLTSLD 159
           F +    +L+   +            + L+++  +    +   +  +  +  L ++T L 
Sbjct: 23  FAETIKDNLKKKSV------TDAVTQNELNSIDQIIANNSDIKS--VQGIQYLPNVTKLF 74

Query: 160 LSANRLKGSIDIKGPKRLSRLNNLKVFDLSGNLFNNSILSSLARLSSLRSLLLYDNRLEG 219
           L+ N+L    DIK    L+ L NL    L  N      LSSL  L  L+SL L  N +  
Sbjct: 75  LNGNKLT---DIKP---LANLKNLGWLFLDEN--KVKDLSSLKDLKKLKSLSLEHNGIS- 125

Query: 220 SIDVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGIRDGSKLLQSMGS 279
             D+     L  LE L +  N+I +  V    S L KL  L L    I D    +  +  
Sbjct: 126 --DINGLVHLPQLESLYLGNNKITDITVL---SRLTKLDTLSLEDNQISD----IVPLAG 176

Query: 280 FPSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDARIALNTSFLQIIGESMPSIQY 339
              L  L LS N+ ++      +     K+L  L +            Q       +++ 
Sbjct: 177 LTKLQNLYLSKNHISD-----LRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKN 231

Query: 340 LSLSNSSVSNNS 351
              S  +    S
Sbjct: 232 TDGSLVTPEIIS 243

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 88.2 bits (219), Expect = 4e-19
 Identities = 47/253 (18%), Positives = 90/253 (35%), Gaps = 33/253 (13%)

Query: 122 LERLSRLSNLKMLNLVGNLFNNSILSSLARLSSLTSLDLSANRLKGSIDIKGPKRLSRLN 181
           +      +     NL      +    +   L+S+  +  + + +K    ++G   +  L 
Sbjct: 17  IFSDDAFAETIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDIK---SVQG---IQYLP 68

Query: 182 NLKVFDLSGNLFNNSILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNE 241
           N+    L+GN   +  +  LA L +L  L L +N+++   D+     L  L+ L + +N 
Sbjct: 69  NVTKLFLNGNKLTD--IKPLANLKNLGWLFLDENKVK---DLSSLKDLKKLKSLSLEHNG 123

Query: 242 IDNFEVPQACSGLRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTETVTTTT 301
           I +         L +L  L+L    I D    +  +     L+TL L  N  ++      
Sbjct: 124 ISDIN---GLVHLPQLESLYLGNNKITD----ITVLSRLTKLDTLSLEDNQISD-----I 171

Query: 302 QGFPHFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPL 361
                   L+ LY+    I+ +   L      + ++  L L +    N           L
Sbjct: 172 VPLAGLTKLQNLYLSKNHIS-DLRAL----AGLKNLDVLELFSQECLNKP---INHQSNL 223

Query: 362 VHLQELHMADNDL 374
           V    +   D  L
Sbjct: 224 VVPNTVKNTDGSL 236

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 86.3 bits (214), Expect = 2e-18
 Identities = 48/303 (15%), Positives = 106/303 (34%), Gaps = 60/303 (19%)

Query: 140 LFNNSI--LSSLARLSSLTSLDLSANRLKGSIDIKGPKRLSRLNNLKVFDLSGNLFNNSI 197
                I  + S    +     +L          +      + LN++     + +   +  
Sbjct: 9   TVPTPIKQIFSDDAFAETIKDNLKKK------SVTDAVTQNELNSIDQIIANNSDIKS-- 60

Query: 198 LSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKL 257
           +  +  L ++  L L  N+L    D+K   +L NL  L +  N++ +         L+ L
Sbjct: 61  VQGIQYLPNVTKLFLNGNKLT---DIKPLANLKNLGWLFLDENKVKDLS------SLKDL 111

Query: 258 SYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDD 317
                                    L +L L +N  ++       G  H   L+ LY+ +
Sbjct: 112 -----------------------KKLKSLSLEHNGISD-----INGLVHLPQLESLYLGN 143

Query: 318 ARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGS 377
            +I  + + L      +  +  LSL ++ +S+        L  L  LQ L+++ N +   
Sbjct: 144 NKIT-DITVL----SRLTKLDTLSLEDNQISDIV-----PLAGLTKLQNLYLSKNHISDL 193

Query: 378 LPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSR 437
               LA + +L +L++ S +   +   +   +L     +  +D     P  +    ++ +
Sbjct: 194 RA--LAGLKNLDVLELFSQE-CLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEK 250

Query: 438 LKI 440
             +
Sbjct: 251 PNV 253

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 85.1 bits (211), Expect = 5e-18
 Identities = 48/247 (19%), Positives = 102/247 (41%), Gaps = 30/247 (12%)

Query: 222 DVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGIRDGSKLLQSMGSFP 281
            +   D+ +   + ++    + +       + L  +  +      I+     +Q +   P
Sbjct: 16  QIFSDDAFAETIKDNLKKKSVTDAV---TQNELNSIDQIIANNSDIKS----VQGIQYLP 68

Query: 282 SLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLS 341
           ++  L L+ N  T+      +   + K+L  L++D+ ++  + S L    + +  ++ LS
Sbjct: 69  NVTKLFLNGNKLTDI-----KPLANLKNLGWLFLDENKVK-DLSSL----KDLKKLKSLS 118

Query: 342 LSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGS 401
           L ++ +S+ +     GL  L  L+ L++ +N +       L+ +T L  L +  NQ I  
Sbjct: 119 LEHNGISDIN-----GLVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQ-ISD 170

Query: 402 ISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTP 461
           I   PL  LT +++L LS NH      L  L     L + +  + E   + I   S    
Sbjct: 171 IV--PLAGLTKLQNLYLSKNHIS---DLRALAGLKNLDVLELFSQECLNKPINHQSNLVV 225

Query: 462 NFQLQSL 468
              +++ 
Sbjct: 226 PNTVKNT 232

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 81.3 bits (201), Expect = 7e-17
 Identities = 53/199 (26%), Positives = 80/199 (40%), Gaps = 24/199 (12%)

Query: 97  FTPFQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILSSLARLSSLT 156
                 +  L L  N +        ++ L+ L NL  L L  N      LSSL  L  L 
Sbjct: 64  IQYLPNVTKLFLNGNKL------TDIKPLANLKNLGWLFLDEN--KVKDLSSLKDLKKLK 115

Query: 157 SLDLSANRLKGSIDIKGPKRLSRLNNLKVFDLSGNLFNNSILSSLARLSSLRSLLLYDNR 216
           SL L  N +    DI G   L  L  L+   L  N    + ++ L+RL+ L +L L DN+
Sbjct: 116 SLSLEHNGIS---DING---LVHLPQLESLYLGNN--KITDITVLSRLTKLDTLSLEDNQ 167

Query: 217 LEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGIRDGSKLLQS 276
           +    D+     L+ L+ L +S N I +     A +GL+ L  L L      +     QS
Sbjct: 168 IS---DIVPLAGLTKLQNLYLSKNHISDLR---ALAGLKNLDVLELFSQECLNKPINHQS 221

Query: 277 MGSFPSLNTLDLSYNNFTE 295
             +    NT+  +  +   
Sbjct: 222 --NLVVPNTVKNTDGSLVT 238

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 75.5 bits (186), Expect = 8e-15
 Identities = 48/257 (18%), Positives = 94/257 (36%), Gaps = 21/257 (8%)

Query: 561 LSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSN 620
            +     N+   ++      +   +N +  +  +N+ +   + + +     ++  L L+ 
Sbjct: 23  FAETIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDIK-SV-QGIQ-YLPNVTKLFLNG 77

Query: 621 NNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLG 680
           N L         NL NL WL L+ N  V ++  SL     L+ L L +N +S  I   L 
Sbjct: 78  NKLT--DIKPLANLKNLGWLFLDENK-VKDL-SSLKDLKKLKSLSLEHNGIS-DIN-GLV 131

Query: 681 NLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKN 740
           +L  L  + +  N I     L   +L  L  L + DN IS  +        ++ ++LSKN
Sbjct: 132 HLPQLESLYLGNNKITDITVLS--RLTKLDTLSLEDNQIS-DIVPLAGLTKLQNLYLSKN 188

Query: 741 MLHGQLKEGTFFNCLT-LMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQL 799
                + +      L  L +L+L          +    L   + +     +L    P  +
Sbjct: 189 ----HISDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL--VTPEII 242

Query: 800 CRLNQLQLLDLSNNNLH 816
                 +  ++  +   
Sbjct: 243 SDDGDYEKPNVKWHLPE 259

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 58.9 bits (143), Expect = 2e-09
 Identities = 47/291 (16%), Positives = 93/291 (31%), Gaps = 55/291 (18%)

Query: 655 LSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDI 714
               +      L   S++  +      L  +  II   + I+    ++   L  +  L +
Sbjct: 20  DDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQGIQ--YLPNVTKLFL 75

Query: 715 SDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLT-LMILDLSYNHLNGNIPD 773
           + N ++  +    +   +  + L +N    ++K+ +    L  L  L L +N ++ +I  
Sbjct: 76  NGNKLT-DIKPLANLKNLGWLFLDEN----KVKDLSSLKDLKKLKSLSLEHNGIS-DING 129

Query: 774 RVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHE--- 830
            +  L QL  L L +N +       L RL +L  L L +N +   I      T L     
Sbjct: 130 -LVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQIS-DIVPLAGLTKLQNLYL 185

Query: 831 RYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCN 890
             N+ S L+                                          L  L+L   
Sbjct: 186 SKNHISDLRALAGL-----------------------------------KNLDVLELFSQ 210

Query: 891 RLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLS 941
             +        NL    T+  +  +L    P   S+  + E  ++ ++   
Sbjct: 211 ECLNKPINHQSNLVVPNTVKNTDGSLVT--PEIISDDGDYEKPNVKWHLPE 259

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 58.1 bits (141), Expect = 4e-09
 Identities = 41/226 (18%), Positives = 84/226 (37%), Gaps = 26/226 (11%)

Query: 509 LENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDI-----LSR 563
           ++    + +L L  + L      P+ + K L  L + +N         + D+     L +
Sbjct: 64  IQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENK--------VKDLSSLKDLKK 113

Query: 564 LTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNL 623
           L   ++  N +  S  +   ++  L+ L L NN++T      L+     L +L+L +N +
Sbjct: 114 LKSLSLEHNGI--SDINGLVHLPQLESLYLGNNKIT--DITVLS-RLTKLDTLSLEDNQI 168

Query: 624 EGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLT 683
                     LT L  L L  NH + ++ ++L+   +L  L L +     K      NL 
Sbjct: 169 S--DIVPLAGLTKLQNLYLSKNH-ISDL-RALAGLKNLDVLELFSQECLNKPINHQSNLV 224

Query: 684 VLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDF 729
           V   +      +  P  +        +  ++  +    +    + F
Sbjct: 225 VPNTVKNTDGSLVTPEIISD--DGDYEKPNVKWHLPEFTNEVSFIF 268

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 58.1 bits (141), Expect = 4e-09
 Identities = 45/309 (14%), Positives = 87/309 (28%), Gaps = 59/309 (19%)

Query: 664 LFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSL 723
                  +                  + K  +   +     +L  +  +  ++++I  S+
Sbjct: 7   TITVPTPIKQIFS--DDAFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIK-SV 61

Query: 724 PSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLT-LMILDLSYNHLNGNIPDRVDGLSQLS 782
                   + ++ L+ N    +L +      L  L  L L  N +  ++   +  L +L 
Sbjct: 62  QGIQYLPNVTKLFLNGN----KLTDIKPLANLKNLGWLFLDENKVK-DL-SSLKDLKKLK 115

Query: 783 YLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDN----TTLHERYNNGSSL 838
            L L HN +     +    L QL+ L L NN +     +         TL    N  S +
Sbjct: 116 SLSLEHNGISDINGLV--HLPQLESLYLGNNKIT--DITVLSRLTKLDTLSLEDNQISDI 171

Query: 839 QPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPP 898
            P                                       + L  L LS N  I  +  
Sbjct: 172 VPLAG-----------------------------------LTKLQNLYLSKNH-ISDLRA 195

Query: 899 QIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFS 958
            +  L  +  L L          +  SNL    ++  +   L    P  + +       +
Sbjct: 196 -LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLV--TPEIISDDGDYEKPN 252

Query: 959 VAYNNLSGK 967
           V ++     
Sbjct: 253 VKWHLPEFT 261

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 94.7 bits (235), Expect = 5e-20
 Identities = 59/315 (18%), Positives = 103/315 (32%), Gaps = 73/315 (23%)

Query: 508 LLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVF 567
             +   K        +  V    L      Q   L +++ N    +P  +     ++TV 
Sbjct: 32  AWDKWEKQALPGENRNEAVS--LLKECLINQFSELQLNRLNLS-SLPDNLP---PQITVL 85

Query: 568 NISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHM 627
            I+ NAL  S+P    +   L++LD  +N+L+  +PE  A    SL+ L + NN L    
Sbjct: 86  EITQNALI-SLPELPAS---LEYLDACDNRLS-TLPELPA----SLKHLDVDNNQLT--- 133

Query: 628 FSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRH 687
                                  +P+  +    L+ +   NN L+  +P    +L VL  
Sbjct: 134 ----------------------MLPELPA---LLEYINADNNQLT-MLPELPTSLEVLS- 166

Query: 688 IIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLK 747
             +  N +     L       L+ LD+S N +  SLP+        + H S+        
Sbjct: 167 --VRNNQLTFLPEL----PESLEALDVSTNLLE-SLPAV-----PVRNHHSEETE----- 209

Query: 748 EGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQL 807
                     +      N +  +IP+ +  L     +IL  N L   +   L +      
Sbjct: 210 ----------IFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPD 258

Query: 808 LDLSNNNLHGHIPSC 822
                          
Sbjct: 259 YHGPRIYFSMSDGQQ 273

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 86.6 bits (214), Expect = 2e-17
 Identities = 60/365 (16%), Positives = 99/365 (27%), Gaps = 100/365 (27%)

Query: 584 NMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHM-FSRNFNLTNLIWLQL 642
           N NF    +   N ++                 AL   N    +   +   +     LQL
Sbjct: 8   NNNFSLSQNSFYNTIS-GTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQL 66

Query: 643 EGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLE 702
              +    +P +L     +  L ++ N+L   +P    +L  L       N +   +P  
Sbjct: 67  NRLNLS-SLPDNL--PPQITVLEITQNALI-SLPELPASLEYL---DACDNRLST-LPEL 118

Query: 703 FCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDL 762
              L   + LD+ +N ++  LP                 L   L+            ++ 
Sbjct: 119 PASL---KHLDVDNNQLT-MLPE----------------LPALLEY-----------INA 147

Query: 763 SYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSC 822
             N L   +P+     + L  L + +N L   +P        L+ LD+S N L   +P+ 
Sbjct: 148 DNNQLT-MLPEL---PTSLEVLSVRNNQLT-FLPELP---ESLEALDVSTNLLE-SLPAV 198

Query: 823 FDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLL 882
                  E                                                    
Sbjct: 199 PVRNHHSEE-------------------------------------------------TE 209

Query: 883 SGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSW 942
                  NR I HIP  I +L    T+ L  N L+  I  + S               S 
Sbjct: 210 IFFRCRENR-ITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSM 268

Query: 943 KIPYQ 947
               Q
Sbjct: 269 SDGQQ 273

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 81.6 bits (201), Expect = 5e-16
 Identities = 53/320 (16%), Positives = 106/320 (33%), Gaps = 45/320 (14%)

Query: 101 QQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSI-LSSLARLSSLTSLD 159
               +  L  N     +     +  S     +   L G   N ++ L     ++  + L 
Sbjct: 6   PINNNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQ 65

Query: 160 LSANRLKGSIDIKGPKRLSRLNNLKVFDLSGNLFNNSILSSL-ARLSSLRSLLLYDNRLE 218
           L+   L  S+    P  L     + V +++ N      L SL    +SL  L   DNRL 
Sbjct: 66  LNRLNLS-SL----PDNL--PPQITVLEITQNA-----LISLPELPASLEYLDACDNRLS 113

Query: 219 GSIDVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGIRDGSKLLQSMG 278
            ++     +  ++L+ LD+  N++    +P+  + L  ++          D ++L     
Sbjct: 114 -TLP----ELPASLKHLDVDNNQLT--MLPELPALLEYINA---------DNNQLTMLPE 157

Query: 279 SFPSLNTLDLSYNNFTETVTTTTQGFPHF-KSLKELYMDDARI-ALNTSFLQIIGESMPS 336
              SL  L +  N  T          P   +SL+ L +    + +L    ++    S  +
Sbjct: 158 LPTSLEVLSVRNNQLTF--------LPELPESLEALDVSTNLLESLPAVPVRNHH-SEET 208

Query: 337 IQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSN 396
             +         N    + + +  L     + + DN L   +   L+  T+         
Sbjct: 209 EIFFRCRE----NRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRI 264

Query: 397 QLIGSISSSPLIHLTSIEDL 416
               S      +H    + +
Sbjct: 265 YFSMSDGQQNTLHRPLADAV 284

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 78.1 bits (192), Expect = 7e-15
 Identities = 55/304 (18%), Positives = 92/304 (30%), Gaps = 73/304 (24%)

Query: 663 GLFLSNNSLSGKIPRWLGNLTVLRHIIMPK-NHIEGPIPLEFCQLRILQILDISDNNISG 721
                 N++SG    +           +P  N  E    L+ C +     L ++  N+S 
Sbjct: 14  SQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLNLS- 72

Query: 722 SLPSCYDFVCIEQVHLSKNMLH------GQLKEGTFFNCLTLMILDLSYNHLNGNIPDRV 775
           SLP       I  + +++N L         L+            LD   N L+  +P+  
Sbjct: 73  SLPDN-LPPQITVLEITQNALISLPELPASLEY-----------LDACDNRLS-TLPEL- 118

Query: 776 DGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDN-TTLHERYNN 834
              + L +L + +N L   +P        L+ ++  NN L   +P    +   L  R N 
Sbjct: 119 --PASLKHLDVDNNQLT-MLPELPA---LLEYINADNNQLT-MLPELPTSLEVLSVRNNQ 171

Query: 835 GSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIG 894
            + L                                        P  L  LD+S N L  
Sbjct: 172 LTFLPEL-------------------------------------PESLEALDVSTNLLE- 193

Query: 895 HIPPQIGNLTKIQT----LNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVE 950
            +P         +          N +   IP    +L    ++ L  N LS +I   L +
Sbjct: 194 SLPAVPVRNHHSEETEIFFRCRENRITH-IPENILSLDPTCTIILEDNPLSSRIRESLSQ 252

Query: 951 LNTL 954
               
Sbjct: 253 QTAQ 256

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 75.8 bits (186), Expect = 4e-14
 Identities = 62/307 (20%), Positives = 108/307 (35%), Gaps = 47/307 (15%)

Query: 425 IPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGIT--FPK 482
           + I L P+ N+  L   ++  N I+    +  S      + +   L    R+       +
Sbjct: 1   MSIML-PINNNFSLSQ-NSFYNTISGTYADYFSAWD---KWEKQALPGENRNEAVSLLKE 55

Query: 483 FLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLL 542
            L NQ     ++L+ + +    P+ L      +  L +  ++L+    LP      L  L
Sbjct: 56  CLINQ--FSELQLNRLNL-SSLPDNLPPQ---ITVLEITQNALI---SLP-ELPASLEYL 105

Query: 543 DVSKNNFQGHIPLEIG----------------DILSRLTVFNISMNALDGSIPSSFGNMN 586
           D   N     +P                    ++ + L   N   N L   +P    +  
Sbjct: 106 DACDNRLS-TLPELPASLKHLDVDNNQLTMLPELPALLEYINADNNQL-TMLPELPTS-- 161

Query: 587 FLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEG--HMFSRNFNLTNL-IWLQLE 643
            L+ L + NNQLT  +PE       SL +L +S N LE    +  RN +     I+ +  
Sbjct: 162 -LEVLSVRNNQLT-FLPELPE----SLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCR 215

Query: 644 GNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEF 703
            N     IP+++        + L +N LS +I   L   T       P+ +       + 
Sbjct: 216 ENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQN 274

Query: 704 CQLRILQ 710
              R L 
Sbjct: 275 TLHRPLA 281

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 75.4 bits (185), Expect = 4e-14
 Identities = 67/350 (19%), Positives = 116/350 (33%), Gaps = 66/350 (18%)

Query: 177 LSRLNNLKVFDLSGNLFNNSILSS----LARLSSLRSLLLYDNRLEGSIDVKEFDSLSNL 232
           L   NN     LS N F N+I  +     +         L       ++ + +   ++  
Sbjct: 5   LPINNNF---SLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQF 61

Query: 233 EELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNN 292
            EL ++   +    +P   +   +++ L +        + L+       SL  LD   N 
Sbjct: 62  SELQLNRLNLS--SLPD--NLPPQITVLEI------TQNALISLPELPASLEYLDACDNR 111

Query: 293 FTETVTTTTQGFP-HFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNS 351
            +          P    SLK L +D+ +       L ++ E    ++Y++  N    N  
Sbjct: 112 LST--------LPELPASLKHLDVDNNQ-------LTMLPELPALLEYINADN----NQL 152

Query: 352 RTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSP--LIH 409
             L +       L+ L + +N L   LP       SL  LDVS+N L  S+ + P    H
Sbjct: 153 TMLPELPT---SLEVLSVRNNQLT-FLP---ELPESLEALDVSTNLLE-SLPAVPVRNHH 204

Query: 410 LTSIE-DLILSDNHF-QIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQS 467
               E      +N    IP +   + +         E+N +++ I ES S      Q  +
Sbjct: 205 SEETEIFFRCRENRITHIPEN---ILSLDPTCTIILEDNPLSSRIRESLS------QQTA 255

Query: 468 LLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQ 517
                G R   +      N          H  + +    W  EN      
Sbjct: 256 QPDYHGPRIYFSMSDGQQNTL--------HRPLADAVTAWFPENKQSDVS 297

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 74.6 bits (183), Expect = 7e-14
 Identities = 44/306 (14%), Positives = 91/306 (29%), Gaps = 50/306 (16%)

Query: 152 LSSLTSLDLSANRLKGSIDIKGPKRLSRLNNLKVFDLSGNLFNNSI-LSSLARLSSLRSL 210
           L    +  LS N    +I        S  +  +   L G   N ++ L     ++    L
Sbjct: 5   LPINNNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSEL 64

Query: 211 LLYDNRLE---GSIDVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGI 267
            L    L     ++          +  L+++ N +    +P+  + L  L         +
Sbjct: 65  QLNRLNLSSLPDNL-------PPQITVLEITQNALI--SLPELPASLEYLDACDNRLSTL 115

Query: 268 RDGSKLLQSM-----------GSFPSLNTLDLSYNNFTETVTTTTQGFPH-FKSLKELYM 315
            +    L+ +                L  ++   N  T          P    SL+ L +
Sbjct: 116 PELPASLKHLDVDNNQLTMLPELPALLEYINADNNQLTM--------LPELPTSLEVLSV 167

Query: 316 DDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQE----LHMAD 371
            + +       L  + E   S++ L +S     N   +L        H +E        +
Sbjct: 168 RNNQ-------LTFLPELPESLEALDVST----NLLESLPAVPVRNHHSEETEIFFRCRE 216

Query: 372 NDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEP 431
           N +   +P  + ++     + +  N L  S     L   T+  D      +F +    + 
Sbjct: 217 NRIT-HIPENILSLDPTCTIILEDNPLS-SRIRESLSQQTAQPDYHGPRIYFSMSDGQQN 274

Query: 432 LFNHSR 437
             +   
Sbjct: 275 TLHRPL 280

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 67.3 bits (164), Expect = 1e-11
 Identities = 39/200 (19%), Positives = 73/200 (36%), Gaps = 38/200 (19%)

Query: 100 FQQLESLDLRDNDIAGCVENEGLERL-SRLSNLKMLNLVGNLFNNSILSSL-ARLSSLTS 157
             Q+  L++  N          L  L    ++L+ L+   N      LS+L    +SL  
Sbjct: 79  PPQITVLEITQNA---------LISLPELPASLEYLDACDNR-----LSTLPELPASLKH 124

Query: 158 LDLSANRLKGSIDIKGPKRLSRLNNLKVFDLSGNLFNNSILSSLARLSSLRSLLLYDNRL 217
           LD+  N+L        P+  + L  +       N  NN +       +SL  L + +N+L
Sbjct: 125 LDVDNNQLT-----MLPELPALLEYI-------NADNNQLTMLPELPTSLEVLSVRNNQL 172

Query: 218 EGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGIRDG--SKLLQ 275
                    +   +LE LD+S N ++   +P              +    R+   + + +
Sbjct: 173 TFL-----PELPESLEALDVSTNLLE--SLPAVPVRNHHSEET-EIFFRCRENRITHIPE 224

Query: 276 SMGSFPSLNTLDLSYNNFTE 295
           ++ S     T+ L  N  + 
Sbjct: 225 NILSLDPTCTIILEDNPLSS 244

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 63.1 bits (153), Expect = 3e-10
 Identities = 48/221 (21%), Positives = 75/221 (33%), Gaps = 54/221 (24%)

Query: 753 NCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVP-IQLCRLNQLQLLDLS 811
           N    +  +  YN ++G   D      +     L   N    V  ++ C +NQ   L L+
Sbjct: 8   NNNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLN 67

Query: 812 NNNLHGHIPSCFDN--TTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKS 869
             NL   +P       T L    N   SL                P+             
Sbjct: 68  RLNLS-SLPDNLPPQITVLEITQNALISL----------------PE------------- 97

Query: 870 ITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRN 929
                   +P+ L  LD   NRL   +P    +L     L++ +N L   +P   + L  
Sbjct: 98  --------LPASLEYLDACDNRLS-TLPELPASLKH---LDVDNNQLTM-LPELPALL-- 142

Query: 930 IESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPE 970
            E ++   N+L+  +P     L  L   SV  N L+  +PE
Sbjct: 143 -EYINADNNQLT-MLPELPTSLEVL---SVRNNQLT-FLPE 177

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 87.7 bits (218), Expect = 9e-20
 Identities = 31/161 (19%), Positives = 66/161 (40%), Gaps = 17/161 (10%)

Query: 102 QLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILSSLARLSSLTSLDLS 161
            L  + L + ++        L  +    N+K L +      N   + ++ LS+L  L + 
Sbjct: 45  SLTYITLANINV------TDLTGIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIM 96

Query: 162 ANRLKGSIDIKGPKRLSRLNNLKVFDLSGNLFNNSILSSLARLSSLRSLLLYDNRLEGSI 221
              +           LS L +L + D+S +  ++SIL+ +  L  + S+ L  N      
Sbjct: 97  GKDVTSD----KIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-- 150

Query: 222 DVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHL 262
           D+    +L  L+ L++ ++ + ++          KL+ L+ 
Sbjct: 151 DIMPLKTLPELKSLNIQFDGVHDYR---GIEDFPKLNQLYA 188

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 86.2 bits (214), Expect = 3e-19
 Identities = 32/147 (21%), Positives = 59/147 (40%), Gaps = 14/147 (9%)

Query: 100 FQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILSSLARLSSLTSLD 159
              ++ L + +              +S LSNL+ L ++G    +  + +L+ L+SLT LD
Sbjct: 65  AHNIKDLTINNIHA------TNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118

Query: 160 LSANRLKGSIDIKGPKRLSRLNNLKVFDLSGNLFNNSILSSLARLSSLRSLLLYDNRLEG 219
           +S +      D     +++ L  +   DLS N     I   L  L  L+SL +  + +  
Sbjct: 119 ISHSA----HDDSILTKINTLPKVNSIDLSYNGAITDI-MPLKTLPELKSLNIQFDGVH- 172

Query: 220 SIDVKEFDSLSNLEELDMSYNEIDNFE 246
             D +  +    L +L      I   +
Sbjct: 173 --DYRGIEDFPKLNQLYAFSQTIGGKK 197

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 78.1 bits (193), Expect = 2e-16
 Identities = 33/193 (17%), Positives = 79/193 (40%), Gaps = 18/193 (9%)

Query: 129 SNLKMLNLVGNLFNNSILSSLARLSSLTSLDLSANRLKGSIDIKGPKRLSRLNNLKVFDL 188
           S  K         +++   + A+++SLT + L+   +    D+ G   +   +N+K   +
Sbjct: 20  STFKAYLNGLLGQSSTANITEAQMNSLTYITLANINVT---DLTG---IEYAHNIKDLTI 73

Query: 189 SGNLFNNSILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEVP 248
           +     N   + ++ LS+L  L +    +  S  +     L++L  LD+S++  D+  + 
Sbjct: 74  NNIHATN--YNPISGLSNLERLRIMGKDV-TSDKIPNLSGLTSLTLLDISHSAHDDSIL- 129

Query: 249 QACSGLRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTETVTTTTQGFPHFK 308
              + +  L  ++ + +        +  + + P L +L++ ++          +G   F 
Sbjct: 130 ---TKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGV-----HDYRGIEDFP 181

Query: 309 SLKELYMDDARIA 321
            L +LY     I 
Sbjct: 182 KLNQLYAFSQTIG 194

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 73.8 bits (182), Expect = 6e-15
 Identities = 28/176 (15%), Positives = 67/176 (38%), Gaps = 18/176 (10%)

Query: 276 SMGSFPSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDARIALNTSFLQIIGESMP 335
           +     SL  + L+  N T+       G  +  ++K+L +++     N + +      + 
Sbjct: 39  TEAQMNSLTYITLANINVTDL-----TGIEYAHNIKDLTINNIHAT-NYNPI----SGLS 88

Query: 336 SIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSS 395
           +++ L +    V+++       L  L  L  L ++ +    S+   +  +  +  +D+S 
Sbjct: 89  NLERLRIMGKDVTSDKIP---NLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSY 145

Query: 396 NQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAE 451
           N  I  I   PL  L  ++ L +  +          + +  +L    A +  I  +
Sbjct: 146 NGAITDI--MPLKTLPELKSLNIQFDGVH---DYRGIEDFPKLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 70.0 bits (172), Expect = 1e-13
 Identities = 25/161 (15%), Positives = 56/161 (34%), Gaps = 8/161 (4%)

Query: 561 LSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSN 620
           ++ LT   ++   +   + +     + ++ L ++N   T      ++ G  +L  L +  
Sbjct: 43  MNSLTYITLANINVT-DL-TGIEYAHNIKDLTINNIHATN--YNPIS-GLSNLERLRIMG 97

Query: 621 NNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLG 680
            ++          LT+L  L +  +     I   ++    +  + LS N     I   L 
Sbjct: 98  KDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP-LK 156

Query: 681 NLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISG 721
            L  L+ + +  + +     +E      L  L      I G
Sbjct: 157 TLPELKSLNIQFDGVHDYRGIE--DFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 60.0 bits (146), Expect = 3e-10
 Identities = 27/183 (14%), Positives = 62/183 (33%), Gaps = 31/183 (16%)

Query: 633 NLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPK 692
            + +L ++ L   + V ++   +    +++ L ++N   +   P  +  L+ L  + +  
Sbjct: 42  QMNSLTYITLANIN-VTDL-TGIEYAHNIKDLTINNIHATNYNP--ISGLSNLERLRIMG 97

Query: 693 NHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFF 752
             +          L  L +LDIS +    S+ +                           
Sbjct: 98  KDVTSDKIPNLSGLTSLTLLDISHSAHDDSILT------------------------KIN 133

Query: 753 NCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSN 812
               +  +DLSYN    +I   +  L +L  L +  + +     I+     +L  L   +
Sbjct: 134 TLPKVNSIDLSYNGAITDIMP-LKTLPELKSLNIQFDGVHDYRGIE--DFPKLNQLYAFS 190

Query: 813 NNL 815
             +
Sbjct: 191 QTI 193

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 54.6 bits (132), Expect = 2e-08
 Identities = 16/95 (16%), Positives = 33/95 (34%), Gaps = 11/95 (11%)

Query: 97  FTPFQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILSSLARLSSLT 156
            +    L  LD+  +      ++  L +++ L  +  ++L  N     I   L  L  L 
Sbjct: 108 LSGLTSLTLLDISHSAH----DDSILTKINTLPKVNSIDLSYNGAITDI-MPLKTLPELK 162

Query: 157 SLDLSANRLKGSIDIKGPKRLSRLNNLKVFDLSGN 191
           SL++  + +    D +G   +     L        
Sbjct: 163 SLNIQFDGVH---DYRG---IEDFPKLNQLYAFSQ 191

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 53.8 bits (130), Expect = 4e-08
 Identities = 20/84 (23%), Positives = 36/84 (42%), Gaps = 1/84 (1%)

Query: 882 LSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLS 941
           L  L +    +     P +  LT +  L++SH+     I +  + L  + S+DLSYN   
Sbjct: 90  LERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAI 149

Query: 942 WKIPYQLVELNTLAVFSVAYNNLS 965
             I   L  L  L   ++ ++ + 
Sbjct: 150 TDIM-PLKTLPELKSLNIQFDGVH 172

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 51.9 bits (125), Expect = 2e-07
 Identities = 15/87 (17%), Positives = 35/87 (40%), Gaps = 2/87 (2%)

Query: 882 LSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLS 941
           +  L ++      +  P I  L+ ++ L +   ++        S L ++  LD+S++   
Sbjct: 68  IKDLTINNIH-ATNYNP-ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHD 125

Query: 942 WKIPYQLVELNTLAVFSVAYNNLSGKI 968
             I  ++  L  +    ++YN     I
Sbjct: 126 DSILTKINTLPKVNSIDLSYNGAITDI 152

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 51.5 bits (124), Expect = 2e-07
 Identities = 30/224 (13%), Positives = 67/224 (29%), Gaps = 73/224 (32%)

Query: 383 ANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFD 442
           A M SL  + +++   +  ++   + +  +I+DL +++ H     +  P+   S L+   
Sbjct: 41  AQMNSLTYITLANIN-VTDLT--GIEYAHNIKDLTINNIHAT---NYNPISGLSNLERLR 94

Query: 443 AENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNE 502
               ++ ++ I +                                               
Sbjct: 95  IMGKDVTSDKIPN----------------------------------------------- 107

Query: 503 EFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDI-- 560
                 L   T L  L + + +        I++  ++  +D+S N         I DI  
Sbjct: 108 ------LSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNG-------AITDIMP 154

Query: 561 ---LSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGE 601
              L  L   NI  + +         +   L  L   +  + G+
Sbjct: 155 LKTLPELKSLNIQFDGVHDY--RGIEDFPKLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 50.3 bits (121), Expect = 5e-07
 Identities = 21/166 (12%), Positives = 60/166 (36%), Gaps = 12/166 (7%)

Query: 681 NLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKN 740
                 + ++ ++       +   Q+  L  + +++ N++  L        I+ + ++  
Sbjct: 21  TFKAYLNGLLGQSSTA---NITEAQMNSLTYITLANINVT-DLTGIEYAHNIKDLTINNI 76

Query: 741 MLHGQLKEGTFFNCLT-LMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQL 799
                       + L+ L  L +    +  +    + GL+ L+ L ++H+  +  +  ++
Sbjct: 77  ----HATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKI 132

Query: 800 CRLNQLQLLDLSNNNLHGHIPSCFDNTTLHE---RYNNGSSLQPFE 842
             L ++  +DLS N     I        L     +++     +  E
Sbjct: 133 NTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDYRGIE 178

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 44.9 bits (107), Expect = 3e-05
 Identities = 29/220 (13%), Positives = 65/220 (29%), Gaps = 51/220 (23%)

Query: 705 QLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLT-LMILDLS 763
             +      +  ++ +    +      +  + L+       + + T       +  L ++
Sbjct: 21  TFKAYLNGLLGQSSTANITEA--QMNSLTYITLANI----NVTDLTGIEYAHNIKDLTIN 74

Query: 764 YNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCF 823
             H     P  + GLS L  L +   ++  +    L  L  L LLD+S++     I +  
Sbjct: 75  NIHATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKI 132

Query: 824 DN----TTLHERYNNG-SSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRV 878
           +      ++   YN   + + P +T                L                  
Sbjct: 133 NTLPKVNSIDLSYNGAITDIMPLKT----------------LPE---------------- 160

Query: 879 PSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAG 918
              L  L++  +  +      I +  K+  L      + G
Sbjct: 161 ---LKSLNIQFDG-VHDYRG-IEDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 43.4 bits (103), Expect = 1e-04
 Identities = 14/89 (15%), Positives = 35/89 (39%), Gaps = 4/89 (4%)

Query: 882 LSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLS 941
           L+ + L+    +  +   I     I+ L +++ +      +  S L N+E L +    ++
Sbjct: 46  LTYITLANIN-VTDLTG-IEYAHNIKDLTINNIHATNY--NPISGLSNLERLRIMGKDVT 101

Query: 942 WKIPYQLVELNTLAVFSVAYNNLSGKIPE 970
                 L  L +L +  ++++     I  
Sbjct: 102 SDKIPNLSGLTSLTLLDISHSAHDDSILT 130

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 83.5 bits (207), Expect = 1e-17
 Identities = 39/197 (19%), Positives = 67/197 (34%), Gaps = 27/197 (13%)

Query: 100 FQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILSSLARLSSLTSLD 159
                  +L    +        L     LS ++  N   +   +  L+ +   ++L  L 
Sbjct: 18  LANAVKQNLGKQSV------TDLVSQKELSGVQNFNGDNSNIQS--LAGMQFFTNLKELH 69

Query: 160 LSANRLKGSIDIKGPKRLSRLNNLKVFDLSGNLFNNSILSSLARLSSLRSLLLYDNRLEG 219
           LS N++    D+     L  L  L+   ++ N   N  L+ +     L  L L +N L  
Sbjct: 70  LSHNQIS---DLSP---LKDLTKLEELSVNRNRLKN--LNGIPSA-CLSRLFLDNNELR- 119

Query: 220 SIDVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGIRDGSKLLQSMGS 279
             D      L NLE L +  N++ +         L KL  L L    I +       +  
Sbjct: 120 --DTDSLIHLKNLEILSIRNNKLKSIV---MLGFLSKLEVLDLHGNEITN----TGGLTR 170

Query: 280 FPSLNTLDLSYNNFTET 296
              +N +DL+       
Sbjct: 171 LKKVNWIDLTGQKCVNE 187

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 75.8 bits (187), Expect = 3e-15
 Identities = 41/203 (20%), Positives = 71/203 (34%), Gaps = 26/203 (12%)

Query: 122 LERLSRLSNLKMLNLVGNLFNNSILSSLARLSSLTSLDLSANRLKGSIDIKGPKRLSRLN 181
           +     L+N    NL      +  L S   LS + + +   + ++    + G   +    
Sbjct: 12  VFPDPGLANAVKQNLGKQSVTD--LVSQKELSGVQNFNGDNSNIQ---SLAG---MQFFT 63

Query: 182 NLKVFDLSGNLFNNSILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNE 241
           NLK   LS N    S LS L  L+ L  L +  NR    +        + L  L +  NE
Sbjct: 64  NLKELHLSHN--QISDLSPLKDLTKLEELSVNRNR----LKNLNGIPSACLSRLFLDNNE 117

Query: 242 IDNFEVPQACSGLRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTETVTTTT 301
           + + +   +   L+ L  L +    ++     +  +G    L  LDL  N  T      T
Sbjct: 118 LRDTD---SLIHLKNLEILSIRNNKLKS----IVMLGFLSKLEVLDLHGNEITN-----T 165

Query: 302 QGFPHFKSLKELYMDDARIALNT 324
            G    K +  + +   +     
Sbjct: 166 GGLTRLKKVNWIDLTGQKCVNEP 188

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 72.4 bits (178), Expect = 6e-14
 Identities = 35/243 (14%), Positives = 77/243 (31%), Gaps = 34/243 (13%)

Query: 194 NNSI--LSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQAC 251
              I  +     L++     L    +    D+     LS ++  +   + I +       
Sbjct: 6   PTPINQVFPDPGLANAVKQNLGKQSVT---DLVSQKELSGVQNFNGDNSNIQSLA---GM 59

Query: 252 SGLRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTETVTTTTQGFPHFKSLK 311
                L  LHL    I D    L  +     L  L ++ N                  L 
Sbjct: 60  QFFTNLKELHLSHNQISD----LSPLKDLTKLEELSVNRNRLKNLNGIP------SACLS 109

Query: 312 ELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMAD 371
            L++D+  +    S        + +++ LS+ N+ + +        L  L  L+ L +  
Sbjct: 110 RLFLDNNELRDTDSL-----IHLKNLEILSIRNNKLKSIV-----MLGFLSKLEVLDLHG 159

Query: 372 NDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEP 431
           N++  +    L  +  +  +D++  +      + P+ +   +       +     IS   
Sbjct: 160 NEITNTGG--LTRLKKVNWIDLTGQK----CVNEPVKYQPELYITNTVKDPDGRWISPYY 213

Query: 432 LFN 434
           + N
Sbjct: 214 ISN 216

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 47.7 bits (114), Expect = 8e-06
 Identities = 36/267 (13%), Positives = 73/267 (27%), Gaps = 72/267 (26%)

Query: 689 IMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKE 748
           I     I    P     L      ++   +++       D V  +               
Sbjct: 3   IQRPTPINQVFPDP--GLANAVKQNLGKQSVT-------DLVSQK--------------- 38

Query: 749 GTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLL 808
                   +   +   +++  ++   +   + L  L L+HN +    P  L  L +L+ L
Sbjct: 39  ----ELSGVQNFNGDNSNIQ-SLAG-MQFFTNLKELHLSHNQISDLSP--LKDLTKLEEL 90

Query: 809 DLSNNNLHGHIPSCFDN-TTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTT 867
            ++ N L           + L    N                                  
Sbjct: 91  SVNRNRLKNLNGIPSACLSRLFLDNNELRDTDSLIHL----------------------- 127

Query: 868 KSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNL 927
                         L  L +  N+ +  I   +G L+K++ L+L  N +        + L
Sbjct: 128 ------------KNLEILSIRNNK-LKSIVM-LGFLSKLEVLDLHGNEITNTGG--LTRL 171

Query: 928 RNIESLDLSYNKLSWKIPYQLVELNTL 954
           + +  +DL+  K   +      EL   
Sbjct: 172 KKVNWIDLTGQKCVNEPVKYQPELYIT 198

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 45.8 bits (109), Expect = 4e-05
 Identities = 33/221 (14%), Positives = 70/221 (31%), Gaps = 39/221 (17%)

Query: 509 LENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFN 568
           ++  T L++L L ++ +      P+    +L  L V++N  +    +      + L+   
Sbjct: 59  MQFFTNLKELHLSHNQISDLS--PLKDLTKLEELSVNRNRLKNLNGIP----SACLSRLF 112

Query: 569 ISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMF 628
           +  N L      S  ++  L+ L + NN+L             S+  L            
Sbjct: 113 LDNNEL--RDTDSLIHLKNLEILSIRNNKLK------------SIVMLG----------- 147

Query: 629 SRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHI 688
                L+ L  L L GN  +      L++   +  + L+      +  ++   L +   +
Sbjct: 148 ----FLSKLEVLDLHGNE-ITNTG-GLTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTV 201

Query: 689 IMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDF 729
             P      P  +            +       +    Y F
Sbjct: 202 KDPDGRWISPYYIS--NGGSYVDGCVLWELPVYTDEVSYKF 240

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 83.6 bits (207), Expect = 4e-17
 Identities = 53/348 (15%), Positives = 112/348 (32%), Gaps = 65/348 (18%)

Query: 103 LESLDLRDNDIAGCVENEG----LERLSRLSNLKMLNLVGNLFNN----SILSSLARLSS 154
           +E   L+ + I      E        L    ++K + L GN         +  ++A    
Sbjct: 6   IEGKSLKLDAI----TTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKD 61

Query: 155 LTSLDLSANRLKGSIDIKGPKRLSRLNNLKVFDLSGNLFNNSILSSLARLSSLRSLLLYD 214
           L   + S     G +  + P+ L                   +L +L +   L ++ L D
Sbjct: 62  LEIAEFSDIFT-GRVKDEIPEALR-----------------LLLQALLKCPKLHTVRLSD 103

Query: 215 NRLEGSIDVKEFDSL----SNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGIRDG 270
           N   G    +         + LE L +  N +      +    L++L+     +      
Sbjct: 104 NAF-GPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNA---- 158

Query: 271 SKLLQSMGSFPSLNTLDLSYNNFT-ETVTTTTQGFPHFKSLKELYMDDARIALNTSFLQI 329
                     P L ++    N     ++    + F   + L  + M    I        +
Sbjct: 159 ----------PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIR-PEGIEHL 207

Query: 330 IGE---SMPSIQYLSLSNSSVSNN-SRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANM 385
           + E       ++ L L +++ ++  S  L   L    +L+EL + D  L       + + 
Sbjct: 208 LLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDA 267

Query: 386 ------TSLRILDVSSNQL----IGSISSSPLIHLTSIEDLILSDNHF 423
                   L+ L +  N++    + ++ +     +  +  L L+ N F
Sbjct: 268 FSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF 315

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 74.7 bits (184), Expect = 4e-14
 Identities = 56/336 (16%), Positives = 96/336 (28%), Gaps = 90/336 (26%)

Query: 101 QQLESLDLRDNDI--AGCVENEGL-ERLSRLSNLKMLNLVGNLFNN----------SILS 147
             ++ + L  N I          L E ++   +L++                     +L 
Sbjct: 32  DSVKEIVLSGNTIGTEAA---RWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQ 88

Query: 148 SLARLSSLTSLDLSANRL--KGSIDIKGPKRLSRLNNLKVFDLSGN-------------L 192
           +L +   L ++ LS N         +     LS+   L+   L  N             L
Sbjct: 89  ALLKCPKLHTVRLSDNAFGPTAQEPLI--DFLSKHTPLEHLYLHNNGLGPQAGAKIARAL 146

Query: 193 FNNSILSSLARLSSLRSLLLYDNRL--EGSIDV-KEFDSLSNLEELDMSYNEIDNFEVPQ 249
              ++         LRS++   NRL      +  K F S   L  + M  N I    +  
Sbjct: 147 QELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEH 206

Query: 250 A-CSGLRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTET-VTTTTQGFPHF 307
               GL                            L  LDL  N FT    +        +
Sbjct: 207 LLLEGLAYC-----------------------QELKVLDLQDNTFTHLGSSALAIALKSW 243

Query: 308 KSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQEL 367
            +L+EL ++D  +            S      +  + S + N              LQ L
Sbjct: 244 PNLRELGLNDCLL------------SARGAAAVVDAFSKLENIG------------LQTL 279

Query: 368 HMADNDLRGSLPWCLA-----NMTSLRILDVSSNQL 398
            +  N++       L       M  L  L+++ N+ 
Sbjct: 280 RLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF 315

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 70.5 bits (173), Expect = 8e-13
 Identities = 45/230 (19%), Positives = 69/230 (30%), Gaps = 41/230 (17%)

Query: 101 QQLESLDLRDNDIAGCVENEGLERLSRL----SNLKMLNLVGN-------------LFNN 143
            +L ++ L DN           E L       + L+ L L  N             L   
Sbjct: 94  PKLHTVRLSDNAF----GPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQEL 149

Query: 144 SILSSLARLSSLTSLDLSANRL--KGSIDIKGPKRLSRLNNLKVFDLSGNLFNNS----- 196
           ++         L S+    NRL      +    K       L    +  N          
Sbjct: 150 AVNKKAKNAPPLRSIICGRNRLENGSMKEWA--KTFQSHRLLHTVKMVQNGIRPEGIEHL 207

Query: 197 ILSSLARLSSLRSLLLYDNRL--EGSIDVKE-FDSLSNLEELDMSYNEIDNFEVPQACSG 253
           +L  LA    L+ L L DN     GS  +     S  NL EL ++   +           
Sbjct: 208 LLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDA 267

Query: 254 LRKLSYLHLLRVGIRD-------GSKLLQSMGS-FPSLNTLDLSYNNFTE 295
             KL  + L  + ++           L   +    P L  L+L+ N F+E
Sbjct: 268 FSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE 317

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 63.2 bits (154), Expect = 2e-10
 Identities = 47/267 (17%), Positives = 85/267 (31%), Gaps = 62/267 (23%)

Query: 509 LENNTKLRQLSLVNDSL-------VGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDIL 561
           L  +  ++++ L  +++       +      I S K L + + S + F G +  EI + L
Sbjct: 28  LLEDDSVKEIVLSGNTIGTEAARWLSEN---IASKKDLEIAEFS-DIFTGRVKDEIPEAL 83

Query: 562 ----------SRLTVFNISMNAL--DG--SIPSSFGNMNFLQFLDLSNNQLTGE------ 601
                      +L    +S NA        +         L+ L L NN L  +      
Sbjct: 84  RLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIA 143

Query: 602 ------IPEHLAMGCVSLRSLALSNNNLE-------GHMFSRNFNLTNLIWLQLEGNHF- 647
                      A     LRS+    N LE          F  +     L  +++  N   
Sbjct: 144 RALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSH---RLLHTVKMVQNGIR 200

Query: 648 ----VGEIPQSLSKCSSLQGLFLSNNSLSGK----IPRWLGNLTVLRHIIMPKNHI--EG 697
                  + + L+ C  L+ L L +N+ +      +   L +   LR + +    +   G
Sbjct: 201 PEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARG 260

Query: 698 PIP----LEFCQLRILQILDISDNNIS 720
                      +   LQ L +  N I 
Sbjct: 261 AAAVVDAFSKLENIGLQTLRLQYNEIE 287

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 57.4 bits (139), Expect = 1e-08
 Identities = 48/272 (17%), Positives = 80/272 (29%), Gaps = 55/272 (20%)

Query: 584 NMNFLQFLDLSNNQLTGEIPEHLAMG---CVSLRSLALSNNNL-----EGHMFSRNF--- 632
             + ++ + LS N +  E    L+        L     S+        E     R     
Sbjct: 30  EDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQA 89

Query: 633 --NLTNLIWLQLEGNHF----VGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLR 686
                 L  ++L  N F       +   LSK + L+ L+L NN L  +    +     L+
Sbjct: 90  LLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIAR--ALQ 147

Query: 687 HIIMPKNHIEGPIPLEFCQLRILQILDISDNNI--------SGSLPSCYDFVCIEQVHLS 738
            + + K     P          L+ +    N +        + +  S      +  V + 
Sbjct: 148 ELAVNKKAKNAP---------PLRSIICGRNRLENGSMKEWAKTFQSH---RLLHTVKMV 195

Query: 739 KNMLHGQ-----LKEGTFFNCLTLMILDLSYNHLNGN----IPDRVDGLSQLSYLILAHN 789
           +N +  +     L EG    C  L +LDL  N         +   +     L  L L   
Sbjct: 196 QNGIRPEGIEHLLLEG-LAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDC 254

Query: 790 NLEGE------VPIQLCRLNQLQLLDLSNNNL 815
            L                   LQ L L  N +
Sbjct: 255 LLSARGAAAVVDAFSKLENIGLQTLRLQYNEI 286

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 55.5 bits (134), Expect = 5e-08
 Identities = 51/319 (15%), Positives = 96/319 (30%), Gaps = 65/319 (20%)

Query: 462 NFQLQSLLLSS---GYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWL---LENNTKL 515
            F ++   L        D  +    L     ++ + LS   +  E   WL   + +   L
Sbjct: 3   RFSIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDL 62

Query: 516 RQLSLVNDSLVGPFRLPI-----------HSHKQLRLLDVSKNNFQGHIPLEIGDILSR- 563
                 +D   G  +  I               +L  + +S N F       + D LS+ 
Sbjct: 63  EIAEF-SDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKH 121

Query: 564 --LTVFNISMN------------ALDGSIPSSFGNMNF-LQFLDLSNNQLTGEIPEHLAM 608
             L    +  N            AL     +        L+ +    N+L     +  A 
Sbjct: 122 TPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAK 181

Query: 609 G---CVSLRSLALSNNNLE--------GHMFSRNFNLTNLIWLQLEGNHF----VGEIPQ 653
                  L ++ +  N +             +       L  L L+ N F       +  
Sbjct: 182 TFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYC---QELKVLDLQDNTFTHLGSSALAI 238

Query: 654 SLSKCSSLQGLFLSNNSLS-------GKIPRWLGNLTVLRHIIMPKNHI--EGPIPLEFC 704
           +L    +L+ L L++  LS             L N+  L+ + +  N I  +    L+  
Sbjct: 239 ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIG-LQTLRLQYNEIELDAVRTLKTV 297

Query: 705 ---QLRILQILDISDNNIS 720
              ++  L  L+++ N  S
Sbjct: 298 IDEKMPDLLFLELNGNRFS 316

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 53.9 bits (130), Expect = 2e-07
 Identities = 41/178 (23%), Positives = 66/178 (37%), Gaps = 31/178 (17%)

Query: 94  ASLFTPFQQLESLDLRDNDIAGCVENEGLER-----LSRLSNLKMLNLVGNLFNN----S 144
           A  F   + L ++ +  N I      EG+E      L+    LK+L+L  N F +    +
Sbjct: 180 AKTFQSHRLLHTVKMVQNGI----RPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSA 235

Query: 145 ILSSLARLSSLTSLDLSANRL--KGSIDIKGPKRLSRLNN--LKVFDLSGNLFNNSILSS 200
           +  +L    +L  L L+   L  +G+  +      S+L N  L+   L  N      + +
Sbjct: 236 LAIALKSWPNLRELGLNDCLLSARGAAAVV--DAFSKLENIGLQTLRLQYNEIELDAVRT 293

Query: 201 LAR-----LSSLRSLLLYDNRL--EGSI-----DVKEFDSLSNLEELDMSYNEIDNFE 246
           L       +  L  L L  NR   E  +     +V        L+ELD      D  E
Sbjct: 294 LKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGELDELDDMEELTDEEE 351

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 52.4 bits (126), Expect = 4e-07
 Identities = 48/328 (14%), Positives = 107/328 (32%), Gaps = 57/328 (17%)

Query: 336 SIQYLSLSNSSVSNNS-RTLDQGLCPLVHLQELHMADNDL--RG--SLPWCLANMTSLRI 390
           SI+  SL   +++    +++   L     ++E+ ++ N +       L   +A+   L I
Sbjct: 5   SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEI 64

Query: 391 LDVSSNQLIGSIS----------SSPLIHLTSIEDLILSDNHF----QIPISLEPLFNHS 436
            + S     G +              L+    +  + LSDN F    Q P+  + L  H+
Sbjct: 65  AEFSDIF-TGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLI-DFLSKHT 122

Query: 437 RLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLS 496
            L+     NN +  +                  ++   ++     K       L  +   
Sbjct: 123 PLEHLYLHNNGLGPQAGAK--------------IARALQELAVNKKAKNAPP-LRSIICG 167

Query: 497 HIKMNEEFPNWL---LENNTKLRQLSLVNDSL-----VGPFRLPIHSHKQLRLLDVSKNN 548
             ++            +++  L  + +V + +            +   ++L++LD+  N 
Sbjct: 168 RNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNT 227

Query: 549 FQGHIPLEIGDILSR---LTVFNISMNALDG----SIPSSFGNMNF--LQFLDLSNNQLT 599
           F       +   L     L    ++   L      ++  +F  +    LQ L L  N++ 
Sbjct: 228 FTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIE 287

Query: 600 GE----IPEHLAMGCVSLRSLALSNNNL 623
            +    +   +      L  L L+ N  
Sbjct: 288 LDAVRTLKTVIDEKMPDLLFLELNGNRF 315

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 48.6 bits (116), Expect = 8e-06
 Identities = 33/229 (14%), Positives = 73/229 (31%), Gaps = 34/229 (14%)

Query: 254 LRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTET-VTTTTQGFPHFKSLKE 312
           +   S L L  +   D   +   +    S+  + LS N          ++     K L+ 
Sbjct: 6   IEGKS-LKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEI 64

Query: 313 LYMDDARI----ALNTSFLQIIGESM---PSIQYLSLSNSSVSNNS-RTLDQGLCPLVHL 364
               D             L+++ +++   P +  + LS+++    +   L   L     L
Sbjct: 65  AEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPL 124

Query: 365 QELHMADNDL-------------RGSLPWCLANMTSLRILDVSSNQLIGSIS----SSPL 407
           + L++ +N L               ++     N   LR +    N+ + + S    +   
Sbjct: 125 EHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR-LENGSMKEWAKTF 183

Query: 408 IHLTSIEDLILSDNHF-----QIPISLEPLFNHSRLKIFDAENNEINAE 451
                +  + +  N       +  +  E L     LK+ D ++N     
Sbjct: 184 QSHRLLHTVKMVQNGIRPEGIEHLLL-EGLAYCQELKVLDLQDNTFTHL 231

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 47.4 bits (113), Expect = 2e-05
 Identities = 65/364 (17%), Positives = 107/364 (29%), Gaps = 89/364 (24%)

Query: 277 MGSFPSLNTLDLSYNNFT-ETVTTTTQGFPHFKSLKELYMDDARIALNTSFLQIIGE--- 332
           M  F S+    L  +  T E   +         S+KE+ +    I   T   + + E   
Sbjct: 1   MARF-SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTI--GTEAARWLSENIA 57

Query: 333 SMPSIQYLSLSNSSVSN-------NSRTLDQGLCPLVHLQELHMADNDL--RGSLPWC-- 381
           S   ++    S+              R L Q L     L  + ++DN        P    
Sbjct: 58  SKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDF 117

Query: 382 LANMTSLRILDVSSNQ------------LIGSISSSPLIHLTSIEDLILSDNHFQ----I 425
           L+  T L  L + +N             L     +    +   +  +I   N  +     
Sbjct: 118 LSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMK 177

Query: 426 PISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLY 485
             + +   +H  L       N I  E IE              LL  G          L 
Sbjct: 178 EWA-KTFQSHRLLHTVKMVQNGIRPEGIEH-------------LLLEG----------LA 213

Query: 486 NQHDLEYVRLSHIKMNEEFPNWL---LENNTKLRQLSLVNDSLVGP-------FRLPIHS 535
              +L+ + L          + L   L++   LR+L L ND L+                
Sbjct: 214 YCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGL-NDCLLSARGAAAVVDAFSKLE 272

Query: 536 HKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSN 595
           +  L+ L +  N        EI            ++  L   I      M  L FL+L+ 
Sbjct: 273 NIGLQTLRLQYN--------EIELD---------AVRTLKTVIDE---KMPDLLFLELNG 312

Query: 596 NQLT 599
           N+ +
Sbjct: 313 NRFS 316

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 45.1 bits (107), Expect = 9e-05
 Identities = 32/168 (19%), Positives = 64/168 (38%), Gaps = 28/168 (16%)

Query: 94  ASLFTPFQQLESLDLRDNDIAGCVENEGLERLSR----LSNLKMLNLVGNLFNN----SI 145
                  Q+L+ LDL+DN       + G   L+       NL+ L L   L +     ++
Sbjct: 209 LEGLAYCQELKVLDLQDNTF----THLGSSALAIALKSWPNLRELGLNDCLLSARGAAAV 264

Query: 146 LSSLARLS--SLTSLDLSANRLKGSIDIKGPKRLSR-----LNNLKVFDLSGNLFNNS-- 196
           + + ++L    L +L L  N     I++   + L       + +L   +L+GN F+    
Sbjct: 265 VDAFSKLENIGLQTLRLQYNE----IELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320

Query: 197 ILSSLAR-LSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEID 243
           ++  +    S+     L +      +  +E +     EE +    E +
Sbjct: 321 VVDEIREVFSTRGRGELDELDDMEELTDEEEEDE--EEEAESQSPEPE 366

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 78.5 bits (194), Expect = 6e-16
 Identities = 56/232 (24%), Positives = 93/232 (40%), Gaps = 42/232 (18%)

Query: 129 SNLKMLNLVGNLFNNSILSSLARLSSLTSLDLSANRLKGSIDIKGPKRLSRLNNLKVFDL 188
            + K L+L  N   +    S      L  LDLS   ++ +I+         L++L    L
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIE---DGAYQSLSHLSTLIL 83

Query: 189 SGNLFNNSILSSLA-----RLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEID 243
           +GN      + SLA      LSSL+ L+  +  L  S++      L  L+EL++++N I 
Sbjct: 84  TGNP-----IQSLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQ 137

Query: 244 NFEVPQACSGLRKLSYLHL-------LRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTET 296
           +F++P+  S L  L +L L       +          +  +       +LDLS N     
Sbjct: 138 SFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLL-----NLSLDLSLNPMNF- 191

Query: 297 VTTTTQGFPH--FK--SLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSN 344
                       FK   LKEL +D  ++    S    I + + S+Q + L  
Sbjct: 192 -------IQPGAFKEIRLKELALDTNQL---KSVPDGIFDRLTSLQKIWLHT 233

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 75.0 bits (185), Expect = 7e-15
 Identities = 53/236 (22%), Positives = 95/236 (40%), Gaps = 31/236 (13%)

Query: 559 DILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLAL 618
           ++       ++S N L      SF +   LQ LDLS  ++   I +        L +L L
Sbjct: 25  NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLIL 83

Query: 619 SNNNL---EGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSL-SGK 674
           + N +       FS    L++L  L     +        +    +L+ L +++N + S K
Sbjct: 84  TGNPIQSLALGAFS---GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFK 140

Query: 675 IPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQ 734
           +P +  NLT L H+ +  N I+     +   L  + +L++                    
Sbjct: 141 LPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNL-------------------S 181

Query: 735 VHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRV-DGLSQLSYLILAHN 789
           + LS N ++  ++ G F   + L  L L  N L  ++PD + D L+ L  + L  N
Sbjct: 182 LDLSLNPMN-FIQPGAFKE-IRLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 73.5 bits (181), Expect = 3e-14
 Identities = 54/232 (23%), Positives = 90/232 (38%), Gaps = 34/232 (14%)

Query: 205 SSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLR 264
            S ++L L  N L   +    F S   L+ LD+S  EI   E   A   L  LS L L  
Sbjct: 28  FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIE-DGAYQSLSHLSTLIL-- 83

Query: 265 VGIRDGSKLLQSM--GSF---PSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDAR 319
                    +QS+  G+F    SL  L     N     +       H K+LKEL +    
Sbjct: 84  -----TGNPIQSLALGAFSGLSSLQKLVAVETNLA---SLENFPIGHLKTLKELNVAHNL 135

Query: 320 IALNTSFLQIIG--ESMPSIQYLSLSNSSVSNNSRTLDQG-LCPLVHLQ----ELHMADN 372
           I       ++     ++ ++++L LS+    N  +++    L  L  +      L ++ N
Sbjct: 136 I----QSFKLPEYFSNLTNLEHLDLSS----NKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187

Query: 373 DLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQ 424
            +   +         L+ L + +NQL  S+       LTS++ + L  N + 
Sbjct: 188 PMN-FIQPGAFKEIRLKELALDTNQL-KSVPDGIFDRLTSLQKIWLHTNPWD 237

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 73.1 bits (180), Expect = 3e-14
 Identities = 48/238 (20%), Positives = 86/238 (36%), Gaps = 41/238 (17%)

Query: 709 LQILDISDNNISGSLPSC--YDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNH 766
            + LD+S N +   L S   + F  ++ + LS+  +   +++G + +   L  L L+ N 
Sbjct: 30  TKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNP 87

Query: 767 LNGNIPDRV-DGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHG-HIPSCFD 824
           +  ++      GLS L  L+    NL       +  L  L+ L++++N +    +P  F 
Sbjct: 88  IQ-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS 146

Query: 825 N----TTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPS 880
           N      L    N   S+                             +         +P 
Sbjct: 147 NLTNLEHLDLSSNKIQSIYC--------------------TDLRVLHQ---------MPL 177

Query: 881 LLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYN 938
           L   LDLS N  +  I P      +++ L L  N L       F  L +++ + L  N
Sbjct: 178 LNLSLDLSLNP-MNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 71.5 bits (176), Expect = 1e-13
 Identities = 51/252 (20%), Positives = 88/252 (34%), Gaps = 53/252 (21%)

Query: 153 SSLTSLDLSANRLKGSIDIKGPKRLSRLNNLKVFDLSGNLFNNSILSSL-----ARLSSL 207
            S  +LDLS N L+  +             L+V DLS        + ++       LS L
Sbjct: 28  FSTKNLDLSFNPLR-HLG---SYSFFSFPELQVLDLSRC-----EIQTIEDGAYQSLSHL 78

Query: 208 RSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGI 267
            +L+L  N ++ S+ +  F  LS+L++L      + + E       L+ L  L++    I
Sbjct: 79  STLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLASLE-NFPIGHLKTLKELNVAHNLI 136

Query: 268 RDGSKLLQSMGSF---PSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDARIALNT 324
           +      +    F    +L  LDLS N      +           +  L +         
Sbjct: 137 QS----FKLPEYFSNLTNLEHLDLSSNKIQ---SIYCTDLRVLHQMPLLNLS-------- 181

Query: 325 SFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLAN 384
                          L LS     N    +  G    + L+EL +  N L+         
Sbjct: 182 ---------------LDLSL----NPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDR 222

Query: 385 MTSLRILDVSSN 396
           +TSL+ + + +N
Sbjct: 223 LTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 71.5 bits (176), Expect = 1e-13
 Identities = 54/210 (25%), Positives = 85/210 (40%), Gaps = 28/210 (13%)

Query: 92  LNASLFTPFQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILSSLA- 150
           L +  F  F +L+ LDL   +I      +G      LS+L  L L GN      + SLA 
Sbjct: 43  LGSYSFFSFPELQVLDLSRCEIQ--TIEDGA--YQSLSHLSTLILTGNP-----IQSLAL 93

Query: 151 ----RLSSLTSLDLSANRLKGSIDIKGPKRLSRLNNLKVFDLSGNLFNNSILSSL-ARLS 205
                LSSL  L      L  S++      +  L  LK  +++ NL  +  L    + L+
Sbjct: 94  GAFSGLSSLQKLVAVETNLA-SLE---NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT 149

Query: 206 SLRSLLLYDNRLEGSIDVKEFDSLSNLE----ELDMSYNEIDNFEVPQACSGLRKLSYLH 261
           +L  L L  N+++ SI   +   L  +      LD+S N ++  + P A   + +L  L 
Sbjct: 150 NLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQ-PGAFKEI-RLKELA 206

Query: 262 LLRVGIRDGSKLLQSMGSFPSLNTLDLSYN 291
           L    ++  S          SL  + L  N
Sbjct: 207 LDTNQLK--SVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 57.3 bits (139), Expect = 6e-09
 Identities = 38/189 (20%), Positives = 63/189 (33%), Gaps = 58/189 (30%)

Query: 756 TLMILDLSYNHLNGNIPDRV-DGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNN 814
           +   LDLS+N L  ++         +L  L L+   ++         L+ L  L L+ N 
Sbjct: 29  STKNLDLSFNPL-RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 815 LHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTY 874
           +                     SL                       +F   +       
Sbjct: 88  I--------------------QSLAL--------------------GAFSGLSS------ 101

Query: 875 QGRVPSLLSGLDLSCNRLIGHIPPQI-GNLTKIQTLNLSHNNL-AGPIPSTFSNLRNIES 932
                  L  L       +  +     G+L  ++ LN++HN + +  +P  FSNL N+E 
Sbjct: 102 -------LQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEH 153

Query: 933 LDLSYNKLS 941
           LDLS NK+ 
Sbjct: 154 LDLSSNKIQ 162

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 53.8 bits (130), Expect = 1e-07
 Identities = 54/266 (20%), Positives = 97/266 (36%), Gaps = 65/266 (24%)

Query: 362 VHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDN 421
              + L ++ N LR    +   +   L++LD+S  + I +I       L+ +  LIL+ N
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGN 86

Query: 422 HFQIPISLEP-LFNH-SRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGIT 479
             Q   SL    F+  S L+   A    +    +E+  +      L+ L ++        
Sbjct: 87  PIQ---SLALGAFSGLSSLQKLVAVETNL--ASLENFPIGHLK-TLKELNVA-------- 132

Query: 480 FPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQL 539
                +N        +   K+ E F                   +L             L
Sbjct: 133 -----HNL-------IQSFKLPEYF------------------SNLT-----------NL 151

Query: 540 RLLDVSKNNFQGHIPLEIGDILSRLTVFNISM----NALDGSIPSSFGNMNFLQFLDLSN 595
             LD+S N  Q  I      +L ++ + N+S+    N ++   P +F  +  L+ L L  
Sbjct: 152 EHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LKELALDT 209

Query: 596 NQLTGEIPEHLAMGCVSLRSLALSNN 621
           NQL   +P+ +     SL+ + L  N
Sbjct: 210 NQLK-SVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 46.9 bits (112), Expect = 2e-05
 Identities = 33/147 (22%), Positives = 56/147 (38%), Gaps = 38/147 (25%)

Query: 280 FPSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDARIALNTSFLQIIGESMPSIQY 339
             S   LDLS+N      + +      F S  EL                        Q 
Sbjct: 27  PFSTKNLDLSFNPLRHLGSYS------FFSFPEL------------------------QV 56

Query: 340 LSLSNSSVSNNSRTLDQGLC-PLVHLQELHMADNDLRGSLPW-CLANMTSLRILDVSSNQ 397
           L LS        +T++ G    L HL  L +  N ++ SL     + ++SL+ L      
Sbjct: 57  LDLSR----CEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETN 111

Query: 398 LIGSISSSPLIHLTSIEDLILSDNHFQ 424
            + S+ + P+ HL ++++L ++ N  Q
Sbjct: 112 -LASLENFPIGHLKTLKELNVAHNLIQ 137

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 74.1 bits (182), Expect = 4e-14
 Identities = 45/282 (15%), Positives = 89/282 (31%), Gaps = 45/282 (15%)

Query: 540 RLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLT 599
           R+    ++     IP    D+          +  L      +F     L+ +++S N + 
Sbjct: 12  RVFLCQESKVT-EIP---SDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVL 67

Query: 600 GEIPEHLAMGCVSLRSLALSNNN----LEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQ-S 654
             I   +      L  + +   N    +    F    NL NL +L +        +P   
Sbjct: 68  EVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQ---NLPNLQYLLISNTGIK-HLPDVH 123

Query: 655 LSKCSSLQGLFLSNNSLSGKIP-RWLGNLTV-LRHIIMPKNHIEGPIPLEFCQLRILQIL 712
                    L + +N     I       L+     + + KN I+      F   ++ ++ 
Sbjct: 124 KIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELN 183

Query: 713 DISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIP 772
              +NN+                         +L    F      +ILD+S   ++ ++P
Sbjct: 184 LSDNNNLE------------------------ELPNDVFHGASGPVILDISRTRIH-SLP 218

Query: 773 DRV-DGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNN 813
               + L +L        NL+ ++P  L +L  L    L+  
Sbjct: 219 SYGLENLKKLRARST--YNLK-KLPT-LEKLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 69.5 bits (170), Expect = 1e-12
 Identities = 39/230 (16%), Positives = 71/230 (30%), Gaps = 48/230 (20%)

Query: 92  LNASLFTPFQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILS---- 147
           +    F+ F  LE +++  ND+   +E +    L +L  +++         N++L     
Sbjct: 45  IQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK------ANNLLYINPE 98

Query: 148 SLARLSSLTSLDLSANRLKGSIDIKGPKRLSRLNNLKVFDLSGN---------------- 191
           +   L +L  L +S   +K  +               + D+  N                
Sbjct: 99  AFQNLPNLQYLLISNTGIK-HLP---DVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSF 154

Query: 192 ------LFNNSILS----SLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNE 241
                 L  N I      +          L  +N LE  +    F   S    LD+S   
Sbjct: 155 ESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTR 213

Query: 242 IDNFEVPQACSGLRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYN 291
           I +         L+KL       +      K L ++    +L    L+Y 
Sbjct: 214 IHSLP-SYGLENLKKLRARSTYNL------KKLPTLEKLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 68.3 bits (167), Expect = 3e-12
 Identities = 51/300 (17%), Positives = 80/300 (26%), Gaps = 77/300 (25%)

Query: 650 EIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLE-FCQLRI 708
           EIP  L    +   L      L             L  I + +N +   I  + F  L  
Sbjct: 23  EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPK 80

Query: 709 LQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLN 768
           L  + I   N    +                           F N   L  L +S   + 
Sbjct: 81  LHEIRIEKANNLLYINP-----------------------EAFQNLPNLQYLLISNTGIK 117

Query: 769 GNIPDRV-DGLSQLSYLILAHNN----LEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCF 823
            ++PD       Q   L +  N     +E    + L    +  +L L+ N +     S F
Sbjct: 118 -HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLS--FESVILWLNKNGIQEIHNSAF 174

Query: 824 DNTTLHE----RYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVP 879
           + T L E      NN   L                      + F   +            
Sbjct: 175 NGTQLDELNLSDNNNLEELPN--------------------DVFHGASG----------- 203

Query: 880 SLLSGLDLSCNRLIGHIPPQI-GNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYN 938
                LD+S  R I  +P     NL K++  +  +             L  +    L+Y 
Sbjct: 204 --PVILDISRTR-IHSLPSYGLENLKKLRARSTYNLKKLPT----LEKLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 67.5 bits (165), Expect = 5e-12
 Identities = 44/274 (16%), Positives = 87/274 (31%), Gaps = 33/274 (12%)

Query: 154 SLTSLDLSANRLKGSIDIKGPKRLSRLNNLKVFDLSGNLFNNSILSSLARLSSLRSLLLY 213
           S        +++   I    P  L R  N                 + +    L  + + 
Sbjct: 10  SNRVFLCQESKVT-EI----PSDLPR--NAIELRFVLTKLRVIQKGAFSGFGDLEKIEIS 62

Query: 214 DNRLEGSIDVKEFDSLSNLEELDMS-YNEIDNFEVPQACSGLRKLSYLHLLRVGIR---D 269
            N +   I+   F +L  L E+ +   N +     P+A   L  L YL +   GI+   D
Sbjct: 63  QNDVLEVIEADVFSNLPKLHEIRIEKANNLLYIN-PEAFQNLPNLQYLLISNTGIKHLPD 121

Query: 270 GSKLLQSMGSFPSLNTLDLSYNNFTETVTTTT-QGFPHFKSLKELYMDDARIALNTSFLQ 328
             K+            LD+  N    T+   +  G         L+++   I      + 
Sbjct: 122 VHKI-----HSLQKVLLDIQDNINIHTIERNSFVGLSF--ESVILWLNKNGI----QEIH 170

Query: 329 IIGESMPSIQYLSLSNSSVSNNSRTLDQG-LCPLVHLQELHMADNDLRGSLPWCLANMTS 387
               +   +  L+LS+   +NN   L             L ++   +     + L N+  
Sbjct: 171 NSAFNGTQLDELNLSD---NNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKK 227

Query: 388 LRILDVSSNQLIGSISSSPLIHLTSIEDLILSDN 421
           LR     + + + ++       L ++ +  L+  
Sbjct: 228 LRARSTYNLKKLPTLE-----KLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 64.8 bits (158), Expect = 4e-11
 Identities = 43/253 (16%), Positives = 77/253 (30%), Gaps = 37/253 (14%)

Query: 205 SSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLR 264
            +   L     +L   I    F    +LE++++S N++         S L KL  + + +
Sbjct: 30  RNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88

Query: 265 VGIRDGSKLLQSM--GSF---PSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDAR 319
                 +  L  +   +F   P+L  L +S                H      L + D  
Sbjct: 89  ------ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVH---KIHSLQKVLLDIQD-- 137

Query: 320 IALNTSFLQIIGES-----MPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELH-MADND 373
              N + +  I  +           L L+     N  + +         L EL+   +N+
Sbjct: 138 ---NIN-IHTIERNSFVGLSFESVILWLNK----NGIQEIHNSAFNGTQLDELNLSDNNN 189

Query: 374 LRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLF 433
           L           +   ILD+S  + I S+ S  L +L  +      +        L  L 
Sbjct: 190 LEELPNDVFHGASGPVILDISRTR-IHSLPSYGLENLKKLRARSTYNL-----KKLPTLE 243

Query: 434 NHSRLKIFDAENN 446
               L        
Sbjct: 244 KLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 64.1 bits (156), Expect = 8e-11
 Identities = 40/257 (15%), Positives = 77/257 (29%), Gaps = 48/257 (18%)

Query: 709 LQILDISDNNISGSLPSC--YDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLS-YN 765
              L      +   +       F  +E++ +S+N +   ++   F N   L  + +   N
Sbjct: 32  AIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 90

Query: 766 HLNGNIPDRV-DGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPS-CF 823
           +L   I       L  L YL++++  ++    +      Q  LLD+ +N     I    F
Sbjct: 91  NLL-YINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSF 149

Query: 824 DN-----TTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRV 878
                    L    N    +                       +F+ T            
Sbjct: 150 VGLSFESVILWLNKNGIQEIHN--------------------SAFNGTQ----------- 178

Query: 879 PSLLSGLDLSCNRLIGHIPPQI-GNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSY 937
              L  L+LS N  +  +P  +    +    L++S   +         NL+ + +     
Sbjct: 179 ---LDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYN 235

Query: 938 NKLSWKIPYQLVELNTL 954
            K       +LV L   
Sbjct: 236 LK-KLPTLEKLVALMEA 251

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 56.4 bits (136), Expect = 2e-08
 Identities = 33/189 (17%), Positives = 58/189 (30%), Gaps = 12/189 (6%)

Query: 486 NQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVS 545
           N   L  +R+              +N   L+ L + N  +     +      Q  LLD+ 
Sbjct: 77  NLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQ 136

Query: 546 KNNFQGHIPLE-IGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPE 604
            N     I       +     +  ++ N +     S+F      +     NN L  E+P 
Sbjct: 137 DNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLE-ELPN 195

Query: 605 HLAMGCVSLRSLALSNNNLE---GHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSL 661
            +  G      L +S   +     +      NL  L            ++P +L K  +L
Sbjct: 196 DVFHGASGPVILDISRTRIHSLPSYGLE---NLKKLRARSTYNLK---KLP-TLEKLVAL 248

Query: 662 QGLFLSNNS 670
               L+  S
Sbjct: 249 MEASLTYPS 257

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 55.6 bits (134), Expect = 4e-08
 Identities = 41/202 (20%), Positives = 68/202 (33%), Gaps = 12/202 (5%)

Query: 489 DLEYVRLSHIKMNEEFPNWLLENNTKLRQLSL-VNDSLVGPFRLPIHSHKQLRLLDVSKN 547
                +L  I+               L ++ +  ND L         +  +L  + + K 
Sbjct: 36  RFVLTKLRVIQKGA------FSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89

Query: 548 NFQGHIPLEIGDILSRLTVFNISMNALDGSIPS-SFGNMNFLQFLDLSNNQLTGEIPEHL 606
           N   +I  E    L  L    IS   +   +P     +      LD+ +N     I  + 
Sbjct: 90  NNLLYINPEAFQNLPNLQYLLISNTGI-KHLPDVHKIHSLQKVLLDIQDNINIHTIERNS 148

Query: 607 AMGCVS-LRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQ-SLSKCSSLQGL 664
            +G       L L+ N ++  + +  FN T L  L L  N+ + E+P       S    L
Sbjct: 149 FVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVIL 207

Query: 665 FLSNNSLSGKIPRWLGNLTVLR 686
            +S   +       L NL  LR
Sbjct: 208 DISRTRIHSLPSYGLENLKKLR 229

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 55.2 bits (133), Expect = 5e-08
 Identities = 33/245 (13%), Positives = 64/245 (26%), Gaps = 59/245 (24%)

Query: 732 IEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRV-DGLSQLSYLILAHNN 790
             ++      L   +++G F     L  +++S N +   I   V   L +L  + +   N
Sbjct: 32  AIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 90

Query: 791 LEGEVPIQLCR-LNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMG 849
               +  +  + L  LQ L +SN  +                      L           
Sbjct: 91  NLLYINPEAFQNLPNLQYLLISNTGI--------------------KHLPDV-------- 122

Query: 850 GMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQI--GNLTKIQ 907
                           + +                LD+  N  I  I      G   +  
Sbjct: 123 ------------HKIHSLQ-------------KVLLDIQDNINIHTIERNSFVGLSFESV 157

Query: 908 TLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGK 967
            L L+ N +     S F+  +  E      N L           +   +  ++   +   
Sbjct: 158 ILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-S 216

Query: 968 IPERA 972
           +P   
Sbjct: 217 LPSYG 221

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 73.6 bits (181), Expect = 6e-14
 Identities = 64/337 (18%), Positives = 115/337 (34%), Gaps = 44/337 (13%)

Query: 76  VVVLDLSQTHRGEY--WYLNASLFTPFQQLESLDLRDNDIAGCVENEGLERLSRL----- 128
           V  LDLS  +        L  +       + SL+L  N +      +  + L ++     
Sbjct: 24  VTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSL----GFKNSDELVQILAAIP 79

Query: 129 SNLKMLNLVGNLFNNSILSSLARL-----SSLTSLDLSANRL--KGSIDIKGPKRLSRLN 181
           +N+  LNL GN  +      L +       ++T LDL  N    K S + K  +  S L 
Sbjct: 80  ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFK--QAFSNLP 137

Query: 182 -NLKVFDLSGNLFNNSILSSLARL-----SSLRSLLLYDNRL--EGSIDVKEFDSLSN-- 231
            ++   +L GN         L ++     +++ SL L  N L  +   ++ +F +     
Sbjct: 138 ASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPAS 197

Query: 232 LEELDMSYNEIDNFEVPQACSGLR----KLSYLHLLRVGIRD--GSKLLQSMGSFPSLNT 285
           +  LD+S N +      +           +  L+L    +       L     S   L T
Sbjct: 198 VTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQT 257

Query: 286 LDLSYNNFT----ETVTTTTQGFPHFKSLKELYMDDARI--ALNTSFLQIIGESMPSIQY 339
           + L Y+       E        FP+ + +  +  +   I  + +     +I E       
Sbjct: 258 VYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNLIRELSGKADV 317

Query: 340 LSLSNSSVSNNSR--TLDQGLCPLVHLQELHMADNDL 374
            SL N  +    +  T  + L     L+E       L
Sbjct: 318 PSLLNQCLIFAQKHQTNIEDLNIPDELRESIQTCKPL 354

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 69.4 bits (170), Expect = 2e-12
 Identities = 46/301 (15%), Positives = 97/301 (32%), Gaps = 47/301 (15%)

Query: 140 LFNNSILSSLARL--------SSLTSLDLSANRLKGSIDIKGPKRLSRL-----NNLKVF 186
           +     L   +            +TSLDLS N     +       L +       ++   
Sbjct: 1   MNYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNN----LYSISTVELIQAFANTPASVTSL 56

Query: 187 DLSGNLFNNSILSSLARL-----SSLRSLLLYDNRLEGSIDVKEF-----DSLSNLEELD 236
           +LSGN         L ++     +++ SL L  N L       E           +  LD
Sbjct: 57  NLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFL-SYKSSDELVKTLAAIPFTITVLD 115

Query: 237 MSYNEIDNFEVPQACSGLRK----LSYLHLLRVGIRD-GSKLLQSMGSFP--SLNTLDLS 289
           + +N+  +    +           ++ L+L    +    S  L  + +    ++N+L+L 
Sbjct: 116 LGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLR 175

Query: 290 YNNFT-ETVTTTTQGFPHF-KSLKELYMDDARIALN--TSFLQIIGESMPSIQYLSLSNS 345
            NN   +      +       S+  L +    + L        I       +  L+L  +
Sbjct: 176 GNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLN 235

Query: 346 SVSNNS-RTLDQGLCPLVHLQELHMADNDLRGSLPWC-------LANMTSLRILDVSSNQ 397
            +   S   L      L HLQ +++  + ++               N+  + ++D +  +
Sbjct: 236 CLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295

Query: 398 L 398
           +
Sbjct: 296 I 296

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 67.4 bits (165), Expect = 6e-12
 Identities = 59/361 (16%), Positives = 124/361 (34%), Gaps = 70/361 (19%)

Query: 101 QQLESLDLRDNDIAGCVENEGLERLSRL-----SNLKMLNLVGNLFNNSILSSLARL--- 152
             + SLDL  N++     +     L +      +++  LNL GN         L ++   
Sbjct: 22  HGVTSLDLSLNNL----YSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAA 77

Query: 153 --SSLTSLDLSANRLKGSIDIKGPKRLSRL-----NNLKVFDLSGNLFNNSILSSLARL- 204
             +++TSL+LS N     +  K    L +        + V DL  N F++   S   +  
Sbjct: 78  IPANVTSLNLSGN----FLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAF 133

Query: 205 ----SSLRSLLLYDNRL--EGSIDVKEF--DSLSNLEELDMSYNEIDNFEVPQACSGLRK 256
               +S+ SL L  N L  + S ++ +      +N+  L++  N + +    +    L  
Sbjct: 134 SNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLAS 193

Query: 257 LSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFT-ETVTTTTQGFPHFK-SLKELY 314
           +                        S+ +LDLS N    ++       F      +  L 
Sbjct: 194 IP----------------------ASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLN 231

Query: 315 MDDARI-ALNTSFLQIIGESMPSIQYLSLSNSSVSNNS----RTLDQGLCPLVHLQELHM 369
           +    +   +   L+++ +S+  +Q + L    V N S    + L      +  +  +  
Sbjct: 232 LCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDK 291

Query: 370 ADNDLRGSLPWCLANM-----TSLRILDVSSNQLI----GSISSSPLIHLTSIEDLILSD 420
              ++  S    ++N+         +  + +  LI       +   L     + + I + 
Sbjct: 292 NGKEIHPSHSIPISNLIRELSGKADVPSLLNQCLIFAQKHQTNIEDLNIPDELRESIQTC 351

Query: 421 N 421
            
Sbjct: 352 K 352

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 53.6 bits (129), Expect = 2e-07
 Identities = 53/276 (19%), Positives = 94/276 (34%), Gaps = 49/276 (17%)

Query: 588 LQFLDLSNNQLTGEIPEHLAMG----CVSLRSLALSNNNLE---GHMFSR--NFNLTNLI 638
           +  LDLS N L       L         S+ SL LS N+L         +       N+ 
Sbjct: 24  VTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVT 83

Query: 639 WLQLEGNHF----VGEIPQSLSKC-SSLQGLFLSNNSLSGKIPRWLGNL-----TVLRHI 688
            L L GN        E+ ++L+    ++  L L  N  S K               +  +
Sbjct: 84  SLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSL 143

Query: 689 IMPKNHIEGPIPLEFCQL-----RILQILDISDNNI--------SGSLPSCYDFVCIEQV 735
            +  N +      E  Q+       +  L++  NN+        +  L S      +  +
Sbjct: 144 NLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIP--ASVTSL 201

Query: 736 HLSKNMLHGQ----LKEGTFFNCLTLMILDLSYNHLNG----NIPDRVDGLSQLSYLILA 787
            LS N+L  +    L          ++ L+L  N L+G    N+    D L  L  + L 
Sbjct: 202 DLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLD 261

Query: 788 HNNLEGEVPIQ-------LCRLNQLQLLDLSNNNLH 816
           ++ ++     Q          + ++ L+D +   +H
Sbjct: 262 YDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIH 297

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 48.9 bits (117), Expect = 6e-06
 Identities = 52/362 (14%), Positives = 99/362 (27%), Gaps = 71/362 (19%)

Query: 382 LANMTSLRILDVSSNQL----IGSISSSPLIHLTSIEDLILSDNHFQ----IPISLEPLF 433
            +    +  LD+S N L       +  +      S+  L LS N         +      
Sbjct: 18  TSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAA 77

Query: 434 NHSRLKIFDAENNEINAEIIE--SHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLE 491
             + +   +   N ++ +  +    +L    F +  L L              +N    +
Sbjct: 78  IPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLG-------------WNDFSSK 124

Query: 492 YVRLSHIKMNEEFPNWLLENNTKLRQLSLVN--------DSLVGPFRLPIHSHKQLRLLD 543
                      EF          +  L+L          D L+            +  L+
Sbjct: 125 SS--------SEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILA---AIPANVNSLN 173

Query: 544 VSKNNFQGHIPLEIGDIL----SRLTVFNISMNALDGSIPSSFG-----NMNFLQFLDLS 594
           +  NN       E+   L    + +T  ++S N L     +          N +  L+L 
Sbjct: 174 LRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLC 233

Query: 595 NNQLTGEIPEHLAMG---CVSLRSLALSNNNLEG-------HMFSRNFNLTNLIWLQLEG 644
            N L G   E+L +       L+++ L  + ++         + +   N+  +I +   G
Sbjct: 234 LNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNG 293

Query: 645 NHFVGEIPQSLSK-----CSSLQGLFLSNNSLS-----GKIPRWLGNLTVLRHIIMPKNH 694
                     +S              L N  L            L     LR  I     
Sbjct: 294 KEIHPSHSIPISNLIRELSGKADVPSLLNQCLIFAQKHQTNIEDLNIPDELRESIQTCKP 353

Query: 695 IE 696
           + 
Sbjct: 354 LL 355

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 47.8 bits (114), Expect = 1e-05
 Identities = 56/362 (15%), Positives = 114/362 (31%), Gaps = 65/362 (17%)

Query: 230 SNLEELDMSYNEIDNFEVPQACSGLRK----LSYLHLLRVGIRD-GSKLLQSM--GSFPS 282
             +  LD+S N + +    +           ++ L+L    +    S  L  +      +
Sbjct: 22  HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81

Query: 283 LNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSL 342
           + +L+LS N  +             KS  EL       A+             +I  L L
Sbjct: 82  VTSLNLSGNFLSY------------KSSDELV--KTLAAIPF-----------TITVLDL 116

Query: 343 SNSSVSNNS-RTLDQGLCPL-VHLQELHMADNDLRGSLPWCLANM-----TSLRILDVSS 395
             +  S+ S     Q    L   +  L++  NDL       L  +      ++  L++  
Sbjct: 117 GWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRG 176

Query: 396 NQLIGSIS----SSPLIHL-TSIEDLILSDNHFQ----IPISLEPLFNHSRLKIFDAENN 446
           N  + S +    +  L  +  S+  L LS N         ++       + +   +   N
Sbjct: 177 NN-LASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLN 235

Query: 447 EINAEIIES-HSLTTPNFQLQSLLLSSGYRDGIT------FPKFLYNQHDLEYVRLSHIK 499
            ++   +E+   L      LQ++ L       ++            N   +  V  +  +
Sbjct: 236 CLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295

Query: 500 MNEE----FPNWLLENNTKLRQLSLVNDSLVGPFRLPIHS-----HKQLRLLDVSKNNFQ 550
           ++        N + E + K    SL+N  L+   +   +        +LR    +     
Sbjct: 296 IHPSHSIPISNLIRELSGKADVPSLLNQCLIFAQKHQTNIEDLNIPDELRESIQTCKPLL 355

Query: 551 GH 552
            H
Sbjct: 356 EH 357

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 46.2 bits (110), Expect = 4e-05
 Identities = 46/344 (13%), Positives = 102/344 (29%), Gaps = 44/344 (12%)

Query: 332 ESMPSIQYLSLSNSSVSNNS-RTLDQGLC-PLVHLQELHMADNDLRGSLPWCLANM---- 385
                +  L LS +++ + S   L Q        +  L+++ N L       L  +    
Sbjct: 19  SIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAI 78

Query: 386 -TSLRILDVSSNQL----IGSISSSPLIHLTSIEDLILSDNHFQ----IPISLEPLFNHS 436
             ++  L++S N L       +  +      +I  L L  N F                +
Sbjct: 79  PANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPA 138

Query: 437 RLKIFDAENNEINAEIIE--SHSLTTPNFQLQSLLLSS---GYRDGITFPKFLYNQHD-L 490
            +   +   N++  +  +     L      + SL L       ++     KFL +    +
Sbjct: 139 SITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASV 198

Query: 491 EYVRLSHIKMNEEFPNWLLE----NNTKLRQLSLVNDSL----VGPFRLPIHSHKQLRLL 542
             + LS   +  +    L          +  L+L  + L    +   +L   S K L+ +
Sbjct: 199 TSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTV 258

Query: 543 DVSKNNFQGHIPLEIGDILS------RLTVFNISMNALDGS----IPSSFGNMNF-LQFL 591
            +  +  +     +   + +      ++ + + +   +  S    I +    ++      
Sbjct: 259 YLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNLIRELSGKADVP 318

Query: 592 DLSNNQLTGE----IPEHLAMGCVSLRSLALSNNNLEGHMFSRN 631
            L N  L                  LR    +   L  H    +
Sbjct: 319 SLLNQCLIFAQKHQTNIEDLNIPDELRESIQTCKPLLEHHHHHH 362

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 73.3 bits (180), Expect = 8e-14
 Identities = 45/184 (24%), Positives = 71/184 (38%), Gaps = 34/184 (18%)

Query: 650 EIPQSLSKCSSLQGLFLSNNSLSGKIPRW-LGNLTVLRHIIMPKNHIEGPIPLEFCQLRI 708
            +PQSL   S    L LS+N+LS     W    LT L  +++  NH+       F  +  
Sbjct: 32  NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPN 89

Query: 709 LQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLN 768
           L+ LD+S N++  +L                           F +   L +L L  NH+ 
Sbjct: 90  LRYLDLSSNHLH-TLDE-----------------------FLFSDLQALEVLLLYNNHIV 125

Query: 769 GNIPDRV-DGLSQLSYLILAHNNLEGEVP----IQLCRLNQLQLLDLSNNNLHGHIPSCF 823
             +     + ++QL  L L+ N +    P        +L +L LLDLS+N L     +  
Sbjct: 126 -VVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDL 183

Query: 824 DNTT 827
               
Sbjct: 184 QKLP 187

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 70.6 bits (173), Expect = 6e-13
 Identities = 42/196 (21%), Positives = 69/196 (35%), Gaps = 25/196 (12%)

Query: 154 SLTSLDLSANRLKGSIDIKGPKRLSRLNNLKVFDLSGN-LFNNSILSSLARLSSLRSLLL 212
           +   L  S  +L  ++    P+ L       + DLS N L       +  RL++L SLLL
Sbjct: 19  ASNILSCSKQQLP-NV----PQSLPS--YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLL 71

Query: 213 YDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGIRDGSK 272
             N L   I  + F  + NL  LD+S N +   +     S L+ L  L L        + 
Sbjct: 72  SHNHLN-FISSEAFVPVPNLRYLDLSSNHLHTLD-EFLFSDLQALEVLLL------YNNH 123

Query: 273 LLQSM--GSF---PSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDARIALNTSFL 327
            +  +   +F     L  L LS N  +       +       L  L +   ++       
Sbjct: 124 -IVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKL---KKLP 179

Query: 328 QIIGESMPSIQYLSLS 343
               + +P+     L 
Sbjct: 180 LTDLQKLPAWVKNGLY 195

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 69.5 bits (170), Expect = 1e-12
 Identities = 43/157 (27%), Positives = 63/157 (40%), Gaps = 14/157 (8%)

Query: 539 LRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPS-SFGNMNFLQFLDLSNNQ 597
             LLD+S NN            L+ L    +S N L+  I S +F  +  L++LDLS+N 
Sbjct: 41  TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSNH 99

Query: 598 LTGEIPEHLAMGCVSLRSLALSNNNL---EGHMFSRNFNLTNLIWLQLEGNHFVGEIP-- 652
           L   + E L     +L  L L NN++   + + F    ++  L  L L  N      P  
Sbjct: 100 LH-TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFE---DMAQLQKLYLSQNQIS-RFPVE 154

Query: 653 --QSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRH 687
             +  +K   L  L LS+N L       L  L     
Sbjct: 155 LIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVK 191

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 63.7 bits (155), Expect = 1e-10
 Identities = 38/172 (22%), Positives = 64/172 (37%), Gaps = 30/172 (17%)

Query: 103 LESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILS----SLARLSSLTSL 158
              LDL  N+++         RL+ L +L        L +N +      +   + +L  L
Sbjct: 41  TALLDLSHNNLSRLRAEWTPTRLTNLHSL-------LLSHNHLNFISSEAFVPVPNLRYL 93

Query: 159 DLSANRLKGSIDIKGPKRLSRLNNLKVFDLSGNLFNNSILSSLAR-----LSSLRSLLLY 213
           DLS+N L  ++D       S L  L+V  L  N      +  + R     ++ L+ L L 
Sbjct: 94  DLSSNHLH-TLD---EFLFSDLQALEVLLLYNNH-----IVVVDRNAFEDMAQLQKLYLS 144

Query: 214 DNRLEGSIDVKEF---DSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHL 262
            N++     V+     + L  L  LD+S N++           L       L
Sbjct: 145 QNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLKKLP-LTDLQKLPAWVKNGL 194

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 63.3 bits (154), Expect = 1e-10
 Identities = 63/259 (24%), Positives = 90/259 (34%), Gaps = 53/259 (20%)

Query: 589 QFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNL----EGHMFSRNFNLTNLIWLQLEG 644
             L  S  QL   +P+ L         L LS+NNL         +    LTNL  L L  
Sbjct: 21  NILSCSKQQLP-NVPQSLP---SYTALLDLSHNNLSRLRAEWTPT---RLTNLHSLLLSH 73

Query: 645 NHFVGEIP-QSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLE- 702
           NH +  I  ++     +L+ L LS+N L         +L  L  +++  NHI   +    
Sbjct: 74  NH-LNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVV-VDRNA 131

Query: 703 FCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCL---TLMI 759
           F  +  LQ L +S N IS   P                            +      LM+
Sbjct: 132 FEDMAQLQKLYLSQNQIS-RFP-----------------------VELIKDGNKLPKLML 167

Query: 760 LDLSYNHLNGNIPDRVDGLSQLSYLILA-HNNLEGEVPIQ-LCRL----NQLQLLDLSNN 813
           LDLS N L       +  L       L  HNN     P++  C+L    +  Q   LS+ 
Sbjct: 168 LDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNN-----PLECDCKLYQLFSHWQYRQLSSV 222

Query: 814 NLHGHIPSCFDNTTLHERY 832
                   C  +  LH  +
Sbjct: 223 MDFQEDLYCMHSKKLHNIF 241

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 62.9 bits (153), Expect = 2e-10
 Identities = 40/189 (21%), Positives = 61/189 (32%), Gaps = 33/189 (17%)

Query: 489 DLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNN 548
               + LSH  ++     W     T L  L L              SH  L  +      
Sbjct: 40  YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLL--------------SHNHLNFIS--SEA 83

Query: 549 FQGHIPLEIGDILSRLTVFNISMNALDGSIPS-SFGNMNFLQFLDLSNNQLTGEIPEHLA 607
           F           +  L   ++S N L  ++    F ++  L+ L L NN +   +  +  
Sbjct: 84  FVP---------VPNLRYLDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIV-VVDRNAF 132

Query: 608 MGCVSLRSLALSNNNL---EGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSL--Q 662
                L+ L LS N +      +      L  L+ L L  N         L K  +    
Sbjct: 133 EDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKN 192

Query: 663 GLFLSNNSL 671
           GL+L NN L
Sbjct: 193 GLYLHNNPL 201

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 60.2 bits (146), Expect = 1e-09
 Identities = 29/145 (20%), Positives = 50/145 (34%), Gaps = 16/145 (11%)

Query: 97  FTPFQQLESLDLRDNDIAGCVENEGLER--LSRLSNLKMLNLVGNLFNNSILSSLARLSS 154
            T    L SL L  N +        +       + NL+ L+L  N  +       + L +
Sbjct: 60  PTRLTNLHSLLLSHNHL------NFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQA 113

Query: 155 LTSLDLSANRLKGSIDIKGPKRLSRLNNLKVFDLSGNL---FNNSILSSLARLSSLRSLL 211
           L  L L  N +   +D         +  L+   LS N    F   ++    +L  L  L 
Sbjct: 114 LEVLLLYNNHIV-VVD---RNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLD 169

Query: 212 LYDNRLEGSIDVKEFDSLSNLEELD 236
           L  N+L+  + + +   L    +  
Sbjct: 170 LSSNKLK-KLPLTDLQKLPAWVKNG 193

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 59.9 bits (145), Expect = 2e-09
 Identities = 38/140 (27%), Positives = 59/140 (42%), Gaps = 11/140 (7%)

Query: 588 LQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNL---EGHMFSRNFNLTNLIWLQLEG 644
              LDLS+N L+    E       +L SL LS+N+L       F     + NL +L L  
Sbjct: 41  TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFV---PVPNLRYLDLSS 97

Query: 645 NHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLE-- 702
           NH         S   +L+ L L NN +         ++  L+ + + +N I    P+E  
Sbjct: 98  NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISR-FPVELI 156

Query: 703 --FCQLRILQILDISDNNIS 720
               +L  L +LD+S N + 
Sbjct: 157 KDGNKLPKLMLLDLSSNKLK 176

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 56.8 bits (137), Expect = 2e-08
 Identities = 44/216 (20%), Positives = 78/216 (36%), Gaps = 51/216 (23%)

Query: 230 SNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGIRDGSKLLQSMGSF---PSLNTL 286
           S    LD+S+N +         + L  L  L L    +      + S  +F   P+L  L
Sbjct: 39  SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNF----ISS-EAFVPVPNLRYL 93

Query: 287 DLSYNNFTETVTTTTQGFPHFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSS 346
           DLS N+                             L+          + +++ L L N  
Sbjct: 94  DLSSNHLH--------------------------TLDEFLFS----DLQALEVLLLYN-- 121

Query: 347 VSNNSRTLDQG-LCPLVHLQELHMADNDLRGSLPW----CLANMTSLRILDVSSNQLIGS 401
             N+   +D+     +  LQ+L+++ N +    P         +  L +LD+SSN+ +  
Sbjct: 122 --NHIVVVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNK-LKK 177

Query: 402 ISSSPLIHLTSI--EDLILSDNHFQIPISLEPLFNH 435
           +  + L  L +     L L +N  +    L  LF+H
Sbjct: 178 LPLTDLQKLPAWVKNGLYLHNNPLECDCKLYQLFSH 213

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 56.8 bits (137), Expect = 2e-08
 Identities = 40/200 (20%), Positives = 70/200 (35%), Gaps = 51/200 (25%)

Query: 805 LQLLDLSNNNLHGHIPS--CFDN----TTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQ 858
             LLDLS+NNL   + +           +L   +N+ + +                    
Sbjct: 41  TALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLNFISS------------------ 81

Query: 859 ILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQI-GNLTKIQTLNLSHNNLA 917
             E+F                  L  LDLS N L   +   +  +L  ++ L L +N++ 
Sbjct: 82  --EAFVPVPN-------------LRYLDLSSNHL-HTLDEFLFSDLQALEVLLLYNNHIV 125

Query: 918 GPIPSTFSNLRNIESLDLSYNKLSWKIP----YQLVELNTLAVFSVAYNNLSGKIPERAA 973
               + F ++  ++ L LS N++S   P        +L  L +  ++ N L  K+P    
Sbjct: 126 VVDRNAFEDMAQLQKLYLSQNQISR-FPVELIKDGNKLPKLMLLDLSSNKLK-KLPLTDL 183

Query: 974 QFATFNESSY---EGNPFLC 990
           Q       +      NP  C
Sbjct: 184 QKLPAWVKNGLYLHNNPLEC 203

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 50.2 bits (120), Expect = 2e-06
 Identities = 28/100 (28%), Positives = 43/100 (43%), Gaps = 10/100 (10%)

Query: 878 VPSLLSGLDLSCNRLIGHIPPQI--GNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDL 935
           +PS  + LDLS N  +  +  +     LT + +L LSHN+L       F  + N+  LDL
Sbjct: 37  LPSYTALLDLSHNN-LSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDL 95

Query: 936 SYNKLS---WKIPYQLVELNTLAVFSVAYNNLSGKIPERA 972
           S N L      +   L  L  L    +  N++   +   A
Sbjct: 96  SSNHLHTLDEFLFSDLQALEVL---LLYNNHIV-VVDRNA 131

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 49.1 bits (117), Expect = 4e-06
 Identities = 29/118 (24%), Positives = 48/118 (40%), Gaps = 12/118 (10%)

Query: 335 PSIQYLSLSNSSVSNNSRTLDQG--LCPLVHLQELHMADNDLRGSLPWCLANMTSLRILD 392
                L LS+    NN   L        L +L  L ++ N L          + +LR LD
Sbjct: 39  SYTALLDLSH----NNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLD 94

Query: 393 VSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEP-LFNH-SRLKIFDAENNEI 448
           +SSN L  ++       L ++E L+L +NH      ++   F   ++L+      N+I
Sbjct: 95  LSSNHL-HTLDEFLFSDLQALEVLLLYNNHIV---VVDRNAFEDMAQLQKLYLSQNQI 148

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 70.9 bits (174), Expect = 3e-13
 Identities = 55/254 (21%), Positives = 79/254 (31%), Gaps = 59/254 (23%)

Query: 581 SFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWL 640
               +     ++     LT  +P  L         L LS N L     +     T L  L
Sbjct: 5   EVSKVASHLEVNCDKRNLT-ALPPDLP---KDTTILHLSENLLYTFSLATLMPYTRLTQL 60

Query: 641 QLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIP 700
            L+    + ++         L  L LS+N L                           +P
Sbjct: 61  NLDRAE-LTKLQ-VDGTLPVLGTLDLSHNQLQS-------------------------LP 93

Query: 701 LEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMIL 760
           L    L  L +LD+S N ++ SLP                        G       L  L
Sbjct: 94  LLGQTLPALTVLDVSFNRLT-SLP-----------------------LGALRGLGELQEL 129

Query: 761 DLSYNHLNGNIPDRV-DGLSQLSYLILAHNNLEGEVPIQLC-RLNQLQLLDLSNNNLHGH 818
            L  N L   +P  +     +L  L LA+NNL  E+P  L   L  L  L L  N+L+  
Sbjct: 130 YLKGNELK-TLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLYTI 187

Query: 819 IPSCFDNTTLHERY 832
               F +  L   +
Sbjct: 188 PKGFFGSHLLPFAF 201

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 70.1 bits (172), Expect = 5e-13
 Identities = 44/185 (23%), Positives = 70/185 (37%), Gaps = 14/185 (7%)

Query: 513 TKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMN 572
                L L  + L       +  + +L  L++ +        L++   L  L   ++S N
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK---LQVDGTLPVLGTLDLSHN 87

Query: 573 ALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNN---NLEGHMFS 629
            L  S+P     +  L  LD+S N+LT  +P     G   L+ L L  N    L   + +
Sbjct: 88  QLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLT 145

Query: 630 RNFNLTNLIWLQLEGNHFVGEIPQSL-SKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHI 688
                  L  L L  N+   E+P  L +   +L  L L  NSL   IP+      +L   
Sbjct: 146 P---TPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLYT-IPKGFFGSHLLPFA 200

Query: 689 IMPKN 693
            +  N
Sbjct: 201 FLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 68.2 bits (167), Expect = 2e-12
 Identities = 47/194 (24%), Positives = 73/194 (37%), Gaps = 25/194 (12%)

Query: 129 SNLKMLNLVGNLFNNSILSSLARLSSLTSLDLSANRLKGSIDIKGPKRLSRLNNLKVFDL 188
            +  +L+L  NL     L++L   + LT L+L    L   + +        L  L   DL
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQV-----DGTLPVLGTLDL 84

Query: 189 SGNLFNNSILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEVP 248
           S N    S+      L +L  L +  NRL  S+ +     L  L+EL +  NE+     P
Sbjct: 85  SHNQL-QSLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLP-P 141

Query: 249 QACSGLRKLSYLHLLRVGIRDGSKLLQSM--GSF---PSLNTLDLSYNNFTETVTTTTQG 303
              +   KL  L L        +  L  +  G      +L+TL L  N+      T  +G
Sbjct: 142 GLLTPTPKLEKLSL-------ANNNLTELPAGLLNGLENLDTLLLQENSL----YTIPKG 190

Query: 304 FPHFKSLKELYMDD 317
           F     L   ++  
Sbjct: 191 FFGSHLLPFAFLHG 204

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 64.7 bits (158), Expect = 3e-11
 Identities = 43/191 (22%), Positives = 67/191 (35%), Gaps = 42/191 (21%)

Query: 756 TLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNL 815
              IL LS N L       +   ++L+ L L    L  ++ +    L  L  LDLS+N L
Sbjct: 32  DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQV-DGTLPVLGTLDLSHNQL 89

Query: 816 HGHIPSCFDN----TTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSIT 871
              +P         T L   +N  +SL                       +     +   
Sbjct: 90  Q-SLPLLGQTLPALTVLDVSFNRLTSLPL--------------------GALRGLGE--- 125

Query: 872 YTYQGRVPSLLSGLDLSCNRLIGHIPPQI-GNLTKIQTLNLSHNNLAGPIPSTFSNLRNI 930
                     L  L L  N L   +PP +     K++ L+L++NNL        + L N+
Sbjct: 126 ----------LQELYLKGNEL-KTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENL 174

Query: 931 ESLDLSYNKLS 941
           ++L L  N L 
Sbjct: 175 DTLLLQENSLY 185

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 62.0 bits (151), Expect = 2e-10
 Identities = 44/237 (18%), Positives = 82/237 (34%), Gaps = 46/237 (19%)

Query: 152 LSSLTSLDLSANRLKGSIDIKGPKRLSRLNNLKVFDLSGNLFNNSILSSLARLSSLRSLL 211
           ++S   ++     L  ++    P  L +  +  +  LS NL     L++L   + L  L 
Sbjct: 9   VASHLEVNCDKRNLT-AL----PPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQLN 61

Query: 212 LYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGIRDGS 271
           L    L   + V    +L  L  LD+S+N++ +  +P     L  L+ L +         
Sbjct: 62  LDRAELT-KLQV--DGTLPVLGTLDLSHNQLQS--LPLLGQTLPALTVLDV-------SF 109

Query: 272 KLLQSM--GSF---PSLNTLDLSYNNFT---ETVTTTTQGFPHFKSLKELYMDDARIALN 323
             L S+  G+      L  L L  N        +            L++L + +  +   
Sbjct: 110 NRLTSLPLGALRGLGELQELYLKGNELKTLPPGL------LTPTPKLEKLSLANNNL--- 160

Query: 324 TSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPW 380
           T     +   + ++  L L      N+  T+ +G      L    +  N      PW
Sbjct: 161 TELPAGLLNGLENLDTLLLQE----NSLYTIPKGFFGSHLLPFAFLHGN------PW 207

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 60.5 bits (147), Expect = 7e-10
 Identities = 48/196 (24%), Positives = 73/196 (37%), Gaps = 25/196 (12%)

Query: 230 SNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLS 289
            +   L +S N +  F          +L+ L+L R  +      LQ  G+ P L TLDLS
Sbjct: 31  KDTTILHLSENLLYTFS-LATLMPYTRLTQLNLDRAELTK----LQVDGTLPVLGTLDLS 85

Query: 290 YNNFTETVTTTTQGFPHFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSN 349
           +N                 +L  L +   R+   TS        +  +Q L L      N
Sbjct: 86  HNQLQSLPLL----GQTLPALTVLDVSFNRL---TSLPLGALRGLGELQELYLKG----N 134

Query: 350 NSRTLDQGLC-PLVHLQELHMADNDLRGSLPW-CLANMTSLRILDVSSNQLIGSISSSP- 406
             +TL  GL  P   L++L +A+N+L   LP   L  + +L  L +  N L     + P 
Sbjct: 135 ELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSL----YTIPK 189

Query: 407 -LIHLTSIEDLILSDN 421
                  +    L  N
Sbjct: 190 GFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 57.8 bits (140), Expect = 4e-09
 Identities = 39/189 (20%), Positives = 65/189 (34%), Gaps = 18/189 (9%)

Query: 559 DILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLAL 618
           D+    T+ ++S N L     ++      L  L+L   +LT ++     +    L +L L
Sbjct: 28  DLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVDGTL--PVLGTLDL 84

Query: 619 SNNNLEGHMFSRNF-NLTNLIWLQLEGNHFVGEIPQSLS-----KCSSLQGLFLSNNSLS 672
           S+N L           L  L  L +  N        SL          LQ L+L  N L 
Sbjct: 85  SHNQL--QSLPLLGQTLPALTVLDVSFNRL-----TSLPLGALRGLGELQELYLKGNELK 137

Query: 673 GKIPRWLGNLTVLRHIIMPKNHIEGPIPLE-FCQLRILQILDISDNNISGSLPSCYDFVC 731
              P  L     L  + +  N++   +P      L  L  L + +N++       +    
Sbjct: 138 TLPPGLLTPTPKLEKLSLANNNLTE-LPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHL 196

Query: 732 IEQVHLSKN 740
           +    L  N
Sbjct: 197 LPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 52.8 bits (127), Expect = 2e-07
 Identities = 49/252 (19%), Positives = 81/252 (32%), Gaps = 61/252 (24%)

Query: 752 FNCLT-LMILDLSYNHLN---GNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQL 807
            + +   + ++    +L     ++P         + L L+ N L       L    +L  
Sbjct: 6   VSKVASHLEVNCDKRNLTALPPDLP------KDTTILHLSENLLYTFSLATLMPYTRLTQ 59

Query: 808 LDLSNNNLHGHIPSCFDN----TTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESF 863
           L+L    L   +           TL   +N   SL                         
Sbjct: 60  LNLDRAEL-TKLQV-DGTLPVLGTLDLSHNQLQSLPL---------------------LG 96

Query: 864 DFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQI-GNLTKIQTLNLSHNNLAGPIPS 922
                             L+ LD+S NR +  +P      L ++Q L L  N L    P 
Sbjct: 97  QTLPA-------------LTVLDVSFNR-LTSLPLGALRGLGELQELYLKGNELKTLPPG 142

Query: 923 TFSNLRNIESLDLSYNKLSWKIPY----QLVELNTLAVFSVAYNNLSGKIPERAAQFATF 978
             +    +E L L+ N L+ ++P      L  L+TL +     N+L   IP+        
Sbjct: 143 LLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQE---NSLYT-IPKGFFGSHLL 197

Query: 979 NESSYEGNPFLC 990
             +   GNP+LC
Sbjct: 198 PFAFLHGNPWLC 209

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 45.1 bits (107), Expect = 7e-05
 Identities = 31/133 (23%), Positives = 42/133 (31%), Gaps = 33/133 (24%)

Query: 95  SLFTPFQQLESLDLRDNDIAGCVENEGLER--LSRLSNLKMLNLVGNLFNNSILSSL--- 149
            L      L  LD+  N +        L    L  L  L+ L L GN      L +L   
Sbjct: 94  LLGQTLPALTVLDVSFNRL------TSLPLGALRGLGELQELYLKGNE-----LKTLPPG 142

Query: 150 --ARLSSLTSLDLSANRLKGSIDIKGPKRL-SRLNNLKVFDLSGNLFNNSILSSLAR--- 203
                  L  L L+ N L   +    P  L + L NL    L  N      L ++ +   
Sbjct: 143 LLTPTPKLEKLSLANNNLT-EL----PAGLLNGLENLDTLLLQENS-----LYTIPKGFF 192

Query: 204 -LSSLRSLLLYDN 215
               L    L+ N
Sbjct: 193 GSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 44.3 bits (105), Expect = 1e-04
 Identities = 53/236 (22%), Positives = 74/236 (31%), Gaps = 62/236 (26%)

Query: 362 VHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDN 421
                LH+++N L       L   T L  L++   +L           L  +  L LS N
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL---TKLQVDGTLPVLGTLDLSHN 87

Query: 422 HFQIPISLEPLFNH-SRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITF 480
             Q   SL  L      L + D   N                 +L S  L  G   G+  
Sbjct: 88  QLQ---SLPLLGQTLPALTVLDVSFN-----------------RLTS--LPLGALRGLGE 125

Query: 481 PKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLR 540
            + LY    L+   L  +      P  LL    KL +LSL N                  
Sbjct: 126 LQELY----LKGNELKTL------PPGLLTPTPKLEKLSLAN------------------ 157

Query: 541 LLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNN 596
                 NN    +P  + + L  L    +  N+L  +IP  F   + L F  L  N
Sbjct: 158 ------NNLT-ELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGN 205

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 71.9 bits (176), Expect = 6e-13
 Identities = 77/540 (14%), Positives = 158/540 (29%), Gaps = 77/540 (14%)

Query: 151 RLSSLTSLDLSANRLKGSIDIKGPKRLSRLNNLKVFDLSGNLFNNSILSSLARLSSLRSL 210
            +       +    +     +     + R   ++  +L G              +    +
Sbjct: 39  EIERWCRRKVF---IGNCYAVSPATVIRRFPKVRSVELKGKP----------HFADFNLV 85

Query: 211 LLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGIRDG 270
                            S + LEE+ +    + +  +       +    L L        
Sbjct: 86  PDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFST 145

Query: 271 SKLLQSMGSFPSLNTLDLSYNNFTE-TVTTTTQGFPHFKSLKELYMDDARIALNTSFLQI 329
             L     +  +L  LDL  ++  + +    +     + SL  L +      ++ S L+ 
Sbjct: 146 DGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALER 205

Query: 330 IGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHL---QELHMADNDLRGSLPWCLANMT 386
           +    P+++ L L+ +       TL Q    L  L           D+   L   L+   
Sbjct: 206 LVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCK 265

Query: 387 SLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAENN 446
            LR L    +        + L  + S                       SRL   +    
Sbjct: 266 ELRCLSGFWD-----AVPAYLPAVYS---------------------VCSRLTTLNLSYA 299

Query: 447 EINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPN 506
            + +  +       P   LQ L +     D            DL  +R+   +       
Sbjct: 300 TVQSYDLVKLLCQCPK--LQRLWVLDYIED-AGLEVLASTCKDLRELRVFPSEPFV---- 352

Query: 507 WLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTV 566
             +E N  L +  LV  S+            +L  +            + I      +T 
Sbjct: 353 --MEPNVALTEQGLV--SVS-------MGCPKLESVLYFCRQMTNAALITIARNRPNMTR 401

Query: 567 FNIS-----------MNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRS 615
           F +            +  LD    +   +   L+ L LS   LT ++ E++      +  
Sbjct: 402 FRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGL-LTDKVFEYIGTYAKKMEM 460

Query: 616 LALSNNNL--EGHMFSRNFNLTNLIWLQLEGNHFVGE-IPQSLSKCSSLQGLFLSNNSLS 672
           L+++       G M        +L  L++    F  + +  + SK  +++ L++S+ S+S
Sbjct: 461 LSVAFAGDSDLG-MHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVS 519

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 71.5 bits (175), Expect = 7e-13
 Identities = 76/555 (13%), Positives = 164/555 (29%), Gaps = 85/555 (15%)

Query: 92  LNASLFTPFQQLESLDLR-----------DNDIAGCVENEGLERLSRLSNLKMLNLVGNL 140
             A++   F ++ S++L+            +   G V        S  + L+ + L   +
Sbjct: 57  SPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMV 116

Query: 141 FNNSILSSLAR-LSSLTSLDLSANRLKGSIDIKGPKRLSR-LNNLKVFDLSGNLFNNSIL 198
             +  L  +A+   +   L LS+          G   ++    NLK  DL  +  ++   
Sbjct: 117 VTDDCLELIAKSFKNFKVLVLSSCE---GFSTDGLAAIAATCRNLKELDLRESDVDDVSG 173

Query: 199 SSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMS--YNEIDNFEVPQACSGLRK 256
             L+                        D+ ++L  L++S   +E+    + +  +    
Sbjct: 174 HWLSHFP---------------------DTYTSLVSLNISCLASEVSFSALERLVTRCPN 212

Query: 257 LSYLHLLR-VGIRDGSKLLQSMGSFPSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYM 315
           L  L L R V +   + LLQ     P L  L              +         KEL  
Sbjct: 213 LKSLKLNRAVPLEKLATLLQRA---PQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRC 269

Query: 316 DDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLR 375
                    ++L  +      +  L+LS ++V +    L + LC    LQ L + D    
Sbjct: 270 LSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYD--LVKLLCQCPKLQRLWVLDYIED 327

Query: 376 GSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNH 435
             L    +    LR L V  ++    +  +  +    +  + +                 
Sbjct: 328 AGLEVLASTCKDLRELRVFPSEPF-VMEPNVALTEQGLVSVSM---------------GC 371

Query: 436 SRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRL 495
            +L+       ++    + +  +      +    L         +               
Sbjct: 372 PKLESVLYFCRQMTNAALIT--IARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGA--- 426

Query: 496 SHIKMNEEFPNWLLENNTKLRQLSL---VNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGH 552
                       ++E+   LR+LSL   + D +           K++ +L V+       
Sbjct: 427 ------------IVEHCKDLRRLSLSGLLTDKVFEYI---GTYAKKMEMLSVAFAGDSDL 471

Query: 553 IPLEIGDILSRLTVFNIS-MNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCV 611
               +      L    I      D ++ ++   +  ++ L +S+  ++    + L     
Sbjct: 472 GMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMP 531

Query: 612 SLRSLALSNNNLEGH 626
            L    +        
Sbjct: 532 KLNVEVIDERGAPDS 546

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 71.7 bits (175), Expect = 7e-13
 Identities = 41/145 (28%), Positives = 65/145 (44%), Gaps = 9/145 (6%)

Query: 100 FQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSI--LSSLARLSSLTS 157
           F  L+++D         + ++ L   S L        V +L +  +  L  L +L  +T 
Sbjct: 408 FSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTH 467

Query: 158 LDLSANRLKGSIDIKGPKRLSRLNNLKVFDLSGNLFNNSILSSLARLSSLRSLLLYDNRL 217
           LDLS NRL+       P  L+ L  L+V   S N   N  +  +A L  L+ LLL +NRL
Sbjct: 468 LDLSHNRLR-----ALPPALAALRCLEVLQASDNALEN--VDGVANLPRLQELLLCNNRL 520

Query: 218 EGSIDVKEFDSLSNLEELDMSYNEI 242
           + S  ++   S   L  L++  N +
Sbjct: 521 QQSAAIQPLVSCPRLVLLNLQGNSL 545

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 69.8 bits (170), Expect = 2e-12
 Identities = 34/150 (22%), Positives = 53/150 (35%), Gaps = 15/150 (10%)

Query: 118 ENEGLERLSRLSNLKMLNLVGNLFNNSILSSLARLS-----SLTSLDLSANRLKGSIDIK 172
           E E L+  S L  +  +         S       +       +  L L+   L     + 
Sbjct: 401 EKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLT---VLC 457

Query: 173 GPKRLSRLNNLKVFDLSGNLFNNSILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNL 232
               L +L  +   DLS N    ++  +LA L  L  L   DN LE   +V    +L  L
Sbjct: 458 H---LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE---NVDGVANLPRL 510

Query: 233 EELDMSYNEIDNFEVPQACSGLRKLSYLHL 262
           +EL +  N +      Q      +L  L+L
Sbjct: 511 QELLLCNNRLQQSAAIQPLVSCPRLVLLNL 540

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 68.6 bits (167), Expect = 6e-12
 Identities = 46/273 (16%), Positives = 101/273 (36%), Gaps = 34/273 (12%)

Query: 181 NNLKVFDLSGNLFNNSILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYN 240
            +L    L+  L  ++         S +  +L  +R E     ++  +   L   ++S  
Sbjct: 302 CDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWC--RDSATDEQLFRCELSVE 359

Query: 241 EIDNFEVPQACSGLRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTETVTTT 300
           +    +           S   L  +   +   LL  +    +L+ L              
Sbjct: 360 KSTVLQSEL-------ESCKELQELEPENKWCLLTIILLMRALDPLLYE----------- 401

Query: 301 TQGFPHFKSLKEL-----YMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLD 355
            +   +F +LK +        D   +       ++      ++ L L++  ++       
Sbjct: 402 KETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLC---- 457

Query: 356 QGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIED 415
             L  L+ +  L ++ N LR +LP  LA +  L +L  S N L    +   + +L  +++
Sbjct: 458 -HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE---NVDGVANLPRLQE 512

Query: 416 LILSDNHFQIPISLEPLFNHSRLKIFDAENNEI 448
           L+L +N  Q   +++PL +  RL + + + N +
Sbjct: 513 LLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSL 545

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 62.5 bits (151), Expect = 5e-10
 Identities = 39/261 (14%), Positives = 80/261 (30%), Gaps = 15/261 (5%)

Query: 712 LDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNI 771
               ++ +              Q          +           L   +LS       +
Sbjct: 306 AASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFRCELSVEKST-VL 364

Query: 772 PDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHER 831
              ++   +L  L   +      + + +  L+ L     +              +TL   
Sbjct: 365 QSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYF----------STLKAV 414

Query: 832 YNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNR 891
               ++      S  ++    +  +   +       K +T         L++ LDLS NR
Sbjct: 415 DPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNR 474

Query: 892 LIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLS-WKIPYQLVE 950
           L   +PP +  L  ++ L  S N L   +    +NL  ++ L L  N+L        LV 
Sbjct: 475 LR-ALPPALAALRCLEVLQASDNALEN-VDG-VANLPRLQELLLCNNRLQQSAAIQPLVS 531

Query: 951 LNTLAVFSVAYNNLSGKIPER 971
              L + ++  N+L  +   +
Sbjct: 532 CPRLVLLNLQGNSLCQEEGIQ 552

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 57.5 bits (138), Expect = 2e-08
 Identities = 46/299 (15%), Positives = 96/299 (32%), Gaps = 20/299 (6%)

Query: 348 SNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPL 407
                +    L  +V    L +      G        +  L    ++      +      
Sbjct: 264 PLTVGSRMGTLLLMVDEAPLSVEWRTPDGRNRPSHVWLCDLPAASLNDQLPQHTFRVIWT 323

Query: 408 IHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQS 467
              +  E ++L D                R ++   ++  + +E+     L     + + 
Sbjct: 324 GSDSQKECVLLKDRPECWCRDSATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKW 383

Query: 468 LLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVG 527
            LL+      I   + L +    E   L +    +            LR   L+      
Sbjct: 384 CLLTI-----ILLMRAL-DPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLE----- 432

Query: 528 PFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNF 587
              +    +  +R+L ++  +      L   + L  +T  ++S N L  ++P +   +  
Sbjct: 433 -NSVLKMEYADVRVLHLAHKDLTV---LCHLEQLLLVTHLDLSHNRLR-ALPPALAALRC 487

Query: 588 LQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNF-NLTNLIWLQLEGN 645
           L+ L  S+N L   +   +A     L+ L L NN L+     +   +   L+ L L+GN
Sbjct: 488 LEVLQASDNALE-NVDG-VA-NLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGN 543

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 67.0 bits (164), Expect = 3e-12
 Identities = 43/213 (20%), Positives = 81/213 (38%), Gaps = 20/213 (9%)

Query: 588 LQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNN----LEGHMFSRNFNLTNLIWLQLE 643
            Q L L    L   IP H      ++  + +S +     LE H F    NL+ +  +++ 
Sbjct: 33  TQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFY---NLSKVTHIEIR 88

Query: 644 GNHFVGEIPQS-LSKCSSLQGLFLSNNSLSGKIP--RWLGNLTVLRHIIMPKNHIEGPIP 700
               +  I    L +   L+ L + N  L    P    + +  +   + +  N     IP
Sbjct: 89  NTRNLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIP 147

Query: 701 LE-FCQLR-ILQILDISDNNISGSLPSC-YDFVCIEQVHLSKNMLHGQLKEGTFFNCLT- 756
           +  F  L      L + +N  + S+    ++   ++ V+L+KN     + +  F    + 
Sbjct: 148 VNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSG 206

Query: 757 LMILDLSYNHLNGNIPDRVDGLSQLSYLILAHN 789
             +LD+S   +   +P    GL  L  LI  + 
Sbjct: 207 PSLLDVSQTSVT-ALPS--KGLEHLKELIARNT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 64.6 bits (158), Expect = 1e-11
 Identities = 35/290 (12%), Positives = 79/290 (27%), Gaps = 87/290 (30%)

Query: 658 CSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDN 717
           C   +   ++   +  +IP    +   L+   + + H+       F  L  +  + +S +
Sbjct: 10  CHQEEDFRVTCKDIQ-RIPSLPPSTQTLK---LIETHLRTIPSHAFSNLPNISRIYVSID 65

Query: 718 NISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRV-D 776
                L S                        +F+N   +  +++        I      
Sbjct: 66  VTLQQLES-----------------------HSFYNLSKVTHIEIRNTRNLTYIDPDALK 102

Query: 777 GLSQLSYLILAHNNLEGEVP--IQLCRLNQLQLLDLSNNNLHGHI-PSCFDNTTLHERYN 833
            L  L +L + +  L+   P   ++   +   +L++++N     I  + F          
Sbjct: 103 ELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQG-------- 153

Query: 834 NGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLI 893
                                                       + +    L L  N   
Sbjct: 154 --------------------------------------------LCNETLTLKLYNNG-F 168

Query: 894 GHIPPQIGNLTKIQTLNLSHNNLAGPIPS-TFSNLRN-IESLDLSYNKLS 941
             +     N TK+  + L+ N     I    F  + +    LD+S   ++
Sbjct: 169 TSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT 218

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 63.9 bits (156), Expect = 3e-11
 Identities = 36/193 (18%), Positives = 81/193 (41%), Gaps = 9/193 (4%)

Query: 539 LRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPS-SFGNMNFLQFLDLSNNQ 597
            + L + + + +  IP      L  ++   +S++     + S SF N++ +  +++ N +
Sbjct: 33  TQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTR 91

Query: 598 LTGEIPEHLAMGCVSLRSLALSNNNLEG-HMFSRNFNLTNLIWLQLEGNHFVGEIPQSL- 655
               I          L+ L + N  L+     ++ ++      L++  N ++  IP +  
Sbjct: 92  NLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAF 151

Query: 656 -SKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKN-HIEGPIPLEFCQLR-ILQIL 712
              C+    L L NN  +  +  +  N T L  + + KN ++       F  +     +L
Sbjct: 152 QGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLL 210

Query: 713 DISDNNISGSLPS 725
           D+S  +++ +LPS
Sbjct: 211 DVSQTSVT-ALPS 222

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 62.3 bits (152), Expect = 9e-11
 Identities = 35/242 (14%), Positives = 77/242 (31%), Gaps = 53/242 (21%)

Query: 60  DCCQWERVSCNNTMGRVV--------VLDLSQTHRGEYWYLNASLFTPFQQLESLDLRDN 111
           +C Q E         + +         L L +TH      + +  F+    +  + +  +
Sbjct: 9   ECHQEEDFRVTCKDIQRIPSLPPSTQTLKLIETHLRT---IPSHAFSNLPNISRIYVSID 65

Query: 112 DIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILSSLAR-----LSSLTSLDLSANRLK 166
                +E+     LS+++++        + N   L+ +       L  L  L +    LK
Sbjct: 66  VTLQQLESHSFYNLSKVTHI-------EIRNTRNLTYIDPDALKELPLLKFLGIFNTGLK 118

Query: 167 GSIDIKGPKRLSRLNNLKVFDLSGN----------------------LFNNSI--LSSLA 202
                    ++   +   + +++ N                      L+NN    +   A
Sbjct: 119 ---MFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYA 175

Query: 203 -RLSSLRSLLLYDNRLEGSIDVKEFDSL-SNLEELDMSYNEIDNFEVPQACSGLRKLSYL 260
              + L ++ L  N+    ID   F  + S    LD+S   +      +    L++L   
Sbjct: 176 FNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALP-SKGLEHLKELIAR 234

Query: 261 HL 262
           + 
Sbjct: 235 NT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 60.0 bits (146), Expect = 6e-10
 Identities = 30/151 (19%), Positives = 50/151 (33%), Gaps = 17/151 (11%)

Query: 152 LSSLTSLDLSANRLKGSIDIKGPKRLSRLNNLKVFDLSGNLFNNSILS-SLARLSSLRSL 210
             S  +L L    L+ +I        S L N+    +S ++    + S S   LS +  +
Sbjct: 30  PPSTQTLKLIETHLR-TIP---SHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHI 85

Query: 211 LLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGIRDG 270
            + + R    ID      L  L+ L +    +  F              L +        
Sbjct: 86  EIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEIT------D 139

Query: 271 SKLLQSM--GSFPSLN----TLDLSYNNFTE 295
           +  + S+   +F  L     TL L  N FT 
Sbjct: 140 NPYMTSIPVNAFQGLCNETLTLKLYNNGFTS 170

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 50.0 bits (120), Expect = 1e-06
 Identities = 14/95 (14%), Positives = 33/95 (34%), Gaps = 5/95 (5%)

Query: 882 LSGLDLSCNRLIGHIPPQI-GNLTKIQTLNLSHNNLAGPIPS-TFSNLRNIESLDLSYNK 939
           +S + +S +  +  +      NL+K+  + + +      I       L  ++ L +    
Sbjct: 57  ISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTG 116

Query: 940 LSWKIP--YQLVELNTLAVFSVAYNNLSGKIPERA 972
           L    P   ++   +   +  +  N     IP  A
Sbjct: 117 LK-MFPDLTKVYSTDIFFILEITDNPYMTSIPVNA 150

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 43.8 bits (104), Expect = 1e-04
 Identities = 20/141 (14%), Positives = 55/141 (39%), Gaps = 9/141 (6%)

Query: 335 PSIQYLSLSNSSVSNNSRTLDQG-LCPLVHLQELHMADNDLRGSLPW-CLANMTSLRILD 392
           PS Q L L       + RT+       L ++  ++++ +     L      N++ +  ++
Sbjct: 31  PSTQTLKLIE----THLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIE 86

Query: 393 VSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFD-AENNEINAE 451
           + + + +  I    L  L  ++ L + +   ++   L  +++     I +  +N  +   
Sbjct: 87  IRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYM--T 144

Query: 452 IIESHSLTTPNFQLQSLLLSS 472
            I  ++      +  +L L +
Sbjct: 145 SIPVNAFQGLCNETLTLKLYN 165

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 64.3 bits (157), Expect = 9e-12
 Identities = 33/147 (22%), Positives = 63/147 (42%), Gaps = 14/147 (9%)

Query: 117 VENEGLERLSRLSNLKMLNLVGNLFNNSILSSLARLSSLTSLDLSANRLKGSIDIKGPKR 176
            E       +    +++  ++  +    + ++L+ L +   L LS N ++    I     
Sbjct: 14  FEERKSVVATEAEKVELHGMIPPIEK--MDATLSTLKACKHLALSTNNIE---KISS--- 65

Query: 177 LSRLNNLKVFDLSGNLFNNSILSSLARLS-SLRSLLLYDNRLEGSIDVKEFDSLSNLEEL 235
           LS + NL++  L  NL     + +L  ++ +L  L +  N++     +   + L NL  L
Sbjct: 66  LSGMENLRILSLGRNLI--KKIENLDAVADTLEELWISYNQIA---SLSGIEKLVNLRVL 120

Query: 236 DMSYNEIDNFEVPQACSGLRKLSYLHL 262
            MS N+I N+      + L KL  L L
Sbjct: 121 YMSNNKITNWGEIDKLAALDKLEDLLL 147

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 63.2 bits (154), Expect = 2e-11
 Identities = 41/148 (27%), Positives = 65/148 (43%), Gaps = 25/148 (16%)

Query: 100 FQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILSSLARLS-SLTSL 158
            +  + L L  N+I      E +  LS + NL++L+L  NL     + +L  ++ +L  L
Sbjct: 47  LKACKHLALSTNNI------EKISSLSGMENLRILSLGRNLI--KKIENLDAVADTLEEL 98

Query: 159 DLSANRLKGSIDIKGPKRLSRLNNLKVFDLSGNLFNN-SILSSLARLSSLRSLLLYDNRL 217
            +S N++     + G   + +L NL+V  +S N   N   +  LA L  L  LLL  N L
Sbjct: 99  WISYNQIA---SLSG---IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPL 152

Query: 218 EGSIDVKEFDS---------LSNLEELD 236
                     S         L NL++LD
Sbjct: 153 YNDYKENNATSEYRIEVVKRLPNLKKLD 180

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 62.8 bits (153), Expect = 3e-11
 Identities = 33/138 (23%), Positives = 59/138 (42%), Gaps = 14/138 (10%)

Query: 105 SLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILSSLARLSSLTSLDLSANR 164
            L      I           LS L   K L L  N      +SSL+ + +L  L L  N 
Sbjct: 29  ELHGMIPPIEKMDAT-----LSTLKACKHLALSTNNI--EKISSLSGMENLRILSLGRNL 81

Query: 165 LKGSIDIKGPKRLSRLNNLKVFDLSGNLFNNSILSSLARLSSLRSLLLYDNRLEGSIDVK 224
           +K    I+    +   + L+   +S N   +  LS + +L +LR L + +N++    ++ 
Sbjct: 82  IK---KIENLDAV--ADTLEELWISYNQIAS--LSGIEKLVNLRVLYMSNNKITNWGEID 134

Query: 225 EFDSLSNLEELDMSYNEI 242
           +  +L  LE+L ++ N +
Sbjct: 135 KLAALDKLEDLLLAGNPL 152

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 46.6 bits (111), Expect = 1e-05
 Identities = 30/140 (21%), Positives = 57/140 (40%), Gaps = 21/140 (15%)

Query: 306 HFKSLKELYMDDARIALNTSFLQIIG-ESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHL 364
             K+ K L +    I       +I     M +++ LSL      N  + ++        L
Sbjct: 46  TLKACKHLALSTNNIE------KISSLSGMENLRILSLGR----NLIKKIENLDAVADTL 95

Query: 365 QELHMADN---DLRGSLPWCLANMTSLRILDVSSNQLIGSISS-SPLIHLTSIEDLILSD 420
           +EL ++ N    L G     +  + +LR+L +S+N+ I +      L  L  +EDL+L+ 
Sbjct: 96  EELWISYNQIASLSG-----IEKLVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAG 149

Query: 421 NHFQIPISLEPLFNHSRLKI 440
           N            +  R+++
Sbjct: 150 NPLYNDYKENNATSEYRIEV 169

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 26/128 (20%), Positives = 58/128 (45%), Gaps = 9/128 (7%)

Query: 332 ESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRIL 391
            ++ + ++L+LS     NN   +   L  + +L+ L +  N ++  +    A   +L  L
Sbjct: 45  STLKACKHLALST----NNIEKIS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEEL 98

Query: 392 DVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAE 451
            +S NQ I S+S   +  L ++  L +S+N       ++ L    +L+      N +  +
Sbjct: 99  WISYNQ-IASLS--GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYND 155

Query: 452 IIESHSLT 459
             E+++ +
Sbjct: 156 YKENNATS 163

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 43.5 bits (103), Expect = 1e-04
 Identities = 37/171 (21%), Positives = 65/171 (38%), Gaps = 40/171 (23%)

Query: 650 EIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRIL 709
           ++  +LS   + + L LS N++  KI   L  +  LR + + +N I+    L+      L
Sbjct: 39  KMDATLSTLKACKHLALSTNNIE-KI-SSLSGMENLRILSLGRNLIKKIENLDAV-ADTL 95

Query: 710 QILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNG 769
           + L IS N I+           +  +                   + L +L +S N +  
Sbjct: 96  EELWISYNQIA----------SLSGIE----------------KLVNLRVLYMSNNKITN 129

Query: 770 -NIPDRVDGLSQLSYLILAHNNLEGEVPIQ----------LCRLNQLQLLD 809
               D++  L +L  L+LA N L  +              + RL  L+ LD
Sbjct: 130 WGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 42.0 bits (99), Expect = 4e-04
 Identities = 27/99 (27%), Positives = 36/99 (36%), Gaps = 13/99 (13%)

Query: 96  LFTPFQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNN-SILSSLARLSS 154
           L      LE L +  N I        L  + +L NL++L +  N   N   +  LA L  
Sbjct: 88  LDAVADTLEELWISYNQI------ASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDK 141

Query: 155 LTSLDLSANRLKGSIDIKGPKR------LSRLNNLKVFD 187
           L  L L+ N L                 + RL NLK  D
Sbjct: 142 LEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 41.2 bits (97), Expect = 7e-04
 Identities = 28/119 (23%), Positives = 48/119 (40%), Gaps = 18/119 (15%)

Query: 533 IHSHKQLRLLDVSKNNFQGHIPLEIGDI-----LSRLTVFNISMNALDGSIPSSFGNMNF 587
           + + K  + L +S NN        I  I     +  L + ++  N +   I +     + 
Sbjct: 44  LSTLKACKHLALSTNN--------IEKISSLSGMENLRILSLGRNLIK-KIENLDAVADT 94

Query: 588 LQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEG-HMFSRNFNLTNLIWLQLEGN 645
           L+ L +S NQ+   +   +    V+LR L +SNN +       +   L  L  L L GN
Sbjct: 95  LEELWISYNQIA-SL-SGIE-KLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGN 150

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 40.8 bits (96), Expect = 7e-04
 Identities = 19/81 (23%), Positives = 39/81 (48%), Gaps = 5/81 (6%)

Query: 885 LDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKI 944
           L LS N  I  I   +  +  ++ L+L  N +   I +  +    +E L +SYN+++  +
Sbjct: 53  LALSTNN-IEKISS-LSGMENLRILSLGRNLIKK-IENLDAVADTLEELWISYNQIA-SL 108

Query: 945 PYQLVELNTLAVFSVAYNNLS 965
              + +L  L V  ++ N ++
Sbjct: 109 S-GIEKLVNLRVLYMSNNKIT 128

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 62.5 bits (152), Expect = 2e-11
 Identities = 43/154 (27%), Positives = 69/154 (44%), Gaps = 14/154 (9%)

Query: 100 FQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILSSLARLSSLTSLD 159
              +  L L   D     + +     +   NL+ L+L+        +S+L +L  L  L+
Sbjct: 23  PAAVRELVL---DNCKSNDGKIEGLTAEFVNLEFLSLINVGL--ISVSNLPKLPKLKKLE 77

Query: 160 LSANRLKGSIDIKGPKRLSRLNNLKVFDLSGNLFNN-SILSSLARLSSLRSLLLYDNRLE 218
           LS NR+ G +D+   K    L NL   +LSGN   + S L  L +L  L+SL L++  + 
Sbjct: 78  LSENRIFGGLDMLAEK----LPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVT 133

Query: 219 GSIDVKE--FDSLSNLEELDMSYNEIDNFEVPQA 250
              D +E  F  L  L  LD    + ++ E P +
Sbjct: 134 NLNDYRESVFKLLPQLTYLD--GYDREDQEAPDS 165

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 57.1 bits (138), Expect = 2e-09
 Identities = 25/113 (22%), Positives = 44/113 (38%), Gaps = 6/113 (5%)

Query: 151 RLSSLTSLDLSANRLKGSIDIKGPKRLSRLNNLKVFDLSGNLFNNSILSSLARLSSLRSL 210
             +++  L L   +     D K     +   NL+   L         +S+L +L  L+ L
Sbjct: 22  TPAAVRELVLDNCKSN---DGKIEGLTAEFVNLEFLSLINVGL--ISVSNLPKLPKLKKL 76

Query: 211 LLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLL 263
            L +NR+         + L NL  L++S N++ +    +    L  L  L L 
Sbjct: 77  ELSENRIF-GGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLF 128

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 55.5 bits (134), Expect = 5e-09
 Identities = 28/121 (23%), Positives = 46/121 (38%), Gaps = 7/121 (5%)

Query: 127 RLSNLKMLNLVGNLFNN-SILSSLARLSSLTSLDLSANRLKGSIDIKGPKRLSRLNNLKV 185
             + ++ L L     N+  I    A   +L  L L    L     +     L +L  LK 
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI---SVSN---LPKLPKLKK 75

Query: 186 FDLSGNLFNNSILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNF 245
            +LS N     +     +L +L  L L  N+L+    ++    L  L+ LD+   E+ N 
Sbjct: 76  LELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNL 135

Query: 246 E 246
            
Sbjct: 136 N 136

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 54.4 bits (131), Expect = 2e-08
 Identities = 39/136 (28%), Positives = 55/136 (40%), Gaps = 16/136 (11%)

Query: 78  VLDLSQTHRGEYWYLNASLFTPFQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLV 137
           VLD  +++ G+       L   F  LE L L +  +        +  L +L  LK L L 
Sbjct: 30  VLDNCKSNDGKI----EGLTAEFVNLEFLSLINVGL------ISVSNLPKLPKLKKLELS 79

Query: 138 GNLFNNSILSSLARLSSLTSLDLSANRLKGSIDIKGPKRLSRLNNLKVFDLSGN---LFN 194
            N     +     +L +LT L+LS N+LK   DI   + L +L  LK  DL        N
Sbjct: 80  ENRIFGGLDMLAEKLPNLTHLNLSGNKLK---DISTLEPLKKLECLKSLDLFNCEVTNLN 136

Query: 195 NSILSSLARLSSLRSL 210
           +   S    L  L  L
Sbjct: 137 DYRESVFKLLPQLTYL 152

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 49.7 bits (119), Expect = 6e-07
 Identities = 26/116 (22%), Positives = 57/116 (49%), Gaps = 9/116 (7%)

Query: 307 FKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQE 366
             +++EL +D+ +   N   ++ +     ++++LSL N        ++   L  L  L++
Sbjct: 23  PAAVRELVLDNCKS--NDGKIEGLTAEFVNLEFLSLIN----VGLISVS-NLPKLPKLKK 75

Query: 367 LHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISS-SPLIHLTSIEDLILSDN 421
           L +++N + G L      + +L  L++S N+ +  IS+  PL  L  ++ L L + 
Sbjct: 76  LELSENRIFGGLDMLAEKLPNLTHLNLSGNK-LKDISTLEPLKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 49.4 bits (118), Expect = 7e-07
 Identities = 30/122 (24%), Positives = 54/122 (44%), Gaps = 5/122 (4%)

Query: 327 LQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMT 386
           L++   +  +++ L L N    +N   ++      V+L+ L + +  L  S+   L  + 
Sbjct: 16  LELRNRTPAAVRELVLDNCK--SNDGKIEGLTAEFVNLEFLSLINVGLI-SVS-NLPKLP 71

Query: 387 SLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAENN 446
            L+ L++S N+ I          L ++  L LS N  +   +LEPL     LK  D  N 
Sbjct: 72  KLKKLELSENR-IFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC 130

Query: 447 EI 448
           E+
Sbjct: 131 EV 132

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 42.4 bits (100), Expect = 1e-04
 Identities = 28/107 (26%), Positives = 38/107 (35%), Gaps = 5/107 (4%)

Query: 591 LDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNF-NLTNLIWLQLEGNHFVG 649
           L L N +      E L    V+L  L+L N  L       N   L  L  L+L  N   G
Sbjct: 29  LVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLIS---VSNLPKLPKLKKLELSENRIFG 85

Query: 650 EIPQSLSKCSSLQGLFLSNNSLSG-KIPRWLGNLTVLRHIIMPKNHI 695
            +     K  +L  L LS N L        L  L  L+ + +    +
Sbjct: 86  GLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEV 132

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 29/114 (25%), Positives = 47/114 (41%), Gaps = 5/114 (4%)

Query: 701 LEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMIL 760
                +R L +LD   +N         +FV +E + L    L              L  L
Sbjct: 21  RTPAAVREL-VLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI---SVSNLPKLPKLKKL 76

Query: 761 DLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQ-LCRLNQLQLLDLSNN 813
           +LS N + G +    + L  L++L L+ N L+    ++ L +L  L+ LDL N 
Sbjct: 77  ELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 40.9 bits (96), Expect = 6e-04
 Identities = 29/170 (17%), Positives = 54/170 (31%), Gaps = 43/170 (25%)

Query: 228 SLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLD 287
           + + + EL                        L   +       K+      F +L  L 
Sbjct: 22  TPAAVRELV-----------------------LDNCKSND---GKIEGLTAEFVNLEFLS 55

Query: 288 LSYNNFTETVTTTTQGFPHFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSV 347
           L           +    P    LK+L + + RI      L ++ E +P++ +L+LS    
Sbjct: 56  LINVGL-----ISVSNLPKLPKLKKLELSENRI---FGGLDMLAEKLPNLTHLNLSG--- 104

Query: 348 SNNSRTLD--QGLCPLVHLQELHMADN---DLRGSLPWCLANMTSLRILD 392
            N  + +   + L  L  L+ L + +    +L          +  L  LD
Sbjct: 105 -NKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLD 153

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 40.5 bits (95), Expect = 8e-04
 Identities = 24/114 (21%), Positives = 39/114 (34%), Gaps = 8/114 (7%)

Query: 511 NNTKLRQLSLVNDSLVGPFRLPIHSH-KQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNI 569
               +R+L L N          + +    L  L +          +     L +L    +
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLIS---VSNLPKLPKLKKLEL 78

Query: 570 SMNALDGSIPSSFGNMNFLQFLDLSNNQLT--GEIPEHLAMGCVSLRSLALSNN 621
           S N + G +      +  L  L+LS N+L     + E L      L+SL L N 
Sbjct: 79  SENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTL-EPLK-KLECLKSLDLFNC 130

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 66.9 bits (163), Expect = 2e-11
 Identities = 68/502 (13%), Positives = 163/502 (32%), Gaps = 53/502 (10%)

Query: 175 KRLSRLNNLKVFDLS-GNLFNNSILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLE 233
           +R  ++++     ++    +  +      R  +LRSL            +K     +   
Sbjct: 42  RRWFKIDSETREHVTMALCYTATPDRLSRRFPNLRSL-----------KLKGKPRAAMFN 90

Query: 234 ELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSY-NN 292
            +  ++       V +  + LR+L  +H  R+ + D      +      L TL L   + 
Sbjct: 91  LIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSG 150

Query: 293 FTETVTTTTQGFPHFKSLKELYMDD-ARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNS 351
           FT           H + +K L M++ +    +  +L  + +   S++ L+   +  +  S
Sbjct: 151 FTTD--GLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKIS 208

Query: 352 RTLDQGLCPLVH----LQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPL 407
               + L  +      L  + + D ++   L        +L      S      +     
Sbjct: 209 ---PKDLETIARNCRSLVSVKVGDFEI-LELVGFFKAAANLEEFCGGSLNEDIGMPEK-Y 263

Query: 408 IHLTSIEDLILSDNHFQIPISLEPLFNH-SRLKIFDAENNEINAEIIESHSLTTPNFQLQ 466
           ++L     L      +  P  +  LF   ++++  D     +  E  +  +L      L+
Sbjct: 264 MNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETE--DHCTLIQKCPNLE 321

Query: 467 SLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNW-----------LLENNTKL 515
            L   +   D             L+ +R+      +   +            L +   +L
Sbjct: 322 VLETRNVIGD-RGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQEL 380

Query: 516 RQLSL----VNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDI--------LSR 563
             +++    + +  +      + +    RL+ + +      +PL+ G          L R
Sbjct: 381 EYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRR 440

Query: 564 LTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNL 623
              +       D  +         ++++ L     + E     + GC +L+ L +     
Sbjct: 441 FAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCF 500

Query: 624 -EGHMFSRNFNLTNLIWLQLEG 644
            E  + +    L +L +L ++G
Sbjct: 501 SERAIAAAVTKLPSLRYLWVQG 522

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 64.6 bits (157), Expect = 1e-10
 Identities = 40/287 (13%), Positives = 86/287 (29%), Gaps = 26/287 (9%)

Query: 94  ASLFTPFQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILSSLARLS 153
             LF    Q+  LDL    +      +    + +  NL++L     + +  +        
Sbjct: 286 PILFPFAAQIRKLDLLYALL---ETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCK 342

Query: 154 SLTSLDLS-------ANRLKGSIDIKGPKRLSR-LNNLKVFDLSGNLFNNSILSSLAR-- 203
            L  L +            +G +  +G   L++    L+   +  +   N  L S+    
Sbjct: 343 QLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYL 402

Query: 204 --LSSLRSLLLYDNRLEGSIDVKE-----FDSLSNLEELDMSYN--EIDNFEVPQACSGL 254
             L   R +LL        + +             L           + +  +       
Sbjct: 403 KNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYS 462

Query: 255 RKLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELY 314
             + ++ L  VG  D   L++     P+L  L++    F+E             SL+ L+
Sbjct: 463 PNVRWMLLGYVGESDEG-LMEFSRGCPNLQKLEMRGCCFSE--RAIAAAVTKLPSLRYLW 519

Query: 315 MDDARIALNTSFLQIIGESMPSIQYLSLSN-SSVSNNSRTLDQGLCP 360
           +   R ++    L  +     +I+ +       V+      +     
Sbjct: 520 VQGYRASMTGQDLMQMARPYWNIELIPSRRVPEVNQQGEIREMEHPA 566

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 63.4 bits (154), Expect = 3e-10
 Identities = 74/568 (13%), Positives = 142/568 (25%), Gaps = 79/568 (13%)

Query: 137 VGNLFNNSILSSLARLSSLTSLDLSANR-----------LKGSIDIKGPKRLSRLNNLKV 185
           +   +  +      R  +L SL L                 G +     +  + L  LK 
Sbjct: 57  MALCYTATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKS 116

Query: 186 FDLSGNLFNNSILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSY-NEIDN 244
                 + ++  L  LA+                           +LE L +   +    
Sbjct: 117 VHFRRMIVSDLDLDRLAKA-----------------------RADDLETLKLDKCSGFTT 153

Query: 245 FEVPQACSGLRKLSYLHLLR-VGIRDGSKLLQSMG-SFPSLNTLDLSYNNFTE-TVTTTT 301
             +    +  RK+  L +          K L  +     SL  L+     F + +     
Sbjct: 154 DGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLE 213

Query: 302 QGFPHFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPL 361
               + +SL  + + D  I     F +       +++     + +           L   
Sbjct: 214 TIARNCRSLVSVKVGDFEILELVGFFKA----AANLEEFCGGSLNEDIGMPEKYMNLVFP 269

Query: 362 VHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDN 421
             L  L ++       +P        +R LD+    L      + +    ++E L   + 
Sbjct: 270 RKLCRLGLSYMGPNE-MPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNV 328

Query: 422 HFQIPISLEPLFNH-SRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITF 480
                  LE L  +  +LK    E       + +   L +                    
Sbjct: 329 IGD--RGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQR----------------GL 370

Query: 481 PKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVN---------DSLVGPFRL 531
                   +LEY+ +    +  E    +      L    LV            L    R 
Sbjct: 371 IALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRS 430

Query: 532 PIHSHKQLRLLDVSKN--NFQGHIPLEIGDILSRLTVFNISMNAL-DGSIPSSFGNMNFL 588
            +   K+LR                  IG     +    +      D  +         L
Sbjct: 431 LLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNL 490

Query: 589 QFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNL---EGHMFSRNFNLTNLIWLQLEGN 645
           Q L++     +            SLR L +           +        N+  +     
Sbjct: 491 QKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSRRV 550

Query: 646 HFVGEIPQSLSKCSSLQGLFLSNNSLSG 673
             V +  +            L+  SL+G
Sbjct: 551 PEVNQQGEIREMEHPAH--ILAYYSLAG 576

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 61.5 bits (149), Expect = 1e-09
 Identities = 50/324 (15%), Positives = 96/324 (29%), Gaps = 51/324 (15%)

Query: 93  NASLFTPFQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVG--NLFNNSILSSLA 150
               F     LE       +     +    E+   L   + L  +G   +  N +     
Sbjct: 235 LVGFFKAAANLEEFCGGSLN----EDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFP 290

Query: 151 RLSSLTSLDLSANRLKGSIDIKGPKRLSRLNNLKVFDLSGNLFNNSILSSLARLSSLRSL 210
             + +  LDL    L           + +  NL+V +    + +  +         L+ L
Sbjct: 291 FAAQIRKLDLLYALL---ETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRL 347

Query: 211 LLYDNRLEGSIDVKE-----------FDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSY 259
            +     E  ++ +E                 LE + +  ++I N  +    + L+ L  
Sbjct: 348 RIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCD 407

Query: 260 LHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDAR 319
             L+ +   +    L       SL                        K L+       +
Sbjct: 408 FRLVLLDREERITDLPLDNGVRSLLI--------------------GCKKLRRFAFYLRQ 447

Query: 320 IALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVH----LQELHMADNDL- 374
             L    L  IG+  P+++++ L     S      D+GL         LQ+L M      
Sbjct: 448 GGLTDLGLSYIGQYSPNVRWMLLGYVGES------DEGLMEFSRGCPNLQKLEMRGCCFS 501

Query: 375 RGSLPWCLANMTSLRILDVSSNQL 398
             ++   +  + SLR L V   + 
Sbjct: 502 ERAIAAAVTKLPSLRYLWVQGYRA 525

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 60.3 bits (146), Expect = 2e-09
 Identities = 64/398 (16%), Positives = 117/398 (29%), Gaps = 75/398 (18%)

Query: 92  LNASLFTPFQQLESLDLRDN----------------------------------DIAGC- 116
               L   F  L SL L+                                          
Sbjct: 64  TPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMI 123

Query: 117 VENEGLERL--SRLSNLKMLNLVG--NLFNNSILSSLARLSSLTSLDLSANRLKGSIDIK 172
           V +  L+RL  +R  +L+ L L        + +LS +     + +L +  +      D K
Sbjct: 124 VSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSF-SEKDGK 182

Query: 173 G----PKRLSRLNNLKVFDLSGNLFNNSILSSLA-RLSSLRSLLLYDNRLEGSIDVKEFD 227
                 +  + L  L  +       +   L ++A    SL S+ +     E    V  F 
Sbjct: 183 WLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKV--GDFEILELVGFFK 240

Query: 228 SLSNLEELDMS--YNEIDNFEVPQACSGLRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNT 285
           + +NLEE        +I   E        RKL  L L  +G  +   L         +  
Sbjct: 241 AAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFA---AQIRK 297

Query: 286 LDLSYNNFTETVTTTTQGFPHFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSN- 344
           LDL Y         T       +    L + + R  +    L+++ +    ++ L +   
Sbjct: 298 LDLLYALL-----ETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERG 352

Query: 345 ----SSVSNNSRTLDQGLCPLVH----LQELHMADNDLR----GSLPWCLANMTSLRILD 392
                          +GL  L      L+ + +  +D+      S+   L N+   R++ 
Sbjct: 353 ADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVL 412

Query: 393 VSSNQLIGSIS-----SSPLIHLTSIEDLILSDNHFQI 425
           +   + I  +       S LI    +           +
Sbjct: 413 LDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGL 450

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 64.5 bits (157), Expect = 4e-11
 Identities = 60/289 (20%), Positives = 107/289 (37%), Gaps = 26/289 (8%)

Query: 58  ATDCCQWERVSCNNTMGRVVVLDLSQTHRGEYWYLNASL-------FTPFQQLESLDLRD 110
           A+D   W+ +          V     +     +    S             +++ +DL +
Sbjct: 43  ASDESLWQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSN 102

Query: 111 NDIAGCVENEGLERL-SRLSNLKMLNLVGNLFNNSILSSLARLSSLTSLDLSANRLKGSI 169
           +     +E   L  + S+ S L+ L+L G   ++ I+++LA+ S+L  L+LS        
Sbjct: 103 S----VIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCS---GF 155

Query: 170 DIKGPKRL-SRLNNLKVFDLSG--NLFNNSILSSLARLS-SLRSLLLYDNRLE-GSIDVK 224
                + L S  + L   +LS   +     +  ++A +S ++  L L   R      D+ 
Sbjct: 156 SEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLS 215

Query: 225 EF-DSLSNLEELDMSY-NEIDNFEVPQACSGLRKLSYLHLLR-VGIRDGSKLLQSMGSFP 281
                  NL  LD+S    + N    Q    L  L +L L R   I   +  L  +G  P
Sbjct: 216 TLVRRCPNLVHLDLSDSVMLKNDCF-QEFFQLNYLQHLSLSRCYDIIPET--LLELGEIP 272

Query: 282 SLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDARIALNTSFLQII 330
           +L TL +       T+    +  PH +     +   AR  +     Q I
Sbjct: 273 TLKTLQVFGIVPDGTLQLLKEALPHLQINCSHFTTIARPTIGNKKNQEI 321

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 60.7 bits (147), Expect = 9e-10
 Identities = 44/250 (17%), Positives = 88/250 (35%), Gaps = 9/250 (3%)

Query: 175 KRLSRLNNLKVFDLSGNLFNNSILSS-LARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLE 233
           KR  RL + +    + +L   ++      RL S   +     R      + E  S   ++
Sbjct: 37  KRWYRLASDESLWQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQ 96

Query: 234 ELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSY-NN 292
            +D+S + I+   +    S   KL  L L  + + D    + ++    +L  L+LS  + 
Sbjct: 97  HMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPI--VNTLAKNSNLVRLNLSGCSG 154

Query: 293 FT-ETVTTTTQGFPHFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNS 351
           F+   + T          L EL +              +     +I  L+LS    +   
Sbjct: 155 FSEFALQTLLSSCSR---LDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQK 211

Query: 352 RTLDQGLCPLVHLQELHMAD-NDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHL 410
             L   +    +L  L ++D   L+         +  L+ L +S    I   +   L  +
Sbjct: 212 SDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEI 271

Query: 411 TSIEDLILSD 420
            +++ L +  
Sbjct: 272 PTLKTLQVFG 281

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 46.4 bits (110), Expect = 3e-05
 Identities = 39/187 (20%), Positives = 71/187 (37%), Gaps = 8/187 (4%)

Query: 490 LEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSK-NN 548
           ++++ LS+  +     + +L   +KL+ LSL    L  P    +  +  L  L++S  + 
Sbjct: 95  VQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSG 154

Query: 549 FQGHIPLEIGDILSRLTVFNIS--MNALDGSIPSSFG-NMNFLQFLDLS--NNQLTGEIP 603
           F       +    SRL   N+S   +  +  +  +       +  L+LS     L     
Sbjct: 155 FSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDL 214

Query: 604 EHLAMGCVSLRSLALSN-NNLEGHMFSRNFNLTNLIWLQLEGNHFVGEI-PQSLSKCSSL 661
             L   C +L  L LS+   L+   F   F L  L  L L   + +       L +  +L
Sbjct: 215 STLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTL 274

Query: 662 QGLFLSN 668
           + L +  
Sbjct: 275 KTLQVFG 281

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 63.5 bits (155), Expect = 5e-11
 Identities = 50/225 (22%), Positives = 81/225 (36%), Gaps = 54/225 (24%)

Query: 205 SSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLR 264
           +  + L L  N+L  S+  K F  L+ L  L ++ N++           L+ L  L +  
Sbjct: 37  ADTKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQTLP-AGIFKELKNLETLWV-- 92

Query: 265 VGIRDGSKLLQSM--GSF---PSLNTLDLSYNNFTETVTTTTQGFPH--FKSLKELYMDD 317
                    LQ++  G F    +L  L L  N             P   F SL +L    
Sbjct: 93  -----TDNKLQALPIGVFDQLVNLAELRLDRNQLKS--------LPPRVFDSLTKL---- 135

Query: 318 ARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLC-PLVHLQELHMADNDLRG 376
                                YLSL      N  ++L +G+   L  L+EL + +N L+ 
Sbjct: 136 --------------------TYLSLGY----NELQSLPKGVFDKLTSLKELRLYNNQLKR 171

Query: 377 SLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDN 421
                   +T L+ L + +NQL   +       L  ++ L L +N
Sbjct: 172 VPEGAFDKLTELKTLKLDNNQLK-RVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 63.1 bits (154), Expect = 6e-11
 Identities = 49/199 (24%), Positives = 80/199 (40%), Gaps = 32/199 (16%)

Query: 103 LESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILSSL-----ARLSSLTS 157
            + LDL+ N ++            RL+ L++L L  N      L +L       L +L +
Sbjct: 39  TKKLDLQSNKLSSLPSKA----FHRLTKLRLLYLNDNK-----LQTLPAGIFKELKNLET 89

Query: 158 LDLSANRLKGSIDIKGPKRLSRLNNLKVFDLSGNLFNNSILSSL-----ARLSSLRSLLL 212
           L ++ N+L+ ++ I    +L  L  L        L  N +  SL       L+ L  L L
Sbjct: 90  LWVTDNKLQ-ALPIGVFDQLVNLAEL-------RLDRNQL-KSLPPRVFDSLTKLTYLSL 140

Query: 213 YDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGIRDGSK 272
             N L+ S+    FD L++L+EL +  N++       A   L +L  L L    ++    
Sbjct: 141 GYNELQ-SLPKGVFDKLTSLKELRLYNNQLKRVP-EGAFDKLTELKTLKLDNNQLK--RV 196

Query: 273 LLQSMGSFPSLNTLDLSYN 291
              +  S   L  L L  N
Sbjct: 197 PEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 59.6 bits (145), Expect = 1e-09
 Identities = 49/198 (24%), Positives = 78/198 (39%), Gaps = 34/198 (17%)

Query: 635 TNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNN---SLSGKIPRWLGNLTVLRHIIMP 691
            +   L L+ N       ++  + + L+ L+L++N   +L   I + L NL  L    + 
Sbjct: 37  ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLW---VT 93

Query: 692 KNHIEGPIPLE-FCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGT 750
            N ++  +P+  F QL  L  L +  N +  SLP                          
Sbjct: 94  DNKLQA-LPIGVFDQLVNLAELRLDRNQLK-SLPP-----------------------RV 128

Query: 751 FFNCLTLMILDLSYNHLNGNIPDRV-DGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLD 809
           F +   L  L L YN L  ++P  V D L+ L  L L +N L+        +L +L+ L 
Sbjct: 129 FDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLK 187

Query: 810 LSNNNLHGHIPSCFDNTT 827
           L NN L       FD+  
Sbjct: 188 LDNNQLKRVPEGAFDSLE 205

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 59.2 bits (144), Expect = 2e-09
 Identities = 54/210 (25%), Positives = 73/210 (34%), Gaps = 44/210 (20%)

Query: 736 HLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRV-DGLSQLSYLILAHNNLEGE 794
            L  N L   L    F     L +L L+ N L   +P  +   L  L  L +  N L+  
Sbjct: 43  DLQSNKL-SSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQ-A 99

Query: 795 VPIQL-CRLNQLQLLDLSNNNLHGHIPSCFDN----TTLHERYNNGSSLQPFETSFVIMG 849
           +PI +  +L  L  L L  N L    P  FD+    T L   YN   SL           
Sbjct: 100 LPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPK--------- 150

Query: 850 GMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQI-GNLTKIQT 908
                        FD  T              L  L L  N+L   +P      LT+++T
Sbjct: 151 -----------GVFDKLTS-------------LKELRLYNNQL-KRVPEGAFDKLTELKT 185

Query: 909 LNLSHNNLAGPIPSTFSNLRNIESLDLSYN 938
           L L +N L       F +L  ++ L L  N
Sbjct: 186 LKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 56.1 bits (136), Expect = 2e-08
 Identities = 48/193 (24%), Positives = 69/193 (35%), Gaps = 43/193 (22%)

Query: 756 TLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLC-RLNQLQLLDLSNNN 814
               LDL  N L+         L++L  L L  N L+  +P  +   L  L+ L +++N 
Sbjct: 38  DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNK 96

Query: 815 LHGHIPSC-FDN----TTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKS 869
           L   +P   FD       L    N   SL P            V         FD  TK 
Sbjct: 97  LQ-ALPIGVFDQLVNLAELRLDRNQLKSLPP-----------RV---------FDSLTK- 134

Query: 870 ITYTYQGRVPSLLSGLDLSCNRLIGHIPPQI-GNLTKIQTLNLSHNNLAGPIPSTFSNLR 928
                       L+ L L  N L   +P  +   LT ++ L L +N L       F  L 
Sbjct: 135 ------------LTYLSLGYNEL-QSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLT 181

Query: 929 NIESLDLSYNKLS 941
            +++L L  N+L 
Sbjct: 182 ELKTLKLDNNQLK 194

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 55.0 bits (133), Expect = 4e-08
 Identities = 56/214 (26%), Positives = 83/214 (38%), Gaps = 36/214 (16%)

Query: 592 DLSNNQLT---GEIPEHLAMGCVSLRSLALSNNN---LEGHMFSRNFNLTNLIWLQLEGN 645
           D S+ +LT     IP          + L L +N    L    F R   LT L  L L  N
Sbjct: 22  DCSSKKLTAIPSNIP-------ADTKKLDLQSNKLSSLPSKAFHR---LTKLRLLYLNDN 71

Query: 646 HFVGEIPQSLS-----KCSSLQGLFLSNN---SLSGKIPRWLGNLTVLRHIIMPKNHIEG 697
                  Q+L      +  +L+ L++++N   +L   +   L NL  LR   + +N ++ 
Sbjct: 72  KL-----QTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELR---LDRNQLKS 123

Query: 698 PIPLEFCQLRILQILDISDNNISGSLPS--CYDFVCIEQVHLSKNMLHGQLKEGTFFNCL 755
             P  F  L  L  L +  N +  SLP         ++++ L  N L  ++ EG F    
Sbjct: 124 LPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQLK-RVPEGAFDKLT 181

Query: 756 TLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHN 789
            L  L L  N L        D L +L  L L  N
Sbjct: 182 ELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 53.1 bits (128), Expect = 1e-07
 Identities = 39/174 (22%), Positives = 75/174 (43%), Gaps = 20/174 (11%)

Query: 560 ILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALS 619
           I +     ++  N L      +F  +  L+ L L++N+L   +P  +     +L +L ++
Sbjct: 35  IPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVT 93

Query: 620 NNNLE---GHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLS-----KCSSLQGLFLSNNSL 671
           +N L+     +F     L NL  L+L+ N       +SL        + L  L L  N L
Sbjct: 94  DNKLQALPIGVFD---QLVNLAELRLDRNQL-----KSLPPRVFDSLTKLTYLSLGYNEL 145

Query: 672 SGKIPRWL-GNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLP 724
              +P+ +   LT L+ + +  N ++      F +L  L+ L + +N +   +P
Sbjct: 146 Q-SLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK-RVP 197

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 44.2 bits (105), Expect = 1e-04
 Identities = 34/135 (25%), Positives = 49/135 (36%), Gaps = 30/135 (22%)

Query: 92  LNASLFTPFQQLESLDLRDNDIAGCVENEGLER--LSRLSNLKMLNLVGNLFNNSILSSL 149
           L   +F     L  L L  N +      + L       L+ L  L+L  N      L SL
Sbjct: 100 LPIGVFDQLVNLAELRLDRNQL------KSLPPRVFDSLTKLTYLSLGYNE-----LQSL 148

Query: 150 -----ARLSSLTSLDLSANRLKGSIDIKGPKRLSRLNNLKVFDLSGNLFNNSILS----S 200
                 +L+SL  L L  N+LK  +      +L+ L  L        L NN +      +
Sbjct: 149 PKGVFDKLTSLKELRLYNNQLK-RVPEGAFDKLTELKTL-------KLDNNQLKRVPEGA 200

Query: 201 LARLSSLRSLLLYDN 215
              L  L+ L L +N
Sbjct: 201 FDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 43.8 bits (104), Expect = 1e-04
 Identities = 56/240 (23%), Positives = 84/240 (35%), Gaps = 65/240 (27%)

Query: 386 TSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEP-LFNH-SRLKIFDA 443
              + LD+ SN+ + S+ S     LT +  L L+DN  Q   +L   +F     L+    
Sbjct: 37  ADTKKLDLQSNK-LSSLPSKAFHRLTKLRLLYLNDNKLQ---TLPAGIFKELKNLETLWV 92

Query: 444 ENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEE 503
            +N                 +LQ+L    G  D +     L                   
Sbjct: 93  TDN-----------------KLQAL--PIGVFDQLVNLAELR------------------ 115

Query: 504 FPNWLLENNTKLRQLSL-VNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILS 562
                L+ N +L+ L   V DSL            +L  L +  N  Q  +P  + D L+
Sbjct: 116 -----LDRN-QLKSLPPRVFDSLT-----------KLTYLSLGYNELQ-SLPKGVFDKLT 157

Query: 563 RLTVFNISMNALDGSIPSS-FGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNN 621
            L    +  N L   +P   F  +  L+ L L NNQL   +PE        L+ L L  N
Sbjct: 158 SLKELRLYNNQL-KRVPEGAFDKLTELKTLKLDNNQLK-RVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 43.0 bits (102), Expect = 3e-04
 Identities = 28/96 (29%), Positives = 42/96 (43%), Gaps = 11/96 (11%)

Query: 882 LSGLDLSCNRLIGHIPPQI-GNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKL 940
           L  L ++ N+L   +P  +   L  +  L L  N L    P  F +L  +  L L YN+L
Sbjct: 87  LETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNEL 145

Query: 941 SWKIPY----QLVELNTLAVFSVAYNNLSGKIPERA 972
              +P     +L  L  L +    YNN   ++PE A
Sbjct: 146 -QSLPKGVFDKLTSLKELRL----YNNQLKRVPEGA 176

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 42.7 bits (101), Expect = 4e-04
 Identities = 39/158 (24%), Positives = 72/158 (45%), Gaps = 16/158 (10%)

Query: 271 SKLLQSM--GSFPSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDARIALNTSFLQ 328
           SK L ++          LDL  N  +   +     F     L+ LY++D ++    +   
Sbjct: 25  SKKLTAIPSNIPADTKKLDLQSNKLSSLPSKA---FHRLTKLRLLYLNDNKL---QTLPA 78

Query: 329 IIGESMPSIQYLSLSNSSVSNNSRTLDQGL-CPLVHLQELHMADNDLRGSLP-WCLANMT 386
            I + + +++ L +++    N  + L  G+   LV+L EL +  N L+ SLP     ++T
Sbjct: 79  GIFKELKNLETLWVTD----NKLQALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLT 133

Query: 387 SLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQ 424
            L  L +  N+L  S+       LTS+++L L +N  +
Sbjct: 134 KLTYLSLGYNEL-QSLPKGVFDKLTSLKELRLYNNQLK 170

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 60.8 bits (148), Expect = 1e-10
 Identities = 30/132 (22%), Positives = 51/132 (38%), Gaps = 10/132 (7%)

Query: 133 MLNLVGNLFNNSILSSLARLSSLTSLDLSANRLKGSIDIKGPKRLSRLNNLKVFDLSGNL 192
           M+ L   L   +  +          LDL   ++     I+       L+     D S N 
Sbjct: 1   MVKLTAELIEQA--AQYTNAVRDRELDLRGYKIP---VIENLGAT--LDQFDAIDFSDNE 53

Query: 193 FNNSILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQACS 252
                L     L  L++LL+ +NR+   I      +L +L EL ++ N +         +
Sbjct: 54  IRK--LDGFPLLRRLKTLLVNNNRIC-RIGEGLDQALPDLTELILTNNSLVELGDLDPLA 110

Query: 253 GLRKLSYLHLLR 264
            L+ L+YL +LR
Sbjct: 111 SLKSLTYLCILR 122

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 56.2 bits (136), Expect = 4e-09
 Identities = 28/115 (24%), Positives = 38/115 (33%), Gaps = 12/115 (10%)

Query: 102 QLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILSSLARLSSLTSLDLS 161
           +   LDLR   I      E L     L     ++   N      L     L  L +L ++
Sbjct: 20  RDRELDLRGYKIP---VIENLGAT--LDQFDAIDFSDNEIRK--LDGFPLLRRLKTLLVN 72

Query: 162 ANRLKGSIDIKGPKRLSRLNNLKVFDLSGNLFNN-SILSSLARLSSLRSLLLYDN 215
            NR+   I          L +L    L+ N       L  LA L SL  L +  N
Sbjct: 73  NNRIC-RIG---EGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 53.5 bits (129), Expect = 3e-08
 Identities = 24/131 (18%), Positives = 49/131 (37%), Gaps = 11/131 (8%)

Query: 292 NFTETVTTTTQGFPHFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNS 351
             T  +      + +    +EL +   +I      ++ +G ++     +  S+    N  
Sbjct: 3   KLTAELIEQAAQYTNAVRDRELDLRGYKI----PVIENLGATLDQFDAIDFSD----NEI 54

Query: 352 RTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISS-SPLIHL 410
           R LD G   L  L+ L + +N +          +  L  L +++N  +  +    PL  L
Sbjct: 55  RKLD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNS-LVELGDLDPLASL 112

Query: 411 TSIEDLILSDN 421
            S+  L +  N
Sbjct: 113 KSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 53.1 bits (128), Expect = 4e-08
 Identities = 23/96 (23%), Positives = 35/96 (36%), Gaps = 9/96 (9%)

Query: 96  LFTPFQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILSSLARLSSL 155
           L     Q +++D  DN+I        L+    L  LK L +  N            L  L
Sbjct: 37  LGATLDQFDAIDFSDNEI------RKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90

Query: 156 TSLDLSANRLKGSIDIKGPKRLSRLNNLKVFDLSGN 191
           T L L+ N L    ++     L+ L +L    +  N
Sbjct: 91  TELILTNNSLV---ELGDLDPLASLKSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 53.1 bits (128), Expect = 4e-08
 Identities = 27/124 (21%), Positives = 46/124 (37%), Gaps = 7/124 (5%)

Query: 123 ERLSRLSNLKMLNLVGNLFNNSILSSLARLSSLTSLDLSANRLKGSIDIKGPKRLSRLNN 182
            + +     + L+L G      I +  A L    ++D S N ++    + G      L  
Sbjct: 13  AQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR---KLDG---FPLLRR 65

Query: 183 LKVFDLSGNLFNNSILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEI 242
           LK   ++ N            L  L  L+L +N L    D+    SL +L  L +  N +
Sbjct: 66  LKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPV 125

Query: 243 DNFE 246
            N +
Sbjct: 126 TNKK 129

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 48.1 bits (115), Expect = 2e-06
 Identities = 31/157 (19%), Positives = 54/157 (34%), Gaps = 17/157 (10%)

Query: 187 DLSGNLFNNSILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEI---D 243
            L+  L   +  +        R L L   ++    ++    +L   + +D S NEI   D
Sbjct: 3   KLTAELIEQA--AQYTNAVRDRELDLRGYKIPVIENLGA--TLDQFDAIDFSDNEIRKLD 58

Query: 244 NFEVPQACSGLRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTETVTTTTQG 303
            F        LR+L  L +    I    + L    + P L  L L+ N+  E        
Sbjct: 59  GFP------LLRRLKTLLVNNNRICRIGEGLDQ--ALPDLTELILTNNSLVE--LGDLDP 108

Query: 304 FPHFKSLKELYMDDARIALNTSFLQIIGESMPSIQYL 340
               KSL  L +    +     +   +   +P ++ L
Sbjct: 109 LASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVL 145

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 47.3 bits (113), Expect = 4e-06
 Identities = 23/117 (19%), Positives = 43/117 (36%), Gaps = 7/117 (5%)

Query: 332 ESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRIL 391
            +    + L L           ++     L     +  +DN++R  L      +  L+ L
Sbjct: 16  TNAVRDRELDLRG----YKIPVIENLGATLDQFDAIDFSDNEIR-KLD-GFPLLRRLKTL 69

Query: 392 DVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEI 448
            V++N+ I  I       L  + +LIL++N       L+PL +   L       N +
Sbjct: 70  LVNNNR-ICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPV 125

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 43.5 bits (103), Expect = 9e-05
 Identities = 16/88 (18%), Positives = 31/88 (35%), Gaps = 3/88 (3%)

Query: 633 NLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPK 692
           N      L L G   +  I    +       +  S+N +  K+      L  L+ +++  
Sbjct: 17  NAVRDRELDLRGYK-IPVIENLGATLDQFDAIDFSDNEIR-KLDG-FPLLRRLKTLLVNN 73

Query: 693 NHIEGPIPLEFCQLRILQILDISDNNIS 720
           N I          L  L  L +++N++ 
Sbjct: 74  NRICRIGEGLDQALPDLTELILTNNSLV 101

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 19/107 (17%), Positives = 37/107 (34%), Gaps = 9/107 (8%)

Query: 711 ILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLN-- 768
           ++ ++   I        + V   ++ L    +   + E           +D S N +   
Sbjct: 1   MVKLTAELIE-QAAQYTNAVRDRELDLRGYKI--PVIENLGATLDQFDAIDFSDNEIRKL 57

Query: 769 GNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNL 815
              P     L +L  L++ +N +          L  L  L L+NN+L
Sbjct: 58  DGFP----LLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSL 100

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 27/115 (23%), Positives = 44/115 (38%), Gaps = 8/115 (6%)

Query: 509 LENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFN 568
             N  + R+L L    +     L   +  Q   +D S N  +    L+   +L RL    
Sbjct: 15  YTNAVRDRELDLRGYKIPVIENLG-ATLDQFDAIDFSDNEIR---KLDGFPLLRRLKTLL 70

Query: 569 ISMNALDGSIPSSFGNMNFLQFLDLSNNQLT--GEIPEHLAMGCVSLRSLALSNN 621
           ++ N +          +  L  L L+NN L   G++ + LA    SL  L +  N
Sbjct: 71  VNNNRICRIGEGLDQALPDLTELILTNNSLVELGDL-DPLA-SLKSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 40.4 bits (95), Expect = 9e-04
 Identities = 13/59 (22%), Positives = 26/59 (44%), Gaps = 6/59 (10%)

Query: 885 LDLSCNRL--IGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLS 941
           +D S N +  +   P     L +++TL +++N +          L ++  L L+ N L 
Sbjct: 47  IDFSDNEIRKLDGFP----LLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV 101

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 62.4 bits (152), Expect = 3e-10
 Identities = 63/360 (17%), Positives = 126/360 (35%), Gaps = 59/360 (16%)

Query: 81  LSQTHRGEYWYLNASLFTPFQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNL 140
           LS  +R     + A L  P + L++L+          +  G      L   ++L+ +   
Sbjct: 7   LSAHNRA----VLAQLGCPIKNLDALEN----AQAIKKKLGKLGRQVLPPSELLDHLFFH 58

Query: 141 FN-NSILSSLARLSSLTSLDLSANRLKGSIDIKGPKRLSRL--------NNLKVFDLSGN 191
           +   +   S   LSSL  L+L+  R+        P + + +        + L   +L+  
Sbjct: 59  YEFQNQRFSAEVLSSLRQLNLAGVRM-------TPVKCTVVAAVLGSGRHALDEVNLASC 111

Query: 192 LFNNSILSSLAR-LSSLRSLLLYDNRL--EGSIDVKEF--DSLSNLEELDMSYNEIDNFE 246
             + + L +L       R L L  N L  E   D+++        +  L +S N +    
Sbjct: 112 QLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAG 171

Query: 247 VPQACSGLR---KLSYLHLLRVGIRD-GSKLL-QSMGSFPSLNTLDLSYNNFTET-VTTT 300
           V     GL     +++L LL  G+ D G +LL   +     L  L+++YN   +T     
Sbjct: 172 VAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALAL 231

Query: 301 TQGFPHFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCP 360
            +      SL+ L++    +  ++   Q++ +   + +  +    S++  +   +     
Sbjct: 232 ARAAREHPSLELLHLYFNEL--SSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEYWSVI 289

Query: 361 L------------------VHLQELHMADNDLRGSLPWCLANM----TSLRILDVSSNQL 398
           L                  + L    + D+      PW  A +      +R L       
Sbjct: 290 LSEVQRNLNSWDRARVQRHLELLLRDLEDSRGATLNPWRKAQLLRVEGEVRALLEQLGSS 349

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 47.0 bits (112), Expect = 2e-05
 Identities = 42/255 (16%), Positives = 81/255 (31%), Gaps = 27/255 (10%)

Query: 584 NMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLE-------GHMFSRNFNLTN 636
             + L  ++L++ QL       L    +  R L L  N+L          +     +   
Sbjct: 99  GRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLH--DQCQ 156

Query: 637 LIWLQLEGNHF----VGEIPQSLSKCSSLQGLFLSNNSLSGK----IPRWLGNLTVLRHI 688
           +  L+L  N      V  + + L+  +S+  L L +  L  +    +   L     L+ +
Sbjct: 157 ITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQEL 216

Query: 689 IMPKNHIEGPIPLEFCQL----RILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHG 744
            +  N       L   +       L++L +  N +S           +         +  
Sbjct: 217 NVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSE--GRQVLRDLGGAAEGGARVVV 274

Query: 745 QLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQL---CR 801
            L EGT  +    +IL     +LN     RV    +L    L  +      P +     R
Sbjct: 275 SLTEGTAVSEYWSVILSEVQRNLNSWDRARVQRHLELLLRDLEDSRGATLNPWRKAQLLR 334

Query: 802 LNQ-LQLLDLSNNNL 815
           +   ++ L     + 
Sbjct: 335 VEGEVRALLEQLGSS 349

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 44.7 bits (106), Expect = 1e-04
 Identities = 43/288 (14%), Positives = 97/288 (33%), Gaps = 39/288 (13%)

Query: 210 LLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGIRD 269
           LL   NR   +       +L  LE       ++      Q       L +L       ++
Sbjct: 6   LLSAHNRAVLAQLGCPIKNLDALENAQAIKKKL-GKLGRQVLPPSELLDHLFFHY-EFQN 63

Query: 270 GSKLLQSMGSFPSLNTLDLSYNNFT--------ETVTTTTQGFPHFKSLKELYMDDARIA 321
                + +    SL  L+L+    T          + +         +L E+ +   ++ 
Sbjct: 64  QRFSAEVL---SSLRQLNLAGVRMTPVKCTVVAAVLGSGR------HALDEVNLASCQL- 113

Query: 322 LNTSFLQIIGESMPSIQYLSLSNSSVSNNS-RTLDQGLC-PLVHLQELHMADNDLRGS-- 377
            + + L+ +       + L L  +S+   + + L   L      +  L +++N L  +  
Sbjct: 114 -DPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGV 172

Query: 378 --LPWCLANMTSLRILDVSSNQL----IGSISSSPLIHLTSIEDLILSDNHFQIP--ISL 429
             L   LA  TS+  L +    L    +  +++  L     +++L ++ N       ++L
Sbjct: 173 AVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQ-LDRNRQLQELNVAYNGAGDTAALAL 231

Query: 430 -EPLFNHSRLKIFDAENNEINAE----IIESHSLTTPNFQLQSLLLSS 472
                 H  L++     NE+++E    + +         ++   L   
Sbjct: 232 ARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEG 279

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 60.1 bits (146), Expect = 3e-10
 Identities = 35/146 (23%), Positives = 62/146 (42%), Gaps = 26/146 (17%)

Query: 104 ESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILS----SLARLSSLTSLD 159
             L L +N+          ++L +L  +       N  NN I      +    S +  + 
Sbjct: 35  AELRLNNNEFTVLEATGIFKKLPQLRKI-------NFSNNKITDIEEGAFEGASGVNEIL 87

Query: 160 LSANRLKGSIDIKGPKRLSRLNNLKVFDLSGNLFNNSILSSL-----ARLSSLRSLLLYD 214
           L++NRL+ ++     K    L +LK   L  N      ++ +       LSS+R L LYD
Sbjct: 88  LTSNRLE-NVQ---HKMFKGLESLKTLMLRSNR-----ITCVGNDSFIGLSSVRLLSLYD 138

Query: 215 NRLEGSIDVKEFDSLSNLEELDMSYN 240
           N++  ++    FD+L +L  L++  N
Sbjct: 139 NQIT-TVAPGAFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 56.2 bits (136), Expect = 7e-09
 Identities = 30/131 (22%), Positives = 51/131 (38%), Gaps = 7/131 (5%)

Query: 542 LDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGE 601
           L ++ N F       I   L +L   N S N +      +F   + +  + L++N+L   
Sbjct: 37  LRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLE-N 95

Query: 602 IPEHLAMGCVSLRSLALSNNNLE---GHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKC 658
           +   +  G  SL++L L +N +       F     L+++  L L  N      P +    
Sbjct: 96  VQHKMFKGLESLKTLMLRSNRITCVGNDSFI---GLSSVRLLSLYDNQITTVAPGAFDTL 152

Query: 659 SSLQGLFLSNN 669
            SL  L L  N
Sbjct: 153 HSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 53.9 bits (130), Expect = 4e-08
 Identities = 28/120 (23%), Positives = 51/120 (42%), Gaps = 7/120 (5%)

Query: 710 QILDISDNNISGSLPSCYDFVCIEQVH---LSKNMLHGQLKEGTFFNCLTLMILDLSYNH 766
             L +++N  +  L +   F  + Q+     S N +   ++EG F     +  + L+ N 
Sbjct: 35  AELRLNNNEFT-VLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGASGVNEILLTSNR 92

Query: 767 LNGNIPDRV-DGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDN 825
           L  N+  ++  GL  L  L+L  N +          L+ ++LL L +N +    P  FD 
Sbjct: 93  LE-NVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDT 151

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 47.0 bits (112), Expect = 9e-06
 Identities = 26/181 (14%), Positives = 50/181 (27%), Gaps = 56/181 (30%)

Query: 760 LDLSYNHLNGNIPDRV-DGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGH 818
           L L+ N         +   L QL  +  ++N +           + +  + L++N L   
Sbjct: 37  LRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRL--- 93

Query: 819 IPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRV 878
                    +  +                               F               
Sbjct: 94  -------ENVQHK------------------------------MFKGLES---------- 106

Query: 879 PSLLSGLDLSCNRLIGHIPPQI-GNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSY 937
              L  L L  NR+   +       L+ ++ L+L  N +    P  F  L ++ +L+L  
Sbjct: 107 ---LKTLMLRSNRI-TCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLA 162

Query: 938 N 938
           N
Sbjct: 163 N 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 45.0 bits (107), Expect = 4e-05
 Identities = 20/92 (21%), Positives = 41/92 (44%), Gaps = 8/92 (8%)

Query: 335 PSIQYLSLSNSSVSNNSRTLDQG-LCPLVHLQELHMADNDLRGSLPW-CLANMTSLRILD 392
           P ++ ++ SN    N    +++G       + E+ +  N L  ++       + SL+ L 
Sbjct: 57  PQLRKINFSN----NKITDIEEGAFEGASGVNEILLTSNRLE-NVQHKMFKGLESLKTLM 111

Query: 393 VSSNQLIGSISSSPLIHLTSIEDLILSDNHFQ 424
           + SN++   + +   I L+S+  L L DN   
Sbjct: 112 LRSNRI-TCVGNDSFIGLSSVRLLSLYDNQIT 142

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 44.3 bits (105), Expect = 7e-05
 Identities = 14/61 (22%), Positives = 30/61 (49%), Gaps = 2/61 (3%)

Query: 882 LSGLDLSCNRLIGHIPPQI-GNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKL 940
           ++ + L+ NRL   +  ++   L  ++TL L  N +      +F  L ++  L L  N++
Sbjct: 83  VNEILLTSNRLEN-VQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQI 141

Query: 941 S 941
           +
Sbjct: 142 T 142

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 44.3 bits (105), Expect = 8e-05
 Identities = 29/132 (21%), Positives = 49/132 (37%), Gaps = 6/132 (4%)

Query: 589 QFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNN---NLEGHMFSRNFNLTNLIWLQLEGN 645
             L L+NN+ T      +      LR +  SNN   ++E   F      + +  + L  N
Sbjct: 35  AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEG---ASGVNEILLTSN 91

Query: 646 HFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQ 705
                  +      SL+ L L +N ++         L+ +R + +  N I    P  F  
Sbjct: 92  RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDT 151

Query: 706 LRILQILDISDN 717
           L  L  L++  N
Sbjct: 152 LHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 43.5 bits (103), Expect = 1e-04
 Identities = 32/145 (22%), Positives = 55/145 (37%), Gaps = 19/145 (13%)

Query: 205 SSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLR 264
                L L +N          F  L  L +++ S N+I + E   A  G   ++ + L  
Sbjct: 32  QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIE-EGAFEGASGVNEILL-- 88

Query: 265 VGIRDGSKLLQSM--GSF---PSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDAR 319
                 S  L+++    F    SL TL L  N  T     +   F    S++ L + D +
Sbjct: 89  -----TSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDS---FIGLSSVRLLSLYDNQ 140

Query: 320 IALNTSFLQIIGESMPSIQYLSLSN 344
           I   T+      +++ S+  L+L  
Sbjct: 141 I---TTVAPGAFDTLHSLSTLNLLA 162

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 17/86 (19%), Positives = 33/86 (38%), Gaps = 9/86 (10%)

Query: 885 LDLSCNRLIGHIPPQIG--NLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLS- 941
           L L+ N     +        L +++ +N S+N +       F     +  + L+ N+L  
Sbjct: 37  LRLNNNE-FTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLEN 95

Query: 942 --WKIPYQLVELNTLAVFSVAYNNLS 965
              K+   L  L TL    +  N ++
Sbjct: 96  VQHKMFKGLESLKTL---MLRSNRIT 118

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 60.0 bits (146), Expect = 5e-10
 Identities = 29/113 (25%), Positives = 44/113 (38%), Gaps = 7/113 (6%)

Query: 579 PSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLE---GHMFSRNFNLT 635
           P +F     L+ +DLSNNQ++ E+      G  SL SL L  N +      +F     L 
Sbjct: 49  PGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKITELPKSLFEG---LF 104

Query: 636 NLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHI 688
           +L  L L  N        +     +L  L L +N L          L  ++ +
Sbjct: 105 SLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTM 157

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 53.9 bits (130), Expect = 4e-08
 Identities = 34/149 (22%), Positives = 58/149 (38%), Gaps = 33/149 (22%)

Query: 104 ESLDLRDNDIAGCVENEGLER--LSRLSNLKMLNLVGNLFNNSILSSLA-----RLSSLT 156
             + L  N I        +     S    L+ ++L  N      +S LA      L SL 
Sbjct: 35  TEIRLEQNTIKV------IPPGAFSPYKKLRRIDLSNNQ-----ISELAPDAFQGLRSLN 83

Query: 157 SLDLSANRLKGSIDIKGPKRLSRLNNLKVFDLSGNLFNNSILSSLAR-----LSSLRSLL 211
           SL L  N++   +          L +L++  L+ N      ++ L       L +L  L 
Sbjct: 84  SLVLYGNKIT-ELP---KSLFEGLFSLQLLLLNANK-----INCLRVDAFQDLHNLNLLS 134

Query: 212 LYDNRLEGSIDVKEFDSLSNLEELDMSYN 240
           LYDN+L+ +I    F  L  ++ + ++ N
Sbjct: 135 LYDNKLQ-TIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 52.0 bits (125), Expect = 2e-07
 Identities = 38/165 (23%), Positives = 57/165 (34%), Gaps = 28/165 (16%)

Query: 650 EIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRIL 709
           EIP +L    ++  + L  N++    P        LR I +  N I    P  F  LR L
Sbjct: 25  EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSL 82

Query: 710 QILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNG 769
             L +  N I+  LP                          F    +L +L L+ N +N 
Sbjct: 83  NSLVLYGNKIT-ELPK-----------------------SLFEGLFSLQLLLLNANKIN- 117

Query: 770 NIPDRV-DGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNN 813
            +       L  L+ L L  N L+         L  +Q + L+ N
Sbjct: 118 CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 51.6 bits (124), Expect = 2e-07
 Identities = 32/132 (24%), Positives = 56/132 (42%), Gaps = 10/132 (7%)

Query: 542 LDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPS-SFGNMNFLQFLDLSNNQLTG 600
           + + +N  +  IP        +L   ++S N +   +   +F  +  L  L L  N++T 
Sbjct: 37  IRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKIT- 93

Query: 601 EIPEHLAMGCVSLRSLALSNNNLEG---HMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSK 657
           E+P+ L  G  SL+ L L+ N +       F    +L NL  L L  N        + S 
Sbjct: 94  ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQ---DLHNLNLLSLYDNKLQTIAKGTFSP 150

Query: 658 CSSLQGLFLSNN 669
             ++Q + L+ N
Sbjct: 151 LRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 51.6 bits (124), Expect = 3e-07
 Identities = 32/182 (17%), Positives = 54/182 (29%), Gaps = 59/182 (32%)

Query: 760 LDLSYNHLNGNIPDRV-DGLSQLSYLILAHNNLEGEVPIQLC-RLNQLQLLDLSNNNLHG 817
           + L  N +   IP        +L  + L++N +  E+       L  L  L L  N +  
Sbjct: 37  IRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKI-- 92

Query: 818 HIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGR 877
                             + L                        F+             
Sbjct: 93  ------------------TELPK--------------------SLFEGLFS--------- 105

Query: 878 VPSLLSGLDLSCNRLIGHIPPQI-GNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLS 936
               L  L L+ N++   +      +L  +  L+L  N L      TFS LR I+++ L+
Sbjct: 106 ----LQLLLLNANKI-NCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLA 160

Query: 937 YN 938
            N
Sbjct: 161 QN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 51.2 bits (123), Expect = 4e-07
 Identities = 28/121 (23%), Positives = 47/121 (38%), Gaps = 10/121 (8%)

Query: 710 QILDISDNNISGSLPSCYDFVCIEQV---HLSKNMLHGQLKEGTFFNCLTLMILDLSYNH 766
             + +  N I   +P    F   +++    LS N +  +L    F    +L  L L  N 
Sbjct: 35  TEIRLEQNTIK-VIPP-GAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNK 91

Query: 767 LNGNIPDRV-DGLSQLSYLILAHNNLEGEVPIQL-CRLNQLQLLDLSNNNLHGHIPSCFD 824
           +   +P  + +GL  L  L+L  N +   + +     L+ L LL L +N L       F 
Sbjct: 92  IT-ELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFS 149

Query: 825 N 825
            
Sbjct: 150 P 150

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 50.8 bits (122), Expect = 5e-07
 Identities = 30/131 (22%), Positives = 53/131 (40%), Gaps = 22/131 (16%)

Query: 92  LNASLFTPFQQLESLDLRDNDIAGCVENEGLER--LSRLSNLKMLNLVGNLFNNSILSSL 149
           +    F+P+++L  +DL +N I        L       L +L  L L GN      ++ L
Sbjct: 47  IPPGAFSPYKKLRRIDLSNNQI------SELAPDAFQGLRSLNSLVLYGNK-----ITEL 95

Query: 150 -----ARLSSLTSLDLSANRLKGSIDIKGPKRLSRLNNLKVFDLSGNLFNNSILSSLARL 204
                  L SL  L L+AN++   +          L+NL +  L  N        + + L
Sbjct: 96  PKSLFEGLFSLQLLLLNANKIN-CLR---VDAFQDLHNLNLLSLYDNKLQTIAKGTFSPL 151

Query: 205 SSLRSLLLYDN 215
            +++++ L  N
Sbjct: 152 RAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 49.3 bits (118), Expect = 2e-06
 Identities = 31/147 (21%), Positives = 53/147 (36%), Gaps = 24/147 (16%)

Query: 205 SSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHL-- 262
            ++  + L  N ++  I    F     L  +D+S N+I     P A  GLR L+ L L  
Sbjct: 32  ETITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQISELA-PDAFQGLRSLNSLVLYG 89

Query: 263 -----LRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDD 317
                L   + +G           SL  L L+ N            F    +L  L + D
Sbjct: 90  NKITELPKSLFEG---------LFSLQLLLLNANKIN---CLRVDAFQDLHNLNLLSLYD 137

Query: 318 ARIALNTSFLQIIGESMPSIQYLSLSN 344
            ++    +  +     + +IQ + L+ 
Sbjct: 138 NKL---QTIAKGTFSPLRAIQTMHLAQ 161

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 46.9 bits (112), Expect = 1e-05
 Identities = 28/158 (17%), Positives = 48/158 (30%), Gaps = 40/158 (25%)

Query: 271 SKLLQSM--GSFPSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDARIALNTSFLQ 328
            K L  +      ++  + L  N               F   K+L               
Sbjct: 20  GKGLTEIPTNLPETITEIRLEQNTIKVIPPGA------FSPYKKL--------------- 58

Query: 329 IIGESMPSIQYLSLSNSSVSNNSRTLDQGLC-PLVHLQELHMADNDLRGSLPW-CLANMT 386
                    + + LSN    N    L       L  L  L +  N +   LP      + 
Sbjct: 59  ---------RRIDLSN----NQISELAPDAFQGLRSLNSLVLYGNKIT-ELPKSLFEGLF 104

Query: 387 SLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQ 424
           SL++L +++N++   +       L ++  L L DN  Q
Sbjct: 105 SLQLLLLNANKI-NCLRVDAFQDLHNLNLLSLYDNKLQ 141

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 2/61 (3%)

Query: 882 LSGLDLSCNRLIGHIPPQI-GNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKL 940
           L+ L L  N++   +P  +   L  +Q L L+ N +       F +L N+  L L  NKL
Sbjct: 82  LNSLVLYGNKI-TELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKL 140

Query: 941 S 941
            
Sbjct: 141 Q 141

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 32/133 (24%), Positives = 49/133 (36%), Gaps = 9/133 (6%)

Query: 589 QFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNN---NLEGHMFSRNFNLTNLIWLQLEGN 645
             + L  N +   IP         LR + LSNN    L    F     L +L  L L GN
Sbjct: 35  TEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQISELAPDAFQG---LRSLNSLVLYGN 90

Query: 646 HFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWL-GNLTVLRHIIMPKNHIEGPIPLEFC 704
                         SLQ L L+ N ++  +      +L  L  + +  N ++      F 
Sbjct: 91  KITELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFS 149

Query: 705 QLRILQILDISDN 717
            LR +Q + ++ N
Sbjct: 150 PLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 45.4 bits (108), Expect = 4e-05
 Identities = 24/92 (26%), Positives = 41/92 (44%), Gaps = 9/92 (9%)

Query: 885 LDLSCNRLIGHIPPQI-GNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLS-- 941
           + L  N  I  IPP       K++ ++LS+N ++   P  F  LR++ SL L  NK++  
Sbjct: 37  IRLEQNT-IKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITEL 95

Query: 942 -WKIPYQLVELNTLAVFSVAYNNLSGKIPERA 972
              +   L  L  L    +  N ++  +   A
Sbjct: 96  PKSLFEGLFSLQLL---LLNANKIN-CLRVDA 123

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 61.0 bits (147), Expect = 2e-09
 Identities = 94/668 (14%), Positives = 193/668 (28%), Gaps = 220/668 (32%)

Query: 425 IPISLEPLFNHSRLK-IFDAENNEINAEIIESHSLTTPNFQLQS-----LLLSSGYRDGI 478
           + +  +   ++   K + D   + ++ E I+ H + + +    +      LLS       
Sbjct: 22  LSVFEDAFVDNFDCKDVQDMPKSILSKEEID-HIIMSKDAVSGTLRLFWTLLSKQEE--- 77

Query: 479 TFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLEN-NTKLRQLSLVNDSLVGPFRLPIHSHK 537
              KF+     + Y              +L+    T+ RQ S++    +   R  +++  
Sbjct: 78  MVQKFVEEVLRINY-------------KFLMSPIKTEQRQPSMMTRMYI-EQRDRLYNDN 123

Query: 538 QLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQ 597
           Q+     +K N            +SRL  +     AL                L+L   +
Sbjct: 124 QV----FAKYN------------VSRLQPYLKLRQAL----------------LELRPAK 151

Query: 598 ---LTGEIPEHLAM-GC--VSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGN----HF 647
              + G       + G     +      +  ++  M  + F      WL L  N      
Sbjct: 152 NVLIDG-------VLGSGKTWVALDVCLSYKVQCKMDFKIF------WLNL-KNCNSPET 197

Query: 648 VGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNL-TVLRHIIMPKNHIEGPIPL-EFCQ 705
           V E+ Q L     +   + S +  S  I   + ++   LR ++  K +    + L     
Sbjct: 198 VLEMLQKL--LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQN 255

Query: 706 LRILQILDIS--------DNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKE--GTFFNC- 754
            +     ++S           ++  L +      I   H S  +   ++K     + +C 
Sbjct: 256 AKAWNAFNLSCKILLTTRFKQVTDFLSAATTTH-ISLDHHSMTLTPDEVKSLLLKYLDCR 314

Query: 755 -------------LTL--------------------------MILDLSYNHL-------- 767
                          L                           I++ S N L        
Sbjct: 315 PQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKM 374

Query: 768 ---------NGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGH 818
                    + +IP  +     LS  ++  + ++ +V + + +L++  L++         
Sbjct: 375 FDRLSVFPPSAHIPTIL-----LS--LIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTIS 427

Query: 819 IPSCF--------DNTTLH----ERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFT 866
           IPS +        +   LH    + YN   +                D     L+ + ++
Sbjct: 428 IPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSD------------DLIPPYLDQYFYS 475

Query: 867 TKSITY----TYQGRVPSLLSG--LDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPI 920
              I +           +L     LD    R +           KI+  + + N  +G I
Sbjct: 476 --HIGHHLKNIEHPERMTLFRMVFLDF---RFLE---------QKIRHDSTAWNA-SGSI 520

Query: 921 PSTFSNLRN----IESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPE-RAAQF 975
            +T   L+     I   D  Y +L          +N +  F                 + 
Sbjct: 521 LNTLQQLKFYKPYICDNDPKYERL----------VNAILDFLPKIEENLICSKYTDLLRI 570

Query: 976 ATFNESSY 983
           A   E   
Sbjct: 571 ALMAEDEA 578

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 53.3 bits (127), Expect = 4e-07
 Identities = 91/568 (16%), Positives = 168/568 (29%), Gaps = 149/568 (26%)

Query: 139 NLFN-NSILS--SLARLSSLTSLDLSANRLKGSIDI-----KGP-KR---LSRLNNLKVF 186
            L+N N + +  +++RL     L  +   L+ + ++      G  K    L    + KV 
Sbjct: 118 RLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQ 177

Query: 187 DLSGNLFNNSIL-SSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNF 245
                  +  I   +L   +S  ++L    +L   ID   + S S     D S N     
Sbjct: 178 CK----MDFKIFWLNLKNCNSPETVLEMLQKLLYQID-PNWTSRS-----DHSSNIKLRI 227

Query: 246 EVPQACSGLRKL----SYLHLLRVGIRD------------GSKLLQSMGSFPSLNTLDLS 289
                 + LR+L     Y + L V + +              K+L        L T    
Sbjct: 228 H--SIQAELRRLLKSKPYENCLLV-LLNVQNAKAWNAFNLSCKIL--------LTTRFKQ 276

Query: 290 YNNFTETVTTTTQGFPHFKSLKELYMDDARIALNTS-----FLQIIGESMPSIQYLSLSN 344
             +F    TT             + +D   + L         L+ +           L  
Sbjct: 277 VTDFLSAATT-----------THISLDHHSMTLTPDEVKSLLLKYLDCRPQ-----DLPR 320

Query: 345 SSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSL-RILDVSSNQLIGSIS 403
             ++ N R L   +        L   DN       W   N   L  I++ S N L     
Sbjct: 321 EVLTTNPRRL--SIIAESIRDGLATWDN-------WKHVNCDKLTTIIESSLNVL----- 366

Query: 404 SSPLIHLTSIEDL-ILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPN 462
             P  +    + L +   +   IP  L        L +   +  + +  ++ +       
Sbjct: 367 -EPAEYRKMFDRLSVFPPS-AHIPTIL--------LSLIWFDVIKSDVMVVVNK------ 410

Query: 463 FQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVN 522
               SL+     +      +   +   +                  LE   KL     ++
Sbjct: 411 LHKYSLVE----KQP---KESTISIPSI-----------------YLELKVKLENEYALH 446

Query: 523 DSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSF 582
            S+V  + +P    K     D+       +    IG  L      NI            F
Sbjct: 447 RSIVDHYNIP----KTFDSDDLIPPYLDQYFYSHIGHHLK-----NIEHPERMTLFRMVF 497

Query: 583 GNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQL 642
            +  FL+       ++  +     A G  S+ +        + ++   +     L+   L
Sbjct: 498 LDFRFLE------QKIRHDSTAWNASG--SILNTLQQLKFYKPYICDNDPKYERLVNAIL 549

Query: 643 EGNHFVGEIPQSL--SKCSSLQGLFLSN 668
               F+ +I ++L  SK + L  + L  
Sbjct: 550 ---DFLPKIEENLICSKYTDLLRIALMA 574

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.9 bits (126), Expect = 5e-07
 Identities = 74/455 (16%), Positives = 132/455 (29%), Gaps = 141/455 (30%)

Query: 1   MGGS-KSKMVVMFVL---LLIIFEGG--W-SEGCLNHERFALLQL--------------- 38
           + GS K+ + +   L   +    +    W +    N     L  L               
Sbjct: 158 VLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRS 217

Query: 39  ------------------KLFFIDPYNYLLDWVDDEGATDCCQWER-------VSCN--- 70
                             +L    PY   L  + +                  +SC    
Sbjct: 218 DHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN-------VQNAKAWNAFNLSCKILL 270

Query: 71  NTMGRVVVLDLSQTHRGEYWYLNASL-FTPFQQLE----SLDLRDND------------I 113
            T  + V   LS          + S+  TP +        LD R  D            +
Sbjct: 271 TTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRL 330

Query: 114 AGCVENEGL-ERLSRLSNLKMLNLVGNLFNNSILSSLARLSSLTSLDLSANRLKGSI--- 169
           +   E+  + + L+   N K +N   +     I SSL     L   +      + S+   
Sbjct: 331 SIIAES--IRDGLATWDNWKHVNC--DKLTTIIESSLN---VLEPAEYRKMFDRLSVFPP 383

Query: 170 DIKGP-KRLSRL-NNLKVFDLSGNLFNNSILSSLARLS-----------SLRSLLLYDNR 216
               P   LS +  ++   D+        +++ L + S           S+ S+ L + +
Sbjct: 384 SAHIPTILLSLIWFDVIKSDVM------VVVNKLHKYSLVEKQPKESTISIPSIYL-ELK 436

Query: 217 LEGSID-------VKEFDSLSNLEELDMSYNEIDNF------------EVPQACSGLRKL 257
           ++   +       V  ++     +  D+    +D +            E P+  +  R +
Sbjct: 437 VKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMV 496

Query: 258 SYLHL--LRVGIRDGSKLLQSMGSFPSLNTL-DLS-YNNF-TETVTTTTQ---GFPHF-- 307
            +L    L   IR  S    + GS   LNTL  L  Y  +  +      +       F  
Sbjct: 497 -FLDFRFLEQKIRHDSTAWNASGS--ILNTLQQLKFYKPYICDNDPKYERLVNAILDFLP 553

Query: 308 ----KSLKELYMDDARIALNTSFLQIIGESMPSIQ 338
                 +   Y D  RIAL      I  E+   +Q
Sbjct: 554 KIEENLICSKYTDLLRIALMAEDEAIFEEAHKQVQ 588

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 55.5 bits (134), Expect = 4e-09
 Identities = 29/124 (23%), Positives = 47/124 (37%), Gaps = 7/124 (5%)

Query: 124 RLSRLSNLKMLNLVGNLFNN-SILSSLARLSSLTSLDLSANRLKGSIDIKGPKRLSRLNN 182
           R    S++K L L  +  N   +         L  L      L     I     L +LN 
Sbjct: 12  RNRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT---SIAN---LPKLNK 65

Query: 183 LKVFDLSGNLFNNSILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEI 242
           LK  +LS N  +  +     +  +L  L L  N+++    ++    L NL+ LD+   E+
Sbjct: 66  LKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEV 125

Query: 243 DNFE 246
            N  
Sbjct: 126 TNLN 129

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 53.9 bits (130), Expect = 1e-08
 Identities = 32/117 (27%), Positives = 55/117 (47%), Gaps = 13/117 (11%)

Query: 75  RVVVLDLSQTHRGEYWYLNASLFTPFQQLESLDLRDNDIAGCVENEGLERLSRLSNLKML 134
           + +VLD S+++ G+       L   F++LE L   +  +        +  L +L+ LK L
Sbjct: 20  KELVLDNSRSNEGK----LEGLTDEFEELEFLSTINVGL------TSIANLPKLNKLKKL 69

Query: 135 NLVGNLFNNSILSSLARLSSLTSLDLSANRLKGSIDIKGPKRLSRLNNLKVFDLSGN 191
            L  N  +  +     +  +LT L+LS N++K   D+   + L +L NLK  DL   
Sbjct: 70  ELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIK---DLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 51.2 bits (123), Expect = 1e-07
 Identities = 28/122 (22%), Positives = 50/122 (40%), Gaps = 5/122 (4%)

Query: 327 LQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMT 386
           L++   +   ++ L L NS   +N   L+        L+ L   +  L  S+   L  + 
Sbjct: 9   LELRNRTPSDVKELVLDNSR--SNEGKLEGLTDEFEELEFLSTINVGLT-SIA-NLPKLN 64

Query: 387 SLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAENN 446
            L+ L++S N+ +            ++  L LS N  +   ++EPL     LK  D  N 
Sbjct: 65  KLKKLELSDNR-VSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

Query: 447 EI 448
           E+
Sbjct: 124 EV 125

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 48.5 bits (116), Expect = 9e-07
 Identities = 28/138 (20%), Positives = 54/138 (39%), Gaps = 7/138 (5%)

Query: 203 RLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHL 262
             S ++ L+L ++R          D    LE L      + +         L KL  L L
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIAN---LPKLNKLKKLEL 71

Query: 263 LRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDARIAL 322
               +  G ++L      P+L  L+LS N   +   +T +     ++LK L + +  +  
Sbjct: 72  SDNRVSGGLEVL--AEKCPNLTHLNLSGNKIKD--LSTIEPLKKLENLKSLDLFNCEVTN 127

Query: 323 NTSFLQIIGESMPSIQYL 340
              + + + + +P + YL
Sbjct: 128 LNDYRENVFKLLPQLTYL 145

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 48.1 bits (115), Expect = 1e-06
 Identities = 29/117 (24%), Positives = 56/117 (47%), Gaps = 9/117 (7%)

Query: 306 HFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQ 365
               +KEL +D++R   N   L+ + +    +++LS  N        ++   L  L  L+
Sbjct: 15  TPSDVKELVLDNSRS--NEGKLEGLTDEFEELEFLSTIN----VGLTSIA-NLPKLNKLK 67

Query: 366 ELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISS-SPLIHLTSIEDLILSDN 421
           +L ++DN + G L        +L  L++S N+ I  +S+  PL  L +++ L L + 
Sbjct: 68  KLELSDNRVSGGLEVLAEKCPNLTHLNLSGNK-IKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 40.8 bits (96), Expect = 4e-04
 Identities = 26/107 (24%), Positives = 37/107 (34%), Gaps = 5/107 (4%)

Query: 591 LDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNF-NLTNLIWLQLEGNHFVG 649
           L L N++      E L      L  L+  N  L       N   L  L  L+L  N   G
Sbjct: 22  LVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIA---NLPKLNKLKKLELSDNRVSG 78

Query: 650 EIPQSLSKCSSLQGLFLSNNSLSG-KIPRWLGNLTVLRHIIMPKNHI 695
            +     KC +L  L LS N +        L  L  L+ + +    +
Sbjct: 79  GLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEV 125

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 40.8 bits (96), Expect = 5e-04
 Identities = 21/84 (25%), Positives = 33/84 (39%), Gaps = 7/84 (8%)

Query: 882 LSGLDLSCNRL--IGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNK 939
           L  L      L  I ++P     L K++ L LS N ++G +        N+  L+LS NK
Sbjct: 44  LEFLSTINVGLTSIANLP----KLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNK 99

Query: 940 L-SWKIPYQLVELNTLAVFSVAYN 962
           +        L +L  L    +   
Sbjct: 100 IKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 40.0 bits (94), Expect = 7e-04
 Identities = 18/99 (18%), Positives = 40/99 (40%), Gaps = 3/99 (3%)

Query: 868 KSITYTYQGRVPSLLSGLDLSCNRL-IGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSN 926
           + I    + R PS +  L L  +R   G +        +++ L+  +  L     +    
Sbjct: 5   RRIHLELRNRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT--SIANLPK 62

Query: 927 LRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLS 965
           L  ++ L+LS N++S  +     +   L   +++ N + 
Sbjct: 63  LNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIK 101

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 56.7 bits (136), Expect = 2e-08
 Identities = 17/84 (20%), Positives = 39/84 (46%), Gaps = 2/84 (2%)

Query: 882 LSGLDLSCNRLIGHIPPQ-IGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKL 940
           L+ L +   + + H+  + +  L +++ L +  + L    P  F     +  L+LS+N L
Sbjct: 33  LTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNAL 92

Query: 941 SWKIPYQLVELNTLAVFSVAYNNL 964
              + ++ V+  +L    ++ N L
Sbjct: 93  ES-LSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 56.3 bits (135), Expect = 2e-08
 Identities = 16/107 (14%), Positives = 34/107 (31%), Gaps = 3/107 (2%)

Query: 886 DLSC-NRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPS-TFSNLRNIESLDLSYNKLSWK 943
            L C           +     +  L + +      +       L  + +L +  + L + 
Sbjct: 12  GLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFV 71

Query: 944 IPYQLVELNTLAVFSVAYNNLSGKIPERAAQFATFNESSYEGNPFLC 990
            P        L+  ++++N L   +  +  Q  +  E    GNP  C
Sbjct: 72  APDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLHC 117

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 55.5 bits (133), Expect = 5e-08
 Identities = 22/98 (22%), Positives = 29/98 (29%), Gaps = 7/98 (7%)

Query: 577 SIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNL---EGHMFSRNFN 633
                      L  L + N Q    +      G   LR+L +  + L       F     
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFH---F 78

Query: 634 LTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSL 671
              L  L L  N     +     +  SLQ L LS N L
Sbjct: 79  TPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 50.9 bits (121), Expect = 1e-06
 Identities = 20/99 (20%), Positives = 35/99 (35%), Gaps = 4/99 (4%)

Query: 196 SILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLR 255
             L  L    +L  L + + +    +++++   L  L  L +  + +     P A     
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVA-PDAFHFTP 80

Query: 256 KLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFT 294
           +LS L+L    +     L        SL  L LS N   
Sbjct: 81  RLSRLNLSFNAL---ESLSWKTVQGLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 49.7 bits (118), Expect = 3e-06
 Identities = 19/84 (22%), Positives = 30/84 (35%), Gaps = 1/84 (1%)

Query: 757 LMILDLSYNHLNGNIPDRV-DGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNL 815
           L  L +       ++  R   GL +L  L +  + L    P       +L  L+LS N L
Sbjct: 33  LTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNAL 92

Query: 816 HGHIPSCFDNTTLHERYNNGSSLQ 839
                      +L E   +G+ L 
Sbjct: 93  ESLSWKTVQGLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 49.4 bits (117), Expect = 3e-06
 Identities = 14/73 (19%), Positives = 24/73 (32%), Gaps = 8/73 (10%)

Query: 174 PKRLSRLNNLKVFDLSGNLFNNSILS----SLARLSSLRSLLLYDNRLEGSIDVKEFDSL 229
              L    NL    +        +       L  L  LR+L +  + L   +    F   
Sbjct: 24  LHHLPGAENLTELYIEN---QQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFT 79

Query: 230 SNLEELDMSYNEI 242
             L  L++S+N +
Sbjct: 80  PRLSRLNLSFNAL 92

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 49.4 bits (117), Expect = 4e-06
 Identities = 17/96 (17%), Positives = 32/96 (33%), Gaps = 6/96 (6%)

Query: 356 QGLCPLVHLQELHMADNDLRGSLPW-CLANMTSLRILDVSSNQLIGSISSSPLIHLTSIE 414
             L    +L EL++ +      L    L  +  LR L +  +  +  ++         + 
Sbjct: 25  HHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSG-LRFVAPDAFHFTPRLS 83

Query: 415 DLILSDNHFQIPISLEP-LFNHSRLKIFDAENNEIN 449
            L LS N  +   SL         L+      N ++
Sbjct: 84  RLNLSFNALE---SLSWKTVQGLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 47.0 bits (111), Expect = 2e-05
 Identities = 20/95 (21%), Positives = 38/95 (40%), Gaps = 1/95 (1%)

Query: 650 EIPQSLSKCSSLQGLFLSNNSLSGKIPRW-LGNLTVLRHIIMPKNHIEGPIPLEFCQLRI 708
           +    L    +L  L++ N      +    L  L  LR++ + K+ +    P  F     
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPR 81

Query: 709 LQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLH 743
           L  L++S N +          + ++++ LS N LH
Sbjct: 82  LSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 45.9 bits (108), Expect = 5e-05
 Identities = 23/87 (26%), Positives = 33/87 (37%), Gaps = 2/87 (2%)

Query: 537 KQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNN 596
           + L  L +       H+ L     L  L    I  + L    P +F     L  L+LS N
Sbjct: 31  ENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90

Query: 597 QLTGEIPEHLAMGCVSLRSLALSNNNL 623
            L     + +    +SL+ L LS N L
Sbjct: 91  ALESLSWKTVQG--LSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 43.2 bits (101), Expect = 3e-04
 Identities = 20/128 (15%), Positives = 36/128 (28%), Gaps = 19/128 (14%)

Query: 250 ACSGLRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTETVTTTTQGFPHFKS 309
              G   L                L  +    +L  L +      + +            
Sbjct: 6   CPHGSSGLRCTR------DGALDSLHHLPGAENLTELYIENQQHLQHLELRD--LRGLGE 57

Query: 310 LKELYMDDARIAL--NTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQEL 367
           L+ L +  + +      +F        P +  L+LS     N   +L       + LQEL
Sbjct: 58  LRNLTIVKSGLRFVAPDAF-----HFTPRLSRLNLSF----NALESLSWKTVQGLSLQEL 108

Query: 368 HMADNDLR 375
            ++ N L 
Sbjct: 109 VLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 42.8 bits (100), Expect = 4e-04
 Identities = 22/119 (18%), Positives = 31/119 (26%), Gaps = 26/119 (21%)

Query: 699 IPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLM 758
                     L  L I +      L                                 L 
Sbjct: 23  SLHHLPGAENLTELYIENQQHLQHLEL-----------------------RDLRGLGELR 59

Query: 759 ILDLSYNHLNGNIPDRV-DGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLH 816
            L +  + L   +         +LS L L+ N LE  +  +  +   LQ L LS N LH
Sbjct: 60  NLTIVKSGLR-FVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 42.4 bits (99), Expect = 6e-04
 Identities = 19/102 (18%), Positives = 35/102 (34%), Gaps = 16/102 (15%)

Query: 97  FTPFQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILS----SLARL 152
               + L  L + +      +E   L  L  L NL        +  + +      +    
Sbjct: 27  LPGAENLTELYIENQQHLQHLELRDLRGLGELRNL-------TIVKSGLRFVAPDAFHFT 79

Query: 153 SSLTSLDLSANRLKGSIDIKGPKRLSRLNNLKVFDLSGNLFN 194
             L+ L+LS N L+         +  +  +L+   LSGN  +
Sbjct: 80  PRLSRLNLSFNALE-----SLSWKTVQGLSLQELVLSGNPLH 116

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 55.7 bits (133), Expect = 4e-08
 Identities = 33/225 (14%), Positives = 69/225 (30%), Gaps = 36/225 (16%)

Query: 103 LESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILSSLARLSSLTSLDLSA 162
              +D  + +I+   + +    L  +  L  L +      N++        +L SL++ +
Sbjct: 146 WGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIK---GTNNLSIGKKPRPNLKSLEIIS 202

Query: 163 NRLKGS-IDIKGPKRLSRLNNLKVFDLSGNLFNNSILSSLA------RLSSLRSLLLYDN 215
             L  S ++      L  L  L ++    +   +  ++         R  +L+ L + D 
Sbjct: 203 GGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDA 262

Query: 216 RL--EGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGIRDGSKL 273
                      E D L  LE +D+S   +                              L
Sbjct: 263 EEQNVVVEMFLESDILPQLETMDISAGVL-----------------------TDEGARLL 299

Query: 274 LQSMGSFPSLNTLDLSYNNFT-ETVTTTTQGFPHFKSLKELYMDD 317
           L  +     L  +++ YN  + E      +  P    + +    D
Sbjct: 300 LDHVDKIKHLKFINMKYNYLSDEMKKELQKSLPMKIDVSDSQEYD 344

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 46.9 bits (110), Expect = 2e-05
 Identities = 27/180 (15%), Positives = 62/180 (34%), Gaps = 15/180 (8%)

Query: 230 SNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLS 289
               ++D    EI   E       L   +   L  + I+  + L       P+L +L++ 
Sbjct: 144 LFWGDIDFEEQEISWIEQVDLSPVLD--AMPLLNNLKIKGTNNLSIGKKPRPNLKSLEII 201

Query: 290 YNNFTETVTT--TTQGFPHFKSLK-----ELYMDDARIALNTSFLQIIGESMPSIQYLSL 342
                ++V         P+ + L      E Y  D  + +         +  P++++L +
Sbjct: 202 SGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFS--KDRFPNLKWLGI 259

Query: 343 SNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGS----LPWCLANMTSLRILDVSSNQL 398
            ++   N    +      L  L+ + ++   L       L   +  +  L+ +++  N L
Sbjct: 260 VDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYL 319

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 46.1 bits (108), Expect = 4e-05
 Identities = 20/178 (11%), Positives = 51/178 (28%), Gaps = 35/178 (19%)

Query: 507 WLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGD----ILS 562
            +L+    L  L +   +      +       L+ L++        +  +I       L 
Sbjct: 166 PVLDAMPLLNNLKIKGTN---NLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLE 222

Query: 563 RLTVFNISMNALDGSIPSSF------GNMNFLQFLDLSNNQLTGEIPEHLAMGCV--SLR 614
           +L ++    +       + F           L++L + + +    + E      +   L 
Sbjct: 223 KLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLE 282

Query: 615 SLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLS 672
           ++ +S   L                     +     +   + K   L+ + +  N LS
Sbjct: 283 TMDISAGVL--------------------TDEGARLLLDHVDKIKHLKFINMKYNYLS 320

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 52.0 bits (125), Expect = 2e-07
 Identities = 32/135 (23%), Positives = 51/135 (37%), Gaps = 14/135 (10%)

Query: 560 ILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLT---GEIPEHLAMGCVSLRSL 616
           I +   +  +  N +    P  F ++  L+ L L +NQL      + + L      L  L
Sbjct: 38  IPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSL----TQLTVL 93

Query: 617 ALSNN---NLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSG 673
            L  N    L   +F R   L +L  L +  N    E+P+ + + + L  L L  N L  
Sbjct: 94  DLGTNQLTVLPSAVFDR---LVHLKELFMCCNKL-TELPRGIERLTHLTHLALDQNQLKS 149

Query: 674 KIPRWLGNLTVLRHI 688
                   L+ L H 
Sbjct: 150 IPHGAFDRLSSLTHA 164

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 45.8 bits (109), Expect = 3e-05
 Identities = 39/118 (33%), Positives = 54/118 (45%), Gaps = 5/118 (4%)

Query: 710 QILDISDNNISGSLPSCYD-FVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLN 768
           QIL + DN I+   P  +D  + +++++L  N L   L  G F +   L +LDL  N L 
Sbjct: 43  QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLGTNQLT 101

Query: 769 GNIPDRV-DGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDN 825
             +P  V D L  L  L +  N L  E+P  + RL  L  L L  N L       FD 
Sbjct: 102 -VLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDR 157

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 43.5 bits (103), Expect = 1e-04
 Identities = 41/181 (22%), Positives = 54/181 (29%), Gaps = 56/181 (30%)

Query: 759 ILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLC-RLNQLQLLDLSNNNLHG 817
           IL L  N +    P   D L  L  L L  N L   +P+ +   L QL +LDL  N L  
Sbjct: 44  ILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLGTNQL-- 100

Query: 818 HIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGR 877
                             + L            +           FD             
Sbjct: 101 ------------------TVLPS---------AV-----------FDRLVH--------- 113

Query: 878 VPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSY 937
               L  L + CN+L   +P  I  LT +  L L  N L       F  L ++    L  
Sbjct: 114 ----LKELFMCCNKL-TELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFG 168

Query: 938 N 938
           N
Sbjct: 169 N 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 42.0 bits (99), Expect = 5e-04
 Identities = 34/134 (25%), Positives = 49/134 (36%), Gaps = 29/134 (21%)

Query: 92  LNASLFTPFQQLESLDLRDNDIAGCVENEGLERLS-----RLSNLKMLNLVGNLFNNSIL 146
           L   +F     L+ L L  N          L  L       L+ L +L+L  N      L
Sbjct: 55  LEPGVFDSLINLKELYLGSN---------QLGALPVGVFDSLTQLTVLDLGTNQ-----L 100

Query: 147 SSLA-----RLSSLTSLDLSANRLKGSIDIKGPKRLSRLNNLKVFDLSGNLFNNSILSSL 201
           + L      RL  L  L +  N+L   +    P+ + RL +L    L  N   +    + 
Sbjct: 101 TVLPSAVFDRLVHLKELFMCCNKLT-EL----PRGIERLTHLTHLALDQNQLKSIPHGAF 155

Query: 202 ARLSSLRSLLLYDN 215
            RLSSL    L+ N
Sbjct: 156 DRLSSLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 41.6 bits (98), Expect = 7e-04
 Identities = 40/147 (27%), Positives = 58/147 (39%), Gaps = 30/147 (20%)

Query: 156 TSLDLSANRLKGSIDIKGPKRLSRLNNLKVFDLSGNLFNNSILSSL-----ARLSSLRSL 210
             L L  N++        P     L NLK   L  N      L +L       L+ L  L
Sbjct: 43  QILYLHDNQITKL----EPGVFDSLINLKELYLGSNQ-----LGALPVGVFDSLTQLTVL 93

Query: 211 LLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGIRDG 270
            L  N+L   +    FD L +L+EL M  N++   E+P+    L  L++L L        
Sbjct: 94  DLGTNQLT-VLPSAVFDRLVHLKELFMCCNKLT--ELPRGIERLTHLTHLAL-------D 143

Query: 271 SKLLQSM--GSF---PSLNTLDLSYNN 292
              L+S+  G+F    SL    L + N
Sbjct: 144 QNQLKSIPHGAFDRLSSLTHAYL-FGN 169

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 50.4 bits (121), Expect = 5e-07
 Identities = 26/97 (26%), Positives = 41/97 (42%), Gaps = 9/97 (9%)

Query: 577 SIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLE---GHMFSRNFN 633
            +P    N   L  +DLSNN+++  +          L +L LS N L       F     
Sbjct: 45  LVPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDG--- 100

Query: 634 LTNLIWLQLEGNHFVGEIPQ-SLSKCSSLQGLFLSNN 669
           L +L  L L GN  +  +P+ + +  S+L  L +  N
Sbjct: 101 LKSLRLLSLHGND-ISVVPEGAFNDLSALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 44.2 bits (105), Expect = 6e-05
 Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 6/92 (6%)

Query: 736 HLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRV-DGLSQLSYLILAHNNLEGE 794
           +L  N     L      N   L ++DLS N ++  + ++    ++QL  LIL++N L   
Sbjct: 37  YLDGNQF--TLVPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQLLTLILSYNRLRCI 93

Query: 795 VPIQLCRLNQLQLLDLSNNNLHGHIP-SCFDN 825
            P     L  L+LL L  N++   +P   F++
Sbjct: 94  PPRTFDGLKSLRLLSLHGNDISV-VPEGAFND 124

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 43.4 bits (103), Expect = 1e-04
 Identities = 17/57 (29%), Positives = 32/57 (56%), Gaps = 1/57 (1%)

Query: 885 LDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLS 941
           L L  N+    +P ++ N   +  ++LS+N ++     +FSN+  + +L LSYN+L 
Sbjct: 36  LYLDGNQFTL-VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR 91

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 41.5 bits (98), Expect = 5e-04
 Identities = 31/123 (25%), Positives = 50/123 (40%), Gaps = 31/123 (25%)

Query: 104 ESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILSSL-----ARLSSLTSL 158
             L L  N           + LS   +L +++L  N      +S+L     + ++ L +L
Sbjct: 34  TELYLDGNQF-----TLVPKELSNYKHLTLIDLSNNR-----ISTLSNQSFSNMTQLLTL 83

Query: 159 DLSANRLKGSIDIKGPKRL-SRLNNLKVFDLSGNLFNNSILSSL-----ARLSSLRSLLL 212
            LS NRL+  I    P R    L +L++  L GN      +S +       LS+L  L +
Sbjct: 84  ILSYNRLR-CI----PPRTFDGLKSLRLLSLHGND-----ISVVPEGAFNDLSALSHLAI 133

Query: 213 YDN 215
             N
Sbjct: 134 GAN 136

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 50.8 bits (122), Expect = 8e-07
 Identities = 43/152 (28%), Positives = 72/152 (47%), Gaps = 29/152 (19%)

Query: 97  FTPFQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILSSLA---RLS 153
                 ++ +   ++DI      + ++ +  L N++ L L GN      L  ++    L+
Sbjct: 37  QNELNSIDQIIANNSDI------KSVQGIQYLPNVRYLALGGNK-----LHDISALKELT 85

Query: 154 SLTSLDLSANRLKGSIDIKGPKRLSRLNNLKVFDLSGNLFNNSILSSL-----ARLSSLR 208
           +LT L L+ N+L+ S+      +L+ L  L        L  N  L SL      +L++L 
Sbjct: 86  NLTYLILTGNQLQ-SLPNGVFDKLTNLKEL-------VLVENQ-LQSLPDGVFDKLTNLT 136

Query: 209 SLLLYDNRLEGSIDVKEFDSLSNLEELDMSYN 240
            L L  N+L+ S+    FD L+NL ELD+SYN
Sbjct: 137 YLNLAHNQLQ-SLPKGVFDKLTNLTELDLSYN 167

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 44.6 bits (106), Expect = 8e-05
 Identities = 49/238 (20%), Positives = 96/238 (40%), Gaps = 54/238 (22%)

Query: 191 NLFNNSI--LSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEVP 248
           NL   S+    +   L+S+  ++  ++ ++    V+    L N+  L +  N+       
Sbjct: 25  NLKKKSVTDAVTQNELNSIDQIIANNSDIKS---VQGIQYLPNVRYLALGGNK------- 74

Query: 249 QACSGLRKLSYLHLLRVGIRDGSKLLQSMGSFPSLN---TLDLSYNNFTETVTTTTQGFP 305
                                    L  + +   L     L L+ N    ++      F 
Sbjct: 75  -------------------------LHDISALKELTNLTYLILTGNQLQ-SLPNGV--FD 106

Query: 306 HFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLC-PLVHL 364
              +LKEL + + ++    S    + + + ++ YL+L++    N  ++L +G+   L +L
Sbjct: 107 KLTNLKELVLVENQL---QSLPDGVFDKLTNLTYLNLAH----NQLQSLPKGVFDKLTNL 159

Query: 365 QELHMADNDLRGSLPW-CLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDN 421
            EL ++ N L+ SLP      +T L+ L +  NQL  S+       LTS++ + L DN
Sbjct: 160 TELDLSYNQLQ-SLPEGVFDKLTQLKDLRLYQNQL-KSVPDGVFDRLTSLQYIWLHDN 215

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 44.6 bits (106), Expect = 9e-05
 Identities = 52/242 (21%), Positives = 93/242 (38%), Gaps = 69/242 (28%)

Query: 591 LDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFN-LTNLIWLQLEGNHFVG 649
            +L    +T  + ++      S+  +  +N++++     +    L N+ +L L GN    
Sbjct: 24  ANLKKKSVTDAVTQN---ELNSIDQIIANNSDIK---SVQGIQYLPNVRYLALGGNKL-- 75

Query: 650 EIPQSLS---KCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQL 706
                +S   + ++L  L L+ N L   +P                          F +L
Sbjct: 76  ---HDISALKELTNLTYLILTGNQLQ-SLP-----------------------NGVFDKL 108

Query: 707 RILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNH 766
             L+ L + +N +  SLP                        G F     L  L+L++N 
Sbjct: 109 TNLKELVLVENQLQ-SLPD-----------------------GVFDKLTNLTYLNLAHNQ 144

Query: 767 LNGNIPDRV-DGLSQLSYLILAHNNLEGEVPIQLC-RLNQLQLLDLSNNNLHGHIPS-CF 823
           L  ++P  V D L+ L+ L L++N L+  +P  +  +L QL+ L L  N L   +P   F
Sbjct: 145 LQ-SLPKGVFDKLTNLTELDLSYNQLQ-SLPEGVFDKLTQLKDLRLYQNQLKS-VPDGVF 201

Query: 824 DN 825
           D 
Sbjct: 202 DR 203

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 42.7 bits (101), Expect = 3e-04
 Identities = 45/175 (25%), Positives = 69/175 (39%), Gaps = 11/175 (6%)

Query: 656 SKCS-SLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDI 714
                      L   S++  + +    L  +  II   + I+         L  ++ L +
Sbjct: 15  DDAFAETIKANLKKKSVTDAVTQN--ELNSIDQIIANNSDIKSVQG--IQYLPNVRYLAL 70

Query: 715 SDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDR 774
             N +   + +  +   +  + L+ N L   L  G F     L  L L  N L  ++PD 
Sbjct: 71  GGNKLH-DISALKELTNLTYLILTGNQL-QSLPNGVFDKLTNLKELVLVENQLQ-SLPDG 127

Query: 775 V-DGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPS-CFDNTT 827
           V D L+ L+YL LAHN L+        +L  L  LDLS N L   +P   FD  T
Sbjct: 128 VFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQS-LPEGVFDKLT 181

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 50.5 bits (121), Expect = 1e-06
 Identities = 43/167 (25%), Positives = 71/167 (42%), Gaps = 21/167 (12%)

Query: 132 KMLNLVGNLFNNSILSSLARLSSLTSLDLSANRLKGSIDIKGPKRLSRLNNLKVFDLSGN 191
           + L+L          ++   L+ LT L+L  N+L+ ++       L+ L  L        
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTL-------G 89

Query: 192 LFNNSILSSL-----ARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFE 246
           L NN  L+SL       L+ L  L L  N+L+ S+    FD L+ L+EL ++ N++    
Sbjct: 90  LANNQ-LASLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQ--S 145

Query: 247 VPQ-ACSGLRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNN 292
           +P  A   L  L  L L    ++  S    +      L T+ L + N
Sbjct: 146 IPAGAFDKLTNLQTLSLSTNQLQ--SVPHGAFDRLGKLQTITL-FGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 48.9 bits (117), Expect = 3e-06
 Identities = 38/137 (27%), Positives = 54/137 (39%), Gaps = 8/137 (5%)

Query: 693 NHIEGPIPLEFCQLRILQILDISDNNISGSLPS--CYDFVCIEQVHLSKNMLHGQLKEGT 750
             +       F  L  L  L++  N +  +L +    D   +  + L+ N L   L  G 
Sbjct: 45  TGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGLANNQLA-SLPLGV 102

Query: 751 FFNCLTLMILDLSYNHLNGNIPDRV-DGLSQLSYLILAHNNLEGEVPIQLC-RLNQLQLL 808
           F +   L  L L  N L   +P  V D L++L  L L  N L+  +P     +L  LQ L
Sbjct: 103 FDHLTQLDKLYLGGNQLKS-LPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTL 160

Query: 809 DLSNNNLHGHIPSCFDN 825
            LS N L       FD 
Sbjct: 161 SLSTNQLQSVPHGAFDR 177

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 45.1 bits (107), Expect = 6e-05
 Identities = 41/157 (26%), Positives = 65/157 (41%), Gaps = 23/157 (14%)

Query: 572 NALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNN---NLEGHMF 628
             L     ++F  +  L +L+L  NQL   +   +      L +L L+NN   +L   +F
Sbjct: 45  TGLATLSDATFRGLTKLTWLNLDYNQLQT-LSAGVFDDLTELGTLGLANNQLASLPLGVF 103

Query: 629 SRNFNLTNLIWLQLEGNHFVGEIPQSLS-----KCSSLQGLFLSNNSLSGKIPRWLG--- 680
                LT L  L L GN       +SL      + + L+ L L+ N L   IP   G   
Sbjct: 104 DH---LTQLDKLYLGGNQL-----KSLPSGVFDRLTKLKELRLNTNQLQ-SIPA--GAFD 152

Query: 681 NLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDN 717
            LT L+ + +  N ++      F +L  LQ + +  N
Sbjct: 153 KLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 44.3 bits (105), Expect = 9e-05
 Identities = 48/201 (23%), Positives = 64/201 (31%), Gaps = 50/201 (24%)

Query: 614 RSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSG 673
             L L +  L     +    LT L WL L+ N               LQ       +LS 
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYN--------------QLQ-------TLSA 76

Query: 674 KIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIE 733
            +   L  L  L    +  N +       F  L  L  L +  N +  SLP         
Sbjct: 77  GVFDDLTELGTLG---LANNQLASLPLGVFDHLTQLDKLYLGGNQLK-SLP--------- 123

Query: 734 QVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRV-DGLSQLSYLILAHNNLE 792
                          G F     L  L L+ N L  +IP    D L+ L  L L+ N L+
Sbjct: 124 --------------SGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQ 168

Query: 793 GEVPIQLCRLNQLQLLDLSNN 813
                   RL +LQ + L  N
Sbjct: 169 SVPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 43.5 bits (103), Expect = 2e-04
 Identities = 50/184 (27%), Positives = 69/184 (37%), Gaps = 39/184 (21%)

Query: 760 LDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHI 819
           LDL    L         GL++L++L L +N L+         L +L  L L+NN L    
Sbjct: 40  LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLP 99

Query: 820 PSCFDNTT----LHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQ 875
              FD+ T    L+   N   SL           G+           FD  TK       
Sbjct: 100 LGVFDHLTQLDKLYLGGNQLKSLPS---------GV-----------FDRLTK------- 132

Query: 876 GRVPSLLSGLDLSCNRLIGHIPPQI-GNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLD 934
                 L  L L+ N+L   IP      LT +QTL+LS N L       F  L  ++++ 
Sbjct: 133 ------LKELRLNTNQL-QSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTIT 185

Query: 935 LSYN 938
           L  N
Sbjct: 186 LFGN 189

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 47.7 bits (114), Expect = 5e-06
 Identities = 39/138 (28%), Positives = 56/138 (40%), Gaps = 19/138 (13%)

Query: 560 ILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALS 619
           I ++ T  ++  N+L       F  +  L  L L  N+L   +P  +     SL  L LS
Sbjct: 26  IPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLS 84

Query: 620 NN---NLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLS-----KCSSLQGLFLSNNSL 671
            N   +L   +F +   LT L  L L  N       QSL      K + L+ L L  N L
Sbjct: 85  TNQLQSLPNGVFDK---LTQLKELALNTNQL-----QSLPDGVFDKLTQLKDLRLYQNQL 136

Query: 672 SGKIPR-WLGNLTVLRHI 688
              +P      LT L++I
Sbjct: 137 KS-VPDGVFDRLTSLQYI 153

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 42.4 bits (100), Expect = 3e-04
 Identities = 39/141 (27%), Positives = 62/141 (43%), Gaps = 26/141 (18%)

Query: 132 KMLNLVGNLFNNSILSSLARLSSLTSLDLSANRLK----GSIDIKGPKRLSRLNNLKVFD 187
             L+L  N   +        L+SLT L L  N+L+    G  +        +L +L   +
Sbjct: 31  TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFN--------KLTSLTYLN 82

Query: 188 LSGNLFNNSILSSLA-----RLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEI 242
           LS N      L SL      +L+ L+ L L  N+L+ S+    FD L+ L++L +  N++
Sbjct: 83  LSTNQ-----LQSLPNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQLKDLRLYQNQL 136

Query: 243 DNFEVPQ-ACSGLRKLSYLHL 262
            +  VP      L  L Y+ L
Sbjct: 137 KS--VPDGVFDRLTSLQYIWL 155

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 4/92 (4%)

Query: 736 HLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRV-DGLSQLSYLILAHNNLEGE 794
            L+ N L     +G F     L+ L+L  N L   I     +G S +  L L  N ++ E
Sbjct: 35  LLNDNELGRISSDGLFGRLPHLVKLELKRNQLT-GIEPNAFEGASHIQELQLGENKIK-E 92

Query: 795 VPIQLC-RLNQLQLLDLSNNNLHGHIPSCFDN 825
           +  ++   L+QL+ L+L +N +   +P  F++
Sbjct: 93  ISNKMFLGLHQLKTLNLYDNQISCVMPGSFEH 124

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 29/150 (19%), Positives = 53/150 (35%), Gaps = 30/150 (20%)

Query: 589 QFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNN---NLEGHMFSRNFNLTNLIWLQLEGN 645
             L L++N+L     + L      L  L L  N    +E + F      +++  LQL  N
Sbjct: 32  TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEG---ASHIQELQLGEN 88

Query: 646 HFVGEIPQSLS-----KCSSLQGLFLSNNSLSGKIPRWLG---NLTVLRHIIMPKNHIEG 697
                  + +S         L+ L L +N +S  +    G   +L  L  + +  N    
Sbjct: 89  KI-----KEISNKMFLGLHQLKTLNLYDNQISC-VMP--GSFEHLNSLTSLNLASN---- 136

Query: 698 PIPLEFCQLRILQILD-ISDNNISGSLPSC 726
             P   C   +    + +   +++G    C
Sbjct: 137 --PFN-CNCHLAWFAEWLRKKSLNGGAARC 163

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 44.2 bits (105), Expect = 5e-05
 Identities = 32/142 (22%), Positives = 56/142 (39%), Gaps = 42/142 (29%)

Query: 104 ESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILSSL-----ARLSSLTSL 158
             L L DN++   + ++GL    RL +L  L L  N      L+ +        S +  L
Sbjct: 32  TELLLNDNELGR-ISSDGL--FGRLPHLVKLELKRN-----QLTGIEPNAFEGASHIQEL 83

Query: 159 DLSANRLKGSIDIKGPKRLSRLNNLKVFDLSGNLFNNSILSSLARLSSLRSLLLYDNRLE 218
            L  N++K  I      +        +F                 L  L++L LYDN++ 
Sbjct: 84  QLGENKIK-EI----SNK--------MFL---------------GLHQLKTLNLYDNQIS 115

Query: 219 GSIDVKEFDSLSNLEELDMSYN 240
             +    F+ L++L  L+++ N
Sbjct: 116 -CVMPGSFEHLNSLTSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 43.5 bits (103), Expect = 9e-05
 Identities = 27/92 (29%), Positives = 39/92 (42%), Gaps = 9/92 (9%)

Query: 582 FGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLE---GHMFSRNFNLTNLI 638
           FG +  L  L+L  NQLT  I  +   G   ++ L L  N ++     MF     L  L 
Sbjct: 50  FGRLPHLVKLELKRNQLT-GIEPNAFEGASHIQELQLGENKIKEISNKMFLG---LHQLK 105

Query: 639 WLQLEGNHFVGEIPQ-SLSKCSSLQGLFLSNN 669
            L L  N  +  +   S    +SL  L L++N
Sbjct: 106 TLNLYDNQ-ISCVMPGSFEHLNSLTSLNLASN 136

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176

 Score = 45.2 bits (107), Expect = 2e-05
 Identities = 19/122 (15%), Positives = 44/122 (36%), Gaps = 14/122 (11%)

Query: 74  GRVVVLDLSQTHRGEYWYLNASLFTPFQQLESLDLRDNDIAGCVENEGLERLSRLSNLKM 133
             V      +  +               +++++D  D+ I     + G + +  L  ++ 
Sbjct: 36  AMVRYHGQQRWQKDYNHLPT--GPLDKYKIQAIDATDSCI----MSIGFDHMEGLQYVEK 89

Query: 134 LNLVG-NLFNNSILSSLARLS----SLTSLDLSANRLKGSIDIKGPKRLSRLNNLKVFDL 188
           + L   +   +  L  L++L     S+  +++ +     ++  KG   L    NLK   L
Sbjct: 90  IRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCG---NVTDKGIIALHHFRNLKYLFL 146

Query: 189 SG 190
           S 
Sbjct: 147 SD 148

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	1077
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	8e-19
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-18
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	8e-14
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-13
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-09
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-09
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-09
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	4e-09
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-08
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	7e-07
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-05
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-18
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-14
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	5e-11
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-08
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	6e-07
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-06
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	8e-04
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-17
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	6e-13
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-08
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	5e-08
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-04
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	5e-04
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-17
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-16
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	8e-12
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	5e-10
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	5e-09
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-07
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-05
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-04
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-04
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	0.004
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-11
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-11
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	6e-08
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	5e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	5e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	6e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.002
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.002
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-09
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	3e-08
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	6e-08
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	1e-06
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	5e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	0.002
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	3e-09
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	1e-07
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	2e-05
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	2e-05
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	2e-05
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	7e-05
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	8e-05
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	0.001
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	0.001
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	0.004
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	2e-07
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	5e-06
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	5e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	4e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	5e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	5e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	6e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	8e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	7e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	4e-07
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-06
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	5e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	5e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	3e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	5e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.002
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.002
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.003
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.003
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	7e-07
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	2e-06
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	2e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	3e-04
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	7e-07
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	6e-05
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	2e-06
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	6e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	9e-04
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	5e-06
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	5e-05
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	2e-04
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	8e-06
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	1e-04
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	0.001
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	7e-05
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	0.004
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	4e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	5e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	7e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	8e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.001
d1m9la_	198	c.10.3.1 (A:) Outer arm dynein light chain 1 {Gree	0.002

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 87.7 bits (216), Expect = 8e-19
 Identities = 59/385 (15%), Positives = 113/385 (29%), Gaps = 41/385 (10%)

Query: 591 LDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGE 650
             L    +T  + +        + +L      ++         L NL  +    N     
Sbjct: 27  TVLGKTNVTDTVSQ---TDLDQVTTLQADRLGIKS--IDGVEYLNNLTQINFSNNQLTDI 81

Query: 651 IPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQ 710
            P  L   + L  + ++NN ++   P           +   +     P+       R+  
Sbjct: 82  TP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLEL 139

Query: 711 ILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHG-------------QLKEGTFFNCLTL 757
             +   +  + S  +    +           L                           L
Sbjct: 140 SSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNL 199

Query: 758 MILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHG 817
             L  + N ++   P  +   + L  L L  N L+      L  L  L  LDL+NN +  
Sbjct: 200 ESLIATNNQISDITPLGIL--TNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISN 255

Query: 818 HIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGR 877
             P               + L   +     +  +        L + +     +       
Sbjct: 256 LAPLS-----------GLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPIS 304

Query: 878 VPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSY 937
               L+ L L  N +    P  + +LTK+Q L  ++N ++    S+ +NL NI  L   +
Sbjct: 305 NLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSDV--SSLANLTNINWLSAGH 360

Query: 938 NKLSWKIPYQLVELNTLAVFSVAYN 962
           N++S   P  L  L  +    +   
Sbjct: 361 NQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 85.8 bits (211), Expect = 3e-18
 Identities = 75/414 (18%), Positives = 135/414 (32%), Gaps = 64/414 (15%)

Query: 537 KQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNN 596
            +     + K N    +     D ++ L    + + ++DG        +N L  ++ SNN
Sbjct: 22  AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDG-----VEYLNNLTQINFSNN 76

Query: 597 QLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLS 656
           QLT   P       V +        ++       N     L   Q+     +  +     
Sbjct: 77  QLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNR 136

Query: 657 KCSSLQGLFL------------SNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFC 704
              S   +               +        + L NLT L  + +  N +         
Sbjct: 137 LELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISV--LA 194

Query: 705 QLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSY 764
           +L  L+ L  ++N IS   P       ++++ L+ N L      GT  +   L  LDL+ 
Sbjct: 195 KLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKD---IGTLASLTNLTDLDLAN 250

Query: 765 NHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFD 824
           N ++   P  + GL++L+ L L  N +    P+          L+ +       I +  +
Sbjct: 251 NQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKN 308

Query: 825 NTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSG 884
            T L   +NN S + P  +                                    + L  
Sbjct: 309 LTYLTLYFNNISDISPVSS-----------------------------------LTKLQR 333

Query: 885 LDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYN 938
           L  + N++       + NLT I  L+  HN ++   P   +NL  I  L L+  
Sbjct: 334 LFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 72.3 bits (176), Expect = 8e-14
 Identities = 64/401 (15%), Positives = 138/401 (34%), Gaps = 42/401 (10%)

Query: 227 DSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNTL 286
            +L+   +  +    + +     + + L +++ L   R+GI+     +  +    +L  +
Sbjct: 19  TALAEKMKTVLGKTNVTD---TVSQTDLDQVTTLQADRLGIKS----IDGVEYLNNLTQI 71

Query: 287 DLSYNNFTETVTTTTQGFPHFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSS 346
           + S N  T+          +   L ++ M++ +IA  T    +   +  ++    +++  
Sbjct: 72  NFSNNQLTDI-----TPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDID 126

Query: 347 VSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSP 406
              N   L++       + ++                 +T L+ L   +      ISS+ 
Sbjct: 127 PLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNK 186

Query: 407 LIH------LTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTT 460
           +        LT++E LI ++N       + PL   + L       N++            
Sbjct: 187 VSDISVLAKLTNLESLIATNNQIS---DITPLGILTNLDELSLNGNQL--------KDIG 235

Query: 461 PNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSL 520
               L +L       + I+    L     L  ++L   +++   P   L   T L     
Sbjct: 236 TLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNEN 295

Query: 521 VNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPS 580
                      PI + K L  L +  NN     P+     L++L     + N +  S  S
Sbjct: 296 QL-----EDISPISNLKNLTYLTLYFNNISDISPVSS---LTKLQRLFFANNKV--SDVS 345

Query: 581 SFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNN 621
           S  N+  + +L   +NQ++   P         +  L L++ 
Sbjct: 346 SLANLTNINWLSAGHNQISDLTPLA---NLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 70.4 bits (171), Expect = 3e-13
 Identities = 61/375 (16%), Positives = 137/375 (36%), Gaps = 30/375 (8%)

Query: 200 SLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSY 259
           S   L  + +L      ++    +   + L+NL +++ S N++ +    +  + L  +  
Sbjct: 39  SQTDLDQVTTLQADRLGIK---SIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILM 95

Query: 260 LHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDAR 319
            +     I   +    +  +  +L    ++  +  + +T   +      ++ ++      
Sbjct: 96  NNNQIADITPLAN--LTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGL 153

Query: 320 IALNTSFLQIIGESMPSIQYLSLSNSSVSN-NSRTLDQGLCPLVHLQELHMADNDLRGSL 378
            +L           +  +  L+       + N  +    L  L +L+ L   +N +    
Sbjct: 154 TSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDIT 213

Query: 379 PWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRL 438
           P     +T+L  L ++ NQL        L  LT++ DL L++N      +L PL   ++L
Sbjct: 214 PLG--ILTNLDELSLNGNQLKDI---GTLASLTNLTDLDLANNQIS---NLAPLSGLTKL 265

Query: 439 KIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHI 498
                  N+I+           P   L +L       + +     + N  +L Y+ L   
Sbjct: 266 TELKLGANQISNIS--------PLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFN 317

Query: 499 KMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIG 558
            +++  P   + + TKL++L   N+ +       + +   +  L    N      PL   
Sbjct: 318 NISDISP---VSSLTKLQRLFFANNKVSDVS--SLANLTNINWLSAGHNQISDLTPLAN- 371

Query: 559 DILSRLTVFNISMNA 573
             L+R+T   ++  A
Sbjct: 372 --LTRITQLGLNDQA 384

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 59.2 bits (142), Expect = 1e-09
 Identities = 81/389 (20%), Positives = 152/389 (39%), Gaps = 31/389 (7%)

Query: 132 KMLNLVGNLFNNSILSSLARLSSLTSLDLSANRLKGSIDIKGPKRLSRLNNLKVFDLSGN 191
           + +  V    N +   S   L  +T+L      +K    I G   +  LNNL   + S N
Sbjct: 23  EKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIK---SIDG---VEYLNNLTQINFSNN 76

Query: 192 LFNNSILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQAC 251
              +  ++ L  L+ L  +L+ +N++     +    +L+ L   +    +ID  +     
Sbjct: 77  QLTD--ITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNL 134

Query: 252 SGLRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTETVTTTTQGFPHFKSLK 311
           + L   S        +   + L Q        +   L+     E +  ++        L 
Sbjct: 135 NRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLA 194

Query: 312 ELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMAD 371
           +L   ++ IA N     I     P     +L   S++ N       L  L +L +L +A+
Sbjct: 195 KLTNLESLIATNNQISDIT----PLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLAN 250

Query: 372 NDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEP 431
           N +    P     +T L  L + +NQ+       PL  LT++ +L L++N  +    +  
Sbjct: 251 NQISNLAPLS--GLTKLTELKLGANQISNIS---PLAGLTALTNLELNENQLEDISPISN 305

Query: 432 LFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLE 491
           L N   L       N I+ +I    SLT    +LQ L  ++   + ++    L N  ++ 
Sbjct: 306 LKN---LTYLTLYFNNIS-DISPVSSLT----KLQRLFFAN---NKVSDVSSLANLTNIN 354

Query: 492 YVRLSHIKMNEEFPNWLLENNTKLRQLSL 520
           ++   H ++++  P   L N T++ QL L
Sbjct: 355 WLSAGHNQISDLTP---LANLTRITQLGL 380

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 58.5 bits (140), Expect = 2e-09
 Identities = 49/221 (22%), Positives = 88/221 (39%), Gaps = 35/221 (15%)

Query: 61  CCQWERVSCNNTMGRVVVLDLSQTHRGEYWYLNASLFTPFQ---QLESLDLRDNDIAGCV 117
             +   +S N      V+  L+            S  TP      L+ L L  N +    
Sbjct: 176 TLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQL---- 231

Query: 118 ENEGLERLSRLSNLKMLNLVGNLFNNSILSSLARLSSLTSLDLSANRLKGSIDIKGPKRL 177
             + +  L+ L+NL  L+L  N  +N  L+ L+ L+ LT L L AN++     + G   L
Sbjct: 232 --KDIGTLASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISPLAGLTAL 287

Query: 178 S----------------RLNNLKVFDLSGNLFNNSILSSLARLSSLRSLLLYDNRLEGSI 221
           +                 L NL    L  N  ++  +S ++ L+ L+ L   +N++    
Sbjct: 288 TNLELNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQRLFFANNKVSD-- 343

Query: 222 DVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHL 262
            V    +L+N+  L   +N+I +       + L +++ L L
Sbjct: 344 -VSSLANLTNINWLSAGHNQISDLT---PLANLTRITQLGL 380

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 58.1 bits (139), Expect = 2e-09
 Identities = 49/257 (19%), Positives = 101/257 (39%), Gaps = 25/257 (9%)

Query: 61  CCQWERVSCNNTMGRVVVLDLSQTHRGEYWYLNASLFTPFQQLESLDLRDNDIAGCVENE 120
                    +       +  L+     E   ++++  +    L  L   ++ IA   +  
Sbjct: 151 SGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQIS 210

Query: 121 GLERLSRLSNLKMLNLVGNLFNNSILSSLARLSSLTSLDLSANRLKGSIDIKGPKRLSRL 180
            +  L  L+NL  L+L GN   +  + +LA L++LT LDL+ N++     + G  +L+ L
Sbjct: 211 DITPLGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAPLSGLTKLTEL 268

Query: 181 NNLKVFDLSGNLFNNSILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYN 240
                          + +S+++ L+ L +L   +       D+    +L NL  L + +N
Sbjct: 269 K-----------LGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFN 317

Query: 241 EIDNFEVPQACSGLRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTETVTTT 300
            I +       S L KL  L      + D    + S+ +  ++N L   +N  ++     
Sbjct: 318 NISDIS---PVSSLTKLQRLFFANNKVSD----VSSLANLTNINWLSAGHNQISDLT--- 367

Query: 301 TQGFPHFKSLKELYMDD 317
                +   + +L ++D
Sbjct: 368 --PLANLTRITQLGLND 382

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 57.3 bits (137), Expect = 4e-09
 Identities = 62/389 (15%), Positives = 125/389 (32%), Gaps = 68/389 (17%)

Query: 100 FQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILSSLARLSSLTSLD 159
             +     L   ++   V        + L  +  L        +  +  +  L++LT ++
Sbjct: 21  LAEKMKTVLGKTNVTDTVS------QTDLDQVTTLQADRLGIKS--IDGVEYLNNLTQIN 72

Query: 160 LSANRLKGSIDIKGPKRLSRLNNLKVFDLSGNLFNNSILSSLARLSSLRSLLLYDNRLEG 219
            S N+L     +K   +L  +              N    +   L + +   +   +   
Sbjct: 73  FSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLT 132

Query: 220 SIDVKEFDS-----------------------------LSNLEELDMSYNEIDNFEVPQA 250
           +++  E  S                             L+NL  L+      +       
Sbjct: 133 NLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISV 192

Query: 251 CSGLRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTETVTTTTQGFPHFKSL 310
            + L  L  L      I D    +  +G   +L+ L L+ N   +             +L
Sbjct: 193 LAKLTNLESLIATNNQISD----ITPLGILTNLDELSLNGNQLKD-----IGTLASLTNL 243

Query: 311 KELYMDDARIA-------------LNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQG 357
            +L + + +I+             L     QI   S P     +L+N  ++ N       
Sbjct: 244 TDLDLANNQISNLAPLSGLTKLTELKLGANQISNIS-PLAGLTALTNLELNENQLEDISP 302

Query: 358 LCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLI 417
           +  L +L  L +  N++    P  ++++T L+ L  ++N++      S L +LT+I  L 
Sbjct: 303 ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD---VSSLANLTNINWLS 357

Query: 418 LSDNHFQIPISLEPLFNHSRLKIFDAENN 446
              N       L PL N +R+      + 
Sbjct: 358 AGHNQIS---DLTPLANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 54.6 bits (130), Expect = 3e-08
 Identities = 32/158 (20%), Positives = 60/158 (37%), Gaps = 25/158 (15%)

Query: 97  FTPFQQLESLDLRDNDIAGCVENEGLERLSRLS----NLKMLNLVGNLFNNSILSS---- 148
                 L  LDL +N I+      GL +L+ L      +  ++ +  L   + L      
Sbjct: 237 LASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQ 296

Query: 149 ------LARLSSLTSLDLSANRLKGSIDIKGPKRLSRLNNLKVFDLSGNLFNNSILSSLA 202
                 ++ L +LT L L  N +     +      S L  L+    + N    S +SSLA
Sbjct: 297 LEDISPISNLKNLTYLTLYFNNISDISPV------SSLTKLQRLFFANNKV--SDVSSLA 348

Query: 203 RLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYN 240
            L+++  L    N++          +L+ + +L ++  
Sbjct: 349 NLTNINWLSAGHNQISDLT---PLANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 50.4 bits (119), Expect = 7e-07
 Identities = 22/102 (21%), Positives = 39/102 (38%), Gaps = 14/102 (13%)

Query: 90  WYLNASLFTPFQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILSSL 149
              + S  +  + L  L L  N+I        +  +S L+ L+ L    N    S +SSL
Sbjct: 296 QLEDISPISNLKNLTYLTLYFNNI------SDISPVSSLTKLQRLFFANNKV--SDVSSL 347

Query: 150 ARLSSLTSLDLSANRLKGSIDIKGPKRLSRLNNLKVFDLSGN 191
           A L+++  L    N++           L+ L  +    L+  
Sbjct: 348 ANLTNINWLSAGHNQISDLTP------LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 46.5 bits (109), Expect = 1e-05
 Identities = 51/338 (15%), Positives = 104/338 (30%), Gaps = 34/338 (10%)

Query: 633 NLTNLIWLQLEGNHFVGEIPQS-LSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMP 691
            L   +   L   +    + Q+ L + ++LQ   L   S+ G     +  L  L  I   
Sbjct: 20  ALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDG-----VEYLNNLTQINFS 74

Query: 692 KNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTF 751
            N +    P     L  L  + +++N          D   +  +     +     +    
Sbjct: 75  NNQLTDITP--LKNLTKLVDILMNNNQ-------IADITPLANLTNLTGLTLFNNQITDI 125

Query: 752 FNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLS 811
                L  L+      N                +   N +    P+      +   +  +
Sbjct: 126 DPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSN 185

Query: 812 NNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSIT 871
             +    +    +  +L    N  S + P                   L+        + 
Sbjct: 186 KVSDISVLAKLTNLESLIATNNQISDITPL-------------GILTNLDELSLNGNQLK 232

Query: 872 YTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIE 931
                   + L+ LDL+ N++    P  +  LTK+  L L  N ++   P   + L  + 
Sbjct: 233 DIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALT 288

Query: 932 SLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIP 969
           +L+L+ N+   +    +  L  L   ++ +NN+S   P
Sbjct: 289 NLELNENQ--LEDISPISNLKNLTYLTLYFNNISDISP 324

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 85.5 bits (210), Expect = 1e-18
 Identities = 49/270 (18%), Positives = 94/270 (34%), Gaps = 15/270 (5%)

Query: 530 RLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQ 589
           ++P        LLD+  N        +  + L  L    +  N +    P +F  +  L+
Sbjct: 24  KVPKDLPPDTALLDLQNNKITEIKDGDFKN-LKNLHTLILINNKISKISPGAFAPLVKLE 82

Query: 590 FLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVG 649
            L LS NQL  E+PE +      LR        +   +F+   N   ++ L        G
Sbjct: 83  RLYLSKNQLK-ELPEKMPKTLQELRVHENEITKVRKSVFN-GLNQMIVVELGTNPLKSSG 140

Query: 650 EIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRIL 709
               +      L  + +++ +++        +LT L    +  N I          L  L
Sbjct: 141 IENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELH---LDGNKITKVDAASLKGLNNL 197

Query: 710 QILDISDNNISGSLPS-CYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLN 768
             L +S N+IS        +   + ++HL+ N L          +   + ++ L  N+++
Sbjct: 198 AKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGG--LADHKYIQVVYLHNNNIS 255

Query: 769 G------NIPDRVDGLSQLSYLILAHNNLE 792
                    P      +  S + L  N ++
Sbjct: 256 AIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 285

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 73.1 bits (178), Expect = 2e-14
 Identities = 56/275 (20%), Positives = 94/275 (34%), Gaps = 31/275 (11%)

Query: 588 LQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHF 647
           L+ +  S+  L  ++P+ L         L L NN +         NL NL  L L  N  
Sbjct: 12  LRVVQCSDLGLE-KVPKDLP---PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI 67

Query: 648 VGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIE----------- 696
               P + +    L+ L+LS N L     +    L  LR        +            
Sbjct: 68  SKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMI 127

Query: 697 ------------GPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHG 744
                       G     F  ++ L  + I+D NI+           + ++HL  N +  
Sbjct: 128 VVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGL--PPSLTELHLDGNKITK 185

Query: 745 QLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQ 804
                +      L  L LS+N ++      +     L  L L +N L  +VP  L     
Sbjct: 186 VD-AASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKY 243

Query: 805 LQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQ 839
           +Q++ L NNN+     + F     + +  + S + 
Sbjct: 244 IQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVS 278

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 62.7 bits (151), Expect = 5e-11
 Identities = 41/209 (19%), Positives = 68/209 (32%), Gaps = 9/209 (4%)

Query: 756 TLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNL 815
              +LDL  N +          L  L  LIL +N +    P     L +L+ L LS N L
Sbjct: 32  DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL 91

Query: 816 HGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQ 875
                           + N  +         +   + V+     L+S      +     +
Sbjct: 92  KELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKK 151

Query: 876 GRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDL 935
                 LS + ++   +   IP   G    +  L+L  N +     ++   L N+  L L
Sbjct: 152 ------LSYIRIADTNI-TTIPQ--GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGL 202

Query: 936 SYNKLSWKIPYQLVELNTLAVFSVAYNNL 964
           S+N +S      L     L    +  N L
Sbjct: 203 SFNSISAVDNGSLANTPHLRELHLNNNKL 231

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 55.4 bits (132), Expect = 1e-08
 Identities = 45/296 (15%), Positives = 88/296 (29%), Gaps = 47/296 (15%)

Query: 335 PSIQYLSLSNSSVSNNSRTLDQG-LCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDV 393
           P    L L N    N    +  G    L +L  L + +N +    P   A +  L  L +
Sbjct: 31  PDTALLDLQN----NKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 86

Query: 394 SSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEII 453
           S NQL       P     ++++L + +N                               +
Sbjct: 87  SKNQL----KELPEKMPKTLQELRVHENEIT---------------------------KV 115

Query: 454 ESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNT 513
                   N  +   L ++  +              L Y+R++   +             
Sbjct: 116 RKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP----P 171

Query: 514 KLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNA 573
            L +L L  + +       +     L  L +S N+               L   +++ N 
Sbjct: 172 SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDN-GSLANTPHLRELHLNNNK 230

Query: 574 LDGSIPSSFGNMNFLQFLDLSNNQLTG-----EIPEHLAMGCVSLRSLALSNNNLE 624
           L   +P    +  ++Q + L NN ++        P        S   ++L +N ++
Sbjct: 231 LV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 285

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 50.4 bits (119), Expect = 6e-07
 Identities = 61/344 (17%), Positives = 102/344 (29%), Gaps = 76/344 (22%)

Query: 62  CQWERVSCNNTMGRVVVLDLSQTHRGEYWYLNASLFTPFQQLESLDLRDNDIAGCVENEG 121
           C    V C++     V  DL                        LDL++N I    + + 
Sbjct: 10  CHLRVVQCSDLGLEKVPKDLPPD------------------TALLDLQNNKITEIKDGD- 50

Query: 122 LERLSRLSNLKMLNLVGNLFNNSILSSLARLSSLTSLDLSANRLKGSIDIKGPKRLSRLN 181
                 L NL  L L+ N  +     + A L  L  L LS N+LK   +           
Sbjct: 51  ---FKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPE-------KMPK 100

Query: 182 NLKVFDLSGNLFNNSILSSLARLSSLRSLLLYDNRLEGS-IDVKEFDSLSNLEELDMSYN 240
            L+   +  N       S    L+ +  + L  N L+ S I+   F  +  L  + ++  
Sbjct: 101 TLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT 160

Query: 241 EIDNFEVPQACSGLRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTETVTTT 300
            I                                   G  PSL  L L  N        T
Sbjct: 161 NITTI------------------------------PQGLPPSLTELHLDGNKI------T 184

Query: 301 TQGFPHFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCP 360
                  K L  L          ++       + P ++ L L+N+ +         GL  
Sbjct: 185 KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVP----GGLAD 240

Query: 361 LVHLQELHMADNDLRG------SLPWCLANMTSLRILDVSSNQL 398
             ++Q +++ +N++          P       S   + + SN +
Sbjct: 241 HKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV 284

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 48.9 bits (115), Expect = 2e-06
 Identities = 23/87 (26%), Positives = 35/87 (40%)

Query: 878 VPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSY 937
           +P   + LDL  N++         NL  + TL L +N ++   P  F+ L  +E L LS 
Sbjct: 29  LPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 88

Query: 938 NKLSWKIPYQLVELNTLAVFSVAYNNL 964
           N+L          L  L V       +
Sbjct: 89  NQLKELPEKMPKTLQELRVHENEITKV 115

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 40.4 bits (93), Expect = 8e-04
 Identities = 49/269 (18%), Positives = 93/269 (34%), Gaps = 19/269 (7%)

Query: 230 SNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLS 289
            +   LD+  N+I   +       L+ L  L L+   I        +      L  L LS
Sbjct: 31  PDTALLDLQNNKITEIK-DGDFKNLKNLHTLILINNKIS--KISPGAFAPLVKLERLYLS 87

Query: 290 YNNFTETVTTTTQGFPHFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSN 349
            N   E            K+L+EL + +  I   T   + +   +  +  + L  + +  
Sbjct: 88  KNQLKELPEK------MPKTLQELRVHENEI---TKVRKSVFNGLNQMIVVELGTNPL-K 137

Query: 350 NSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIH 409
           +S   +     +  L  + +AD ++  ++P  L    SL  L +  N++    ++S L  
Sbjct: 138 SSGIENGAFQGMKKLSYIRIADTNIT-TIPQGL--PPSLTELHLDGNKITKVDAAS-LKG 193

Query: 410 LTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTT-PNFQLQSL 468
           L ++  L LS N      +   L N   L+     NN++                 L + 
Sbjct: 194 LNNLAKLGLSFNSISAVDN-GSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNN 252

Query: 469 LLSSGYRDGITFPKFLYNQHDLEYVRLSH 497
            +S+   +    P +   +     V L  
Sbjct: 253 NISAIGSNDFCPPGYNTKKASYSGVSLFS 281

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.2 bits (201), Expect = 1e-17
 Identities = 48/259 (18%), Positives = 79/259 (30%), Gaps = 4/259 (1%)

Query: 559 DILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLAL 618
            I +      +  N +     +SF     L  L L +N L            +  +    
Sbjct: 29  GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLS 88

Query: 619 SNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRW 678
            N  L     +    L  L  L L+        P      ++LQ L+L +N+L       
Sbjct: 89  DNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDT 148

Query: 679 LGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLS 738
             +L  L H+ +  N I       F  L  L  L +  N ++   P  +  +        
Sbjct: 149 FRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYL 208

Query: 739 KNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQ 798
                  L          L  L L+ N    +   R    + L     + + +   +P  
Sbjct: 209 FANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQ- 266

Query: 799 LCRLNQLQLLDLSNNNLHG 817
             RL    L  L+ N+L G
Sbjct: 267 --RLAGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.3 bits (165), Expect = 6e-13
 Identities = 52/293 (17%), Positives = 82/293 (27%), Gaps = 36/293 (12%)

Query: 650 EIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRIL 709
            +P  +   ++ Q +FL  N +S            L  + +  N +       F  L +L
Sbjct: 25  AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALL 82

Query: 710 QILDISDNNISGSLPSCYDFVCIEQVHLS-KNMLHGQLKEGTFFNCLTLMILDLSYNHLN 768
           + LD+SDN    S+             L        +L  G F     L  L L  N L 
Sbjct: 83  EQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ 142

Query: 769 GNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTL 828
               D    L  L++L L  N +          L+ L  L L  N +    P  F +   
Sbjct: 143 ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRD--- 199

Query: 829 HERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLS 888
                                       + +         S   T        L  L L+
Sbjct: 200 --------------------------LGRLMTLYLFANNLSALPTEALAPLRALQYLRLN 233

Query: 889 CNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLS 941
            N  +            +Q    S + +   +P     L   +   L+ N L 
Sbjct: 234 DNPWVCDCRA-RPLWAWLQKFRGSSSEVPCSLP---QRLAGRDLKRLAANDLQ 282

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.2 bits (131), Expect = 1e-08
 Identities = 54/264 (20%), Positives = 83/264 (31%), Gaps = 28/264 (10%)

Query: 577 SIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTN 636
           ++P         Q + L  N+++          C +L  L L +N L     +    L  
Sbjct: 25  AVPVGIPAA--SQRIFLHGNRISHVPAASFR-ACRNLTILWLHSNVLARIDAAAFTGLAL 81

Query: 637 LIWLQLEGNHFVGEI-PQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHI 695
           L  L L  N  +  + P +      L  L L    L    P     L  L+++ +  N +
Sbjct: 82  LEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNAL 141

Query: 696 EGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCL 755
           +      F  L  L  L +  N IS                         + E  F    
Sbjct: 142 QALPDDTFRDLGNLTHLFLHGNRISS------------------------VPERAFRGLH 177

Query: 756 TLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNL 815
           +L  L L  N +    P     L +L  L L  NNL       L  L  LQ L L++N  
Sbjct: 178 SLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW 237

Query: 816 HGHIPSCFDNTTLHERYNNGSSLQ 839
                +      L +   + S + 
Sbjct: 238 VCDCRARPLWAWLQKFRGSSSEVP 261

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.3 bits (126), Expect = 5e-08
 Identities = 37/214 (17%), Positives = 65/214 (30%), Gaps = 4/214 (1%)

Query: 781 LSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQP 840
              + L  N +             L +L L +N L     + F    L E+ +       
Sbjct: 34  SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLS---DN 90

Query: 841 FETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQI 900
            +   V         +   L       + +       + +L     L  N L        
Sbjct: 91  AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYL-YLQDNALQALPDDTF 149

Query: 901 GNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVA 960
            +L  +  L L  N ++      F  L +++ L L  N+++   P+   +L  L    + 
Sbjct: 150 RDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLF 209

Query: 961 YNNLSGKIPERAAQFATFNESSYEGNPFLCGPPL 994
            NNLS    E  A            NP++C    
Sbjct: 210 ANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA 243

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.9 bits (99), Expect = 1e-04
 Identities = 47/267 (17%), Positives = 85/267 (31%), Gaps = 34/267 (12%)

Query: 153 SSLTSLDLSANRLKGSIDIKGPKRLSRLNNLKVFDLSGNLFNNSILSSLARLSSLRSLLL 212
           ++   + L  NR+                NL +  L  N+      ++   L+ L  L L
Sbjct: 32  AASQRIFLHGNRISHVP----AASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDL 87

Query: 213 YDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGIRDGSK 272
            DN    S+D   F  L  L  L +    +              L YL+L    ++  + 
Sbjct: 88  SDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGL-AALQYLYLQDNALQ--AL 144

Query: 273 LLQSMGSFPSLNTLDLSYNNFTETVTTTTQGFPH------------------FKSLKELY 314
              +     +L  L L  N  +       +G                     F+ L  L 
Sbjct: 145 PDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLM 204

Query: 315 MDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLV-HLQELHMADND 373
                    ++        + ++QYL L++     N    D    PL   LQ+   + ++
Sbjct: 205 TLYLFANNLSALPTEALAPLRALQYLRLND-----NPWVCDCRARPLWAWLQKFRGSSSE 259

Query: 374 LRGSLPWCLANMTSLRILDVSSNQLIG 400
           +  SLP     +    +  +++N L G
Sbjct: 260 VPCSLP---QRLAGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.9 bits (94), Expect = 5e-04
 Identities = 44/251 (17%), Positives = 83/251 (33%), Gaps = 16/251 (6%)

Query: 181 NNLKVFDLSGNLFNNSILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYN 240
              +   L GN  ++   +S     +L  L L+ N L               +       
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 241 EIDNFEVPQACSGLRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTETVTTT 300
           ++ + + P    GL +L  LHL R G+++            +L  L L  N        T
Sbjct: 92  QLRSVD-PATFHGLGRLHTLHLDRCGLQELGP--GLFRGLAALQYLYLQDNALQALPDDT 148

Query: 301 TQGFPHFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCP 360
              F    +L  L++   RI+       +   +   +  L       +  +         
Sbjct: 149 ---FRDLGNLTHLFLHGNRIS------SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRD 199

Query: 361 LVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSD 420
           L  L  L++  N+L       LA + +L+ L ++ N  +    + PL     ++    S 
Sbjct: 200 LGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPL--WAWLQKFRGSS 257

Query: 421 NHF--QIPISL 429
           +     +P  L
Sbjct: 258 SEVPCSLPQRL 268

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 82.1 bits (201), Expect = 2e-17
 Identities = 52/292 (17%), Positives = 103/292 (35%), Gaps = 34/292 (11%)

Query: 709 LQILDISDNNISGSLP---SCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYN 765
           +  LD+S  N+    P   S  +   +  +++                   L  L +++ 
Sbjct: 52  VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT 111

Query: 766 HLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDN 825
           +++G IPD +  +  L  L  ++N L G +P  +  L  L  +    N + G IP  + +
Sbjct: 112 NVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGS 171

Query: 826 TTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGL 885
            +        S  +           +++          +     +  + +          
Sbjct: 172 FSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQ------K 225

Query: 886 DLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIP 945
                  +     ++G    +  L+L +N + G +P   + L+ + SL++S         
Sbjct: 226 IHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVS--------- 276

Query: 946 YQLVELNTLAVFSVAYNNLSGKIPERAAQFATFNESSYEGNPFLCGPPLPIC 997
                          +NNL G+IP+       F+ S+Y  N  LCG PLP C
Sbjct: 277 ---------------FNNLCGEIPQ-GGNLQRFDVSAYANNKCLCGSPLPAC 312

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 79.0 bits (193), Expect = 2e-16
 Identities = 54/287 (18%), Positives = 94/287 (32%), Gaps = 32/287 (11%)

Query: 656 SKCSSLQGLFLSNNSLSGK--IPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILD 713
           ++   +  L LS  +L     IP  L NL  L  + +   +                   
Sbjct: 47  TQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGIN------------------- 87

Query: 714 ISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPD 773
              N +    P+      +  ++++   + G           TL+ LD SYN L+G +P 
Sbjct: 88  ---NLVGPIPPAIAKLTQLHYLYITHTNVSGA-IPDFLSQIKTLVTLDFSYNALSGTLPP 143

Query: 774 RVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYN 833
            +  L  L  +    N + G +P      ++L      + N                  +
Sbjct: 144 SISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVD 203

Query: 834 NGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLI 893
                            +     K   +             +  +   L+GLDL  NR+ 
Sbjct: 204 LS------RNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIY 257

Query: 894 GHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKL 940
           G +P  +  L  + +LN+S NNL G IP    NL+  +    + NK 
Sbjct: 258 GTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKC 303

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 65.5 bits (158), Expect = 8e-12
 Identities = 39/266 (14%), Positives = 74/266 (27%), Gaps = 14/266 (5%)

Query: 361 LVHLQELHMADNDLRG--SLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLIL 418
              +  L ++  +L     +P  LAN+  L  L +     +       +  LT +  L +
Sbjct: 49  TYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYI 108

Query: 419 SDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTP-NFQLQSLLLSSGYRDG 477
           +  +    I        + + +  + N           SL            +S    D 
Sbjct: 109 THTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS 168

Query: 478 ITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHK 537
                 L+    +   RL+           L   +                    +    
Sbjct: 169 YGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNM---------LEGDASVLFGS 219

Query: 538 QLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQ 597
                 +          L    +   L   ++  N + G++P     + FL  L++S N 
Sbjct: 220 DKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNN 279

Query: 598 LTGEIPEHLAMGCVSLRSLALSNNNL 623
           L GEIP+            A +NN  
Sbjct: 280 LCGEIPQ--GGNLQRFDVSAYANNKC 303

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 59.8 bits (143), Expect = 5e-10
 Identities = 55/250 (22%), Positives = 88/250 (35%), Gaps = 50/250 (20%)

Query: 629 SRNFNLTNLIWLQLEGNHFVG--EIPQSLSKCSSLQGLFLSNN-SLSGKIPRWLGNLTVL 685
             +     +  L L G +      IP SL+    L  L++    +L G IP  +  LT L
Sbjct: 44  DTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQL 103

Query: 686 RHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSC-YDFVCIEQVHLSKNMLHG 744
            ++ +   ++ G IP    Q++ L  LD S N +SG+LP        +  +    N + G
Sbjct: 104 HYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISG 163

Query: 745 QLKEGTFFNCLTLMILDLSYNHLNGNIP-------------------------------- 772
            + +           + +S N L G IP                                
Sbjct: 164 AIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNT 223

Query: 773 --------------DRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGH 818
                          +V     L+ L L +N + G +P  L +L  L  L++S NNL G 
Sbjct: 224 QKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGE 283

Query: 819 IPSCFDNTTL 828
           IP   +    
Sbjct: 284 IPQGGNLQRF 293

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 56.7 bits (135), Expect = 5e-09
 Identities = 63/271 (23%), Positives = 98/271 (36%), Gaps = 25/271 (9%)

Query: 457 SLTTPNFQLQSLLLSSGYRDG-ITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKL 515
              T  +++ +L LS          P  L N   L ++ +  I          +   T+L
Sbjct: 44  DTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQL 103

Query: 516 RQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALD 575
             L + + ++ G     +   K L  LD S N   G +P  I  +   L       N + 
Sbjct: 104 HYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSL-PNLVGITFDGNRIS 162

Query: 576 GSIPSSFGNMNFLQF-LDLSNNQLTGEIPEHLAMGCVSLRS------------------- 615
           G+IP S+G+ + L   + +S N+LTG+IP   A   ++                      
Sbjct: 163 GAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKN 222

Query: 616 --LALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSG 673
                   N       +     NL  L L  N   G +PQ L++   L  L +S N+L G
Sbjct: 223 TQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCG 282

Query: 674 KIPRWLGNLTVLRHIIMPKNHIEGPIPLEFC 704
           +IP+  GNL          N      PL  C
Sbjct: 283 EIPQ-GGNLQRFDVSAYANNKCLCGSPLPAC 312

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 51.3 bits (121), Expect = 3e-07
 Identities = 51/278 (18%), Positives = 91/278 (32%), Gaps = 19/278 (6%)

Query: 147 SSLARLSSLTSLDLSANRLKGSIDIKGPKRLSRLNNLKVFDLSGNL-FNNSILSSLARLS 205
            +  +   + +LDLS   L     I  P  L+ L  L    + G       I  ++A+L+
Sbjct: 44  DTDTQTYRVNNLDLSGLNLPKPYPI--PSSLANLPYLNFLYIGGINNLVGPIPPAIAKLT 101

Query: 206 SLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLRV 265
            L  L +        +     D LS ++ L       +        S     + + +   
Sbjct: 102 QLHYLYITHTN----VSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFD 157

Query: 266 GIRDGSKLLQSMGSFPSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDARIALNTS 325
           G R    +  S GSF  L T      N                      ++ A + L+ +
Sbjct: 158 GNRISGAIPDSYGSFSKLFTSMTISRN----------RLTGKIPPTFANLNLAFVDLSRN 207

Query: 326 FLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANM 385
            L+     +      +       N+       +    +L  L + +N + G+LP  L  +
Sbjct: 208 MLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQL 267

Query: 386 TSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHF 423
             L  L+VS N L G I      +L   +    ++N  
Sbjct: 268 KFLHSLNVSFNNLCGEIPQGG--NLQRFDVSAYANNKC 303

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 46.3 bits (108), Expect = 1e-05
 Identities = 59/314 (18%), Positives = 105/314 (33%), Gaps = 39/314 (12%)

Query: 27  CLNHERFALLQLKLFFIDPYNYLLDWVDDEGATDCCQ--WERVSCNN--TMGRVVVLDLS 82
           C   ++ ALLQ+K    +P   L  W+     TDCC   W  V C+      RV  LDLS
Sbjct: 3   CNPQDKQALLQIKKDLGNPTT-LSSWLPT---TDCCNRTWLGVLCDTDTQTYRVNNLDLS 58

Query: 83  QTHRGEYWYLNASLFTPFQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFN 142
             +  + + + +SL      L  L +   +         +    +L+ L  L +     +
Sbjct: 59  GLNLPKPYPIPSSLAN-LPYLNFLYIGGINNLVGPIPPAIA---KLTQLHYLYITHTNVS 114

Query: 143 NSILSSLARLSSLTSLDLSANRLKGSIDIKGPKRLSRLNNLKVFDLSGNLFNNSILSSLA 202
            +I   L+++ +L +LD S N    ++    P  +S L NL      GN  + +I  S  
Sbjct: 115 GAIPDFLSQIKTLVTLDFSYN----ALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYG 170

Query: 203 RLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHL 262
             S L + +              F +L+             +  V        +  +L  
Sbjct: 171 SFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAK 230

Query: 263 LRVGIRDGSK-------------------LLQSMGSFPSLNTLDLSYNNFTETVTTTTQG 303
             +    G                     L Q +     L++L++S+NN    +      
Sbjct: 231 NSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGN- 289

Query: 304 FPHFKSLKELYMDD 317
               +        +
Sbjct: 290 ---LQRFDVSAYAN 300

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 42.8 bits (99), Expect = 2e-04
 Identities = 15/57 (26%), Positives = 23/57 (40%), Gaps = 5/57 (8%)

Query: 135 NLVGNLFNNSILSSLARLSSLTSLDLSANRLKGSIDIKGPKRLSRLNNLKVFDLSGN 191
           +L  N    ++   L +L  L SL++S N L G I      +   L    V   + N
Sbjct: 250 DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI-----PQGGNLQRFDVSAYANN 301

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 42.4 bits (98), Expect = 2e-04
 Identities = 44/278 (15%), Positives = 88/278 (31%), Gaps = 15/278 (5%)

Query: 278 GSFPSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDARIALNTSFLQIIGESMPSI 337
                +N LDLS  N  +             +L  L      I    + +  I  ++  +
Sbjct: 47  TQTYRVNNLDLSGLNLPKPYPI----PSSLANLPYLNFL--YIGGINNLVGPIPPAIAKL 100

Query: 338 QYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQ 397
             L     + +N S  +   L  +  L  L  + N L G+LP  ++++ +L  +    N+
Sbjct: 101 TQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNR 160

Query: 398 LIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHS 457
           + G+I  S          + +S N     I       +           E +A ++    
Sbjct: 161 ISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSD 220

Query: 458 LTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQ 517
             T    L                  +    +L  + L + ++    P   L     L  
Sbjct: 221 KNTQKIHLA-------KNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQG-LTQLKFLHS 272

Query: 518 LSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPL 555
           L++  ++L G       + ++  +   + N      PL
Sbjct: 273 LNVSFNNLCGEIP-QGGNLQRFDVSAYANNKCLCGSPL 309

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 38.2 bits (87), Expect = 0.004
 Identities = 27/149 (18%), Positives = 42/149 (28%), Gaps = 11/149 (7%)

Query: 23  WSEGCLNHERFALLQLKLFFIDPYNYLLDWVDDEGATDCCQWERVSCNNTMGRVVVLDL- 81
              G +     +  +L        N L   +    A     +  +S N   G   VL   
Sbjct: 160 RISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGS 219

Query: 82  -----SQTHRGEYWYLNASLFTPFQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNL 136
                           +       + L  LDLR+N I G +       L++L  L  LN+
Sbjct: 220 DKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQG----LTQLKFLHSLNV 275

Query: 137 VGNLFNNSILSSLARLSSLTSLDLSANRL 165
             N     I      L        + N+ 
Sbjct: 276 SFNNLCGEI-PQGGNLQRFDVSAYANNKC 303

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.0 bits (156), Expect = 2e-11
 Identities = 52/446 (11%), Positives = 105/446 (23%), Gaps = 17/446 (3%)

Query: 539 LRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDG----SIPSSFGNMNFLQFLDLS 594
           ++ LD+           E+  +L +  V  +    L       I S+      L  L+L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 595 NNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQS 654
           +N+L       +  G +   S  +   +L+    +          L+         +  +
Sbjct: 64  SNELGDVGVHCVLQG-LQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN 122

Query: 655 LSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDI 714
           L   + LQ L         ++ +       L                +F +L +      
Sbjct: 123 LLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDIN 182

Query: 715 SDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDR 774
                            +E + L    +             +   L       N      
Sbjct: 183 EAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVG 242

Query: 775 VDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNN 834
           +  L        +           +       L  +          S   N    E    
Sbjct: 243 MAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARL 302

Query: 835 GSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIG 894
                      +    +          S   +  +          S     D        
Sbjct: 303 LCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRE--- 359

Query: 895 HIPPQIGNLTKIQTLNLSHNNL----AGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVE 950
                    + ++ L L+  ++       + +T     ++  LDLS N L      QLVE
Sbjct: 360 LCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVE 419

Query: 951 -----LNTLAVFSVAYNNLSGKIPER 971
                   L    +     S ++ +R
Sbjct: 420 SVRQPGCLLEQLVLYDIYWSEEMEDR 445

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.2 bits (154), Expect = 4e-11
 Identities = 50/461 (10%), Positives = 117/461 (25%), Gaps = 25/461 (5%)

Query: 231 NLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGIRD--GSKLLQSMGSFPSLNTLDL 288
           +++ LD+   E+ +    +    L++   + L   G+ +     +  ++   P+L  L+L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 289 SYNNFTETVTTTTQGFPHFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVS 348
             N   +             S K   +      L  +   ++  ++ ++  L   + S +
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN 122

Query: 349 NNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLI 408
                  Q LC  +   +  +    L        +      +L    +    ++S++ + 
Sbjct: 123 LLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDIN 182

Query: 409 HLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSL 468
                       +      +L+                 + ++          N      
Sbjct: 183 EAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVG 242

Query: 469 LLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGP 528
           +            +          +                         + + D     
Sbjct: 243 MAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARL 302

Query: 529 FRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSI---------P 579
               +            K+             +     F + +   +  +          
Sbjct: 303 LCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQ 362

Query: 580 SSFGNMNFLQFLDLSNNQLTGEIPEHLAMG---CVSLRSLALSNNNLEGHMFSR-----N 631
                 + L+ L L++  ++      LA       SLR L LSNN L      +      
Sbjct: 363 GLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVR 422

Query: 632 FNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLS 672
                L  L L   ++  E+         LQ L     SL 
Sbjct: 423 QPGCLLEQLVLYDIYWSEEMED------RLQALEKDKPSLR 457

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.2 bits (128), Expect = 6e-08
 Identities = 57/449 (12%), Positives = 120/449 (26%), Gaps = 21/449 (4%)

Query: 387 SLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQ---IPISLEPLFNHSRLKIFDA 443
            ++ LD+   +L  +  +  L  L   + + L D              L  +  L   + 
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 444 ENNEINAEIIES--HSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMN 501
            +NE+    +      L TP+ ++Q L L +    G            L  ++  H+  N
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN 122

Query: 502 EEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDIL 561
                 L      L       + L   +     +  +     +        + +   DI 
Sbjct: 123 LLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDI- 181

Query: 562 SRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNN 621
                    +  L   +  S   +  L+                +     SLR LAL +N
Sbjct: 182 -----NEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSN 236

Query: 622 NLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGN 681
            L     +           +L           +       + L    +     +      
Sbjct: 237 KLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELG 296

Query: 682 LTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNM 741
               R +          +   + +         S  +   +       + I      ++ 
Sbjct: 297 DEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNR-LEDA 355

Query: 742 LHGQLKEGTFFNCLTLMILDLSYNHLNGN----IPDRVDGLSQLSYLILAHNNLEGEVPI 797
              +L +G       L +L L+   ++ +    +   +     L  L L++N L     +
Sbjct: 356 GVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGIL 415

Query: 798 QLCR-----LNQLQLLDLSNNNLHGHIPS 821
           QL          L+ L L +      +  
Sbjct: 416 QLVESVRQPGCLLEQLVLYDIYWSEEMED 444

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.4 bits (113), Expect = 4e-06
 Identities = 44/476 (9%), Positives = 111/476 (23%), Gaps = 42/476 (8%)

Query: 489 DLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSL----VGPFRLPIHSHKQLRLLDV 544
           D++ + +   ++++     LL    + + + L +  L           +  +  L  L++
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 545 SKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPE 604
             N         +   L   +     ++  +  +  +   +       L   Q       
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN 122

Query: 605 HLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGL 664
            L    + L    L +           +   +    +   +    +        S+    
Sbjct: 123 LLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDIN 182

Query: 665 FLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLP 724
                 L   +      L  L+                    +         +N  G + 
Sbjct: 183 EAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVG 242

Query: 725 SCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYL 784
                  +         L       T   C  L  +  +   L        +   + +  
Sbjct: 243 MAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGAR- 301

Query: 785 ILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETS 844
                                             +       +L  +  + ++      S
Sbjct: 302 ----------------------------LLCETLLEPGCQLESLWVKSCSFTAACCSHFS 333

Query: 845 FVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRL----IGHIPPQI 900
            V+     +   +      +           G+  S+L  L L+   +       +   +
Sbjct: 334 SVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATL 393

Query: 901 GNLTKIQTLNLSHNNLAGPIPSTFS-----NLRNIESLDLSYNKLSWKIPYQLVEL 951
                ++ L+LS+N L                  +E L L     S ++  +L  L
Sbjct: 394 LANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQAL 449

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.0 bits (104), Expect = 5e-05
 Identities = 11/91 (12%), Positives = 29/91 (31%), Gaps = 1/91 (1%)

Query: 130 NLKMLNLVGNLFNNSILSSLA-RLSSLTSLDLSANRLKGSIDIKGPKRLSRLNNLKVFDL 188
           +++ L++     +++  + L   L     + L    L  +        L     L   +L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 189 SGNLFNNSILSSLARLSSLRSLLLYDNRLEG 219
             N   +  +  + +     S  +    L+ 
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQN 93

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.0 bits (104), Expect = 5e-05
 Identities = 55/462 (11%), Positives = 111/462 (24%), Gaps = 30/462 (6%)

Query: 336 SIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRG----SLPWCLANMTSLRIL 391
            IQ L +    +S+      + L  L   Q + + D  L       +   L    +L  L
Sbjct: 3   DIQSLDIQCEELSDAR--WAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 60

Query: 392 DVSSNQL----IGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAENNE 447
           ++ SN+L    +  +          I+ L L +                 L      +  
Sbjct: 61  NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLS 120

Query: 448 INAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNW 507
            N        L                         L               +    P++
Sbjct: 121 DNLLGDAGLQLLCEGLLDP---------QCRLEKLQLEYCSLSAASCEPLASVLRAKPDF 171

Query: 508 LLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVF 567
                +           L    +      + L+L      +        I    + L   
Sbjct: 172 KELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLREL 231

Query: 568 NISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHM 627
            +  N L     +            L    +          G +     A  +       
Sbjct: 232 ALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLA 291

Query: 628 FSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRH 687
            +   +    +  +             +  CS         +S+  +    L        
Sbjct: 292 GNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNR 351

Query: 688 IIMPKNHIEGPIPLEFCQLRILQILDISDNNISG----SLPSCY-DFVCIEQVHLSKNML 742
           +             +   +  L++L ++D ++S     SL +       + ++ LS N L
Sbjct: 352 LEDAGVRELCQGLGQPGSV--LRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCL 409

Query: 743 HGQ----LKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQ 780
                  L E        L  L L   + +  + DR+  L +
Sbjct: 410 GDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEK 451

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.8 bits (101), Expect = 1e-04
 Identities = 16/82 (19%), Positives = 32/82 (39%), Gaps = 6/82 (7%)

Query: 182 NLKVFDLSGNLFNNSILSSLA-RLSSLRSLLLYDNRLEGSIDVKE----FDSLSNLEELD 236
           +++  D+     +++  + L   L   + + L D  L      K+          L EL+
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGL-TEARCKDISSALRVNPALAELN 61

Query: 237 MSYNEIDNFEVPQACSGLRKLS 258
           +  NE+ +  V     GL+  S
Sbjct: 62  LRSNELGDVGVHCVLQGLQTPS 83

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.9 bits (96), Expect = 4e-04
 Identities = 17/94 (18%), Positives = 36/94 (38%), Gaps = 8/94 (8%)

Query: 103 LESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNN----SILSSLARLSSLTSL 158
           ++SLD++  +++   +    E L  L   +++ L            I S+L    +L  L
Sbjct: 4   IQSLDIQCEELS---DARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 60

Query: 159 DLSANRLKGSIDIKGPKRLSRLN-NLKVFDLSGN 191
           +L +N L         + L   +  ++   L   
Sbjct: 61  NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNC 94

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (94), Expect = 6e-04
 Identities = 22/131 (16%), Positives = 41/131 (31%), Gaps = 5/131 (3%)

Query: 61  CCQWERVSCNNTMGRVVVLDLSQTHRGEYWYLNASLFTPFQQLESLDLRDNDIAGCVENE 120
           C  +  V   N     + +  ++        L   L  P   L  L L D D++    + 
Sbjct: 329 CSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSS 388

Query: 121 GLERLSRLSNLKMLNLVGNLFNNSILSSLAR-----LSSLTSLDLSANRLKGSIDIKGPK 175
               L    +L+ L+L  N   ++ +  L          L  L L        ++ +   
Sbjct: 389 LAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQA 448

Query: 176 RLSRLNNLKVF 186
                 +L+V 
Sbjct: 449 LEKDKPSLRVI 459

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (89), Expect = 0.002
 Identities = 17/74 (22%), Positives = 27/74 (36%), Gaps = 5/74 (6%)

Query: 153 SSLTSLDLSANRLKGSIDIKGPKRLSRLNNLKVFDLSGNLFNNSILSSLAR-----LSSL 207
           S L  L L+   +  S        L   ++L+  DLS N   ++ +  L          L
Sbjct: 369 SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLL 428

Query: 208 RSLLLYDNRLEGSI 221
             L+LYD      +
Sbjct: 429 EQLVLYDIYWSEEM 442

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (89), Expect = 0.002
 Identities = 19/85 (22%), Positives = 32/85 (37%), Gaps = 13/85 (15%)

Query: 129 SNLKMLNLVGNLFNN----SILSSLARLSSLTSLDLSANRLKGSIDIKGPKRLSR----- 179
           S L++L L     ++    S+ ++L    SL  LDLS N     +   G  +L       
Sbjct: 369 SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNC----LGDAGILQLVESVRQP 424

Query: 180 LNNLKVFDLSGNLFNNSILSSLARL 204
              L+   L    ++  +   L  L
Sbjct: 425 GCLLEQLVLYDIYWSEEMEDRLQAL 449

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.0 bits (136), Expect = 2e-09
 Identities = 35/182 (19%), Positives = 60/182 (32%), Gaps = 4/182 (2%)

Query: 635 TNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNH 694
            +   L L  N        +L   + L  L L    L+         L VL  + +  N 
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDG--TLPVLGTLDLSHNQ 88

Query: 695 IEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNC 754
           ++    L      +  +    +   S  L +      +++++L  N     L  G     
Sbjct: 89  LQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE-LKTLPPGLLTPT 147

Query: 755 LTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNN 814
             L  L L+ N+L       ++GL  L  L+L  N+L   +P      + L    L  N 
Sbjct: 148 PKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNP 206

Query: 815 LH 816
             
Sbjct: 207 WL 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.6 bits (127), Expect = 3e-08
 Identities = 45/179 (25%), Positives = 61/179 (34%), Gaps = 5/179 (2%)

Query: 650 EIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRIL 709
            +P  L K      L LS N L       L   T L  + +  +  E         L +L
Sbjct: 24  ALPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQLNL--DRAELTKLQVDGTLPVL 79

Query: 710 QILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNG 769
             LD+S N +            +  + +S N L   L  G       L  L L  N L  
Sbjct: 80  GTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTS-LPLGALRGLGELQELYLKGNELKT 138

Query: 770 NIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTL 828
             P  +    +L  L LA+NNL       L  L  L  L L  N+L+      F +  L
Sbjct: 139 LPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLL 197

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.8 bits (125), Expect = 6e-08
 Identities = 33/205 (16%), Positives = 65/205 (31%), Gaps = 8/205 (3%)

Query: 539 LRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQL 598
              ++  K N    +P ++       T+ ++S N L     ++      L  L+L   + 
Sbjct: 12  HLEVNCDKRNLT-ALPPDLP---KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE- 66

Query: 599 TGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKC 658
              + +    G + +      ++N    +      L  L  L +  N        +L   
Sbjct: 67  ---LTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGL 123

Query: 659 SSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNN 718
             LQ L+L  N L    P  L     L  + +  N++          L  L  L + +N+
Sbjct: 124 GELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENS 183

Query: 719 ISGSLPSCYDFVCIEQVHLSKNMLH 743
           +       +    +    L  N   
Sbjct: 184 LYTIPKGFFGSHLLPFAFLHGNPWL 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.9 bits (115), Expect = 1e-06
 Identities = 35/212 (16%), Positives = 64/212 (30%), Gaps = 12/212 (5%)

Query: 753 NCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSN 812
              + + ++    +L   +P  +      + L L+ N L       L    +L  L+L  
Sbjct: 8   KVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDR 64

Query: 813 NNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITY 872
             L                     +L         +  +        +    F   +   
Sbjct: 65  AELTKLQVDGT--------LPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLP 116

Query: 873 TYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIES 932
               R    L  L L  N L    P  +    K++ L+L++NNL        + L N+++
Sbjct: 117 LGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDT 176

Query: 933 LDLSYNKLSWKIPYQLVELNTLAVFSVAYNNL 964
           L L  N   + IP      + L    +  N  
Sbjct: 177 LLLQENS-LYTIPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.9 bits (94), Expect = 5e-04
 Identities = 43/188 (22%), Positives = 66/188 (35%), Gaps = 8/188 (4%)

Query: 531 LPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQF 590
           LP    K   +L +S+N         +    +RLT  N     LD +  +       L  
Sbjct: 25  LPPDLPKDTTILHLSENLLYTFSLATLMP-YTRLTQLN-----LDRAELTKLQVDGTLPV 78

Query: 591 LDLSNNQLTGEIPEHL-AMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVG 649
           L   +          L      +L  L +S N L          L  L  L L+GN    
Sbjct: 79  LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKT 138

Query: 650 EIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRIL 709
             P  L+    L+ L L+NN+L+      L  L  L  +++ +N +   IP  F    +L
Sbjct: 139 LPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLL 197

Query: 710 QILDISDN 717
               +  N
Sbjct: 198 PFAFLHGN 205

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.9 bits (89), Expect = 0.002
 Identities = 37/273 (13%), Positives = 77/273 (28%), Gaps = 33/273 (12%)

Query: 151 RLSSLTSLDLSANRLKGSIDIKGPKRLSRLNNLKVFDLSGNLFNNSILSSLARLSSLRSL 210
           +++S   ++     L  ++    P  L +  +  +  LS NL     L++L   + L  L
Sbjct: 8   KVASHLEVNCDKRNLT-AL----PPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQL 60

Query: 211 LLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGIRDG 270
            L    L           L  L+        +           +  +S+  L  + +   
Sbjct: 61  NLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGAL 120

Query: 271 SKLLQSMGSFPSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDARIALNTSFLQII 330
             L +    +   N L               +      +L EL                 
Sbjct: 121 RGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLN----------- 169

Query: 331 GESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPW-CLANMTSLR 389
              + ++  L L      N+  T+ +G      L    +  N      PW C   +   R
Sbjct: 170 --GLENLDTLLLQE----NSLYTIPKGFFGSHLLPFAFLHGN------PWLCNCEILYFR 217

Query: 390 --ILDVSSNQLIGSISSSPLIHLTSIEDLILSD 420
             + D + N  +           +++  +   +
Sbjct: 218 RWLQDNAENVYVWKQGVDVKAMTSNVASVQCDN 250

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.4 bits (137), Expect = 3e-09
 Identities = 44/291 (15%), Positives = 88/291 (30%), Gaps = 24/291 (8%)

Query: 542 LDVSKNNFQGHIPLEIGDILSR-LTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTG 600
           LD++  N     P   G +LS+ +  F    + +D  +   F     +Q +DLSN+ +  
Sbjct: 5   LDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFR-VQHMDLSNSVIEV 60

Query: 601 EIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSS 660
                +   C  L++L+L    L   + +     +NL+ L L G     E          
Sbjct: 61  STLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLS-- 118

Query: 661 LQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNIS 720
                 S          +      ++  +   +     + L   +          +   S
Sbjct: 119 ----SCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYR---------KNLQKS 165

Query: 721 GSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSY-NHLNGNIPDRVDGLS 779
                      +  + LS +++        FF    L  L LS    +       +  + 
Sbjct: 166 DLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIP 225

Query: 780 QLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHE 830
            L  L +     +G + +       L  L ++ ++          N    E
Sbjct: 226 TLKTLQVFGIVPDGTLQL---LKEALPHLQINCSHFTTIARPTIGNKKNQE 273

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.0 bits (123), Expect = 1e-07
 Identities = 30/235 (12%), Positives = 70/235 (29%), Gaps = 5/235 (2%)

Query: 187 DLSGNLFNNSILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFE 246
           DL+G   +  +   L     + +     + ++  +   E  S   ++ +D+S + I+   
Sbjct: 6   DLTGKNLHPDVTGRLLSQG-VIAFRCPRSFMDQPLA--EHFSPFRVQHMDLSNSVIEVST 62

Query: 247 VPQACSGLRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTETVTTTTQGFPH 306
           +    S   KL  L L  + + D   ++ ++    +L  L+LS  +        T     
Sbjct: 63  LHGILSQCSKLQNLSLEGLRLSD--PIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSC 120

Query: 307 FKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQE 366
            +  +               + +   S    Q            S            +  
Sbjct: 121 SRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHL 180

Query: 367 LHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDN 421
                  L+         +  L+ L +S    I   +   L  + +++ L +   
Sbjct: 181 DLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 235

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.9 bits (107), Expect = 2e-05
 Identities = 54/258 (20%), Positives = 97/258 (37%), Gaps = 11/258 (4%)

Query: 76  VVVLDLSQTHRGEYWYLNASLFTPFQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLN 135
           V+     ++   +    + S F    +++ +DL ++ I     +     LS+ S L+ L+
Sbjct: 25  VIAFRCPRSFMDQPLAEHFSPF----RVQHMDLSNSVIEV---STLHGILSQCSKLQNLS 77

Query: 136 LVGNLFNNSILSSLARLSSLTSLDLSANR-LKGSIDIKGPKRLSRL--NNLKVFDLSGNL 192
           L G   ++ I+++LA+ S+L  L+LS                 SRL   NL         
Sbjct: 78  LEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEK 137

Query: 193 FNNSILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQACS 252
                ++ ++   +  +L  Y   L+ S          NL  LD+S + +   +  Q   
Sbjct: 138 HVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF 197

Query: 253 GLRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTETVTTTTQGFPHFKSLKE 312
            L  L +L L R         L  +G  P+L TL +       T+    +  PH +    
Sbjct: 198 QLNYLQHLSLSRCYDIIPE-TLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQINCS 256

Query: 313 LYMDDARIALNTSFLQII 330
            +   AR  +     Q I
Sbjct: 257 HFTTIARPTIGNKKNQEI 274

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.5 bits (106), Expect = 2e-05
 Identities = 35/240 (14%), Positives = 76/240 (31%), Gaps = 8/240 (3%)

Query: 707 RILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNH 766
           + +       + +   L   +    ++ + LS +++      G    C  L  L L    
Sbjct: 23  QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLR 82

Query: 767 LNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNT 826
           L+  I + +   S L  L L+  +   E  +Q    +  +L +L+ +             
Sbjct: 83  LSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVA 142

Query: 827 TLHERYNNG----SSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLL 882
             H          S  +       +   +   P    L+  D          +    + L
Sbjct: 143 VAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYL 202

Query: 883 SGLDLS-CNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLS 941
             L LS C  +I     ++G +  ++TL +      G +      L +   L ++ +  +
Sbjct: 203 QHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPH---LQINCSHFT 259

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.1 bits (105), Expect = 2e-05
 Identities = 39/314 (12%), Positives = 84/314 (26%), Gaps = 52/314 (16%)

Query: 591 LDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGE 650
           LDL+   L  ++   L      + +     + ++  +   +F+   +  + L  +     
Sbjct: 5   LDLTGKNLHPDVTGRLLS--QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVS 61

Query: 651 -IPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRIL 709
            +   LS+CS LQ L L    LS  I   L   + L  + +                   
Sbjct: 62  TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCS--------------- 106

Query: 710 QILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNG 769
              + +   +  S     +         ++  +   +   +       +         + 
Sbjct: 107 GFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSD 166

Query: 770 NIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSN-NNLHGHIPSCFDNTTL 828
                    + +   +     L+ +   +  +LN LQ L LS   ++             
Sbjct: 167 LSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEI-- 224

Query: 829 HERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLS 888
                                     P  + L+ F              +   L  L ++
Sbjct: 225 --------------------------PTLKTLQVFGIVPDGTL----QLLKEALPHLQIN 254

Query: 889 CNRLIGHIPPQIGN 902
           C+       P IGN
Sbjct: 255 CSHFTTIARPTIGN 268

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.6 bits (101), Expect = 7e-05
 Identities = 31/241 (12%), Positives = 70/241 (29%), Gaps = 12/241 (4%)

Query: 493 VRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGH 552
           + L+   ++ +    LL       +                 S  +++ +D+S +  +  
Sbjct: 5   LDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHF---SPFRVQHMDLSNSVIEVS 61

Query: 553 IPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDL-SNNQLTGEIPEHLAMGCV 611
               I    S+L   ++    L   I ++    + L  L+L   +  +    + L   C 
Sbjct: 62  TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCS 121

Query: 612 SLRSLALSNNNLEGHMFSRNFNLTNLIWLQ-------LEGNHFVGEIPQSLSKCSSLQGL 664
            L  L LS          +         +         +               + +   
Sbjct: 122 RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD 181

Query: 665 FLSNNSLSGKIPRWLGNLTVLRHIIMPK-NHIEGPIPLEFCQLRILQILDISDNNISGSL 723
              +  L     +    L  L+H+ + +   I     LE  ++  L+ L +      G+L
Sbjct: 182 LSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTL 241

Query: 724 P 724
            
Sbjct: 242 Q 242

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.6 bits (101), Expect = 8e-05
 Identities = 44/262 (16%), Positives = 86/262 (32%), Gaps = 18/262 (6%)

Query: 134 LNLVGNLFNNSILSSLARLSSLTSLDLSANRLKGSIDIKGPKRLSRLNNLKVFDLSGNLF 193
           L+L G   +  +   L     + +     + +   +             ++  DLS ++ 
Sbjct: 5   LDLTGKNLHPDVTGRLLSQG-VIAFRCPRSFMDQPLA-----EHFSPFRVQHMDLSNSVI 58

Query: 194 NNSILSS-LARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQA-- 250
             S L   L++ S L++L L   RL   I V      SNL  L++S     +    Q   
Sbjct: 59  EVSTLHGILSQCSKLQNLSLEGLRLSDPI-VNTLAKNSNLVRLNLSGCSGFSEFALQTLL 117

Query: 251 --CSGLRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTETVTTTTQGFPHFK 308
             CS L +L+         +     +  +    +   L     N  ++  +T        
Sbjct: 118 SSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNL 177

Query: 309 SLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELH 368
                ++D +   +  +        +  +Q+LSLS              L  +  L+ L 
Sbjct: 178 V----HLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPE--TLLELGEIPTLKTLQ 231

Query: 369 MADNDLRGSLPWCLANMTSLRI 390
           +      G+L      +  L+I
Sbjct: 232 VFGIVPDGTLQLLKEALPHLQI 253

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.1 bits (92), Expect = 0.001
 Identities = 36/231 (15%), Positives = 74/231 (32%), Gaps = 10/231 (4%)

Query: 464 QLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVND 523
            + +      + D      F  +   ++++ LS+  +     + +L   +KL+ LSL   
Sbjct: 24  GVIAFRCPRSFMDQPLAEHF--SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGL 81

Query: 524 SLVGPFRLPIHSHKQLRLLDVSKN-NFQGHIPLEIGDILSRLTVFNI------SMNALDG 576
            L  P    +  +  L  L++S    F       +    SRL   N+      +   +  
Sbjct: 82  RLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQV 141

Query: 577 SIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTN 636
           ++      +  L       N    ++   +      +      +  L+   F   F L  
Sbjct: 142 AVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNY 201

Query: 637 LIWLQLEG-NHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLR 686
           L  L L      + E    L +  +L+ L +      G +      L  L+
Sbjct: 202 LQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQ 252

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.1 bits (92), Expect = 0.001
 Identities = 44/272 (16%), Positives = 92/272 (33%), Gaps = 18/272 (6%)

Query: 418 LSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDG 477
           L+  +   P     L +   +  F    + ++  + E  S      ++Q + LS+   + 
Sbjct: 7   LTGKNLH-PDVTGRLLSQG-VIAFRCPRSFMDQPLAEHFSPF----RVQHMDLSNSVIEV 60

Query: 478 ITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHK 537
            T    L     L+ + L  +++++   N  L  N+ L +L+L   S    F L      
Sbjct: 61  STLHGILSQCSKLQNLSLEGLRLSDPIVNT-LAKNSNLVRLNLSGCSGFSEFALQTLLSS 119

Query: 538 QLRLLDVSKNNFQGHIPLEIGDILSR-------LTVFNISMNALDGSIPSSFGNMNFLQF 590
             RL +++ +         +   ++        L +     N     + +       L  
Sbjct: 120 CSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVH 179

Query: 591 LDLSNNQLTGEIPEHLAMGCVSLRSLALSN-NNLEGHMFSRNFNLTNLIWLQLEGNHFVG 649
           LDLS++ +              L+ L+LS   ++          +  L  LQ+ G    G
Sbjct: 180 LDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDG 239

Query: 650 EIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGN 681
            +         LQ   ++ +  +      +GN
Sbjct: 240 TLQLLKEALPHLQ---INCSHFTTIARPTIGN 268

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.2 bits (87), Expect = 0.004
 Identities = 17/94 (18%), Positives = 38/94 (40%), Gaps = 1/94 (1%)

Query: 862 SFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNL-AGPI 920
           + D T K++     GR+ S            +     +  +  ++Q ++LS++ +    +
Sbjct: 4   TLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTL 63

Query: 921 PSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTL 954
               S    +++L L   +LS  I   L + + L
Sbjct: 64  HGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNL 97

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 50.8 bits (120), Expect = 2e-07
 Identities = 31/193 (16%), Positives = 66/193 (34%), Gaps = 15/193 (7%)

Query: 753 NCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSN 812
                +  +L    +   +    + L+ +  +I  +++++    IQ   L  +  L L+ 
Sbjct: 22  AFAETIKDNLKKKSVTDAVTQ--NELNSIDQIIANNSDIKSVQGIQ--YLPNVTKLFLNG 77

Query: 813 NNLHGHIP---------SCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESF 863
           N L    P            D   + +  +     +    S    G  D++    + +  
Sbjct: 78  NKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLE 137

Query: 864 DFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPST 923
                +   T    +  L     LS           +  LTK+Q L LS N+++      
Sbjct: 138 SLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISD--LRA 195

Query: 924 FSNLRNIESLDLS 936
            + L+N++ L+L 
Sbjct: 196 LAGLKNLDVLELF 208

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 46.5 bits (109), Expect = 5e-06
 Identities = 30/195 (15%), Positives = 68/195 (34%), Gaps = 22/195 (11%)

Query: 633 NLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPK 692
                I   L+       + Q+  + +S+  +  +N+ +       +  L  +  + +  
Sbjct: 22  AFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNG 77

Query: 693 NHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHG-------- 744
           N +    PL   +      LD +      SL        +   H   + ++G        
Sbjct: 78  NKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLE 137

Query: 745 -------QLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPI 797
                  ++ + T  + LT +      ++   +I   + GL++L  L L+ N++      
Sbjct: 138 SLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISD--LR 194

Query: 798 QLCRLNQLQLLDLSN 812
            L  L  L +L+L +
Sbjct: 195 ALAGLKNLDVLELFS 209

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.4 bits (93), Expect = 5e-04
 Identities = 36/209 (17%), Positives = 68/209 (32%), Gaps = 33/209 (15%)

Query: 553 IPLEIGDI-----LSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLA 607
           +P  I  I      +     N+   ++  ++  +   +N +  +  +N+ +         
Sbjct: 10  VPTPIKQIFSDDAFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIKSVQGIQ-- 65

Query: 608 MGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWL------------------QLEGNHFVG 649
               ++  L L+ N L       N      ++L                   L   H   
Sbjct: 66  -YLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGI 124

Query: 650 EIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRIL 709
                L     L+ L+L NN ++         LT L  + +  N I   +P     L  L
Sbjct: 125 SDINGLVHLPQLESLYLGNNKITDITVLS--RLTKLDTLSLEDNQISDIVP--LAGLTKL 180

Query: 710 QILDISDNNISGSLPSCYDFVCIEQVHLS 738
           Q L +S N+IS  L +      ++ + L 
Sbjct: 181 QNLYLSKNHIS-DLRALAGLKNLDVLELF 208

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 51.4 bits (121), Expect = 4e-07
 Identities = 53/319 (16%), Positives = 93/319 (29%), Gaps = 20/319 (6%)

Query: 658 CSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDN 717
                 L L+N  LS  +P    +L  L   +   N +   +P     L+ L + + +  
Sbjct: 37  DRQAHELELNNLGLS-SLPELPPHLESL---VASCNSLT-ELPELPQSLKSLLVDNNNLK 91

Query: 718 NISGSLPSCYDFVCIEQVHLSKNMLHG------QLKEGTFFNCLTLMILDLSYNHLNGNI 771
            +S   P                 L           +      L  +   L +     N 
Sbjct: 92  ALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQ 151

Query: 772 PDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHER 831
            + +  L  L +L   + +      +    L+   ++  +N              T    
Sbjct: 152 LEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYA 211

Query: 832 YNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNR 891
            NN     P     +    +  +    + E     T            S L       N 
Sbjct: 212 DNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNA 271

Query: 892 LIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVEL 951
               I         ++ LN+S+N L   +P+    L   E L  S+N L+ ++P     L
Sbjct: 272 SSNEIRSLCDLPPSLEELNVSNNKLIE-LPALPPRL---ERLIASFNHLA-EVPELPQNL 326

Query: 952 NTLAVFSVAYNNLSGKIPE 970
             L    V YN L  + P+
Sbjct: 327 KQL---HVEYNPLR-EFPD 341

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 50.6 bits (119), Expect = 5e-07
 Identities = 47/320 (14%), Positives = 95/320 (29%), Gaps = 22/320 (6%)

Query: 530 RLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQ 589
           RL     +Q   L+++           + ++   L     S N+L   +P    ++  L 
Sbjct: 31  RLRDCLDRQAHELELNNLGLS-----SLPELPPHLESLVASCNSLT-ELPELPQSLKSLL 84

Query: 590 FLDLSNNQLTGEIP----------EHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIW 639
             + +   L+   P          +   +  +   S     +     +        +L +
Sbjct: 85  VDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEF 144

Query: 640 LQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPI 699
           +    N              +      ++      +P  L ++    +I+     ++   
Sbjct: 145 IAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLP 204

Query: 700 PLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMI 759
            L         +  + D   S    +  D    +   L +++    + E  F     L  
Sbjct: 205 FLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPP 264

Query: 760 LDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHI 819
                N  +  I    D    L  L +++N L  E+P    R   L+ L  S N+L   +
Sbjct: 265 NLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPR---LERLIASFNHL-AEV 319

Query: 820 PSCFDN-TTLHERYNNGSSL 838
           P    N   LH  YN     
Sbjct: 320 PELPQNLKQLHVEYNPLREF 339

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 44.4 bits (103), Expect = 5e-05
 Identities = 52/307 (16%), Positives = 88/307 (28%), Gaps = 16/307 (5%)

Query: 322 LNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELH---MADNDLRGSL 378
           LN   L  + E  P ++ L  S     N+   L +    L  L   +    A +DL   L
Sbjct: 45  LNNLGLSSLPELPPHLESLVASC----NSLTELPELPQSLKSLLVDNNNLKALSDLPPLL 100

Query: 379 PWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRL 438
            +   +   L  L    N     I       L  + DL  S        +        + 
Sbjct: 101 EYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQN 160

Query: 439 KIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHI 498
             F       N  + +   L      + +          +    FL   +    +  +  
Sbjct: 161 LPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLP 220

Query: 499 KMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIG 558
            +        + +N       L            I S       ++   N   +    + 
Sbjct: 221 DLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLC 280

Query: 559 DILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLAL 618
           D+   L   N+S N L   +P+       L+ L  S N L  E+PE       +L+ L +
Sbjct: 281 DLPPSLEELNVSNNKLI-ELPALPPR---LERLIASFNHLA-EVPELPQ----NLKQLHV 331

Query: 619 SNNNLEG 625
             N L  
Sbjct: 332 EYNPLRE 338

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 44.0 bits (102), Expect = 6e-05
 Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 14/136 (10%)

Query: 485 YNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDV 544
            + +  +   L       +    +    ++L       ++     R        L  L+V
Sbjct: 232 RDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNV 291

Query: 545 SKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPE 604
           S N        E+  +  RL     S N L   +P    N   L+ L +  N L  E P+
Sbjct: 292 SNNKLI-----ELPALPPRLERLIASFNHL-AEVPELPQN---LKQLHVEYNPLR-EFPD 341

Query: 605 HLAMGCVSLRSLALSN 620
                  S+  L +++
Sbjct: 342 IPE----SVEDLRMNS 353

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 43.7 bits (101), Expect = 8e-05
 Identities = 56/335 (16%), Positives = 97/335 (28%), Gaps = 26/335 (7%)

Query: 359 CPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLIL 418
           C      EL + +  L  SLP    +   L  L  S N L   +   P     S++ L++
Sbjct: 35  CLDRQAHELELNNLGLS-SLPELPPH---LESLVASCNSL-TELPELP----QSLKSLLV 85

Query: 419 SDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGI 478
            +N+ +    L PL  +  +     E             +   N  L+ L       + I
Sbjct: 86  DNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFI 145

Query: 479 TFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQ 538
                   +            +  +  +     +  L   S+V  + +      + +   
Sbjct: 146 AAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPF 205

Query: 539 LRLLDVSKNNFQGHIPLEIG-------DILSRLTVFNISMNALDGSIPSSFGNMNFLQFL 591
           L  +    N  +    L          D                    + F  ++ L   
Sbjct: 206 LTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPN 265

Query: 592 DLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEI 651
               N  + EI         SL  L +SNN L             L  L    NH   E+
Sbjct: 266 LYYLNASSNEIRSLC-DLPPSLEELNVSNNKLI----ELPALPPRLERLIASFNHL-AEV 319

Query: 652 PQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLR 686
           P+      +L+ L +  N L  + P    ++  LR
Sbjct: 320 PELP---QNLKQLHVEYNPLR-EFPDIPESVEDLR 350

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 40.6 bits (93), Expect = 7e-04
 Identities = 43/294 (14%), Positives = 84/294 (28%), Gaps = 17/294 (5%)

Query: 562 SRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLA------MGCVSLRS 615
            +     ++   L  S+P    +   L+ L  S N LT E+PE         +   +L++
Sbjct: 38  RQAHELELNNLGL-SSLPELPPH---LESLVASCNSLT-ELPELPQSLKSLLVDNNNLKA 92

Query: 616 LALSNNNLEGHMFSRNFNLTNLIWLQL----EGNHFVGEIPQSLSKCSSLQGLFLSNNSL 671
           L+     LE    S N                 +     + +      SL+ +   NN L
Sbjct: 93  LSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQL 152

Query: 672 SGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVC 731
                          +           +PL    +     +      +         +  
Sbjct: 153 EELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYAD 212

Query: 732 IEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNL 791
              +    ++           N LT +              +   GLS+L   +   N  
Sbjct: 213 NNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNAS 272

Query: 792 EGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDN-TTLHERYNNGSSLQPFETS 844
             E+         L+ L++SNN L   +P+       L   +N+ + +     +
Sbjct: 273 SNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLERLIASFNHLAEVPELPQN 325

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 47.8 bits (113), Expect = 4e-07
 Identities = 31/111 (27%), Positives = 52/111 (46%), Gaps = 9/111 (8%)

Query: 132 KMLNLVGNLFNNSILSSLARLSSLTSLDLSANRLKGSIDIKGPKRLSRLNNLKVFDLSGN 191
           ++L+L       ++L  L +L  +T LDLS NRL+          L+ L  L+V     +
Sbjct: 1   RVLHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPPA-----LAALRCLEVLQ--AS 51

Query: 192 LFNNSILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEI 242
                 +  +A L  L+ LLL +NRL+ S  ++   S   L  L++  N +
Sbjct: 52  DNALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSL 102

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 45.9 bits (108), Expect = 2e-06
 Identities = 26/130 (20%), Positives = 50/130 (38%), Gaps = 8/130 (6%)

Query: 184 KVFDLSGNLFNNSILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEID 243
           +V  L+      ++L  L +L  +  L L  NRL          +L+ L  L++     +
Sbjct: 1   RVLHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRA-----LPPALAALRCLEVLQASDN 53

Query: 244 NFEVPQACSGLRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTETVTTTTQG 303
             E     + L +L  L L    ++  +  +Q + S P L  L+L  N+  +      + 
Sbjct: 54  ALENVDGVANLPRLQELLLCNNRLQQSA-AIQPLVSCPRLVLLNLQGNSLCQEEGIQERL 112

Query: 304 FPHFKSLKEL 313
                S+  +
Sbjct: 113 AEMLPSVSSI 122

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.6 bits (97), Expect = 5e-05
 Identities = 27/127 (21%), Positives = 47/127 (37%), Gaps = 13/127 (10%)

Query: 566 VFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEG 625
           V +++   L  ++      +  +  LDLS+N+L    P   A+ C+ +       ++   
Sbjct: 2   VLHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQ----ASDNAL 55

Query: 626 HMFSRNFNLTNLIWLQLEGNHFVG-EIPQSLSKCSSLQGLFLSNNSLSG------KIPRW 678
                  NL  L  L L  N        Q L  C  L  L L  NSL        ++   
Sbjct: 56  ENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEM 115

Query: 679 LGNLTVL 685
           L +++ +
Sbjct: 116 LPSVSSI 122

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.6 bits (97), Expect = 5e-05
 Identities = 27/125 (21%), Positives = 54/125 (43%), Gaps = 7/125 (5%)

Query: 664 LFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSL 723
           L L++  L+  +   L  L ++ H+ +  N +    P     LR L++L  SDN +  ++
Sbjct: 3   LHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALE-NV 58

Query: 724 PSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHL---NGNIPDRVDGLSQ 780
               +   ++++ L  N L          +C  L++L+L  N L    G      + L  
Sbjct: 59  DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPS 118

Query: 781 LSYLI 785
           +S ++
Sbjct: 119 VSSIL 123

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.5 bits (94), Expect = 2e-04
 Identities = 30/155 (19%), Positives = 50/155 (32%), Gaps = 38/155 (24%)

Query: 783 YLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFE 842
            L LAH +L   V   L +L  +  LDLS+N L    P+      L     + ++L+  +
Sbjct: 2   VLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD 59

Query: 843 TSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQ-IG 901
               +    +                                L L  NRL      Q + 
Sbjct: 60  GVANLPRLQE--------------------------------LLLCNNRLQQSAAIQPLV 87

Query: 902 NLTKIQTLNLSHNNLAGP---IPSTFSNLRNIESL 933
           +  ++  LNL  N+L             L ++ S+
Sbjct: 88  SCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 122

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.5 bits (94), Expect = 2e-04
 Identities = 25/130 (19%), Positives = 50/130 (38%), Gaps = 11/130 (8%)

Query: 158 LDLSANRLKGSIDIKGPKRLSRLNNLKVFDLSGNLFNNSILSSLARLSSLRSLLLYDNRL 217
           L L+        D+     L +L  +   DLS    +N + +    L++LR L +     
Sbjct: 3   LHLAHK------DLTVLCHLEQLLLVTHLDLS----HNRLRALPPALAALRCLEVLQASD 52

Query: 218 EGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGIRDGSKLLQSM 277
               +V    +L  L+EL +  N +      Q      +L  L+L    +     + + +
Sbjct: 53  NALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERL 112

Query: 278 GS-FPSLNTL 286
               PS++++
Sbjct: 113 AEMLPSVSSI 122

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.3 bits (91), Expect = 3e-04
 Identities = 25/109 (22%), Positives = 42/109 (38%), Gaps = 6/109 (5%)

Query: 710 QILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNG 769
           ++L ++  +++  L      + +  + LS N L              L +L  S N L  
Sbjct: 1   RVLHLAHKDLT-VLCHLEQLLLVTHLDLSHNRLRAL--PPALAALRCLEVLQASDNALEN 57

Query: 770 NIPDRVDGLSQLSYLILAHNNLEGEVPIQ-LCRLNQLQLLDLSNNNLHG 817
                     Q   L+L +N L+    IQ L    +L LL+L  N+L  
Sbjct: 58  VDGVANLPRLQ--ELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.9 bits (90), Expect = 5e-04
 Identities = 24/133 (18%), Positives = 44/133 (33%), Gaps = 11/133 (8%)

Query: 208 RSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGI 267
           R L L    L     +   + L  +  LD+S+N +           L  L  L +L+   
Sbjct: 1   RVLHLAHKDLT---VLCHLEQLLLVTHLDLSHNRLRAL-----PPALAALRCLEVLQASD 52

Query: 268 RDGSKLLQSMGSFPSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDARIALNTSFL 327
                +   + + P L  L L  N   ++     Q       L  L +    +       
Sbjct: 53  NALENV-DGVANLPRLQELLLCNNRLQQS--AAIQPLVSCPRLVLLNLQGNSLCQEEGIQ 109

Query: 328 QIIGESMPSIQYL 340
           + + E +PS+  +
Sbjct: 110 ERLAEMLPSVSSI 122

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.4 bits (86), Expect = 0.002
 Identities = 22/117 (18%), Positives = 38/117 (32%), Gaps = 26/117 (22%)

Query: 885 LDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNI-------------- 930
           L L+   L   +   +  L  +  L+LSHN L    P+  + LR +              
Sbjct: 3   LHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQASDNALENVD 59

Query: 931 --------ESLDLSYNKL-SWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQFATF 978
                   + L L  N+L        LV    L + ++  N+L  +   +       
Sbjct: 60  GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEML 116

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.0 bits (85), Expect = 0.002
 Identities = 25/124 (20%), Positives = 54/124 (43%), Gaps = 4/124 (3%)

Query: 346 SVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSS 405
            +++   T+   L  L+ +  L ++ N LR         + +LR L+V         +  
Sbjct: 4   HLAHKDLTVLCHLEQLLLVTHLDLSHNRLR----ALPPALAALRCLEVLQASDNALENVD 59

Query: 406 PLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQL 465
            + +L  +++L+L +N  Q   +++PL +  RL + + + N +  E      L      +
Sbjct: 60  GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSV 119

Query: 466 QSLL 469
            S+L
Sbjct: 120 SSIL 123

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.6 bits (84), Expect = 0.003
 Identities = 23/110 (20%), Positives = 37/110 (33%), Gaps = 6/110 (5%)

Query: 516 RQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALD 575
           R L L +  L       +     +  LD+S N  +   P     + +   +  +  +   
Sbjct: 1   RVLHLAHKDLTVL--CHLEQLLLVTHLDLSHNRLRALPP----ALAALRCLEVLQASDNA 54

Query: 576 GSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEG 625
                   N+  LQ L L NN+L         + C  L  L L  N+L  
Sbjct: 55  LENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.6 bits (84), Expect = 0.003
 Identities = 27/133 (20%), Positives = 48/133 (36%), Gaps = 16/133 (12%)

Query: 106 LDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILSSLARLSSLTSLDLSANRL 165
           L L   D+        L  L +L  +  L    +L +N + +    L++L  L++     
Sbjct: 3   LHLAHKDL------TVLCHLEQLLLVTHL----DLSHNRLRALPPALAALRCLEVLQASD 52

Query: 166 KGSIDIKGPKRLSRLNNLKVFDLSGNLFNN-SILSSLARLSSLRSLLLYDNRLEGSIDVK 224
               ++ G   L RL  L    L  N     + +  L     L  L L  N L     ++
Sbjct: 53  NALENVDGVANLPRLQEL---LLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQ 109

Query: 225 E--FDSLSNLEEL 235
           E   + L ++  +
Sbjct: 110 ERLAEMLPSVSSI 122

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 49.3 bits (116), Expect = 7e-07
 Identities = 33/217 (15%), Positives = 68/217 (31%), Gaps = 8/217 (3%)

Query: 204 LSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLL 263
           L++   +    + +  ++   +   L  +  L      +   E  Q  + L  L      
Sbjct: 18  LANAIKIAAGKSNVTDTVTQAD---LDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQ 74

Query: 264 RVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDARIALN 323
              +     L +      S N L             T        +        + + + 
Sbjct: 75  ITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVL 134

Query: 324 TSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLA 383
              L  I    P     +L   S+ N   +    L  L  L  L   DN +    P  LA
Sbjct: 135 YLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP--LA 192

Query: 384 NMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSD 420
           ++ +L  + + +NQ+       PL + +++  + L++
Sbjct: 193 SLPNLIEVHLKNNQISDVS---PLANTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 47.7 bits (112), Expect = 2e-06
 Identities = 29/238 (12%), Positives = 75/238 (31%), Gaps = 27/238 (11%)

Query: 383 ANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFD 442
             + +   +    + +  +++ +    L  I  L           ++E +   + L   +
Sbjct: 16  PALANAIKIAAGKSNVTDTVTQA---DLDGITTLSAFGTGVT---TIEGVQYLNNLIGLE 69

Query: 443 AENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNE 502
            ++N+I       +           L   +         K +     L+ ++   +   +
Sbjct: 70  LKDNQITDLAPLKN-----------LTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQ 118

Query: 503 EFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILS 562
                 L   + L+ L L  + +     L   ++ Q   +  ++ +    +         
Sbjct: 119 ITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLS----- 173

Query: 563 RLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSN 620
           +LT      N +    P    ++  L  + L NNQ++   P        +L  + L+N
Sbjct: 174 KLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSPLA---NTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.6 bits (96), Expect = 2e-04
 Identities = 27/198 (13%), Positives = 62/198 (31%), Gaps = 15/198 (7%)

Query: 757 LMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLH 816
            + +    +++   +      L  ++ L      +     +Q   LN L  L+L +N + 
Sbjct: 21  AIKIAAGKSNVTDTVTQA--DLDGITTLSAFGTGVTTIEGVQ--YLNNLIGLELKDNQIT 76

Query: 817 GHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQG 876
              P            +          + +           QI +       S       
Sbjct: 77  DLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYL 136

Query: 877 RVPSLLSGLDLSCNRLIGHI---------PPQIGNLTKIQTLNLSHNNLAGPIPSTFSNL 927
            +  + +   L+    + ++            + NL+K+ TL    N ++   P   ++L
Sbjct: 137 DLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP--LASL 194

Query: 928 RNIESLDLSYNKLSWKIP 945
            N+  + L  N++S   P
Sbjct: 195 PNLIEVHLKNNQISDVSP 212

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.2 bits (95), Expect = 3e-04
 Identities = 29/210 (13%), Positives = 61/210 (29%), Gaps = 18/210 (8%)

Query: 736 HLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEV 795
              K+ +   +   T  +   +  L      +   I   V  L+ L  L L  N +    
Sbjct: 25  AAGKSNVTDTV---TQADLDGITTLSAFGTGVT-TIEG-VQYLNNLIGLELKDNQITDLA 79

Query: 796 PIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDP 855
           P++         L  +       I       TL       + + P      +        
Sbjct: 80  PLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLN 139

Query: 856 KKQILESFDFTTKSITYTYQGRVPSL---------LSGLDLSCNRLIGHIPPQIGNLTKI 906
           +   +      T     +      S          L+ L    N++    P  + +L  +
Sbjct: 140 QITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP--LASLPNL 197

Query: 907 QTLNLSHNNLAGPIPSTFSNLRNIESLDLS 936
             ++L +N ++   P   +N  N+  + L+
Sbjct: 198 IEVHLKNNQISDVSP--LANTSNLFIVTLT 225

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.0 bits (113), Expect = 7e-07
 Identities = 26/138 (18%), Positives = 48/138 (34%), Gaps = 8/138 (5%)

Query: 580 SSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIW 639
           + + N    + LDL   ++   + E+L        ++  S+N +          L  L  
Sbjct: 12  AQYTNAVRDRELDLRGYKIP--VIENLGATLDQFDAIDFSDNEI--RKLDGFPLLRRLKT 67

Query: 640 LQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSG----KIPRWLGNLTVLRHIIMPKNHI 695
           L +  N               L  L L+NNSL           L +LT L  +  P  + 
Sbjct: 68  LLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNK 127

Query: 696 EGPIPLEFCQLRILQILD 713
           +        ++  +++LD
Sbjct: 128 KHYRLYVIYKVPQVRVLD 145

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.2 bits (98), Expect = 6e-05
 Identities = 9/45 (20%), Positives = 20/45 (44%), Gaps = 1/45 (2%)

Query: 898 PQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSW 942
            Q  N  + + L+L    +   I +  + L   +++D S N++  
Sbjct: 12  AQYTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRK 55

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 48.7 bits (114), Expect = 2e-06
 Identities = 38/304 (12%), Positives = 80/304 (26%), Gaps = 22/304 (7%)

Query: 650 EIPQSLSKCSSLQGLFLSNNSLSGKIPRWLG-------NLTVLRHIIMPKNHIEGPIPLE 702
            +   L +  S++ + LS N++  +  RWL        +L +     +    ++  IP  
Sbjct: 22  SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEA 81

Query: 703 FCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDL 762
              L    +     + +  S  +         +         +                +
Sbjct: 82  LRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKI 141

Query: 763 SYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSC 822
           +       +  +      L  +I   N LE     +  +  Q      S+  LH      
Sbjct: 142 ARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQ------SHRLLHTVKMVQ 195

Query: 823 FDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLL 882
                    +     L   +   V+    +                       G    LL
Sbjct: 196 NGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLL 255

Query: 883 SGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPST-----FSNLRNIESLDLSY 937
           S        ++            +QTL L +N +      T        + ++  L+L+ 
Sbjct: 256 S--ARGAAAVVDAFS--KLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNG 311

Query: 938 NKLS 941
           N+ S
Sbjct: 312 NRFS 315

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 41.0 bits (94), Expect = 6e-04
 Identities = 39/331 (11%), Positives = 94/331 (28%), Gaps = 34/331 (10%)

Query: 537 KQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDG----SIPSSFGNMNFLQFLD 592
           K L+L  ++  + +    + +      +    +S N +       +  +  +   L+  +
Sbjct: 8   KSLKLDAITTEDEKSVFAVLLE--DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAE 65

Query: 593 LSNNQLTGEIPEHLAMGCVSLRSLALSNNNLE---GHMFSRNFNLTNLIWLQLEGNHFVG 649
            S+      + + +      L    L    L        +        +   L  +  + 
Sbjct: 66  FSDIFTG-RVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLE 124

Query: 650 EIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQ---- 705
            +    +      G  ++       + +   N   LR II  +N +E     E+ +    
Sbjct: 125 HLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQS 184

Query: 706 ---------LRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLT 756
                    ++     +  ++ +   L  C +   ++    +   L          +   
Sbjct: 185 HRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPN 244

Query: 757 LMILDLSYNHLNGNIPDRV------DGLSQLSYLILAHNNLEGEVPIQLC-----RLNQL 805
           L  L L+   L+      V           L  L L +N +E +    L      ++  L
Sbjct: 245 LRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDL 304

Query: 806 QLLDLSNNNLHGHIPSCFDNTTLHERYNNGS 836
             L+L+ N          +   +      G 
Sbjct: 305 LFLELNGNRFSEEDDVVDEIREVFSTRGRGE 335

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 40.2 bits (92), Expect = 9e-04
 Identities = 35/294 (11%), Positives = 81/294 (27%), Gaps = 15/294 (5%)

Query: 144 SILSSLARLSSLTSLDLSANRLKGSIDIKGPKRLSRLNNLKVFDLSGNLFNNSILSSLAR 203
           S+ + L    S+  + LS N +         + ++   +L++ + S   F   +   +  
Sbjct: 22  SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDI-FTGRVKDEIPE 80

Query: 204 LSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLL 263
              L    L       ++ + +       +E  + +                        
Sbjct: 81  ALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAK 140

Query: 264 RVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDARIALN 323
                    + +   + P L ++    N                  L             
Sbjct: 141 IARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRP 200

Query: 324 TSFLQIIGESMPSIQYL----SLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLP 379
                ++ E +   Q L       N+     S  L   L    +L+EL + D  L     
Sbjct: 201 EGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGA 260

Query: 380 WCLANM------TSLRILDVSSNQL----IGSISSSPLIHLTSIEDLILSDNHF 423
             + +         L+ L +  N++    + ++ +     +  +  L L+ N F
Sbjct: 261 AAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF 314

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.5 bits (106), Expect = 5e-06
 Identities = 19/117 (16%), Positives = 40/117 (34%), Gaps = 3/117 (2%)

Query: 879 PSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPS-TFSNLRNIESLDLSY 937
           P   SGL  + +  +      +     +  L + +      +       L  + +L +  
Sbjct: 7   PHGSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVK 65

Query: 938 NKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQFATFNESSYEGNPFLCGPPL 994
           + L +  P        L+  ++++N L   +  +  Q  +  E    GNP  C   L
Sbjct: 66  SGLRFVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLHCSCAL 121

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.5 bits (98), Expect = 5e-05
 Identities = 19/134 (14%), Positives = 34/134 (25%)

Query: 577 SIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTN 636
                      L  L + N Q    +      G   LR+L +  + L             
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPR 81

Query: 637 LIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIE 696
           L  L L  N       +++   S  + +   N        RWL          +P+  ++
Sbjct: 82  LSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCALRWLQRWEEEGLGGVPEQKLQ 141

Query: 697 GPIPLEFCQLRILQ 710
                    +    
Sbjct: 142 CHGQGPLAHMPNAS 155

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.5 bits (93), Expect = 2e-04
 Identities = 22/134 (16%), Positives = 45/134 (33%), Gaps = 1/134 (0%)

Query: 650 EIPQSLSKCSSLQGLFLSNNSLSGKIPR-WLGNLTVLRHIIMPKNHIEGPIPLEFCQLRI 708
           +    L    +L  L++ N      +    L  L  LR++ + K+ +    P  F     
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPR 81

Query: 709 LQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLN 768
           L  L++S N +          + ++++ LS N LH               +  +    L 
Sbjct: 82  LSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCALRWLQRWEEEGLGGVPEQKLQ 141

Query: 769 GNIPDRVDGLSQLS 782
            +    +  +   S
Sbjct: 142 CHGQGPLAHMPNAS 155

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 45.6 bits (106), Expect = 8e-06
 Identities = 30/149 (20%), Positives = 50/149 (33%), Gaps = 3/149 (2%)

Query: 577 SIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTN 636
            IP           L L++N+L     + L      L  L L  N L G   +     ++
Sbjct: 22  EIPRDIPLH--TTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASH 79

Query: 637 LIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIE 696
           +  LQL  N       +       L+ L L +N +S  +P    +L  L  + +  N   
Sbjct: 80  IQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139

Query: 697 GPIPLEFCQLRILQILDISDNNISGSLPS 725
               L +     L+   ++        PS
Sbjct: 140 CNCHLAWF-AEWLRKKSLNGGAARCGAPS 167

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 42.1 bits (97), Expect = 1e-04
 Identities = 37/179 (20%), Positives = 68/179 (37%), Gaps = 9/179 (5%)

Query: 591 LDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNF-NLTNLIWLQLEGNHFVG 649
           +D +   L  EIP  + +       L L++N L        F  L +L+ L+L+ N   G
Sbjct: 13  VDCTGRGLK-EIPRDIPL---HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTG 68

Query: 650 EIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRIL 709
             P +    S +Q L L  N +     +    L  L+ + +  N I   +P  F  L  L
Sbjct: 69  IEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSL 128

Query: 710 QILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLN 768
             L+++ N  + +    +    + +  L+        + G       + I DL ++   
Sbjct: 129 TSLNLASNPFNCNCHLAWFAEWLRKKSLNGG----AARCGAPSKVRDVQIKDLPHSEFK 183

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 39.4 bits (90), Expect = 0.001
 Identities = 27/177 (15%), Positives = 58/177 (32%), Gaps = 6/177 (3%)

Query: 656 SKCS-SLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQL-RILQILD 713
           + C      +  +   L  +IPR +        +++  N +              L  L+
Sbjct: 4   AMCHCEGTTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLE 60

Query: 714 ISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPD 773
           +  N ++G  P+ ++     Q          ++    F     L  L+L  N ++  +P 
Sbjct: 61  LKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPG 120

Query: 774 RVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHE 830
             + L+ L+ L LA N       +        +   L+        PS   +  + +
Sbjct: 121 SFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRK-KSLNGGAARCGAPSKVRDVQIKD 176

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 42.7 bits (99), Expect = 7e-05
 Identities = 35/188 (18%), Positives = 69/188 (36%), Gaps = 19/188 (10%)

Query: 757 LMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLH 816
            M   L   ++   +      L Q++ L      ++    ++   LN L  ++ SNN L 
Sbjct: 20  KMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKSIDGVE--YLNNLTQINFSNNQLT 75

Query: 817 GHIP-----------SCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDF 865
              P              +         N ++L         +  +D       L   + 
Sbjct: 76  DITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLEL 135

Query: 866 TTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFS 925
           ++ +I+        + L  L+ S N++    P  + NLT ++ L++S N ++    S  +
Sbjct: 136 SSNTISDISALSGLTSLQQLNFSSNQVTDLKP--LANLTTLERLDISSNKVSD--ISVLA 191

Query: 926 NLRNIESL 933
            L N+ESL
Sbjct: 192 KLTNLESL 199

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.7 bits (86), Expect = 0.004
 Identities = 28/188 (14%), Positives = 63/188 (33%), Gaps = 5/188 (2%)

Query: 204 LSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLL 263
           L+     +L    +  ++   +   L  +  L      I + +  +  + L ++++ +  
Sbjct: 17  LAEKMKTVLGKTNVTDTVSQTD---LDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQ 73

Query: 264 RVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDARIALN 323
              I     L + +    + N +         T  T    F +  +  +   +   +   
Sbjct: 74  LTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRL 133

Query: 324 TSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLA 383
                 I +        SL   + S+N  T  + L  L  L+ L ++ N +       LA
Sbjct: 134 ELSSNTISDISALSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDISSNKVSD--ISVLA 191

Query: 384 NMTSLRIL 391
            +T+L  L
Sbjct: 192 KLTNLESL 199

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.8 bits (92), Expect = 4e-04
 Identities = 18/121 (14%), Positives = 41/121 (33%), Gaps = 7/121 (5%)

Query: 611 VSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNS 670
            S ++L L     +  + +        + L    +     +         L  L LSNN 
Sbjct: 22  GSQQALDLKGLRSDPDLVA----QNIDVVLNR-RSSMAATLRIIEENIPELLSLNLSNNR 76

Query: 671 LSGK--IPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYD 728
           L     +   +     L+ + +  N ++    L+  +   L+ L +  N++S +      
Sbjct: 77  LYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQST 136

Query: 729 F 729
           +
Sbjct: 137 Y 137

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (93), Expect = 5e-04
 Identities = 28/214 (13%), Positives = 52/214 (24%), Gaps = 4/214 (1%)

Query: 756 TLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNL 815
             + L      L         G   L  + ++ N++   +   +                
Sbjct: 30  NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 89

Query: 816 HGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQ 875
           +    +      L        S          +  +    K  +    +    +I     
Sbjct: 90  NLLYINPEAFQNLPNLQYLLISNTGI-KHLPDVHKIHSLQKVLLDIQDNINIHTIERNSF 148

Query: 876 GRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDL 935
             +      L L+ N +              +     +NNL       F        LD+
Sbjct: 149 VGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDI 208

Query: 936 SYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIP 969
           S  ++     Y L  L  L   S    NL  K+P
Sbjct: 209 SRTRIHSLPSYGLENLKKLRARST--YNLK-KLP 239

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (92), Expect = 7e-04
 Identities = 28/212 (13%), Positives = 62/212 (29%), Gaps = 4/212 (1%)

Query: 386 TSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAEN 445
            +   L     + +  I          +E + +S N     I  +   N  +L     E 
Sbjct: 29  RNAIELRFVLTK-LRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 87

Query: 446 NEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFP 505
                 I        PN Q   +  S+     +     +++   +      +I ++    
Sbjct: 88  ANNLLYINPEAFQNLPNLQYLLI--SNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIER 145

Query: 506 NWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLT 565
           N  +  + +   L L  + +        +  +   L     NN    +P ++    S   
Sbjct: 146 NSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSD-NNNLEELPNDVFHGASGPV 204

Query: 566 VFNISMNALDGSIPSSFGNMNFLQFLDLSNNQ 597
           + +IS   +         N+  L+     N +
Sbjct: 205 ILDISRTRIHSLPSYGLENLKKLRARSTYNLK 236

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (92), Expect = 8e-04
 Identities = 25/230 (10%), Positives = 58/230 (25%), Gaps = 4/230 (1%)

Query: 710 QILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNG 769
           ++    ++ ++  +PS        ++      L   +++G F     L  +++S N +  
Sbjct: 11  RVFLCQESKVT-EIPSDL-PRNAIELRFVLTKLRV-IQKGAFSGFGDLEKIEISQNDVLE 67

Query: 770 NIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLH 829
            I   V       + I                 N   L  L  +N               
Sbjct: 68  VIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSL 127

Query: 830 ERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSC 889
           ++            +      + +  +  IL   +       +        L        
Sbjct: 128 QKVLLDIQDNINIHTIERNSFVGLSFESVIL-WLNKNGIQEIHNCAFNGTQLDELNLSDN 186

Query: 890 NRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNK 939
           N L           +    L++S   +         NL+ + +      K
Sbjct: 187 NNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK 236

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.5 bits (90), Expect = 0.001
 Identities = 34/219 (15%), Positives = 68/219 (31%), Gaps = 7/219 (3%)

Query: 577 SIPSSFGNMNFLQFLDLSNNQLTGEIPEHLA-MGCVSLRSLALSNNNLEGHMFSRNFNLT 635
            IPS          L     +L        +  G +    ++ ++          +    
Sbjct: 22  EIPSDLPRN--AIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPK 79

Query: 636 NLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPR--WLGNLTVLRHIIMPKN 693
                  + N+ +   P++     +LQ L +SN  +              VL  I    N
Sbjct: 80  LHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNIN 139

Query: 694 HIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFN 753
                            IL ++ N I       ++   +++++LS N    +L    F  
Sbjct: 140 IHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHG 199

Query: 754 CLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLE 792
               +ILD+S   ++      ++ L +L        NL+
Sbjct: 200 ASGPVILDISRTRIHSLPSYGLENLKKLRARST--YNLK 236

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Length = 198

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

 Score = 38.1 bits (87), Expect = 0.002
 Identities = 31/165 (18%), Positives = 58/165 (35%), Gaps = 10/165 (6%)

Query: 634 LTNLIWLQLEGNHFVGEIP------QSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRH 687
             +++  + E     G IP       +LS   + + L LS N++  KI   L  +  LR 
Sbjct: 17  RKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIE-KIS-SLSGMENLRI 74

Query: 688 IIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLK 747
           + + +N I+    L+               N   SL      V +  +++S N +    +
Sbjct: 75  LSLGRNLIKKIENLDAVA--DTLEELWISYNQIASLSGIEKLVNLRVLYMSNNKITNWGE 132

Query: 748 EGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLE 792
                    L  L L+ N L  +  +          ++    NL+
Sbjct: 133 IDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLK 177

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	1077
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	100.0
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	100.0
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	100.0
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	100.0
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	100.0
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	100.0
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	100.0
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	100.0
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	100.0
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	100.0
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.96
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.95
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.95
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.95
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.93
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.93
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.92
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.92
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.91
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.9
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.9
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.89
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.88
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.86
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.86
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.85
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.84
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.75
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.73
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.71
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.67
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.67
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.63
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.61
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.59
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	99.03
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.86
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.84
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	98.81
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	98.51

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=100.00  E-value=0  Score=273.61  Aligned_cols=297  Identities=28%  Similarity=0.411  Sum_probs=169.8

Q ss_pred             CCCCHHHHHHHHHCHHHCCCCCCCCCCCCCCCCCCCCC--CCCCEEECCCC--CCEEEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf             44748999999820000038877656887899998875--64411746998--946999827766676322343325668
Q 001439           25 EGCLNHERFALLQLKLFFIDPYNYLLDWVDDEGATDCC--QWERVSCNNTM--GRVVVLDLSQTHRGEYWYLNASLFTPF  100 (1077)
Q Consensus        25 ~~~~~~~~~all~~k~~~~~~~~~~~~w~~~~~~~~~c--~w~gv~c~~~~--~~v~~l~l~~~~~~~~~~~~~~~~~~l  100 (1077)
                      ..|+++||+||++||+++.+|. .+++|.. +  +|||  .|+||+|+...  +||+.++|++....+...+. ..    
T Consensus         1 ~~c~~~e~~aLl~~k~~~~~~~-~l~sW~~-~--~d~C~~~w~gv~C~~~~~~~~v~~L~L~~~~l~g~~~lp-~~----   71 (313)
T d1ogqa_           1 ELCNPQDKQALLQIKKDLGNPT-TLSSWLP-T--TDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIP-SS----   71 (313)
T ss_dssp             CCSCHHHHHHHHHHHHHTTCCG-GGTTCCT-T--SCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECC-GG----
T ss_pred             CCCCHHHHHHHHHHHHHCCCCC-CCCCCCC-C--CCCCCCCCCCEEEECCCCCEEEEEEECCCCCCCCCCCCC-HH----
T ss_conf             9989899999999999779998-6778899-9--999889488969748999479889989899888888798-47----


Q ss_pred             CCCCEEECCCCCCCCCCCCHHHHHCCCCCCCCEEECCC-CCCCCHHHHHHHCCCCCCEEECCCCCCCCCCCCCCHHHCCC
Q ss_conf             67767648999888641001333203899986995899-97980136875226998888489996888658751011049
Q 001439          101 QQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVG-NLFNNSILSSLARLSSLTSLDLSANRLKGSIDIKGPKRLSR  179 (1077)
Q Consensus       101 ~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~Ls~-n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~  179 (1077)
                                              ++++++|++|+|++ |.+.+.+|..++++++|++|++++|++.+..+    ..+..
T Consensus        72 ------------------------l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~----~~~~~  123 (313)
T d1ogqa_          72 ------------------------LANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIP----DFLSQ  123 (313)
T ss_dssp             ------------------------GGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECC----GGGGG
T ss_pred             ------------------------HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCC----CCCCC
T ss_conf             ------------------------84675335202026543330024311454200110203564344332----22220


Q ss_pred             CCCCCEEECCCCCCCCHHHHHHHCCCCCCEEECCCCCCCCCCCHHHHHCCCCC-CEEECCCCCCCCCCHHHHCCCCCCCC
Q ss_conf             99986997899878951047542067885787578878897574433002666-26506778679874021103775665
Q 001439          180 LNNLKVFDLSGNLFNNSILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNL-EELDMSYNEIDNFEVPQACSGLRKLS  258 (1077)
Q Consensus       180 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L-~~L~Ls~n~l~~~~~~~~~~~l~~L~  258 (1077)
                      +.+|++++++.|.+...+|..+.+++.|+.+++++|.+.+.++ ..+..+.++ +.++++.|+++... +..+..+.   
T Consensus       124 ~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip-~~~~~l~~l~~~l~~~~n~l~~~~-~~~~~~l~---  198 (313)
T d1ogqa_         124 IKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP-DSYGSFSKLFTSMTISRNRLTGKI-PPTFANLN---  198 (313)
T ss_dssp             CTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECC-GGGGCCCTTCCEEECCSSEEEEEC-CGGGGGCC---
T ss_pred             HHHHCCCCCCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCC---
T ss_conf             1110011112245555685122067400000023553356203-121443112323102246435332-43322222---


Q ss_pred             EEEECCCCCCCCCHHHHHCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf             44301345678402334208999854650446755455333356776676543771401475520316899730189975
Q 001439          259 YLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDARIALNTSFLQIIGESMPSIQ  338 (1077)
Q Consensus       259 ~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~~l~~L~  338 (1077)
                                              ...+++.                           .+  ...+..+..... ++.++
T Consensus       199 ------------------------~~~l~l~---------------------------~~--~~~~~~~~~~~~-~~~l~  224 (313)
T d1ogqa_         199 ------------------------LAFVDLS---------------------------RN--MLEGDASVLFGS-DKNTQ  224 (313)
T ss_dssp             ------------------------CSEEECC---------------------------SS--EEEECCGGGCCT-TSCCS
T ss_pred             ------------------------CCCCCCC---------------------------CC--CCCCCCCCCCCC-CCCCC
T ss_conf             ------------------------2233333---------------------------34--332222222222-22211


Q ss_pred             EEECCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEEC
Q ss_conf             77234575888854555565588774679835875789740311079987499367974543237863337787655642
Q 001439          339 YLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLIL  418 (1077)
Q Consensus       339 ~L~L~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L  418 (1077)
                      .+++.++.+.+..+    .+..+++|+.|++++|.+++.+|..++++++|++|++++|+++|.+|  .+.++++|+.+++
T Consensus       225 ~l~~~~~~l~~~~~----~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP--~~~~L~~L~~l~l  298 (313)
T d1ogqa_         225 KIHLAKNSLAFDLG----KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP--QGGNLQRFDVSAY  298 (313)
T ss_dssp             EEECCSSEECCBGG----GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECC--CSTTGGGSCGGGT
T ss_pred             CCCCCCCCCCCCCC----CCCCCCCCCCCCCCCCEECCCCCHHHHCCCCCCEEECCCCCCCCCCC--CCCCCCCCCHHHH
T ss_conf             12222222222222----22245544444476570666087688479999989795883516689--8666799897886


Q ss_pred             CCCEE
Q ss_conf             88732
Q 001439          419 SDNHF  423 (1077)
Q Consensus       419 ~~n~l  423 (1077)
                      .+|+.
T Consensus       299 ~~N~~  303 (313)
T d1ogqa_         299 ANNKC  303 (313)
T ss_dssp             CSSSE
T ss_pred             CCCCC
T ss_conf             88950

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=100.00  E-value=1.4e-45  Score=247.29  Aligned_cols=258  Identities=33%  Similarity=0.558  Sum_probs=210.7

Q ss_pred             CCCEEECCCCCCCC--CCCCCCCCCCCCCEEECCC-CCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf             99689841685888--8984435878765898778-81247897012589887799424774776799988876325898
Q 001439          660 SLQGLFLSNNSLSG--KIPRWLGNLTVLRHIIMPK-NHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVH  736 (1077)
Q Consensus       660 ~L~~L~l~~n~l~~--~~p~~l~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~  736 (1077)
                      .++.|+++++.+.+  .+|..++++++|++|++++ |.+.|.+|..+.++++|++|++++|.+.+..             
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~-------------  117 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAI-------------  117 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEEC-------------
T ss_pred             EEEEEECCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCC-------------
T ss_conf             9889989899888888798478467533520202654333002431145420011020356434433-------------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHCCCCCCC-CEEECCCCCC
Q ss_conf             058735432585630254355275036665888899322499888889844751654583100499999-8997868847
Q 001439          737 LSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQL-QLLDLSNNNL  815 (1077)
Q Consensus       737 l~~n~~~~~i~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L-~~L~Ls~N~l  815 (1077)
                                +. .+..+..|+.+++++|.+.+.+|..+..++.++.+++++|.+.+.+|..+..+..+ +.+++++|++
T Consensus       118 ----------~~-~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l  186 (313)
T d1ogqa_         118 ----------PD-FLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRL  186 (313)
T ss_dssp             ----------CG-GGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEE
T ss_pred             ----------CC-CCCCHHHHCCCCCCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             ----------22-2220111001111224555568512206740000002355335620312144311232310224643


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCEEECCCCCEEECCCCCCCCCCEEECCCCCCCCC
Q ss_conf             87789551257521113689999876531233188767942233220010036511001367578786487778957898
Q 001439          816 HGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGH  895 (1077)
Q Consensus       816 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~  895 (1077)
                      ++..|..+.++.                                                      ...++++++...+.
T Consensus       187 ~~~~~~~~~~l~------------------------------------------------------~~~l~l~~~~~~~~  212 (313)
T d1ogqa_         187 TGKIPPTFANLN------------------------------------------------------LAFVDLSRNMLEGD  212 (313)
T ss_dssp             EEECCGGGGGCC------------------------------------------------------CSEEECCSSEEEEC
T ss_pred             CCCCCCCCCCCC------------------------------------------------------CCCCCCCCCCCCCC
T ss_conf             533243322222------------------------------------------------------22333333433222


Q ss_pred             CCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCC
Q ss_conf             94132364558656586886998897255698879867688871754388762279976668722462633488310013
Q 001439          896 IPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQF  975 (1077)
Q Consensus       896 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~  975 (1077)
                      +|..+..+++++.+++++|.+++.+| .++.+++|+.|+|++|+++|.+|..+..+++|++|++++|+++|.+|+ +..+
T Consensus       213 ~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~~~L  290 (313)
T d1ogqa_         213 ASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNL  290 (313)
T ss_dssp             CGGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-STTG
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCEECCCCCHHHHCCCCCCEEECCCCCCCCCCCC-CCCC
T ss_conf             22222222221112222222222222-222455444444765706660876884799999897958835166898-6667


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             7777444567878979999899
Q 001439          976 ATFNESSYEGNPFLCGPPLPIC  997 (1077)
Q Consensus       976 ~~~~~~~~~~N~~~C~~~~~~~  997 (1077)
                      ..++.+++.||+.+||.|++.|
T Consensus       291 ~~L~~l~l~~N~~l~g~plp~c  312 (313)
T d1ogqa_         291 QRFDVSAYANNKCLCGSPLPAC  312 (313)
T ss_dssp             GGSCGGGTCSSSEEESTTSSCC
T ss_pred             CCCCHHHHCCCCCCCCCCCCCC
T ss_conf             9989788688950019898898

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=100.00  E-value=1.1e-38  Score=211.54  Aligned_cols=76  Identities=26%  Similarity=0.364  Sum_probs=38.2

Q ss_pred             CCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECC
Q ss_conf             78648777895789894132364558656586886998897255698879867688871754388762279976668722
Q 001439          881 LLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVA  960 (1077)
Q Consensus       881 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls  960 (1077)
                      .++.|++++|++++..  .+..+++|+.|++++|++++ ++ .++++++|+.|++++|++++.+|  +.++++|+.|+++
T Consensus       308 ~l~~L~ls~n~l~~l~--~l~~l~~L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~  381 (384)
T d2omza2         308 NLTYLTLYFNNISDIS--PVSSLTKLQRLFFANNKVSD-VS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLN  381 (384)
T ss_dssp             TCSEEECCSSCCSCCG--GGGGCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECC
T ss_pred             CCCEEECCCCCCCCCC--CCCCCCCCCEEECCCCCCCC-CH-HHCCCCCCCEEECCCCCCCCCHH--HCCCCCCCEEECC
T ss_conf             4676777788778984--53668988989898998999-74-67089999989897995899800--0039999996397


Q ss_pred             CC
Q ss_conf             46
Q 001439          961 YN  962 (1077)
Q Consensus       961 ~N  962 (1077)
                      +|
T Consensus       382 ~N  383 (384)
T d2omza2         382 DQ  383 (384)
T ss_dssp             CE
T ss_pred             CC
T ss_conf             89

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=100.00  E-value=3.3e-37  Score=203.83  Aligned_cols=16  Identities=44%  Similarity=0.642  Sum_probs=5.3

Q ss_pred             CCCCCCEEECCCCCCC
Q ss_conf             6455865658688699
Q 001439          902 NLTKIQTLNLSHNNLA  917 (1077)
Q Consensus       902 ~l~~L~~L~Ls~N~l~  917 (1077)
                      ++++|+.|++++|+++
T Consensus       349 ~l~~L~~L~l~~N~l~  364 (384)
T d2omza2         349 NLTNINWLSAGHNQIS  364 (384)
T ss_dssp             GCTTCCEEECCSSCCC
T ss_pred             CCCCCCEEECCCCCCC
T ss_conf             8999998989799589

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=3.4e-35  Score=193.48  Aligned_cols=268  Identities=22%  Similarity=0.285  Sum_probs=128.4

Q ss_pred             CCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECC
Q ss_conf             98998468858887406765169757599932664787465246587766714345842345699466699999689841
Q 001439          588 LQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLS  667 (1077)
Q Consensus       588 L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~  667 (1077)
                      .+.++-++..++ .+|..++   +.+++|++++|+++...+..|.++++|++|++++|.+....|..|.+++.|+.|+++
T Consensus        12 ~~~~~C~~~~L~-~lP~~l~---~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~   87 (305)
T d1xkua_          12 LRVVQCSDLGLE-KVPKDLP---PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS   87 (305)
T ss_dssp             TTEEECTTSCCC-SCCCSCC---TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CCEEEECCCCCC-CCCCCCC---CCCCEEECCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCEECCC
T ss_conf             999985599988-5198889---997989784991898696576046565231123443445235665279855783156


Q ss_pred             CCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCC
Q ss_conf             68588889844358787658987788124789701258988779942477477679998887632589805873543258
Q 001439          668 NNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLK  747 (1077)
Q Consensus       668 ~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~i~  747 (1077)
                      +|++. .+|..+  ...+..|.+..|.+.+..+..+.....+..++...|.....                      ...
T Consensus        88 ~n~l~-~l~~~~--~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~----------------------~~~  142 (305)
T d1xkua_          88 KNQLK-ELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSS----------------------GIE  142 (305)
T ss_dssp             SSCCS-BCCSSC--CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGG----------------------GBC
T ss_pred             CCCCC-CCCCCH--HHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCC----------------------CCC
T ss_conf             87567-676400--11132321024610234444540133110000123333346----------------------777


Q ss_pred             CCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHCCCCCCCCEEECCCCCCCCCCCCCCCCCC
Q ss_conf             56302543552750366658888993224998888898447516545831004999998997868847877895512575
Q 001439          748 EGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTT  827 (1077)
Q Consensus       748 ~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~  827 (1077)
                      ...|..+++|+.+++++|.+.. +|..+  +++|+.|++++|...+..+..+..++.++.|++++|.+.           
T Consensus       143 ~~~~~~l~~L~~l~l~~n~l~~-l~~~~--~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~-----------  208 (305)
T d1xkua_         143 NGAFQGMKKLSYIRIADTNITT-IPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSIS-----------  208 (305)
T ss_dssp             TTGGGGCTTCCEEECCSSCCCS-CCSSC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCC-----------
T ss_pred             CCCCCCCCCCCCCCCCCCCCCC-CCCCC--CCCCCEEECCCCCCCCCCHHHHHCCCCCCCCCCCCCCCC-----------
T ss_conf             6422345656712034677451-67101--776678989788677888267641341330154455332-----------


Q ss_pred             CCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCEEECCCCCEEECCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf             21113689999876531233188767942233220010036511001367578786487778957898941323645586
Q 001439          828 LHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQ  907 (1077)
Q Consensus       828 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~  907 (1077)
                                                                                        +..+..+.++++|+
T Consensus       209 ------------------------------------------------------------------~~~~~~~~~l~~L~  222 (305)
T d1xkua_         209 ------------------------------------------------------------------AVDNGSLANTPHLR  222 (305)
T ss_dssp             ------------------------------------------------------------------EECTTTGGGSTTCC
T ss_pred             ------------------------------------------------------------------CCCCCCCCCCCCCE
T ss_conf             ------------------------------------------------------------------22345433443322


Q ss_pred             EEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCC------CCCCCCCCEEECCCCCCC
Q ss_conf             5658688699889725569887986768887175438876------227997666872246263
Q 001439          908 TLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQ------LVELNTLAVFSVAYNNLS  965 (1077)
Q Consensus       908 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~------l~~l~~L~~l~ls~N~l~  965 (1077)
                      +|+|++|.++ .+|..|..+++|+.|+|++|+|+......      ...+.+|+.+++++|++.
T Consensus       223 ~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~  285 (305)
T d1xkua_         223 ELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ  285 (305)
T ss_dssp             EEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred             EEECCCCCCC-CCCCCCCCCCCCCEEECCCCCCCCCCHHHCCCCCHHCCCCCCCEEECCCCCCC
T ss_conf             4302554002-46311033467898989898657638100267210021588897889899576

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=5.6e-34  Score=187.21  Aligned_cols=66  Identities=27%  Similarity=0.319  Sum_probs=26.0

Q ss_pred             CCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHCCCCCCCCEEECCCCCCC
Q ss_conf             3025435527503666588889932249988888984475165458310049999989978688478
Q 001439          750 TFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLH  816 (1077)
Q Consensus       750 ~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~  816 (1077)
                      .|.+++.++.|++++|.+++..+..+.++++|++|++++|+++ .+|.++..+++|+.|++++|+++
T Consensus       190 ~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~  255 (305)
T d1xkua_         190 SLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS  255 (305)
T ss_dssp             GGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCC
T ss_pred             HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCC-CCCCCCCCCCCCCEEECCCCCCC
T ss_conf             7641341330154455332223454334433224302554002-46311033467898989898657

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-35  Score=195.73  Aligned_cols=68  Identities=25%  Similarity=0.246  Sum_probs=22.8

Q ss_pred             CCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCC
Q ss_conf             32364558656586886998897255698879867688871754388762279976668722462633
Q 001439          899 QIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSG  966 (1077)
Q Consensus       899 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~  966 (1077)
                      .|.++++|+.+++++|.+++..|..|..+++|+.||+++|++.+..+..+..+++|+++++++|++.+
T Consensus       172 ~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C  239 (284)
T d1ozna_         172 AFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC  239 (284)
T ss_dssp             TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred             HHCCCCCCCHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCC
T ss_conf             65465634131421143466281676653200023333352210000023554656889811998878

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.8e-34  Score=185.97  Aligned_cols=67  Identities=30%  Similarity=0.261  Sum_probs=29.2

Q ss_pred             CCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHCCCCCCCCEEECCCCCCC
Q ss_conf             3025435527503666588889932249988888984475165458310049999989978688478
Q 001439          750 TFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLH  816 (1077)
Q Consensus       750 ~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~  816 (1077)
                      .|.++++|+.+++++|++++..|..|..+++|++|++++|++.+..+..|..+++|+++++++|++.
T Consensus       172 ~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~  238 (284)
T d1ozna_         172 AFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV  238 (284)
T ss_dssp             TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred             HHCCCCCCCHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCC
T ss_conf             6546563413142114346628167665320002333335221000002355465688981199887

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.9e-32  Score=178.37  Aligned_cols=163  Identities=26%  Similarity=0.247  Sum_probs=111.1

Q ss_pred             CCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf             30254355275036665888899322499888889844751654583100499999899786884787789551257521
Q 001439          750 TFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLH  829 (1077)
Q Consensus       750 ~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~  829 (1077)
                      .|.++++|+.|++++|+++.. + .++.+++|++|++++|++++ .+..+..+++|+.|++++|.+....+..+..+.  
T Consensus        50 ~f~~l~~L~~L~L~~N~l~~l-~-~~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~--  124 (266)
T d1p9ag_          50 TLMPYTRLTQLNLDRAELTKL-Q-VDGTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLG--  124 (266)
T ss_dssp             GGTTCTTCCEEECTTSCCCEE-E-CCSCCTTCCEEECCSSCCSS-CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCT--
T ss_pred             HHHCCCCCCCCCCCCCCCCCC-C-CCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCC--
T ss_conf             863456552213566544443-1-11112232111112222211-111212222222222222311011001122221--


Q ss_pred             CCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCEEECCCCCEEECCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf             11368999987653123318876794223322001003651100136757878648777895789894132364558656
Q 001439          830 ERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTL  909 (1077)
Q Consensus       830 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  909 (1077)
                                                                         .++.|++++|.+++..+..+..++.++.+
T Consensus       125 ---------------------------------------------------~l~~L~l~~n~l~~l~~~~~~~l~~l~~l  153 (266)
T d1p9ag_         125 ---------------------------------------------------ELQELYLKGNELKTLPPGLLTPTPKLEKL  153 (266)
T ss_dssp             ---------------------------------------------------TCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred             ---------------------------------------------------CCCCCCCCCCCCCEECCCCCCCCCCCHHC
T ss_conf             ---------------------------------------------------11122124342102212333221110000


Q ss_pred             ECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCC
Q ss_conf             586886998897255698879867688871754388762279976668722462633488
Q 001439          910 NLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIP  969 (1077)
Q Consensus       910 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p  969 (1077)
                      ++++|++++..+..|..+++|+.|||++|+|+ .+|.++..+++|+.+++++|++.+.+.
T Consensus       154 ~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~CdC~  212 (266)
T d1p9ag_         154 SLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNCE  212 (266)
T ss_dssp             ECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSGG
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCEEECCCCCCC-CCCHHHCCCCCCCEEEECCCCCCCCCC
T ss_conf             00015652237200134212423430139785-568667778889999836999878864

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.7e-31  Score=173.43  Aligned_cols=110  Identities=28%  Similarity=0.313  Sum_probs=43.5

Q ss_pred             CCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCC
Q ss_conf             86487778957898941323645586565868869988972556988798676888717543887622799766687224
Q 001439          882 LSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAY  961 (1077)
Q Consensus       882 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~  961 (1077)
                      |+.|++++|.+.+..+..+..+.+++.|++++|.++...+..+..+++|+.+++++|++++..+..+..+++|++|++++
T Consensus       102 L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~  181 (266)
T d1p9ag_         102 LTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQE  181 (266)
T ss_dssp             CCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred             CCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCEEECCC
T ss_conf             22222222311011001122221111221243421022123332211100000001565223720013421242343013


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             6263348831001377774445678789799
Q 001439          962 NNLSGKIPERAAQFATFNESSYEGNPFLCGP  992 (1077)
Q Consensus       962 N~l~~~~p~~~~~~~~~~~~~~~~N~~~C~~  992 (1077)
                      |.++ .+|.....+..+..+.+.||||.|+|
T Consensus       182 N~L~-~lp~~~~~~~~L~~L~L~~Np~~CdC  211 (266)
T d1p9ag_         182 NSLY-TIPKGFFGSHLLPFAFLHGNPWLCNC  211 (266)
T ss_dssp             SCCC-CCCTTTTTTCCCSEEECCSCCBCCSG
T ss_pred             CCCC-CCCHHHCCCCCCCEEEECCCCCCCCC
T ss_conf             9785-56866777888999983699987886

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.96  E-value=6.3e-25  Score=140.61  Aligned_cols=55  Identities=31%  Similarity=0.487  Sum_probs=26.2

Q ss_pred             CCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCC
Q ss_conf             455865658688699889725569887986768887175438876227997666872246263
Q 001439          903 LTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLS  965 (1077)
Q Consensus       903 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~  965 (1077)
                      +++|++|+|++|.++ .+|..   +++|+.|+|++|+|+ .+|..   +++|+.|++++|+++
T Consensus       283 ~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~L~~N~L~-~l~~~---~~~L~~L~L~~N~L~  337 (353)
T d1jl5a_         283 PPSLEELNVSNNKLI-ELPAL---PPRLERLIASFNHLA-EVPEL---PQNLKQLHVEYNPLR  337 (353)
T ss_dssp             CTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS
T ss_pred             CCCCCEEECCCCCCC-CCCCC---CCCCCEEECCCCCCC-CCCCC---CCCCCEEECCCCCCC
T ss_conf             898898979799168-35665---487998989999687-54532---288898987699189

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.95  E-value=1.9e-24  Score=138.20  Aligned_cols=69  Identities=29%  Similarity=0.508  Sum_probs=47.8

Q ss_pred             CCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf             78786487778957898941323645586565868869988972556988798676888717543887622799766687
Q 001439          879 PSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFS  958 (1077)
Q Consensus       879 ~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~  958 (1077)
                      +..|++|+|++|+++ .+|..   +++|+.|+|++|+|+ .+|..   +++|+.|++++|+|+ .+|...   .+|+.|.
T Consensus       283 ~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~L~~N~L~-~l~~~---~~~L~~L~L~~N~L~-~lp~~~---~~L~~L~  350 (353)
T d1jl5a_         283 PPSLEELNVSNNKLI-ELPAL---PPRLERLIASFNHLA-EVPEL---PQNLKQLHVEYNPLR-EFPDIP---ESVEDLR  350 (353)
T ss_dssp             CTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-SCCCCC---TTCCEEE
T ss_pred             CCCCCEEECCCCCCC-CCCCC---CCCCCEEECCCCCCC-CCCCC---CCCCCEEECCCCCCC-CCCCCC---CCCCEEE
T ss_conf             898898979799168-35665---487998989999687-54532---288898987699189-777652---6567128


Q ss_pred             C
Q ss_conf             2
Q 001439          959 V  959 (1077)
Q Consensus       959 l  959 (1077)
                      +
T Consensus       351 ~  351 (353)
T d1jl5a_         351 M  351 (353)
T ss_dssp             C
T ss_pred             C
T ss_conf             9

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=4.3e-30  Score=167.20  Aligned_cols=114  Identities=23%  Similarity=0.225  Sum_probs=56.0

Q ss_pred             CCCEEECCCCCCCCCCCCHHHHHCCCCCCCCEEECCCCCCCCH----HHHHHHCCCCCCEEECCCCCCCCCCCCCCHHHC
Q ss_conf             7767648999888641001333203899986995899979801----368752269988884899968886587510110
Q 001439          102 QLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNS----ILSSLARLSSLTSLDLSANRLKGSIDIKGPKRL  177 (1077)
Q Consensus       102 ~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l  177 (1077)
                      +|++||++++++++..-.   +.+..+++++.|+|++|.+++.    +...+..+++|++||+++|.+.+.....+...+
T Consensus         3 ~l~~ld~~~~~i~~~~~~---~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l   79 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWA---ELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGL   79 (460)
T ss_dssp             EEEEEEEESCCCCHHHHH---HHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTT
T ss_pred             CCCEEEEECCCCCHHHHH---HHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHH
T ss_conf             877798208958868999---99976779999982899998899999999985399988897959859728999999998


Q ss_pred             C-CCCCCCEEECCCCCCCCHH----HHHHHCCCCCCEEECCCCCCC
Q ss_conf             4-9999869978998789510----475420678857875788788
Q 001439          178 S-RLNNLKVFDLSGNLFNNSI----LSSLARLSSLRSLLLYDNRLE  218 (1077)
Q Consensus       178 ~-~l~~L~~L~Ls~n~l~~~~----~~~l~~l~~L~~L~L~~n~l~  218 (1077)
                      . ...+|++|++++|.+++..    +..+..+++|++|++++|.+.
T Consensus        80 ~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~  125 (460)
T d1z7xw1          80 QTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLG  125 (460)
T ss_dssp             CSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCH
T ss_pred             HCCCCCCCEEECCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCH
T ss_conf             4378877887788877543221012110000343200244433202

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=3.8e-28  Score=157.22  Aligned_cols=114  Identities=17%  Similarity=0.166  Sum_probs=49.7

Q ss_pred             CCCEEECCCCCCCCHH-HHHHHCCCCCCEEECCCCCCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCHHHHHHHC-----
Q ss_conf             9869958999798013-6875226998888489996888658751011049999869978998789510475420-----
Q 001439          130 NLKMLNLVGNLFNNSI-LSSLARLSSLTSLDLSANRLKGSIDIKGPKRLSRLNNLKVFDLSGNLFNNSILSSLAR-----  203 (1077)
Q Consensus       130 ~L~~L~Ls~n~l~~~~-~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~-----  203 (1077)
                      +|+.||++++++++.. ...+..+++++.|+|++|.++......++..+..+++|++|++++|.++......+..     
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~   82 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP   82 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred             CCCEEEEECCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHCC
T ss_conf             87779820895886899999976779999982899998899999999985399988897959859728999999998437


Q ss_pred             CCCCCEEECCCCCCCCCCC---HHHHHCCCCCCEEECCCCCCC
Q ss_conf             6788578757887889757---443300266626506778679
Q 001439          204 LSSLRSLLLYDNRLEGSID---VKEFDSLSNLEELDMSYNEID  243 (1077)
Q Consensus       204 l~~L~~L~L~~n~l~~~~~---~~~l~~l~~L~~L~Ls~n~l~  243 (1077)
                      ..+|++|++++|.++....   ...+..+++|++|++++|.+.
T Consensus        83 ~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~  125 (460)
T d1z7xw1          83 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLG  125 (460)
T ss_dssp             TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCH
T ss_pred             CCCCCEEECCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCH
T ss_conf             8877887788877543221012110000343200244433202

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=9.1e-25  Score=139.79  Aligned_cols=79  Identities=20%  Similarity=0.054  Sum_probs=39.7

Q ss_pred             CCCEEECCCCCCCCCCCCCCCCCCCCC-EEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEC
Q ss_conf             786487778957898941323645586-5658688699889725569887986768887175438876227997666872
Q 001439          881 LLSGLDLSCNRLIGHIPPQIGNLTKIQ-TLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSV  959 (1077)
Q Consensus       881 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~-~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~l  959 (1077)
                      .++.+++++|+++...+..+. ...++ .+++++|.++...+..|.++++|+.|++++|+++...+..|.+++.|+.+++
T Consensus       154 ~l~~L~l~~n~l~~i~~~~~~-~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~  232 (242)
T d1xwdc1         154 ESVILWLNKNGIQEIHNCAFN-GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST  232 (242)
T ss_dssp             SCEEEECCSSCCCEECTTTTT-TCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSE
T ss_pred             CCEEEECCCCCCCCCCCCCCC-CHHHHCCCCCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCCCCC
T ss_conf             100122001233332222222-0111012123543246424788668999998989799289459779737713414767


Q ss_pred             C
Q ss_conf             2
Q 001439          960 A  960 (1077)
Q Consensus       960 s  960 (1077)
                      .
T Consensus       233 ~  233 (242)
T d1xwdc1         233 Y  233 (242)
T ss_dssp             E
T ss_pred             C
T ss_conf             8

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.93  E-value=2.3e-25  Score=142.88  Aligned_cols=180  Identities=22%  Similarity=0.272  Sum_probs=120.0

Q ss_pred             CCEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCC-CCHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             52750366658888993224998888898447516545-83100499999899786884787789551257521113689
Q 001439          757 LMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGE-VPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNG  835 (1077)
Q Consensus       757 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~  835 (1077)
                      .+.++.++++++ .+|..+.  +++++|+|++|++++. .+..|..+++|+.|++++|.+.+..+..+..+.        
T Consensus        10 ~~~v~Cs~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~--------   78 (192)
T d1w8aa_          10 GTTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGAS--------   78 (192)
T ss_dssp             TTEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCT--------
T ss_pred             CCEEEEECCCCC-CCCCCCC--CCCCEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCC--------
T ss_conf             999997089967-0298989--78788984898775530200257876272130136322121212221122--------


Q ss_pred             CCCCCCCCCEEECCCCCCCCCCCCCCCEEECCCCCEEECCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCC
Q ss_conf             99987653123318876794223322001003651100136757878648777895789894132364558656586886
Q 001439          836 SSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNN  915 (1077)
Q Consensus       836 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~  915 (1077)
                                                                   .|+.|+|++|++++..|..|.++++|++|+|++|.
T Consensus        79 ---------------------------------------------~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~  113 (192)
T d1w8aa_          79 ---------------------------------------------HIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQ  113 (192)
T ss_dssp             ---------------------------------------------TCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSC
T ss_pred             ---------------------------------------------CCCEEEECCCCCCCCCHHHHHCCCCCCCCCCCCCC
T ss_conf             ---------------------------------------------22101003553443497998079746552457745


Q ss_pred             CCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             99889725569887986768887175438876227997666872246263348831001377774445678789799998
Q 001439          916 LAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQFATFNESSYEGNPFLCGPPLP  995 (1077)
Q Consensus       916 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~~N~~~C~~~~~  995 (1077)
                      |+++.|+.|..+++|++|+|++|.+.+..+..+ -...++...+..|.+.+..|.   .+....-.++..|.+.|.++..
T Consensus       114 l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~-~~~~l~~~~l~~~~~~c~~p~---~l~~~~l~~L~~n~l~C~~~~~  189 (192)
T d1w8aa_         114 ISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAW-FAEWLRKKSLNGGAARCGAPS---KVRDVQIKDLPHSEFKCSSENS  189 (192)
T ss_dssp             CCEECTTSSTTCTTCCEEECTTCCBCCSGGGHH-HHHHHHHHCCSGGGCBBCSST---TTTTSBGGGSCTTTCCCCCC--
T ss_pred             CCCCCHHHHCCCCCCCCCCCCCCCCCCCCCHHH-HHHHHHHHCCCCCCEEECCCH---HHCCCEEEECCHHHCCCCCCCC
T ss_conf             353597785687533420003644343530277-764235403568982768984---3369886144875575899888


Q ss_pred             C
Q ss_conf             9
Q 001439          996 I  996 (1077)
Q Consensus       996 ~  996 (1077)
                      .
T Consensus       190 ~  190 (192)
T d1w8aa_         190 E  190 (192)
T ss_dssp             -
T ss_pred             C
T ss_conf             8

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=2.2e-24  Score=137.83  Aligned_cols=53  Identities=11%  Similarity=0.003  Sum_probs=29.2

Q ss_pred             EECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCC
Q ss_conf             87778957898941323645586565868869988972556988798676888
Q 001439          885 LDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSY  937 (1077)
Q Consensus       885 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~  937 (1077)
                      +++++|+++...+..|.++++|++|+|++|+++...+..|.++++|+.+++.+
T Consensus       182 ~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~~~  234 (242)
T d1xwdc1         182 NLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYN  234 (242)
T ss_dssp             ECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSEES
T ss_pred             CCCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCCCCCCC
T ss_conf             12354324642478866899999898979928945977973771341476788

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.92  E-value=1.3e-23  Score=133.85  Aligned_cols=74  Identities=22%  Similarity=0.335  Sum_probs=36.2

Q ss_pred             CCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECC
Q ss_conf             78648777895789894132364558656586886998897255698879867688871754388762279976668722
Q 001439          881 LLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVA  960 (1077)
Q Consensus       881 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls  960 (1077)
                      .++.|++++|.+++.  ..+.++++|+.|+|++|.+++. +. ++.+++|+.|++++|+++...|  +..+++|+.++++
T Consensus       152 ~L~~L~l~~n~~~~~--~~l~~l~~L~~L~Ls~n~l~~l-~~-l~~l~~L~~L~Ls~N~lt~i~~--l~~l~~L~~L~ls  225 (227)
T d1h6ua2         152 NLQYLSIGNAQVSDL--TPLANLSKLTTLKADDNKISDI-SP-LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT  225 (227)
T ss_dssp             TCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC-GG-GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEE
T ss_pred             CCCCCCCCCCCCCCC--HHHCCCCCCEECCCCCCCCCCC-HH-HCCCCCCCEEECCCCCCCCCCC--CCCCCCCCEEEEE
T ss_conf             110023333333310--0105646335644588841778-53-4479999989795996899802--0369998989712

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.91  E-value=4.8e-24  Score=136.07  Aligned_cols=18  Identities=17%  Similarity=0.493  Sum_probs=6.4

Q ss_pred             CCCCCCCCEEECCCCCCC
Q ss_conf             236455865658688699
Q 001439          900 IGNLTKIQTLNLSHNNLA  917 (1077)
Q Consensus       900 ~~~l~~L~~L~Ls~N~l~  917 (1077)
                      +.++++|++|+|++|+++
T Consensus       191 l~~l~~L~~L~Ls~N~lt  208 (227)
T d1h6ua2         191 LASLPNLIEVHLKNNQIS  208 (227)
T ss_dssp             GGGCTTCCEEECTTSCCC
T ss_pred             HCCCCCCCEEECCCCCCC
T ss_conf             447999998979599689

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.90  E-value=1.2e-23  Score=133.97  Aligned_cols=85  Identities=28%  Similarity=0.406  Sum_probs=33.8

Q ss_pred             CCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCC
Q ss_conf             86487778957898941323645586565868869988972556988798676888717543887622799766687224
Q 001439          882 LSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAY  961 (1077)
Q Consensus       882 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~  961 (1077)
                      |+.|+|++|.+.+..+..|..+++|++|+|++|++++..|..|.++++|+.|+|++|+|++..|..|..+++|+++++++
T Consensus        56 L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~  135 (192)
T d1w8aa_          56 LVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLAS  135 (192)
T ss_dssp             CCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTT
T ss_pred             EEEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCC
T ss_conf             72130136322121212221122221010035534434979980797465524577453535977856875334200036


Q ss_pred             CCCCC
Q ss_conf             62633
Q 001439          962 NNLSG  966 (1077)
Q Consensus       962 N~l~~  966 (1077)
                      |++.+
T Consensus       136 N~~~~  140 (192)
T d1w8aa_         136 NPFNC  140 (192)
T ss_dssp             CCBCC
T ss_pred             CCCCC
T ss_conf             44343

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=4.5e-23  Score=131.08  Aligned_cols=60  Identities=25%  Similarity=0.297  Sum_probs=30.2

Q ss_pred             CCCCCEEECCCCC-CCCCCCCCCCCCCCCCCCCEEECCCC-CCCCCCHHHHCCCCCCCEEECCCC
Q ss_conf             8997577234575-88885455556558877467983587-578974031107998749936797
Q 001439          334 MPSIQYLSLSNSS-VSNNSRTLDQGLCPLVHLQELHMADN-DLRGSLPWCLANMTSLRILDVSSN  396 (1077)
Q Consensus       334 l~~L~~L~L~~~~-~~~~~~~~~~~l~~l~~L~~L~L~~n-~l~~~~~~~l~~l~~L~~L~L~~n  396 (1077)
                      +++|++|++++|. +++....   .+..+++|++|++++| .+++.....++++++|+.|+++++
T Consensus       174 ~~~L~~L~L~~~~~itd~~~~---~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         174 CPNLVHLDLSDSVMLKNDCFQ---EFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             CTTCSEEECTTCTTCCGGGGG---GGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             CCCCCCCCCCCCCCCCCHHHH---HHCCCCCCCEEECCCCCCCCHHHHHHHHCCCCCCEEEEECC
T ss_conf             222123553223477830333---32135768779899999787378999726999898964488

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.89  E-value=6.5e-22  Score=125.10  Aligned_cols=74  Identities=28%  Similarity=0.414  Sum_probs=36.6

Q ss_pred             CCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECC
Q ss_conf             78648777895789894132364558656586886998897255698879867688871754388762279976668722
Q 001439          881 LLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVA  960 (1077)
Q Consensus       881 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls  960 (1077)
                      .++.+++++|.+++  +..+..+++|+.+++++|.+++..  .+.++++|+.|++++|+++. +| .+..+++|++|+++
T Consensus       135 ~l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~i~--~l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         135 QLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIV--PLAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELF  208 (210)
T ss_dssp             TCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEE
T ss_pred             CCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCEEECCCCCCCC-CH-HHCCCCCCCEEECC
T ss_conf             12221122233345--431000133210013464302564--53678989999897998998-72-11699998999711

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=2.5e-23  Score=132.38  Aligned_cols=13  Identities=15%  Similarity=0.192  Sum_probs=4.9

Q ss_pred             CCCCCCEEECCCC
Q ss_conf             8877467983587
Q 001439          360 PLVHLQELHMADN  372 (1077)
Q Consensus       360 ~l~~L~~L~L~~n  372 (1077)
                      ++++|+.|++.++
T Consensus       223 ~~~~L~~L~l~~~  235 (284)
T d2astb2         223 EIPTLKTLQVFGI  235 (284)
T ss_dssp             GCTTCCEEECTTS
T ss_pred             CCCCCCEEEEECC
T ss_conf             6999898964488

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.86  E-value=3.4e-21  Score=121.38  Aligned_cols=93  Identities=23%  Similarity=0.201  Sum_probs=34.8

Q ss_pred             CCCCCCCCEEECCCCCCCCHHHHH----HHCCCCCCEEECCCCCCCCCCC------CCCHHHCCCCCCCCEEECCCCCCC
Q ss_conf             038999869958999798013687----5226998888489996888658------751011049999869978998789
Q 001439          125 LSRLSNLKMLNLVGNLFNNSILSS----LARLSSLTSLDLSANRLKGSID------IKGPKRLSRLNNLKVFDLSGNLFN  194 (1077)
Q Consensus       125 l~~l~~L~~L~Ls~n~l~~~~~~~----l~~l~~L~~L~Ls~n~l~~~~~------~~~~~~l~~l~~L~~L~Ls~n~l~  194 (1077)
                      +.....++.|+|++|.++......    +...++|+.++++++.......      ..+...+..+++|++|++++|.+.
T Consensus        27 L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~  106 (344)
T d2ca6a1          27 LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFG  106 (344)
T ss_dssp             HHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCC
T ss_pred             HHHCCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf             96389978897849837789999999999858998888887775433454210678799988754777563300001345


Q ss_pred             CHH----HHHHHCCCCCCEEECCCCCC
Q ss_conf             510----47542067885787578878
Q 001439          195 NSI----LSSLARLSSLRSLLLYDNRL  217 (1077)
Q Consensus       195 ~~~----~~~l~~l~~L~~L~L~~n~l  217 (1077)
                      ...    ...+..+++|++|++++|.+
T Consensus       107 ~~~~~~l~~~l~~~~~L~~L~l~~n~l  133 (344)
T d2ca6a1         107 PTAQEPLIDFLSKHTPLEHLYLHNNGL  133 (344)
T ss_dssp             TTTHHHHHHHHHHCTTCCEEECCSSCC
T ss_pred             CCCCCCHHHHHCCCCCCHHEECCCCCC
T ss_conf             543331011100234321000002466

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.86  E-value=2.2e-20  Score=117.22  Aligned_cols=34  Identities=35%  Similarity=0.682  Sum_probs=11.9

Q ss_pred             CCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEC
Q ss_conf             236455865658688699889725569887986768
Q 001439          900 IGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDL  935 (1077)
Q Consensus       900 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L  935 (1077)
                      +.++++|+.|+|++|.++. +| .+..+++|+.|+|
T Consensus       174 l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~L  207 (210)
T d1h6ta2         174 LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLEL  207 (210)
T ss_dssp             GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEE
T ss_pred             CCCCCCCCEEECCCCCCCC-CH-HHCCCCCCCEEEC
T ss_conf             3678989999897998998-72-1169999899971

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.85  E-value=2.6e-20  Score=116.84  Aligned_cols=17  Identities=53%  Similarity=0.749  Sum_probs=5.7

Q ss_pred             CCCCCCCEEECCCCCCC
Q ss_conf             69887986768887175
Q 001439          925 SNLRNIESLDLSYNKLS  941 (1077)
Q Consensus       925 ~~l~~L~~L~Ls~N~l~  941 (1077)
                      +++++|+.|++++|+++
T Consensus       169 ~~l~~L~~L~ls~N~i~  185 (199)
T d2omxa2         169 ANLTTLERLDISSNKVS  185 (199)
T ss_dssp             TTCTTCCEEECCSSCCC
T ss_pred             CCCCCCCEEECCCCCCC
T ss_conf             67998999978799799

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.84  E-value=1.7e-20  Score=117.77  Aligned_cols=100  Identities=16%  Similarity=0.149  Sum_probs=58.9

Q ss_pred             CCCCCCCCCEEECCCCCCCCCCCCHHHHHCCCCCCCCEEECCCCCCCC---H-------HHHHHHCCCCCCEEECCCCCC
Q ss_conf             256686776764899988864100133320389998699589997980---1-------368752269988884899968
Q 001439           96 LFTPFQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNN---S-------ILSSLARLSSLTSLDLSANRL  165 (1077)
Q Consensus        96 ~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~---~-------~~~~l~~l~~L~~L~Ls~n~l  165 (1077)
                      .+.....++.|++++|.+...........+...++|+.++++++....   .       +...+..+++|++|++++|.+
T Consensus        26 ~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i  105 (344)
T d2ca6a1          26 VLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAF  105 (344)
T ss_dssp             HHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCC
T ss_pred             HHHHCCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf             99638997889784983778999999999985899888888777543345421067879998875477756330000134


Q ss_pred             CCCCCCCCHHHCCCCCCCCEEECCCCCCCC
Q ss_conf             886587510110499998699789987895
Q 001439          166 KGSIDIKGPKRLSRLNNLKVFDLSGNLFNN  195 (1077)
Q Consensus       166 ~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~  195 (1077)
                      .......+...+..+++|++|++++|.+..
T Consensus       106 ~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~  135 (344)
T d2ca6a1         106 GPTAQEPLIDFLSKHTPLEHLYLHNNGLGP  135 (344)
T ss_dssp             CTTTHHHHHHHHHHCTTCCEEECCSSCCHH
T ss_pred             CCCCCCCHHHHHCCCCCCHHEECCCCCCCC
T ss_conf             554333101110023432100000246666

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=3.6e-18  Score=105.86  Aligned_cols=112  Identities=22%  Similarity=0.204  Sum_probs=57.1

Q ss_pred             CCCCCCCCEEECCCCCCCCHHHHHHHCCCCCCEEECCCCCCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCHHHHHHHCC
Q ss_conf             03899986995899979801368752269988884899968886587510110499998699789987895104754206
Q 001439          125 LSRLSNLKMLNLVGNLFNNSILSSLARLSSLTSLDLSANRLKGSIDIKGPKRLSRLNNLKVFDLSGNLFNNSILSSLARL  204 (1077)
Q Consensus       125 l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l  204 (1077)
                      +.+...+|+|+|++|.++. ++..+..+++|++|++++|.+...      ..+..+++|++|++++|.++...+..+..+
T Consensus        14 ~~n~~~lr~L~L~~n~I~~-i~~~~~~l~~L~~L~Ls~N~i~~l------~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l   86 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL------DGFPLLRRLKTLLVNNNRICRIGEGLDQAL   86 (162)
T ss_dssp             EECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE------CCCCCCSSCCEEECCSSCCCEECSCHHHHC
T ss_pred             CCCCCCCCEEECCCCCCCC-CCCCCCCCCCCCEEECCCCCCCCC------CCCCCCCCHHHHHCCCCCCCCCCCCCCCCC
T ss_conf             1685748489788997886-576200414599898979978764------774457613064310213457776322334


Q ss_pred             CCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCC
Q ss_conf             788578757887889757443300266626506778679
Q 001439          205 SSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEID  243 (1077)
Q Consensus       205 ~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~  243 (1077)
                      ++|++|++++|.+........+..+++|+++++++|.++
T Consensus        87 ~~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~  125 (162)
T d1a9na_          87 PDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT  125 (162)
T ss_dssp             TTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG
T ss_pred             CCCCCCEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCCC
T ss_conf             534434203000166542110013653206640799634

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=3.4e-18  Score=106.00  Aligned_cols=14  Identities=21%  Similarity=0.313  Sum_probs=4.6

Q ss_pred             CCCCCEEECCCCCC
Q ss_conf             88798676888717
Q 001439          927 LRNIESLDLSYNKL  940 (1077)
Q Consensus       927 l~~L~~L~Ls~N~l  940 (1077)
                      +++|+.|++++|.+
T Consensus       111 l~~L~~L~l~~N~i  124 (162)
T d1a9na_         111 LKSLTYLCILRNPV  124 (162)
T ss_dssp             CTTCCEEECCSSGG
T ss_pred             CCCCCHHHCCCCCC
T ss_conf             65320664079963

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=3.4e-17  Score=100.82  Aligned_cols=87  Identities=18%  Similarity=0.165  Sum_probs=46.3

Q ss_pred             CCCEEECCCCC-CCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEC
Q ss_conf             78648777895-78989413236455865658688699889725569887986768887175438876227997666872
Q 001439          881 LLSGLDLSCNR-LIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSV  959 (1077)
Q Consensus       881 ~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~l  959 (1077)
                      .++.|++++|+ ++...+..|.++++|+.|+|++|+|+.+.|..|..+++|+.|+|++|+|+...+..+.. ..|+.+++
T Consensus        32 ~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~-~~l~~L~L  110 (156)
T d2ifga3          32 NLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQG-LSLQELVL  110 (156)
T ss_dssp             CCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCS-CCCCEEEC
T ss_pred             CCCEEECCCCCCCCCCCCHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCHHHHCC-CCCCCCCC
T ss_conf             65743168986644369212256666672162021247742011124554333322678785157456335-32124335


Q ss_pred             CCCCCCCCC
Q ss_conf             246263348
Q 001439          960 AYNNLSGKI  968 (1077)
Q Consensus       960 s~N~l~~~~  968 (1077)
                      ++|++.+..
T Consensus       111 ~~Np~~C~C  119 (156)
T d2ifga3         111 SGNPLHCSC  119 (156)
T ss_dssp             CSSCCCCCG
T ss_pred             CCCCCCCCC
T ss_conf             798633881

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.67  E-value=2.6e-16  Score=96.26  Aligned_cols=80  Identities=31%  Similarity=0.424  Sum_probs=27.3

Q ss_pred             CEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCC-CCCCCCCCCCEEECCC
Q ss_conf             648777895789894132364558656586886998897255698879867688871754388-7622799766687224
Q 001439          883 SGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIP-YQLVELNTLAVFSVAY  961 (1077)
Q Consensus       883 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~l~ls~  961 (1077)
                      +.|++++|.++ .+|+.++.+++|+.|++++|.+++. | .+..+++|+.|++++|+++.... ..+..+++|+.+++++
T Consensus        23 ~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~l-~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~~~~L~~L~l~~   99 (124)
T d1dcea3          23 THLDLSHNRLR-ALPPALAALRCLEVLQASDNALENV-D-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQG   99 (124)
T ss_dssp             CEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCC-G-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTT
T ss_pred             CEEECCCCCCC-CCHHHHHHHHCCCCCCCCCCCCCCC-C-CCCCCCCCCEEECCCCCCCCCCCCHHHCCCCCCCEEECCC
T ss_conf             98979787168-6521565543135453243211235-7-4123355576888898658888825653799999998979


Q ss_pred             CCCC
Q ss_conf             6263
Q 001439          962 NNLS  965 (1077)
Q Consensus       962 N~l~  965 (1077)
                      |+++
T Consensus       100 N~i~  103 (124)
T d1dcea3         100 NSLC  103 (124)
T ss_dssp             SGGG
T ss_pred             CCCC
T ss_conf             9688

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.67  E-value=5.2e-16  Score=94.71  Aligned_cols=14  Identities=29%  Similarity=0.164  Sum_probs=4.6

Q ss_pred             HCCCCCCEEECCCC
Q ss_conf             00266626506778
Q 001439          227 DSLSNLEELDMSYN  240 (1077)
Q Consensus       227 ~~l~~L~~L~Ls~n  240 (1077)
                      ..+++|+.+++++|
T Consensus        87 ~~~~~L~~L~l~~N  100 (124)
T d1dcea3          87 VSCPRLVLLNLQGN  100 (124)
T ss_dssp             GGCTTCCEEECTTS
T ss_pred             CCCCCCCEEECCCC
T ss_conf             37999999989799

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.63  E-value=2.5e-18  Score=106.65  Aligned_cols=107  Identities=30%  Similarity=0.380  Sum_probs=37.6

Q ss_pred             CCCCCCCCEEECCCCCCCCHHHHHHHCCCCCCEEECCCCCCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCHHHHHHHCC
Q ss_conf             03899986995899979801368752269988884899968886587510110499998699789987895104754206
Q 001439          125 LSRLSNLKMLNLVGNLFNNSILSSLARLSSLTSLDLSANRLKGSIDIKGPKRLSRLNNLKVFDLSGNLFNNSILSSLARL  204 (1077)
Q Consensus       125 l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l  204 (1077)
                      +..+++|++|++++|.++. + +.+..+++|++|++++|.+.. ++    .....+++|++|++++|.++.  ...+.++
T Consensus        44 l~~L~~L~~L~Ls~n~I~~-i-~~l~~l~~L~~L~Ls~N~i~~-i~----~~~~~~~~L~~L~l~~N~i~~--l~~~~~l  114 (198)
T d1m9la_          44 LSTLKACKHLALSTNNIEK-I-SSLSGMENLRILSLGRNLIKK-IE----NLDAVADTLEELWISYNQIAS--LSGIEKL  114 (198)
T ss_dssp             HHHTTTCCEEECSEEEESC-C-CCHHHHTTCCEEECCEEEECS-CS----SHHHHHHHCCEEECSEEECCC--HHHHHHH
T ss_pred             HHCCCCCCEEECCCCCCCC-C-CCCCCCCCCCCHHHCCCCCCC-CC----CCCCCCCCCCCCCCCCCCCCC--CCCCCCC
T ss_conf             7626046151994468998-6-442478253573413534321-00----003322123333333322222--2222222


Q ss_pred             CCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCC
Q ss_conf             788578757887889757443300266626506778
Q 001439          205 SSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYN  240 (1077)
Q Consensus       205 ~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n  240 (1077)
                      ++|+.|++++|.+........+..+++|+.|++++|
T Consensus       115 ~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N  150 (198)
T d1m9la_         115 VNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGN  150 (198)
T ss_dssp             HHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSS
T ss_pred             CCCCCCCCCCCHHCCCCCCCCCCCCCCCCEEECCCC
T ss_conf             234111234102125542212367776302342798

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.61  E-value=2.5e-17  Score=101.54  Aligned_cols=112  Identities=29%  Similarity=0.371  Sum_probs=61.8

Q ss_pred             HHHHHHHCCCCCCEEECCCCCCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCHHHHHHHCCCCCCEEECCCCCCCCCCCH
Q ss_conf             13687522699888848999688865875101104999986997899878951047542067885787578878897574
Q 001439          144 SILSSLARLSSLTSLDLSANRLKGSIDIKGPKRLSRLNNLKVFDLSGNLFNNSILSSLARLSSLRSLLLYDNRLEGSIDV  223 (1077)
Q Consensus       144 ~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~  223 (1077)
                      .++.+++.+++|++|++++|.+.. ++     .+..+++|++|++++|.++. ++.....+++|+.|++++|.+..   .
T Consensus        39 ~l~~sl~~L~~L~~L~Ls~n~I~~-i~-----~l~~l~~L~~L~Ls~N~i~~-i~~~~~~~~~L~~L~l~~N~i~~---l  108 (198)
T d1m9la_          39 KMDATLSTLKACKHLALSTNNIEK-IS-----SLSGMENLRILSLGRNLIKK-IENLDAVADTLEELWISYNQIAS---L  108 (198)
T ss_dssp             CCHHHHHHTTTCCEEECSEEEESC-CC-----CHHHHTTCCEEECCEEEECS-CSSHHHHHHHCCEEECSEEECCC---H
T ss_pred             HHHHHHHCCCCCCEEECCCCCCCC-CC-----CCCCCCCCCCHHHCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCC---C
T ss_conf             024677626046151994468998-64-----42478253573413534321-00003322123333333322222---2


Q ss_pred             HHHHCCCCCCEEECCCCCCCCCCHHHHCCCCCCCCEEEECCC
Q ss_conf             433002666265067786798740211037756654430134
Q 001439          224 KEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLRV  265 (1077)
Q Consensus       224 ~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~~  265 (1077)
                      ..+..+++|+.|++++|+++++.....+..+++|+.|++.++
T Consensus       109 ~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N  150 (198)
T d1m9la_         109 SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGN  150 (198)
T ss_dssp             HHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSS
T ss_pred             CCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCEEECCCC
T ss_conf             222222234111234102125542212367776302342798

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=4.9e-15  Score=89.71  Aligned_cols=111  Identities=17%  Similarity=0.237  Sum_probs=86.6

Q ss_pred             CCEEECCCCCCCCCCCCCCCCCCCCCEEECCCC-CCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECC
Q ss_conf             864877789578989413236455865658688-6998897255698879867688871754388762279976668722
Q 001439          882 LSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHN-NLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVA  960 (1077)
Q Consensus       882 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls  960 (1077)
                      .+.++.+++++. ..|..+..+++|++|++++| .++.+.+..|.++++|+.|++++|+|+...+..|..+++|+.|+++
T Consensus        10 ~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls   88 (156)
T d2ifga3          10 SSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (156)
T ss_dssp             SSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             CCEEEECCCCCC-CCCCCCCCCCCCCEEECCCCCCCCCCCCHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEECC
T ss_conf             996985289976-5860025765657431689866443692122566666721620212477420111245543333226


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             4626334883100137777444567878979999
Q 001439          961 YNNLSGKIPERAAQFATFNESSYEGNPFLCGPPL  994 (1077)
Q Consensus       961 ~N~l~~~~p~~~~~~~~~~~~~~~~N~~~C~~~~  994 (1077)
                      +|+++...+..+ +...+..+.+.+||+.|+|.+
T Consensus        89 ~N~l~~l~~~~~-~~~~l~~L~L~~Np~~C~C~~  121 (156)
T d2ifga3          89 FNALESLSWKTV-QGLSLQELVLSGNPLHCSCAL  121 (156)
T ss_dssp             SSCCSCCCSTTT-CSCCCCEEECCSSCCCCCGGG
T ss_pred             CCCCCCCCHHHH-CCCCCCCCCCCCCCCCCCCHH
T ss_conf             787851574563-353212433579863388117

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.03  E-value=7e-10  Score=63.17  Aligned_cols=45  Identities=11%  Similarity=0.177  Sum_probs=17.2

Q ss_pred             CCCCCCEEECCCCCCCCCCCCCCHHHCCCCCCCCEEECCCCCCCC
Q ss_conf             269988884899968886587510110499998699789987895
Q 001439          151 RLSSLTSLDLSANRLKGSIDIKGPKRLSRLNNLKVFDLSGNLFNN  195 (1077)
Q Consensus       151 ~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~  195 (1077)
                      ..+.|++|++++|.+.......+...+...+.|++|++++|.++.
T Consensus        42 ~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~   86 (167)
T d1pgva_          42 NSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTP   86 (167)
T ss_dssp             TCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCH
T ss_pred             HCCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCCEEEEHHHCCH
T ss_conf             377645401201562156798875310002343300330102145

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.86  E-value=7.3e-09  Score=57.95  Aligned_cols=118  Identities=10%  Similarity=0.084  Sum_probs=67.1

Q ss_pred             CCCCCCCEEECCCC-CCCCCCCCHHHHHCCCCCCCCEEECCCCCCCCHH----HHHHHCCCCCCEEECCCCCCCCCCCCC
Q ss_conf             66867767648999-8886410013332038999869958999798013----687522699888848999688865875
Q 001439           98 TPFQQLESLDLRDN-DIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSI----LSSLARLSSLTSLDLSANRLKGSIDIK  172 (1077)
Q Consensus        98 ~~l~~L~~L~L~~n-~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~----~~~l~~l~~L~~L~Ls~n~l~~~~~~~  172 (1077)
                      ...+.|+.|+|+++ .++.......+..+...++|++|++++|.+++..    ...+...+.|++|++++|.+.+.....
T Consensus        12 ~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~   91 (167)
T d1pgva_          12 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR   91 (167)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred             HCCCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCCEEEEHHHCCHHHHHH
T ss_conf             28999819782799998989999999997637764540120156215679887531000234330033010214599999


Q ss_pred             CHHHCCCCCCCCEEECCCCCCCCH-------HHHHHHCCCCCCEEECCCC
Q ss_conf             101104999986997899878951-------0475420678857875788
Q 001439          173 GPKRLSRLNNLKVFDLSGNLFNNS-------ILSSLARLSSLRSLLLYDN  215 (1077)
Q Consensus       173 ~~~~l~~l~~L~~L~Ls~n~l~~~-------~~~~l~~l~~L~~L~L~~n  215 (1077)
                      +...+...+.|++|++++|.+...       +...+...+.|+.|+++.+
T Consensus        92 l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~  141 (167)
T d1pgva_          92 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA  141 (167)
T ss_dssp             HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred             HHHHHHHCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCEEECCCC
T ss_conf             99999848938987788776888657999999999972998538648688

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.84  E-value=5e-10  Score=63.91  Aligned_cols=125  Identities=24%  Similarity=0.244  Sum_probs=0.0

Q ss_pred             CCCCEEECCCCCCCCCCCCHHHHHCCCCCCCCEEECCCCCCCCHHHHHHHCCCCCCEEECCCCCCCCCCCCCCHHHCCCC
Q ss_conf             67767648999888641001333203899986995899979801368752269988884899968886587510110499
Q 001439          101 QQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILSSLARLSSLTSLDLSANRLKGSIDIKGPKRLSRL  180 (1077)
Q Consensus       101 ~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~l  180 (1077)
                      ...+.|+++.....        ..+..+..+..++...+... .+.....++++|++|++++|+++...+.  +..+..+
T Consensus        22 ~~~~~Ldls~l~~~--------~~l~~~~~~~~l~~~~~~~~-~l~~~~~~~~~L~~L~Ls~N~i~~l~~~--~~~~~~l   90 (162)
T d1koha1          22 GSQQALDLKGLRSD--------PDLVAQNIDVVLNRRSSMAA-TLRIIEENIPELLSLNLSNNRLYRLDDM--SSIVQKA   90 (162)
T ss_dssp             SSSCCBCCCCCSSC--------TTTTTTTCCCCTTSHHHHHH-HHHHHHHHCTTCCCCCCCSSCCCCCSGG--GTHHHHS
T ss_pred             HHHCEEECCCCCCC--------CHHHHCCCHHHCCHHHHHHH-HHHHHHHHCCCCCEEECCCCCCCCCCHH--HHHHHHC
T ss_conf             33086534359898--------21554664011225556766-6078897487878863777666677315--8898658


Q ss_pred             CCCCEEECCCCCCCCHHHHHHHCCCCCCEEECCCCCCCCCCCHHH------HHCCCCCCEEE
Q ss_conf             998699789987895104754206788578757887889757443------30026662650
Q 001439          181 NNLKVFDLSGNLFNNSILSSLARLSSLRSLLLYDNRLEGSIDVKE------FDSLSNLEELD  236 (1077)
Q Consensus       181 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~------l~~l~~L~~L~  236 (1077)
                      ++|+.|++++|.+++...-.......|+.+++++|.+........      +..+++|+.||
T Consensus        91 ~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i~~~~P~L~~LD  152 (162)
T d1koha1          91 PNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIRERFPKLLRLD  152 (162)
T ss_dssp             TTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHHHTTSTTCCEET
T ss_pred             CCCCCCCCCCCCCCCCHHHHHHHCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCEEC
T ss_conf             85610004357213423442220331042664899767676661569999999889978799

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.81  E-value=7.5e-09  Score=57.87  Aligned_cols=43  Identities=23%  Similarity=0.285  Sum_probs=15.9

Q ss_pred             CCCCEEECCC-CCCCCCCCCHHHHHCCCCCCCCEEECCCCCCCC
Q ss_conf             6776764899-988864100133320389998699589997980
Q 001439          101 QQLESLDLRD-NDIAGCVENEGLERLSRLSNLKMLNLVGNLFNN  143 (1077)
Q Consensus       101 ~~L~~L~L~~-n~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~  143 (1077)
                      +.|++|++++ +.++..........+...++|++|++++|.++.
T Consensus        17 ~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~   60 (166)
T d1io0a_          17 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSND   60 (166)
T ss_dssp             TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCH
T ss_pred             CCCCEEECCCCCCCCHHHHHHHHHHHHCCCCCCEEECCCCCCCH
T ss_conf             99868876899998989999999888419825743015896117

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.51  E-value=1e-07  Score=51.99  Aligned_cols=88  Identities=17%  Similarity=0.186  Sum_probs=42.4

Q ss_pred             CCCCCCCCEEECCC-CCCCCHH----HHHHHCCCCCCEEECCCCCCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCHHH-
Q ss_conf             03899986995899-9798013----68752269988884899968886587510110499998699789987895104-
Q 001439          125 LSRLSNLKMLNLVG-NLFNNSI----LSSLARLSSLTSLDLSANRLKGSIDIKGPKRLSRLNNLKVFDLSGNLFNNSIL-  198 (1077)
Q Consensus       125 l~~l~~L~~L~Ls~-n~l~~~~----~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~-  198 (1077)
                      ..+.+.|++|++++ +.++...    ...+...++|++|++++|.+.......+...+...+.++.+++++|.+..... 
T Consensus        13 ~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~   92 (166)
T d1io0a_          13 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL   92 (166)
T ss_dssp             HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred             HHCCCCCCEEECCCCCCCCHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCHHHH
T ss_conf             95599986887689999898999999988841982574301589611778999998775212210121025432201478


Q ss_pred             ---HHHHCCCCCCEEEC
Q ss_conf             ---75420678857875
Q 001439          199 ---SSLARLSSLRSLLL  212 (1077)
Q Consensus       199 ---~~l~~l~~L~~L~L  212 (1077)
                         ..+...+.|+.+++
T Consensus        93 ~l~~~l~~~~~L~~l~L  109 (166)
T d1io0a_          93 ALVEALQSNTSLIELRI  109 (166)
T ss_dssp             HHHHGGGGCSSCCEEEC
T ss_pred             HHHHHHHHCCCCCEEEE
T ss_conf             89999984865247732