Citrus Sinensis ID: 001462
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1074 | 2.2.26 [Sep-21-2011] | |||||||
| Q8H0T9 | 837 | Katanin p80 WD40 repeat-c | no | no | 0.281 | 0.360 | 0.710 | 1e-139 | |
| O61585 | 690 | Katanin p80 WD40 repeat-c | yes | no | 0.285 | 0.444 | 0.529 | 1e-104 | |
| Q9BVA0 | 655 | Katanin p80 WD40 repeat-c | yes | no | 0.271 | 0.445 | 0.474 | 3e-94 | |
| Q6NVM2 | 655 | Katanin p80 WD40 repeat-c | yes | no | 0.281 | 0.461 | 0.483 | 4e-94 | |
| Q4V7Y7 | 655 | Katanin p80 WD40 repeat-c | N/A | no | 0.297 | 0.487 | 0.459 | 1e-93 | |
| Q5ZIU8 | 657 | Katanin p80 WD40 repeat-c | yes | no | 0.264 | 0.432 | 0.470 | 6e-93 | |
| Q8BG40 | 658 | Katanin p80 WD40 repeat-c | yes | no | 0.257 | 0.420 | 0.481 | 1e-92 | |
| Q7ZUV2 | 694 | Katanin p80 WD40 repeat-c | yes | no | 0.272 | 0.422 | 0.468 | 1e-90 | |
| Q8YRI1 | 1526 | Uncharacterized WD repeat | yes | no | 0.264 | 0.186 | 0.324 | 3e-38 | |
| Q8YTC2 | 1258 | Uncharacterized WD repeat | no | no | 0.244 | 0.209 | 0.338 | 4e-35 |
| >sp|Q8H0T9|KTNB1_ARATH Katanin p80 WD40 repeat-containing subunit B1 homolog OS=Arabidopsis thaliana GN=At5g23430 PE=2 SV=3 | Back alignment and function desciption |
|---|
Score = 498 bits (1281), Expect = e-139, Method: Compositional matrix adjust.
Identities = 216/304 (71%), Positives = 260/304 (85%)
Query: 3 KRGYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVD 62
KR YKLQEFVAHSA VNC+ IG+K+ R L+TGG+D KVNLWAIGKP A++SL G SS +D
Sbjct: 4 KRAYKLQEFVAHSAAVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLYGHSSGID 63
Query: 63 SVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDT 122
SV FD++EVLV AGA++G IKLWDLEE+K+VRTLTGH+SNC +V+FHPFGEFFASG +DT
Sbjct: 64 SVTFDASEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDT 123
Query: 123 NLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKF 182
NLKIWDIRKKGCIHTYKGHTRG+N +RFTPDGRWVVSGG DN+VKVWDLTAGKLL +FK
Sbjct: 124 NLKIWDIRKKGCIHTYKGHTRGVNVLRFTPDGRWVVSGGEDNIVKVWDLTAGKLLTEFKS 183
Query: 183 HEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLF 242
HEG I+S+DFHP EFLLATGSADRTVKFWDLETFELIGS PE GV ++F+PDG+T+
Sbjct: 184 HEGQIQSLDFHPHEFLLATGSADRTVKFWDLETFELIGSGGPETAGVRCLSFNPDGKTVL 243
Query: 243 SGFDDNLKVYSWEPVICHDSVDMGWSTLGDLCINDGKLLGCSFYRNSVGIWVADVSHVEP 302
G ++LK++SWEP+ CHD VD+GWS L D+ +++GKLLGCS+ ++ VG+WV D+S EP
Sbjct: 244 CGLQESLKIFSWEPIRCHDGVDVGWSRLSDMNVHEGKLLGCSYNQSCVGVWVVDLSRTEP 303
Query: 303 YGVG 306
G
Sbjct: 304 CMAG 307
|
May participate in a complex which severs microtubules in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays. Arabidopsis thaliana (taxid: 3702) |
| >sp|O61585|KTNB1_STRPU Katanin p80 WD40 repeat-containing subunit B1 OS=Strongylocentrotus purpuratus GN=KATNB1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 380 bits (975), Expect = e-104, Method: Compositional matrix adjust.
Identities = 163/308 (52%), Positives = 230/308 (74%), Gaps = 1/308 (0%)
Query: 3 KRGYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVD 62
KR +KLQE VAHS+NVNC+++G + R ++TGG+D+KVNLWA+GK ++SL G +SPVD
Sbjct: 4 KRAWKLQELVAHSSNVNCLALGPMSGRVMVTGGEDKKVNLWAVGKQNCIISLSGHTSPVD 63
Query: 63 SVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDT 122
SV F+S+E LV+AG+ +G +K++DLE +K+VRTLTGH+++ ++FHPFGEF ASG DT
Sbjct: 64 SVKFNSSEELVVAGSQSGTMKIYDLEPAKIVRTLTGHRNSIRCMDFHPFGEFVASGSTDT 123
Query: 123 NLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKF 182
N+K+WD+R+KGCI+TYKGH+ +N I+F+PDG+W+V+ D +K+WDLT GKL +FK
Sbjct: 124 NVKLWDVRRKGCIYTYKGHSDQVNMIKFSPDGKWLVTASEDTTIKLWDLTMGKLFQEFKN 183
Query: 183 HEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLF 242
H G + I+FHP EFLLA+GS+DRTV+FWDLETF+L+ ST P + V +I+FHPDG LF
Sbjct: 184 HTGGVTGIEFHPNEFLLASGSSDRTVQFWDLETFQLVSSTSPGASAVRSISFHPDGSYLF 243
Query: 243 SGFDDNLKVYSWEPVICHDSVDMGWSTLGDLCINDGKLLGCSFYRNSVGIWVADVSHVEP 302
D L + WEP+ C D+ +GW + D I +L+G SF +V ++VAD+S +
Sbjct: 244 CSSQDMLHAFGWEPIRCFDTFSVGWGKVADTVIASTQLIGASFNATNVSVYVADLSRMST 303
Query: 303 YGVGAPEP 310
G+ A EP
Sbjct: 304 TGI-AQEP 310
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Participates in a complex which severs microtubules in an ATP-dependent manner. May act to target the enzymatic subunit of this complex to sites of action such as the centrosome. Microtubule severing may promote rapid reorganization of cellular microtubule arrays and the release of microtubules from the centrosome following nucleation. Strongylocentrotus purpuratus (taxid: 7668) |
| >sp|Q9BVA0|KTNB1_HUMAN Katanin p80 WD40 repeat-containing subunit B1 OS=Homo sapiens GN=KATNB1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 347 bits (890), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 148/312 (47%), Positives = 224/312 (71%)
Query: 1 MAKRGYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSP 60
+ K +KLQE VAH++NV+ + +GK + R L TGGDD +VNLW+I KP +MSL G +SP
Sbjct: 6 VTKTAWKLQEIVAHASNVSSLVLGKASGRLLATGGDDCRVNLWSINKPNCIMSLTGHTSP 65
Query: 61 VDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCM 120
V+SV ++ E L++AG+ +G I++WDLE +K++RTL GHK+N +++FHP+GEF ASG
Sbjct: 66 VESVRLNTPEELIVAGSQSGSIRVWDLEAAKILRTLMGHKANICSLDFHPYGEFVASGSQ 125
Query: 121 DTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDF 180
DTN+K+WDIR+KGC+ Y+GH++ + +RF+PDG+W+ S D+ VK+WDLTAGK++ +F
Sbjct: 126 DTNIKLWDIRRKGCVFRYRGHSQAVRCLRFSPDGKWLASAADDHTVKLWDLTAGKMMSEF 185
Query: 181 KFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRT 240
H G + ++FHP E+LLA+GS+DRT++FWDLE F+++ E V ++ F+PDG
Sbjct: 186 PGHTGPVNVVEFHPNEYLLASGSSDRTIRFWDLEKFQVVSCIEGEPGPVRSVLFNPDGCC 245
Query: 241 LFSGFDDNLKVYSWEPVICHDSVDMGWSTLGDLCINDGKLLGCSFYRNSVGIWVADVSHV 300
L+SG D+L+VY WEP C D V + W + DL I + +L+G +F +++V +V D++ V
Sbjct: 246 LYSGCQDSLRVYGWEPERCFDVVLVNWGKVADLAICNDQLIGVAFSQSNVSSYVVDLTRV 305
Query: 301 EPYGVGAPEPDQ 312
G A +P Q
Sbjct: 306 TRTGTVARDPVQ 317
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Participates in a complex which severs microtubules in an ATP-dependent manner. May act to target the enzymatic subunit of this complex to sites of action such as the centrosome. Microtubule severing may promote rapid reorganization of cellular microtubule arrays and the release of microtubules from the centrosome following nucleation. Microtubule release from the mitotic spindle poles may allow depolymerization of the microtubule end proximal to the spindle pole, leading to poleward microtubule flux and poleward motion of chromosome. Microtubule release within the cell body of neurons may be required for their transport into neuronal processes by microtubule-dependent motor proteins. This transport is required for axonal growth. Homo sapiens (taxid: 9606) |
| >sp|Q6NVM2|KTNB1_XENTR Katanin p80 WD40 repeat-containing subunit B1 OS=Xenopus tropicalis GN=katnb1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 347 bits (889), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 149/308 (48%), Positives = 222/308 (72%)
Query: 3 KRGYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVD 62
K +KLQE VAH ++V+ + +GK + R + TGGDD +VNLW++ KP +MSL G ++PV+
Sbjct: 8 KTTWKLQEIVAHGSSVSSVVLGKSSGRLVATGGDDCRVNLWSVNKPNCIMSLTGHTTPVE 67
Query: 63 SVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDT 122
SV F++AE L++AG+ +G +++WDLE +K++RTL GHK+N +++FHP+G+F ASG +DT
Sbjct: 68 SVRFNNAEELIVAGSQSGSLRVWDLEAAKILRTLMGHKANVCSLDFHPYGDFVASGSLDT 127
Query: 123 NLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKF 182
N+K+WD+R+KGC+ YKGHT+ + +RF+PDG+W+ S D+ VK+WDLTAGK++ +
Sbjct: 128 NIKLWDVRRKGCVFRYKGHTQAVRCLRFSPDGKWLASASDDHSVKLWDLTAGKMMAELSE 187
Query: 183 HEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLF 242
H+G + I+FHP E+LLA+GSADRTV+FWDLE F+LIG T E V AI F DG +F
Sbjct: 188 HKGPVNIIEFHPNEYLLASGSADRTVRFWDLEKFQLIGCTEGETIPVRAILFSSDGGCIF 247
Query: 243 SGFDDNLKVYSWEPVICHDSVDMGWSTLGDLCINDGKLLGCSFYRNSVGIWVADVSHVEP 302
G D L+VY WEP C D+V +GW + DL I + +L+G S ++++ +V D++ V+
Sbjct: 248 CGGRDALRVYGWEPDQCFDTVPVGWGKVCDLAICNKQLIGVSSAQSTISSFVVDLTRVKM 307
Query: 303 YGVGAPEP 310
G P
Sbjct: 308 TGCAPQGP 315
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Participates in a complex which severs microtubules in an ATP-dependent manner. May act to target the enzymatic subunit of this complex to sites of action such as the centrosome. Microtubule severing may promote rapid reorganization of cellular microtubule arrays and the release of microtubules from the centrosome following nucleation. Xenopus tropicalis (taxid: 8364) |
| >sp|Q4V7Y7|KTNB1_XENLA Katanin p80 WD40 repeat-containing subunit B1 OS=Xenopus laevis GN=katnb1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 345 bits (885), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 148/322 (45%), Positives = 228/322 (70%), Gaps = 3/322 (0%)
Query: 3 KRGYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVD 62
K +KLQE VAH +V+ + +G+ + R + TGGDD +V+LW++ KP +MSL G ++PV+
Sbjct: 8 KTTWKLQEIVAHGCSVSSVVLGRSSGRLVATGGDDCRVHLWSVNKPNCIMSLTGHTTPVE 67
Query: 63 SVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDT 122
SV F+++E L++AG+ +G +++WDLE +K++RTL GHK+N ++++FHP+GEF ASG +DT
Sbjct: 68 SVRFNNSEELIVAGSQSGSLRIWDLEAAKILRTLMGHKANVSSLDFHPYGEFVASGSLDT 127
Query: 123 NLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKF 182
N+K+WD+R+KGC+ YKGHT+ + +RF+PDG+W+ S D+ VK+WDLTAGK++ +
Sbjct: 128 NIKLWDVRRKGCVFRYKGHTQAVRCLRFSPDGKWLASASDDHSVKLWDLTAGKMMAELSE 187
Query: 183 HEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLF 242
H+G + I+FHP E+LLA+GSADRTV+FWDLE F+L+G T E V AI F DG +F
Sbjct: 188 HKGPVNIIEFHPNEYLLASGSADRTVRFWDLEKFQLVGCTEGETIPVRAILFSNDGGCIF 247
Query: 243 SGFDDNLKVYSWEPVICHDSVDMGWSTLGDLCINDGKLLGCSFYRNSVGIWVADVSHVEP 302
G D+L+VY WEP C D+V +GW + DL I + +L+G S ++++ +V D++ V+
Sbjct: 248 CGGKDSLRVYGWEPDQCFDTVPVGWGKVSDLAICNNQLIGVSSAQSNISSFVVDLTRVKM 307
Query: 303 YGVGAPEPDQSICTEVKFNPPG 324
G P + E+ + P
Sbjct: 308 TGCA---PQGPVPAEIPISQPA 326
|
Participates in a complex which severs microtubules in an ATP-dependent manner. May act to target the enzymatic subunit of this complex to sites of action such as the centrosome. Microtubule severing may promote rapid reorganization of cellular microtubule arrays and the release of microtubules from the centrosome following nucleation. Xenopus laevis (taxid: 8355) |
| >sp|Q5ZIU8|KTNB1_CHICK Katanin p80 WD40 repeat-containing subunit B1 OS=Gallus gallus GN=KATNB1 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 343 bits (879), Expect = 6e-93, Method: Compositional matrix adjust.
Identities = 143/304 (47%), Positives = 215/304 (70%)
Query: 1 MAKRGYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSP 60
+ K +KLQE VAHS+NV+ + +GK R L TGGDD +VN+W++ KP +MSL G ++P
Sbjct: 6 VTKTAWKLQEIVAHSSNVSSLVLGKSTGRLLATGGDDCRVNVWSVNKPNCVMSLTGHTTP 65
Query: 61 VDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCM 120
++S+ + E L++AG+ +G I++WDLE +K++RTL GHK+N +++FHP+G F ASG +
Sbjct: 66 IESLQISAKEELIVAGSQSGSIRVWDLEAAKILRTLLGHKANICSLDFHPYGSFVASGSL 125
Query: 121 DTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDF 180
DT++K+WD+R+KGCI YK HT+ + +RF+PDG+W+ S D+ VK+WDLTAGK++ +F
Sbjct: 126 DTDIKLWDVRRKGCIFKYKSHTQAVRCLRFSPDGKWLASAADDHTVKLWDLTAGKVMFEF 185
Query: 181 KFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRT 240
H G + ++FHP E+LLA+GS+DRT++FWDLE F ++ E T V I F+PDG
Sbjct: 186 TGHSGPVNVVEFHPSEYLLASGSSDRTIRFWDLEKFHVVSCIEEEATPVRCILFNPDGCC 245
Query: 241 LFSGFDDNLKVYSWEPVICHDSVDMGWSTLGDLCINDGKLLGCSFYRNSVGIWVADVSHV 300
L+ GF D+L+VY WEP C D V + W + DL + +L+G SF +++V +V D+S V
Sbjct: 246 LYGGFQDSLRVYGWEPERCFDVVVVNWGKVADLSVCHNQLIGVSFAQSTVSSFVVDLSRV 305
Query: 301 EPYG 304
G
Sbjct: 306 TKSG 309
|
Participates in a complex which severs microtubules in an ATP-dependent manner. May act to target the enzymatic subunit of this complex to sites of action such as the centrosome. Microtubule severing may promote rapid reorganization of cellular microtubule arrays and the release of microtubules from the centrosome following nucleation. Gallus gallus (taxid: 9031) |
| >sp|Q8BG40|KTNB1_MOUSE Katanin p80 WD40 repeat-containing subunit B1 OS=Mus musculus GN=Katnb1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 342 bits (876), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 143/297 (48%), Positives = 217/297 (73%)
Query: 1 MAKRGYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSP 60
+ K +KLQE VAH++NV+ + +GK + R L TGGDD +VNLW+I KP +MSL G +SP
Sbjct: 6 VTKTAWKLQEIVAHASNVSSLVLGKASGRLLATGGDDCRVNLWSINKPNCIMSLTGHTSP 65
Query: 61 VDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCM 120
V+SV ++ E L++AG+ +G I++WDLE +K++RTL GHK+N +++FHP+GEF ASG
Sbjct: 66 VESVRLNTPEELIVAGSQSGSIRVWDLEAAKILRTLMGHKANICSLDFHPYGEFVASGSQ 125
Query: 121 DTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDF 180
DTN+K+WDIR+KGC+ Y+GH++ + +RF+PDG+W+ S D+ VK+WDLTAGK++ +F
Sbjct: 126 DTNIKLWDIRRKGCVFRYRGHSQAVRCLRFSPDGKWLASAADDHTVKLWDLTAGKMMSEF 185
Query: 181 KFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRT 240
H G + ++FHP E+LLA+GS+DRT++FWDLE F+++ E V ++ F+PDG
Sbjct: 186 PGHTGPVNVVEFHPNEYLLASGSSDRTIRFWDLEKFQVVSCIEGEPGPVRSVLFNPDGCC 245
Query: 241 LFSGFDDNLKVYSWEPVICHDSVDMGWSTLGDLCINDGKLLGCSFYRNSVGIWVADV 297
L+SG D+L+VY WEP C D V + W + DL I + +L+G +F +++V +V D+
Sbjct: 246 LYSGCQDSLRVYGWEPERCFDVVLVNWGKVADLAICNDQLIGVAFSQSNVSSYVVDL 302
|
Participates in a complex which severs microtubules in an ATP-dependent manner. May act to target the enzymatic subunit of this complex to sites of action such as the centrosome. Microtubule severing may promote rapid reorganization of cellular microtubule arrays and the release of microtubules from the centrosome following nucleation. Microtubule release from the mitotic spindle poles may allow depolymerization of the microtubule end proximal to the spindle pole, leading to poleward microtubule flux and poleward motion of chromosome. Microtubule release within the cell body of neurons may be required for their transport into neuronal processes by microtubule-dependent motor proteins. This transport is required for axonal growth. Mus musculus (taxid: 10090) |
| >sp|Q7ZUV2|KTNB1_DANRE Katanin p80 WD40 repeat-containing subunit B1 OS=Danio rerio GN=katnb1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 335 bits (858), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 140/299 (46%), Positives = 214/299 (71%)
Query: 6 YKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVA 65
+KLQE VAHS+NV+ + +GK + R L TGG+D +VN+WA+ KP +MSL G +S V +
Sbjct: 11 WKLQEIVAHSSNVSSLVLGKSSGRLLATGGEDCRVNIWAVSKPNCIMSLTGHTSAVGCIQ 70
Query: 66 FDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLK 125
F+S+E V+AG+ +G ++LWDLE +K++RTL GHK++ ++++FHP GE+ ASG +D+N+K
Sbjct: 71 FNSSEERVVAGSLSGSLRLWDLEAAKILRTLMGHKASISSLDFHPMGEYLASGSVDSNIK 130
Query: 126 IWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEG 185
+WD+R+KGC+ YKGHT+ + + F+PDG+W+ S D+ VK+WDL AGK++ +F H
Sbjct: 131 LWDVRRKGCVFRYKGHTQAVRCLAFSPDGKWLASASDDSTVKLWDLIAGKMITEFTSHTS 190
Query: 186 HIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGF 245
+ + FHP E+LLA+GSADRTVK WDLE F +IGS+ E V ++ F+PDG L+SG
Sbjct: 191 AVNVVQFHPNEYLLASGSADRTVKLWDLEKFNMIGSSEGETGVVRSVLFNPDGSCLYSGS 250
Query: 246 DDNLKVYSWEPVICHDSVDMGWSTLGDLCINDGKLLGCSFYRNSVGIWVADVSHVEPYG 304
++ L+VY WEP C D V +GW + DL I++ +++ S+ +V +V D++ V+ G
Sbjct: 251 ENTLRVYGWEPDRCFDVVHVGWGKVSDLAISNNQMIAVSYSHTNVSWYVVDLNRVKKSG 309
|
Participates in a complex which severs microtubules in an ATP-dependent manner. May act to target the enzymatic subunit of this complex to sites of action such as the centrosome. Microtubule severing may promote rapid reorganization of cellular microtubule arrays and the release of microtubules from the centrosome following nucleation. Danio rerio (taxid: 7955) |
| >sp|Q8YRI1|YY46_NOSS1 Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr3466 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 161 bits (407), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 94/290 (32%), Positives = 152/290 (52%), Gaps = 6/290 (2%)
Query: 6 YKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVA 65
Y LQ H+ VN ++ L +G DQ V LW I L L G +S V+SV
Sbjct: 1152 YTLQ---GHTNWVNAVAFSPDGAT-LASGSGDQTVRLWDISSSKCLYILQGHTSWVNSVV 1207
Query: 66 FDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLK 125
F+ + +G+S ++LW++ SK + T GH S +V F+P G ASG D ++
Sbjct: 1208 FNPDGSTLASGSSDQTVRLWEINSSKCLCTFQGHTSWVNSVVFNPDGSMLASGSSDKTVR 1267
Query: 126 IWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEG 185
+WDI C+HT++GHT +N++ F PDG + SG D V++W++++ K LH F+ H
Sbjct: 1268 LWDISSSKCLHTFQGHTNWVNSVAFNPDGSMLASGSGDQTVRLWEISSSKCLHTFQGHTS 1327
Query: 186 HIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGF 245
+ S+ F P +LA+GS D+TV+ W + + E + + V ++ F PDG L SG
Sbjct: 1328 WVSSVTFSPDGTMLASGSDDQTVRLWSISSGECLYTFLGHTNWVGSVIFSPDGAILASGS 1387
Query: 246 -DDNLKVYSWEPVICHDSVDMGWSTLGDLCIN-DGKLLGCSFYRNSVGIW 293
D ++++S C ++ + +G + + DG LL +V +W
Sbjct: 1388 GDQTVRLWSISSGKCLYTLQGHNNWVGSIVFSPDGTLLASGSDDQTVRLW 1437
|
Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690) |
| >sp|Q8YTC2|Y2800_NOSS1 Uncharacterized WD repeat-containing protein alr2800 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr2800 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 150 bits (380), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 91/269 (33%), Positives = 140/269 (52%), Gaps = 6/269 (2%)
Query: 29 RFLITGGDDQKVNLWAIGKPTALMSLC-GLSSPVDSVAFD-SAEVLVLAGASTGVIKLWD 86
+ L T D V +W + K L+ +C G S+ V V F E+L GA V KLW
Sbjct: 655 QLLATCDTDCHVRVWEV-KSGKLLLICRGHSNWVRFVVFSPDGEILASCGADENV-KLWS 712
Query: 87 LEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGIN 146
+ + ++TLTGH+ +V FHP GE AS D +K+WDI+ C+ T GHT +
Sbjct: 713 VRDGVCIKTLTGHEHEVFSVAFHPDGETLASASGDKTIKLWDIQDGTCLQTLTGHTDWVR 772
Query: 147 TIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADR 206
+ F+PDG + S D+ +K+WD++ GK L K H G +RS+ F LA+GS DR
Sbjct: 773 CVAFSPDGNTLASSAADHTIKLWDVSQGKCLRTLKSHTGWVRSVAFSADGQTLASGSGDR 832
Query: 207 TVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGFDD-NLKVYSWEPVICHDSVDM 265
T+K W+ T E + + V++I + PD + L SG D +K++ + IC ++
Sbjct: 833 TIKIWNYHTGECLKTYIGHTNSVYSIAYSPDSKILVSGSGDRTIKLWDCQTHICIKTLHG 892
Query: 266 GWSTLGDLCIN-DGKLLGCSFYRNSVGIW 293
+ + + + DG+ L C SV +W
Sbjct: 893 HTNEVCSVAFSPDGQTLACVSLDQSVRLW 921
|
Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1074 | ||||||
| 357446405 | 1131 | Katanin p80 WD40-containing subunit B1 [ | 0.970 | 0.921 | 0.502 | 0.0 | |
| 334183464 | 1181 | transducin/WD-40 repeat-containing prote | 0.966 | 0.878 | 0.464 | 0.0 | |
| 334183466 | 1179 | transducin/WD-40 repeat-containing prote | 0.964 | 0.878 | 0.461 | 0.0 | |
| 255560798 | 936 | katanin P80 subunit, putative [Ricinus c | 0.690 | 0.792 | 0.560 | 0.0 | |
| 356549389 | 824 | PREDICTED: katanin p80 WD40 repeat-conta | 0.551 | 0.718 | 0.66 | 0.0 | |
| 359497299 | 545 | PREDICTED: katanin p80 WD40 repeat-conta | 0.496 | 0.977 | 0.695 | 0.0 | |
| 356555068 | 825 | PREDICTED: katanin p80 WD40 repeat-conta | 0.568 | 0.740 | 0.643 | 0.0 | |
| 296088927 | 506 | unnamed protein product [Vitis vinifera] | 0.471 | 1.0 | 0.691 | 0.0 | |
| 449457803 | 922 | PREDICTED: katanin p80 WD40 repeat-conta | 0.628 | 0.732 | 0.581 | 0.0 | |
| 449488504 | 906 | PREDICTED: katanin p80 WD40 repeat-conta | 0.526 | 0.623 | 0.642 | 0.0 |
| >gi|357446405|ref|XP_003593480.1| Katanin p80 WD40-containing subunit B1 [Medicago truncatula] gi|355482528|gb|AES63731.1| Katanin p80 WD40-containing subunit B1 [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 999 bits (2582), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 584/1163 (50%), Positives = 736/1163 (63%), Gaps = 121/1163 (10%)
Query: 1 MAKRGYKL--------------------QEFVAHSANVNCISIGKKACRFLITGGDDQKV 40
MAKRGYK+ +EFVAHS+NVNC++IGKKACR +TGGDD KV
Sbjct: 1 MAKRGYKIRILFYFLINVLCLMKFQLTSEEFVAHSSNVNCLNIGKKACRLFVTGGDDHKV 60
Query: 41 NLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHK 100
NLW IGKPT+L SL G +SPV+SV FDS EVLVLAG+++GVI+LWDLEESKMVRT+ GH+
Sbjct: 61 NLWTIGKPTSLSSLSGHTSPVESVTFDSGEVLVLAGSTSGVIRLWDLEESKMVRTVAGHR 120
Query: 101 SNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSG 160
SNCT+VEFHPFGEFFASG MDTNLKIWD RKKGCIHTYKGH++GI+TI+FTPDGRWVVSG
Sbjct: 121 SNCTSVEFHPFGEFFASGSMDTNLKIWDNRKKGCIHTYKGHSQGISTIKFTPDGRWVVSG 180
Query: 161 GFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIG 220
GFDNVVKVWDLTAGKLLHDF FH+GHI S+DFHPLEFLLATGSADRTVKFWDLE+FELIG
Sbjct: 181 GFDNVVKVWDLTAGKLLHDFNFHDGHITSLDFHPLEFLLATGSADRTVKFWDLESFELIG 240
Query: 221 STRPEVTGVHAITFHPDGRTLFSGFDDNLKVYSWEPVICHDSVDMGWSTLGDLCINDGKL 280
S R E TGV ++ FHPDGRTLFSG +D LKV+SWEPVICHD+VDMGW+ LGDLCI+DGKL
Sbjct: 241 SARREATGVRSMAFHPDGRTLFSGHEDGLKVFSWEPVICHDTVDMGWTKLGDLCIHDGKL 300
Query: 281 LGCSFYRNSVGIWVADVSHVEPYGVGAPEPDQSICTEVKFNPPGSHSLEKVGIIGRSTSG 340
LGCS+YRNSVG+WVAD+S +EPYG G + + I TE K + GS LE V + T+G
Sbjct: 301 LGCSYYRNSVGVWVADISLIEPYGDGL-DLKKDIGTEQKHSLKGS-KLENVEVDVGPTAG 358
Query: 341 FRSTSPDYETKDIKTIYVDSTGGKPVASQKIGPLNSPKVVPPLDSEEISDLQTEKQNPAI 400
FRS SPD E+K+IK IY+DS+GGKPV+ Q+ +S KV +S+EI DL+T KQNPA
Sbjct: 359 FRSISPD-ESKEIKNIYIDSSGGKPVSLQRSASYHSAKVDLAEESKEIYDLETLKQNPAT 417
Query: 401 GVPELSNGQALDKSFIVPSIVPQESPAGKDSSFSAGESITFSRTKPGMLLRPAHVQKPSN 460
V SN Q KS IVP+I P KDS+ E+ITFS+TKPGMLL+PAHV++ S
Sbjct: 418 KVHVKSNEQETRKSIIVPNI-----PDSKDSAKPVKETITFSKTKPGMLLKPAHVRRAST 472
Query: 461 SKYDAERLSTAAESESLNSKKSDLDSAVDPNVKTRFVSSDGARKSCEEKDCHIKTITGEI 520
++D +R S S + S LDSA P ++ S + ++SCE+K IK +T +
Sbjct: 473 GRFDVDRFSD-VNSRTFCDTASKLDSAKFPKFESYVGSQNEVKESCEDKH-PIKNVTDKS 530
Query: 521 ENIFSPQKPPKQEDGDKSRDCSKITNSVKFVNGVAVVPGRTRSLVERFERREKVNSNEDL 580
SP K +S C++ VK+VNGVAVV GRTRSLVERFERRE V NED
Sbjct: 531 NKTVSPYKIFNLAKRVESSTCNEEITPVKYVNGVAVVRGRTRSLVERFERREIVQVNEDE 590
Query: 581 AANVIPQTRLS----RNEDQ-----AADVTPQTTLSSNEDHVANVTS-----QTRLNGNE 626
+P + NEDQ + + + NED + S + ++ NE
Sbjct: 591 INAPLPTINEAGVNIHNEDQTNSYPTSVFERKEIIPCNEDQTSETPSVVFERKEKIPRNE 650
Query: 627 YQAATAP-----QQTRLSSN------IDPVANVTPQTLPSGNEDQAANVTPQT------R 669
Q + +P ++ R+ N P+ + LP +EDQ N +P + +
Sbjct: 651 DQTSESPSTAFERKERIPRNEVQTNAYPPMVFERKEKLPR-DEDQ-TNESPSSVFERKEK 708
Query: 670 PSSNEDQT----------ANVIRQTRPSSNEDQAVIVNPQTRRHSNEDQASNIAPYTRHD 719
+E QT I ++ +N +V+ + R E Q +N P T +
Sbjct: 709 IPRDEGQTNASPSTVFEMKERIPRSEVQTNAPPSVVFERKDRIPRTEVQ-TNAPPSTVFE 767
Query: 720 RNE-----DRATNITPQSKISRNQDQATNITSHMGLNSNENRATNIPSRSRLNSREDQST 774
R E + TN +P + R + + + +N + + + R+ E Q+
Sbjct: 768 RKERIPRDEVQTNASPSTVFERKER-----IPRIEVQTNASSSVVFERKERIPRNEVQA- 821
Query: 775 NTPSQTIVNGAENKATKTPTQMRLKSSENQVTSTP----------PRARLNSSIEGQATN 824
N P T+ E R+ SE Q ++P PR+ + ++ +
Sbjct: 822 NAPPSTVFERKE----------RIPRSEGQTNASPSMVFERKERIPRSEVQTN---APPS 868
Query: 825 IPIRRRFNRNVDQT----TNVTRHRRSIS-NTDQATSTTAHVA-----VKNNDDIATVIT 874
+ + R RNV QT T V+ + IS N QA ++ A V+ + N+D +
Sbjct: 869 LERKERIPRNVVQTNASLTLVSERKERISRNGVQANASLAMVSERKERIPRNEDRNNFPS 928
Query: 875 PHVTALSYERTST---PKGEPQISGRDTPVANEGEAVESLMETHDIFISTLRSRLTKLQV 931
T + + + PK EPQ+S RD+ NE +E LMETHD+ +S LRSRLTKLQV
Sbjct: 929 IPNTPSDIDESPSPNIPKLEPQVSQRDSSSPNEMAIIEGLMETHDVTLSNLRSRLTKLQV 988
Query: 932 VRHFWERNDIKGGINALRKLPDHSVQADVMSVLMEKMEILNLDLFLCLLPMLMGLLDSKM 991
VRHFWERNDIKG I+ALRKLPD SVQADV+SVLMEKMEIL LDL LLP+L GLLDSK
Sbjct: 989 VRHFWERNDIKGAISALRKLPDQSVQADVISVLMEKMEILTLDLLASLLPVLTGLLDSKT 1048
Query: 992 ERHASISLEMLLKLVVVFGPMIHSTLSAPPAVGVDLHAEQRRECCNRCFMQLQKIQKILP 1051
ERH +SL+MLLK VFG I +T+SAPP+VGVDLH EQRRECCN CFM+LQK+Q ILP
Sbjct: 1049 ERHVKVSLDMLLKFAAVFGSTITATISAPPSVGVDLHREQRRECCNECFMELQKVQTILP 1108
Query: 1052 ILERRGGLLAKCAHELNLVLQES 1074
+L RRGGLLAK + ELNLVLQ S
Sbjct: 1109 MLIRRGGLLAKSSMELNLVLQRS 1131
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|334183464|ref|NP_176316.4| transducin/WD-40 repeat-containing protein [Arabidopsis thaliana] gi|332195682|gb|AEE33803.1| transducin/WD-40 repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 907 bits (2344), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 563/1213 (46%), Positives = 712/1213 (58%), Gaps = 175/1213 (14%)
Query: 1 MAKRGYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSP 60
MAKRGYKLQEF+AHSANVNC+SIGKK R ITGGDD KVNLWAIGKPT+LMSLCG +S
Sbjct: 1 MAKRGYKLQEFLAHSANVNCLSIGKKTSRLFITGGDDYKVNLWAIGKPTSLMSLCGHTSA 60
Query: 61 VDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCM 120
VDSVAFDSAEVLVLAGAS+GVIKLWD+EE+KMVR TGH+SNC+AVEFHPFGEF ASG
Sbjct: 61 VDSVAFDSAEVLVLAGASSGVIKLWDVEEAKMVRAFTGHRSNCSAVEFHPFGEFLASGSS 120
Query: 121 DTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDF 180
D NLKIWDIRKKGCI TYKGH+RGI+TIRFTPDGRWVVSGG DNVVKVWDLTAGKLLH+F
Sbjct: 121 DANLKIWDIRKKGCIQTYKGHSRGISTIRFTPDGRWVVSGGLDNVVKVWDLTAGKLLHEF 180
Query: 181 KFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRT 240
KFHEG IRS+DFHPLEFLLATGSADRTVKFWDLETFELIGSTRPE TGV +I FHPDGRT
Sbjct: 181 KFHEGPIRSLDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEATGVRSIKFHPDGRT 240
Query: 241 LFSGFDDNLKVYSWEPVICHDSVDMGWSTLGDLCINDGKLLGCSFYRNSVGIWVADVSHV 300
LF G DD+LKVYSWEPV+CHD VDMGWSTLGDLCI++GKLLGCS+Y+NSVGIWV+D+S +
Sbjct: 241 LFCGLDDSLKVYSWEPVVCHDGVDMGWSTLGDLCISEGKLLGCSYYQNSVGIWVSDISQI 300
Query: 301 EPYGVGAPEPDQSICTEVKFNPPGSHSLEKVGIIGRSTSGFRSTSPDYETKDIKTIYVDS 360
EPYG+G+ D+ C E + S +++ R RS+SPDYETK+IK IY+DS
Sbjct: 301 EPYGIGSA--DKKECVEKILSALDDQSFDRIKSTPR-----RSSSPDYETKEIKNIYIDS 353
Query: 361 TGGKPVASQKIGPLNSPKV---------------VPPLDSEEISDL-------------- 391
TGG + K G L++P V P DS+ D
Sbjct: 354 TGGNSAVAHKSGSLSTPATSTGQAGDNKSLVVHSVVPRDSDIGKDSSDSGKESITFSKTK 413
Query: 392 ------------------QTEKQNPAIGVPE---LSNGQALDKSFIVPSIVPQESPAGKD 430
+T+KQ+ A+G + L + LD S + +P D
Sbjct: 414 PGMLLRPAYVRKTPTKFDETKKQSVAVGYLKKSGLDGEKKLDTETAFDSEMSGRNPYDAD 473
Query: 431 SSFSAGESITFSRT---------KPGMLLRPAHVQKPSNSKYDAERLSTAAESESLNSKK 481
S + F + MLL+P VQ+ ++KY+ R +T+ +S +L+SKK
Sbjct: 474 DSIIKSITNKFEQALLPESPTDEAKCMLLKPPRVQRSPSTKYNEARWATSTDSGALDSKK 533
Query: 482 SDLDSAVDPNVKTRFVSSDGARKSCEEKDCHIKTITGEIENIFSPQKPPKQEDGDKSRDC 541
+ L+S+ D ++ T G+ CEE D K+I+ E + SP+K + +S
Sbjct: 534 NGLESSRDMDLPTGLRDDRGS-NPCEE-DIENKSISSRSERVLSPEKAGDELKSLESPGG 591
Query: 542 SKITNSVKFVNGVAVVPGRTRSLVERFERREKVNSNEDLAANV-IPQTRLSRNED----- 595
SK + SVK V GV VV GRTRSLVERFER EK+ +ED AA+ + + S E+
Sbjct: 592 SKESKSVKVVRGVKVVSGRTRSLVERFERGEKITHSEDKAASATVVHSSNSVEEEPLTAS 651
Query: 596 -QAADVTPQTTLSSNEDHVANVTSQTRLNGNEYQAATAPQQTRLSSNIDPVANVTPQTLP 654
Q + P + D N T+ P + + PV V P L
Sbjct: 652 VQTVSMMPTQVMPVKLDQATNSTT-----------VDVPVLSTRRTKSTPV-RVMPVVL- 698
Query: 655 SGNEDQAANVTP---QTRP--SSNEDQTANVI-----RQTRPSSNEDQAVIVNPQTRRHS 704
G + A TP TRP +S + T++V RQTR S +I+N T+ S
Sbjct: 699 -GRDTSMATDTPPVTSTRPDRTSATNLTSDVSGVTSKRQTRTSPAPVMPMILNQTTKMKS 757
Query: 705 NEDQASNIAP--YTRHDRNED-------RATNITP----------QSKISRNQ------- 738
+E ++ P + D D R T +P ++KI ++
Sbjct: 758 DEPSITSTWPDRTSATDLTSDVSGVISSRQTRTSPAPVMPMKLNQKTKIKSDEPPITSTR 817
Query: 739 ---DQATNITSHMGLNSNENRATNIPS---------RSRLNSREDQS---TNTPSQT--- 780
ATN+TS ++ +A P+ R N + D+ + P +T
Sbjct: 818 PDRPSATNLTSDESPVTSTRQAKTSPAPVTPVILNQRQTTNMKSDEPPVISTRPLRTSSA 877
Query: 781 -----IVNGAENKATKTPTQ--------------MRLKSSENQVTSTPPRARLNSSIEGQ 821
I+N A + P M+L ++N + PP A S+
Sbjct: 878 RVMPVILNQASTTYDERPLSSSRSARTSPARIMPMKLNQADNMPSYEPPVALTRSARNSP 937
Query: 822 ATNIPIRRRFNRNVDQTTNVTRHRRSISNTDQATSTTAHVAVKNNDDIATVITPHVTALS 881
A IP++ ++Q TNVT I + Q S T +A D T +T T +
Sbjct: 938 ARVIPVK------LNQATNVTADASHI-RSRQRFSPTQTLATPAVFDQVTDMTLDETTKT 990
Query: 882 YERTS--TPKGEPQISGRDTPVANEGEAVESLMETHDIFISTLRSRLTKLQVVRHFWERN 939
+ + T K EPQISGR+ ++G+ E LM TH ++TL+SRLTKLQ+VRHFWER+
Sbjct: 991 QQSSDILTQKEEPQISGRE----DDGDIWEILMRTHSEVLNTLQSRLTKLQIVRHFWERS 1046
Query: 940 DIKGGINALRKLPDHSVQADVMSVLMEKMEILNLDLFLCLLPMLMGLLDSKMERHASISL 999
DIKG I ALRKL DHSVQADV+++L +K EIL LDLF L P+L GLL SK ER ++SL
Sbjct: 1047 DIKGAIAALRKLSDHSVQADVINILTDKTEILTLDLFSQLAPVLTGLLGSKTERPVNVSL 1106
Query: 1000 EMLLKLVVVFGPMIHSTLSAPPAVGVDLHAEQRRECCNRCFMQLQKIQKILPILERRGGL 1059
EMLLKLV VFG +I ST+SA VGVDLHAE+R + C C +LQK+QKILP+L RRGGL
Sbjct: 1107 EMLLKLVAVFGTVIQSTVSARRVVGVDLHAEERLQICQSCSAELQKVQKILPLLTRRGGL 1166
Query: 1060 LAKCAHELNLVLQ 1072
+A+ A ELNLVLQ
Sbjct: 1167 IARKAQELNLVLQ 1179
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|334183466|ref|NP_001185277.1| transducin/WD-40 repeat-containing protein [Arabidopsis thaliana] gi|332195683|gb|AEE33804.1| transducin/WD-40 repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 895 bits (2313), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 560/1213 (46%), Positives = 709/1213 (58%), Gaps = 177/1213 (14%)
Query: 1 MAKRGYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSP 60
MAKRGYKLQEF+AHSANVNC+SIGKK R ITGGDD KVNLWAIGKPT+LMSLCG +S
Sbjct: 1 MAKRGYKLQEFLAHSANVNCLSIGKKTSRLFITGGDDYKVNLWAIGKPTSLMSLCGHTSA 60
Query: 61 VDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCM 120
VDSVAFDSAEVLVLAGAS+GVIKLWD+EE+KMVR TGH+SNC+AVEFHPFGEF ASG
Sbjct: 61 VDSVAFDSAEVLVLAGASSGVIKLWDVEEAKMVRAFTGHRSNCSAVEFHPFGEFLASGSS 120
Query: 121 DTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDF 180
D NLKIWDIRKKGCI TYKGH+RGI+TIRFTPDGRWVVSGG DNVVKVWDLTAGKLLH+F
Sbjct: 121 DANLKIWDIRKKGCIQTYKGHSRGISTIRFTPDGRWVVSGGLDNVVKVWDLTAGKLLHEF 180
Query: 181 KFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRT 240
KFHEG IRS+DFHPLEFLLATGSADRTVKFWDLETFELIGSTRPE TGV +I FHPDGRT
Sbjct: 181 KFHEGPIRSLDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEATGVRSIKFHPDGRT 240
Query: 241 LFSGFDDNLKVYSWEPVICHDSVDMGWSTLGDLCINDGKLLGCSFYRNSVGIWVADVSHV 300
LF G DD+LKVYSWEPV+CHD VDMGWSTLGDLCI++GKLLGCS+Y+NSVGIWV+D+S +
Sbjct: 241 LFCGLDDSLKVYSWEPVVCHDGVDMGWSTLGDLCISEGKLLGCSYYQNSVGIWVSDISQI 300
Query: 301 EPYGVGAPEPDQSICTEVKFNPPGSHSLEKVGIIGRSTSGFRSTSPDYETKDIKTIYVDS 360
EPYG+G+ D+ C E + S +++ R RS+SPDYETK+IK IY+D
Sbjct: 301 EPYGIGSA--DKKECVEKILSALDDQSFDRIKSTPR-----RSSSPDYETKEIKNIYIDC 353
Query: 361 TGGKPVASQKIGPLNSPKV---------------VPPLDSEEISDL-------------- 391
G + K G L++P V P DS+ D
Sbjct: 354 --GNSAVAHKSGSLSTPATSTGQAGDNKSLVVHSVVPRDSDIGKDSSDSGKESITFSKTK 411
Query: 392 ------------------QTEKQNPAIGVPE---LSNGQALDKSFIVPSIVPQESPAGKD 430
+T+KQ+ A+G + L + LD S + +P D
Sbjct: 412 PGMLLRPAYVRKTPTKFDETKKQSVAVGYLKKSGLDGEKKLDTETAFDSEMSGRNPYDAD 471
Query: 431 SSFSAGESITFSRT---------KPGMLLRPAHVQKPSNSKYDAERLSTAAESESLNSKK 481
S + F + MLL+P VQ+ ++KY+ R +T+ +S +L+SKK
Sbjct: 472 DSIIKSITNKFEQALLPESPTDEAKCMLLKPPRVQRSPSTKYNEARWATSTDSGALDSKK 531
Query: 482 SDLDSAVDPNVKTRFVSSDGARKSCEEKDCHIKTITGEIENIFSPQKPPKQEDGDKSRDC 541
+ L+S+ D ++ T G+ CEE D K+I+ E + SP+K + +S
Sbjct: 532 NGLESSRDMDLPTGLRDDRGS-NPCEE-DIENKSISSRSERVLSPEKAGDELKSLESPGG 589
Query: 542 SKITNSVKFVNGVAVVPGRTRSLVERFERREKVNSNEDLAANV-IPQTRLSRNED----- 595
SK + SVK V GV VV GRTRSLVERFER EK+ +ED AA+ + + S E+
Sbjct: 590 SKESKSVKVVRGVKVVSGRTRSLVERFERGEKITHSEDKAASATVVHSSNSVEEEPLTAS 649
Query: 596 -QAADVTPQTTLSSNEDHVANVTSQTRLNGNEYQAATAPQQTRLSSNIDPVANVTPQTLP 654
Q + P + D N T+ P + + PV V P L
Sbjct: 650 VQTVSMMPTQVMPVKLDQATNSTT-----------VDVPVLSTRRTKSTPV-RVMPVVL- 696
Query: 655 SGNEDQAANVTP---QTRP--SSNEDQTANVI-----RQTRPSSNEDQAVIVNPQTRRHS 704
G + A TP TRP +S + T++V RQTR S +I+N T+ S
Sbjct: 697 -GRDTSMATDTPPVTSTRPDRTSATNLTSDVSGVTSKRQTRTSPAPVMPMILNQTTKMKS 755
Query: 705 NEDQASNIAP--YTRHDRNED-------RATNITP----------QSKISRNQ------- 738
+E ++ P + D D R T +P ++KI ++
Sbjct: 756 DEPSITSTWPDRTSATDLTSDVSGVISSRQTRTSPAPVMPMKLNQKTKIKSDEPPITSTR 815
Query: 739 ---DQATNITSHMGLNSNENRATNIPS---------RSRLNSREDQS---TNTPSQT--- 780
ATN+TS ++ +A P+ R N + D+ + P +T
Sbjct: 816 PDRPSATNLTSDESPVTSTRQAKTSPAPVTPVILNQRQTTNMKSDEPPVISTRPLRTSSA 875
Query: 781 -----IVNGAENKATKTPTQ--------------MRLKSSENQVTSTPPRARLNSSIEGQ 821
I+N A + P M+L ++N + PP A S+
Sbjct: 876 RVMPVILNQASTTYDERPLSSSRSARTSPARIMPMKLNQADNMPSYEPPVALTRSARNSP 935
Query: 822 ATNIPIRRRFNRNVDQTTNVTRHRRSISNTDQATSTTAHVAVKNNDDIATVITPHVTALS 881
A IP++ ++Q TNVT I + Q S T +A D T +T T +
Sbjct: 936 ARVIPVK------LNQATNVTADASHI-RSRQRFSPTQTLATPAVFDQVTDMTLDETTKT 988
Query: 882 YERTS--TPKGEPQISGRDTPVANEGEAVESLMETHDIFISTLRSRLTKLQVVRHFWERN 939
+ + T K EPQISGR+ ++G+ E LM TH ++TL+SRLTKLQ+VRHFWER+
Sbjct: 989 QQSSDILTQKEEPQISGRE----DDGDIWEILMRTHSEVLNTLQSRLTKLQIVRHFWERS 1044
Query: 940 DIKGGINALRKLPDHSVQADVMSVLMEKMEILNLDLFLCLLPMLMGLLDSKMERHASISL 999
DIKG I ALRKL DHSVQADV+++L +K EIL LDLF L P+L GLL SK ER ++SL
Sbjct: 1045 DIKGAIAALRKLSDHSVQADVINILTDKTEILTLDLFSQLAPVLTGLLGSKTERPVNVSL 1104
Query: 1000 EMLLKLVVVFGPMIHSTLSAPPAVGVDLHAEQRRECCNRCFMQLQKIQKILPILERRGGL 1059
EMLLKLV VFG +I ST+SA VGVDLHAE+R + C C +LQK+QKILP+L RRGGL
Sbjct: 1105 EMLLKLVAVFGTVIQSTVSARRVVGVDLHAEERLQICQSCSAELQKVQKILPLLTRRGGL 1164
Query: 1060 LAKCAHELNLVLQ 1072
+A+ A ELNLVLQ
Sbjct: 1165 IARKAQELNLVLQ 1177
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255560798|ref|XP_002521412.1| katanin P80 subunit, putative [Ricinus communis] gi|223539311|gb|EEF40902.1| katanin P80 subunit, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 857 bits (2213), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 447/798 (56%), Positives = 558/798 (69%), Gaps = 56/798 (7%)
Query: 1 MAKRGYKL-----------QEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPT 49
MAKRGYKL +EFVAHS+NVNC++IGKK CR ITGGDD KVNLWAIGKPT
Sbjct: 1 MAKRGYKLRILFSLTEMKLEEFVAHSSNVNCLNIGKKTCRMYITGGDDYKVNLWAIGKPT 60
Query: 50 ALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFH 109
+LMSLCG +SPV+S+AFD+AEVLVL GASTGVIKLWDLEE+KMVRTLTGH+SNCTA+EFH
Sbjct: 61 SLMSLCGHTSPVESLAFDTAEVLVLGGASTGVIKLWDLEEAKMVRTLTGHRSNCTAIEFH 120
Query: 110 PFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVW 169
PFGEFFASG DTNLK+WDIRKKG +HTYKGHTRGI+TIRFTPDGRWVVSGG DNVVKVW
Sbjct: 121 PFGEFFASGSADTNLKLWDIRKKGTLHTYKGHTRGISTIRFTPDGRWVVSGGLDNVVKVW 180
Query: 170 DLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGV 229
DLTAGKLLHDFKFHEGHIRS+DFHPLEFLLATGSADRTVKFWDLETFELIGS RPE TGV
Sbjct: 181 DLTAGKLLHDFKFHEGHIRSLDFHPLEFLLATGSADRTVKFWDLETFELIGSARPEATGV 240
Query: 230 HAITFHPDGRTLFSGFDDNLKVYSWEPVICHDSVDMGWSTLGDLCINDGKLLGCSFYRNS 289
AI+FHPDGRTLF G DD+LKVYSWEPVICHDSVD+GWSTLGDLCI++ KLLGCS+YRNS
Sbjct: 241 RAISFHPDGRTLFCGLDDSLKVYSWEPVICHDSVDIGWSTLGDLCIHEEKLLGCSYYRNS 300
Query: 290 VGIWVADVSHVEPYGVGAPEPDQSICTEVKFNPPGSHSLEKVGIIGRSTSGFRSTSPDYE 349
V +WVADVS +EPYGVG P++S C E KF+ P S S +KV RSTS RS SPDYE
Sbjct: 301 VAVWVADVSLIEPYGVGFI-PEESDCIEKKFSIPKSDSPDKVRSGMRSTSHLRSLSPDYE 359
Query: 350 TKDIKTIYVDSTGGKPVASQKIGPLNSPKVVPPLDSEEISDLQTEKQNPAIGVPELSNGQ 409
+K+IK IYVDS GKPV+SQK+G L SPK V PLDS+E+S+ ++K+ P G ++G+
Sbjct: 360 SKEIKNIYVDSADGKPVSSQKVGSLTSPKRVLPLDSKEMSNPPSDKKIPVTGGNAKADGE 419
Query: 410 ALDKSFIVPSIVPQESPAGKDSSFSAGESITFSRTKPGMLLRPAHVQKPSNSKYDAERLS 469
A +KSF+VP++VP+++P K+SS S E++TFSRT+PGMLLRPAH+Q+ SNSK D E+LS
Sbjct: 420 AFNKSFVVPTVVPRDNPIEKNSSNSGRETVTFSRTRPGMLLRPAHMQRLSNSKNDVEKLS 479
Query: 470 TAAESESLNSKKSDLDSAVDPNVKTRFVSSDGARKSCEEKDCHIKTITGEIENIFSPQKP 529
A ESE+ ++ S+ SA+D +++ V +G +KS EEK K + + E SP+KP
Sbjct: 480 VALESETFSNMPSEKVSAMDLKLQSLNVLEEGVQKSYEEKSSDFKNVAEKFEKDLSPEKP 539
Query: 530 PKQEDGDKSRDCSKITNSVKFVNGVAVVPGRTRSLVERFERREKVNSNEDLAANVIPQTR 589
QE D+S + ++ SVK +NGVAVV GRTRSLVERFERREK +
Sbjct: 540 SSQEHCDESVNNNRAIPSVKIINGVAVVAGRTRSLVERFERREKFS-------------- 585
Query: 590 LSRNEDQAADVTPQTTLSSNEDHVANVTSQTRLNGNEYQAATAPQQTRLSSNIDPVA-NV 648
NEDQ+ +S E A +T+ T + P+ R P+A ++
Sbjct: 586 ---NEDQS---------TSMESQTAGLTNSTPTMSTNVTPLSLPEAGRKP----PIAISM 629
Query: 649 TPQTLPSGNE--DQAANVTPQTRPSSNEDQTANVIRQTR-----PSSNEDQAVIVNPQTR 701
TP+ +P + A N++P P + T + R P + + +V P+T
Sbjct: 630 TPRIVPETKTKPEIATNMSPHVFPEMDRTPTVATVVTPRVMDRIPVTATNMIPLVIPETD 689
Query: 702 RHSNEDQASNIAPYTRHDRNED--RATNITPQ--SKISRNQDQATNITSHMGLNSNENRA 757
R A+N+ +RN T++TP+ S+ R+ ATN+T H+ +
Sbjct: 690 R--TPIAATNMTRRVISERNRSPIATTDMTPEAISERGRSPSTATNMTCHVVHEMDRRTL 747
Query: 758 TNIPSRSRLNSREDQSTN 775
+ +++ R+ S+N
Sbjct: 748 PAMKEEPQISGRDSNSSN 765
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356549389|ref|XP_003543076.1| PREDICTED: katanin p80 WD40 repeat-containing subunit B1 homolog 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 808 bits (2088), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 396/600 (66%), Positives = 468/600 (78%), Gaps = 8/600 (1%)
Query: 1 MAKRGYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSP 60
MAKRGYK+QEFVAHSA+VNC++IGKKACR ITGGDD KVNLW IGKPT + SL G +SP
Sbjct: 1 MAKRGYKIQEFVAHSASVNCLNIGKKACRLFITGGDDHKVNLWTIGKPTPITSLSGHTSP 60
Query: 61 VDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCM 120
V+SVAFDS EVLVL GASTGVIKLWDLEE+KMVRT+ GH+SNCTAVEFHPFGEFFASG M
Sbjct: 61 VESVAFDSGEVLVLGGASTGVIKLWDLEEAKMVRTVAGHRSNCTAVEFHPFGEFFASGSM 120
Query: 121 DTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDF 180
DTNLKIWDIRKKGCIHTYKGH++GI+ I+FTPDGRWVVSGGFDNVVKVWDLTAGKLLHDF
Sbjct: 121 DTNLKIWDIRKKGCIHTYKGHSQGISIIKFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDF 180
Query: 181 KFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRT 240
KFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGS RPE TGV +I FHPDGR
Sbjct: 181 KFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSARPEATGVRSIAFHPDGRA 240
Query: 241 LFSGFDDNLKVYSWEPVICHDSVDMGWSTLGDLCINDGKLLGCSFYRNSVGIWVADVSHV 300
LF+G +D LKVYSWEPVICHD++DMGW+TLGDLCI+DGKLLGCSFYRNSVG+WVAD+S +
Sbjct: 241 LFTGHEDGLKVYSWEPVICHDTIDMGWTTLGDLCIHDGKLLGCSFYRNSVGVWVADISLI 300
Query: 301 EPYGVGAPEPDQSICTEVKFNPPGSHSLEKVGIIGRSTSGFRSTSPDYETKDIKTIYVDS 360
EPYG G +P ++ TE K GS LEKV + TSG RS SPD E+K+IK IY+DS
Sbjct: 301 EPYGTGL-DPKKNESTEQKLGLQGS-KLEKVEVNVGPTSGSRSMSPD-ESKEIKNIYIDS 357
Query: 361 TGGKPVASQKIGPLNSPKVVPPLDSEEISDLQTEKQNPAIGVPELSNGQALDKSFIVPSI 420
+GGKPV Q+ G L+S KV P + +EI +L T KQ+PA G SN QA+ KSFI P+I
Sbjct: 358 SGGKPVTLQRSGSLSSTKVDLPEEFKEICNLGTMKQSPATGARVKSNEQAIRKSFIAPNI 417
Query: 421 VPQESPAGKDSSFSAGESITFSRTKPGMLLRPAHVQKPSNSKYDAERLSTAAESESLNSK 480
VP+++P GK S+ S E+ITFS+TKPGMLLRPAHV++ S ++D +R S S +
Sbjct: 418 VPRDTPDGKVSAKSEKETITFSKTKPGMLLRPAHVRRASTGRFDVDRFSEDVNSGTFCDT 477
Query: 481 KSDLDSAVDPNVKTRFVSSDGARKSCEEKDCHIKTITGEIENIFSPQKPPKQEDGDKSRD 540
LDS +P + S + ++SCE+K IK++T + + SP + +Q D+S
Sbjct: 478 AIKLDSTKEPKFQPNLGSQNEVKESCEDKH-PIKSVTDKFDKTLSPSRFSEQTKCDESSL 536
Query: 541 CSKITNSVKFVNGVAVVPGRTRSLVERFERREKVNSNEDLAANVIPQTRLSR----NEDQ 596
C + + VK+VNGVAVV GRTRSLVERFERR+K+ NED +P +R NEDQ
Sbjct: 537 CKEEISPVKYVNGVAVVRGRTRSLVERFERRDKIQINEDQTTVFLPTINETREKVHNEDQ 596
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359497299|ref|XP_002266048.2| PREDICTED: katanin p80 WD40 repeat-containing subunit B1 homolog 1-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 803 bits (2074), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 379/545 (69%), Positives = 446/545 (81%), Gaps = 12/545 (2%)
Query: 1 MAKRGYKL-----------QEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPT 49
MAKRGYKL +EFVAH+ NVNC++IGKKACR LI+GGDD KVNLWAIGKPT
Sbjct: 1 MAKRGYKLRILFCLTKLNIEEFVAHTTNVNCLNIGKKACRLLISGGDDHKVNLWAIGKPT 60
Query: 50 ALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFH 109
+LMSLCG +SPV+SV FDSAEVLV AGASTGVIKLWDLEE+KMVRTLTGH+SNCTAVEFH
Sbjct: 61 SLMSLCGHTSPVESVTFDSAEVLVAAGASTGVIKLWDLEEAKMVRTLTGHRSNCTAVEFH 120
Query: 110 PFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVW 169
PFGEFFASG +DTNLK+WDIRKKGCIHTYKGHTRGI+TIRFTPDGRWVVSGGFDNVVKVW
Sbjct: 121 PFGEFFASGSLDTNLKVWDIRKKGCIHTYKGHTRGISTIRFTPDGRWVVSGGFDNVVKVW 180
Query: 170 DLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGV 229
DLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGS RPE TGV
Sbjct: 181 DLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSARPEATGV 240
Query: 230 HAITFHPDGRTLFSGFDDNLKVYSWEPVICHDSVDMGWSTLGDLCINDGKLLGCSFYRNS 289
+ITFHPDGRTLF G DD+LKVYSWEPV+CHD+VDMGWS LGD+CI++GKLLGCS+YRNS
Sbjct: 241 RSITFHPDGRTLFCGLDDSLKVYSWEPVVCHDAVDMGWSILGDICIHEGKLLGCSYYRNS 300
Query: 290 VGIWVADVSHVEPYGVGAPEPDQSICTEVKFNPPGSHSLEKVGIIGRSTSGFRSTSPDYE 349
VG+WVAD+S +EPYG G C E KF+ SHS+EKVG RSTSGFRS SPDY+
Sbjct: 301 VGVWVADISKIEPYGSGLLSKKNG-CVERKFDLQESHSVEKVGSSVRSTSGFRSMSPDYD 359
Query: 350 TKDIKTIYVDSTGGKPVASQKIGPLNSPKVVPPLDSEEISDLQTEKQNPAIGVPELSNGQ 409
TK+IK IYVDS+GG VASQK+ N+PKV+ P DS+EI++L T+K +P +G+ + G+
Sbjct: 360 TKEIKNIYVDSSGGNSVASQKVRSFNTPKVLFPSDSKEITNLPTQKHSPGVGLHAKTQGR 419
Query: 410 ALDKSFIVPSIVPQESPAGKDSSFSAGESITFSRTKPGMLLRPAHVQKPSNSKYDAERLS 469
A+ +SF+VPSIV +++ GKD + S ESIT +R GM L+ +H+++PSNSKY+AERL
Sbjct: 420 AITRSFVVPSIVTRDNSDGKDLANSRRESITPARANTGMSLKTSHIRRPSNSKYEAERLL 479
Query: 470 TAAESESLNSKKSDLDSAVDPNVKTRFVSSDGARKSCEEKDCHIKTITGEIENIFSPQKP 529
A ES S +S +DLDSA+ N +R V D A +SCEEK+ +I ++ + E + SPQ
Sbjct: 480 MAVESGSFDSMPNDLDSAMKQNFHSRLVVDDEASESCEEKNSNISSVAEKFEKVLSPQPS 539
Query: 530 PKQED 534
QE+
Sbjct: 540 SNQEN 544
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356555068|ref|XP_003545861.1| PREDICTED: katanin p80 WD40 repeat-containing subunit B1 homolog 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 800 bits (2067), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 399/620 (64%), Positives = 471/620 (75%), Gaps = 9/620 (1%)
Query: 1 MAKRGYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSP 60
MAKRGYK+QEFVAHSA+VNC++IGKKACR ITGGDD KVNLW IGKPT L SL G +SP
Sbjct: 1 MAKRGYKIQEFVAHSASVNCLNIGKKACRLFITGGDDHKVNLWTIGKPTFLTSLSGHTSP 60
Query: 61 VDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCM 120
V+SVAFDS EVLVL GASTGVIKLWDLEE+KMVRT+ GH+SNCTAVEFHPFGEFFASG M
Sbjct: 61 VESVAFDSGEVLVLGGASTGVIKLWDLEEAKMVRTVAGHRSNCTAVEFHPFGEFFASGSM 120
Query: 121 DTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDF 180
DTNLKIWDIRKKGCIHTYKGH++GI+TI+FTPDGRWVVSGGFDNVVKVWDLTAGKLLHDF
Sbjct: 121 DTNLKIWDIRKKGCIHTYKGHSQGISTIKFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDF 180
Query: 181 KFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRT 240
KFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGS R E TGV +I FHPDGRT
Sbjct: 181 KFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSARREATGVRSIAFHPDGRT 240
Query: 241 LFSGFDDNLKVYSWEPVICHDSVDMGWSTLGDLCINDGKLLGCSFYRNSVGIWVADVSHV 300
LF+G +D LKVYSWEPVICHD+VDMGW+TLGDLCI+D KLLGCSFYRNSVG+WVAD+S +
Sbjct: 241 LFTGHEDGLKVYSWEPVICHDTVDMGWTTLGDLCIHDEKLLGCSFYRNSVGVWVADISLI 300
Query: 301 EPYGVGAPEPDQSICTEVKFNPPGSHSLEKVGIIGRSTSGFRSTSPDYETKDIKTIYVDS 360
EPYG G +P ++ TE K GS LEKV + TSGFRS SPD E+K+IK IY+DS
Sbjct: 301 EPYGAGL-DPKKNEGTEQKLGLQGS-KLEKVEVNVGPTSGFRSMSPD-ESKEIKNIYIDS 357
Query: 361 TGGKPVASQKIGPLNSPKVVPPLDSEEISDLQTEKQNPAIGVPELSNGQALDKSFIVPSI 420
+GGKPV Q+ G L+S KV P + +EI +L T KQ+PA G SN QA+ KSFI P+I
Sbjct: 358 SGGKPVTLQRSGSLSSTKVDLPEEFKEICNLGTMKQSPATGARVKSNEQAIRKSFIAPNI 417
Query: 421 VPQESPAGKDSSFSAGESITFSRTKPGMLLRPAHVQKPSNSKYDAERLSTAAESESLNSK 480
VP+++P GK S+ S E+I+FS+TKPGMLLRPAHV++ S ++D +R S S +
Sbjct: 418 VPRDTPDGKVSAKSEKETISFSKTKPGMLLRPAHVRRASTGRFDVDRFSEDVNSRTFCDT 477
Query: 481 KSDLDSAVDPNVKTRFVSSDGARKSCEEKDCHIKTITGEIENIFSPQKPPKQEDGDKSRD 540
+P+ + + ++SCE+K IK +T + + SP + +Q D+S
Sbjct: 478 AIKSGITKEPSFQLNLGFQNEVKESCEDKH-PIKNVTDKFDKTLSPSRFSEQTKRDESSP 536
Query: 541 CSKITNSVKFVNGVAVVPGRTRSLVERFERREKVNSNEDLAANVIPQTRLSR----NEDQ 596
C + + VK+VNGVAVV GRTRSLVERFERREK+ +ED +P +R NEDQ
Sbjct: 537 CKEEISPVKYVNGVAVVRGRTRSLVERFERREKIQIDEDQTNVFLPTINETREKVHNEDQ 596
Query: 597 -AADVTPQTTLSSNEDHVAN 615
A TP E + N
Sbjct: 597 IKASPTPTAVFERRERNPLN 616
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296088927|emb|CBI38493.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 777 bits (2007), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 369/534 (69%), Positives = 427/534 (79%), Gaps = 28/534 (5%)
Query: 1 MAKRGYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSP 60
MAKRGYKLQEFVAH+ NVNC++IGKKACR LI+GGDD KVNLWAIGKPT+LMSLCG +SP
Sbjct: 1 MAKRGYKLQEFVAHTTNVNCLNIGKKACRLLISGGDDHKVNLWAIGKPTSLMSLCGHTSP 60
Query: 61 VDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCM 120
V+SV FDSAEVLV AGASTGVIKLWDLEE+KMVRTLTGH+SNCTAVEFHPFGEFFASG +
Sbjct: 61 VESVTFDSAEVLVAAGASTGVIKLWDLEEAKMVRTLTGHRSNCTAVEFHPFGEFFASGSL 120
Query: 121 DTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDF 180
DTNLK+WDIRKKGCIHTYKGHTRGI+TIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDF
Sbjct: 121 DTNLKVWDIRKKGCIHTYKGHTRGISTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDF 180
Query: 181 KFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRT 240
KFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGS RPE TGV +ITFHPDGRT
Sbjct: 181 KFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSARPEATGVRSITFHPDGRT 240
Query: 241 LFSGFDDNLKVYSWEPVICHDSVDMGWSTLGDLCINDGKLLGCSFYRNSVGIWVADVSHV 300
LF G DD+LKVYSWEPV+CHD+VDMGWS LGD+CI++GKLLGCS+YRNSVG+WVAD+S +
Sbjct: 241 LFCGLDDSLKVYSWEPVVCHDAVDMGWSILGDICIHEGKLLGCSYYRNSVGVWVADISKI 300
Query: 301 EPYGVGAPEPDQSICTEVKFNPPGSHSLEKVGIIGRSTSGFRSTSPDYETKDIKTIYVDS 360
EPYG G C E KF+ SHS+EKVG RSTSGFRS SPDY+TK+IK IYVDS
Sbjct: 301 EPYGSGLLSKKNG-CVERKFDLQESHSVEKVGSSVRSTSGFRSMSPDYDTKEIKNIYVDS 359
Query: 361 TGGKPVASQKIGPLNSPKVVPPLDSEEISDLQTEKQNPAIGVPELSNGQALDKSFIVPSI 420
+GG VASQK+ N+PK + G+A+ +SF+VPSI
Sbjct: 360 SGGNSVASQKVRSFNTPK---------------------------TQGRAITRSFVVPSI 392
Query: 421 VPQESPAGKDSSFSAGESITFSRTKPGMLLRPAHVQKPSNSKYDAERLSTAAESESLNSK 480
V +++ GKD + S ESIT +R GM L+ +H+++PSNSKY+AERL A ES S +S
Sbjct: 393 VTRDNSDGKDLANSRRESITPARANTGMSLKTSHIRRPSNSKYEAERLLMAVESGSFDSM 452
Query: 481 KSDLDSAVDPNVKTRFVSSDGARKSCEEKDCHIKTITGEIENIFSPQKPPKQED 534
+DLDSA+ N +R V D A +SCEEK+ +I ++ + E + SPQ QE+
Sbjct: 453 PNDLDSAMKQNFHSRLVVDDEASESCEEKNSNISSVAEKFEKVLSPQPSSNQEN 506
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449457803|ref|XP_004146637.1| PREDICTED: katanin p80 WD40 repeat-containing subunit B1 homolog [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 773 bits (1995), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 419/720 (58%), Positives = 497/720 (69%), Gaps = 45/720 (6%)
Query: 1 MAKRGYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSP 60
MAKRGYKLQEF AHS NVNC+SIGKKACR ITGGDD KVNLWAIGKP +LMSLCG ++P
Sbjct: 1 MAKRGYKLQEFAAHSGNVNCLSIGKKACRLFITGGDDYKVNLWAIGKPNSLMSLCGHTNP 60
Query: 61 VDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCM 120
V+SVAFDSAEVLVLAGAS+G IKLWDLEE+KMVRTL+GH+SNCTAVEFHPFGEFFASG
Sbjct: 61 VESVAFDSAEVLVLAGASSGAIKLWDLEEAKMVRTLSGHRSNCTAVEFHPFGEFFASGSR 120
Query: 121 DTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDF 180
DTNLKIWDIRKKGCIHTYKGHT+GI+TI+FTPDGRWVVSGGFD+ VKVWDLTAGKL+HDF
Sbjct: 121 DTNLKIWDIRKKGCIHTYKGHTQGISTIKFTPDGRWVVSGGFDSAVKVWDLTAGKLMHDF 180
Query: 181 KFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRT 240
KFHEG IRSIDFHPLEFLLATGSAD+TVKFWDLETFELIGSTRPE GV AITFHPDGRT
Sbjct: 181 KFHEGPIRSIDFHPLEFLLATGSADKTVKFWDLETFELIGSTRPEAAGVRAITFHPDGRT 240
Query: 241 LFSGFDDNLKVYSWEPVICHDSVDMGWSTLGDLCINDGKLLGCSFYRNSVGIWVADVSHV 300
LFSG D++LKVYSWEPVICHDSVDMGWSTLGDLCI+ GKLL CS YRNSVG+WVADV+ +
Sbjct: 241 LFSGLDESLKVYSWEPVICHDSVDMGWSTLGDLCIHAGKLLSCSSYRNSVGVWVADVALI 300
Query: 301 EPYGV----GAPEPDQSICTEVKFNPPGSHSLEKVGIIGRSTSGFRSTSPDYETKDIKTI 356
EPYG G EP + N S S + TS +S SPDYETK+IK I
Sbjct: 301 EPYGASSVSGQKEPKEQNLGSAFKNSLASKSTGSDLV----TSNLQSLSPDYETKEIKNI 356
Query: 357 YVDSTGGKPVASQKIGPLNSPKVVPPLDSEEISDLQTEKQNPAIGVPELSNGQALDKSFI 416
Y+D+TGGKPV+ QK L+SPK+V LDS+EIS ++KQN A V S+ + DK
Sbjct: 357 YIDTTGGKPVSPQKAESLSSPKIVFALDSKEISYNASKKQNLASRVEVKSSELSKDK--- 413
Query: 417 VPSIVPQESPAGKDSSFSAGESITFSRTKPGMLLRPAHVQKPSNSKYDAERLSTAAES-- 474
P ++P +SP KD S ESITFS+T+ GMLLRPAH++KPSNSK D E+LS + +S
Sbjct: 414 -PPVIPCDSPEVKDPPSSVRESITFSKTRRGMLLRPAHIRKPSNSKIDLEKLSVSVDSSR 472
Query: 475 ----------ESLN--SKKSDLDSAVDPNVKTRFVSSDGARKSCEEKDCHIKTITGEIEN 522
+S+N + +DL+ A N+KT VS C I E
Sbjct: 473 KTDLERLPVVDSVNVCNTTNDLNKAPVQNLKTSVVSEVIHVDPCGTNSDLISIEKFEKIP 532
Query: 523 IFSPQKPPKQEDGDKSRDCSKITNSVKFVNGVAVVPGRTRSLVERFERREKVNSNEDLAA 582
S + +QE +KS + S+ NSVKFVNGVAVVPGRTR+LVERFERREK N D+
Sbjct: 533 SVSAETTSEQETCNKSVENSEGANSVKFVNGVAVVPGRTRTLVERFERREKTN---DVQT 589
Query: 583 NVIP-------QTRLSRNEDQAADVTPQTTLSSNEDHVANVTSQTRLNGNEYQAATAPQQ 635
+ P +TR N + VTPQ L + + H T+ R++ + + +
Sbjct: 590 TISPSNVLEPEKTREQTNSLEVQVVTPQ-ILETEKTH--EQTNDFRVHEVTMPSHVSETE 646
Query: 636 TRL--SSNIDPVANVTPQTL--PSGNEDQAAN--VTPQTRPSSNEDQTANVIRQTRPSSN 689
TR +SN + A P + P +Q N V P + E + + + +P SN
Sbjct: 647 TRCERTSNYEVQAVAIPSHVSEPEKAREQTNNYEVRAMVIPRTPETKRMGINYEAKPRSN 706
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449488504|ref|XP_004158060.1| PREDICTED: katanin p80 WD40 repeat-containing subunit B1 homolog [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 755 bits (1950), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 389/605 (64%), Positives = 447/605 (73%), Gaps = 40/605 (6%)
Query: 1 MAKRGYKL--------------QEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIG 46
MAKRGYKL +EF AHS NVNC+SIGKKACR ITGGDD KVNLWAIG
Sbjct: 1 MAKRGYKLRILSNLIFLTYLKLEEFAAHSGNVNCLSIGKKACRLFITGGDDYKVNLWAIG 60
Query: 47 KPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAV 106
KP +LMSLCG ++PV+SVAFDSAEVLVLAGAS+G IKLWDLEE+KMVRTL+GH+SNCTAV
Sbjct: 61 KPNSLMSLCGHTNPVESVAFDSAEVLVLAGASSGAIKLWDLEEAKMVRTLSGHRSNCTAV 120
Query: 107 EFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVV 166
EFHPFGEFFASG DTNLKIWDIRKKGCIHTYKGHT+GI+TI+FTPDGRWVVSGGFD+ V
Sbjct: 121 EFHPFGEFFASGSRDTNLKIWDIRKKGCIHTYKGHTQGISTIKFTPDGRWVVSGGFDSAV 180
Query: 167 KVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEV 226
KVWDLTAGKL+HDFKFHEG IRSIDFHPLEFLLATGSAD+TVKFWDLETFELIGSTRPE
Sbjct: 181 KVWDLTAGKLMHDFKFHEGPIRSIDFHPLEFLLATGSADKTVKFWDLETFELIGSTRPEA 240
Query: 227 TGVHAITFHPDGRTLFSGFDDNLKVYSWEPVICHDSVDMGWSTLGDLCINDGKLLGCSFY 286
GV AITFHPDGRTLFSG D++LKVYSWEPVICHDSVDMGWSTLGDLCI+ GKLL CS Y
Sbjct: 241 AGVRAITFHPDGRTLFSGLDESLKVYSWEPVICHDSVDMGWSTLGDLCIHAGKLLSCSSY 300
Query: 287 RNSVGIWVADVSHVEPYGV----GAPEPDQSICTEVKFNPPGSHSLEKVGIIGRSTSGFR 342
RNSVG+WVADV+ +EPYG G EP + N S S + TS +
Sbjct: 301 RNSVGVWVADVALIEPYGASSVSGQKEPKEQNLGSAFKNSLASKSTGSDLV----TSNLQ 356
Query: 343 STSPDYETKDIKTIYVDSTGGKPVASQKIGPLNSPKVVPPLDSEEISDLQTEKQNPAIGV 402
S SPDYETK+IK IY+D+TGGKPV+ QK L+SPK+V LDS+EIS ++KQN A V
Sbjct: 357 SLSPDYETKEIKNIYIDTTGGKPVSPQKAESLSSPKIVFALDSKEISYNASKKQNLASRV 416
Query: 403 PELSNGQALDKSFIVPSIVPQESPAGKDSSFSAGESITFSRTKPGMLLRPAHVQKPSNSK 462
S+ + DK P ++P +SP KD S ESITFS+T+ GMLLRPAH++KPSNSK
Sbjct: 417 EVKSSELSKDK----PPVIPCDSPEVKDPPSSVRESITFSKTRRGMLLRPAHIRKPSNSK 472
Query: 463 YDAERLSTAAES------------ESLN--SKKSDLDSAVDPNVKTRFVSSDGARKSCEE 508
D E+LS + +S +S+N + +DL+ A N+KT VS C
Sbjct: 473 IDLEKLSVSVDSSRKTDLERLPVVDSVNVCNTTNDLNKAPVQNLKTSVVSEVIHVDPCGT 532
Query: 509 KDCHIKTITGEIENIFSPQKPPKQEDGDKSRDCSKITNSVKFVNGVAVVPGRTRSLVERF 568
I E S + +QE +KS + S+ NSVKFVNGVAVVPGRTR+LVERF
Sbjct: 533 NSDLISIEKFEKIPSVSAETTSEQETCNKSVENSEGANSVKFVNGVAVVPGRTRTLVERF 592
Query: 569 ERREK 573
ERREK
Sbjct: 593 ERREK 597
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1074 | ||||||
| TAIR|locus:2154438 | 837 | AT5G23430 "AT5G23430" [Arabido | 0.283 | 0.363 | 0.710 | 8e-168 | |
| TAIR|locus:2150788 | 839 | AT5G08390 "AT5G08390" [Arabido | 0.486 | 0.623 | 0.475 | 1.5e-166 | |
| TAIR|locus:2202129 | 1021 | AT1G11160 "AT1G11160" [Arabido | 0.815 | 0.857 | 0.413 | 4.9e-156 | |
| RGD|1311256 | 655 | Katnb1 "katanin p80 (WD repeat | 0.308 | 0.505 | 0.453 | 2.7e-107 | |
| UNIPROTKB|Q9BVA0 | 655 | KATNB1 "Katanin p80 WD40 repea | 0.290 | 0.476 | 0.474 | 5.7e-107 | |
| UNIPROTKB|E2QTQ5 | 655 | KATNB1 "Uncharacterized protei | 0.290 | 0.476 | 0.471 | 1.2e-106 | |
| MGI|MGI:1921437 | 658 | Katnb1 "katanin p80 (WD40-cont | 0.308 | 0.503 | 0.453 | 1.7e-103 | |
| UNIPROTKB|A6QQU1 | 663 | KATNB1 "KATNB1 protein" [Bos t | 0.465 | 0.754 | 0.362 | 2.2e-103 | |
| ZFIN|ZDB-GENE-040426-1954 | 694 | katnb1 "katanin p80 (WD repeat | 0.278 | 0.430 | 0.468 | 8.4e-102 | |
| UNIPROTKB|Q5ZIU8 | 657 | KATNB1 "Katanin p80 WD40 repea | 0.283 | 0.462 | 0.470 | 7.5e-101 |
| TAIR|locus:2154438 AT5G23430 "AT5G23430" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1228 (437.3 bits), Expect = 8.0e-168, Sum P(2) = 8.0e-168
Identities = 216/304 (71%), Positives = 260/304 (85%)
Query: 3 KRGYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVD 62
KR YKLQEFVAHSA VNC+ IG+K+ R L+TGG+D KVNLWAIGKP A++SL G SS +D
Sbjct: 4 KRAYKLQEFVAHSAAVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLYGHSSGID 63
Query: 63 SVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDT 122
SV FD++EVLV AGA++G IKLWDLEE+K+VRTLTGH+SNC +V+FHPFGEFFASG +DT
Sbjct: 64 SVTFDASEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDT 123
Query: 123 NLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKF 182
NLKIWDIRKKGCIHTYKGHTRG+N +RFTPDGRWVVSGG DN+VKVWDLTAGKLL +FK
Sbjct: 124 NLKIWDIRKKGCIHTYKGHTRGVNVLRFTPDGRWVVSGGEDNIVKVWDLTAGKLLTEFKS 183
Query: 183 HEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLF 242
HEG I+S+DFHP EFLLATGSADRTVKFWDLETFELIGS PE GV ++F+PDG+T+
Sbjct: 184 HEGQIQSLDFHPHEFLLATGSADRTVKFWDLETFELIGSGGPETAGVRCLSFNPDGKTVL 243
Query: 243 SGFDDNLKVYSWEPVICHDSVDMGWSTLGDLCINDGKLLGCSFYRNSVGIWVADVSHVEP 302
G ++LK++SWEP+ CHD VD+GWS L D+ +++GKLLGCS+ ++ VG+WV D+S EP
Sbjct: 244 CGLQESLKIFSWEPIRCHDGVDVGWSRLSDMNVHEGKLLGCSYNQSCVGVWVVDLSRTEP 303
Query: 303 YGVG 306
G
Sbjct: 304 CMAG 307
|
|
| TAIR|locus:2150788 AT5G08390 "AT5G08390" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1240 (441.6 bits), Expect = 1.5e-166, Sum P(2) = 1.5e-166
Identities = 262/551 (47%), Positives = 341/551 (61%)
Query: 3 KRGYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVD 62
KR YKLQEFVAHSA VNC+ IG+K+ R L+TGG+D KVNLWAIGKP A++SL G SS +D
Sbjct: 4 KRAYKLQEFVAHSAAVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLYGHSSGID 63
Query: 63 SVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDT 122
SV FD++E LV AGA++G IKLWDLEE+K+VRTLTGH+SNC +V FHPFGEFFASG +DT
Sbjct: 64 SVTFDASEGLVAAGAASGTIKLWDLEEAKVVRTLTGHRSNCVSVNFHPFGEFFASGSLDT 123
Query: 123 NLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKF 182
NLKIWDIRKKGCIHTYKGHTRG+N +RFTPDGRW+VSGG DNVVKVWDLTAGKLLH+FK
Sbjct: 124 NLKIWDIRKKGCIHTYKGHTRGVNVLRFTPDGRWIVSGGEDNVVKVWDLTAGKLLHEFKS 183
Query: 183 HEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLF 242
HEG I+S+DFHP EFLLATGSAD+TVKFWDLETFELIGS E TGV +TF+PDG+++
Sbjct: 184 HEGKIQSLDFHPHEFLLATGSADKTVKFWDLETFELIGSGGTETTGVRCLTFNPDGKSVL 243
Query: 243 SGFDDNLKVYSWEPVICHDSVDMGWSTLGDLCINDGKLLGCSFYRNSVGIWVADVSHVEP 302
G ++LK++SWEP+ CHD VD+GWS L D+ +++GKLLGCS+ +N VG+WV D+S EP
Sbjct: 244 CGLQESLKIFSWEPIRCHDGVDVGWSNLSDMNVHEGKLLGCSYNQNCVGVWVVDLSRTEP 303
Query: 303 YGVGAPEPDQ--SICTEVKFNPPGSHSLEKVGIIGRSTSGFRSTSPDY-ETKDIKTIYVD 359
GA + + + + G + I+G+ G + P ETK + + V
Sbjct: 304 MSGGATQSNSHPEKTSGSGRDQAGLNDNSSKVILGK-LPGSQKVDPLLKETKSLGKLSVS 362
Query: 360 STG----------GKPVASQKIGPL-NSPKVVPPLDSEEISDLQTEKQNPAIGVPELSNG 408
G+ SQ PL PK + + SD T K++ + S G
Sbjct: 363 QNSDPLPKDTKSTGRSSVSQSSDPLVKEPKPLGRFSATHSSD--TVKESRTLS----STG 416
Query: 409 QALDKSFIVPSIVPQESPAGKDSSF--SAGESITFSRTKPGMLLRPAHVQKPSNSKYDAE 466
D V +S +G + +A F + P P V K
Sbjct: 417 SVSDSPHRVTLTSAPKSASGISTVVPNAAASKRNFGKANPKA--NPPVVNKEDYFPVIVP 474
Query: 467 RLSTAAESESLNSKKSDLDSAVDP-NVKTRFVSSDGARKSCEEKDCHIKTITGEIENIFS 525
R E S + + D+ P +++++ S S E D ++ ++
Sbjct: 475 RTEPIIEQASESRAELDIIGRTMPYSLQSKAADSRRLSSSRNEPDLPTSSLLERSQS--Q 532
Query: 526 PQKPPKQEDGD 536
P +P +DG+
Sbjct: 533 PIEPITLQDGN 543
|
|
| TAIR|locus:2202129 AT1G11160 "AT1G11160" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1521 (540.5 bits), Expect = 4.9e-156, P = 4.9e-156
Identities = 404/976 (41%), Positives = 539/976 (55%)
Query: 1 MAKRGYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSP 60
MAKRGYKLQEFVAHS NVNC+SIGKK R L+TGGDD KVNLW+IGK T+ MSLCG +SP
Sbjct: 1 MAKRGYKLQEFVAHSGNVNCLSIGKKTSRLLLTGGDDYKVNLWSIGKTTSPMSLCGHTSP 60
Query: 61 VDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCM 120
VDSVAF+S EVLVLAGAS+GVIKLWDLEESKMVR TGH+SNC+AVEFHPFGEF ASG
Sbjct: 61 VDSVAFNSEEVLVLAGASSGVIKLWDLEESKMVRAFTGHRSNCSAVEFHPFGEFLASGSS 120
Query: 121 DTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDF 180
DTNL++WD RKKGCI TYKGHTRGI+TI F+PDGRWVVSGG DNVVKVWDLTAGKLLH+F
Sbjct: 121 DTNLRVWDTRKKGCIQTYKGHTRGISTIEFSPDGRWVVSGGLDNVVKVWDLTAGKLLHEF 180
Query: 181 KFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRT 240
K HEG IRS+DFHPLEFLLATGSADRTVKFWDLETFELIG+TRPE TGV AI FHPDG+T
Sbjct: 181 KCHEGPIRSLDFHPLEFLLATGSADRTVKFWDLETFELIGTTRPEATGVRAIAFHPDGQT 240
Query: 241 LFSGFDDNLKVYSWEPVICHDSVDMGWSTLGDLCINDGKLLGCSFYRNSVGIWVADVSHV 300
LF G DD LKVYSWEPVIC D VDMGWSTLGD CIN+GK +GCS+YRNSVGIWV+D+S +
Sbjct: 241 LFCGLDDGLKVYSWEPVICRDGVDMGWSTLGDFCINEGKFIGCSYYRNSVGIWVSDISEL 300
Query: 301 EPYGVGAPEPDQSICTEVKFNPPGSHSLEKVGIIGRSTSGFR-STSPDYETKDIKTIYVD 359
EPYG A D++ C +F+ S E++G SG R S SPDYET++IK IYVD
Sbjct: 301 EPYG--AVSEDKNECMVKRFSVLNDQS-ERMG------SGPRGSVSPDYETREIKNIYVD 351
Query: 360 STGGKPVASQKIGPLNSPKVVPPLDSEEISDLQTEKQNPAIGVP---ELSNGQALDKSFI 416
STGG +Q G L K PL+S +++ + +EKQN A P + S+ S
Sbjct: 352 STGGNLNVAQNPGSL---KATLPLESGKVATMVSEKQNAAYFGPAGDKYSSTSRDSDSGE 408
Query: 417 VPSIVPQES-PAGKDSS------FSAGESIT-FSRTKPGMLLRPAHVQKPSNSKYDAERL 468
S +ES P + S +++ F +K +++ A +K + + +
Sbjct: 409 ESSYSERESIPFSRTKSGMLLRPAHVRKTLAKFEESKQSAVVQSATRKKSGLAVEEEPQT 468
Query: 469 STAAESESLNSKKSDLDSAVDPNVKTRFVSSDGARKSCEEKDCHIKTITGEIENIFSPQK 528
A SE SK D + ++ + +F EK + T E +F K
Sbjct: 469 QNAFLSEQNASKPFDAEDSIIKGITNKF-----------EKALSSEPPTDEANRMFL--K 515
Query: 529 PPK--QEDGDKSRDCSKITNS--VKFVNG-------VAVVPGRTRSLVERFERR-EKVNS 576
PP+ + K D + ++ F G V +P +T ++ R + E+ N+
Sbjct: 516 PPRIHRSSNSKYNDTRRAMSADPATFGKGGMENSGDVEDIPSKTERVLSREKPGDEQKNT 575
Query: 577 NEDLAANVIPQTRLSRNEDQAADVTPQTT--LSSNEDHVANVTSQTRLNGNEYQAATAPQ 634
+ + ++ + + T E + T + N P+
Sbjct: 576 EYPSGSRELNPVKIVEGVNVVSGRTRSLVEKFERGEKTTHTEGASTTIEQNNNAVQEDPR 635
Query: 635 QTRLSSNIDPV-----ANVTP-QTLPSG-NEDQAANVTPQTRPSSNEDQTANVIRQTRPS 687
+T + PV A TP + +P N D +NVT P + Q A R S
Sbjct: 636 KTSRQTGETPVISTRRARSTPARVMPIVLNRD--SNVTSDEPPLT---QPA------RTS 684
Query: 688 SNEDQAVIVNPQTRRHSNEDQASNIAPYTRHDRNEDRATNITPQSKISRNQDQATNITSH 747
S VI+N + + D+ S +A T+ R I P ++ NQ ATNITS
Sbjct: 685 SFPVMPVILNQAS--NVTYDEPS-VA-LTQESRTSH--ARILP---VTFNQ--ATNITSE 733
Query: 748 MGLNSNENRATNIPSRSR-LNSREDQSTNTPSQTIVNGAENKATKTPTQMRLKSSENQVT 806
+ + N +R R + + S P ++ + A PT +L S N +
Sbjct: 734 EASVTLRRQRRNSAARVRPVLLSQATSHECPVTSVRPLRTSPARVMPT--KLNQSVNMTS 791
Query: 807 STPPRARLN--SSIEGQATNIPIRRRFNRNVDQT--TNVT--------RHRRSISNTDQA 854
T A ++ S + AT I + + +D+T T + + +IS+ +
Sbjct: 792 DTSHIASMHRVSPTQMLATPTVIDQVADMTLDETHATQIQPACDNMPQKEEPNISDREDD 851
Query: 855 TSTTAHVAVKNNDDIATVITPHVTALSYER----TSTPKGEPQISGRDTPVANEGEAVES 910
+ T ++ + +N+ ++T + +T L R S KG + T + + + +
Sbjct: 852 SDITENLMLTHNEFLST-LQSRLTKLQIVRHFWERSDVKGAIGALRKLTDQSVQADVISI 910
Query: 911 LMETHDIFISTLRSRL 926
L E +I + S+L
Sbjct: 911 LTEKIEILTLDMFSQL 926
|
|
| RGD|1311256 Katnb1 "katanin p80 (WD repeat containing) subunit B 1" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 864 (309.2 bits), Expect = 2.7e-107, Sum P(3) = 2.7e-107
Identities = 150/331 (45%), Positives = 231/331 (69%)
Query: 1 MAKRGYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSP 60
+ K +KLQE VAH++NV+ + +GK + R L TGGDD +VNLW+I KP +MSL G +SP
Sbjct: 6 VTKTAWKLQEIVAHASNVSSLVLGKASGRLLATGGDDCRVNLWSINKPNCIMSLTGHTSP 65
Query: 61 VDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCM 120
V+SV ++ E L++AG+ +G I++WDLE +K++RTL GHK+N +++FHP+GEF ASG
Sbjct: 66 VESVRLNTPEELIVAGSQSGSIRVWDLEAAKILRTLMGHKANICSLDFHPYGEFVASGSQ 125
Query: 121 DTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDF 180
DTN+K+WDIR+KGC+ Y+GH++ + +RF+PDG+W+ S D+ VK+WDLTAGK++ +F
Sbjct: 126 DTNIKLWDIRRKGCVFRYRGHSQAVRCLRFSPDGKWLASAADDHTVKLWDLTAGKMMSEF 185
Query: 181 KFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRT 240
H G + ++FHP E+LLA+GS+DRT++FWDLE F+++ E V ++ F+PDG
Sbjct: 186 PGHTGPVNVVEFHPNEYLLASGSSDRTIRFWDLEKFQVVSCIEGEPGPVRSVLFNPDGCC 245
Query: 241 LFSGFDDNLKVYSWEPVICHDSVDMGWSTLGDLCINDGKLLGCSFYRNSVGIWVADVSHV 300
L+SG D+L+VY WEP C D V + W + DL I + +L+G +F +++V +V D++ V
Sbjct: 246 LYSGCQDSLRVYGWEPERCFDVVLVNWGKVADLAICNDQLIGVAFSQSNVSSYVVDLTRV 305
Query: 301 EPYGVGAPEPDQSICTEVKFNPPGSHSLEKV 331
G +P Q+ + + P SL ++
Sbjct: 306 TRTGTVTQDPVQASQPQTQQTPNPGVSLRRI 336
|
|
| UNIPROTKB|Q9BVA0 KATNB1 "Katanin p80 WD40 repeat-containing subunit B1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 859 (307.4 bits), Expect = 5.7e-107, Sum P(3) = 5.7e-107
Identities = 148/312 (47%), Positives = 224/312 (71%)
Query: 1 MAKRGYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSP 60
+ K +KLQE VAH++NV+ + +GK + R L TGGDD +VNLW+I KP +MSL G +SP
Sbjct: 6 VTKTAWKLQEIVAHASNVSSLVLGKASGRLLATGGDDCRVNLWSINKPNCIMSLTGHTSP 65
Query: 61 VDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCM 120
V+SV ++ E L++AG+ +G I++WDLE +K++RTL GHK+N +++FHP+GEF ASG
Sbjct: 66 VESVRLNTPEELIVAGSQSGSIRVWDLEAAKILRTLMGHKANICSLDFHPYGEFVASGSQ 125
Query: 121 DTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDF 180
DTN+K+WDIR+KGC+ Y+GH++ + +RF+PDG+W+ S D+ VK+WDLTAGK++ +F
Sbjct: 126 DTNIKLWDIRRKGCVFRYRGHSQAVRCLRFSPDGKWLASAADDHTVKLWDLTAGKMMSEF 185
Query: 181 KFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRT 240
H G + ++FHP E+LLA+GS+DRT++FWDLE F+++ E V ++ F+PDG
Sbjct: 186 PGHTGPVNVVEFHPNEYLLASGSSDRTIRFWDLEKFQVVSCIEGEPGPVRSVLFNPDGCC 245
Query: 241 LFSGFDDNLKVYSWEPVICHDSVDMGWSTLGDLCINDGKLLGCSFYRNSVGIWVADVSHV 300
L+SG D+L+VY WEP C D V + W + DL I + +L+G +F +++V +V D++ V
Sbjct: 246 LYSGCQDSLRVYGWEPERCFDVVLVNWGKVADLAICNDQLIGVAFSQSNVSSYVVDLTRV 305
Query: 301 EPYGVGAPEPDQ 312
G A +P Q
Sbjct: 306 TRTGTVARDPVQ 317
|
|
| UNIPROTKB|E2QTQ5 KATNB1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 859 (307.4 bits), Expect = 1.2e-106, Sum P(3) = 1.2e-106
Identities = 147/312 (47%), Positives = 224/312 (71%)
Query: 1 MAKRGYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSP 60
+ K +KLQE VAH++NV+ + +GK + R L TGGDD +VNLW+I KP +MSL G +SP
Sbjct: 6 VTKTAWKLQEIVAHASNVSSLVLGKASGRLLATGGDDCRVNLWSINKPNCIMSLTGHTSP 65
Query: 61 VDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCM 120
V+SV ++ E L++AG+ +G I++WDLE +K++RTL GHK+N +++FHP+GEF ASG
Sbjct: 66 VESVRLNTPEELIVAGSQSGSIRVWDLEAAKILRTLMGHKANICSLDFHPYGEFVASGSQ 125
Query: 121 DTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDF 180
DTN+K+WDIR+KGC+ Y+GH++ + +RF+PDG+W+ S D+ VK+WDLTAGK++ +F
Sbjct: 126 DTNIKLWDIRRKGCVFRYRGHSQAVRCLRFSPDGKWLASAADDHTVKLWDLTAGKMMSEF 185
Query: 181 KFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRT 240
H G + ++FHP E+LLA+GS+DRT++FWDLE F+++ E V ++ F+PDG
Sbjct: 186 PGHTGPVNVVEFHPNEYLLASGSSDRTIRFWDLEKFQVVSCIEGEPGPVRSVLFNPDGCC 245
Query: 241 LFSGFDDNLKVYSWEPVICHDSVDMGWSTLGDLCINDGKLLGCSFYRNSVGIWVADVSHV 300
L+SG D+L+VY WEP C D V + W + DL + + +L+G +F +++V +V D++ V
Sbjct: 246 LYSGCQDSLRVYGWEPERCFDVVLVSWGKVADLAVCNDQLIGVAFSQSNVSSYVVDLTRV 305
Query: 301 EPYGVGAPEPDQ 312
G A +P Q
Sbjct: 306 TRTGTVAQDPVQ 317
|
|
| MGI|MGI:1921437 Katnb1 "katanin p80 (WD40-containing) subunit B 1" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 858 (307.1 bits), Expect = 1.7e-103, Sum P(2) = 1.7e-103
Identities = 150/331 (45%), Positives = 230/331 (69%)
Query: 1 MAKRGYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSP 60
+ K +KLQE VAH++NV+ + +GK + R L TGGDD +VNLW+I KP +MSL G +SP
Sbjct: 6 VTKTAWKLQEIVAHASNVSSLVLGKASGRLLATGGDDCRVNLWSINKPNCIMSLTGHTSP 65
Query: 61 VDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCM 120
V+SV ++ E L++AG+ +G I++WDLE +K++RTL GHK+N +++FHP+GEF ASG
Sbjct: 66 VESVRLNTPEELIVAGSQSGSIRVWDLEAAKILRTLMGHKANICSLDFHPYGEFVASGSQ 125
Query: 121 DTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDF 180
DTN+K+WDIR+KGC+ Y+GH++ + +RF+PDG+W+ S D+ VK+WDLTAGK++ +F
Sbjct: 126 DTNIKLWDIRRKGCVFRYRGHSQAVRCLRFSPDGKWLASAADDHTVKLWDLTAGKMMSEF 185
Query: 181 KFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRT 240
H G + ++FHP E+LLA+GS+DRT++FWDLE F+++ E V ++ F+PDG
Sbjct: 186 PGHTGPVNVVEFHPNEYLLASGSSDRTIRFWDLEKFQVVSCIEGEPGPVRSVLFNPDGCC 245
Query: 241 LFSGFDDNLKVYSWEPVICHDSVDMGWSTLGDLCINDGKLLGCSFYRNSVGIWVADVSHV 300
L+SG D+L+VY WEP C D V + W + DL I + +L+G +F +++V +V D++ V
Sbjct: 246 LYSGCQDSLRVYGWEPERCFDVVLVNWGKVADLAICNDQLIGVAFSQSNVSSYVVDLTRV 305
Query: 301 EPYGVGAPEPDQSICTEVKFNPPGSHSLEKV 331
G +P Q+ + P SL ++
Sbjct: 306 TRTGTVTQDPVQANQPLTQQTPNPGVSLRRI 336
|
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| UNIPROTKB|A6QQU1 KATNB1 "KATNB1 protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 863 (308.9 bits), Expect = 2.2e-103, Sum P(2) = 2.2e-103
Identities = 194/535 (36%), Positives = 296/535 (55%)
Query: 1 MAKRGYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSP 60
+ K +KLQE VAH++NV+ + +GK + R L TGGDD +VNLW+I KP +MSL G +SP
Sbjct: 6 VTKTAWKLQEIVAHASNVSSLVLGKASGRLLATGGDDCRVNLWSINKPNCIMSLTGHTSP 65
Query: 61 VDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCM 120
V+SV ++ E L++AG+ +G I++WDLE +K++RTL GHK+N +++FHP+GEF ASG
Sbjct: 66 VESVRLNTPEELIVAGSQSGSIRVWDLEAAKILRTLMGHKANICSLDFHPYGEFVASGSQ 125
Query: 121 DTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDF 180
DTN+K+WDIR+KGC+ Y+GH++ + +RF+PDG+W+ S D+ VK+WDLTAGK++ +F
Sbjct: 126 DTNIKLWDIRRKGCVFRYRGHSQAVRCLRFSPDGKWLASAADDHTVKLWDLTAGKMMSEF 185
Query: 181 KFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRT 240
H G + ++FHP E+LLA+GS+DRT++FWDLE F+++ E V +I F+PDG
Sbjct: 186 PGHTGPVNVVEFHPNEYLLASGSSDRTIRFWDLEKFQVVSCIEGEPGPVRSILFNPDGCC 245
Query: 241 LFSGFDDNLKVYSWEPVICHDSVDMGWSTLGDLCINDGKLLGCSFYRNSVGIWVADVSHV 300
L+SG D+L+VY WEP C D V + W + DL I + +L+G +F +++V +V D++ V
Sbjct: 246 LYSGCQDSLRVYGWEPERCFDVVLVHWGKVADLAICNNQLIGVAFSQSNVSSYVVDLTRV 305
Query: 301 EPYGVGAPEPDQSICTEVKFNPPGSHSLEKV------------GIIGRSTSGFRSTSPDY 348
G A +P Q + P S L ++ + S S RS S +
Sbjct: 306 TRTGTVARDPVQDSRPPTQQPPHPSAPLRRIYERPSTACSKPQRVKQNSESERRSPSSE- 364
Query: 349 ETKDIKTIYVDSTGGKPVASQKIGPLNSPKVVPPLDSEEISDLQTEKQNPAIGVPELSNG 408
+ +D + + + ++ P NS PP SE + + A
Sbjct: 365 DDRDERESRAEIQNAEDY-NEIFQPKNSISRTPPRRSEPFP--APPEDDMATAKEAAKPS 421
Query: 409 QALDKSFIVPSIVPQESPAGKDSSFSAGESITFSRTKPGMLLRPAHVQKPSNSKYDAERL 468
A D F VP+I P G AG SR P + PA +P+ +
Sbjct: 422 PATDAQFPVPNICP-----G-----GAGTLEVLSRP-PVVTSTPAPKAEPA--------I 462
Query: 469 STAAESESLNSKKSDLDSAVDPNVKTRFVSSDGARKSCEEKDCHIKTITGEIENI 523
A +E + K SD AV + V D + + D +T +N+
Sbjct: 463 FPATRNEPIGLKASDFLPAVKIPQQAELVDEDAMSQIRKGHDTMCVVLTSRHKNL 517
|
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| ZFIN|ZDB-GENE-040426-1954 katnb1 "katanin p80 (WD repeat containing) subunit B 1" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 825 (295.5 bits), Expect = 8.4e-102, Sum P(2) = 8.4e-102
Identities = 140/299 (46%), Positives = 214/299 (71%)
Query: 6 YKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVA 65
+KLQE VAHS+NV+ + +GK + R L TGG+D +VN+WA+ KP +MSL G +S V +
Sbjct: 11 WKLQEIVAHSSNVSSLVLGKSSGRLLATGGEDCRVNIWAVSKPNCIMSLTGHTSAVGCIQ 70
Query: 66 FDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLK 125
F+S+E V+AG+ +G ++LWDLE +K++RTL GHK++ ++++FHP GE+ ASG +D+N+K
Sbjct: 71 FNSSEERVVAGSLSGSLRLWDLEAAKILRTLMGHKASISSLDFHPMGEYLASGSVDSNIK 130
Query: 126 IWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEG 185
+WD+R+KGC+ YKGHT+ + + F+PDG+W+ S D+ VK+WDL AGK++ +F H
Sbjct: 131 LWDVRRKGCVFRYKGHTQAVRCLAFSPDGKWLASASDDSTVKLWDLIAGKMITEFTSHTS 190
Query: 186 HIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGF 245
+ + FHP E+LLA+GSADRTVK WDLE F +IGS+ E V ++ F+PDG L+SG
Sbjct: 191 AVNVVQFHPNEYLLASGSADRTVKLWDLEKFNMIGSSEGETGVVRSVLFNPDGSCLYSGS 250
Query: 246 DDNLKVYSWEPVICHDSVDMGWSTLGDLCINDGKLLGCSFYRNSVGIWVADVSHVEPYG 304
++ L+VY WEP C D V +GW + DL I++ +++ S+ +V +V D++ V+ G
Sbjct: 251 ENTLRVYGWEPDRCFDVVHVGWGKVSDLAISNNQMIAVSYSHTNVSWYVVDLNRVKKSG 309
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| UNIPROTKB|Q5ZIU8 KATNB1 "Katanin p80 WD40 repeat-containing subunit B1" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 849 (303.9 bits), Expect = 7.5e-101, Sum P(2) = 7.5e-101
Identities = 143/304 (47%), Positives = 215/304 (70%)
Query: 1 MAKRGYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSP 60
+ K +KLQE VAHS+NV+ + +GK R L TGGDD +VN+W++ KP +MSL G ++P
Sbjct: 6 VTKTAWKLQEIVAHSSNVSSLVLGKSTGRLLATGGDDCRVNVWSVNKPNCVMSLTGHTTP 65
Query: 61 VDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCM 120
++S+ + E L++AG+ +G I++WDLE +K++RTL GHK+N +++FHP+G F ASG +
Sbjct: 66 IESLQISAKEELIVAGSQSGSIRVWDLEAAKILRTLLGHKANICSLDFHPYGSFVASGSL 125
Query: 121 DTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDF 180
DT++K+WD+R+KGCI YK HT+ + +RF+PDG+W+ S D+ VK+WDLTAGK++ +F
Sbjct: 126 DTDIKLWDVRRKGCIFKYKSHTQAVRCLRFSPDGKWLASAADDHTVKLWDLTAGKVMFEF 185
Query: 181 KFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRT 240
H G + ++FHP E+LLA+GS+DRT++FWDLE F ++ E T V I F+PDG
Sbjct: 186 TGHSGPVNVVEFHPSEYLLASGSSDRTIRFWDLEKFHVVSCIEEEATPVRCILFNPDGCC 245
Query: 241 LFSGFDDNLKVYSWEPVICHDSVDMGWSTLGDLCINDGKLLGCSFYRNSVGIWVADVSHV 300
L+ GF D+L+VY WEP C D V + W + DL + +L+G SF +++V +V D+S V
Sbjct: 246 LYGGFQDSLRVYGWEPERCFDVVVVNWGKVADLSVCHNQLIGVSFAQSTVSSFVVDLSRV 305
Query: 301 EPYG 304
G
Sbjct: 306 TKSG 309
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | AT1G61210 | WD-40 repeat family protein / katanin p80 subunit, putative; WD-40 repeat family protein / katanin p80 subunit, putative; FUNCTIONS IN- nucleotide binding; LOCATED IN- CUL4 RING ubiquitin ligase complex, heterotrimeric G-protein complex; EXPRESSED IN- 10 plant structures; EXPRESSED DURING- 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s- WD40 repeat-like (InterPro-IPR011046), WD40 repeat, region (InterPro-IPR017986), WD40/YVTN repeat-like (InterPro-IPR015943), WD40 repeat (InterPro-IPR001680); BES [...] (1180 aa) | |||||||||
(Arabidopsis thaliana) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | DDB1B | DDB1B (Damaged DNA Binding Protein 1 B); damaged DNA binding / protein binding; One of two clos [...] (1088 aa) | • | • | 0.884 | ||||||
 | DDB1A | DDB1A (DAMAGED DNA BINDING PROTEIN 1A); DNA binding / protein binding; Structurally similar to [...] (1088 aa) | • | • | 0.873 | ||||||
 | ERH3 | ERH3 (ECTOPIC ROOT HAIR 3); ATP binding / nucleoside-triphosphatase/ nucleotide binding; encode [...] (523 aa) | • | 0.869 | |||||||
 | CUL4 | CUL4 (CULLIN4); protein binding / ubiquitin-protein ligase; Arabidopsis CULLIN4 (CUL4) forms an [...] (792 aa) | • | 0.847 | |||||||
 | AT5G49430 | transducin family protein / WD-40 repeat family protein; transducin family protein / WD-40 repe [...] (1677 aa) | • | • | 0.536 | ||||||
 | AT2G47410 | nucleotide binding; nucleotide binding; FUNCTIONS IN- nucleotide binding; LOCATED IN- CUL4 RING [...] (1520 aa) | • | • | 0.525 | ||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1074 | |||
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 5e-60 | |
| pfam13925 | 164 | pfam13925, Katanin_con80, con80 domain of Katanin | 1e-58 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 7e-57 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 4e-43 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 2e-31 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 5e-26 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 2e-19 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 2e-10 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 4e-10 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 1e-08 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 1e-08 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 1e-08 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 3e-08 | |
| PTZ00420 | 568 | PTZ00420, PTZ00420, coronin; Provisional | 1e-07 | |
| PLN00181 | 793 | PLN00181, PLN00181, protein SPA1-RELATED; Provisio | 1e-06 | |
| PTZ00421 | 493 | PTZ00421, PTZ00421, coronin; Provisional | 1e-05 | |
| PLN00181 | 793 | PLN00181, PLN00181, protein SPA1-RELATED; Provisio | 2e-05 | |
| PLN00181 | 793 | PLN00181, PLN00181, protein SPA1-RELATED; Provisio | 1e-04 | |
| PTZ00421 | 493 | PTZ00421, PTZ00421, coronin; Provisional | 1e-04 | |
| PLN00181 | 793 | PLN00181, PLN00181, protein SPA1-RELATED; Provisio | 0.002 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 207 bits (528), Expect = 5e-60
Identities = 87/254 (34%), Positives = 134/254 (52%), Gaps = 2/254 (0%)
Query: 8 LQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFD 67
+ H+ V C++ + L TG D + +W + L +L G + PV VA
Sbjct: 2 RRTLKGHTGGVTCVAFSPDG-KLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAAS 60
Query: 68 SAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIW 127
+ + +G+S I+LWDLE + VRTLTGH S ++V F P G +S D +K+W
Sbjct: 61 ADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVW 120
Query: 128 DIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHI 187
D+ C+ T +GHT +N++ F+PDG +V S D +K+WDL GK + H G +
Sbjct: 121 DVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEV 180
Query: 188 RSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGFDD 247
S+ F P L + S+D T+K WDL T + +G+ R GV+++ F PDG L SG +D
Sbjct: 181 NSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSED 240
Query: 248 N-LKVYSWEPVICH 260
++V+ C
Sbjct: 241 GTIRVWDLRTGECV 254
|
Length = 289 |
| >gnl|CDD|222456 pfam13925, Katanin_con80, con80 domain of Katanin | Back alignment and domain information |
|---|
Score = 198 bits (505), Expect = 1e-58
Identities = 79/164 (48%), Positives = 106/164 (64%), Gaps = 3/164 (1%)
Query: 912 METHDIFISTLRSRLTKLQVVRHFWERNDIKGGINALRKLPDHSVQADVMSVLM--EKME 969
+ HD +S L SRLTKL+VVR W +NDIKG I A R++ D +V DV+SVL K E
Sbjct: 1 SKDHDTMLSVLSSRLTKLKVVRTLWRQNDIKGAIAAARRMNDLAVLVDVLSVLTQSLKKE 60
Query: 970 ILNLDLFLCLLPMLMGLLDSKMERHASISLEMLLKLVVVFGPMIHSTLSAPPA-VGVDLH 1028
+ LDL + LLP++ LL SK ERH + LE L ++ FGP+I S LSA P+ VGVDL
Sbjct: 61 SITLDLCVDLLPLVEELLQSKYERHILVGLETLRSILKKFGPVIRSALSAAPSSVGVDLS 120
Query: 1029 AEQRRECCNRCFMQLQKIQKILPILERRGGLLAKCAHELNLVLQ 1072
E+R + C +C QL+KI++I+ +L RR G + + A EL L L
Sbjct: 121 REERLQKCQKCKQQLKKIKQIVKLLARRKGSVGELARELQLELP 164
|
The con80 domain of katanin is the C-terminal region of the protein that binds to the N-terminal domain of katanin-p60, the catalytic ATPase. The complex associates with a specific subregion of the mitotic spindle leading to increased microtubule disassembly and targeting of p60 to the spindle poles. The assembly and function of the mitotic spindle requires the activity of a number of microtubule-binding proteins. Katanin, a heterodimeric microtubule-severing ATPase, is found localized at mitotic spindle poles. A proposed model is that katanin is targeted to spindle poles through a combination of direct microtubule binding by the p60 subunit and through interactions between the WD40 domain and an unknown protein. Length = 164 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 197 bits (504), Expect = 7e-57
Identities = 84/255 (32%), Positives = 135/255 (52%), Gaps = 8/255 (3%)
Query: 3 KRGYKLQEFVAHSANVNCISIGKKAC---RFLITGGDDQKVNLWAIGKPTALMSLCGLSS 59
+ G L+ H+ V ++ A +L +G D+ + LW + + +L G +S
Sbjct: 39 ETGELLRTLKGHTGPVRDVA----ASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTS 94
Query: 60 PVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGC 119
V SVAF ++ + + IK+WD+E K + TL GH +V F P G F AS
Sbjct: 95 YVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSS 154
Query: 120 MDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHD 179
D +K+WD+R C+ T GHT +N++ F+PDG ++S D +K+WDL+ GK L
Sbjct: 155 QDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGT 214
Query: 180 FKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGR 239
+ HE + S+ F P +LLA+GS D T++ WDL T E + + V ++ + PDG+
Sbjct: 215 LRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGK 274
Query: 240 TLFSG-FDDNLKVYS 253
L SG D ++++
Sbjct: 275 RLASGSADGTIRIWD 289
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 158 bits (402), Expect = 4e-43
Identities = 52/163 (31%), Positives = 88/163 (53%), Gaps = 1/163 (0%)
Query: 92 MVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFT 151
+ RTL GH T V F P G+ A+G D +K+WD+ + T KGHT + + +
Sbjct: 1 LRRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAAS 60
Query: 152 PDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFW 211
DG ++ SG D +++WDL G+ + H ++ S+ F P +L++ S D+T+K W
Sbjct: 61 ADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVW 120
Query: 212 DLETFELIGSTRPEVTGVHAITFHPDGRTLFSGFDDN-LKVYS 253
D+ET + + + R V+++ F PDG + S D +K++
Sbjct: 121 DVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWD 163
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 129 bits (324), Expect = 2e-31
Identities = 77/256 (30%), Positives = 124/256 (48%), Gaps = 10/256 (3%)
Query: 2 AKRGYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMS--LCGLSS 59
+ H ++ I+ L++G D + LW + L+ S
Sbjct: 52 SLPDLSSLLLRGHEDSITSIAFSPDG-ELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDS 110
Query: 60 PVDSVAF---DSAEVLVLAGASTGVIKLWDLE-ESKMVRTLTGHKSNCTAVEFHPFGEFF 115
V +A D +L+ + + G +KLWDL K++RTL GH + T++ F P G+
Sbjct: 111 SVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLL 170
Query: 116 ASG-CMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRW-VVSGGFDNVVKVWDLTA 173
ASG +D +K+WD+R + T GHT ++++ F+PDG + SG D +++WDL+
Sbjct: 171 ASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLST 230
Query: 174 GKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETF-ELIGSTRPEVTGVHAI 232
GKLL F P LLA+GS+D T++ WDL + L+ + + V ++
Sbjct: 231 GKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSV 290
Query: 233 TFHPDGRTLFSGFDDN 248
F PDG+ L SG D
Sbjct: 291 AFSPDGKLLASGSSDG 306
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 112 bits (281), Expect = 5e-26
Identities = 79/224 (35%), Positives = 118/224 (52%), Gaps = 17/224 (7%)
Query: 29 RFLITGGDDQKVNLWAI-GKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDL 87
L +G D + LW + + L +L G SS V SVAF L+ +G+S G ++LWDL
Sbjct: 254 SLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDL 313
Query: 88 EESK--MVRTLTGHKSNCTAVEFHPFGEFFASGCM-DTNLKIWDIRKKGCIHTYKGHTRG 144
E K TL GH+ +++ F P G SG D +++WD+R + T +GH+
Sbjct: 314 ETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSN- 372
Query: 145 INTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSA 204
+ ++ F+PDGR V SG D V++WDL+ G LL + H + S+DF P LA+GS+
Sbjct: 373 VLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSS 432
Query: 205 DRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGFDDN 248
D T++ WDL+T ++F PDG+ L S D
Sbjct: 433 DNTIRLWDLKTSLKS------------VSFSPDGKVLASKSSDL 464
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 92.5 bits (228), Expect = 2e-19
Identities = 65/204 (31%), Positives = 107/204 (52%), Gaps = 17/204 (8%)
Query: 8 LQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAI--GKPTALMSLCGLSSPVDSVA 65
L+ HS++V ++ + L +G D V LW + GK + ++L G PV S++
Sbjct: 277 LRTLSGHSSSVLSVAFSPDG-KLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLS 335
Query: 66 F-DSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNL 124
F +LV G+ G I+LWDL K ++TL GH SN +V F P G +SG D +
Sbjct: 336 FSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGH-SNVLSVSFSPDGRVVSSGSTDGTV 394
Query: 125 KIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHE 184
++WD+ + GHT + ++ F+PDG+ + SG DN +++WDL +
Sbjct: 395 RLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDL------------K 442
Query: 185 GHIRSIDFHPLEFLLATGSADRTV 208
++S+ F P +LA+ S+D +V
Sbjct: 443 TSLKSVSFSPDGKVLASKSSDLSV 466
|
Length = 466 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 56.2 bits (136), Expect = 2e-10
Identities = 15/37 (40%), Positives = 25/37 (67%)
Query: 134 CIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWD 170
+ T KGHT + ++ F+PDG+++ SG D +K+WD
Sbjct: 4 LLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 55.8 bits (135), Expect = 4e-10
Identities = 16/37 (43%), Positives = 23/37 (62%)
Query: 134 CIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWD 170
+ T KGHT + ++ F+PDG + SG D V+VWD
Sbjct: 3 LLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 1e-08
Identities = 18/39 (46%), Positives = 23/39 (58%)
Query: 174 GKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWD 212
G+LL K H G + S+ F P LA+GS D T+K WD
Sbjct: 2 GELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 1e-08
Identities = 17/38 (44%), Positives = 23/38 (60%)
Query: 91 KMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWD 128
K++RTL GH T+V F P G ASG D +++WD
Sbjct: 2 KLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 1e-08
Identities = 20/39 (51%), Positives = 24/39 (61%)
Query: 174 GKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWD 212
GKLL K H G + S+ F P LLA+GS D TV+ WD
Sbjct: 1 GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 3e-08
Identities = 16/38 (42%), Positives = 25/38 (65%)
Query: 91 KMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWD 128
++++TL GH T+V F P G++ ASG D +K+WD
Sbjct: 3 ELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|240412 PTZ00420, PTZ00420, coronin; Provisional | Back alignment and domain information |
|---|
Score = 55.3 bits (133), Expect = 1e-07
Identities = 39/129 (30%), Positives = 61/129 (47%), Gaps = 17/129 (13%)
Query: 55 CGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHP-FGE 113
CG++ S F + V G G I+L + V L GH S+ ++F+P F E
Sbjct: 32 CGIAC---SSGFVAVPWEVEGGGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSE 88
Query: 114 FFASGCMDTNLKIWDIRKKG----------CIHTYKGHTRGINTIRFTPDGRWVV-SGGF 162
ASG D +++W+I CI KGH + I+ I + P +++ S GF
Sbjct: 89 ILASGSEDLTIRVWEIPHNDESVKEIKDPQCI--LKGHKKKISIIDWNPMNYYIMCSSGF 146
Query: 163 DNVVKVWDL 171
D+ V +WD+
Sbjct: 147 DSFVNIWDI 155
|
Length = 568 |
| >gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Score = 52.4 bits (125), Expect = 1e-06
Identities = 47/161 (29%), Positives = 80/161 (49%), Gaps = 12/161 (7%)
Query: 105 AVEFHPFGEFFASGCMDTNLKIWD----IRKKGCIH----TYKGHTRGINTIRFTPDGRW 156
A+ F GEFFA+ ++ +KI++ I+ IH ++ +
Sbjct: 488 AIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQ 547
Query: 157 VVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLE-FLLATGSADRTVKFWDLET 215
V S F+ VV+VWD+ +L+ + K HE + SID+ + LLA+GS D +VK W +
Sbjct: 548 VASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQ 607
Query: 216 FELIGSTRPEVTGVHAITFHPD-GRTLFSGFDDNLKVYSWE 255
IG+ + + + + F + GR+L G D+ KVY ++
Sbjct: 608 GVSIGTIKTKAN-ICCVQFPSESGRSLAFGSADH-KVYYYD 646
|
Length = 793 |
| >gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional | Back alignment and domain information |
|---|
Score = 49.1 bits (117), Expect = 1e-05
Identities = 40/128 (31%), Positives = 58/128 (45%), Gaps = 13/128 (10%)
Query: 96 LTGHKSNCTAVEFHPFGE---FFASGCMDTNLKIWDIRKKGC-------IHTYKGHTRGI 145
L G + V F+PF F AS D + W I ++G I +GHT+ +
Sbjct: 71 LLGQEGPIIDVAFNPFDPQKLFTAS--EDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKV 128
Query: 146 NTIRFTPDGRWVV-SGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSA 204
+ F P V+ S G D VV VWD+ GK + K H I S++++ LL T S
Sbjct: 129 GIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSK 188
Query: 205 DRTVKFWD 212
D+ + D
Sbjct: 189 DKKLNIID 196
|
Length = 493 |
| >gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Score = 48.5 bits (115), Expect = 2e-05
Identities = 48/181 (26%), Positives = 82/181 (45%), Gaps = 11/181 (6%)
Query: 37 DQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLA-GASTGVIKLWDLEESKMVRT 95
+ V +W + + + + V S+ + SA+ +LA G+ G +KLW + + + T
Sbjct: 554 EGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGT 613
Query: 96 LTGHKSNCTAVEF-HPFGEFFASGCMDTNLKIWDIRK-KGCIHTYKGHTRGINTIRFTPD 153
+ K+N V+F G A G D + +D+R K + T GH++ ++ +RF D
Sbjct: 614 IKT-KANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-D 671
Query: 154 GRWVVSGGFDNVVKVWDLTAG------KLLHDFKFHEGHIRSIDFHPLEFLLATGSADRT 207
+VS DN +K+WDL+ LH F H + + +ATGS
Sbjct: 672 SSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNE 731
Query: 208 V 208
V
Sbjct: 732 V 732
|
Length = 793 |
| >gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Score = 45.8 bits (108), Expect = 1e-04
Identities = 49/195 (25%), Positives = 86/195 (44%), Gaps = 26/195 (13%)
Query: 28 CRFLITGGDDQKVNLWAIGKPTALMSLCG---LSSPVDSVAFDSAEVLVLAGASTGVIKL 84
C +I G D + + + L +C + S V S F+ GV+++
Sbjct: 512 CESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFE------------GVVQV 559
Query: 85 WDLEESKMVRTLTGHKSNCTAVEFHPFG-EFFASGCMDTNLKIWDIRKKGCIHTYKGHTR 143
WD+ S++V + H+ ++++ ASG D ++K+W I + I T K
Sbjct: 560 WDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKA- 618
Query: 144 GINTIRFTPD-GRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFL---- 198
I ++F + GR + G D+ V +DL KL GH +++ + + F+
Sbjct: 619 NICCVQFPSESGRSLAFGSADHKVYYYDLRNPKL--PLCTMIGHSKTVSY--VRFVDSST 674
Query: 199 LATGSADRTVKFWDL 213
L + S D T+K WDL
Sbjct: 675 LVSSSTDNTLKLWDL 689
|
Length = 793 |
| >gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional | Back alignment and domain information |
|---|
Score = 45.3 bits (107), Expect = 1e-04
Identities = 35/141 (24%), Positives = 56/141 (39%), Gaps = 9/141 (6%)
Query: 54 LCGLSSPVDSVAFDSAEVLVLAGAST-GVIKLWDLEE-------SKMVRTLTGHKSNCTA 105
L G P+ VAF+ + L AS G I W + E S + L GH
Sbjct: 71 LLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGI 130
Query: 106 VEFHPFGE-FFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDN 164
V FHP AS D + +WD+ + + K H+ I ++ + DG + + D
Sbjct: 131 VSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDK 190
Query: 165 VVKVWDLTAGKLLHDFKFHEG 185
+ + D G ++ + H
Sbjct: 191 KLNIIDPRDGTIVSSVEAHAS 211
|
Length = 493 |
| >gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Score = 41.6 bits (97), Expect = 0.002
Identities = 45/182 (24%), Positives = 72/182 (39%), Gaps = 26/182 (14%)
Query: 4 RGYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLW------AIGKPTALMSLCGL 57
R + E H V I L +G DD V LW +IG ++C +
Sbjct: 564 RSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCV 623
Query: 58 SSPVD---SVAFDSAEVLVLAGASTGVIKLWDLEESKM-VRTLTGHKSNCTAVEFHPFGE 113
P + S+AF SA+ V +DL K+ + T+ GH + V F
Sbjct: 624 QFPSESGRSLAFGSADHKVY---------YYDLRNPKLPLCTMIGHSKTVSYVRFVDSST 674
Query: 114 FFASGCMDTNLKIWDIR------KKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVK 167
+S D LK+WD+ + +H++ GHT N + + ++ +G N V
Sbjct: 675 LVSSS-TDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVF 733
Query: 168 VW 169
V+
Sbjct: 734 VY 735
|
Length = 793 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1074 | |||
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 100.0 | |
| PF13925 | 164 | Katanin_con80: con80 domain of Katanin | 100.0 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 100.0 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 100.0 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 100.0 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 100.0 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 100.0 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.98 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 99.98 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 99.98 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 99.98 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.98 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 99.98 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 99.97 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 99.97 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 99.97 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 99.97 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 99.97 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 99.97 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 99.97 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 99.97 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 99.97 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 99.97 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 99.97 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 99.97 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.97 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 99.96 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 99.96 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 99.96 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 99.96 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 99.96 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 99.96 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 99.96 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 99.96 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 99.95 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 99.95 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 99.95 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 99.95 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 99.95 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.95 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.95 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 99.95 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 99.95 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 99.95 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 99.95 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 99.95 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 99.94 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 99.94 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 99.94 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 99.94 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 99.94 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 99.94 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.94 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.94 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 99.94 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 99.94 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.94 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.94 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.93 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.93 | |
| PTZ00421 | 493 | coronin; Provisional | 99.93 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.93 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.93 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.93 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.93 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.93 | |
| PTZ00421 | 493 | coronin; Provisional | 99.93 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.93 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 99.93 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.93 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.93 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.92 | |
| PTZ00420 | 568 | coronin; Provisional | 99.92 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.92 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.92 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.92 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.92 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.92 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.92 | |
| PTZ00420 | 568 | coronin; Provisional | 99.92 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.91 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.91 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.91 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.91 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.91 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.91 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.91 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.9 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.9 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.9 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.9 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.9 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.9 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.9 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.9 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.89 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.89 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.89 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.89 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.89 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.89 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.89 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.88 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 99.88 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.88 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.88 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.88 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.88 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.88 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.88 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.87 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.87 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.86 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.86 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.86 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 99.86 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.86 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 99.86 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.85 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.85 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.85 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.85 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.85 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.85 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.85 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 99.85 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.84 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.84 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.83 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.83 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.83 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.83 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.83 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.82 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.82 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.82 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.81 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.81 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.81 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.81 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.81 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.8 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.8 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.8 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.8 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.78 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.78 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.78 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.77 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.77 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 99.77 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.77 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.76 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.76 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.75 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.74 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.74 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.74 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.74 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.73 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.73 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.73 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.73 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.72 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.72 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.7 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.69 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.69 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.69 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.69 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.69 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.68 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.68 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.67 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.67 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.66 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.66 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.65 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.65 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.63 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.63 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.63 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.63 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.62 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.62 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.61 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.6 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.6 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.6 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.6 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.58 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.58 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.58 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.58 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.58 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.58 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 99.58 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.58 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.57 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.56 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.55 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.55 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.53 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.53 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.53 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.53 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.52 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.51 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.51 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.5 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.5 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.5 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.49 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.49 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 99.49 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.48 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.48 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.47 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.47 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.46 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.45 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.45 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.45 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.43 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.43 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.42 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.39 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.38 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.38 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.37 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.37 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.36 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.35 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 99.35 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.35 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.35 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.34 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.34 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.33 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.32 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.32 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.31 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 99.3 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.3 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.3 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 99.3 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 99.28 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 99.27 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 99.26 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 99.25 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 99.23 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 99.23 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 99.22 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 99.18 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 99.16 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 99.16 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 99.15 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 99.15 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 99.15 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 99.12 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 99.1 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 99.1 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 99.09 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 99.07 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.06 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 99.02 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 99.01 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 99.0 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 98.97 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 98.97 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 98.97 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 98.96 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 98.95 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 98.94 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 98.93 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 98.93 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 98.93 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 98.93 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 98.92 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 98.9 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 98.89 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 98.88 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 98.88 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 98.87 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 98.85 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 98.84 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 98.8 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 98.79 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 98.75 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 98.72 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 98.69 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 98.66 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 98.64 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 98.64 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 98.6 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 98.58 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 98.56 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 98.54 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 98.53 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 98.49 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 98.46 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 98.45 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 98.44 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 98.43 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 98.43 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 98.43 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 98.41 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 98.4 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 98.38 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 98.36 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 98.33 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 98.33 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 98.32 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.29 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 98.28 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 98.28 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 98.27 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 98.25 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 98.24 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 98.23 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 98.23 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 98.2 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 98.2 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 98.2 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 98.18 | |
| PF08149 | 80 | BING4CT: BING4CT (NUC141) domain; InterPro: IPR012 | 98.17 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 98.16 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 98.12 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 98.09 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.08 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 98.08 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.05 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 98.05 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 98.04 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 98.04 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 98.01 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 98.0 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 97.98 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 97.98 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 97.94 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 97.93 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 97.92 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 97.89 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 97.85 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 97.83 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 97.78 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 97.78 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 97.74 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 97.74 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 97.74 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 97.74 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 97.74 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 97.72 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 97.71 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 97.68 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 97.65 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 97.59 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 97.59 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 97.58 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 97.55 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 97.38 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 97.34 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 97.33 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 97.16 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 97.14 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 97.08 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 97.07 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 97.02 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 97.02 | |
| KOG1897 | 1096 | consensus Damage-specific DNA binding complex, sub | 97.01 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 97.0 | |
| PRK10115 | 686 | protease 2; Provisional | 96.98 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 96.91 | |
| PRK10115 | 686 | protease 2; Provisional | 96.91 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 96.83 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 96.81 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 96.77 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 96.76 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 96.73 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 96.71 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 96.7 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 96.69 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 96.67 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 96.61 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 96.59 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 96.59 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 96.52 | |
| COG1520 | 370 | FOG: WD40-like repeat [Function unknown] | 96.42 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 96.28 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 96.28 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 96.24 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 96.22 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 96.2 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 96.17 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 96.13 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 96.12 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 96.1 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 96.06 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 96.02 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 95.96 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 95.84 | |
| COG5276 | 370 | Uncharacterized conserved protein [Function unknow | 95.83 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 95.77 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 95.75 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 95.73 | |
| COG3292 | 671 | Predicted periplasmic ligand-binding sensor domain | 95.73 | |
| PF14727 | 418 | PHTB1_N: PTHB1 N-terminus | 95.71 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 95.67 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 95.57 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 95.5 | |
| PLN00033 | 398 | photosystem II stability/assembly factor; Provisio | 95.3 | |
| KOG3630 | 1405 | consensus Nuclear pore complex, Nup214/CAN compone | 95.27 | |
| COG1520 | 370 | FOG: WD40-like repeat [Function unknown] | 95.26 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 95.26 | |
| KOG1897 | 1096 | consensus Damage-specific DNA binding complex, sub | 95.24 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 95.13 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 94.9 | |
| PF05935 | 477 | Arylsulfotrans: Arylsulfotransferase (ASST); Inter | 94.89 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 94.83 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 94.66 | |
| PF10433 | 504 | MMS1_N: Mono-functional DNA-alkylating methyl meth | 94.51 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 94.19 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 94.18 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 94.14 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 94.07 | |
| TIGR03118 | 336 | PEPCTERM_chp_1 conserved hypothetical protein TIGR | 94.07 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 94.01 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 93.8 | |
| KOG3630 | 1405 | consensus Nuclear pore complex, Nup214/CAN compone | 93.76 | |
| PLN00033 | 398 | photosystem II stability/assembly factor; Provisio | 93.51 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 93.37 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 93.33 | |
| smart00036 | 302 | CNH Domain found in NIK1-like kinases, mouse citro | 93.26 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 93.17 | |
| PLN02153 | 341 | epithiospecifier protein | 92.91 | |
| KOG2247 | 615 | consensus WD40 repeat-containing protein [General | 92.89 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 92.89 | |
| COG4257 | 353 | Vgb Streptogramin lyase [Defense mechanisms] | 92.46 | |
| PF14727 | 418 | PHTB1_N: PTHB1 N-terminus | 92.28 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 92.26 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 92.23 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 91.98 | |
| TIGR03547 | 346 | muta_rot_YjhT mutatrotase, YjhT family. Members of | 91.88 | |
| smart00036 | 302 | CNH Domain found in NIK1-like kinases, mouse citro | 91.68 | |
| TIGR03548 | 323 | mutarot_permut cyclically-permuted mutatrotase fam | 91.35 | |
| PF05935 | 477 | Arylsulfotrans: Arylsulfotransferase (ASST); Inter | 91.25 | |
| TIGR03547 | 346 | muta_rot_YjhT mutatrotase, YjhT family. Members of | 91.15 | |
| PLN02153 | 341 | epithiospecifier protein | 91.01 | |
| COG4590 | 733 | ABC-type uncharacterized transport system, permeas | 90.99 | |
| PF03022 | 287 | MRJP: Major royal jelly protein; InterPro: IPR0035 | 90.91 | |
| COG3823 | 262 | Glutamine cyclotransferase [Posttranslational modi | 90.31 | |
| PRK14131 | 376 | N-acetylneuraminic acid mutarotase; Provisional | 90.21 | |
| TIGR03548 | 323 | mutarot_permut cyclically-permuted mutatrotase fam | 90.19 | |
| PRK14131 | 376 | N-acetylneuraminic acid mutarotase; Provisional | 90.09 | |
| COG5167 | 776 | VID27 Protein involved in vacuole import and degra | 90.05 | |
| PLN02193 | 470 | nitrile-specifier protein | 89.91 | |
| COG5276 | 370 | Uncharacterized conserved protein [Function unknow | 89.8 | |
| PF10395 | 670 | Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an | 89.71 | |
| COG1506 | 620 | DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-pept | 89.41 | |
| COG5167 | 776 | VID27 Protein involved in vacuole import and degra | 89.39 | |
| KOG1983 | 993 | consensus Tomosyn and related SNARE-interacting pr | 89.24 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 89.23 | |
| PF14781 | 136 | BBS2_N: Ciliary BBSome complex subunit 2, N-termin | 88.93 | |
| PF13449 | 326 | Phytase-like: Esterase-like activity of phytase | 88.45 | |
| COG4257 | 353 | Vgb Streptogramin lyase [Defense mechanisms] | 88.25 | |
| PF13449 | 326 | Phytase-like: Esterase-like activity of phytase | 87.99 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 87.98 | |
| COG5290 | 1243 | IkappaB kinase complex, IKAP component [Transcript | 87.88 | |
| PF14761 | 215 | HPS3_N: Hermansky-Pudlak syndrome 3 | 87.76 | |
| PLN02193 | 470 | nitrile-specifier protein | 86.38 | |
| PF14761 | 215 | HPS3_N: Hermansky-Pudlak syndrome 3 | 85.95 | |
| PF08801 | 422 | Nucleoporin_N: Nup133 N terminal like; InterPro: I | 85.79 | |
| KOG2063 | 877 | consensus Vacuolar assembly/sorting proteins VPS39 | 84.78 | |
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 84.78 | |
| COG5290 | 1243 | IkappaB kinase complex, IKAP component [Transcript | 84.44 | |
| PF03022 | 287 | MRJP: Major royal jelly protein; InterPro: IPR0035 | 84.43 | |
| PF07250 | 243 | Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP | 84.06 | |
| PF10395 | 670 | Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an | 83.98 | |
| COG3823 | 262 | Glutamine cyclotransferase [Posttranslational modi | 83.81 | |
| KOG1983 | 993 | consensus Tomosyn and related SNARE-interacting pr | 83.51 | |
| KOG2247 | 615 | consensus WD40 repeat-containing protein [General | 83.04 | |
| PF07569 | 219 | Hira: TUP1-like enhancer of split; InterPro: IPR01 | 82.26 | |
| PF07250 | 243 | Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP | 82.24 | |
| PRK05560 | 805 | DNA gyrase subunit A; Validated | 81.62 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 81.38 | |
| PF14781 | 136 | BBS2_N: Ciliary BBSome complex subunit 2, N-termin | 81.06 | |
| KOG1900 | 1311 | consensus Nuclear pore complex, Nup155 component ( | 80.59 | |
| KOG1896 | 1366 | consensus mRNA cleavage and polyadenylation factor | 80.12 |
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-87 Score=767.82 Aligned_cols=773 Identities=42% Similarity=0.640 Sum_probs=570.9
Q ss_pred EEEecCCCCEEEEEEecCCCcEEEEEECCCeEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcC
Q 001462 9 QEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLE 88 (1074)
Q Consensus 9 ~~L~gHs~~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~k~l~sl~~hs~~ItsLafSpdg~~LatGs~DG~I~VWDl~ 88 (1074)
+++.+|...|.|+..-..+ +.+++|+.|..+.||.+.....+..+.+|..+|.++.|+....+|++|+.+|+|++||++
T Consensus 22 ~~~~~hsaav~~lk~~~s~-r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDle 100 (825)
T KOG0267|consen 22 REFVAHSAAVGCLKIRKSS-RSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLE 100 (825)
T ss_pred hhhhhhhhhhceeeeeccc-eeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehh
Confidence 5678899999999985544 899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeeEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEE
Q 001462 89 ESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKV 168 (1074)
Q Consensus 89 tgk~i~tl~~h~~~VtsLafSPdg~~LaSgS~DGsI~IWDi~tg~~v~~l~~h~~~VtsLafSPdG~~LaSgs~DGsI~V 168 (1074)
.++.++++.+|...+..+.|+|.+.|++.|+.|+.+++||++...|.+.+.+|...+.++.|+|+|+|++.|++|..++|
T Consensus 101 eAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki 180 (825)
T KOG0267|consen 101 EAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKI 180 (825)
T ss_pred hhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcceeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EECCCCceEEEeeecCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCCcEEEeeCCCCCCeEEEEEecCCCEEEEEECCc
Q 001462 169 WDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGFDDN 248 (1074)
Q Consensus 169 WDl~tgk~v~~~~~h~g~ItsLafSPdg~lLaTGS~DGtI~IWDl~tg~~i~t~~~~~~~ItsIafSPDG~~LasGsd~~ 248 (1074)
||+..|+...+|+.|.+.+..+.|+|...+++.|+.|+++++||+++++.+........+|.+..|+++|..+++|....
T Consensus 181 ~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 181 WDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVLSGEQIS 260 (825)
T ss_pred ecccccccccccccccccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCccCCceeeeecCCceeeecCchhh
Confidence 99999999999999999999999999999999999999999999999999999998899999999999999999886655
Q ss_pred EEEEEecCCeeeeccccCCceeeEEEecCCCEEEEEECCCeEEEEEcCCCceeeeecCCCCCCCCceeEEEEcCCCCcce
Q 001462 249 LKVYSWEPVICHDSVDMGWSTLGDLCINDGKLLGCSFYRNSVGIWVADVSHVEPYGVGAPEPDQSICTEVKFNPPGSHSL 328 (1074)
Q Consensus 249 I~Vwd~~s~~~~~~l~~~~s~~~~l~spDGklLAsgs~DGsV~IWDld~~~l~~~~~~~~~~~~~~ItsVaFSPDGs~~L 328 (1074)
+..-.. +.+.....+.=|.-.. ...+....|++ ..
T Consensus 261 l~~~~~---------------------------a~ah~~~~~~~~Ep~~--------------~~~~vqs~~~~-ek--- 295 (825)
T KOG0267|consen 261 LSESRT---------------------------ASAHVRKTLARWEPEM--------------DGAVVQSNSHK-EK--- 295 (825)
T ss_pred hhhhhc---------------------------ccceeecccccccccc--------------ccceeeecCCc-cc---
Confidence 433000 0000001111111000 00000001111 00
Q ss_pred eEEEEEeccCcceEEeecCCcccceEEEeecCCCCccceeeecCCCCCCCCCCCCChhhhhhhhcccCCCCCCCCCcccc
Q 001462 329 EKVGIIGRSTSGFRSTSPDYETKDIKTIYVDSTGGKPVASQKIGPLNSPKVVPPLDSEEISDLQTEKQNPAIGVPELSNG 408 (1074)
Q Consensus 329 v~vlavG~stG~~r~ivpD~et~eI~~i~iDs~gGepv~~~~~sP~~s~k~~~~~~~~~l~~~~s~~~s~~~~~~~~~~~ 408 (1074)
.++++...-.+..+.-+ .. .++..+. .+.|.. +
T Consensus 296 --~v~v~~d~~~ln~~~s~-----~~-------~~kl~~~-~~~p~l----------~---------------------- 328 (825)
T KOG0267|consen 296 --VVAVGRDPQDLNAFSSK-----VN-------LSKLEDS-TYVPLL----------K---------------------- 328 (825)
T ss_pred --ccccccCcccccccccc-----cc-------ccccccc-ccccee----------c----------------------
Confidence 00000000000000000 00 0000000 000100 0
Q ss_pred ccccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCcchhhccccccccccccCCCCCCCcc-
Q 001462 409 QALDKSFIVPSIVPQESPAGKDSSFSAGESITFSRTKPGMLLRPAHVQKPSNSKYDAERLSTAAESESLNSKKSDLDSA- 487 (1074)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 487 (1074)
++..-++..+ | -+.. .-+.++.+| |-| |..++..+ .+. +-+++....++
T Consensus 329 --------------~t~~l~rl~~-S-~q~d----ep~~~~~k~-~~~--s~t~~~s~--~~~-----~~s~P~~r~~s~ 378 (825)
T KOG0267|consen 329 --------------ETKSLGRLSV-S-YQTD----EPLDKSTKP-HRR--SSTSQNSD--RSE-----VESKPLTRESSN 378 (825)
T ss_pred --------------cccchhcccc-c-cccC----CCcccCCCC-ccc--cccccccc--ccc-----cccCccccccCC
Confidence 0011111111 0 0000 001111122 111 11111110 011 11222222111
Q ss_pred cCCCcccccccCCCcccccccccccccccccccccccCCCCCCCCcCCCCCCCCCCCCCceeeeeceeeecCCccchhhh
Q 001462 488 VDPNVKTRFVSSDGARKSCEEKDCHIKTITGEIENIFSPQKPPKQEDGDKSRDCSKITNSVKFVNGVAVVPGRTRSLVER 567 (1074)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 567 (1074)
..|... ......+|++ +..+++....+.+++|+|-|| ..+++|++.++
T Consensus 379 ~~~di~-----~~s~~lss~e-------------------------~~~~~P~r~s~tn~~k~~sgv--Ss~~~rs~ts~ 426 (825)
T KOG0267|consen 379 LSPDIP-----KESRTLSSTE-------------------------SNSEYPHRVSPTNPVKIVSGV--SSSVTRSPTSP 426 (825)
T ss_pred CCcccc-----cccccccccc-------------------------cCCCCCCcccccCcccccccc--ccccccCCCCC
Confidence 111111 1112222222 445788899999999999998 89999999999
Q ss_pred hhhhccccccccccccccccccccccccccccCCCccccCCCcccccccccccccCCccccccccccccccccCCCCCCC
Q 001462 568 FERREKVNSNEDLAANVIPQTRLSRNEDQAADVTPQTTLSSNEDHVANVTSQTRLNGNEYQAATAPQQTRLSSNIDPVAN 647 (1074)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 647 (1074)
+++.++..+-+- +... ++-+|+ ++ + ..+|....+|+++....+.+ +.| +.
T Consensus 427 ~~~~k~n~ka~~-~~~e-------------~~~~~v--------~~-~-~~p~~~q~~Esp~~~~~~ar-----ttP-~s 476 (825)
T KOG0267|consen 427 VNPGKANPKAEI-ASVE-------------QDNNPV--------IQ-D-PLPTIEQATESPVPSTRIAR-----TTP-AS 476 (825)
T ss_pred CCccccCccccc-cccc-------------cccccc--------cC-C-CcccccccccCccccccccc-----cCC-cc
Confidence 999886644321 1011 111111 00 1 23455666788886665444 347 99
Q ss_pred cCCccCCCCCccccccCCCCC--CCCCCcccccccccccCCCCCcccceecCcccccCCCccccccCCCCCCCCCCcccc
Q 001462 648 VTPQTLPSGNEDQAANVTPQT--RPSSNEDQTANVIRQTRPSSNEDQAVIVNPQTRRHSNEDQASNIAPYTRHDRNEDRA 725 (1074)
Q Consensus 648 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 725 (1074)
++|..|++ .+++.++++|.+ +|+ |+|+.++||+++|+.-- -+-++++. .+
T Consensus 477 ~~P~~~~~-r~~~rs~~~~~~st~~~-------------rtssspvmpv~lp~~s~-------------~ty~~~~v-~a 528 (825)
T KOG0267|consen 477 VQPIALNS-RSNSRSDPPPPTSTVPE-------------RTSSSPVMPVILPQASM-------------STYPEPPV-GA 528 (825)
T ss_pred cccccccc-cccCCCCCCCccccccc-------------ccccCCccccccCCCcc-------------cccCCCCc-cc
Confidence 99999999 488888888775 555 45667799999954321 11111111 11
Q ss_pred cccCCccccccccccccccccccCCCCccccccCCCCcccCCCcccccCCCCCceeecccccccCCCccccccccccccc
Q 001462 726 TNITPQSKISRNQDQATNITSHMGLNSNENRATNIPSRSRLNSREDQSTNTPSQTIVNGAENKATKTPTQMRLKSSENQV 805 (1074)
Q Consensus 726 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 (1074)
+. .++++.++++ ++..||.
T Consensus 529 ~~------------------------------------------------------------~a~~s~~r~~-~~~~~~a 547 (825)
T KOG0267|consen 529 SS------------------------------------------------------------TARTSSARIL-PVTFNQA 547 (825)
T ss_pred cC------------------------------------------------------------cccccccccc-ccccccc
Confidence 10 1111111111 2233333
Q ss_pred cCCC--------cccccCcccccccccccccccccccccccccccccccccCccccccccceeecccCCcccc--ccccC
Q 001462 806 TSTP--------PRARLNSSIEGQATNIPIRRRFNRNVDQTTNVTRHRRSISNTDQATSTTAHVAVKNNDDIA--TVITP 875 (1074)
Q Consensus 806 ~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 875 (1074)
.|++ .++|+|+++++.+++++++.++..+++++.+ |||+++ +++.|||++.|++.+|..+++ ++.+|
T Consensus 548 ~~~~~~~~~~~l~r~r~~~pa~~~~tk~~~~~~~t~~~s~ias--r~r~s~-t~~~~tPa~~~~~~~mt~~et~~t~~~~ 624 (825)
T KOG0267|consen 548 NNISSEEAPVTLRRQRRNSPARVMPTKLNQSVNMTSDTSHIAS--RHRVSP-TQMLATPAVIDQVGDMTADETRPTNMQP 624 (825)
T ss_pred ccccCcCCccccccccCCCcccccccccchhhcccccccchhh--hhccCc-cccccccceecccccccccccccccccc
Confidence 3332 2378889999999999999999999999999 999998 999999999999999977777 99999
Q ss_pred ccccccccccCCCCCCCcccCCCCCCCCchhHHHHHHhhhHHHHHHHhhccchhhHHHhhhhccchhHHHHHHHcCCCce
Q 001462 876 HVTALSYERTSTPKGEPQISGRDTPVANEGEAVESLMETHDIFISTLRSRLTKLQVVRHFWERNDIKGGINALRKLPDHS 955 (1074)
Q Consensus 876 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~h~~~~~~l~sR~~~l~~~~~~w~~~~i~~ai~~~~~~~d~s 955 (1074)
..+++ .+ ++|+|+++ |+||+++||.+|++||+.|++||+|||+|||||+++|||++|.++.||.|++
T Consensus 625 q~~n~------~~-ee~~~s~~------eedI~e~im~~Hde~lstlqSRl~kLqiVR~~Wer~DiK~sI~s~~kl~D~s 691 (825)
T KOG0267|consen 625 QRDNL------VQ-EEPIISDR------EEDIVEDIMGTHNEFLSTLQSRLTKLQIVRHFWERSDIKGSIGSLRKLADNS 691 (825)
T ss_pred ccccc------cc-cccccCcc------hhhhhhhhhhcchHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhhh
Confidence 99888 77 88888875 5679999999999999999999999999999999999999999999999999
Q ss_pred eehhHHHHHhhhchhhhHhHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHhhhhhhhcCCCCCccccchhhHHhhH
Q 001462 956 VQADVMSVLMEKMEILNLDLFLCLLPMLMGLLDSKMERHASISLEMLLKLVVVFGPMIHSTLSAPPAVGVDLHAEQRREC 1035 (1074)
Q Consensus 956 v~~dv~~~l~~~~~~~~L~~c~~~lp~~~~ll~s~~e~~~~~~l~~l~~~~~~f~~~i~~~~~~~~~vgvd~~ae~R~~~ 1035 (1074)
|+||||+||++|++||+||+|+.|||+|++||.|++|+|+.|+|+||++||+.||++|+++++||..|||||+||||.++
T Consensus 692 V~ADvL~Iltek~eiLtLDl~t~l~P~lt~LLgS~~e~~v~vsld~Llklv~~fgt~I~stlsAp~~VGVDi~aeer~~~ 771 (825)
T KOG0267|consen 692 VQADVLNILTEKIEILTLDLCTQLLPVLTALLGSKTERPVNVSLDMLLKLVAVFGTVIYSTLSAPRSVGVDIHAEERKER 771 (825)
T ss_pred HHHHHHHHHhhhhhHhhHHHHHHHHHHHHHHhcccchhhhhhHHHHHHHHHHHhhhhhhhhhhCCcccccccchHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhHHHHhcCcchhhhHHHhhhh
Q 001462 1036 CNRCFMQLQKIQKILPILERRGGLLAKCAHELNLVL 1071 (1074)
Q Consensus 1036 ~~~c~~~l~~i~~~~~~l~~~~g~~~~~~~el~~~l 1071 (1074)
|..||.+|.||.-.++.+.+..|-..+..++|+.+.
T Consensus 772 ~~lc~~~l~kl~~~~~s~s~~s~s~~~~~~s~~~~~ 807 (825)
T KOG0267|consen 772 YSLCFVELPKLFCGLASLSKNSSSFIKKRRSLNKKG 807 (825)
T ss_pred hhhhhhhcchhhccccccccccccchhhhhhhcccc
Confidence 999999999999999999999999999999998764
|
|
| >PF13925 Katanin_con80: con80 domain of Katanin | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-43 Score=361.97 Aligned_cols=161 Identities=53% Similarity=0.779 Sum_probs=158.7
Q ss_pred HhhhHHHHHHHhhccchhhHHHhhhhccchhHHHHHHHcCCCceeehhHHHHHh--hhchhhhHhHHHHHHHHHHhhhcc
Q 001462 912 METHDIFISTLRSRLTKLQVVRHFWERNDIKGGINALRKLPDHSVQADVMSVLM--EKMEILNLDLFLCLLPMLMGLLDS 989 (1074)
Q Consensus 912 ~~~h~~~~~~l~sR~~~l~~~~~~w~~~~i~~ai~~~~~~~d~sv~~dv~~~l~--~~~~~~~L~~c~~~lp~~~~ll~s 989 (1074)
|++|++|+++|++|+++|++||+||.++|+|+||+++.+++|+||++|+|++|+ .+.+.||||+|+.|||+|+.||+|
T Consensus 1 ~~~H~~~~~vL~~R~~~L~~v~~~W~~~~~k~ai~~~~~~~D~svlvD~L~vl~~~~~~~~~tLd~c~~lLP~i~~LL~S 80 (164)
T PF13925_consen 1 SKGHDTMISVLQSRLTNLQVVRTFWRRNDIKGAIEYAVRMNDPSVLVDVLSVLNQSLKPEKWTLDLCVDLLPLIEELLQS 80 (164)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhcCCchHHHHHHHHHHHhcCcCcccHHHHHHHHHHHHHHHhC
Confidence 689999999999999999999999999999999999999999999999999999 999999999999999999999999
Q ss_pred ccchhHHHHHHHHHHHHHHHhhhhhhhcCCC-CCccccchhhHHhhHHHHHHHHHHHHHHHhhHHHHhcCcchhhhHHHh
Q 001462 990 KMERHASISLEMLLKLVVVFGPMIHSTLSAP-PAVGVDLHAEQRRECCNRCFMQLQKIQKILPILERRGGLLAKCAHELN 1068 (1074)
Q Consensus 990 ~~e~~~~~~l~~l~~~~~~f~~~i~~~~~~~-~~vgvd~~ae~R~~~~~~c~~~l~~i~~~~~~l~~~~g~~~~~~~el~ 1068 (1074)
|||+|+.+||++|++|++.||++|+++++++ +.+||||.+|||++||+.||++|++|++.+..|++++|.+|+.|+||+
T Consensus 81 k~E~~i~~aL~~L~~i~~~f~~~I~~~~~~~~~~~gVDl~~EeR~~kc~~c~~~L~~i~~~l~~l~~~~g~~g~~a~el~ 160 (164)
T PF13925_consen 81 KYESYISVALEMLRSILKKFGPVIRSNLSAPSPSIGVDLSAEERMEKCQECYQQLRKIVQILKSLARRSGEVGSLARELN 160 (164)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 9999999999999999999999999999964 699999999999999999999999999999999999999999999999
Q ss_pred hhhc
Q 001462 1069 LVLQ 1072 (1074)
Q Consensus 1069 ~~lq 1072 (1074)
+.||
T Consensus 161 ~~l~ 164 (164)
T PF13925_consen 161 LELQ 164 (164)
T ss_pred HhcC
Confidence 9998
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-40 Score=361.30 Aligned_cols=314 Identities=25% Similarity=0.396 Sum_probs=284.2
Q ss_pred eEEEEecCCCCEEEEEEecCCCcEEEEEECCCeEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEE
Q 001462 7 KLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWD 86 (1074)
Q Consensus 7 ~v~~L~gHs~~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~k~l~sl~~hs~~ItsLafSpdg~~LatGs~DG~I~VWD 86 (1074)
+-..+.||.++|.|++|+|+| ..|++|+.|.++++||+.+..+.++.++|..-|.|++|+|||+.|++|+.||.|.+||
T Consensus 107 CssS~~GH~e~Vl~~~fsp~g-~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwd 185 (480)
T KOG0271|consen 107 CSSSIAGHGEAVLSVQFSPTG-SRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWD 185 (480)
T ss_pred eccccCCCCCcEEEEEecCCC-ceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEec
Confidence 345688999999999999998 8899999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCee-EEEEeCCCCCeEEEEEcC-----CCCEEEEEECCCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEE
Q 001462 87 LEESKM-VRTLTGHKSNCTAVEFHP-----FGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSG 160 (1074)
Q Consensus 87 l~tgk~-i~tl~~h~~~VtsLafSP-----dg~~LaSgS~DGsI~IWDi~tg~~v~~l~~h~~~VtsLafSPdG~~LaSg 160 (1074)
..+|+. ...+.+|...|++++|.| ..++|++++.||.|+|||+..+.++..+.+|..+|+|++|--+| +|++|
T Consensus 186 pktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~g-liySg 264 (480)
T KOG0271|consen 186 PKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEG-LIYSG 264 (480)
T ss_pred CCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCc-eEEec
Confidence 998765 467899999999999976 46799999999999999999999999999999999999998665 89999
Q ss_pred ECCCeEEEEECCCCceEEEeeecCCCeEEEEEc-----------CCCc-------------------------EEEEEeC
Q 001462 161 GFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFH-----------PLEF-------------------------LLATGSA 204 (1074)
Q Consensus 161 s~DGsI~VWDl~tgk~v~~~~~h~g~ItsLafS-----------Pdg~-------------------------lLaTGS~ 204 (1074)
+.|++|++|+...|.+...+++|...|+.|+++ |.++ .|++|+.
T Consensus 265 S~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsD 344 (480)
T KOG0271|consen 265 SQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSD 344 (480)
T ss_pred CCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecC
Confidence 999999999999999999999999999999876 2233 4999999
Q ss_pred CCeEEEEECCC-CcEEEeeCCCCCCeEEEEEecCCCEEEEE-ECCcEEEEEecCCeeeeccccC-CceeeEEEecCCCEE
Q 001462 205 DRTVKFWDLET-FELIGSTRPEVTGVHAITFHPDGRTLFSG-FDDNLKVYSWEPVICHDSVDMG-WSTLGDLCINDGKLL 281 (1074)
Q Consensus 205 DGtI~IWDl~t-g~~i~t~~~~~~~ItsIafSPDG~~LasG-sd~~I~Vwd~~s~~~~~~l~~~-~s~~~~l~spDGklL 281 (1074)
|.++.+|+... .+++..+.+|..-|..+.|+||++|++++ .|..+++|+-++++....+..+ ..+..+.++.|.++|
T Consensus 345 d~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLl 424 (480)
T KOG0271|consen 345 DFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLL 424 (480)
T ss_pred CceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEE
Confidence 99999999765 45788889999999999999999999996 5778999999999998888744 456677788999999
Q ss_pred EEEECCCeEEEEEcCCCceeeeecCCCCCCCCceeEEEEcCCCCc
Q 001462 282 GCSFYRNSVGIWVADVSHVEPYGVGAPEPDQSICTEVKFNPPGSH 326 (1074)
Q Consensus 282 Asgs~DGsV~IWDld~~~l~~~~~~~~~~~~~~ItsVaFSPDGs~ 326 (1074)
++|+.|.++++|++..+++..-. .+|.+.|.++.|+|||.+
T Consensus 425 VS~SkDsTLKvw~V~tkKl~~DL----pGh~DEVf~vDwspDG~r 465 (480)
T KOG0271|consen 425 VSGSKDSTLKVWDVRTKKLKQDL----PGHADEVFAVDWSPDGQR 465 (480)
T ss_pred EEcCCCceEEEEEeeeeeecccC----CCCCceEEEEEecCCCce
Confidence 99999999999999877766543 579999999999999993
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-36 Score=332.81 Aligned_cols=282 Identities=26% Similarity=0.515 Sum_probs=265.9
Q ss_pred ecCCCCEEEEEEecCCCcEEEEEECCCeEEEEECCCCceEEEeeCCCCCeEEEEEcCC--CCEEEEEEcCCeEEEEEcCC
Q 001462 12 VAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSA--EVLVLAGASTGVIKLWDLEE 89 (1074)
Q Consensus 12 ~gHs~~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~k~l~sl~~hs~~ItsLafSpd--g~~LatGs~DG~I~VWDl~t 89 (1074)
.|-+.+|..+.|+.++ ..|+||+.+|.+++|+..+...+..+.+|...|.++.|+|. +..|++|+.||.+++|++.+
T Consensus 172 ~gd~rPis~~~fS~ds-~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~ 250 (459)
T KOG0272|consen 172 VGDTRPISGCSFSRDS-KHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQ 250 (459)
T ss_pred ccCCCcceeeEeecCC-CeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCC
Confidence 3567899999999999 89999999999999999999999999999999999999996 67999999999999999999
Q ss_pred CeeEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEE
Q 001462 90 SKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVW 169 (1074)
Q Consensus 90 gk~i~tl~~h~~~VtsLafSPdg~~LaSgS~DGsI~IWDi~tg~~v~~l~~h~~~VtsLafSPdG~~LaSgs~DGsI~VW 169 (1074)
..++..+.+|...|..++|+|+|++|++++.|.+-++||+.++..+....+|...|.+++|.+||.++++|+.|..-+||
T Consensus 251 e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvW 330 (459)
T KOG0272|consen 251 ETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVW 330 (459)
T ss_pred CcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhhee
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ECCCCceEEEeeecCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCCcEEEeeCCCCCCeEEEEEec-CCCEEEE-EECC
Q 001462 170 DLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHP-DGRTLFS-GFDD 247 (1074)
Q Consensus 170 Dl~tgk~v~~~~~h~g~ItsLafSPdg~lLaTGS~DGtI~IWDl~tg~~i~t~~~~~~~ItsIafSP-DG~~Las-Gsd~ 247 (1074)
|+++|.++..+.+|..+|.+++|+|+|..||+|+.|++++|||++....+..+..|..-|+.+.|+| .|.+|++ +.|+
T Consensus 331 DlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~ 410 (459)
T KOG0272|consen 331 DLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDN 410 (459)
T ss_pred ecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999998 6788887 4788
Q ss_pred cEEEEEecCCeeeeccccCC-ceeeEEEecCCCEEEEEECCCeEEEEE
Q 001462 248 NLKVYSWEPVICHDSVDMGW-STLGDLCINDGKLLGCSFYRNSVGIWV 294 (1074)
Q Consensus 248 ~I~Vwd~~s~~~~~~l~~~~-s~~~~l~spDGklLAsgs~DGsV~IWD 294 (1074)
.++||.-..+.+...+..+. .++++-.++|+.+++++++|.++++|.
T Consensus 411 t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 411 TVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred ceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 89999999999888877654 456666779999999999999999994
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-35 Score=322.99 Aligned_cols=289 Identities=23% Similarity=0.383 Sum_probs=261.8
Q ss_pred cCceEEEEecCCCCEEEEEEecCCCcEEEEEECCCeEEEEECCCCceE-EEeeCCCCCeEEEEEcC-----CCCEEEEEE
Q 001462 4 RGYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTAL-MSLCGLSSPVDSVAFDS-----AEVLVLAGA 77 (1074)
Q Consensus 4 tG~~v~~L~gHs~~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~k~l-~sl~~hs~~ItsLafSp-----dg~~LatGs 77 (1074)
+..+++..++|...|.||+|+||| ..||+|+.||.|++||..+++++ ..+.+|...|++++|.| ..++|++++
T Consensus 146 TeTp~~t~KgH~~WVlcvawsPDg-k~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~s 224 (480)
T KOG0271|consen 146 TETPLFTCKGHKNWVLCVAWSPDG-KKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSS 224 (480)
T ss_pred CCCcceeecCCccEEEEEEECCCc-chhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceeccc
Confidence 345678899999999999999999 88999999999999999887665 56899999999999976 567999999
Q ss_pred cCCeEEEEEcCCCeeEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeCCCCCeEEEEEc------
Q 001462 78 STGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFT------ 151 (1074)
Q Consensus 78 ~DG~I~VWDl~tgk~i~tl~~h~~~VtsLafSPdg~~LaSgS~DGsI~IWDi~tg~~v~~l~~h~~~VtsLafS------ 151 (1074)
.||.|+|||+..+.++..+.+|..+|+|++|--+ .+|++|+.|++|++|+...|.+...+++|...|+.++++
T Consensus 225 kDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~-gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LR 303 (480)
T KOG0271|consen 225 KDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGE-GLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLR 303 (480)
T ss_pred CCCCEEEEEccCceEEEEeccCccceEEEEEcCC-ceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhh
Confidence 9999999999999999999999999999999843 489999999999999999999999999999999999877
Q ss_pred -----CCCC-------------------------EEEEEECCCeEEEEECCCC-ceEEEeeecCCCeEEEEEcCCCcEEE
Q 001462 152 -----PDGR-------------------------WVVSGGFDNVVKVWDLTAG-KLLHDFKFHEGHIRSIDFHPLEFLLA 200 (1074)
Q Consensus 152 -----PdG~-------------------------~LaSgs~DGsI~VWDl~tg-k~v~~~~~h~g~ItsLafSPdg~lLa 200 (1074)
|.++ .|++|+.|+++.+|+-... +++..+.+|..-|..+.|+||+.+++
T Consensus 304 tgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IA 383 (480)
T KOG0271|consen 304 TGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIA 383 (480)
T ss_pred ccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEE
Confidence 2233 4999999999999997554 47778889999999999999999999
Q ss_pred EEeCCCeEEEEECCCCcEEEeeCCCCCCeEEEEEecCCCEEEEEE-CCcEEEEEecCCeeeeccc-cCCceeeEEEecCC
Q 001462 201 TGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGF-DDNLKVYSWEPVICHDSVD-MGWSTLGDLCINDG 278 (1074)
Q Consensus 201 TGS~DGtI~IWDl~tg~~i~t~~~~~~~ItsIafSPDG~~LasGs-d~~I~Vwd~~s~~~~~~l~-~~~s~~~~l~spDG 278 (1074)
+++.|..|++||.++|+.+..|.+|...|+.++|+.|.++|++|+ |.++++|++.+.+....++ +...++..-++|||
T Consensus 384 SaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG 463 (480)
T KOG0271|consen 384 SASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDG 463 (480)
T ss_pred EeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCC
Confidence 999999999999999999999999999999999999999999986 5569999999998877777 45567777888999
Q ss_pred CEEEEEECCCeEEEEE
Q 001462 279 KLLGCSFYRNSVGIWV 294 (1074)
Q Consensus 279 klLAsgs~DGsV~IWD 294 (1074)
+.+++|+.|..+++|.
T Consensus 464 ~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 464 QRVASGGKDKVLRLWR 479 (480)
T ss_pred ceeecCCCceEEEeec
Confidence 9999999999999994
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=299.42 Aligned_cols=292 Identities=23% Similarity=0.404 Sum_probs=260.3
Q ss_pred ccCceEEEEecCCCCEEEEEEecCCCcEEEEEECCCeEEEEECC-----CCceEEEeeCCCCCeEEEEEcCCCCEEEEEE
Q 001462 3 KRGYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIG-----KPTALMSLCGLSSPVDSVAFDSAEVLVLAGA 77 (1074)
Q Consensus 3 ktG~~v~~L~gHs~~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~-----t~k~l~sl~~hs~~ItsLafSpdg~~LatGs 77 (1074)
+.-.+...+.+|.+.|+.++..+.+..+|++++.|..+.+|++. .|.....+.+|...|..+..+++|++.++++
T Consensus 3 e~l~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~s 82 (315)
T KOG0279|consen 3 EQLVLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSAS 82 (315)
T ss_pred hhheeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEecc
Confidence 34455667999999999999999988999999999999999873 4667888999999999999999999999999
Q ss_pred cCCeEEEEEcCCCeeEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeCC--CCCeEEEEEcCC--
Q 001462 78 STGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGH--TRGINTIRFTPD-- 153 (1074)
Q Consensus 78 ~DG~I~VWDl~tgk~i~tl~~h~~~VtsLafSPdg~~LaSgS~DGsI~IWDi~tg~~v~~l~~h--~~~VtsLafSPd-- 153 (1074)
.||.+++||+.+++..+.|.+|...|.+++|++|+..+++|+.|.+|.+|++... +..++..+ .+.|.|++|+|+
T Consensus 83 wD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~-ck~t~~~~~~~~WVscvrfsP~~~ 161 (315)
T KOG0279|consen 83 WDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGV-CKYTIHEDSHREWVSCVRFSPNES 161 (315)
T ss_pred ccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeeccc-EEEEEecCCCcCcEEEEEEcCCCC
Confidence 9999999999999999999999999999999999999999999999999998654 44444333 678999999997
Q ss_pred CCEEEEEECCCeEEEEECCCCceEEEeeecCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCCcEEEeeCCCCCCeEEEE
Q 001462 154 GRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAIT 233 (1074)
Q Consensus 154 G~~LaSgs~DGsI~VWDl~tgk~v~~~~~h~g~ItsLafSPdg~lLaTGS~DGtI~IWDl~tg~~i~t~~~~~~~ItsIa 233 (1074)
..+|++++.|+.|++||+++.+....+.+|.+.++.+.++|||.++++|+.||.+.+||++.++.+..+. +...|.+++
T Consensus 162 ~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~-a~~~v~sl~ 240 (315)
T KOG0279|consen 162 NPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLE-AFDIVNSLC 240 (315)
T ss_pred CcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEecc-CCCeEeeEE
Confidence 6799999999999999999999999999999999999999999999999999999999999999977764 457899999
Q ss_pred EecCCCEEEEEECCcEEEEEecCCeeeeccccC----------CceeeEEEecCCCEEEEEECCCeEEEEEcC
Q 001462 234 FHPDGRTLFSGFDDNLKVYSWEPVICHDSVDMG----------WSTLGDLCINDGKLLGCSFYRNSVGIWVAD 296 (1074)
Q Consensus 234 fSPDG~~LasGsd~~I~Vwd~~s~~~~~~l~~~----------~s~~~~l~spDGklLAsgs~DGsV~IWDld 296 (1074)
|+|+..+|+.+.+..|+||+++...++..+... -..+...++.||..|++|..|+.|++|.+.
T Consensus 241 fspnrywL~~at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 241 FSPNRYWLCAATATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred ecCCceeEeeccCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 999999999999999999999988876655332 123456677899999999999999999763
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=289.66 Aligned_cols=286 Identities=33% Similarity=0.611 Sum_probs=259.5
Q ss_pred EEEEecCCCCEEEEEEecCCCcEEEEEECCCeEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEc
Q 001462 8 LQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDL 87 (1074)
Q Consensus 8 v~~L~gHs~~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~k~l~sl~~hs~~ItsLafSpdg~~LatGs~DG~I~VWDl 87 (1074)
++.|.+|.+.|.+++|+|++ .+|++++.||.|++|++.++.....+..|...+..+.|++++++|++++.+|.|.+||+
T Consensus 2 ~~~~~~h~~~i~~~~~~~~~-~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~ 80 (289)
T cd00200 2 RRTLKGHTGGVTCVAFSPDG-KLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDL 80 (289)
T ss_pred chHhcccCCCEEEEEEcCCC-CEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEc
Confidence 45678999999999999998 78999999999999999988888888899999999999999999999999999999999
Q ss_pred CCCeeEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEE
Q 001462 88 EESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVK 167 (1074)
Q Consensus 88 ~tgk~i~tl~~h~~~VtsLafSPdg~~LaSgS~DGsI~IWDi~tg~~v~~l~~h~~~VtsLafSPdG~~LaSgs~DGsI~ 167 (1074)
..++....+..|...+.++.|+++++++++++.+|.|.+||+.+++....+..|...+.+++|+|++.++++++.+|.|+
T Consensus 81 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~ 160 (289)
T cd00200 81 ETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIK 160 (289)
T ss_pred CcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEE
Confidence 99888888888999999999999988888888799999999998888888888888999999999999888888899999
Q ss_pred EEECCCCceEEEeeecCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCCcEEEeeCCCCCCeEEEEEecCCCEEEEEE-C
Q 001462 168 VWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGF-D 246 (1074)
Q Consensus 168 VWDl~tgk~v~~~~~h~g~ItsLafSPdg~lLaTGS~DGtI~IWDl~tg~~i~t~~~~~~~ItsIafSPDG~~LasGs-d 246 (1074)
+||+..++.+..+..|...+.++.|+|++..+++++.||.|++||+..++.+..+..+...+.++.|++++.+++++. +
T Consensus 161 i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 240 (289)
T cd00200 161 LWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSED 240 (289)
T ss_pred EEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCC
Confidence 999999999989988988999999999999999999999999999999988888878888999999999999999887 8
Q ss_pred CcEEEEEecCCeeeeccccC-CceeeEEEecCCCEEEEEECCCeEEEEE
Q 001462 247 DNLKVYSWEPVICHDSVDMG-WSTLGDLCINDGKLLGCSFYRNSVGIWV 294 (1074)
Q Consensus 247 ~~I~Vwd~~s~~~~~~l~~~-~s~~~~l~spDGklLAsgs~DGsV~IWD 294 (1074)
+.+++|++........+..+ ..+....+.+++.+|++++.||.|++|+
T Consensus 241 ~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 241 GTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred CcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 88999999877766655533 3455666778999999999999999995
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-33 Score=297.42 Aligned_cols=285 Identities=23% Similarity=0.395 Sum_probs=259.0
Q ss_pred EEEEecCCCCEEEEEEecCCCcEEEEEECCCeEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEc
Q 001462 8 LQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDL 87 (1074)
Q Consensus 8 v~~L~gHs~~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~k~l~sl~~hs~~ItsLafSpdg~~LatGs~DG~I~VWDl 87 (1074)
-+.|+||.+.|.++.|++|. ++|++++.||.+.|||.-+..+.+.+.....-|..++|+|.|+++|+|+-|....||++
T Consensus 48 rr~LkGH~~Ki~~~~ws~Ds-r~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~l 126 (343)
T KOG0286|consen 48 RRTLKGHLNKIYAMDWSTDS-RRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPL 126 (343)
T ss_pred EEEecccccceeeeEecCCc-CeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEec
Confidence 36799999999999999998 89999999999999999998888888888899999999999999999999999999999
Q ss_pred CCC------eeEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeCCCCCeEEEEEcC-CCCEEEEE
Q 001462 88 EES------KMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTP-DGRWVVSG 160 (1074)
Q Consensus 88 ~tg------k~i~tl~~h~~~VtsLafSPdg~~LaSgS~DGsI~IWDi~tg~~v~~l~~h~~~VtsLafSP-dG~~LaSg 160 (1074)
... ...+.+.+|.+.+.|+.|.. ...|++++.|.+..+||+++++.+..|.+|.+.|.++.++| +++.|++|
T Consensus 127 s~~d~~g~~~v~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg 205 (343)
T KOG0286|consen 127 STRDAEGNVRVSRELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSG 205 (343)
T ss_pred ccccccccceeeeeecCccceeEEEEEcC-CCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEec
Confidence 754 45677899999999999997 45689999999999999999999999999999999999999 99999999
Q ss_pred ECCCeEEEEECCCCceEEEeeecCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCCcEEEeeCC--CCCCeEEEEEecCC
Q 001462 161 GFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRP--EVTGVHAITFHPDG 238 (1074)
Q Consensus 161 s~DGsI~VWDl~tgk~v~~~~~h~g~ItsLafSPdg~lLaTGS~DGtI~IWDl~tg~~i~t~~~--~~~~ItsIafSPDG 238 (1074)
+.|+..++||++.+..++.|.+|+..|.++.|.|+|.-+++|+.|++.++||++..+.+..+.. ...+|++++|+..|
T Consensus 206 ~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SG 285 (343)
T KOG0286|consen 206 GCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSG 285 (343)
T ss_pred ccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccc
Confidence 9999999999999999999999999999999999999999999999999999999888877654 34689999999999
Q ss_pred CEEEEEE-CCcEEEEEecCCeeeeccccCCce-eeEEEecCCCEEEEEECCCeEEEEE
Q 001462 239 RTLFSGF-DDNLKVYSWEPVICHDSVDMGWST-LGDLCINDGKLLGCSFYRNSVGIWV 294 (1074)
Q Consensus 239 ~~LasGs-d~~I~Vwd~~s~~~~~~l~~~~s~-~~~l~spDGklLAsgs~DGsV~IWD 294 (1074)
++|++|. |.++.+||.-.......+..+... .+.-.+|||-.|++|++|..++||.
T Consensus 286 RlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 286 RLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred cEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 9999975 556999998877777666655444 4455669999999999999999993
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-34 Score=317.00 Aligned_cols=250 Identities=28% Similarity=0.494 Sum_probs=240.1
Q ss_pred cCceEEEEecCCCCEEEEEEecC-CCcEEEEEECCCeEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeE
Q 001462 4 RGYKLQEFVAHSANVNCISIGKK-ACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVI 82 (1074)
Q Consensus 4 tG~~v~~L~gHs~~Vt~IafSPd-g~~lLaTGs~DGtV~IWDl~t~k~l~sl~~hs~~ItsLafSpdg~~LatGs~DG~I 82 (1074)
....++.|.||.+.|.++.|+|. ...-+|+|+.||++++|++.....+..+.+|...|..++|+|+|++|++++.|.+-
T Consensus 206 ~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tW 285 (459)
T KOG0272|consen 206 QCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTW 285 (459)
T ss_pred CcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccch
Confidence 45678899999999999999998 35689999999999999999989999999999999999999999999999999999
Q ss_pred EEEEcCCCeeEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEEC
Q 001462 83 KLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGF 162 (1074)
Q Consensus 83 ~VWDl~tgk~i~tl~~h~~~VtsLafSPdg~~LaSgS~DGsI~IWDi~tg~~v~~l~~h~~~VtsLafSPdG~~LaSgs~ 162 (1074)
++||+.++..+....+|...|.+++|++||..+++|+.|..-+|||+++|.++..+.+|..+|..++|+|+|..|++|+.
T Consensus 286 RlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~ 365 (459)
T KOG0272|consen 286 RLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSS 365 (459)
T ss_pred hhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCC
Confidence 99999999998888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEECCCCceEEEeeecCCCeEEEEEcC-CCcEEEEEeCCCeEEEEECCCCcEEEeeCCCCCCeEEEEEecCCCEE
Q 001462 163 DNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHP-LEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTL 241 (1074)
Q Consensus 163 DGsI~VWDl~tgk~v~~~~~h~g~ItsLafSP-dg~lLaTGS~DGtI~IWDl~tg~~i~t~~~~~~~ItsIafSPDG~~L 241 (1074)
|++++|||++..+.+..+.+|..-|+.++|+| .|.+|++++.|++++||...++.+++.+.+|.+.|.++.+++|+.++
T Consensus 366 Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i 445 (459)
T KOG0272|consen 366 DNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAI 445 (459)
T ss_pred CCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCCceE
Confidence 99999999999999999999999999999999 68999999999999999999999999999999999999999999999
Q ss_pred EEE-ECCcEEEEE
Q 001462 242 FSG-FDDNLKVYS 253 (1074)
Q Consensus 242 asG-sd~~I~Vwd 253 (1074)
+++ .|.++++|.
T Consensus 446 ~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 446 ATSSFDRTIKLWR 458 (459)
T ss_pred EEeccCceeeecc
Confidence 985 688899994
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.1e-30 Score=302.82 Aligned_cols=733 Identities=17% Similarity=0.188 Sum_probs=458.0
Q ss_pred CEEEEEEcCCeEEEEEcCCCeeEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeCCCCCeEEEEE
Q 001462 71 VLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRF 150 (1074)
Q Consensus 71 ~~LatGs~DG~I~VWDl~tgk~i~tl~~h~~~VtsLafSPdg~~LaSgS~DGsI~IWDi~tg~~v~~l~~h~~~VtsLaf 150 (1074)
.+++.+..+-.+++||.+. +..|...+.++..-..++.+++|+.|..+-+|.+.....+..+.+|..+|.++.|
T Consensus 5 ~~~m~~~~~t~Lr~~~~~~------~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f 78 (825)
T KOG0267|consen 5 EFLMKTKRATKLRVWDTRE------FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTF 78 (825)
T ss_pred cccceeeeeeccccccchh------hhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeec
Confidence 3444555556677888643 3457777888887777889999999999999999888888889999999999999
Q ss_pred cCCCCEEEEEECCCeEEEEECCCCceEEEeeecCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCCcEEEeeCCCCCCeE
Q 001462 151 TPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVH 230 (1074)
Q Consensus 151 SPdG~~LaSgs~DGsI~VWDl~tgk~v~~~~~h~g~ItsLafSPdg~lLaTGS~DGtI~IWDl~tg~~i~t~~~~~~~It 230 (1074)
+++..+|++|..+|.|++||+..++.++.+.+|...+.++.|+|.+.+.+.|+.|+.+++||++...+.+.+.+|...+.
T Consensus 79 ~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~ 158 (825)
T KOG0267|consen 79 DTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVD 158 (825)
T ss_pred CcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcceeE
Confidence 99999999999999999999999999999999999999999999999999999999999999998889999999999999
Q ss_pred EEEEecCCCEEEEEEC-CcEEEEEecCCeeeeccccCC-ceeeEEEecCCCEEEEEECCCeEEEEEcCCCceeeeecCCC
Q 001462 231 AITFHPDGRTLFSGFD-DNLKVYSWEPVICHDSVDMGW-STLGDLCINDGKLLGCSFYRNSVGIWVADVSHVEPYGVGAP 308 (1074)
Q Consensus 231 sIafSPDG~~LasGsd-~~I~Vwd~~s~~~~~~l~~~~-s~~~~l~spDGklLAsgs~DGsV~IWDld~~~l~~~~~~~~ 308 (1074)
.+.|+|+|+|++.|.+ +.++|||...+.....+..+. .....-+.|..-+++.|+.|+.|++||++.-.+ ... .
T Consensus 159 ~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~--I~s--~ 234 (825)
T KOG0267|consen 159 VLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEV--ISS--G 234 (825)
T ss_pred EEeecCCCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCceeeeeccceeEE--eec--c
Confidence 9999999999999766 779999999888877776433 333333556677899999999999999863222 221 1
Q ss_pred CCCCCceeEEEEcCCCCcceeEEEEEeccCcceEEeecCCcccceEEEeecCCCCccceeeecCCCCCCCCCCCCChhhh
Q 001462 309 EPDQSICTEVKFNPPGSHSLEKVGIIGRSTSGFRSTSPDYETKDIKTIYVDSTGGKPVASQKIGPLNSPKVVPPLDSEEI 388 (1074)
Q Consensus 309 ~~~~~~ItsVaFSPDGs~~Lv~vlavG~stG~~r~ivpD~et~eI~~i~iDs~gGepv~~~~~sP~~s~k~~~~~~~~~l 388 (1074)
.+....|.+++|+|||.. .. .|+++....
T Consensus 235 ~~~~~~v~~~~fn~~~~~-----~~----------------------------~G~q~sl~~------------------ 263 (825)
T KOG0267|consen 235 KPETDGVRSLAFNPDGKI-----VL----------------------------SGEQISLSE------------------ 263 (825)
T ss_pred CCccCCceeeeecCCcee-----ee----------------------------cCchhhhhh------------------
Confidence 455788999999999982 11 222211111
Q ss_pred hhhhcccCCCCCCCCCccccccccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCcchhhcc
Q 001462 389 SDLQTEKQNPAIGVPELSNGQALDKSFIVPSIVPQESPAGKDSSFSAGESITFSRTKPGMLLRPAHVQKPSNSKYDAERL 468 (1074)
Q Consensus 389 ~~~~s~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (1074)
+++.+ +|+|+ +..+++.+..
T Consensus 264 -------------------------------------------------~~~a~----------ah~~~-~~~~~Ep~~~ 283 (825)
T KOG0267|consen 264 -------------------------------------------------SRTAS----------AHVRK-TLARWEPEMD 283 (825)
T ss_pred -------------------------------------------------hhccc----------ceeec-cccccccccc
Confidence 00000 56666 3444444443
Q ss_pred ccccccccccCCCCCCCcccCCCcccccccCCCcccccccccccccccccccccccCCCCCCCCcCCCCCCCCCCCCCce
Q 001462 469 STAAESESLNSKKSDLDSAVDPNVKTRFVSSDGARKSCEEKDCHIKTITGEIENIFSPQKPPKQEDGDKSRDCSKITNSV 548 (1074)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 548 (1074)
.-.+.+-. .+...+-...+|.....+ .++..+++++.. ..|
T Consensus 284 ~~~vqs~~--~~ek~v~v~~d~~~ln~~---------------~s~~~~~kl~~~----------------------~~~ 324 (825)
T KOG0267|consen 284 GAVVQSNS--HKEKVVAVGRDPQDLNAF---------------SSKVNLSKLEDS----------------------TYV 324 (825)
T ss_pred cceeeecC--CcccccccccCccccccc---------------cccccccccccc----------------------ccc
Confidence 32222111 122222223333332222 133334443321 001
Q ss_pred eeeeceeeecCCccchhhhhhhhccc-cccccccccccccccccccccccccCCCccccCCCcccccccccccccCCccc
Q 001462 549 KFVNGVAVVPGRTRSLVERFERREKV-NSNEDLAANVIPQTRLSRNEDQAADVTPQTTLSSNEDHVANVTSQTRLNGNEY 627 (1074)
Q Consensus 549 ~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 627 (1074)
-+.++|.+| +|--.. ..+|+....++| .++|.|.+|++.+
T Consensus 325 -------p~l~~t~~l----~rl~~S~q~dep~~~~~k~----------------------------~~~s~t~~~s~~~ 365 (825)
T KOG0267|consen 325 -------PLLKETKSL----GRLSVSYQTDEPLDKSTKP----------------------------HRRSSTSQNSDRS 365 (825)
T ss_pred -------ceeccccch----hccccccccCCCcccCCCC----------------------------ccccccccccccc
Confidence 122333331 110000 011111111111 2456677777666
Q ss_pred cccccccccccccCCCCCCCcCCccCCCCCccccccCCCCCCCCCCc-----cccccc-ccccCCCCCcccceecCcccc
Q 001462 628 QAATAPQQTRLSSNIDPVANVTPQTLPSGNEDQAANVTPQTRPSSNE-----DQTANV-IRQTRPSSNEDQAVIVNPQTR 701 (1074)
Q Consensus 628 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 701 (1074)
.+. ..+++|.+ ++.+|.++.+ ...+...+.-.++|.+.. ++..+| ..++|....+++|.++|++++
T Consensus 366 ~~~-s~P~~r~~------s~~~~di~~~-s~~lss~e~~~~~P~r~s~tn~~k~~sgvSs~~~rs~ts~~~~~k~n~ka~ 437 (825)
T KOG0267|consen 366 EVE-SKPLTRES------SNLSPDIPKE-SRTLSSTESNSEYPHRVSPTNPVKIVSGVSSSVTRSPTSPVNPGKANPKAE 437 (825)
T ss_pred ccc-cCcccccc------CCCCcccccc-cccccccccCCCCCCcccccCccccccccccccccCCCCCCCccccCcccc
Confidence 663 34455533 4556677666 788888886667776655 445554 899999999999999999999
Q ss_pred cCCCccccc----cCCC----CCCCCCCccccccc--CCccccccccccccccccccCCCCccccccCCCCcccCCCccc
Q 001462 702 RHSNEDQAS----NIAP----YTRHDRNEDRATNI--TPQSKISRNQDQATNITSHMGLNSNENRATNIPSRSRLNSRED 771 (1074)
Q Consensus 702 ~~~~~~~~~----~~~~----~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 771 (1074)
.++.+.+.. +..| .+.-.-+.+..... .+..++.+|++ +|..+++.+... +++.|++
T Consensus 438 ~~~~e~~~~~v~~~~~p~~~q~~Esp~~~~~~arttP~s~~P~~~~~r--~~~rs~~~~~~s--------t~~~rts--- 504 (825)
T KOG0267|consen 438 IASVEQDNNPVIQDPLPTIEQATESPVPSTRIARTTPASVQPIALNSR--SNSRSDPPPPTS--------TVPERTS--- 504 (825)
T ss_pred ccccccccccccCCCcccccccccCccccccccccCCccccccccccc--ccCCCCCCCccc--------ccccccc---
Confidence 866642221 1111 11111111111112 23344566666 777777766444 4455666
Q ss_pred ccCCCCCceeecccccccCCCccccccccccccccCCCcccccCcccccccccccccccccccccccccccccccccCcc
Q 001462 772 QSTNTPSQTIVNGAENKATKTPTQMRLKSSENQVTSTPPRARLNSSIEGQATNIPIRRRFNRNVDQTTNVTRHRRSISNT 851 (1074)
Q Consensus 772 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 851 (1074)
....+|+++.+++-.--+.++..+ ....+-+..+.-++.++|+.++++-..-..--+-++++|
T Consensus 505 -sspvmpv~lp~~s~~ty~~~~v~a-------------~~~a~~s~~r~~~~~~~~a~~~~~~~~~~~l~r~r~~~p--- 567 (825)
T KOG0267|consen 505 -SSPVMPVILPQASMSTYPEPPVGA-------------SSTARTSSARILPVTFNQANNISSEEAPVTLRRQRRNSP--- 567 (825)
T ss_pred -cCCccccccCCCcccccCCCCccc-------------cCcccccccccccccccccccccCcCCccccccccCCCc---
Confidence 456677777766522122111111 124455667777888888888876655555533333333
Q ss_pred ccccccceeecccCCccccccccCccccccccccC-CCCCCC-cccCCCCCCCCchhHHHHHHhhhHHHHHHHhhccchh
Q 001462 852 DQATSTTAHVAVKNNDDIATVITPHVTALSYERTS-TPKGEP-QISGRDTPVANEGEAVESLMETHDIFISTLRSRLTKL 929 (1074)
Q Consensus 852 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~e~~~~~~~~~~h~~~~~~l~sR~~~l 929 (1074)
-+--++..++..+|..|.--. -++-+-+...+. +...-+ .+|....++....++...-.... +-.+++.++
T Consensus 568 a~~~~tk~~~~~~~t~~~s~i--asr~r~s~t~~~~tPa~~~~~~~mt~~et~~t~~~~q~~n~~~-ee~~~s~~e---- 640 (825)
T KOG0267|consen 568 ARVMPTKLNQSVNMTSDTSHI--ASRHRVSPTQMLATPAVIDQVGDMTADETRPTNMQPQRDNLVQ-EEPIISDRE---- 640 (825)
T ss_pred ccccccccchhhcccccccch--hhhhccCccccccccceeccccccccccccccccccccccccc-cccccCcch----
Confidence 222233444444443322111 011111111111 122223 36776666655554442211111 122222222
Q ss_pred hHHHhhhhccchhHHHHHHHcCCCceeehhHHHHHhhhchhhhHhHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHH
Q 001462 930 QVVRHFWERNDIKGGINALRKLPDHSVQADVMSVLMEKMEILNLDLFLCLLPMLMGLLDSKMERHASISLEMLLKLVVVF 1009 (1074)
Q Consensus 930 ~~~~~~w~~~~i~~ai~~~~~~~d~sv~~dv~~~l~~~~~~~~L~~c~~~lp~~~~ll~s~~e~~~~~~l~~l~~~~~~f 1009 (1074)
.| ....+.+-.| -+++=+-+-|++.--.|.+--|..+++.|..|....+-......|+.|-..+.++
T Consensus 641 ---------ed---I~e~im~~Hd-e~lstlqSRl~kLqiVR~~Wer~DiK~sI~s~~kl~D~sV~ADvL~Iltek~eiL 707 (825)
T KOG0267|consen 641 ---------ED---IVEDIMGTHN-EFLSTLQSRLTKLQIVRHFWERSDIKGSIGSLRKLADNSVQADVLNILTEKIEIL 707 (825)
T ss_pred ---------hh---hhhhhhhcch-HHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhhhHHHHHHHHHhhhhhHh
Confidence 22 2333333344 2222222333333338999999999999999999998888889999999999999
Q ss_pred hhhhhhhcCCCC-CccccchhhHHhhHHHHHHHHHHHHHHHhhHHHHhcCcc
Q 001462 1010 GPMIHSTLSAPP-AVGVDLHAEQRRECCNRCFMQLQKIQKILPILERRGGLL 1060 (1074)
Q Consensus 1010 ~~~i~~~~~~~~-~vgvd~~ae~R~~~~~~c~~~l~~i~~~~~~l~~~~g~~ 1060 (1074)
+-.+.+.+.-.. .++++.+++++..+|..|.++|+-.-....+.....-.+
T Consensus 708 tLDl~t~l~P~lt~LLgS~~e~~v~vsld~Llklv~~fgt~I~stlsAp~~V 759 (825)
T KOG0267|consen 708 TLDLCTQLLPVLTALLGSKTERPVNVSLDMLLKLVAVFGTVIYSTLSAPRSV 759 (825)
T ss_pred hHHHHHHHHHHHHHHhcccchhhhhhHHHHHHHHHHHhhhhhhhhhhCCccc
Confidence 999999888766 999999999999999999999987777777666554333
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.2e-30 Score=288.32 Aligned_cols=317 Identities=18% Similarity=0.326 Sum_probs=271.3
Q ss_pred EecCCCCEEEEEEecCCCcEEEEEECCCeEEEEECCCC----ceEEEe------eC----CCCCeEEEEEcCCCCEEEEE
Q 001462 11 FVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKP----TALMSL------CG----LSSPVDSVAFDSAEVLVLAG 76 (1074)
Q Consensus 11 L~gHs~~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~----k~l~sl------~~----hs~~ItsLafSpdg~~LatG 76 (1074)
+..|...|.+.+|+|-...+|++|+.|-..++|++... .....+ .+ ....|++++|+.+|..|++|
T Consensus 174 vl~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG 253 (524)
T KOG0273|consen 174 VLRHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATG 253 (524)
T ss_pred eccCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEe
Confidence 33499999999999987558999999999999998531 110011 11 23679999999999999999
Q ss_pred EcCCeEEEEEcCCCeeEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCE
Q 001462 77 ASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRW 156 (1074)
Q Consensus 77 s~DG~I~VWDl~tgk~i~tl~~h~~~VtsLafSPdg~~LaSgS~DGsI~IWDi~tg~~v~~l~~h~~~VtsLafSPdG~~ 156 (1074)
+.||.+++|+. +|.++.++..|.++|.++.|+..|.||++++.||++.+||..++...+.+..|..+...+.|-.+ ..
T Consensus 254 ~~~G~~riw~~-~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~-~~ 331 (524)
T KOG0273|consen 254 SEDGEARIWNK-DGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSN-DE 331 (524)
T ss_pred ecCcEEEEEec-CchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecC-ce
Confidence 99999999996 67788899999999999999999999999999999999999999999999888887678899755 45
Q ss_pred EEEEECCCeEEEEECCCCceEEEeeecCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCCcEEEeeCCCCCCeEEEEEec
Q 001462 157 VVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHP 236 (1074)
Q Consensus 157 LaSgs~DGsI~VWDl~tgk~v~~~~~h~g~ItsLafSPdg~lLaTGS~DGtI~IWDl~tg~~i~t~~~~~~~ItsIafSP 236 (1074)
|++++.||.|+|+.+....++.++.+|.+.|.+|.|+|.|.+|++++.|++++||+.........+..|...|..+.|+|
T Consensus 332 F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp 411 (524)
T KOG0273|consen 332 FATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSP 411 (524)
T ss_pred EeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecC
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC---------CEEE-EEECCcEEEEEecCCeeeecc-ccCCceeeEEEecCCCEEEEEECCCeEEEEEcCCCceeeeec
Q 001462 237 DG---------RTLF-SGFDDNLKVYSWEPVICHDSV-DMGWSTLGDLCINDGKLLGCSFYRNSVGIWVADVSHVEPYGV 305 (1074)
Q Consensus 237 DG---------~~La-sGsd~~I~Vwd~~s~~~~~~l-~~~~s~~~~l~spDGklLAsgs~DGsV~IWDld~~~l~~~~~ 305 (1074)
+| ..++ ++.++.+++||...+.+...+ .+...+....|+|+|+|+|+|+.||.|+||+...+.+..-
T Consensus 412 ~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s-- 489 (524)
T KOG0273|consen 412 TGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKS-- 489 (524)
T ss_pred CCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEe--
Confidence 75 3344 468889999999999988887 5555666777889999999999999999998876665443
Q ss_pred CCCCCCCCceeEEEEcCCCCcceeEEEEEeccCc
Q 001462 306 GAPEPDQSICTEVKFNPPGSHSLEKVGIIGRSTS 339 (1074)
Q Consensus 306 ~~~~~~~~~ItsVaFSPDGs~~Lv~vlavG~stG 339 (1074)
....+.|..|+|+.+|+ .+....+.|
T Consensus 490 ---~~~~~~Ifel~Wn~~G~-----kl~~~~sd~ 515 (524)
T KOG0273|consen 490 ---YQGTGGIFELCWNAAGD-----KLGACASDG 515 (524)
T ss_pred ---ecCCCeEEEEEEcCCCC-----EEEEEecCC
Confidence 24456799999999998 444444444
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.98 E-value=2e-30 Score=275.34 Aligned_cols=250 Identities=25% Similarity=0.475 Sum_probs=222.2
Q ss_pred ccCceEEEEecCCCCEEEEEEecCCCcEEEEEECCCeEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeE
Q 001462 3 KRGYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVI 82 (1074)
Q Consensus 3 ktG~~v~~L~gHs~~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~k~l~sl~~hs~~ItsLafSpdg~~LatGs~DG~I 82 (1074)
+.|..++.|.||...|..+..++|| +++++++.|+.+++||+.+++....|.+|...|.+++|++|.+.+++|+.|.+|
T Consensus 51 ~~G~~~r~~~GHsH~v~dv~~s~dg-~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTi 129 (315)
T KOG0279|consen 51 KYGVPVRRLTGHSHFVSDVVLSSDG-NFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTI 129 (315)
T ss_pred ccCceeeeeeccceEecceEEccCC-ceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCccee
Confidence 4688999999999999999999999 899999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCeeEEEEeCC-CCCeEEEEEcCC--CCEEEEEECCCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEE
Q 001462 83 KLWDLEESKMVRTLTGH-KSNCTAVEFHPF--GEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVS 159 (1074)
Q Consensus 83 ~VWDl~tgk~i~tl~~h-~~~VtsLafSPd--g~~LaSgS~DGsI~IWDi~tg~~v~~l~~h~~~VtsLafSPdG~~LaS 159 (1074)
.+|++-.+......... .+.|.|++|+|+ ..+|++++.|+.|++||+++.+....+.+|.+.++.++++|||.++++
T Consensus 130 klwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcas 209 (315)
T KOG0279|consen 130 KLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCAS 209 (315)
T ss_pred eeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEec
Confidence 99998655443333322 788999999998 679999999999999999999999999999999999999999999999
Q ss_pred EECCCeEEEEECCCCceEEEeeecCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCCcEEEeeCCCC---------CCeE
Q 001462 160 GGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEV---------TGVH 230 (1074)
Q Consensus 160 gs~DGsI~VWDl~tgk~v~~~~~h~g~ItsLafSPdg~lLaTGS~DGtI~IWDl~tg~~i~t~~~~~---------~~It 230 (1074)
|+.||.+.+||++.++.+..+. |...|.+++|+|+..+|+.+. +..|+|||+.++.++..+.... ....
T Consensus 210 Ggkdg~~~LwdL~~~k~lysl~-a~~~v~sl~fspnrywL~~at-~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~cl 287 (315)
T KOG0279|consen 210 GGKDGEAMLWDLNEGKNLYSLE-AFDIVNSLCFSPNRYWLCAAT-ATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICL 287 (315)
T ss_pred CCCCceEEEEEccCCceeEecc-CCCeEeeEEecCCceeEeecc-CCceEEEeccchhhhhhccccccccccccCCcEEE
Confidence 9999999999999999988877 788899999999987777665 4569999999988776654322 2246
Q ss_pred EEEEecCCCEEEEE-ECCcEEEEEec
Q 001462 231 AITFHPDGRTLFSG-FDDNLKVYSWE 255 (1074)
Q Consensus 231 sIafSPDG~~LasG-sd~~I~Vwd~~ 255 (1074)
+++|++||..|++| .++.|++|.+.
T Consensus 288 slaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 288 SLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred EEEEcCCCcEEEeeecCCcEEEEEee
Confidence 78999999999998 57779999864
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.98 E-value=7.7e-31 Score=284.95 Aligned_cols=288 Identities=22% Similarity=0.454 Sum_probs=260.1
Q ss_pred EEEEecCCCCEEEEEEecCCCcEEEEEECCCeEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEc
Q 001462 8 LQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDL 87 (1074)
Q Consensus 8 v~~L~gHs~~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~k~l~sl~~hs~~ItsLafSpdg~~LatGs~DG~I~VWDl 87 (1074)
.+.+.+|.++|.|+++.|.+ .+|++|+.|++++|||+.+++...++.+|-..|..+++++-..||++++.|+.|+.||+
T Consensus 144 ~rVi~gHlgWVr~vavdP~n-~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDL 222 (460)
T KOG0285|consen 144 YRVISGHLGWVRSVAVDPGN-EWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDL 222 (460)
T ss_pred hhhhhhccceEEEEeeCCCc-eeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEec
Confidence 45678999999999999987 89999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeeEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEE
Q 001462 88 EESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVK 167 (1074)
Q Consensus 88 ~tgk~i~tl~~h~~~VtsLafSPdg~~LaSgS~DGsI~IWDi~tg~~v~~l~~h~~~VtsLafSPdG~~LaSgs~DGsI~ 167 (1074)
+..+.++.+.+|-..|+|++.+|.-+.|++|+.|..+++||+++...++.+.+|..+|..+.+.|-...+++|+.|++|+
T Consensus 223 e~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvr 302 (460)
T KOG0285|consen 223 EYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVR 302 (460)
T ss_pred hhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999777899999999999
Q ss_pred EEECCCCceEEEeeecCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCCcEEEeeCCCCCCeEEEEEecCCCEEEEEECC
Q 001462 168 VWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGFDD 247 (1074)
Q Consensus 168 VWDl~tgk~v~~~~~h~g~ItsLafSPdg~lLaTGS~DGtI~IWDl~tg~~i~t~~~~~~~ItsIafSPDG~~LasGsd~ 247 (1074)
+||++.|+....+..|...+.+++.+|....+++++.| .|+-|++..|..+..+.+|..-|.+++...||-++..|..+
T Consensus 303 lWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~d-nik~w~~p~g~f~~nlsgh~~iintl~~nsD~v~~~G~dng 381 (460)
T KOG0285|consen 303 LWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNLSGHNAIINTLSVNSDGVLVSGGDNG 381 (460)
T ss_pred EeeeccCceeEeeecccceeeEEecCCchhhhhccCCc-cceeccCCccchhhccccccceeeeeeeccCceEEEcCCce
Confidence 99999999999999999999999999999999999876 69999999999999999999999999999887665555666
Q ss_pred cEEEEEecCCeeeecc---------ccCCceeeEEEecCCCEEEEEECCCeEEEEEcCC
Q 001462 248 NLKVYSWEPVICHDSV---------DMGWSTLGDLCINDGKLLGCSFYRNSVGIWVADV 297 (1074)
Q Consensus 248 ~I~Vwd~~s~~~~~~l---------~~~~s~~~~l~spDGklLAsgs~DGsV~IWDld~ 297 (1074)
.+.+|||+.+...... .....+....|-..|..|++|..|.+|++|.-+.
T Consensus 382 ~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~keDe 440 (460)
T KOG0285|consen 382 SIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYKEDE 440 (460)
T ss_pred EEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEeccc
Confidence 7999999986654332 1222334444446788999999999999997653
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.4e-29 Score=262.40 Aligned_cols=282 Identities=28% Similarity=0.518 Sum_probs=244.4
Q ss_pred EEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeeEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC
Q 001462 52 MSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRK 131 (1074)
Q Consensus 52 ~sl~~hs~~ItsLafSpdg~~LatGs~DG~I~VWDl~tgk~i~tl~~h~~~VtsLafSPdg~~LaSgS~DGsI~IWDi~t 131 (1074)
..+.+|..+|.+++|+|++.+|++++.+|.|.+|++.+++....+..|...+..+.|++++++|++++.+|.|++||+..
T Consensus 3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~ 82 (289)
T cd00200 3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLET 82 (289)
T ss_pred hHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCc
Confidence 34668999999999999999999999999999999999888888888999999999999999999999999999999998
Q ss_pred CeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeeecCCCeEEEEEcCCCcEEEEEeCCCeEEEE
Q 001462 132 KGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFW 211 (1074)
Q Consensus 132 g~~v~~l~~h~~~VtsLafSPdG~~LaSgs~DGsI~VWDl~tgk~v~~~~~h~g~ItsLafSPdg~lLaTGS~DGtI~IW 211 (1074)
++.+..+..|...+.++.|++++.++++++.+|.|.+||+.+++....+..|...+.+++|+|++.++++++.||.|++|
T Consensus 83 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~ 162 (289)
T cd00200 83 GECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLW 162 (289)
T ss_pred ccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEE
Confidence 88888888888899999999998888888889999999999999988888899999999999999999988889999999
Q ss_pred ECCCCcEEEeeCCCCCCeEEEEEecCCCEEEEEE-CCcEEEEEecCCeeeecc-ccCCceeeEEEecCCCEEEEEECCCe
Q 001462 212 DLETFELIGSTRPEVTGVHAITFHPDGRTLFSGF-DDNLKVYSWEPVICHDSV-DMGWSTLGDLCINDGKLLGCSFYRNS 289 (1074)
Q Consensus 212 Dl~tg~~i~t~~~~~~~ItsIafSPDG~~LasGs-d~~I~Vwd~~s~~~~~~l-~~~~s~~~~l~spDGklLAsgs~DGs 289 (1074)
|+.+++.+..+..+...+.++.|++++..+++++ ++.+.+|++........+ ..........+.+++.++++++.+|.
T Consensus 163 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 242 (289)
T cd00200 163 DLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGT 242 (289)
T ss_pred EccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCc
Confidence 9999888888888888999999999998777764 778999999887776666 33345566667788888888888999
Q ss_pred EEEEEcCCCceeeeecCCCCCCCCceeEEEEcCCCCcceeEEEEEeccCcceE
Q 001462 290 VGIWVADVSHVEPYGVGAPEPDQSICTEVKFNPPGSHSLEKVGIIGRSTSGFR 342 (1074)
Q Consensus 290 V~IWDld~~~l~~~~~~~~~~~~~~ItsVaFSPDGs~~Lv~vlavG~stG~~r 342 (1074)
|++|++..+...... ..+...+.+++|+|+|. .++.+...|.++
T Consensus 243 i~i~~~~~~~~~~~~----~~~~~~i~~~~~~~~~~-----~l~~~~~d~~i~ 286 (289)
T cd00200 243 IRVWDLRTGECVQTL----SGHTNSVTSLAWSPDGK-----RLASGSADGTIR 286 (289)
T ss_pred EEEEEcCCceeEEEc----cccCCcEEEEEECCCCC-----EEEEecCCCeEE
Confidence 999999755433332 36677899999999988 566666666433
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.5e-29 Score=269.91 Aligned_cols=283 Identities=18% Similarity=0.330 Sum_probs=251.8
Q ss_pred EEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeeEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC
Q 001462 51 LMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIR 130 (1074)
Q Consensus 51 l~sl~~hs~~ItsLafSpdg~~LatGs~DG~I~VWDl~tgk~i~tl~~h~~~VtsLafSPdg~~LaSgS~DGsI~IWDi~ 130 (1074)
...+++|...|+++.|++|.++|++++.||.+.|||.-+....+-+.-....|..++|+|.|+++++|+.|....||++.
T Consensus 48 rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls 127 (343)
T KOG0286|consen 48 RRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLS 127 (343)
T ss_pred EEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecc
Confidence 46789999999999999999999999999999999999888888888788899999999999999999999999999998
Q ss_pred CC------eEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeeecCCCeEEEEEcC-CCcEEEEEe
Q 001462 131 KK------GCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHP-LEFLLATGS 203 (1074)
Q Consensus 131 tg------~~v~~l~~h~~~VtsLafSPdG~~LaSgs~DGsI~VWDl~tgk~v~~~~~h~g~ItsLafSP-dg~lLaTGS 203 (1074)
+. .....+.+|.+.+.|+.|.+|+ +|++++.|.+..+||+++|+.+..|.+|.+.|.+++++| +++.+++|+
T Consensus 128 ~~d~~g~~~v~r~l~gHtgylScC~f~dD~-~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~ 206 (343)
T KOG0286|consen 128 TRDAEGNVRVSRELAGHTGYLSCCRFLDDN-HILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGG 206 (343)
T ss_pred cccccccceeeeeecCccceeEEEEEcCCC-ceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecc
Confidence 54 3456788999999999999865 689999999999999999999999999999999999999 999999999
Q ss_pred CCCeEEEEECCCCcEEEeeCCCCCCeEEEEEecCCCEEEEEECC-cEEEEEecCCeeeeccccC---CceeeEEEecCCC
Q 001462 204 ADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGFDD-NLKVYSWEPVICHDSVDMG---WSTLGDLCINDGK 279 (1074)
Q Consensus 204 ~DGtI~IWDl~tg~~i~t~~~~~~~ItsIafSPDG~~LasGsd~-~I~Vwd~~s~~~~~~l~~~---~s~~~~l~spDGk 279 (1074)
.|+..++||++.+.+...|.+|...|.++.|.|+|.-+++|+|+ ..++||++.......+... ..+..+.|+..|+
T Consensus 207 cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGR 286 (343)
T KOG0286|consen 207 CDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGR 286 (343)
T ss_pred cccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEccccc
Confidence 99999999999999999999999999999999999999999765 5999999987766665433 3456777888999
Q ss_pred EEEEEECCCeEEEEEcCCCceeeeecCCCCCCCCceeEEEEcCCCCcceeEEEEEeccCcceEE
Q 001462 280 LLGCSFYRNSVGIWVADVSHVEPYGVGAPEPDQSICTEVKFNPPGSHSLEKVGIIGRSTSGFRS 343 (1074)
Q Consensus 280 lLAsgs~DGsV~IWDld~~~l~~~~~~~~~~~~~~ItsVaFSPDGs~~Lv~vlavG~stG~~r~ 343 (1074)
+|.+|..|..+.+||.-.++..... .+|...|.++..+|||. .++.|.-..++++
T Consensus 287 lLfagy~d~~c~vWDtlk~e~vg~L----~GHeNRvScl~~s~DG~-----av~TgSWDs~lri 341 (343)
T KOG0286|consen 287 LLFAGYDDFTCNVWDTLKGERVGVL----AGHENRVSCLGVSPDGM-----AVATGSWDSTLRI 341 (343)
T ss_pred EEEeeecCCceeEeeccccceEEEe----eccCCeeEEEEECCCCc-----EEEecchhHheee
Confidence 9999999999999987544443333 58999999999999999 7777776655443
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.2e-29 Score=291.59 Aligned_cols=325 Identities=21% Similarity=0.373 Sum_probs=282.4
Q ss_pred CCCEEEEEEecCCCcEEEEEECCCeEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEEEEcC-CeEEEEEcCCCeeE
Q 001462 15 SANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGAST-GVIKLWDLEESKMV 93 (1074)
Q Consensus 15 s~~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~k~l~sl~~hs~~ItsLafSpdg~~LatGs~D-G~I~VWDl~tgk~i 93 (1074)
...|+|.+|++.. .+|++|-..|...||.+.....++.+.-...+|..+.|+..|.+|+.|+.. |++.||+|+....+
T Consensus 265 ~~kvtaa~fH~~t-~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYV 343 (893)
T KOG0291|consen 265 SSKVTAAAFHKGT-NLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYV 343 (893)
T ss_pred ccceeeeeccCCc-eEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeecccee
Confidence 3789999999987 899999999999999999999999998888999999999999999999875 89999999999888
Q ss_pred EEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC
Q 001462 94 RTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTA 173 (1074)
Q Consensus 94 ~tl~~h~~~VtsLafSPdg~~LaSgS~DGsI~IWDi~tg~~v~~l~~h~~~VtsLafSPdG~~LaSgs~DGsI~VWDl~t 173 (1074)
...++|...+.+++++|||+++++|+.||.|+|||...+-|+.++..|...|+.+.|+..|+.+++++.||+|+.||+..
T Consensus 344 lKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkR 423 (893)
T KOG0291|consen 344 LKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKR 423 (893)
T ss_pred eeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecc
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEeeecC-CCeEEEEEcCCCcEEEEEeCCC-eEEEEECCCCcEEEeeCCCCCCeEEEEEecCCCEEEEE-ECCcEE
Q 001462 174 GKLLHDFKFHE-GHIRSIDFHPLEFLLATGSADR-TVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSG-FDDNLK 250 (1074)
Q Consensus 174 gk~v~~~~~h~-g~ItsLafSPdg~lLaTGS~DG-tI~IWDl~tg~~i~t~~~~~~~ItsIafSPDG~~LasG-sd~~I~ 250 (1074)
....++|.... -...|++..|.|.+++.|+.|. .|++|++.+|+.+..+.+|.++|.+++|+|+|..|++| .|.+++
T Consensus 424 YrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVR 503 (893)
T KOG0291|consen 424 YRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVR 503 (893)
T ss_pred cceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEE
Confidence 99988887533 3467889999999999999886 49999999999999999999999999999999999997 688899
Q ss_pred EEEecC-CeeeeccccCCceeeEEEecCCCEEEEEECCCeEEEEEcCCCceeee---------------ecC-CCCCCCC
Q 001462 251 VYSWEP-VICHDSVDMGWSTLGDLCINDGKLLGCSFYRNSVGIWVADVSHVEPY---------------GVG-APEPDQS 313 (1074)
Q Consensus 251 Vwd~~s-~~~~~~l~~~~s~~~~l~spDGklLAsgs~DGsV~IWDld~~~l~~~---------------~~~-~~~~~~~ 313 (1074)
+|++-. ...+..+......+...+.|||+-|++++.||.|.+||......... ... .......
T Consensus 504 iW~if~s~~~vEtl~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K 583 (893)
T KOG0291|consen 504 IWDIFSSSGTVETLEIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGK 583 (893)
T ss_pred EEEeeccCceeeeEeeccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCC
Confidence 999754 45566677777888999999999999999999999999743322200 000 0012246
Q ss_pred ceeEEEEcCCCCcceeEEEEEeccCcceEEeecC
Q 001462 314 ICTEVKFNPPGSHSLEKVGIIGRSTSGFRSTSPD 347 (1074)
Q Consensus 314 ~ItsVaFSPDGs~~Lv~vlavG~stG~~r~ivpD 347 (1074)
..+.++||+||.. +++.|.+.. +++.+
T Consensus 584 ~Ftti~ySaDG~~----IlAgG~sn~---iCiY~ 610 (893)
T KOG0291|consen 584 TFTTICYSADGKC----ILAGGESNS---ICIYD 610 (893)
T ss_pred ceEEEEEcCCCCE----EEecCCccc---EEEEE
Confidence 8899999999994 555666654 44444
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.9e-30 Score=286.85 Aligned_cols=278 Identities=23% Similarity=0.400 Sum_probs=258.8
Q ss_pred CCEEEEEEecCCCcEEEEEECCCeEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeeEEE
Q 001462 16 ANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRT 95 (1074)
Q Consensus 16 ~~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~k~l~sl~~hs~~ItsLafSpdg~~LatGs~DG~I~VWDl~tgk~i~t 95 (1074)
..|++++|+.+| .+||+|..||.++||+. .|..+.++..|.++|.++.|+..|.||++++.||++.+||..+|...+.
T Consensus 236 kdVT~L~Wn~~G-~~LatG~~~G~~riw~~-~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~ 313 (524)
T KOG0273|consen 236 KDVTSLDWNNDG-TLLATGSEDGEARIWNK-DGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQ 313 (524)
T ss_pred CCcceEEecCCC-CeEEEeecCcEEEEEec-CchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEe
Confidence 579999999999 89999999999999996 6777888999999999999999999999999999999999999999999
Q ss_pred EeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCc
Q 001462 96 LTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGK 175 (1074)
Q Consensus 96 l~~h~~~VtsLafSPdg~~LaSgS~DGsI~IWDi~tg~~v~~l~~h~~~VtsLafSPdG~~LaSgs~DGsI~VWDl~tgk 175 (1074)
+.-|..+-.++.|-. ...|++++.||.|++|.+....++.++.+|.+.|.++.|.|.|.+|++++.|++++||......
T Consensus 314 f~~~s~~~lDVdW~~-~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~ 392 (524)
T KOG0273|consen 314 FEFHSAPALDVDWQS-NDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSN 392 (524)
T ss_pred eeeccCCccceEEec-CceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCc
Confidence 988888878899985 4468888999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEeeecCCCeEEEEEcCCC---------cEEEEEeCCCeEEEEECCCCcEEEeeCCCCCCeEEEEEecCCCEEEEEE-
Q 001462 176 LLHDFKFHEGHIRSIDFHPLE---------FLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGF- 245 (1074)
Q Consensus 176 ~v~~~~~h~g~ItsLafSPdg---------~lLaTGS~DGtI~IWDl~tg~~i~t~~~~~~~ItsIafSPDG~~LasGs- 245 (1074)
....+..|...|+.+.|+|.| ..|++++.|++|++||+..+.++..+..|..+|.+++|+|+|+|+++|+
T Consensus 393 ~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~ 472 (524)
T KOG0273|consen 393 SVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSL 472 (524)
T ss_pred chhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCC
Confidence 999999999999999999964 5789999999999999999999999999999999999999999999984
Q ss_pred CCcEEEEEecCCeeeeccccCCceeeEEEecCCCEEEEEECCCeEEEEEcC
Q 001462 246 DDNLKVYSWEPVICHDSVDMGWSTLGDLCINDGKLLGCSFYRNSVGIWVAD 296 (1074)
Q Consensus 246 d~~I~Vwd~~s~~~~~~l~~~~s~~~~l~spDGklLAsgs~DGsV~IWDld 296 (1074)
++.+.+|+...+...+.+.....+....|..+|.+|..+..||.+++-|+.
T Consensus 473 dg~V~iws~~~~~l~~s~~~~~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 473 DGCVHIWSTKTGKLVKSYQGTGGIFELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred CCeeEeccccchheeEeecCCCeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence 777999999999999988888888888888999999999999999998763
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.3e-29 Score=289.84 Aligned_cols=329 Identities=21% Similarity=0.375 Sum_probs=277.1
Q ss_pred eEEEEecCCCCEEEEEEecCCCcEEEEEECCCeEEEEECCCCce--EEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEE
Q 001462 7 KLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTA--LMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKL 84 (1074)
Q Consensus 7 ~v~~L~gHs~~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~k~--l~sl~~hs~~ItsLafSpdg~~LatGs~DG~I~V 84 (1074)
..+.+.+|...|.+|.|+.|. ++|++|+.|-.++||++...+. ...+.+|...|.++-|..+...+++.+.||.+.+
T Consensus 137 l~r~~~g~fddi~si~Ws~DS-r~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~ 215 (893)
T KOG0291|consen 137 LHRTYLGHFDDITSIDWSDDS-RLLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGANSLDLYTVSKDGALFV 215 (893)
T ss_pred EeeeecCCccceeEEEeccCC-ceEEeccccceEEEEEeccccccceEeccCCCcceEEEEeccCcceEEEEecCceEEE
Confidence 456789999999999999998 9999999999999999976655 5667899999999999999999999999999999
Q ss_pred EEcCC-----------------------Cee-----E-------------------------------------------
Q 001462 85 WDLEE-----------------------SKM-----V------------------------------------------- 93 (1074)
Q Consensus 85 WDl~t-----------------------gk~-----i------------------------------------------- 93 (1074)
|.... ++. .
T Consensus 216 W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP 295 (893)
T KOG0291|consen 216 WTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELP 295 (893)
T ss_pred EEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecC
Confidence 97650 110 0
Q ss_pred -----EEEeCCCCCeEEEEEcCCCCEEEEEECC-CeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEE
Q 001462 94 -----RTLTGHKSNCTAVEFHPFGEFFASGCMD-TNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVK 167 (1074)
Q Consensus 94 -----~tl~~h~~~VtsLafSPdg~~LaSgS~D-GsI~IWDi~tg~~v~~l~~h~~~VtsLafSPdG~~LaSgs~DGsI~ 167 (1074)
+.+.-....|..+.|+..|++|+.|+.. |.+.||++.....+...++|...+.+++++|||.++++|+.||.|+
T Consensus 296 ~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVK 375 (893)
T KOG0291|consen 296 DFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVK 375 (893)
T ss_pred CceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEE
Confidence 0011112446666777777888877654 7888888888888888889999999999999999999999999999
Q ss_pred EEECCCCceEEEeeecCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCCcEEEeeCCC-CCCeEEEEEecCCCEEEEEEC
Q 001462 168 VWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPE-VTGVHAITFHPDGRTLFSGFD 246 (1074)
Q Consensus 168 VWDl~tgk~v~~~~~h~g~ItsLafSPdg~lLaTGS~DGtI~IWDl~tg~~i~t~~~~-~~~ItsIafSPDG~~LasGsd 246 (1074)
|||...|-+..+|..|...|+.++|+..|+.|++.+-||+|+.||+..+....++... .-...+++..|.|..+++|..
T Consensus 376 vWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~ 455 (893)
T KOG0291|consen 376 VWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQ 455 (893)
T ss_pred EEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeecc
Confidence 9999999999999999999999999999999999999999999999999888887654 344678899999999999876
Q ss_pred Cc--EEEEEecCCeeeeccccCCceeeE-EEecCCCEEEEEECCCeEEEEEcCCC--ceeeeecCCCCCCCCceeEEEEc
Q 001462 247 DN--LKVYSWEPVICHDSVDMGWSTLGD-LCINDGKLLGCSFYRNSVGIWVADVS--HVEPYGVGAPEPDQSICTEVKFN 321 (1074)
Q Consensus 247 ~~--I~Vwd~~s~~~~~~l~~~~s~~~~-l~spDGklLAsgs~DGsV~IWDld~~--~l~~~~~~~~~~~~~~ItsVaFS 321 (1074)
+. |.||++++++....+..+..++.. .+.++|..|+++++|.+|++|++=.. ..+++. +...+..++|+
T Consensus 456 d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~------i~sdvl~vsfr 529 (893)
T KOG0291|consen 456 DSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLE------IRSDVLAVSFR 529 (893)
T ss_pred ceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEe------eccceeEEEEc
Confidence 64 999999999999999888777665 56689999999999999999998433 555554 35679999999
Q ss_pred CCCCcceeEEEEEeccCcceEEeecC
Q 001462 322 PPGSHSLEKVGIIGRSTSGFRSTSPD 347 (1074)
Q Consensus 322 PDGs~~Lv~vlavG~stG~~r~ivpD 347 (1074)
|||+ -+++.+..|.+.++-..
T Consensus 530 PdG~-----elaVaTldgqItf~d~~ 550 (893)
T KOG0291|consen 530 PDGK-----ELAVATLDGQITFFDIK 550 (893)
T ss_pred CCCC-----eEEEEEecceEEEEEhh
Confidence 9999 67788888877777554
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.6e-29 Score=281.09 Aligned_cols=342 Identities=17% Similarity=0.236 Sum_probs=287.8
Q ss_pred CCccCceEEEEecCCCCEEEEEEecCCCcEEEEEECCCeEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEEEEcCC
Q 001462 1 MAKRGYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTG 80 (1074)
Q Consensus 1 LaktG~~v~~L~gHs~~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~k~l~sl~~hs~~ItsLafSpdg~~LatGs~DG 80 (1074)
|..+|..+.++.||...|++++|-|..+..+++|+.|+.|.+|+=.-.+....+..|..-|.|+.|+|||.++++.+.||
T Consensus 133 ~~DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDg 212 (603)
T KOG0318|consen 133 LWDSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDG 212 (603)
T ss_pred EecCCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCc
Confidence 34678888999999999999999999988999999999999998766677777889999999999999999999999999
Q ss_pred eEEEEEcCCCeeEEEEe---CCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeCCC---CCeEEEEEcCCC
Q 001462 81 VIKLWDLEESKMVRTLT---GHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHT---RGINTIRFTPDG 154 (1074)
Q Consensus 81 ~I~VWDl~tgk~i~tl~---~h~~~VtsLafSPdg~~LaSgS~DGsI~IWDi~tg~~v~~l~~h~---~~VtsLafSPdG 154 (1074)
.|.+||-.+|+.+..+. .|.+.|+++.|+||+..|++++.|.+++|||+.+.+++.++.... +.-..+.|. +
T Consensus 213 ki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq--k 290 (603)
T KOG0318|consen 213 KIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ--K 290 (603)
T ss_pred cEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEe--C
Confidence 99999999999999998 899999999999999999999999999999999999988885322 233455565 5
Q ss_pred CEEEEEECCCeEEEEECCCCceEEEeeecCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCCcEEEee-CCCCCCeEEEE
Q 001462 155 RWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGST-RPEVTGVHAIT 233 (1074)
Q Consensus 155 ~~LaSgs~DGsI~VWDl~tgk~v~~~~~h~g~ItsLafSPdg~lLaTGS~DGtI~IWDl~tg~~i~t~-~~~~~~ItsIa 233 (1074)
..|++.+.+|.|.+++...+..+..+.+|...|+++..+|++.+|++|+.||.|.-|+..++..-... ..|...|.+++
T Consensus 291 d~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~ 370 (603)
T KOG0318|consen 291 DHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMA 370 (603)
T ss_pred CeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEe
Confidence 57999999999999999999999999999999999999999999999999999999999988765443 56778899999
Q ss_pred EecCCCEEEEEECCcEEEEEecCCee----------------------------------------eeccccCCceeeEE
Q 001462 234 FHPDGRTLFSGFDDNLKVYSWEPVIC----------------------------------------HDSVDMGWSTLGDL 273 (1074)
Q Consensus 234 fSPDG~~LasGsd~~I~Vwd~~s~~~----------------------------------------~~~l~~~~s~~~~l 273 (1074)
-+..+.++.+|.|+.+++.++....+ ....+..+.....+
T Consensus 371 ~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vA 450 (603)
T KOG0318|consen 371 ASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVA 450 (603)
T ss_pred ecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEE
Confidence 88888888889999988887632111 01112334445666
Q ss_pred EecCCCEEEEEECCCeEEEEEcCCCceeeeecCCCCCCCCceeEEEEcCCCCcceeEEEEEeccCcceEEeecCCcccce
Q 001462 274 CINDGKLLGCSFYRNSVGIWVADVSHVEPYGVGAPEPDQSICTEVKFNPPGSHSLEKVGIIGRSTSGFRSTSPDYETKDI 353 (1074)
Q Consensus 274 ~spDGklLAsgs~DGsV~IWDld~~~l~~~~~~~~~~~~~~ItsVaFSPDGs~~Lv~vlavG~stG~~r~ivpD~et~eI 353 (1074)
.++++..++.|+.||.|+||.+....+...... ..|.+.+++++|||||. .++.+...+ ..++.|.+++++
T Consensus 451 v~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~--~~h~a~iT~vaySpd~~-----yla~~Da~r--kvv~yd~~s~~~ 521 (603)
T KOG0318|consen 451 VSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKL--LEHRAAITDVAYSPDGA-----YLAAGDASR--KVVLYDVASREV 521 (603)
T ss_pred EcCCCCEEEEecccceEEEEEecCCcccceeee--ecccCCceEEEECCCCc-----EEEEeccCC--cEEEEEcccCce
Confidence 679999999999999999999987665544332 57899999999999999 666666666 344445555555
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-30 Score=305.19 Aligned_cols=252 Identities=25% Similarity=0.525 Sum_probs=233.9
Q ss_pred eEEEEecCCCCEEEEEEecCCCcEEEEEECCCeEEEEECCC-------------------------------CceEEEee
Q 001462 7 KLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGK-------------------------------PTALMSLC 55 (1074)
Q Consensus 7 ~v~~L~gHs~~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t-------------------------------~k~l~sl~ 55 (1074)
+..++..-...++|..|++|+ .+||.|-.|..|++|.+.. ......+.
T Consensus 370 c~YT~~nt~~~v~ca~fSdds-smlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~ 448 (707)
T KOG0263|consen 370 CMYTFHNTYQGVTCAEFSDDS-SMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLY 448 (707)
T ss_pred EEEEEEEcCCcceeEeecCCc-chhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEee
Confidence 445666666789999999999 6999999999999998742 11234577
Q ss_pred CCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeeEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEE
Q 001462 56 GLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCI 135 (1074)
Q Consensus 56 ~hs~~ItsLafSpdg~~LatGs~DG~I~VWDl~tgk~i~tl~~h~~~VtsLafSPdg~~LaSgS~DGsI~IWDi~tg~~v 135 (1074)
+|.++|+.+.|+|+.++|++++.|+++++|.+.+...+..+++|..+|+++.|+|.|-|||+|+.|++.++|......++
T Consensus 449 GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~Pl 528 (707)
T KOG0263|consen 449 GHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPL 528 (707)
T ss_pred cCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeeecCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCC
Q 001462 136 HTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLET 215 (1074)
Q Consensus 136 ~~l~~h~~~VtsLafSPdG~~LaSgs~DGsI~VWDl~tgk~v~~~~~h~g~ItsLafSPdg~lLaTGS~DGtI~IWDl~t 215 (1074)
+.+.+|...|.|+.|+|+..|+++|+.|.++++||+.+|..++.|.+|.++|.+++|+|+|.+|++|+.||.|.+||+.+
T Consensus 529 RifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~ 608 (707)
T KOG0263|consen 529 RIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLAN 608 (707)
T ss_pred hhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEeeCCCCCCeEEEEEecCCCEEEEE-ECCcEEEEEecCCee
Q 001462 216 FELIGSTRPEVTGVHAITFHPDGRTLFSG-FDDNLKVYSWEPVIC 259 (1074)
Q Consensus 216 g~~i~t~~~~~~~ItsIafSPDG~~LasG-sd~~I~Vwd~~s~~~ 259 (1074)
+..+..+.+|.+.|.++.|+.||..|++| .|+.+++||+.....
T Consensus 609 ~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~ 653 (707)
T KOG0263|consen 609 GSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIE 653 (707)
T ss_pred CcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhhcc
Confidence 99999999999999999999999999995 677899999876544
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-29 Score=274.97 Aligned_cols=314 Identities=17% Similarity=0.245 Sum_probs=279.9
Q ss_pred ceEEEEecCCCCEEEEEEecCCCcEEEEEECCCeEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEE
Q 001462 6 YKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLW 85 (1074)
Q Consensus 6 ~~v~~L~gHs~~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~k~l~sl~~hs~~ItsLafSpdg~~LatGs~DG~I~VW 85 (1074)
..+..|..|++.|.+++.+|+. +++++|+.|..-.||++.++..+..+.+|...|+++.|+.+|.+||+|+.+|.|.||
T Consensus 55 dS~~tF~~H~~svFavsl~P~~-~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~ 133 (399)
T KOG0296|consen 55 DSLVTFDKHTDSVFAVSLHPNN-NLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVF 133 (399)
T ss_pred cceeehhhcCCceEEEEeCCCC-ceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEE
Confidence 4567899999999999999965 899999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCeeEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCe
Q 001462 86 DLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNV 165 (1074)
Q Consensus 86 Dl~tgk~i~tl~~h~~~VtsLafSPdg~~LaSgS~DGsI~IWDi~tg~~v~~l~~h~~~VtsLafSPdG~~LaSgs~DGs 165 (1074)
+..++.....+......+.-+.|||.+..|+.|+.||.|.+|.+.++...+.+.+|..++++-.|.|+|+.++++..||+
T Consensus 134 ~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgt 213 (399)
T KOG0296|consen 134 KVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGT 213 (399)
T ss_pred EcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCce
Confidence 99999998888777788999999999999999999999999999998889999999999999999999999999999999
Q ss_pred EEEEECCCCceEEEeeec-CCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCCcEEEeeCC--------CCCCeEE---EE
Q 001462 166 VKVWDLTAGKLLHDFKFH-EGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRP--------EVTGVHA---IT 233 (1074)
Q Consensus 166 I~VWDl~tgk~v~~~~~h-~g~ItsLafSPdg~lLaTGS~DGtI~IWDl~tg~~i~t~~~--------~~~~Its---Ia 233 (1074)
|++|+..+++++..+... .....++.++..+..++.|..++.+++....+|+.+....+ +...+.+ +.
T Consensus 214 i~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~ 293 (399)
T KOG0296|consen 214 IIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIP 293 (399)
T ss_pred EEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcc
Confidence 999999999998887632 34578889999999999999999999999999988877663 2233344 44
Q ss_pred EecCCCEEEEE-ECCcEEEEEecCCeeeeccccCCceeeEEEecCCCEEEEEECCCeEEEEEcCCCceeeeecCCCCCCC
Q 001462 234 FHPDGRTLFSG-FDDNLKVYSWEPVICHDSVDMGWSTLGDLCINDGKLLGCSFYRNSVGIWVADVSHVEPYGVGAPEPDQ 312 (1074)
Q Consensus 234 fSPDG~~LasG-sd~~I~Vwd~~s~~~~~~l~~~~s~~~~l~spDGklLAsgs~DGsV~IWDld~~~l~~~~~~~~~~~~ 312 (1074)
|+..=.+.++| -++.|.|||+......+...+...++...|.+ ..+|++++.+|.|++||..++.+.... .+|.
T Consensus 294 ~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y----~GH~ 368 (399)
T KOG0296|consen 294 SSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTY----TGHQ 368 (399)
T ss_pred cccccchhhcccccceEEEEecccchhheeccCCCceEEEEEcC-cchheeeccCceEEeeeccccceEEEE----ecCc
Confidence 55555666776 57889999999988888888887888888877 788889999999999999999887766 5889
Q ss_pred CceeEEEEcCCCC
Q 001462 313 SICTEVKFNPPGS 325 (1074)
Q Consensus 313 ~~ItsVaFSPDGs 325 (1074)
..|.+.+.+|+++
T Consensus 369 ~~Il~f~ls~~~~ 381 (399)
T KOG0296|consen 369 MGILDFALSPQKR 381 (399)
T ss_pred hheeEEEEcCCCc
Confidence 9999999999998
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-29 Score=299.01 Aligned_cols=287 Identities=28% Similarity=0.536 Sum_probs=252.4
Q ss_pred EEEecC-CCCEEEEEEecCCCcEEEEEECCCeEEEEECCCCc--eEEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEE
Q 001462 9 QEFVAH-SANVNCISIGKKACRFLITGGDDQKVNLWAIGKPT--ALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLW 85 (1074)
Q Consensus 9 ~~L~gH-s~~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~k--~l~sl~~hs~~ItsLafSpdg~~LatGs~DG~I~VW 85 (1074)
..+.+| ...|.|+.|+++| +++++++.|+.+++|+..... ....+.+|...|.+++|+|++.++++++.|++|+||
T Consensus 152 ~~~~~~~~~sv~~~~fs~~g-~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriw 230 (456)
T KOG0266|consen 152 QTLAGHECPSVTCVDFSPDG-RALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIW 230 (456)
T ss_pred eeecccccCceEEEEEcCCC-CeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEe
Confidence 344444 7899999999999 779999999999999997776 677778999999999999999999999999999999
Q ss_pred Ec-CCCeeEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCC
Q 001462 86 DL-EESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDN 164 (1074)
Q Consensus 86 Dl-~tgk~i~tl~~h~~~VtsLafSPdg~~LaSgS~DGsI~IWDi~tg~~v~~l~~h~~~VtsLafSPdG~~LaSgs~DG 164 (1074)
|+ ..+..++.+.+|...|++++|+|+|+.+++|+.|+.|+|||+++++++..+.+|.+.|.+++|++++.+|++++.||
T Consensus 231 d~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~ 310 (456)
T KOG0266|consen 231 DLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDG 310 (456)
T ss_pred eccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCc
Confidence 99 56689999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEECCCCc--eEEEeeecCCC--eEEEEEcCCCcEEEEEeCCCeEEEEECCCCcEEEeeCCCCCC---eEEEEEecC
Q 001462 165 VVKVWDLTAGK--LLHDFKFHEGH--IRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTG---VHAITFHPD 237 (1074)
Q Consensus 165 sI~VWDl~tgk--~v~~~~~h~g~--ItsLafSPdg~lLaTGS~DGtI~IWDl~tg~~i~t~~~~~~~---ItsIafSPD 237 (1074)
.|++||+.++. +...+..+... +++++|+|++.+|++++.|+.+++||+..+..+..+..|... +.+..+++.
T Consensus 311 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (456)
T KOG0266|consen 311 TIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTG 390 (456)
T ss_pred cEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCC
Confidence 99999999999 55677666555 999999999999999999999999999999999998888764 334456778
Q ss_pred CCEEEEEE-CCcEEEEEecCCeeeeccccC--CceeeEEEecCCCEEEEEE--CCCeEEEEEcC
Q 001462 238 GRTLFSGF-DDNLKVYSWEPVICHDSVDMG--WSTLGDLCINDGKLLGCSF--YRNSVGIWVAD 296 (1074)
Q Consensus 238 G~~LasGs-d~~I~Vwd~~s~~~~~~l~~~--~s~~~~l~spDGklLAsgs--~DGsV~IWDld 296 (1074)
|.++++|+ ++.|++|+.........+..+ .......+.+...++++++ .|+.|++|..+
T Consensus 391 ~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 391 GKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred CCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence 99999986 556999999987766666555 3344555567888999988 68899999764
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.1e-30 Score=281.47 Aligned_cols=289 Identities=21% Similarity=0.426 Sum_probs=266.0
Q ss_pred ceEEEEecCCCCEEEEEEecCCCcEEEEEECCCeEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEE
Q 001462 6 YKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLW 85 (1074)
Q Consensus 6 ~~v~~L~gHs~~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~k~l~sl~~hs~~ItsLafSpdg~~LatGs~DG~I~VW 85 (1074)
...+.+.+|..+|+.+-|+|+- .++++++.|++|++||..+++....+++|...+..+.|+..|++|++++.|-.+.+|
T Consensus 99 ~l~~~l~g~r~~vt~v~~hp~~-~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LW 177 (406)
T KOG0295|consen 99 NLVQKLAGHRSSVTRVIFHPSE-ALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLW 177 (406)
T ss_pred CchhhhhccccceeeeeeccCc-eEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhhe
Confidence 3455678899999999999997 788899999999999999999999999999999999999999999999999999999
Q ss_pred EcCC-CeeEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCC
Q 001462 86 DLEE-SKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDN 164 (1074)
Q Consensus 86 Dl~t-gk~i~tl~~h~~~VtsLafSPdg~~LaSgS~DGsI~IWDi~tg~~v~~l~~h~~~VtsLafSPdG~~LaSgs~DG 164 (1074)
|.++ .++++.+.+|...|.+++|-|.|+++++++.|.+|+.|++.++-++.++.+|...|..+..+.||.++++++.|.
T Consensus 178 d~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dq 257 (406)
T KOG0295|consen 178 DFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQ 257 (406)
T ss_pred eHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCc
Confidence 9986 567778889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEECCCCceEEEeeecCCCeEEEEEcCC---------------CcEEEEEeCCCeEEEEECCCCcEEEeeCCCCCCe
Q 001462 165 VVKVWDLTAGKLLHDFKFHEGHIRSIDFHPL---------------EFLLATGSADRTVKFWDLETFELIGSTRPEVTGV 229 (1074)
Q Consensus 165 sI~VWDl~tgk~v~~~~~h~g~ItsLafSPd---------------g~lLaTGS~DGtI~IWDl~tg~~i~t~~~~~~~I 229 (1074)
+|++|-+.++++...+..|+-+|-+++|.|. +.++.+++.|++|++||+.++.++.++.+|..+|
T Consensus 258 tl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwV 337 (406)
T KOG0295|consen 258 TLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWV 337 (406)
T ss_pred eEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEeccccee
Confidence 9999999999999999999999999999773 2599999999999999999999999999999999
Q ss_pred EEEEEecCCCEEEEEE-CCcEEEEEecCCeeeeccccCCceeeEEEec-CCCEEEEEECCCeEEEEEc
Q 001462 230 HAITFHPDGRTLFSGF-DDNLKVYSWEPVICHDSVDMGWSTLGDLCIN-DGKLLGCSFYRNSVGIWVA 295 (1074)
Q Consensus 230 tsIafSPDG~~LasGs-d~~I~Vwd~~s~~~~~~l~~~~s~~~~l~sp-DGklLAsgs~DGsV~IWDl 295 (1074)
.+++|+|.|+||+++. |+++++||++...|......+......+.++ +.-++++|+-|..+++|..
T Consensus 338 r~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 338 RGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred eeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccceeeeeec
Confidence 9999999999999975 5569999999999999888776666666665 5569999999999999963
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3e-29 Score=262.73 Aligned_cols=287 Identities=20% Similarity=0.323 Sum_probs=245.0
Q ss_pred CcEEEEEECCCeEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCCe--eEEEEeCCCCCeEE
Q 001462 28 CRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESK--MVRTLTGHKSNCTA 105 (1074)
Q Consensus 28 ~~lLaTGs~DGtV~IWDl~t~k~l~sl~~hs~~ItsLafSpdg~~LatGs~DG~I~VWDl~tgk--~i~tl~~h~~~Vts 105 (1074)
.-+|++++.|.+|++|...+|.+..++......|..+...|+++.|++++. -.|++||+.++. ++.++.+|...|.+
T Consensus 10 ~viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVta 88 (311)
T KOG0315|consen 10 PVILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVTA 88 (311)
T ss_pred ceEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceEE
Confidence 358999999999999999999999999988899999999999999999986 469999999765 58899999999999
Q ss_pred EEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeee-cC
Q 001462 106 VEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKF-HE 184 (1074)
Q Consensus 106 LafSPdg~~LaSgS~DGsI~IWDi~tg~~v~~l~~h~~~VtsLafSPdG~~LaSgs~DGsI~VWDl~tgk~v~~~~~-h~ 184 (1074)
+.|..+|+++++|+.||.++|||++...+.+.++ +..+|.++..+|+...|++|..+|.|++||+....+..++-. ..
T Consensus 89 VgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~ 167 (311)
T KOG0315|consen 89 VGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDD 167 (311)
T ss_pred EEEeecCeEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCC
Confidence 9999999999999999999999999977766666 779999999999999999999999999999988866665542 34
Q ss_pred CCeEEEEEcCCCcEEEEEeCCCeEEEEECCCC------cEEEeeCCCCCCeEEEEEecCCCEEEEE-ECCcEEEEEecCC
Q 001462 185 GHIRSIDFHPLEFLLATGSADRTVKFWDLETF------ELIGSTRPEVTGVHAITFHPDGRTLFSG-FDDNLKVYSWEPV 257 (1074)
Q Consensus 185 g~ItsLafSPdg~lLaTGS~DGtI~IWDl~tg------~~i~t~~~~~~~ItsIafSPDG~~LasG-sd~~I~Vwd~~s~ 257 (1074)
..|.++...|||.+|+.+...|..++|++-+. +++.+++.|.+.+..+.+|||++||+++ +|..++||..+..
T Consensus 168 ~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~ 247 (311)
T KOG0315|consen 168 TSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDF 247 (311)
T ss_pred cceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCc
Confidence 67999999999999999999999999998753 4567788899999999999999999985 6778999999987
Q ss_pred -eeeeccccC-CceeeEEEecCCCEEEEEECCCeEEEEEcCCCceeeeecCCCCCCCCceeEEEE
Q 001462 258 -ICHDSVDMG-WSTLGDLCINDGKLLGCSFYRNSVGIWVADVSHVEPYGVGAPEPDQSICTEVKF 320 (1074)
Q Consensus 258 -~~~~~l~~~-~s~~~~l~spDGklLAsgs~DGsV~IWDld~~~l~~~~~~~~~~~~~~ItsVaF 320 (1074)
+....+..+ .-...+.|+.||.||++|+.|+.+++|++..++..... .+|.....|++.
T Consensus 248 ~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy----~gh~K~~vc~~l 308 (311)
T KOG0315|consen 248 FKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQY----QGHHKAAVCVAL 308 (311)
T ss_pred eeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeec----CCcccccEEEEe
Confidence 333333333 23567788899999999999999999999766643332 356555555554
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.7e-30 Score=300.54 Aligned_cols=210 Identities=30% Similarity=0.605 Sum_probs=203.9
Q ss_pred CceEEEEecCCCCEEEEEEecCCCcEEEEEECCCeEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEE
Q 001462 5 GYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKL 84 (1074)
Q Consensus 5 G~~v~~L~gHs~~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~k~l~sl~~hs~~ItsLafSpdg~~LatGs~DG~I~V 84 (1074)
+...+.+.||.++|..+.|+|+. ++|++|+.|++|+||.+.+...+..+.+|..+|+++.|+|.|-|+|+++.|++-++
T Consensus 441 ~~~~~~L~GH~GPVyg~sFsPd~-rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArL 519 (707)
T KOG0263|consen 441 SGTSRTLYGHSGPVYGCSFSPDR-RFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARL 519 (707)
T ss_pred CceeEEeecCCCceeeeeecccc-cceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeee
Confidence 44556799999999999999998 89999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCeeEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCC
Q 001462 85 WDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDN 164 (1074)
Q Consensus 85 WDl~tgk~i~tl~~h~~~VtsLafSPdg~~LaSgS~DGsI~IWDi~tg~~v~~l~~h~~~VtsLafSPdG~~LaSgs~DG 164 (1074)
|......+.+.+.+|...|.|+.|+|+..|+++|+.|.+|++||+.+|..++.|.+|.++|.+++|+|+|++|++|+.||
T Consensus 520 Ws~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~ 599 (707)
T KOG0263|consen 520 WSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDG 599 (707)
T ss_pred eecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEECCCCceEEEeeecCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCC
Q 001462 165 VVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLET 215 (1074)
Q Consensus 165 sI~VWDl~tgk~v~~~~~h~g~ItsLafSPdg~lLaTGS~DGtI~IWDl~t 215 (1074)
.|++||+.++..+..+.+|.+.|.++.|+.+|..|++|+.|.+|++||+..
T Consensus 600 ~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 600 LIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTK 650 (707)
T ss_pred cEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchh
Confidence 999999999999999999999999999999999999999999999999875
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-30 Score=287.41 Aligned_cols=279 Identities=23% Similarity=0.390 Sum_probs=247.0
Q ss_pred CCCEEEEEEecCCCcEEEEEECCCeEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeeEE
Q 001462 15 SANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVR 94 (1074)
Q Consensus 15 s~~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~k~l~sl~~hs~~ItsLafSpdg~~LatGs~DG~I~VWDl~tgk~i~ 94 (1074)
...|..|.|.|+| +.|++|+..|.+.||+......-..+..|..+|.++.|+++|.++++|..+|.|++|+..-. .++
T Consensus 96 kc~V~~v~WtPeG-RRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmn-nVk 173 (464)
T KOG0284|consen 96 KCPVNVVRWTPEG-RRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMN-NVK 173 (464)
T ss_pred ccceeeEEEcCCC-ceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchh-hhH
Confidence 3579999999999 88999999999999997555444556789999999999999999999999999999997543 344
Q ss_pred EEeCC-CCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC
Q 001462 95 TLTGH-KSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTA 173 (1074)
Q Consensus 95 tl~~h-~~~VtsLafSPdg~~LaSgS~DGsI~IWDi~tg~~v~~l~~h~~~VtsLafSPdG~~LaSgs~DGsI~VWDl~t 173 (1074)
.+..| ...|++++|+|+...|++++.||.|+|||....+....+.+|...|.++.|+|...+|++|+.|..|++||.++
T Consensus 174 ~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprS 253 (464)
T KOG0284|consen 174 IIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRS 253 (464)
T ss_pred HhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCC
Confidence 44544 48999999999999999999999999999999988888999999999999999999999999999999999999
Q ss_pred CceEEEeeecCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCCcEEEeeCCCCCCeEEEEEecCCCEEEE--EECCcEEE
Q 001462 174 GKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFS--GFDDNLKV 251 (1074)
Q Consensus 174 gk~v~~~~~h~g~ItsLafSPdg~lLaTGS~DGtI~IWDl~tg~~i~t~~~~~~~ItsIafSPDG~~Las--Gsd~~I~V 251 (1074)
|.++.++..|...|..+.|+|++++|++++.|..+++||+++.+.+..+++|...++++.|+|-..-|++ |.|+.+..
T Consensus 254 g~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh 333 (464)
T KOG0284|consen 254 GSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVH 333 (464)
T ss_pred cchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceEE
Confidence 9999999999999999999999999999999999999999999999999999999999999997554444 68899999
Q ss_pred EEecCCeeeeccc--cCCceeeEEEecCCCEEEEEECCCeEEEEEc
Q 001462 252 YSWEPVICHDSVD--MGWSTLGDLCINDGKLLGCSFYRNSVGIWVA 295 (1074)
Q Consensus 252 wd~~s~~~~~~l~--~~~s~~~~l~spDGklLAsgs~DGsV~IWDl 295 (1074)
|.+........+. +...+....+.|-|.+|++|+.|..+++|.-
T Consensus 334 ~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r 379 (464)
T KOG0284|consen 334 WVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTR 379 (464)
T ss_pred EeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeecc
Confidence 9998555444443 3445667777799999999999999999953
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-30 Score=290.97 Aligned_cols=288 Identities=22% Similarity=0.363 Sum_probs=248.5
Q ss_pred ceEEEEecCCCCEEEEEEecCCCcEEEEEECCCeEEEEECCC-CceEEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEE
Q 001462 6 YKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGK-PTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKL 84 (1074)
Q Consensus 6 ~~v~~L~gHs~~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t-~k~l~sl~~hs~~ItsLafSpdg~~LatGs~DG~I~V 84 (1074)
..++.|.||+..|.++.|.|....+|++|+.|+.|+||++-. +.++.++.+|..+|..++|+.+|..+++++.|+.|++
T Consensus 205 k~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKl 284 (503)
T KOG0282|consen 205 KLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKL 284 (503)
T ss_pred hheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeee
Confidence 346789999999999999995559999999999999999854 8999999999999999999999999999999999999
Q ss_pred EEcCCCeeEEEEeCCCCCeEEEEEcCCC-CEEEEEECCCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECC
Q 001462 85 WDLEESKMVRTLTGHKSNCTAVEFHPFG-EFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFD 163 (1074)
Q Consensus 85 WDl~tgk~i~tl~~h~~~VtsLafSPdg-~~LaSgS~DGsI~IWDi~tg~~v~~l~~h~~~VtsLafSPdG~~LaSgs~D 163 (1074)
||+++|+++..+. ....++|+.|+|++ +.|++|+.|+.|+.||+++++.++.+..|-+.|..+.|-++|.++++.+.|
T Consensus 285 wDtETG~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDd 363 (503)
T KOG0282|consen 285 WDTETGQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDD 363 (503)
T ss_pred eccccceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccC
Confidence 9999999999987 56778999999998 789999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEECCCCceEEEee-ecCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCCc---EEEeeCCCC--CCeEEEEEecC
Q 001462 164 NVVKVWDLTAGKLLHDFK-FHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFE---LIGSTRPEV--TGVHAITFHPD 237 (1074)
Q Consensus 164 GsI~VWDl~tgk~v~~~~-~h~g~ItsLafSPdg~lLaTGS~DGtI~IWDl~tg~---~i~t~~~~~--~~ItsIafSPD 237 (1074)
+.++||+.+.+-.+.... .+.-...++..+|++.+++.-+.|..|.+|.+...- ....+.+|. +.-..+.||||
T Consensus 364 ks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpD 443 (503)
T KOG0282|consen 364 KSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPD 443 (503)
T ss_pred ccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCC
Confidence 999999998876654432 233456789999999999999999999999876321 223344443 44678899999
Q ss_pred CCEEEEE-ECCcEEEEEecCCeeeeccccCCceeeEEEe-c-CCCEEEEEECCCeEEEEE
Q 001462 238 GRTLFSG-FDDNLKVYSWEPVICHDSVDMGWSTLGDLCI-N-DGKLLGCSFYRNSVGIWV 294 (1074)
Q Consensus 238 G~~LasG-sd~~I~Vwd~~s~~~~~~l~~~~s~~~~l~s-p-DGklLAsgs~DGsV~IWD 294 (1074)
|.+|++| ++|.+.+|||++......+..+..++..+.+ | ....+|++++||.|++|+
T Consensus 444 G~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 444 GRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred CCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 9999998 5677999999999888888877555555444 4 346789999999999995
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.5e-28 Score=303.75 Aligned_cols=282 Identities=20% Similarity=0.287 Sum_probs=235.8
Q ss_pred EEecCCCCEEEEEEecCCCcEEEEEECCCeEEEEECCCC----c----eEEEeeCCCCCeEEEEEcC-CCCEEEEEEcCC
Q 001462 10 EFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKP----T----ALMSLCGLSSPVDSVAFDS-AEVLVLAGASTG 80 (1074)
Q Consensus 10 ~L~gHs~~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~----k----~l~sl~~hs~~ItsLafSp-dg~~LatGs~DG 80 (1074)
.+..|.+.|.+++|+|+| .+||+|+.||.|+||++... . ....+. +...+.+++|++ ++.+|++++.||
T Consensus 478 ~~~~~~~~V~~i~fs~dg-~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg 555 (793)
T PLN00181 478 DLLNSSNLVCAIGFDRDG-EFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEG 555 (793)
T ss_pred cccCCCCcEEEEEECCCC-CEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCC
Confidence 355699999999999998 89999999999999997531 1 122233 356789999987 578999999999
Q ss_pred eEEEEEcCCCeeEEEEeCCCCCeEEEEEcC-CCCEEEEEECCCeEEEEECCCCeEEEEEeCCCCCeEEEEEc-CCCCEEE
Q 001462 81 VIKLWDLEESKMVRTLTGHKSNCTAVEFHP-FGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFT-PDGRWVV 158 (1074)
Q Consensus 81 ~I~VWDl~tgk~i~tl~~h~~~VtsLafSP-dg~~LaSgS~DGsI~IWDi~tg~~v~~l~~h~~~VtsLafS-PdG~~La 158 (1074)
.|++||+.+++.+..+.+|...|++++|+| ++.+|++|+.||.|++||++++..+..+..+ ..+.++.|+ ++|.+|+
T Consensus 556 ~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~~la 634 (793)
T PLN00181 556 VVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK-ANICCVQFPSESGRSLA 634 (793)
T ss_pred eEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC-CCeEEEEEeCCCCCEEE
Confidence 999999999999999999999999999997 7889999999999999999999988888754 578999995 5799999
Q ss_pred EEECCCeEEEEECCCCc-eEEEeeecCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCC------CcEEEeeCCCCCCeEE
Q 001462 159 SGGFDNVVKVWDLTAGK-LLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLET------FELIGSTRPEVTGVHA 231 (1074)
Q Consensus 159 Sgs~DGsI~VWDl~tgk-~v~~~~~h~g~ItsLafSPdg~lLaTGS~DGtI~IWDl~t------g~~i~t~~~~~~~Its 231 (1074)
+|+.||.|++||++.++ .+..+.+|...|.++.|. ++.+|++++.|++|++||+.. +..+..+.+|...+..
T Consensus 635 tgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~ 713 (793)
T PLN00181 635 FGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNF 713 (793)
T ss_pred EEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeE
Confidence 99999999999998776 466778899999999997 678999999999999999974 3567788889889999
Q ss_pred EEEecCCCEEEEEE-CCcEEEEEecCCeeeecc-------------c-cCCceeeEEEecCCCEEEEEECCCeEEEEEc
Q 001462 232 ITFHPDGRTLFSGF-DDNLKVYSWEPVICHDSV-------------D-MGWSTLGDLCINDGKLLGCSFYRNSVGIWVA 295 (1074)
Q Consensus 232 IafSPDG~~LasGs-d~~I~Vwd~~s~~~~~~l-------------~-~~~s~~~~l~spDGklLAsgs~DGsV~IWDl 295 (1074)
++|++++.+|++|+ |+.+++|+.........+ . ....+....|.+++.+|++|+.||.|+||++
T Consensus 714 v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 714 VGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred EEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 99999999999985 667999997543221110 1 1112445556689999999999999999985
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.5e-28 Score=284.72 Aligned_cols=265 Identities=28% Similarity=0.485 Sum_probs=234.0
Q ss_pred CCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCCe--eEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEC-CCCe
Q 001462 57 LSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESK--MVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDI-RKKG 133 (1074)
Q Consensus 57 hs~~ItsLafSpdg~~LatGs~DG~I~VWDl~tgk--~i~tl~~h~~~VtsLafSPdg~~LaSgS~DGsI~IWDi-~tg~ 133 (1074)
+...|.++.|+++|++|++++.++.+++|++..++ ..+.+.+|...|.+++|+|+++++++++.|+.|+|||+ ..+.
T Consensus 158 ~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~ 237 (456)
T KOG0266|consen 158 ECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGR 237 (456)
T ss_pred ccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCe
Confidence 36889999999999999999999999999998777 77778899999999999999999999999999999999 5568
Q ss_pred EEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeeecCCCeEEEEEcCCCcEEEEEeCCCeEEEEEC
Q 001462 134 CIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDL 213 (1074)
Q Consensus 134 ~v~~l~~h~~~VtsLafSPdG~~LaSgs~DGsI~VWDl~tgk~v~~~~~h~g~ItsLafSPdg~lLaTGS~DGtI~IWDl 213 (1074)
.++.+++|...|++++|+|+|+++++|+.|+.|++||+++++++..+.+|.+.|.+++|++++.+|++++.||.|++||+
T Consensus 238 ~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~ 317 (456)
T KOG0266|consen 238 NLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDL 317 (456)
T ss_pred EEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEEC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCc--EEEeeCCCCCC--eEEEEEecCCCEEEEEECC-cEEEEEecCCeeeeccccCCce----eeEEEecCCCEEEEE
Q 001462 214 ETFE--LIGSTRPEVTG--VHAITFHPDGRTLFSGFDD-NLKVYSWEPVICHDSVDMGWST----LGDLCINDGKLLGCS 284 (1074)
Q Consensus 214 ~tg~--~i~t~~~~~~~--ItsIafSPDG~~LasGsd~-~I~Vwd~~s~~~~~~l~~~~s~----~~~l~spDGklLAsg 284 (1074)
.++. +...+..+... ++++.|+|+|.+++++..+ .+++|++....+...+..+... .....+++|.++.+|
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg 397 (456)
T KOG0266|consen 318 ETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSG 397 (456)
T ss_pred CCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEE
Confidence 9999 55666665544 9999999999999998766 7999999987766655443332 223335799999999
Q ss_pred ECCCeEEEEEcCCCceeeeecCCCCCC-CCceeEEEEcCCCC
Q 001462 285 FYRNSVGIWVADVSHVEPYGVGAPEPD-QSICTEVKFNPPGS 325 (1074)
Q Consensus 285 s~DGsV~IWDld~~~l~~~~~~~~~~~-~~~ItsVaFSPDGs 325 (1074)
+.|+.|++|++..+...... .+| ...+..++|+|...
T Consensus 398 ~~d~~v~~~~~~s~~~~~~l----~~h~~~~~~~~~~~~~~~ 435 (456)
T KOG0266|consen 398 SEDGSVYVWDSSSGGILQRL----EGHSKAAVSDLSSHPTEN 435 (456)
T ss_pred eCCceEEEEeCCccchhhhh----cCCCCCceeccccCCCcC
Confidence 99999999999865554444 466 78899999999888
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.5e-28 Score=251.50 Aligned_cols=266 Identities=24% Similarity=0.397 Sum_probs=233.3
Q ss_pred CccCceEEEEecCCCCEEEEEEecCCCcEEEEEECCCeEEEEECCCC--ceEEEeeCCCCCeEEEEEcCCCCEEEEEEcC
Q 001462 2 AKRGYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKP--TALMSLCGLSSPVDSVAFDSAEVLVLAGAST 79 (1074)
Q Consensus 2 aktG~~v~~L~gHs~~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~--k~l~sl~~hs~~ItsLafSpdg~~LatGs~D 79 (1074)
+.+|.+.++++...+.|+.+.+.|++ ++||+|+. ..|++||+.++ .++..+.+|...|+++.|..+|+++++|+.|
T Consensus 27 a~tG~C~rTiqh~dsqVNrLeiTpdk-~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseD 104 (311)
T KOG0315|consen 27 ALTGICSRTIQHPDSQVNRLEITPDK-KDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSED 104 (311)
T ss_pred hhcCeEEEEEecCccceeeEEEcCCc-chhhhccC-CeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCC
Confidence 35789999999889999999999998 77887776 57999999665 4688999999999999999999999999999
Q ss_pred CeEEEEEcCCCeeEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEe-CCCCCeEEEEEcCCCCEEE
Q 001462 80 GVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYK-GHTRGINTIRFTPDGRWVV 158 (1074)
Q Consensus 80 G~I~VWDl~tgk~i~tl~~h~~~VtsLafSPdg~~LaSgS~DGsI~IWDi~tg~~v~~l~-~h~~~VtsLafSPdG~~La 158 (1074)
|+++|||++.-...+.+. |..+|.++..+|+...|++|..+|.|++||+....+.+.+- .....|.++...|||.+++
T Consensus 105 gt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~ 183 (311)
T KOG0315|consen 105 GTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLA 183 (311)
T ss_pred ceEEEEeccCcccchhcc-CCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEE
Confidence 999999999866666665 78999999999999999999999999999999887665553 3456799999999999999
Q ss_pred EEECCCeEEEEECCCC------ceEEEeeecCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCC-cEEEeeCCCCCCeEE
Q 001462 159 SGGFDNVVKVWDLTAG------KLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETF-ELIGSTRPEVTGVHA 231 (1074)
Q Consensus 159 Sgs~DGsI~VWDl~tg------k~v~~~~~h~g~ItsLafSPdg~lLaTGS~DGtI~IWDl~tg-~~i~t~~~~~~~Its 231 (1074)
.+...|..++|++-.+ +++..++.|.+.+..+.++||+++|++++.|.+++||+..+. +.-..+.+|...+..
T Consensus 184 a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWd 263 (311)
T KOG0315|consen 184 AANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWD 263 (311)
T ss_pred EecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEe
Confidence 9999999999998664 356778899999999999999999999999999999999987 555667888889999
Q ss_pred EEEecCCCEEEEE-ECCcEEEEEecCCeeeeccccCCcee
Q 001462 232 ITFHPDGRTLFSG-FDDNLKVYSWEPVICHDSVDMGWSTL 270 (1074)
Q Consensus 232 IafSPDG~~LasG-sd~~I~Vwd~~s~~~~~~l~~~~s~~ 270 (1074)
++||.||.||++| +|+..++|++..++....+..+....
T Consensus 264 c~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~ 303 (311)
T KOG0315|consen 264 CAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAA 303 (311)
T ss_pred eeeccCccEEEecCCCCceeecccccCceeeecCCccccc
Confidence 9999999999996 56779999999988877776655443
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.1e-27 Score=249.44 Aligned_cols=285 Identities=21% Similarity=0.330 Sum_probs=234.8
Q ss_pred ceEEEEecCCCCEEEEEEecCCCcEEEEEECCCeEEEEECCCC---ceEEEe-eCCCCCeEEEEEcCCCCEEEEEEcCCe
Q 001462 6 YKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKP---TALMSL-CGLSSPVDSVAFDSAEVLVLAGASTGV 81 (1074)
Q Consensus 6 ~~v~~L~gHs~~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~---k~l~sl-~~hs~~ItsLafSpdg~~LatGs~DG~ 81 (1074)
..++.+.+|.+.|..++|+|-.+.+||+|+.|..|+||+...+ .+...+ .+|+..|+.++|+|.|++|++++.|++
T Consensus 5 ~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t 84 (312)
T KOG0645|consen 5 ILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDAT 84 (312)
T ss_pred eeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccce
Confidence 4567889999999999999983379999999999999998743 333333 478999999999999999999999999
Q ss_pred EEEEEcCCC--eeEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC---eEEEEEeCCCCCeEEEEEcCCCCE
Q 001462 82 IKLWDLEES--KMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKK---GCIHTYKGHTRGINTIRFTPDGRW 156 (1074)
Q Consensus 82 I~VWDl~tg--k~i~tl~~h~~~VtsLafSPdg~~LaSgS~DGsI~IWDi~tg---~~v~~l~~h~~~VtsLafSPdG~~ 156 (1074)
+.||.-..+ +++..+.+|...|.+++|+++|++||+++.|+.|.||.+..+ .+...++.|...|..+.|+|...+
T Consensus 85 ~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dl 164 (312)
T KOG0645|consen 85 VVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDL 164 (312)
T ss_pred EEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcce
Confidence 999986644 678899999999999999999999999999999999998744 467788999999999999999999
Q ss_pred EEEEECCCeEEEEECC---CCceEEEeeecCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCCcEEEeeCCCCCCeEEEE
Q 001462 157 VVSGGFDNVVKVWDLT---AGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAIT 233 (1074)
Q Consensus 157 LaSgs~DGsI~VWDl~---tgk~v~~~~~h~g~ItsLafSPdg~lLaTGS~DGtI~IWDl~tg~~i~t~~~~~~~ItsIa 233 (1074)
|++++.|.+|++|+-. ...++.++.+|...|.+++|++.|..|++++.|++++||-..+. .-..|...+..+.
T Consensus 165 L~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~----~~~~~sr~~Y~v~ 240 (312)
T KOG0645|consen 165 LFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTD----LSGMHSRALYDVP 240 (312)
T ss_pred eEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccC----cchhcccceEeee
Confidence 9999999999999866 34678999999999999999999999999999999999986521 1123456788999
Q ss_pred EecCCCEEEE-EECCcEEEEEecCCeeee--------ccccCCceeeEEEecC-CCEEEEEECCCeEEEEEcC
Q 001462 234 FHPDGRTLFS-GFDDNLKVYSWEPVICHD--------SVDMGWSTLGDLCIND-GKLLGCSFYRNSVGIWVAD 296 (1074)
Q Consensus 234 fSPDG~~Las-Gsd~~I~Vwd~~s~~~~~--------~l~~~~s~~~~l~spD-GklLAsgs~DGsV~IWDld 296 (1074)
|. +| .|++ |.|+.|++|.-....... ...+...+....+.|. ..+|++|+.||.|++|.+.
T Consensus 241 W~-~~-~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 241 WD-NG-VIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred ec-cc-ceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 98 54 4555 678889999866321111 1122335556666674 6789999999999999763
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.8e-27 Score=264.34 Aligned_cols=323 Identities=16% Similarity=0.223 Sum_probs=262.2
Q ss_pred EEecCCCCEEEEEEecCCCcEEEEEECCCeEEEEECCCCceEEEee---CCCCCeEEEEEcCCCCEEEEEEcCCeEEEEE
Q 001462 10 EFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLC---GLSSPVDSVAFDSAEVLVLAGASTGVIKLWD 86 (1074)
Q Consensus 10 ~L~gHs~~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~k~l~sl~---~hs~~ItsLafSpdg~~LatGs~DG~I~VWD 86 (1074)
.+..|...|+|+.|+||| .++|+++.||+|.|||=.+++.+..+. .|.+.|++++|+||+..+++++.|.+++|||
T Consensus 185 s~r~HskFV~~VRysPDG-~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWd 263 (603)
T KOG0318|consen 185 SFREHSKFVNCVRYSPDG-SRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWD 263 (603)
T ss_pred cccccccceeeEEECCCC-CeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEE
Confidence 467799999999999998 789999999999999999999999987 8999999999999999999999999999999
Q ss_pred cCCCeeEEEEeCCC---CCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECC
Q 001462 87 LEESKMVRTLTGHK---SNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFD 163 (1074)
Q Consensus 87 l~tgk~i~tl~~h~---~~VtsLafSPdg~~LaSgS~DGsI~IWDi~tg~~v~~l~~h~~~VtsLafSPdG~~LaSgs~D 163 (1074)
+.+.++++++.... ..-..+.|- +..|++.+.+|.|.+++......++.+.+|...|+++..++++++|++|+.|
T Consensus 264 Vs~~slv~t~~~~~~v~dqqvG~lWq--kd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyD 341 (603)
T KOG0318|consen 264 VSTNSLVSTWPMGSTVEDQQVGCLWQ--KDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYD 341 (603)
T ss_pred eeccceEEEeecCCchhceEEEEEEe--CCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccC
Confidence 99999998886432 234455665 6678999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEECCCCceE-----------E--------------------Ee--------------------------------
Q 001462 164 NVVKVWDLTAGKLL-----------H--------------------DF-------------------------------- 180 (1074)
Q Consensus 164 GsI~VWDl~tgk~v-----------~--------------------~~-------------------------------- 180 (1074)
|.|.-||..+|..- . .+
T Consensus 342 G~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~av 421 (603)
T KOG0318|consen 342 GHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAV 421 (603)
T ss_pred ceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEE
Confidence 99999997543210 0 00
Q ss_pred ----------eec--------CCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCCcEE--EeeCCCCCCeEEEEEecCCCE
Q 001462 181 ----------KFH--------EGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELI--GSTRPEVTGVHAITFHPDGRT 240 (1074)
Q Consensus 181 ----------~~h--------~g~ItsLafSPdg~lLaTGS~DGtI~IWDl~tg~~i--~t~~~~~~~ItsIafSPDG~~ 240 (1074)
+.+ .....+++++|++..+++|+.||.|++|.+..+... .....|.+.|++++|+||+.|
T Consensus 422 v~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~y 501 (603)
T KOG0318|consen 422 VACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAY 501 (603)
T ss_pred EEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcE
Confidence 000 012356788999999999999999999999875533 345678899999999999999
Q ss_pred EEEEE-CCcEEEEEecCCeeeecc--ccCCceeeEEEecCCCEEEEEECCCeEEEEEcCCCceeeeecCCCCCCCCceeE
Q 001462 241 LFSGF-DDNLKVYSWEPVICHDSV--DMGWSTLGDLCINDGKLLGCSFYRNSVGIWVADVSHVEPYGVGAPEPDQSICTE 317 (1074)
Q Consensus 241 LasGs-d~~I~Vwd~~s~~~~~~l--~~~~s~~~~l~spDGklLAsgs~DGsV~IWDld~~~l~~~~~~~~~~~~~~Its 317 (1074)
|++|. .+.+.+|+......+... .+...+.+..|+|+..++|+|+-|..|.||+++..... .... ..|...++.
T Consensus 502 la~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~-i~ik--nAH~~gVn~ 578 (603)
T KOG0318|consen 502 LAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKH-IIIK--NAHLGGVNS 578 (603)
T ss_pred EEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhhh-eEec--cccccCcee
Confidence 99984 566999999887663321 23345667788899999999999999999998643332 2221 467777999
Q ss_pred EEEcCCCCcceeEEEEEeccCcceEE
Q 001462 318 VKFNPPGSHSLEKVGIIGRSTSGFRS 343 (1074)
Q Consensus 318 VaFSPDGs~~Lv~vlavG~stG~~r~ 343 (1074)
|.|--+.. ++..|+....-.|
T Consensus 579 v~wlde~t-----vvSsG~Da~iK~W 599 (603)
T KOG0318|consen 579 VAWLDEST-----VVSSGQDANIKVW 599 (603)
T ss_pred EEEecCce-----EEeccCcceeEEe
Confidence 99988666 6666666543333
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.5e-28 Score=258.38 Aligned_cols=285 Identities=22% Similarity=0.363 Sum_probs=248.1
Q ss_pred eEEEEecCCCCEEEEEEecCCCcEEEEEECCCeEEEEEC-CCCceEEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEE
Q 001462 7 KLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAI-GKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLW 85 (1074)
Q Consensus 7 ~v~~L~gHs~~Vt~IafSPdg~~lLaTGs~DGtV~IWDl-~t~k~l~sl~~hs~~ItsLafSpdg~~LatGs~DG~I~VW 85 (1074)
++..+.+|.+.|+++.|+|+| .+||+|+.|..|.||+. ...+....+++|.+.|..+.|.+|++.|++++.|.+|+.|
T Consensus 39 p~m~l~gh~geI~~~~F~P~g-s~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~w 117 (338)
T KOG0265|consen 39 PIMLLPGHKGEIYTIKFHPDG-SCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGW 117 (338)
T ss_pred hhhhcCCCcceEEEEEECCCC-CeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEE
Confidence 344678999999999999998 89999999999999995 6667788899999999999999999999999999999999
Q ss_pred EcCCCeeEEEEeCCCCCeEEEEEcCCCC-EEEEEECCCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCC
Q 001462 86 DLEESKMVRTLTGHKSNCTAVEFHPFGE-FFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDN 164 (1074)
Q Consensus 86 Dl~tgk~i~tl~~h~~~VtsLafSPdg~-~LaSgS~DGsI~IWDi~tg~~v~~l~~h~~~VtsLafSPdG~~LaSgs~DG 164 (1074)
|+++|+.++.+++|..-|..+.-+.-|. .+.+++.||++++||+++..+++.+. ...+++++.|..++..+++|+-|+
T Consensus 118 D~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqltAv~f~d~s~qv~sggIdn 196 (338)
T KOG0265|consen 118 DAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLTAVGFKDTSDQVISGGIDN 196 (338)
T ss_pred ecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc-cceeEEEEEecccccceeeccccC
Confidence 9999999999999999999998665555 56677889999999999999888886 345799999999999999999999
Q ss_pred eEEEEECCCCceEEEeeecCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCC----cEEEeeCCCCC----CeEEEEEec
Q 001462 165 VVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETF----ELIGSTRPEVT----GVHAITFHP 236 (1074)
Q Consensus 165 sI~VWDl~tgk~v~~~~~h~g~ItsLafSPdg~lLaTGS~DGtI~IWDl~tg----~~i~t~~~~~~----~ItsIafSP 236 (1074)
.|++||++.+...+.+.+|...|+.+..+++|.++.+-+.|.++++||++-+ .++..+.++.. ....++|+|
T Consensus 197 ~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp 276 (338)
T KOG0265|consen 197 DIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSP 276 (338)
T ss_pred ceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccC
Confidence 9999999999999999999999999999999999999999999999999853 34666655432 356789999
Q ss_pred CCCEEEEEE-CCcEEEEEecCCeeeeccccCC-ceeeEEEecCCCEEEEEECCCeEEEE
Q 001462 237 DGRTLFSGF-DDNLKVYSWEPVICHDSVDMGW-STLGDLCINDGKLLGCSFYRNSVGIW 293 (1074)
Q Consensus 237 DG~~LasGs-d~~I~Vwd~~s~~~~~~l~~~~-s~~~~l~spDGklLAsgs~DGsV~IW 293 (1074)
++.++.+|+ |..+++||.....+.-.++.+. .+....|.|...+|.+++.|.+|.+=
T Consensus 277 ~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~lg 335 (338)
T KOG0265|consen 277 NGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYLG 335 (338)
T ss_pred CCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEee
Confidence 999999975 5669999988877766666655 44556667899999999999988763
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.3e-27 Score=278.97 Aligned_cols=306 Identities=23% Similarity=0.441 Sum_probs=264.2
Q ss_pred CceEEEEecCCCCEEEEEEecCCCcEEEEEECCCeEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEE
Q 001462 5 GYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKL 84 (1074)
Q Consensus 5 G~~v~~L~gHs~~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~k~l~sl~~hs~~ItsLafSpdg~~LatGs~DG~I~V 84 (1074)
|.++..|..|.++|..|+|+|.+ .++++||.|..|++|+....+++.++.+|-..|..+.|++.-.+|++++.|-+|+|
T Consensus 41 ~tli~rFdeHdGpVRgv~FH~~q-plFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrI 119 (1202)
T KOG0292|consen 41 GTLIDRFDEHDGPVRGVDFHPTQ-PLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRI 119 (1202)
T ss_pred hhHHhhhhccCCccceeeecCCC-CeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEE
Confidence 44677899999999999999998 79999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCeeEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC--------C-------------------e--EE
Q 001462 85 WDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRK--------K-------------------G--CI 135 (1074)
Q Consensus 85 WDl~tgk~i~tl~~h~~~VtsLafSPdg~~LaSgS~DGsI~IWDi~t--------g-------------------~--~v 135 (1074)
|+|++++++..+.+|...|.|..|+|....+++++.|.+|++||+.. + . ..
T Consensus 120 WNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK 199 (1202)
T KOG0292|consen 120 WNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVK 199 (1202)
T ss_pred EeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeee
Confidence 99999999999999999999999999999999999999999999852 1 0 12
Q ss_pred EEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCce--EEEeeecCCCeEEEEEcCCCcEEEEEeCCCeEEEEEC
Q 001462 136 HTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKL--LHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDL 213 (1074)
Q Consensus 136 ~~l~~h~~~VtsLafSPdG~~LaSgs~DGsI~VWDl~tgk~--v~~~~~h~g~ItsLafSPdg~lLaTGS~DGtI~IWDl 213 (1074)
+.+.+|..+|..++|+|.-.+|++|+.|..|++|.+...+. +.+..+|...|.++-|+|..+++++.+.|++|++||+
T Consensus 200 ~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm 279 (1202)
T KOG0292|consen 200 HVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDM 279 (1202)
T ss_pred eeecccccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEec
Confidence 45678999999999999999999999999999999865542 4456789999999999999999999999999999999
Q ss_pred CCCcEEEeeCCCCCCeEEEEEecCCCEEEEEECCcEEEEEecCCeeeeccccCCceeeEEEecCCCEEEEEECCCeEEEE
Q 001462 214 ETFELIGSTRPEVTGVHAITFHPDGRTLFSGFDDNLKVYSWEPVICHDSVDMGWSTLGDLCINDGKLLGCSFYRNSVGIW 293 (1074)
Q Consensus 214 ~tg~~i~t~~~~~~~ItsIafSPDG~~LasGsd~~I~Vwd~~s~~~~~~l~~~~s~~~~l~spDGklLAsgs~DGsV~IW 293 (1074)
...+.+.++....+..+.++.+|..+++++|.|+++.||.++.... ..+.+++.++.. .|..|+.+
T Consensus 280 ~kRt~v~tfrrendRFW~laahP~lNLfAAgHDsGm~VFkleRErp------------a~~v~~n~LfYv--kd~~i~~~ 345 (1202)
T KOG0292|consen 280 TKRTSVQTFRRENDRFWILAAHPELNLFAAGHDSGMIVFKLERERP------------AYAVNGNGLFYV--KDRFIRSY 345 (1202)
T ss_pred ccccceeeeeccCCeEEEEEecCCcceeeeecCCceEEEEEcccCc------------eEEEcCCEEEEE--ccceEEee
Confidence 9999999999888999999999999999999999999999874322 123344444443 38899999
Q ss_pred EcCCCceeeee-cCCCCCCCCceeEEEEcCCCC
Q 001462 294 VADVSHVEPYG-VGAPEPDQSICTEVKFNPPGS 325 (1074)
Q Consensus 294 Dld~~~l~~~~-~~~~~~~~~~ItsVaFSPDGs 325 (1074)
|+.+..-.++. +..+.....++.++.|+|-.+
T Consensus 346 d~~t~~d~~v~~lr~~g~~~~~~~smsYNpae~ 378 (1202)
T KOG0292|consen 346 DLRTQKDTAVASLRRPGTLWQPPRSLSYNPAEN 378 (1202)
T ss_pred eccccccceeEeccCCCcccCCcceeeeccccC
Confidence 98764443333 222222357788999999777
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.8e-27 Score=277.45 Aligned_cols=328 Identities=24% Similarity=0.432 Sum_probs=270.6
Q ss_pred ccCceEEEEecCCCCEEEEEEecCCCc-EEEEEECCCeEEEEECCCCce-EEEeeCCCCCeEEEEEcCCCCEEEEEEcCC
Q 001462 3 KRGYKLQEFVAHSANVNCISIGKKACR-FLITGGDDQKVNLWAIGKPTA-LMSLCGLSSPVDSVAFDSAEVLVLAGASTG 80 (1074)
Q Consensus 3 ktG~~v~~L~gHs~~Vt~IafSPdg~~-lLaTGs~DGtV~IWDl~t~k~-l~sl~~hs~~ItsLafSpdg~~LatGs~DG 80 (1074)
+.+++.+.|.||.+.|.++.|+|+-.+ +|++|..|+.+++||+.+... +..+..|...|++++|++|+..+++++.|.
T Consensus 135 ~~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDk 214 (775)
T KOG0319|consen 135 KNGYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDK 214 (775)
T ss_pred eCCEEEEEecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEeccCc
Confidence 467889999999999999999998633 578999999999999985544 777889999999999999998888888888
Q ss_pred eEEEEEcCCCee--------------------------E-----------------------------------------
Q 001462 81 VIKLWDLEESKM--------------------------V----------------------------------------- 93 (1074)
Q Consensus 81 ~I~VWDl~tgk~--------------------------i----------------------------------------- 93 (1074)
.+.|||+.+.+. +
T Consensus 215 vi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~ 294 (775)
T KOG0319|consen 215 VIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMS 294 (775)
T ss_pred EEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccC
Confidence 888888732100 0
Q ss_pred ----------------------------------------------------------------EEEeCCCCCeEEEEEc
Q 001462 94 ----------------------------------------------------------------RTLTGHKSNCTAVEFH 109 (1074)
Q Consensus 94 ----------------------------------------------------------------~tl~~h~~~VtsLafS 109 (1074)
..+.+|.+.|.++...
T Consensus 295 ~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~ 374 (775)
T KOG0319|consen 295 QLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVW 374 (775)
T ss_pred ceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeec
Confidence 1123556666666644
Q ss_pred CCCCEEEEEECCCeEEEEECCCCe----EEEEEeCCCCCeEEEEEcCCC-CEEEEEECCCeEEEEECCCCc-----eEE-
Q 001462 110 PFGEFFASGCMDTNLKIWDIRKKG----CIHTYKGHTRGINTIRFTPDG-RWVVSGGFDNVVKVWDLTAGK-----LLH- 178 (1074)
Q Consensus 110 Pdg~~LaSgS~DGsI~IWDi~tg~----~v~~l~~h~~~VtsLafSPdG-~~LaSgs~DGsI~VWDl~tgk-----~v~- 178 (1074)
.+|.+|++|+.|.++++|.++.+. ++....+|...|.+++++..+ .+|++++.|++|++|++...+ .+.
T Consensus 375 ~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~ 454 (775)
T KOG0319|consen 375 SSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLT 454 (775)
T ss_pred ccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceeh
Confidence 567789999999999999774332 455667899999999997754 478999999999999997622 111
Q ss_pred ---EeeecCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCCcEEEeeCCCCCCeEEEEEecCCCEEEEE-ECCcEEEEEe
Q 001462 179 ---DFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSG-FDDNLKVYSW 254 (1074)
Q Consensus 179 ---~~~~h~g~ItsLafSPdg~lLaTGS~DGtI~IWDl~tg~~i~t~~~~~~~ItsIafSPDG~~LasG-sd~~I~Vwd~ 254 (1074)
....|+..|++++++|+.+++++|+.|.+.+||++........+.+|.-++.++.|++..+.++++ +|.+++||.+
T Consensus 455 ~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~i 534 (775)
T KOG0319|consen 455 CRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSI 534 (775)
T ss_pred hhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEe
Confidence 234699999999999999999999999999999999999999999999999999999999999986 5778999999
Q ss_pred cCCeeeecccc-CCceeeEEEecCCCEEEEEECCCeEEEEEcCCCceeeeecCCCCCCCCceeEEEEcCCCCcceeEEEE
Q 001462 255 EPVICHDSVDM-GWSTLGDLCINDGKLLGCSFYRNSVGIWVADVSHVEPYGVGAPEPDQSICTEVKFNPPGSHSLEKVGI 333 (1074)
Q Consensus 255 ~s~~~~~~l~~-~~s~~~~l~spDGklLAsgs~DGsV~IWDld~~~l~~~~~~~~~~~~~~ItsVaFSPDGs~~Lv~vla 333 (1074)
+++.|...+.. ...++.+.|..+|+.|++++.||-|+||++.++...... +.|.+.|-.+.-+|++. ...
T Consensus 535 s~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tl----D~H~DrvWaL~~~~~~~-----~~~ 605 (775)
T KOG0319|consen 535 STFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTL----DAHNDRVWALSVSPLLD-----MFV 605 (775)
T ss_pred ccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhh----hhccceeEEEeecCccc-----eeE
Confidence 99999999984 456677788899999999999999999999877654433 78999999999999988 556
Q ss_pred EeccCc
Q 001462 334 IGRSTS 339 (1074)
Q Consensus 334 vG~stG 339 (1074)
.|..+|
T Consensus 606 tgg~Dg 611 (775)
T KOG0319|consen 606 TGGGDG 611 (775)
T ss_pred ecCCCe
Confidence 666666
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.5e-27 Score=257.75 Aligned_cols=275 Identities=25% Similarity=0.379 Sum_probs=247.3
Q ss_pred EEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeeEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC
Q 001462 51 LMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIR 130 (1074)
Q Consensus 51 l~sl~~hs~~ItsLafSpdg~~LatGs~DG~I~VWDl~tgk~i~tl~~h~~~VtsLafSPdg~~LaSgS~DGsI~IWDi~ 130 (1074)
...+.+|.+-|.|+++.|.+.+|++|+.|++|.|||+.+|++..++.+|...|..+++++-..|+++++.|+.|+.||+.
T Consensus 144 ~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe 223 (460)
T KOG0285|consen 144 YRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLE 223 (460)
T ss_pred hhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEech
Confidence 44567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeeecCCCeEEEEEcCCCcEEEEEeCCCeEEE
Q 001462 131 KKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKF 210 (1074)
Q Consensus 131 tg~~v~~l~~h~~~VtsLafSPdG~~LaSgs~DGsI~VWDl~tgk~v~~~~~h~g~ItsLafSPdg~lLaTGS~DGtI~I 210 (1074)
..+.+..+.+|-..|+|++.+|.-..|++|+.|..+++||+++...+..+.+|..+|..+.+.|-...+++|+.|++|++
T Consensus 224 ~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrl 303 (460)
T KOG0285|consen 224 YNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRL 303 (460)
T ss_pred hhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCceEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999998889999999999999
Q ss_pred EECCCCcEEEeeCCCCCCeEEEEEecCCCEEEEEECCcEEEEEecCCeeeeccccCCceeeEEEecCCCEEEEEECCCeE
Q 001462 211 WDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGFDDNLKVYSWEPVICHDSVDMGWSTLGDLCINDGKLLGCSFYRNSV 290 (1074)
Q Consensus 211 WDl~tg~~i~t~~~~~~~ItsIafSPDG~~LasGsd~~I~Vwd~~s~~~~~~l~~~~s~~~~l~spDGklLAsgs~DGsV 290 (1074)
||+..|+....+..|...+.+++.+|....+++++.+.|+-|++..+.....+..+..++..+......++++|+.+|.+
T Consensus 304 WDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dnik~w~~p~g~f~~nlsgh~~iintl~~nsD~v~~~G~dng~~ 383 (460)
T KOG0285|consen 304 WDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDNIKQWKLPEGEFLQNLSGHNAIINTLSVNSDGVLVSGGDNGSI 383 (460)
T ss_pred eeeccCceeEeeecccceeeEEecCCchhhhhccCCccceeccCCccchhhccccccceeeeeeeccCceEEEcCCceEE
Confidence 99999999999999999999999999999999999999999999998888888888888888888888889999999999
Q ss_pred EEEEcCCCceeeeecCCCCC----CCCceeEEEEcCCCC
Q 001462 291 GIWVADVSHVEPYGVGAPEP----DQSICTEVKFNPPGS 325 (1074)
Q Consensus 291 ~IWDld~~~l~~~~~~~~~~----~~~~ItsVaFSPDGs 325 (1074)
.+||...+..-+.......+ ....|.+.+|-..|.
T Consensus 384 ~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~ 422 (460)
T KOG0285|consen 384 MFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGS 422 (460)
T ss_pred EEEecCcCcccccccccccCCccccccceeEEeecccCc
Confidence 99998766543332111111 134456666666666
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.7e-27 Score=268.35 Aligned_cols=282 Identities=20% Similarity=0.397 Sum_probs=257.1
Q ss_pred EEecCCCCEEEEEEecCCCcEEEEEECCCeEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCC
Q 001462 10 EFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEE 89 (1074)
Q Consensus 10 ~L~gHs~~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~k~l~sl~~hs~~ItsLafSpdg~~LatGs~DG~I~VWDl~t 89 (1074)
.|..|+..|.||.|||.. .+++++-.+|.|.||+.++...+..+.-...+|.+..|-...+++++|+.|..|+||+..+
T Consensus 8 k~~~rSdRVKsVd~HPte-Pw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt 86 (794)
T KOG0276|consen 8 KFQSRSDRVKSVDFHPTE-PWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNT 86 (794)
T ss_pred HhhccCCceeeeecCCCC-ceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEeccc
Confidence 456699999999999998 7888999999999999999999999998899999999999999999999999999999999
Q ss_pred CeeEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC-eEEEEEeCCCCCeEEEEEcC-CCCEEEEEECCCeEE
Q 001462 90 SKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKK-GCIHTYKGHTRGINTIRFTP-DGRWVVSGGFDNVVK 167 (1074)
Q Consensus 90 gk~i~tl~~h~~~VtsLafSPdg~~LaSgS~DGsI~IWDi~tg-~~v~~l~~h~~~VtsLafSP-dG~~LaSgs~DGsI~ 167 (1074)
++.+..+..|.+.|.+++.||...++++++.|-.|++||.+.+ .+.+.+.+|...|.+++|.| |.+.|++++.|++|+
T Consensus 87 ~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVK 166 (794)
T KOG0276|consen 87 GEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVK 166 (794)
T ss_pred ceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEE
Confidence 9999999999999999999999999999999999999999764 57889999999999999999 677999999999999
Q ss_pred EEECCCCceEEEeeecCCCeEEEEEcCCC--cEEEEEeCCCeEEEEECCCCcEEEeeCCCCCCeEEEEEecCCCEEEEEE
Q 001462 168 VWDLTAGKLLHDFKFHEGHIRSIDFHPLE--FLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGF 245 (1074)
Q Consensus 168 VWDl~tgk~v~~~~~h~g~ItsLafSPdg--~lLaTGS~DGtI~IWDl~tg~~i~t~~~~~~~ItsIafSPDG~~LasGs 245 (1074)
+|.+.+..+..++++|...|.|++|-+.| .+|++|+.|.+|+|||..+..++.++.+|...|..+.|+|.-.++++|+
T Consensus 167 VWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgs 246 (794)
T KOG0276|consen 167 VWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGS 246 (794)
T ss_pred EEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEec
Confidence 99999999999999999999999998854 6999999999999999999999999999999999999999999999986
Q ss_pred -CCcEEEEEecCCeeeeccccCCceeeEEEe-cCCCEEEEEECCCeEEE
Q 001462 246 -DDNLKVYSWEPVICHDSVDMGWSTLGDLCI-NDGKLLGCSFYRNSVGI 292 (1074)
Q Consensus 246 -d~~I~Vwd~~s~~~~~~l~~~~s~~~~l~s-pDGklLAsgs~DGsV~I 292 (1074)
||+++||+-.+......+..+.....++.. ..++.++.|...|.|.|
T Consensus 247 EDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~v 295 (794)
T KOG0276|consen 247 EDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVTV 295 (794)
T ss_pred CCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEEE
Confidence 567999999998888888777666655554 56667888876665544
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.5e-27 Score=260.57 Aligned_cols=250 Identities=25% Similarity=0.458 Sum_probs=235.9
Q ss_pred ccCceEEEEecCCCCEEEEEEecCCCcEEEEEECCCeEEEEECCC-CceEEEeeCCCCCeEEEEEcCCCCEEEEEEcCCe
Q 001462 3 KRGYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGK-PTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGV 81 (1074)
Q Consensus 3 ktG~~v~~L~gHs~~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t-~k~l~sl~~hs~~ItsLafSpdg~~LatGs~DG~ 81 (1074)
.+|+..+.++||++.|..|+|+..| ++|++++.|-.+++||+.+ .+++..+.+|...|.++.|-|.|.+|++++.|.+
T Consensus 138 ~tg~~e~~LrGHt~sv~di~~~a~G-k~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~t 216 (406)
T KOG0295|consen 138 ETGELERSLRGHTDSVFDISFDASG-KYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNT 216 (406)
T ss_pred cchhhhhhhhccccceeEEEEecCc-cEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccc
Confidence 4677788899999999999999999 9999999999999999976 6677888999999999999999999999999999
Q ss_pred EEEEEcCCCeeEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCC--------
Q 001462 82 IKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPD-------- 153 (1074)
Q Consensus 82 I~VWDl~tgk~i~tl~~h~~~VtsLafSPdg~~LaSgS~DGsI~IWDi~tg~~v~~l~~h~~~VtsLafSPd-------- 153 (1074)
|+.|++.+|-++.++.+|...|..+..+.||..+++++.|.+|++|-+.++.+...+..|..+|.|++|-|.
T Consensus 217 ik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~ 296 (406)
T KOG0295|consen 217 IKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISE 296 (406)
T ss_pred eeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999763
Q ss_pred -------CCEEEEEECCCeEEEEECCCCceEEEeeecCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCCcEEEeeCCCC
Q 001462 154 -------GRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEV 226 (1074)
Q Consensus 154 -------G~~LaSgs~DGsI~VWDl~tgk~v~~~~~h~g~ItsLafSPdg~lLaTGS~DGtI~IWDl~tg~~i~t~~~~~ 226 (1074)
+.++.+++.|++|++||+.+|.++.++.+|...|..++|+|.|+||+++..|+++++||++++++...+..|.
T Consensus 297 at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~ 376 (406)
T KOG0295|consen 297 ATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHE 376 (406)
T ss_pred ccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCc
Confidence 2589999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEecCCCEEEEEE-CCcEEEEE
Q 001462 227 TGVHAITFHPDGRTLFSGF-DDNLKVYS 253 (1074)
Q Consensus 227 ~~ItsIafSPDG~~LasGs-d~~I~Vwd 253 (1074)
.-++++.|+.+..++++|+ +..+++|.
T Consensus 377 hfvt~lDfh~~~p~VvTGsVdqt~KvwE 404 (406)
T KOG0295|consen 377 HFVTSLDFHKTAPYVVTGSVDQTVKVWE 404 (406)
T ss_pred ceeEEEecCCCCceEEeccccceeeeee
Confidence 9999999999999999985 56688885
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.9e-28 Score=265.53 Aligned_cols=279 Identities=22% Similarity=0.369 Sum_probs=236.0
Q ss_pred CCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeeEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEE
Q 001462 57 LSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIH 136 (1074)
Q Consensus 57 hs~~ItsLafSpdg~~LatGs~DG~I~VWDl~tgk~i~tl~~h~~~VtsLafSPdg~~LaSgS~DGsI~IWDi~tg~~v~ 136 (1074)
...+|..+.|.|+|+.|++|+..|.+.+|+...-..-..++.|...|.++.|+++|.++++|+.+|.|++|+..... ++
T Consensus 95 vkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnn-Vk 173 (464)
T KOG0284|consen 95 VKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNN-VK 173 (464)
T ss_pred cccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhh-hH
Confidence 45689999999999999999999999999975444444557899999999999999999999999999999975444 44
Q ss_pred EEeCC-CCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeeecCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCC
Q 001462 137 TYKGH-TRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLET 215 (1074)
Q Consensus 137 ~l~~h-~~~VtsLafSPdG~~LaSgs~DGsI~VWDl~tgk~v~~~~~h~g~ItsLafSPdg~lLaTGS~DGtI~IWDl~t 215 (1074)
.+++| ...|++++|+|+...|++++.||.|+|||....+....+.+|...|.+++|+|...+|++|+.|..|++||.++
T Consensus 174 ~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprS 253 (464)
T KOG0284|consen 174 IIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRS 253 (464)
T ss_pred HhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCC
Confidence 55544 48999999999888999999999999999999999889999999999999999999999999999999999999
Q ss_pred CcEEEeeCCCCCCeEEEEEecCCCEEEEEE-CCcEEEEEecCCeeeeccccC-CceeeEEEec-CCCEEEEEECCCeEEE
Q 001462 216 FELIGSTRPEVTGVHAITFHPDGRTLFSGF-DDNLKVYSWEPVICHDSVDMG-WSTLGDLCIN-DGKLLGCSFYRNSVGI 292 (1074)
Q Consensus 216 g~~i~t~~~~~~~ItsIafSPDG~~LasGs-d~~I~Vwd~~s~~~~~~l~~~-~s~~~~l~sp-DGklLAsgs~DGsV~I 292 (1074)
+.++.++..|...|..+.|.+++.+|++++ |..+++||++..+....+..+ .......|.| ...+|.+|++||.|..
T Consensus 254 g~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh 333 (464)
T KOG0284|consen 254 GSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVH 333 (464)
T ss_pred cchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceEE
Confidence 999999999999999999999999999976 556999999976666666543 3444555565 6678999999999999
Q ss_pred EEcCCCceeeeecCCCCCCCCceeEEEEcCCCCcceeEEEEEeccCcceEEe
Q 001462 293 WVADVSHVEPYGVGAPEPDQSICTEVKFNPPGSHSLEKVGIIGRSTSGFRST 344 (1074)
Q Consensus 293 WDld~~~l~~~~~~~~~~~~~~ItsVaFSPDGs~~Lv~vlavG~stG~~r~i 344 (1074)
|.+. ..+++. ..+..|...|.+++|+|-|- +++.|...-..++.
T Consensus 334 ~~v~--~~~p~~-~i~~AHd~~iwsl~~hPlGh-----il~tgsnd~t~rfw 377 (464)
T KOG0284|consen 334 WVVG--LEEPLG-EIPPAHDGEIWSLAYHPLGH-----ILATGSNDRTVRFW 377 (464)
T ss_pred Eecc--cccccc-CCCcccccceeeeeccccce-----eEeecCCCcceeee
Confidence 9987 233333 23478899999999999888 77776665444443
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.2e-26 Score=248.70 Aligned_cols=270 Identities=20% Similarity=0.335 Sum_probs=235.4
Q ss_pred EEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcC-CCeeEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEC
Q 001462 51 LMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLE-ESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDI 129 (1074)
Q Consensus 51 l~sl~~hs~~ItsLafSpdg~~LatGs~DG~I~VWDl~-tgk~i~tl~~h~~~VtsLafSPdg~~LaSgS~DGsI~IWDi 129 (1074)
+..+.+|.+.|+.+.|+|+|.+|++|+.|..|.+|++. +.+-...+++|.+.|..+.|.+|++.+++++.|.+|+.||.
T Consensus 40 ~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~ 119 (338)
T KOG0265|consen 40 IMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDA 119 (338)
T ss_pred hhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEec
Confidence 44567999999999999999999999999999999954 45567788899999999999999999999999999999999
Q ss_pred CCCeEEEEEeCCCCCeEEEEEcCCCC-EEEEEECCCeEEEEECCCCceEEEeeecCCCeEEEEEcCCCcEEEEEeCCCeE
Q 001462 130 RKKGCIHTYKGHTRGINTIRFTPDGR-WVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTV 208 (1074)
Q Consensus 130 ~tg~~v~~l~~h~~~VtsLafSPdG~-~LaSgs~DGsI~VWDl~tgk~v~~~~~h~g~ItsLafSPdg~lLaTGS~DGtI 208 (1074)
++|+.+..+++|...|..+.-+.-|. ++.+|+.||++++||+++...++.+. ....++++.|...+..+++|+-|+.|
T Consensus 120 ~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqltAv~f~d~s~qv~sggIdn~i 198 (338)
T KOG0265|consen 120 ETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLTAVGFKDTSDQVISGGIDNDI 198 (338)
T ss_pred ccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc-cceeEEEEEecccccceeeccccCce
Confidence 99999999999999999888554454 55678889999999999988888776 35679999999999999999999999
Q ss_pred EEEECCCCcEEEeeCCCCCCeEEEEEecCCCEEEE-EECCcEEEEEecCCe----eeeccc-----cCCceeeEEEecCC
Q 001462 209 KFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFS-GFDDNLKVYSWEPVI----CHDSVD-----MGWSTLGDLCINDG 278 (1074)
Q Consensus 209 ~IWDl~tg~~i~t~~~~~~~ItsIafSPDG~~Las-Gsd~~I~Vwd~~s~~----~~~~l~-----~~~s~~~~l~spDG 278 (1074)
++||++..+....+.+|...|+.+..+++|.++.+ +.|+.+++||+.+.. ++..+. .....+.+.|+|++
T Consensus 199 kvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~ 278 (338)
T KOG0265|consen 199 KVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNG 278 (338)
T ss_pred eeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCC
Confidence 99999999999999999999999999999999998 678899999998643 233332 22345677888999
Q ss_pred CEEEEEECCCeEEEEEcCCCceeeeecCCCCCCCCceeEEEEcCCCC
Q 001462 279 KLLGCSFYRNSVGIWVADVSHVEPYGVGAPEPDQSICTEVKFNPPGS 325 (1074)
Q Consensus 279 klLAsgs~DGsV~IWDld~~~l~~~~~~~~~~~~~~ItsVaFSPDGs 325 (1074)
..+.+|+.|..+++||.......... .+|.+.|.+++|+|...
T Consensus 279 ~~i~ags~dr~vyvwd~~~r~~lykl----pGh~gsvn~~~Fhp~e~ 321 (338)
T KOG0265|consen 279 TKITAGSADRFVYVWDTTSRRILYKL----PGHYGSVNEVDFHPTEP 321 (338)
T ss_pred CccccccccceEEEeecccccEEEEc----CCcceeEEEeeecCCCc
Confidence 99999999999999998754443332 68999999999999888
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.2e-26 Score=270.75 Aligned_cols=285 Identities=23% Similarity=0.428 Sum_probs=254.4
Q ss_pred EEecCCCCEEEEEEecCCCcEEEEEECCCeEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCC
Q 001462 10 EFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEE 89 (1074)
Q Consensus 10 ~L~gHs~~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~k~l~sl~~hs~~ItsLafSpdg~~LatGs~DG~I~VWDl~t 89 (1074)
.|...+..|..++|+|.. .+++++-..|.|.+||..-+..+..+..|.++|..++|+|.+.++++||.|..|+||+...
T Consensus 4 kfEskSsRvKglsFHP~r-PwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~ 82 (1202)
T KOG0292|consen 4 KFESKSSRVKGLSFHPKR-PWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKT 82 (1202)
T ss_pred hhhcccccccceecCCCC-CEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEeccc
Confidence 355667889999999998 7899999999999999999999999999999999999999999999999999999999999
Q ss_pred CeeEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEE
Q 001462 90 SKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVW 169 (1074)
Q Consensus 90 gk~i~tl~~h~~~VtsLafSPdg~~LaSgS~DGsI~IWDi~tg~~v~~l~~h~~~VtsLafSPdG~~LaSgs~DGsI~VW 169 (1074)
.+++.++.+|-+.|..+.|++.-.+|++++.|.+|+||++.+++++..+.+|...|.|..|+|....+++++.|.+|++|
T Consensus 83 rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVW 162 (1202)
T KOG0292|consen 83 RRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVW 162 (1202)
T ss_pred ceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ECCC--------C-------------------c--eEEEeeecCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCCc--E
Q 001462 170 DLTA--------G-------------------K--LLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFE--L 218 (1074)
Q Consensus 170 Dl~t--------g-------------------k--~v~~~~~h~g~ItsLafSPdg~lLaTGS~DGtI~IWDl~tg~--~ 218 (1074)
|+.. + . ..+.+.+|+..|.-++|+|.-.++++|+.|..|++|.+...+ .
T Consensus 163 DisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWE 242 (1202)
T KOG0292|consen 163 DISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWE 242 (1202)
T ss_pred eecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEecccccee
Confidence 9842 1 0 124467899999999999999999999999999999987544 3
Q ss_pred EEeeCCCCCCeEEEEEecCCCEEEE-EECCcEEEEEecCCeeeeccccCCceeeEEEe-cCCCEEEEEECCCeEEEEEcC
Q 001462 219 IGSTRPEVTGVHAITFHPDGRTLFS-GFDDNLKVYSWEPVICHDSVDMGWSTLGDLCI-NDGKLLGCSFYRNSVGIWVAD 296 (1074)
Q Consensus 219 i~t~~~~~~~ItsIafSPDG~~Las-Gsd~~I~Vwd~~s~~~~~~l~~~~s~~~~l~s-pDGklLAsgs~DGsV~IWDld 296 (1074)
+-+..+|...|.++.|+|...++++ |-|+.|+|||+.....+..+......++.+.. |..+++|+| .|+.+.||.++
T Consensus 243 vDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP~lNLfAAg-HDsGm~VFkle 321 (1202)
T KOG0292|consen 243 VDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFAAG-HDSGMIVFKLE 321 (1202)
T ss_pred ehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeeeccCCeEEEEEecCCcceeeee-cCCceEEEEEc
Confidence 4567889999999999998888887 56777999999999988888666666555554 688888877 67778888876
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.8e-25 Score=281.02 Aligned_cols=300 Identities=19% Similarity=0.234 Sum_probs=235.1
Q ss_pred CCeEEEEECCCCceEEE-----eeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCC----e----eEEEEeCCCCCe
Q 001462 37 DQKVNLWAIGKPTALMS-----LCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEES----K----MVRTLTGHKSNC 103 (1074)
Q Consensus 37 DGtV~IWDl~t~k~l~s-----l~~hs~~ItsLafSpdg~~LatGs~DG~I~VWDl~tg----k----~i~tl~~h~~~V 103 (1074)
+|.+++|+......... +..|...|.+++|+++|.+|++|+.||.|+||++... . ....+. +...+
T Consensus 457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v 535 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKL 535 (793)
T ss_pred hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCce
Confidence 67788888866554333 3458899999999999999999999999999997532 1 122333 35678
Q ss_pred EEEEEcCC-CCEEEEEECCCeEEEEECCCCeEEEEEeCCCCCeEEEEEcC-CCCEEEEEECCCeEEEEECCCCceEEEee
Q 001462 104 TAVEFHPF-GEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTP-DGRWVVSGGFDNVVKVWDLTAGKLLHDFK 181 (1074)
Q Consensus 104 tsLafSPd-g~~LaSgS~DGsI~IWDi~tg~~v~~l~~h~~~VtsLafSP-dG~~LaSgs~DGsI~VWDl~tgk~v~~~~ 181 (1074)
.+++|++. +.+|++++.||.|++||+.+++.+..+.+|...|++++|+| ++.+|++|+.||.|++||+.++..+..+.
T Consensus 536 ~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~ 615 (793)
T PLN00181 536 SGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIK 615 (793)
T ss_pred eeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEe
Confidence 99999874 78999999999999999999999999999999999999997 78899999999999999999999888887
Q ss_pred ecCCCeEEEEEc-CCCcEEEEEeCCCeEEEEECCCCc-EEEeeCCCCCCeEEEEEecCCCEEEEE-ECCcEEEEEecCC-
Q 001462 182 FHEGHIRSIDFH-PLEFLLATGSADRTVKFWDLETFE-LIGSTRPEVTGVHAITFHPDGRTLFSG-FDDNLKVYSWEPV- 257 (1074)
Q Consensus 182 ~h~g~ItsLafS-Pdg~lLaTGS~DGtI~IWDl~tg~-~i~t~~~~~~~ItsIafSPDG~~LasG-sd~~I~Vwd~~s~- 257 (1074)
.+ ..+.++.|+ +++.+|++|+.||.|++||+++.. .+..+.+|...|.++.|. ++.+|+++ .|+.|++||+...
T Consensus 616 ~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~ 693 (793)
T PLN00181 616 TK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSI 693 (793)
T ss_pred cC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCc
Confidence 54 678999995 579999999999999999998765 466778898999999997 56677765 5778999998742
Q ss_pred -----eeeeccccCC-ceeeEEEecCCCEEEEEECCCeEEEEEcCCCcee-eeecC--------CCCCCCCceeEEEEcC
Q 001462 258 -----ICHDSVDMGW-STLGDLCINDGKLLGCSFYRNSVGIWVADVSHVE-PYGVG--------APEPDQSICTEVKFNP 322 (1074)
Q Consensus 258 -----~~~~~l~~~~-s~~~~l~spDGklLAsgs~DGsV~IWDld~~~l~-~~~~~--------~~~~~~~~ItsVaFSP 322 (1074)
.....+..+. ......+.+++.+|++|+.||.|.||+....... .+... ....+...|.+++|+|
T Consensus 694 ~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~ 773 (793)
T PLN00181 694 SGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRG 773 (793)
T ss_pred cccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcC
Confidence 2233333322 2334556789999999999999999997543211 11110 0123456799999999
Q ss_pred CCCcceeEEEEEeccCcceEEe
Q 001462 323 PGSHSLEKVGIIGRSTSGFRST 344 (1074)
Q Consensus 323 DGs~~Lv~vlavG~stG~~r~i 344 (1074)
+|. .++.|...|.++++
T Consensus 774 ~~~-----~lva~~~dG~I~i~ 790 (793)
T PLN00181 774 QSS-----TLVAANSTGNIKIL 790 (793)
T ss_pred CCC-----eEEEecCCCcEEEE
Confidence 999 67777777755544
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.2e-28 Score=275.32 Aligned_cols=312 Identities=19% Similarity=0.271 Sum_probs=271.1
Q ss_pred EEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeeEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC
Q 001462 52 MSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRK 131 (1074)
Q Consensus 52 ~sl~~hs~~ItsLafSpdg~~LatGs~DG~I~VWDl~tgk~i~tl~~h~~~VtsLafSPdg~~LaSgS~DGsI~IWDi~t 131 (1074)
..+.-...+.+.+.|+.+|++|+.|+..|+|..+||.++++...+. -...|.++.|..+.++||++ ....++||| ..
T Consensus 123 f~L~l~eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~-v~Etv~Dv~~LHneq~~AVA-QK~y~yvYD-~~ 199 (545)
T KOG1272|consen 123 FDLSLPEFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEIN-VMETVRDVTFLHNEQFFAVA-QKKYVYVYD-NN 199 (545)
T ss_pred ccccccccCCeeeeecCCccEEEecCCccceeeeecccceeeeeee-hhhhhhhhhhhcchHHHHhh-hhceEEEec-CC
Confidence 3344335567889999999999999999999999999999998886 57789999999999999987 678899999 67
Q ss_pred CeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeeecCCCeEEEEEcCCCcEEEEEeCCCeEEEE
Q 001462 132 KGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFW 211 (1074)
Q Consensus 132 g~~v~~l~~h~~~VtsLafSPdG~~LaSgs~DGsI~VWDl~tgk~v~~~~~h~g~ItsLafSPdg~lLaTGS~DGtI~IW 211 (1074)
|..++.++.+. .|..+.|.|...+|++++..|.+...|+.+|+++..+....+.+..++-+|....+.+|..+|+|.+|
T Consensus 200 GtElHClk~~~-~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlW 278 (545)
T KOG1272|consen 200 GTELHCLKRHI-RVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLW 278 (545)
T ss_pred CcEEeehhhcC-chhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEec
Confidence 88999998664 58999999999999999999999999999999999999889999999999999999999999999999
Q ss_pred ECCCCcEEEeeCCCCCCeEEEEEecCCCEEEE-EECCcEEEEEecCCeeeeccccCCceeeEEEecCCCEEEEEECCCeE
Q 001462 212 DLETFELIGSTRPEVTGVHAITFHPDGRTLFS-GFDDNLKVYSWEPVICHDSVDMGWSTLGDLCINDGKLLGCSFYRNSV 290 (1074)
Q Consensus 212 Dl~tg~~i~t~~~~~~~ItsIafSPDG~~Las-Gsd~~I~Vwd~~s~~~~~~l~~~~s~~~~l~spDGklLAsgs~DGsV 290 (1074)
.....+++..+..|.++|.+|++.++|+|+++ |.|..++|||++.......+... .+...+.+++..+||++ .+..|
T Consensus 279 SP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp-~~a~~ls~SqkglLA~~-~G~~v 356 (545)
T KOG1272|consen 279 SPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTP-HPASNLSLSQKGLLALS-YGDHV 356 (545)
T ss_pred CCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeecC-CCccccccccccceeee-cCCee
Confidence 99999999999999999999999999999998 67888999999987755555442 33344455677778877 66679
Q ss_pred EEEEc--C--CCceeeeecCCCCCCCCceeEEEEcCCCCcceeEEEEEeccCcceEEeecCCcccceEEEeecCCCCccc
Q 001462 291 GIWVA--D--VSHVEPYGVGAPEPDQSICTEVKFNPPGSHSLEKVGIIGRSTSGFRSTSPDYETKDIKTIYVDSTGGKPV 366 (1074)
Q Consensus 291 ~IWDl--d--~~~l~~~~~~~~~~~~~~ItsVaFSPDGs~~Lv~vlavG~stG~~r~ivpD~et~eI~~i~iDs~gGepv 366 (1074)
.||.- . .....+|... ...+.|..+.|+|.++ ++++||..|+...++|+ +|||+
T Consensus 357 ~iw~d~~~~s~~~~~pYm~H---~~~~~V~~l~FcP~ED-----vLGIGH~~G~tsilVPG--------------sGePN 414 (545)
T KOG1272|consen 357 QIWKDALKGSGHGETPYMNH---RCGGPVEDLRFCPYED-----VLGIGHAGGITSILVPG--------------SGEPN 414 (545)
T ss_pred eeehhhhcCCCCCCcchhhh---ccCcccccceeccHHH-----eeeccccCCceeEeccC--------------CCCCC
Confidence 99942 2 2233455532 2345999999999999 99999999999999999 99999
Q ss_pred -eeeecCCCCCCCCCCCCChhhhhhh
Q 001462 367 -ASQKIGPLNSPKVVPPLDSEEISDL 391 (1074)
Q Consensus 367 -~~~~~sP~~s~k~~~~~~~~~l~~~ 391 (1074)
|..+.+||+++|||+|.|++.||+.
T Consensus 415 ~Ds~e~nPfetrKQRqE~EVr~LLeK 440 (545)
T KOG1272|consen 415 YDSLEDNPFETRKQRQEKEVRSLLEK 440 (545)
T ss_pred cchhccCcchhhhHHhHHHHHHHHhh
Confidence 9999999999999999999999986
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.6e-26 Score=261.80 Aligned_cols=256 Identities=23% Similarity=0.415 Sum_probs=235.6
Q ss_pred CceEEEEecCCCCEEEEEEecCCCcEEEEEECCCeEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEE
Q 001462 5 GYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKL 84 (1074)
Q Consensus 5 G~~v~~L~gHs~~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~k~l~sl~~hs~~ItsLafSpdg~~LatGs~DG~I~V 84 (1074)
...++.|....-+|.+..|-... +++++|+.|..|++|+.++++.+..+..|...|.|++.+|...++++++.|-.|++
T Consensus 45 qtmVksfeV~~~PvRa~kfiaRk-nWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKl 123 (794)
T KOG0276|consen 45 QTMVKSFEVSEVPVRAAKFIARK-NWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKL 123 (794)
T ss_pred ceeeeeeeecccchhhheeeecc-ceEEEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEE
Confidence 34567788888899999998876 89999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCC-eeEEEEeCCCCCeEEEEEcC-CCCEEEEEECCCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCC--CEEEEE
Q 001462 85 WDLEES-KMVRTLTGHKSNCTAVEFHP-FGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDG--RWVVSG 160 (1074)
Q Consensus 85 WDl~tg-k~i~tl~~h~~~VtsLafSP-dg~~LaSgS~DGsI~IWDi~tg~~v~~l~~h~~~VtsLafSPdG--~~LaSg 160 (1074)
||++.+ .+.+++.+|...|.+++|+| |.+.|++++.|++|++|.+.+..+..++++|..+|.|+.|-+-| .||++|
T Consensus 124 W~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsg 203 (794)
T KOG0276|consen 124 WDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISG 203 (794)
T ss_pred eeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEec
Confidence 999864 67889999999999999999 56799999999999999999999999999999999999999854 599999
Q ss_pred ECCCeEEEEECCCCceEEEeeecCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCCcEEEeeCCCCCCeEEEEEecCCCE
Q 001462 161 GFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRT 240 (1074)
Q Consensus 161 s~DGsI~VWDl~tgk~v~~~~~h~g~ItsLafSPdg~lLaTGS~DGtI~IWDl~tg~~i~t~~~~~~~ItsIafSPDG~~ 240 (1074)
+.|..|+|||.++..++.++.+|...|..++|+|.-.++++|+.||+++||...+.+....+.-..+.+++|+-.+.+..
T Consensus 204 aDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~ 283 (794)
T KOG0276|consen 204 ADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGK 283 (794)
T ss_pred CCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCe
Confidence 99999999999999999999999999999999999999999999999999999999988888888889999999999999
Q ss_pred EEEEECCcEEEEEecCCeeee
Q 001462 241 LFSGFDDNLKVYSWEPVICHD 261 (1074)
Q Consensus 241 LasGsd~~I~Vwd~~s~~~~~ 261 (1074)
+++|.|.+..+..+....+.-
T Consensus 284 i~vG~Deg~i~v~lgreeP~v 304 (794)
T KOG0276|consen 284 IAVGFDEGSVTVKLGREEPAV 304 (794)
T ss_pred EEEeccCCcEEEEccCCCCce
Confidence 999999997777776554433
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.4e-26 Score=268.15 Aligned_cols=292 Identities=22% Similarity=0.346 Sum_probs=256.1
Q ss_pred ccCceEEEEecCCCCEEEEEEecCCCcEEEEEECCCeEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeE
Q 001462 3 KRGYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVI 82 (1074)
Q Consensus 3 ktG~~v~~L~gHs~~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~k~l~sl~~hs~~ItsLafSpdg~~LatGs~DG~I 82 (1074)
.+...++++.|..+.|..++|-.....+||+++..+.+++|+..+..+. .+.+|+..|.+++...+|.+|++|+.|.++
T Consensus 311 ~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~vlSL~~~~~g~llat~sKD~sv 389 (775)
T KOG0319|consen 311 DELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ-IIPGHTEAVLSLDVWSSGDLLATGSKDKSV 389 (775)
T ss_pred cccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE-EEeCchhheeeeeecccCcEEEEecCCceE
Confidence 3456677888999999999986655589999999999999998777665 789999999999966678999999999999
Q ss_pred EEEEcCCCe----eEEEEeCCCCCeEEEEEcCCC-CEEEEEECCCeEEEEECCCCeE-----E----EEEeCCCCCeEEE
Q 001462 83 KLWDLEESK----MVRTLTGHKSNCTAVEFHPFG-EFFASGCMDTNLKIWDIRKKGC-----I----HTYKGHTRGINTI 148 (1074)
Q Consensus 83 ~VWDl~tgk----~i~tl~~h~~~VtsLafSPdg-~~LaSgS~DGsI~IWDi~tg~~-----v----~~l~~h~~~VtsL 148 (1074)
++|.++++. ++....+|...|.+++++..+ .+|++++.|+++++|++...+. + .....|...|.|+
T Consensus 390 ilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~V 469 (775)
T KOG0319|consen 390 ILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCV 469 (775)
T ss_pred EEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccce
Confidence 999885442 345567899999999997755 4899999999999999976221 1 1224688999999
Q ss_pred EEcCCCCEEEEEECCCeEEEEECCCCceEEEeeecCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCCcEEEeeCCCCCC
Q 001462 149 RFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTG 228 (1074)
Q Consensus 149 afSPdG~~LaSgs~DGsI~VWDl~tgk~v~~~~~h~g~ItsLafSPdg~lLaTGS~DGtI~IWDl~tg~~i~t~~~~~~~ 228 (1074)
+++|+.+++++|+.|.+.++|++........+.+|...|.++.|+|..+.+++++.|++|+||.+.++.+++++.+|...
T Consensus 470 aia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~a 549 (775)
T KOG0319|consen 470 AIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSA 549 (775)
T ss_pred EecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEecCCCEEEE-EECCcEEEEEecCCeeeeccccCCceeeE-EEecCCCEEEEEECCCeEEEEEc
Q 001462 229 VHAITFHPDGRTLFS-GFDDNLKVYSWEPVICHDSVDMGWSTLGD-LCINDGKLLGCSFYRNSVGIWVA 295 (1074)
Q Consensus 229 ItsIafSPDG~~Las-Gsd~~I~Vwd~~s~~~~~~l~~~~s~~~~-l~spDGklLAsgs~DGsV~IWDl 295 (1074)
|..+.|-.+|..|++ |++|-+++|++.+..|...++.+...++. ...+.+.++++|+.||.|.+|.-
T Consensus 550 Vlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD 618 (775)
T KOG0319|consen 550 VLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWKD 618 (775)
T ss_pred eEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccceeEEEeecCccceeEecCCCeEEEEeec
Confidence 999999999999988 57788999999999999999887665554 45588889999999999999953
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.5e-27 Score=258.22 Aligned_cols=269 Identities=20% Similarity=0.423 Sum_probs=230.3
Q ss_pred CCCEEEEEEecCCCcEEEEEECCCeEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeeEE
Q 001462 15 SANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVR 94 (1074)
Q Consensus 15 s~~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~k~l~sl~~hs~~ItsLafSpdg~~LatGs~DG~I~VWDl~tgk~i~ 94 (1074)
...|+|+.+..+ .+++|..|.+|+|||.++..++..+.+|++.|.|+.|. .+.|++|+.|.+|+|||+++|+++.
T Consensus 197 skgVYClQYDD~---kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l~ 271 (499)
T KOG0281|consen 197 SKGVYCLQYDDE---KIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPLN 271 (499)
T ss_pred CCceEEEEecch---hhhcccccCceEEeccccHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchhh
Confidence 468999999654 58999999999999999999999999999999999996 5599999999999999999999999
Q ss_pred EEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeE---EEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEC
Q 001462 95 TLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGC---IHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDL 171 (1074)
Q Consensus 95 tl~~h~~~VtsLafSPdg~~LaSgS~DGsI~IWDi~tg~~---v~~l~~h~~~VtsLafSPdG~~LaSgs~DGsI~VWDl 171 (1074)
++.+|.+.|..+.|+ +.++++++.|.+|.+||+..... .+.+.+|...|..+.|+ .+|+++++.|.+|++|++
T Consensus 272 tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~ 347 (499)
T KOG0281|consen 272 TLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWST 347 (499)
T ss_pred HHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEec
Confidence 999999999999998 77999999999999999976542 34567899999999996 569999999999999999
Q ss_pred CCCceEEEeeecCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCCcEEEeeCCCCCCeEEEEEecCCCEEEE-EECCcEE
Q 001462 172 TAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFS-GFDDNLK 250 (1074)
Q Consensus 172 ~tgk~v~~~~~h~g~ItsLafSPdg~lLaTGS~DGtI~IWDl~tg~~i~t~~~~~~~ItsIafSPDG~~Las-Gsd~~I~ 250 (1074)
.+++.+..+.+|...|-|+.+. |+++++|+.|.+|++||+..|.++..+.+|..-|+++.|. .+.+++ +.||.|+
T Consensus 348 st~efvRtl~gHkRGIAClQYr--~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd--~krIVSGaYDGkik 423 (499)
T KOG0281|consen 348 STCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD--NKRIVSGAYDGKIK 423 (499)
T ss_pred cceeeehhhhcccccceehhcc--CeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeec--CceeeeccccceEE
Confidence 9999999999999999999885 8999999999999999999999999999999999999996 455666 5789999
Q ss_pred EEEecCCeeeec---------c-ccCCceeeEEEecCCCEEEEEECCCeEEEEEcCCC
Q 001462 251 VYSWEPVICHDS---------V-DMGWSTLGDLCINDGKLLGCSFYRNSVGIWVADVS 298 (1074)
Q Consensus 251 Vwd~~s~~~~~~---------l-~~~~s~~~~l~spDGklLAsgs~DGsV~IWDld~~ 298 (1074)
|||+........ . .....++... -|...+++++.|.+|.|||...+
T Consensus 424 vWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQ--FD~fqIvsssHddtILiWdFl~~ 479 (499)
T KOG0281|consen 424 VWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQ--FDEFQIISSSHDDTILIWDFLNG 479 (499)
T ss_pred EEecccccCCcccccchHHHhhhhccceeEEEe--ecceEEEeccCCCeEEEEEcCCC
Confidence 999986543311 1 1111222222 25566777789999999998644
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.2e-27 Score=264.48 Aligned_cols=277 Identities=22% Similarity=0.433 Sum_probs=237.3
Q ss_pred ceEEEeeCCCCCeEEEEEcC-CCCEEEEEEcCCeEEEEEcCC-CeeEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEE
Q 001462 49 TALMSLCGLSSPVDSVAFDS-AEVLVLAGASTGVIKLWDLEE-SKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKI 126 (1074)
Q Consensus 49 k~l~sl~~hs~~ItsLafSp-dg~~LatGs~DG~I~VWDl~t-gk~i~tl~~h~~~VtsLafSPdg~~LaSgS~DGsI~I 126 (1074)
+.++.+.+|...|.++.|.| .+.+|++++.|+.|+||++.. +++++++.+|..+|.+++|+.+|..|++++.|+.|++
T Consensus 205 k~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKl 284 (503)
T KOG0282|consen 205 KLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKL 284 (503)
T ss_pred hheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeee
Confidence 45677899999999999999 889999999999999999976 8899999999999999999999999999999999999
Q ss_pred EECCCCeEEEEEeCCCCCeEEEEEcCCC-CEEEEEECCCeEEEEECCCCceEEEeeecCCCeEEEEEcCCCcEEEEEeCC
Q 001462 127 WDIRKKGCIHTYKGHTRGINTIRFTPDG-RWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSAD 205 (1074)
Q Consensus 127 WDi~tg~~v~~l~~h~~~VtsLafSPdG-~~LaSgs~DGsI~VWDl~tgk~v~~~~~h~g~ItsLafSPdg~lLaTGS~D 205 (1074)
||.++|+++..+. ....+.|+.|+|++ +.|++|+.|+.|+.||+++++.++++..|-+.|..+.|-++|..+++.+.|
T Consensus 285 wDtETG~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDd 363 (503)
T KOG0282|consen 285 WDTETGQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDD 363 (503)
T ss_pred eccccceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccC
Confidence 9999999999997 45678999999988 789999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEECCCCcEEEeeC-CCCCCeEEEEEecCCCEEEE-EECCcEEEEEecCCee------eeccccCCceeeEEEecC
Q 001462 206 RTVKFWDLETFELIGSTR-PEVTGVHAITFHPDGRTLFS-GFDDNLKVYSWEPVIC------HDSVDMGWSTLGDLCIND 277 (1074)
Q Consensus 206 GtI~IWDl~tg~~i~t~~-~~~~~ItsIafSPDG~~Las-Gsd~~I~Vwd~~s~~~------~~~l~~~~s~~~~l~spD 277 (1074)
+.++||+....-.+..+. .......++..+|++.++++ ..++.|.+|....... ..........+.+-|+||
T Consensus 364 ks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpD 443 (503)
T KOG0282|consen 364 KSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPD 443 (503)
T ss_pred ccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCC
Confidence 999999998776655433 23345689999999999998 5677788888654221 111223345677888999
Q ss_pred CCEEEEEECCCeEEEEEcCCCceeeeecCCCCCCCCceeEEEEcCCCCcceeE
Q 001462 278 GKLLGCSFYRNSVGIWVADVSHVEPYGVGAPEPDQSICTEVKFNPPGSHSLEK 330 (1074)
Q Consensus 278 GklLAsgs~DGsV~IWDld~~~l~~~~~~~~~~~~~~ItsVaFSPDGs~~Lv~ 330 (1074)
|.+|++|..||.+.+||..+.++.... ..|.+.|..+.|+|-....+++
T Consensus 444 G~~l~SGdsdG~v~~wdwkt~kl~~~l----kah~~~ci~v~wHP~e~Skvat 492 (503)
T KOG0282|consen 444 GRTLCSGDSDGKVNFWDWKTTKLVSKL----KAHDQPCIGVDWHPVEPSKVAT 492 (503)
T ss_pred CCeEEeecCCccEEEeechhhhhhhcc----ccCCcceEEEEecCCCcceeEe
Confidence 999999999999999998765544333 5778999999999977754333
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.1e-26 Score=254.08 Aligned_cols=287 Identities=17% Similarity=0.300 Sum_probs=241.3
Q ss_pred eEEEEecCCCCEEEEEEecCCCcEEEEEECCCeEEEEECCCC---ceEEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEE
Q 001462 7 KLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKP---TALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIK 83 (1074)
Q Consensus 7 ~v~~L~gHs~~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~---k~l~sl~~hs~~ItsLafSpdg~~LatGs~DG~I~ 83 (1074)
..+.+..|++.|.-+.||++| +|||+++.|.+..||++... +..+++.+|..+|..+.||||.++|++|+.+..+.
T Consensus 216 t~qil~~htdEVWfl~FS~nG-kyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~ 294 (519)
T KOG0293|consen 216 TWQILQDHTDEVWFLQFSHNG-KYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLS 294 (519)
T ss_pred hhhhHhhCCCcEEEEEEcCCC-eeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHhee
Confidence 456688999999999999999 99999999999999987443 44778889999999999999999999999999999
Q ss_pred EEEcCCCeeEEEEeC-CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeCCC-CCeEEEEEcCCCCEEEEEE
Q 001462 84 LWDLEESKMVRTLTG-HKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHT-RGINTIRFTPDGRWVVSGG 161 (1074)
Q Consensus 84 VWDl~tgk~i~tl~~-h~~~VtsLafSPdg~~LaSgS~DGsI~IWDi~tg~~v~~l~~h~-~~VtsLafSPdG~~LaSgs 161 (1074)
+||+.+|.....+.. +...+.+++|.|||..|++|+.|+.|+.||+. |.....+++.. ..|.+++.++||+++++.+
T Consensus 295 lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlD-gn~~~~W~gvr~~~v~dlait~Dgk~vl~v~ 373 (519)
T KOG0293|consen 295 LWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLD-GNILGNWEGVRDPKVHDLAITYDGKYVLLVT 373 (519)
T ss_pred eccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCC-cchhhcccccccceeEEEEEcCCCcEEEEEe
Confidence 999999998877753 46789999999999999999999999999975 55555555432 4599999999999999999
Q ss_pred CCCeEEEEECCCCceEEEeeecCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCCcEEEeeCCCCCC--eEEEEEec-CC
Q 001462 162 FDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTG--VHAITFHP-DG 238 (1074)
Q Consensus 162 ~DGsI~VWDl~tgk~v~~~~~h~g~ItsLafSPdg~lLaTGS~DGtI~IWDl~tg~~i~t~~~~~~~--ItsIafSP-DG 238 (1074)
.|..|++|+..+......+. ...+|++++++.+++++++.-.+..|++||+.....+..+.+|..+ +..-+|-. +.
T Consensus 374 ~d~~i~l~~~e~~~dr~lis-e~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~ 452 (519)
T KOG0293|consen 374 VDKKIRLYNREARVDRGLIS-EEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGND 452 (519)
T ss_pred cccceeeechhhhhhhcccc-ccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCc
Confidence 99999999987665544443 4567999999999999999999999999999988888888887654 33445554 44
Q ss_pred CEEEEEEC-CcEEEEEecCCeeeeccccCCceeeEEEe-c-CCCEEEEEECCCeEEEEEcC
Q 001462 239 RTLFSGFD-DNLKVYSWEPVICHDSVDMGWSTLGDLCI-N-DGKLLGCSFYRNSVGIWVAD 296 (1074)
Q Consensus 239 ~~LasGsd-~~I~Vwd~~s~~~~~~l~~~~s~~~~l~s-p-DGklLAsgs~DGsV~IWDld 296 (1074)
.++++|++ +.|+||+...+.....+..+...+.++.+ | |-.++|+++.||+|+||...
T Consensus 453 ~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~ 513 (519)
T KOG0293|consen 453 KFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPS 513 (519)
T ss_pred ceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCC
Confidence 78888865 56999999999999988877766666555 4 67899999999999999653
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.9e-25 Score=242.99 Aligned_cols=291 Identities=19% Similarity=0.245 Sum_probs=250.0
Q ss_pred cCceEEEEecCCCCEEEEEEecCCCcEEEEEECCCeEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEE
Q 001462 4 RGYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIK 83 (1074)
Q Consensus 4 tG~~v~~L~gHs~~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~k~l~sl~~hs~~ItsLafSpdg~~LatGs~DG~I~ 83 (1074)
+|..+.++.+|.+.|+|+.|+.+| .|||+|+-+|.|+||+..++.....+...-..|.-+.|+|.+..|++|+.||.+.
T Consensus 95 ~ge~~~eltgHKDSVt~~~Fshdg-tlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvW 173 (399)
T KOG0296|consen 95 TGEFAGELTGHKDSVTCCSFSHDG-TLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVW 173 (399)
T ss_pred CCcceeEecCCCCceEEEEEccCc-eEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEE
Confidence 466778899999999999999999 8999999999999999999998888876677888899999999999999999999
Q ss_pred EEEcCCCeeEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeCC-CCCeEEEEEcCCCCEEEEEEC
Q 001462 84 LWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGH-TRGINTIRFTPDGRWVVSGGF 162 (1074)
Q Consensus 84 VWDl~tgk~i~tl~~h~~~VtsLafSPdg~~LaSgS~DGsI~IWDi~tg~~v~~l~~h-~~~VtsLafSPdG~~LaSgs~ 162 (1074)
+|.+.++...+.+.+|..++++-.|.|+|+.++++..||+|++||..++.+++.+... .....++.++..+..++.|..
T Consensus 174 mw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~ 253 (399)
T KOG0296|consen 174 MWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNS 253 (399)
T ss_pred EEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccC
Confidence 9999998889999999999999999999999999999999999999999999888632 345778999999999999999
Q ss_pred CCeEEEEECCCCceEEEee--------ecCCCeEEEEEcC---CCcEEEEEeCCCeEEEEECCCCcEEEeeCCCCCCeEE
Q 001462 163 DNVVKVWDLTAGKLLHDFK--------FHEGHIRSIDFHP---LEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHA 231 (1074)
Q Consensus 163 DGsI~VWDl~tgk~v~~~~--------~h~g~ItsLafSP---dg~lLaTGS~DGtI~IWDl~tg~~i~t~~~~~~~Its 231 (1074)
++.+++....+|+.+..+. .+...+.++.+.| .-.+.|+|+-||+|.|||+........ ..|..+|..
T Consensus 254 e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~-c~he~~V~~ 332 (399)
T KOG0296|consen 254 EGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHI-CEHEDGVTK 332 (399)
T ss_pred CccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhhee-ccCCCceEE
Confidence 9999999999998887766 2344445555444 557899999999999999997765444 456778999
Q ss_pred EEEecCCCEEEEEECCcEEEEEecCCeeeeccccCCc-eeeEEEecCCCEEEEEECCCeEEEEEcC
Q 001462 232 ITFHPDGRTLFSGFDDNLKVYSWEPVICHDSVDMGWS-TLGDLCINDGKLLGCSFYRNSVGIWVAD 296 (1074)
Q Consensus 232 IafSPDG~~LasGsd~~I~Vwd~~s~~~~~~l~~~~s-~~~~l~spDGklLAsgs~DGsV~IWDld 296 (1074)
+.|.++..+++++.++.+++||.+++.+...+..+.. ++....+|+++++++++.|+..+||++.
T Consensus 333 l~w~~t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 333 LKWLNTDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred EEEcCcchheeeccCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 9999944444446788899999999999988876654 4556667999999999999999999763
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.1e-25 Score=232.41 Aligned_cols=284 Identities=19% Similarity=0.301 Sum_probs=244.5
Q ss_pred CceEEEEecCCCCEEEEEEecCCCcEEEEEECCCeEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEE
Q 001462 5 GYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKL 84 (1074)
Q Consensus 5 G~~v~~L~gHs~~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~k~l~sl~~hs~~ItsLafSpdg~~LatGs~DG~I~V 84 (1074)
.+.++.+.+|.++|..+.|+-+| +|.++++.|.+|++|+...+..++++.+|...|..++.+.|...|++|+.|..+.+
T Consensus 7 tkr~~~l~~~qgaV~avryN~dG-nY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~v 85 (307)
T KOG0316|consen 7 TKRLSILDCAQGAVRAVRYNVDG-NYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQV 85 (307)
T ss_pred chhceeecccccceEEEEEccCC-CEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEE
Confidence 34677889999999999999999 89999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCeeEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC--eEEEEEeCCCCCeEEEEEcCCCCEEEEEEC
Q 001462 85 WDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKK--GCIHTYKGHTRGINTIRFTPDGRWVVSGGF 162 (1074)
Q Consensus 85 WDl~tgk~i~tl~~h~~~VtsLafSPdg~~LaSgS~DGsI~IWDi~tg--~~v~~l~~h~~~VtsLafSPdG~~LaSgs~ 162 (1074)
||+.+|+..+.+.+|.+.|..+.|+.+...+++|+.|..+++||.++. ++++.+....+.|.++... +..|++|+.
T Consensus 86 wDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS~ 163 (307)
T KOG0316|consen 86 WDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSV 163 (307)
T ss_pred EEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeecc
Confidence 999999999999999999999999999999999999999999998754 5788888788889999886 557999999
Q ss_pred CCeEEEEECCCCceEEEeeecCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCCcEEEeeCCCCCC--eEEEEEecCCCE
Q 001462 163 DNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTG--VHAITFHPDGRT 240 (1074)
Q Consensus 163 DGsI~VWDl~tgk~v~~~~~h~g~ItsLafSPdg~lLaTGS~DGtI~IWDl~tg~~i~t~~~~~~~--ItsIafSPDG~~ 240 (1074)
||+++.||++.|.....+- ..+|++++|+++++.++.++.|++|++.|-.+|+.+..+.+|... -..+++......
T Consensus 164 DGtvRtydiR~G~l~sDy~--g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdth 241 (307)
T KOG0316|consen 164 DGTVRTYDIRKGTLSSDYF--GHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTH 241 (307)
T ss_pred CCcEEEEEeecceeehhhc--CCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeeccccee
Confidence 9999999999999877665 457999999999999999999999999999999999999988754 345567777788
Q ss_pred EEEEEC-CcEEEEEecCCeeeeccccCCce--eeEEEecCCCEEEEEECCCeEEEEE
Q 001462 241 LFSGFD-DNLKVYSWEPVICHDSVDMGWST--LGDLCINDGKLLGCSFYRNSVGIWV 294 (1074)
Q Consensus 241 LasGsd-~~I~Vwd~~s~~~~~~l~~~~s~--~~~l~spDGklLAsgs~DGsV~IWD 294 (1074)
+++|++ |.+++||+........+..+..+ ....+.|.-.-|+++ .++.+..|.
T Consensus 242 V~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A-~~~~~~~~~ 297 (307)
T KOG0316|consen 242 VFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITA-TGHGDLFWY 297 (307)
T ss_pred EEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccceeEe-cCCceecee
Confidence 888864 55999999887776666655444 334445544445554 355677774
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2e-25 Score=260.23 Aligned_cols=283 Identities=21% Similarity=0.361 Sum_probs=250.1
Q ss_pred EEEecCCCCEEEEEEecCCCcEEEEEECCCeEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcC
Q 001462 9 QEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLE 88 (1074)
Q Consensus 9 ~~L~gHs~~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~k~l~sl~~hs~~ItsLafSpdg~~LatGs~DG~I~VWDl~ 88 (1074)
.++.||...|.++++|.+. .++++ +..+.++||+..+.+++.++... .+.+..|-|.++++++|...|.+.+||+.
T Consensus 367 i~~~GHR~dVRsl~vS~d~-~~~~S-ga~~SikiWn~~t~kciRTi~~~--y~l~~~Fvpgd~~Iv~G~k~Gel~vfdla 442 (888)
T KOG0306|consen 367 IEIGGHRSDVRSLCVSSDS-ILLAS-GAGESIKIWNRDTLKCIRTITCG--YILASKFVPGDRYIVLGTKNGELQVFDLA 442 (888)
T ss_pred eeeccchhheeEEEeecCc-eeeee-cCCCcEEEEEccCcceeEEeccc--cEEEEEecCCCceEEEeccCCceEEEEee
Confidence 3578999999999999987 44444 45678999999999999998753 88999999999999999999999999999
Q ss_pred CCeeEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC-----CeE--E------EEEeCCCCCeEEEEEcCCCC
Q 001462 89 ESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRK-----KGC--I------HTYKGHTRGINTIRFTPDGR 155 (1074)
Q Consensus 89 tgk~i~tl~~h~~~VtsLafSPdg~~LaSgS~DGsI~IWDi~t-----g~~--v------~~l~~h~~~VtsLafSPdG~ 155 (1074)
....+.++..|.+.|+.++.+||+..+++|+.|.+|++||..- |.. + ..+. -...|.|+.++|||+
T Consensus 443 S~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLe-l~ddvL~v~~Spdgk 521 (888)
T KOG0306|consen 443 SASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLE-LEDDVLCVSVSPDGK 521 (888)
T ss_pred hhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEe-ccccEEEEEEcCCCc
Confidence 9999999999999999999999999999999999999999741 111 1 1122 346799999999999
Q ss_pred EEEEEECCCeEEEEECCCCceEEEeeecCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCCcEEEeeCCCCCCeEEEEEe
Q 001462 156 WVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFH 235 (1074)
Q Consensus 156 ~LaSgs~DGsI~VWDl~tgk~v~~~~~h~g~ItsLafSPdg~lLaTGS~DGtI~IWDl~tg~~i~t~~~~~~~ItsIafS 235 (1074)
+|+++-.|.+++||-+.+.+....+-+|.-+|.|+.++||++++++|+.|..|++|-+.-|.+-+.+.+|...|.++.|.
T Consensus 522 ~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~ 601 (888)
T KOG0306|consen 522 LLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFL 601 (888)
T ss_pred EEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCEEEE-EECCcEEEEEecCCeeeeccccCC-ceeeEEEecCCCEEEEEECCCeEEEEEcC
Q 001462 236 PDGRTLFS-GFDDNLKVYSWEPVICHDSVDMGW-STLGDLCINDGKLLGCSFYRNSVGIWVAD 296 (1074)
Q Consensus 236 PDG~~Las-Gsd~~I~Vwd~~s~~~~~~l~~~~-s~~~~l~spDGklLAsgs~DGsV~IWDld 296 (1074)
|+...+++ |-|+.++-||-+...++..++.+. .+.+.+.+|+|.++++++.|.+|++|.-.
T Consensus 602 P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~t 664 (888)
T KOG0306|consen 602 PKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERT 664 (888)
T ss_pred ccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeEeeecc
Confidence 98877776 567789999999988888777655 45566677999999999999999999754
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.7e-24 Score=228.12 Aligned_cols=287 Identities=19% Similarity=0.307 Sum_probs=229.0
Q ss_pred eEEEeeCCCCCeEEEEEcCC-CCEEEEEEcCCeEEEEEcCCC---eeEEEE-eCCCCCeEEEEEcCCCCEEEEEECCCeE
Q 001462 50 ALMSLCGLSSPVDSVAFDSA-EVLVLAGASTGVIKLWDLEES---KMVRTL-TGHKSNCTAVEFHPFGEFFASGCMDTNL 124 (1074)
Q Consensus 50 ~l~sl~~hs~~ItsLafSpd-g~~LatGs~DG~I~VWDl~tg---k~i~tl-~~h~~~VtsLafSPdg~~LaSgS~DGsI 124 (1074)
.++.+.+|.+.++.++|+|- |..|++|+.|..|++|+...+ .+...+ .+|...|..++|+|.|++|++|+.|.++
T Consensus 6 ~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~ 85 (312)
T KOG0645|consen 6 LEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATV 85 (312)
T ss_pred eEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceE
Confidence 45677899999999999997 899999999999999998753 233333 3688999999999999999999999999
Q ss_pred EEEECCC--CeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC---ceEEEeeecCCCeEEEEEcCCCcEE
Q 001462 125 KIWDIRK--KGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAG---KLLHDFKFHEGHIRSIDFHPLEFLL 199 (1074)
Q Consensus 125 ~IWDi~t--g~~v~~l~~h~~~VtsLafSPdG~~LaSgs~DGsI~VWDl~tg---k~v~~~~~h~g~ItsLafSPdg~lL 199 (1074)
.||.-.. .+++..+.+|...|.|++|+++|.|||+++.|..|-||.+..+ ++...++.|...|..+.|+|...+|
T Consensus 86 ~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL 165 (312)
T KOG0645|consen 86 VIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLL 165 (312)
T ss_pred EEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCccee
Confidence 9998553 3678899999999999999999999999999999999998744 4677888999999999999999999
Q ss_pred EEEeCCCeEEEEECC---CCcEEEeeCCCCCCeEEEEEecCCCEEEEEEC-CcEEEEEecCCeeeeccccCCceeeEEEe
Q 001462 200 ATGSADRTVKFWDLE---TFELIGSTRPEVTGVHAITFHPDGRTLFSGFD-DNLKVYSWEPVICHDSVDMGWSTLGDLCI 275 (1074)
Q Consensus 200 aTGS~DGtI~IWDl~---tg~~i~t~~~~~~~ItsIafSPDG~~LasGsd-~~I~Vwd~~s~~~~~~l~~~~s~~~~l~s 275 (1074)
++++.|.+|++|+-. ..++..++.+|...|.+++|++.|..|+++++ +.++||-...... ..+.+......+.
T Consensus 166 ~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~~---~~~sr~~Y~v~W~ 242 (312)
T KOG0645|consen 166 FSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDLS---GMHSRALYDVPWD 242 (312)
T ss_pred EEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccCcc---hhcccceEeeeec
Confidence 999999999999866 46788999999999999999999999988765 5699998542211 0111222222222
Q ss_pred cCCCEEEEEECCCeEEEEEcCCCceeee---ecCCCCCCCCceeEEEEcCCCCcceeEEEEEeccCcceEEee
Q 001462 276 NDGKLLGCSFYRNSVGIWVADVSHVEPY---GVGAPEPDQSICTEVKFNPPGSHSLEKVGIIGRSTSGFRSTS 345 (1074)
Q Consensus 276 pDGklLAsgs~DGsV~IWDld~~~l~~~---~~~~~~~~~~~ItsVaFSPDGs~~Lv~vlavG~stG~~r~iv 345 (1074)
...|++++.|+.|++|........+. .......|...|++|+|.|.+.. .++.|...|.+++..
T Consensus 243 --~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~----~L~s~~DDG~v~~W~ 309 (312)
T KOG0645|consen 243 --NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSN----RLASGGDDGIVNFWE 309 (312)
T ss_pred --ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCC----ceeecCCCceEEEEE
Confidence 66899999999999997653322211 11122567889999999996453 667777778666553
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2e-24 Score=243.10 Aligned_cols=345 Identities=17% Similarity=0.292 Sum_probs=276.0
Q ss_pred eEEEEecCCCCEEEEEEecCCCcEEEEEECCC--------eEEEEECCCCceEEEeeCCCCCeEEEEEcC--CCCEEEEE
Q 001462 7 KLQEFVAHSANVNCISIGKKACRFLITGGDDQ--------KVNLWAIGKPTALMSLCGLSSPVDSVAFDS--AEVLVLAG 76 (1074)
Q Consensus 7 ~v~~L~gHs~~Vt~IafSPdg~~lLaTGs~DG--------tV~IWDl~t~k~l~sl~~hs~~ItsLafSp--dg~~LatG 76 (1074)
..+.+.+|...|.|++.+|+. -.+++|...| .++|||..+...+..+......|.|++|++ .|.+|+..
T Consensus 96 ~Qr~y~GH~ddikc~~vHPdr-i~vatGQ~ag~~g~~~~phvriWdsv~L~TL~V~g~f~~GV~~vaFsk~~~G~~l~~v 174 (626)
T KOG2106|consen 96 SQRHYLGHNDDIKCMAVHPDR-IRVATGQGAGTSGRPLQPHVRIWDSVTLSTLHVIGFFDRGVTCVAFSKINGGSLLCAV 174 (626)
T ss_pred hcccccCCCCceEEEeecCCc-eeeccCcccccCCCcCCCeeeecccccceeeeeeccccccceeeeecccCCCceEEEe
Confidence 356789999999999999996 5566665544 499999988888888888889999999997 45566554
Q ss_pred --EcCCeEEEEEcCCCeeEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEE---eC-CCCCeEEEEE
Q 001462 77 --ASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTY---KG-HTRGINTIRF 150 (1074)
Q Consensus 77 --s~DG~I~VWDl~tgk~i~tl~~h~~~VtsLafSPdg~~LaSgS~DGsI~IWDi~tg~~v~~l---~~-h~~~VtsLaf 150 (1074)
+.+..+.||||+.+......+..++.|....|+|.+..+++.+..|++++|+.+.+...+.. +. ....|.|++|
T Consensus 175 D~s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F 254 (626)
T KOG2106|consen 175 DDSNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTF 254 (626)
T ss_pred cCCCccccchhhchhhhccCcceeccceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEE
Confidence 33567999999999888888888899999999998887777778999999999887765443 22 2357999999
Q ss_pred cCCCCEEEEEECCCeEEEEECCCCceEEEeeecCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCCcEEEe--eCCCCCC
Q 001462 151 TPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGS--TRPEVTG 228 (1074)
Q Consensus 151 SPdG~~LaSgs~DGsI~VWDl~tgk~v~~~~~h~g~ItsLafSPdg~lLaTGS~DGtI~IWDl~tg~~i~t--~~~~~~~ 228 (1074)
.++|. +++|..+|.|.||+..+.+..+....|++.|.+++...+|.+|- |+.|+.|..|| ...+.+.. +....++
T Consensus 255 ~engd-viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd-~~y~k~r~~elPe~~G~ 331 (626)
T KOG2106|consen 255 LENGD-VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLS-GGKDRKIILWD-DNYRKLRETELPEQFGP 331 (626)
T ss_pred cCCCC-EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEee-cCccceEEecc-ccccccccccCchhcCC
Confidence 99997 88999999999999998888888779999999999999998776 99999999999 33433333 2334567
Q ss_pred eEEEEEecCCCEEEEE-ECCcEEEEEecCCeeeeccccCCceeeEEEecCCCEEEEEECCCeEEEEEcCCCceeeeecCC
Q 001462 229 VHAITFHPDGRTLFSG-FDDNLKVYSWEPVICHDSVDMGWSTLGDLCINDGKLLGCSFYRNSVGIWVADVSHVEPYGVGA 307 (1074)
Q Consensus 229 ItsIafSPDG~~LasG-sd~~I~Vwd~~s~~~~~~l~~~~s~~~~l~spDGklLAsgs~DGsV~IWDld~~~l~~~~~~~ 307 (1074)
|+.++=...+ |++| +.+.|..=.++........-+....+..+..|+...+++++.|+.+++|+ ..++.+..
T Consensus 332 iRtv~e~~~d--i~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~--- 404 (626)
T KOG2106|consen 332 IRTVAEGKGD--ILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTK--- 404 (626)
T ss_pred eeEEecCCCc--EEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEE---
Confidence 7777644333 5554 55666666677666655555556667777778999999999999999998 34444443
Q ss_pred CCCCCCceeEEEEcCCCCcceeEEEEEeccCcceEEeecCCcccceEEEeecCCCCccceeeecCCCC
Q 001462 308 PEPDQSICTEVKFNPPGSHSLEKVGIIGRSTSGFRSTSPDYETKDIKTIYVDSTGGKPVASQKIGPLN 375 (1074)
Q Consensus 308 ~~~~~~~ItsVaFSPDGs~~Lv~vlavG~stG~~r~ivpD~et~eI~~i~iDs~gGepv~~~~~sP~~ 375 (1074)
....++.|+.|+|.| ++++|...| +|++.|.++..++.+++| +||+.+++|+|-.
T Consensus 405 --~~~d~~~~~~fhpsg------~va~Gt~~G--~w~V~d~e~~~lv~~~~d---~~~ls~v~ysp~G 459 (626)
T KOG2106|consen 405 --IIEDPAECADFHPSG------VVAVGTATG--RWFVLDTETQDLVTIHTD---NEQLSVVRYSPDG 459 (626)
T ss_pred --EecCceeEeeccCcc------eEEEeeccc--eEEEEecccceeEEEEec---CCceEEEEEcCCC
Confidence 346788999999976 477888888 999999999999999999 9999999999863
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.4e-25 Score=247.61 Aligned_cols=288 Identities=15% Similarity=0.237 Sum_probs=237.8
Q ss_pred eEEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCC---eeEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEE
Q 001462 50 ALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEES---KMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKI 126 (1074)
Q Consensus 50 ~l~sl~~hs~~ItsLafSpdg~~LatGs~DG~I~VWDl~tg---k~i~tl~~h~~~VtsLafSPdg~~LaSgS~DGsI~I 126 (1074)
..+.+..|...|+-+.||++|+|||+++.|.+..+|++... +..+++.+|..+|..+.|+||.+++++|+.|..+.+
T Consensus 216 t~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~l 295 (519)
T KOG0293|consen 216 TWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSL 295 (519)
T ss_pred hhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheee
Confidence 34567789999999999999999999999999999987643 457888899999999999999999999999999999
Q ss_pred EECCCCeEEEEEeC-CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeeecC-CCeEEEEEcCCCcEEEEEeC
Q 001462 127 WDIRKKGCIHTYKG-HTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHE-GHIRSIDFHPLEFLLATGSA 204 (1074)
Q Consensus 127 WDi~tg~~v~~l~~-h~~~VtsLafSPdG~~LaSgs~DGsI~VWDl~tgk~v~~~~~h~-g~ItsLafSPdg~lLaTGS~ 204 (1074)
||..+|...+.+.. +...+.+++|.|||..+++|+.|+.|..||+. |.....+++-. ..|.+++..+||+++++.+.
T Consensus 296 wDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlD-gn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~ 374 (519)
T KOG0293|consen 296 WDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLD-GNILGNWEGVRDPKVHDLAITYDGKYVLLVTV 374 (519)
T ss_pred ccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCC-cchhhcccccccceeEEEEEcCCCcEEEEEec
Confidence 99999998888753 35779999999999999999999999999985 55555555432 45999999999999999999
Q ss_pred CCeEEEEECCCCcEEEeeCCCCCCeEEEEEecCCCEEEEE-ECCcEEEEEecCCeeeeccccCCc---eeeEEE-ecCCC
Q 001462 205 DRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSG-FDDNLKVYSWEPVICHDSVDMGWS---TLGDLC-INDGK 279 (1074)
Q Consensus 205 DGtI~IWDl~tg~~i~t~~~~~~~ItsIafSPDG~~LasG-sd~~I~Vwd~~s~~~~~~l~~~~s---~~~~l~-spDGk 279 (1074)
|..|++|+..+......+ ....+|++++.+.||+++++. .+..+.+||++.......+..+.. .+...| ..+..
T Consensus 375 d~~i~l~~~e~~~dr~li-se~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~ 453 (519)
T KOG0293|consen 375 DKKIRLYNREARVDRGLI-SEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDK 453 (519)
T ss_pred ccceeeechhhhhhhccc-cccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcc
Confidence 999999999876555433 345789999999999999986 677899999997666555543322 222222 25678
Q ss_pred EEEEEECCCeEEEEEcCCCceeeeecCCCCCCCCceeEEEEcCCCCcceeEEEEEeccCcceEEeecC
Q 001462 280 LLGCSFYRNSVGIWVADVSHVEPYGVGAPEPDQSICTEVKFNPPGSHSLEKVGIIGRSTSGFRSTSPD 347 (1074)
Q Consensus 280 lLAsgs~DGsV~IWDld~~~l~~~~~~~~~~~~~~ItsVaFSPDGs~~Lv~vlavG~stG~~r~ivpD 347 (1074)
++++|+.|+.|+||+...+.+.... .+|...|+||+|+|-..+ +.+.+...|.+|+.-|+
T Consensus 454 fiaSGSED~kvyIWhr~sgkll~~L----sGHs~~vNcVswNP~~p~----m~ASasDDgtIRIWg~~ 513 (519)
T KOG0293|consen 454 FIASGSEDSKVYIWHRISGKLLAVL----SGHSKTVNCVSWNPADPE----MFASASDDGTIRIWGPS 513 (519)
T ss_pred eEEecCCCceEEEEEccCCceeEee----cCCcceeeEEecCCCCHH----HhhccCCCCeEEEecCC
Confidence 9999999999999998877765554 588999999999998886 56667777877777665
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.8e-25 Score=233.97 Aligned_cols=285 Identities=19% Similarity=0.244 Sum_probs=241.7
Q ss_pred EEecCCCCEEEEEEecCCCcEEEEEECCCeEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCC
Q 001462 10 EFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEE 89 (1074)
Q Consensus 10 ~L~gHs~~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~k~l~sl~~hs~~ItsLafSpdg~~LatGs~DG~I~VWDl~t 89 (1074)
.++||..+++.|.|+.+| .+|++|+.|.+..+|-..+|+.+-++.+|.+.|+|++.+.+.++|++|+.|.++++||+++
T Consensus 5 ~l~GHERplTqiKyN~eG-DLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~t 83 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREG-DLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVET 83 (327)
T ss_pred ccccCccccceEEecCCC-cEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCC
Confidence 478999999999999999 8999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeeEEEEeCCCCCeEEEEEcCCCCEEEEEEC-----CCeEEEEECC-------CCeEEEEEeCCCCCeEEEEEcCCCCEE
Q 001462 90 SKMVRTLTGHKSNCTAVEFHPFGEFFASGCM-----DTNLKIWDIR-------KKGCIHTYKGHTRGINTIRFTPDGRWV 157 (1074)
Q Consensus 90 gk~i~tl~~h~~~VtsLafSPdg~~LaSgS~-----DGsI~IWDi~-------tg~~v~~l~~h~~~VtsLafSPdG~~L 157 (1074)
|+.+..++ ...+|..+.|+.+|++++.+.. .+.|.++|++ ...+...+..+...++.+-|.|-+++|
T Consensus 84 Gk~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~i 162 (327)
T KOG0643|consen 84 GKQLATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETI 162 (327)
T ss_pred CcEEEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEE
Confidence 99999988 6788999999999998887754 3679999998 445677777788999999999999999
Q ss_pred EEEECCCeEEEEECCCCce-EEEeeecCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCCcEEEeeCCCCCCeEEEEEec
Q 001462 158 VSGGFDNVVKVWDLTAGKL-LHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHP 236 (1074)
Q Consensus 158 aSgs~DGsI~VWDl~tgk~-v~~~~~h~g~ItsLafSPdg~lLaTGS~DGtI~IWDl~tg~~i~t~~~~~~~ItsIafSP 236 (1074)
++|..||.|.+||+++|+. +...+.|...|+.|++++|..++++++.|.+-++||..+.+.++++... .++++.+++|
T Consensus 163 i~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te-~PvN~aaisP 241 (327)
T KOG0643|consen 163 IAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTE-RPVNTAAISP 241 (327)
T ss_pred EEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeeec-ccccceeccc
Confidence 9999999999999999854 5555788999999999999999999999999999999999999888654 6899999999
Q ss_pred CCCEEEEEECCc-EEEEEe--cCCe------------eeeccccCCcee-eEEEecCCCEEEEEECCCeEEEEEcCC
Q 001462 237 DGRTLFSGFDDN-LKVYSW--EPVI------------CHDSVDMGWSTL-GDLCINDGKLLGCSFYRNSVGIWVADV 297 (1074)
Q Consensus 237 DG~~LasGsd~~-I~Vwd~--~s~~------------~~~~l~~~~s~~-~~l~spDGklLAsgs~DGsV~IWDld~ 297 (1074)
-..+++.|.... .-|--. +.++ ....+..++.++ ...++|||+..++|+.||.|++...+.
T Consensus 242 ~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 242 LLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFDS 318 (327)
T ss_pred ccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEEecc
Confidence 887777753322 111111 1111 122234455554 455669999999999999999986653
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.6e-25 Score=231.64 Aligned_cols=276 Identities=20% Similarity=0.286 Sum_probs=245.1
Q ss_pred EEEecCCCCEEEEEEecCCCcEEEEEECCCeEEEEECCCCceEEE--eeCCCCCeEEEEEcC-CCCEEEEEEcCCeEEEE
Q 001462 9 QEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMS--LCGLSSPVDSVAFDS-AEVLVLAGASTGVIKLW 85 (1074)
Q Consensus 9 ~~L~gHs~~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~k~l~s--l~~hs~~ItsLafSp-dg~~LatGs~DG~I~VW 85 (1074)
+.+++|...|.+|+|+-+| ..|++|+.|+++.+|++........ ..+|...|-.++|+| +...|++++.|..|++|
T Consensus 14 r~~~~~~~~v~Sv~wn~~g-~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~w 92 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDG-TKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIW 92 (313)
T ss_pred HHhhhhhhcceEEEEcccC-ceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEE
Confidence 5678999999999999999 8899999999999999977655443 468999999999998 55789999999999999
Q ss_pred EcCCCeeEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCe
Q 001462 86 DLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNV 165 (1074)
Q Consensus 86 Dl~tgk~i~tl~~h~~~VtsLafSPdg~~LaSgS~DGsI~IWDi~tg~~v~~l~~h~~~VtsLafSPdG~~LaSgs~DGs 165 (1074)
|++.+++...+....+.+ -+.|+|+|+++++++.|..|.+.|.++.+.....+ ....+..++|+-++.+|+.....|.
T Consensus 93 d~r~~k~~~~i~~~~eni-~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~-~~~e~ne~~w~~~nd~Fflt~GlG~ 170 (313)
T KOG1407|consen 93 DIRSGKCTARIETKGENI-NITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQ-FKFEVNEISWNNSNDLFFLTNGLGC 170 (313)
T ss_pred EeccCcEEEEeeccCcce-EEEEcCCCCEEEEecCcccEEEEEecccceeehhc-ccceeeeeeecCCCCEEEEecCCce
Confidence 999999999887555554 57999999999999999999999999888777665 4456888999988887777777899
Q ss_pred EEEEECCCCceEEEeeecCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCCcEEEeeCCCCCCeEEEEEecCCCEEEEEE
Q 001462 166 VKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGF 245 (1074)
Q Consensus 166 I~VWDl~tgk~v~~~~~h~g~ItsLafSPdg~lLaTGS~DGtI~IWDl~tg~~i~t~~~~~~~ItsIafSPDG~~LasGs 245 (1074)
|.|.....-+++..+++|...+.|+.|+|+|++||+|+.|..+.+||+...-+...+..+..+|+.+.|+.||++|++|+
T Consensus 171 v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaS 250 (313)
T KOG1407|consen 171 VEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASAS 250 (313)
T ss_pred EEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccC
Confidence 99999999999999999999999999999999999999999999999999889999999999999999999999999997
Q ss_pred CCc-EEEEEecCCeeeeccccCCceeeEEEecCCCEEEEEECC
Q 001462 246 DDN-LKVYSWEPVICHDSVDMGWSTLGDLCINDGKLLGCSFYR 287 (1074)
Q Consensus 246 d~~-I~Vwd~~s~~~~~~l~~~~s~~~~l~spDGklLAsgs~D 287 (1074)
++. |-|=+.+++.....++.......+.|.|...+||.+..|
T Consensus 251 EDh~IDIA~vetGd~~~eI~~~~~t~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 251 EDHFIDIAEVETGDRVWEIPCEGPTFTVAWHPKRPLLAYACDD 293 (313)
T ss_pred ccceEEeEecccCCeEEEeeccCCceeEEecCCCceeeEEecC
Confidence 664 778888888888888888888889999999999988755
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.3e-24 Score=249.16 Aligned_cols=311 Identities=20% Similarity=0.373 Sum_probs=265.2
Q ss_pred CceEEEEecCCCCEEEEEEecCCCcEEEEEECCCeEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEE
Q 001462 5 GYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKL 84 (1074)
Q Consensus 5 G~~v~~L~gHs~~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~k~l~sl~~hs~~ItsLafSpdg~~LatGs~DG~I~V 84 (1074)
+..+-.|.||..+|+++.|...| ..|++|+.|+.|.+||+-...-+..+.+|...|+.+-|....++|++.+.|+.|++
T Consensus 97 ~~~~~tfngHK~AVt~l~fd~~G-~rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F~~~~~~lvS~sKDs~iK~ 175 (888)
T KOG0306|consen 97 EEILITFNGHKAAVTTLKFDKIG-TRLASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQALFLNGDSFLVSVSKDSMIKF 175 (888)
T ss_pred CceeeeecccccceEEEEEcccC-ceEeecCCCccEEEEEeccceeeEEeecchHHHhHHhccCCCeEEEEeccCceEEE
Confidence 35667889999999999999999 78999999999999999888889999999999999999998899999999999999
Q ss_pred EEcCCCeeEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC------------------------CeEE-----
Q 001462 85 WDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRK------------------------KGCI----- 135 (1074)
Q Consensus 85 WDl~tgk~i~tl~~h~~~VtsLafSPdg~~LaSgS~DGsI~IWDi~t------------------------g~~v----- 135 (1074)
||+++..+..+.-.|.+.|+.+++++ +.+++++.|+.+.+|++.. +..+
T Consensus 176 WdL~tqhCf~Thvd~r~Eiw~l~~~~--~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d 253 (888)
T KOG0306|consen 176 WDLETQHCFETHVDHRGEIWALVLDE--KLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTD 253 (888)
T ss_pred EecccceeeeEEecccceEEEEEEec--ceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeec
Confidence 99999999999999999999999996 7888889999999998810 0000
Q ss_pred --------------------------------------------------------------------------------
Q 001462 136 -------------------------------------------------------------------------------- 135 (1074)
Q Consensus 136 -------------------------------------------------------------------------------- 135 (1074)
T Consensus 254 ~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~ 333 (888)
T KOG0306|consen 254 FSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGG 333 (888)
T ss_pred CcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCC
Confidence
Q ss_pred ---------------------------------EEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeee
Q 001462 136 ---------------------------------HTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKF 182 (1074)
Q Consensus 136 ---------------------------------~~l~~h~~~VtsLafSPdG~~LaSgs~DGsI~VWDl~tgk~v~~~~~ 182 (1074)
..+.+|...|..++++.+...+++| .++.|++|+..+.+++.++.+
T Consensus 334 ~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sg-a~~SikiWn~~t~kciRTi~~ 412 (888)
T KOG0306|consen 334 TENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASG-AGESIKIWNRDTLKCIRTITC 412 (888)
T ss_pred cceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeeec-CCCcEEEEEccCcceeEEecc
Confidence 0011355567788888776655554 478999999999999999974
Q ss_pred cCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCCcEEEeeCCCCCCeEEEEEecCCCEEEEE-ECCcEEEEEecCCee--
Q 001462 183 HEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSG-FDDNLKVYSWEPVIC-- 259 (1074)
Q Consensus 183 h~g~ItsLafSPdg~lLaTGS~DGtI~IWDl~tg~~i~t~~~~~~~ItsIafSPDG~~LasG-sd~~I~Vwd~~s~~~-- 259 (1074)
+.+.+..|-|.++++++|...|.+.+||+.+...+..+..|.+.|++++.+||++.+++| .|..+++|++.-...
T Consensus 413 --~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~ 490 (888)
T KOG0306|consen 413 --GYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVP 490 (888)
T ss_pred --ccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccC
Confidence 488999999999999999999999999999999999999999999999999999999986 567799999853211
Q ss_pred -----------eeccccCCceeeEEEecCCCEEEEEECCCeEEEEEcCCCceeeeecCCCCCCCCceeEEEEcCCCC
Q 001462 260 -----------HDSVDMGWSTLGDLCINDGKLLGCSFYRNSVGIWVADVSHVEPYGVGAPEPDQSICTEVKFNPPGS 325 (1074)
Q Consensus 260 -----------~~~l~~~~s~~~~l~spDGklLAsgs~DGsV~IWDld~~~l~~~~~~~~~~~~~~ItsVaFSPDGs 325 (1074)
...+.....+.+..++|||++||++--|++|+||-+++-+..--. .+|.-+|.|+..|||++
T Consensus 491 gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsL----YGHkLPV~smDIS~DSk 563 (888)
T KOG0306|consen 491 GTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSL----YGHKLPVLSMDISPDSK 563 (888)
T ss_pred cccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeee----cccccceeEEeccCCcC
Confidence 133456667888889999999999999999999998754432222 68999999999999999
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.3e-24 Score=226.53 Aligned_cols=269 Identities=20% Similarity=0.292 Sum_probs=230.1
Q ss_pred eEEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeeEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEC
Q 001462 50 ALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDI 129 (1074)
Q Consensus 50 ~l~sl~~hs~~ItsLafSpdg~~LatGs~DG~I~VWDl~tgk~i~tl~~h~~~VtsLafSPdg~~LaSgS~DGsI~IWDi 129 (1074)
.+..+..+.++|..+.|+-+|+|.++++.|.+|++|+...|.+++++.+|...|..++.+.|+..|++|+.|..|.+||+
T Consensus 9 r~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV 88 (307)
T KOG0316|consen 9 RLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDV 88 (307)
T ss_pred hceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEc
Confidence 45667889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC--ceEEEeeecCCCeEEEEEcCCCcEEEEEeCCCe
Q 001462 130 RKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAG--KLLHDFKFHEGHIRSIDFHPLEFLLATGSADRT 207 (1074)
Q Consensus 130 ~tg~~v~~l~~h~~~VtsLafSPdG~~LaSgs~DGsI~VWDl~tg--k~v~~~~~h~g~ItsLafSPdg~lLaTGS~DGt 207 (1074)
.+|+.+..+.+|...|..+.|+.+...+++|+.|..+++||.++. ++++.+......|.++... +..|++|+.||+
T Consensus 89 ~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS~DGt 166 (307)
T KOG0316|consen 89 NTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSVDGT 166 (307)
T ss_pred ccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeeccCCc
Confidence 999999999999999999999999999999999999999999764 6788887777889999886 678999999999
Q ss_pred EEEEECCCCcEEEeeCCCCCCeEEEEEecCCCEEEEE-ECCcEEEEEecCCeeeeccccCCce---eeEEEecCCCEEEE
Q 001462 208 VKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSG-FDDNLKVYSWEPVICHDSVDMGWST---LGDLCINDGKLLGC 283 (1074)
Q Consensus 208 I~IWDl~tg~~i~t~~~~~~~ItsIafSPDG~~LasG-sd~~I~Vwd~~s~~~~~~l~~~~s~---~~~l~spDGklLAs 283 (1074)
++.||++.|.......+ .+|+++.|++||+..+++ .+..+++.|-++++....+..+... +.+.+......+++
T Consensus 167 vRtydiR~G~l~sDy~g--~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~s 244 (307)
T KOG0316|consen 167 VRTYDIRKGTLSSDYFG--HPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFS 244 (307)
T ss_pred EEEEEeecceeehhhcC--CcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccceeEEe
Confidence 99999999987766544 579999999999988876 5677999999998887776554332 22333345568899
Q ss_pred EECCCeEEEEEcCCCceeeeecCCCCCCCC-ceeEEEEcCCCCc
Q 001462 284 SFYRNSVGIWVADVSHVEPYGVGAPEPDQS-ICTEVKFNPPGSH 326 (1074)
Q Consensus 284 gs~DGsV~IWDld~~~l~~~~~~~~~~~~~-~ItsVaFSPDGs~ 326 (1074)
|+.||.|.+||+...++..-. ..+.. .+.++.++|--..
T Consensus 245 gSEDG~Vy~wdLvd~~~~sk~----~~~~~v~v~dl~~hp~~~~ 284 (307)
T KOG0316|consen 245 GSEDGKVYFWDLVDETQISKL----SVVSTVIVTDLSCHPTMDD 284 (307)
T ss_pred ccCCceEEEEEeccceeeeee----ccCCceeEEeeecccCccc
Confidence 999999999999655544332 22333 4889999997663
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.7e-25 Score=263.82 Aligned_cols=288 Identities=19% Similarity=0.374 Sum_probs=215.7
Q ss_pred EEEEe-cCCCCEEEEEEecCCCcEEEEEECCCeEEEEECCCCceEEEeeCC----------CCCeEEEEEcC---CCC--
Q 001462 8 LQEFV-AHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGL----------SSPVDSVAFDS---AEV-- 71 (1074)
Q Consensus 8 v~~L~-gHs~~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~k~l~sl~~h----------s~~ItsLafSp---dg~-- 71 (1074)
.+.+. +|.+.|.|+.||+|| +|||+||.||.|+||.+...+....-.+. ...+..+.-++ .++
T Consensus 259 ~Qe~~~ah~gaIw~mKFS~DG-KyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s 337 (712)
T KOG0283|consen 259 VQEISNAHKGAIWAMKFSHDG-KYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTS 337 (712)
T ss_pred eeccccccCCcEEEEEeCCCC-ceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccc
Confidence 45566 899999999999999 99999999999999998542221100000 00011111111 001
Q ss_pred EEEEEEcCCeEEEEEcC----CCeeEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeCCCCCeEE
Q 001462 72 LVLAGASTGVIKLWDLE----ESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINT 147 (1074)
Q Consensus 72 ~LatGs~DG~I~VWDl~----tgk~i~tl~~h~~~VtsLafSPdg~~LaSgS~DGsI~IWDi~tg~~v~~l~~h~~~Vts 147 (1074)
..-.+..... .+.+.. ..++++.+.+|.+.|.++.|+. .++|++++.|.+|++|++....++..|. |.+.|+|
T Consensus 338 ~~~~~~~s~~-~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSK-n~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTc 414 (712)
T KOG0283|consen 338 SSRKGSQSPC-VLLPLKAFVFSEKPFCEFKGHTADILDLSWSK-NNFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTC 414 (712)
T ss_pred ccccccCCcc-ccCCCccccccccchhhhhccchhheeccccc-CCeeEeccccccEEeecCCCcceeeEEe-cCCeeEE
Confidence 1111222222 122211 2467888999999999999996 5689999999999999999999999998 9999999
Q ss_pred EEEcC-CCCEEEEEECCCeEEEEECCCCceEEEeeecCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCCcEEEeeCC--
Q 001462 148 IRFTP-DGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRP-- 224 (1074)
Q Consensus 148 LafSP-dG~~LaSgs~DGsI~VWDl~tgk~v~~~~~h~g~ItsLafSPdg~lLaTGS~DGtI~IWDl~tg~~i~t~~~-- 224 (1074)
++|+| |.+||++|+.||.|+||++...+.+.-... ..-|++++|.|+|++.++|+.+|.+++|+....+....+..
T Consensus 415 VaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl-~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~ 493 (712)
T KOG0283|consen 415 VAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDL-RDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRL 493 (712)
T ss_pred EEecccCCCcEeecccccceEEeecCcCeeEeehhh-hhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEee
Confidence 99999 888999999999999999987776655554 47799999999999999999999999999987766544321
Q ss_pred C------CCCeEEEEEecCC--CEEEEEECCcEEEEEecCCeeeecc---ccCCceeeEEEecCCCEEEEEECCCeEEEE
Q 001462 225 E------VTGVHAITFHPDG--RTLFSGFDDNLKVYSWEPVICHDSV---DMGWSTLGDLCINDGKLLGCSFYRNSVGIW 293 (1074)
Q Consensus 225 ~------~~~ItsIafSPDG--~~LasGsd~~I~Vwd~~s~~~~~~l---~~~~s~~~~l~spDGklLAsgs~DGsV~IW 293 (1074)
+ ...|+++.|.|.. +.|++..|..|+|||.........+ ......+...+..||++|++++.|..|+||
T Consensus 494 ~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW 573 (712)
T KOG0283|consen 494 HNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIW 573 (712)
T ss_pred ccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEE
Confidence 1 2369999999864 3788888999999999655544433 333456677778899999999999999999
Q ss_pred EcCCCce
Q 001462 294 VADVSHV 300 (1074)
Q Consensus 294 Dld~~~l 300 (1074)
+.+....
T Consensus 574 ~~~~~~~ 580 (712)
T KOG0283|consen 574 KNDSFNS 580 (712)
T ss_pred eCCCCcc
Confidence 9865443
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.5e-24 Score=262.68 Aligned_cols=311 Identities=17% Similarity=0.291 Sum_probs=246.3
Q ss_pred CCCCEEEEEEecCCCcEEEEEE--CCCeEEEEECCC------------CceEEEeeCCCCCeEEEEEcCCCCEEEEEEcC
Q 001462 14 HSANVNCISIGKKACRFLITGG--DDQKVNLWAIGK------------PTALMSLCGLSSPVDSVAFDSAEVLVLAGAST 79 (1074)
Q Consensus 14 Hs~~Vt~IafSPdg~~lLaTGs--~DGtV~IWDl~t------------~k~l~sl~~hs~~ItsLafSpdg~~LatGs~D 79 (1074)
|...|.+|+.+|+| ..+++|| .||.++||+... .+.+.....|.+.|.|+.|++||.+||+|+.|
T Consensus 12 ~~~~IfSIdv~pdg-~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD 90 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDG-VKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDD 90 (942)
T ss_pred CCeeEEEEEecCCc-eeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCc
Confidence 34579999999999 7899999 899999998621 34456667899999999999999999999999
Q ss_pred CeEEEEEcCC------------------CeeEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeCC
Q 001462 80 GVIKLWDLEE------------------SKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGH 141 (1074)
Q Consensus 80 G~I~VWDl~t------------------gk~i~tl~~h~~~VtsLafSPdg~~LaSgS~DGsI~IWDi~tg~~v~~l~~h 141 (1074)
+.|.||.... .+.+..+.+|...|.+++|+|++.+|++++.|++|.||+..+.+.+..+.+|
T Consensus 91 ~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H 170 (942)
T KOG0973|consen 91 RLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGH 170 (942)
T ss_pred ceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeeeecc
Confidence 9999998762 1356778899999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeeecC------CCeEEEEEcCCCcEEEEEeC----CCeEEEE
Q 001462 142 TRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHE------GHIRSIDFHPLEFLLATGSA----DRTVKFW 211 (1074)
Q Consensus 142 ~~~VtsLafSPdG~~LaSgs~DGsI~VWDl~tgk~v~~~~~h~------g~ItsLafSPdg~lLaTGS~----DGtI~IW 211 (1074)
...|..+.|.|-|+||++-+.|++|+||++.+....+.+..+- ..+..+.|+|||.+|++... -.++.|.
T Consensus 171 ~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~Ii 250 (942)
T KOG0973|consen 171 QSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAII 250 (942)
T ss_pred cccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEE
Confidence 9999999999999999999999999999988877777665432 34788999999999998753 3468899
Q ss_pred ECCCCcEEEeeCCCCCCeEEEEEecCCCEEEEEECCcEEEEEecCCeeeeccccCCceeeEEEecCCCEEEEEECCCeEE
Q 001462 212 DLETFELIGSTRPEVTGVHAITFHPDGRTLFSGFDDNLKVYSWEPVICHDSVDMGWSTLGDLCINDGKLLGCSFYRNSVG 291 (1074)
Q Consensus 212 Dl~tg~~i~t~~~~~~~ItsIafSPDG~~LasGsd~~I~Vwd~~s~~~~~~l~~~~s~~~~l~spDGklLAsgs~DGsV~ 291 (1074)
+-.+++.-..+.+|..++.++.|+|. |+ .-..... ...... ..+ ..+|+|+.|++|.
T Consensus 251 eR~tWk~~~~LvGH~~p~evvrFnP~---lf----------e~~~~ng---~~~~~~--~~y-----~i~AvgSqDrSlS 307 (942)
T KOG0973|consen 251 ERGTWKVDKDLVGHSAPVEVVRFNPK---LF----------ERNNKNG---TSTQPN--CYY-----CIAAVGSQDRSLS 307 (942)
T ss_pred ecCCceeeeeeecCCCceEEEEeChH---Hh----------ccccccC---CccCCC--cce-----EEEEEecCCccEE
Confidence 98888888899999999999999983 11 1110000 000000 000 2489999999999
Q ss_pred EEEcCCCceeeeecCCCCCCCCceeEEEEcCCCCcceeEEEEEeccCcceEEeecCCcccceEEEee
Q 001462 292 IWVADVSHVEPYGVGAPEPDQSICTEVKFNPPGSHSLEKVGIIGRSTSGFRSTSPDYETKDIKTIYV 358 (1074)
Q Consensus 292 IWDld~~~l~~~~~~~~~~~~~~ItsVaFSPDGs~~Lv~vlavG~stG~~r~ivpD~et~eI~~i~i 358 (1074)
||.. ....|+.+.+ .-....|..++|||||- .++.-..+| .....+++..|+.....
T Consensus 308 VW~T--~~~RPl~vi~-~lf~~SI~DmsWspdG~-----~LfacS~DG--tV~~i~Fee~ElG~~ls 364 (942)
T KOG0973|consen 308 VWNT--ALPRPLFVIH-NLFNKSIVDMSWSPDGF-----SLFACSLDG--TVALIHFEEKELGVALS 364 (942)
T ss_pred EEec--CCCCchhhhh-hhhcCceeeeeEcCCCC-----eEEEEecCC--eEEEEEcchHHhCcccC
Confidence 9965 5666766544 45578999999999999 455555555 24444556666555443
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.2e-26 Score=244.25 Aligned_cols=280 Identities=20% Similarity=0.359 Sum_probs=242.7
Q ss_pred cCCCCEEEEEEecCCCcEEEEEECCCeEEEEECCCCceEEEe--------eCCCCCeEEEEEcCCCCEEEEEEcCCeEEE
Q 001462 13 AHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSL--------CGLSSPVDSVAFDSAEVLVLAGASTGVIKL 84 (1074)
Q Consensus 13 gHs~~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~k~l~sl--------~~hs~~ItsLafSpdg~~LatGs~DG~I~V 84 (1074)
+..+.+-|..|+||| +||++|+.||.|.+|++.+|+....+ .-+..+|.|+.|+.|...|++|+.||.|++
T Consensus 211 g~KSh~EcA~FSPDg-qyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKv 289 (508)
T KOG0275|consen 211 GQKSHVECARFSPDG-QYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKV 289 (508)
T ss_pred ccccchhheeeCCCC-ceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEE
Confidence 556789999999999 89999999999999999888765443 346789999999999999999999999999
Q ss_pred EEcCCCeeEEEEe-CCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECC
Q 001462 85 WDLEESKMVRTLT-GHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFD 163 (1074)
Q Consensus 85 WDl~tgk~i~tl~-~h~~~VtsLafSPdg~~LaSgS~DGsI~IWDi~tg~~v~~l~~h~~~VtsLafSPdG~~LaSgs~D 163 (1074)
|.+++|.+++.+. .|...|+|+.|+.|+..+++++.|..+++.-+++|+++..+.+|...|....|.+||.++++++.|
T Consensus 290 Wri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsD 369 (508)
T KOG0275|consen 290 WRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSD 369 (508)
T ss_pred EEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCC
Confidence 9999999999887 899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEECCCCceEEEeee--cCCCeEEEEEcCC-CcEEEEEeCCCeEEEEECCCCcEEEeeCC---CCCCeEEEEEecC
Q 001462 164 NVVKVWDLTAGKLLHDFKF--HEGHIRSIDFHPL-EFLLATGSADRTVKFWDLETFELIGSTRP---EVTGVHAITFHPD 237 (1074)
Q Consensus 164 GsI~VWDl~tgk~v~~~~~--h~g~ItsLafSPd-g~lLaTGS~DGtI~IWDl~tg~~i~t~~~---~~~~ItsIafSPD 237 (1074)
|+|++|+..+.+++.+|+. .+.+|..+-.-|. ...++++....+|+|.++. |+.+..+.. ..+...+.+++|.
T Consensus 370 gtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVrsfsSGkREgGdFi~~~lSpk 448 (508)
T KOG0275|consen 370 GTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRSFSSGKREGGDFINAILSPK 448 (508)
T ss_pred ccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEeeeccCCccCCceEEEEecCC
Confidence 9999999999999998874 4456888877774 4677888888999999986 677766643 3456778889999
Q ss_pred CCEEEE-EECCcEEEEEecCCeeeeccccC-CceeeEEEecCCCEEEEEECCCeEEEEE
Q 001462 238 GRTLFS-GFDDNLKVYSWEPVICHDSVDMG-WSTLGDLCINDGKLLGCSFYRNSVGIWV 294 (1074)
Q Consensus 238 G~~Las-Gsd~~I~Vwd~~s~~~~~~l~~~-~s~~~~l~spDGklLAsgs~DGsV~IWD 294 (1074)
|.++++ |.|+.++.|....+.....+..+ ..+++..-.|..++||+-+.||.+++|.
T Consensus 449 GewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 449 GEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred CcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence 999998 56666888888887776665543 4556666668889999999999999994
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.8e-25 Score=234.27 Aligned_cols=287 Identities=18% Similarity=0.269 Sum_probs=257.7
Q ss_pred EEEeeCCCCCeEEEEEcC---CCCEEEEEEcCCeEEEEEcCCCeeEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEE
Q 001462 51 LMSLCGLSSPVDSVAFDS---AEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIW 127 (1074)
Q Consensus 51 l~sl~~hs~~ItsLafSp---dg~~LatGs~DG~I~VWDl~tgk~i~tl~~h~~~VtsLafSPdg~~LaSgS~DGsI~IW 127 (1074)
.....+|..+|..++|+| +|-+|++++.||.-.+-+-++|.-+.++.+|.+.|+..+++.+...-++++.|-+-++|
T Consensus 7 pl~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw 86 (334)
T KOG0278|consen 7 PLTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVW 86 (334)
T ss_pred ceEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhh
Confidence 345678999999999985 89999999999999998888999999999999999999999888888999999999999
Q ss_pred ECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCc-eEEEeeecCCCeEEEEEcCCCcEEEEEeCCC
Q 001462 128 DIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGK-LLHDFKFHEGHIRSIDFHPLEFLLATGSADR 206 (1074)
Q Consensus 128 Di~tg~~v~~l~~h~~~VtsLafSPdG~~LaSgs~DGsI~VWDl~tgk-~v~~~~~h~g~ItsLafSPdg~lLaTGS~DG 206 (1074)
|.-+|..++.+. |..-|..++|+.|.++|++|+.+..++|||+...+ +..++.+|.+.|..+.|....+.+++...|+
T Consensus 87 ~a~tgdelhsf~-hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~ 165 (334)
T KOG0278|consen 87 DAVTGDELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDK 165 (334)
T ss_pred hhhhhhhhhhhh-hhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCC
Confidence 999999999997 88899999999999999999999999999997754 5678889999999999999888899989999
Q ss_pred eEEEEECCCCcEEEeeCCCCCCeEEEEEecCCCEEEEEECCcEEEEEecCCeeeeccccCCceeeEEEecCCCEEEEEEC
Q 001462 207 TVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGFDDNLKVYSWEPVICHDSVDMGWSTLGDLCINDGKLLGCSFY 286 (1074)
Q Consensus 207 tI~IWDl~tg~~i~t~~~~~~~ItsIafSPDG~~LasGsd~~I~Vwd~~s~~~~~~l~~~~s~~~~l~spDGklLAsgs~ 286 (1074)
+|++||.+++..+..+... .+|+++.++++|++|.++..++|.+||......++.+.+...+......|+..+++||+.
T Consensus 166 tVRLWD~rTgt~v~sL~~~-s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~k~~fVaGge 244 (334)
T KOG0278|consen 166 TVRLWDHRTGTEVQSLEFN-SPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYKMPCNVESASLHPKKEFFVAGGE 244 (334)
T ss_pred ceEEEEeccCcEEEEEecC-CCCcceeeccCCCEEEEecCceeEEeccccccceeeccCccccccccccCCCceEEecCc
Confidence 9999999999999887643 678999999999999999999999999999999999999988888888899999999999
Q ss_pred CCeEEEEEcCCCceeeeecCCCCCCCCceeEEEEcCCCCcceeEEEEEeccCcceEEeecC
Q 001462 287 RNSVGIWVADVSHVEPYGVGAPEPDQSICTEVKFNPPGSHSLEKVGIIGRSTSGFRSTSPD 347 (1074)
Q Consensus 287 DGsV~IWDld~~~l~~~~~~~~~~~~~~ItsVaFSPDGs~~Lv~vlavG~stG~~r~ivpD 347 (1074)
|+.++.||.+++.-.-.. ..+|.++|.||.|+|||. +-+.|...|.+++....
T Consensus 245 d~~~~kfDy~TgeEi~~~---nkgh~gpVhcVrFSPdGE-----~yAsGSEDGTirlWQt~ 297 (334)
T KOG0278|consen 245 DFKVYKFDYNTGEEIGSY---NKGHFGPVHCVRFSPDGE-----LYASGSEDGTIRLWQTT 297 (334)
T ss_pred ceEEEEEeccCCceeeec---ccCCCCceEEEEECCCCc-----eeeccCCCceEEEEEec
Confidence 999999999876543331 168899999999999999 77888888877766543
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.9e-23 Score=248.52 Aligned_cols=248 Identities=20% Similarity=0.316 Sum_probs=199.9
Q ss_pred CCCCEEEEEEecCCCcEEEEEECCCeEEEEECCCCceE-------------EEeeCCCCCeEEEEEcC-CCCEEEEEEcC
Q 001462 14 HSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTAL-------------MSLCGLSSPVDSVAFDS-AEVLVLAGAST 79 (1074)
Q Consensus 14 Hs~~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~k~l-------------~sl~~hs~~ItsLafSp-dg~~LatGs~D 79 (1074)
|-..|....+++++ ..+++++.+.....|+...+..+ ..+.+|...|.+++|+| ++.+|++|+.|
T Consensus 19 ~~~~i~~~~~~~d~-~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~D 97 (493)
T PTZ00421 19 HFLNVTPSTALWDC-SNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASED 97 (493)
T ss_pred ceeccccccccCCC-CCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCC
Confidence 34566667777776 34566666667777775433222 24678999999999999 88999999999
Q ss_pred CeEEEEEcCCC-------eeEEEEeCCCCCeEEEEEcCCC-CEEEEEECCCeEEEEECCCCeEEEEEeCCCCCeEEEEEc
Q 001462 80 GVIKLWDLEES-------KMVRTLTGHKSNCTAVEFHPFG-EFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFT 151 (1074)
Q Consensus 80 G~I~VWDl~tg-------k~i~tl~~h~~~VtsLafSPdg-~~LaSgS~DGsI~IWDi~tg~~v~~l~~h~~~VtsLafS 151 (1074)
|.|++||+.++ ..+..+.+|...|.+++|+|++ ++|++|+.|+.|+|||+.++..+..+.+|...|.+++|+
T Consensus 98 gtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~s 177 (493)
T PTZ00421 98 GTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWN 177 (493)
T ss_pred CEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEE
Confidence 99999999765 3467788999999999999985 699999999999999999999999999999999999999
Q ss_pred CCCCEEEEEECCCeEEEEECCCCceEEEeeecCCC-eEEEEEcCCCcEEEEEe----CCCeEEEEECCCCc-EEEeeCCC
Q 001462 152 PDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGH-IRSIDFHPLEFLLATGS----ADRTVKFWDLETFE-LIGSTRPE 225 (1074)
Q Consensus 152 PdG~~LaSgs~DGsI~VWDl~tgk~v~~~~~h~g~-ItsLafSPdg~lLaTGS----~DGtI~IWDl~tg~-~i~t~~~~ 225 (1074)
|+|.+|++++.||.|++||+++++.+..+.+|.+. +..+.|.+++..|++++ .|+.|++||+++.. .+.....+
T Consensus 178 pdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d 257 (493)
T PTZ00421 178 LDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLD 257 (493)
T ss_pred CCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccC
Confidence 99999999999999999999999999999888765 45678999877777654 47899999998754 33333222
Q ss_pred -CCCeEEEEEecCCCEEEEEE--CCcEEEEEecCCeeeec
Q 001462 226 -VTGVHAITFHPDGRTLFSGF--DDNLKVYSWEPVICHDS 262 (1074)
Q Consensus 226 -~~~ItsIafSPDG~~LasGs--d~~I~Vwd~~s~~~~~~ 262 (1074)
...+....|++++.+|++|+ |+.|++|++........
T Consensus 258 ~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~ 297 (493)
T PTZ00421 258 QSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFC 297 (493)
T ss_pred CCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEE
Confidence 34466678999999988764 77899999987765443
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.7e-24 Score=236.23 Aligned_cols=278 Identities=24% Similarity=0.443 Sum_probs=238.7
Q ss_pred ecCCCCEEEEEEecCCCcEEEEEECCCeEEEEECCCCceEEEeeCCCCCeEEEEEcCCC---CEEEEEEcCCeEEEEEcC
Q 001462 12 VAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAE---VLVLAGASTGVIKLWDLE 88 (1074)
Q Consensus 12 ~gHs~~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~k~l~sl~~hs~~ItsLafSpdg---~~LatGs~DG~I~VWDl~ 88 (1074)
.-|.+.|.+|...+ .++++|++||.+++||. .|+....+.+|.++|..++|.... ..|++++.|.++++|.++
T Consensus 102 ~~hdDWVSsv~~~~---~~IltgsYDg~~riWd~-~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~ 177 (423)
T KOG0313|consen 102 FLHDDWVSSVKGAS---KWILTGSYDGTSRIWDL-KGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWN 177 (423)
T ss_pred ccchhhhhhhcccC---ceEEEeecCCeeEEEec-CCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEec
Confidence 35888999998873 68999999999999996 788899999999999999886433 359999999999999998
Q ss_pred CCeeE----EEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC-------------------------CCeEEEEEe
Q 001462 89 ESKMV----RTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIR-------------------------KKGCIHTYK 139 (1074)
Q Consensus 89 tgk~i----~tl~~h~~~VtsLafSPdg~~LaSgS~DGsI~IWDi~-------------------------tg~~v~~l~ 139 (1074)
.+... ..-.+|...|.++...++|..|++|+.|..|.||+.. .+.++..+.
T Consensus 178 ~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~ 257 (423)
T KOG0313|consen 178 VGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLE 257 (423)
T ss_pred CchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEec
Confidence 76532 3334899999999999999999999999999999932 123456678
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeeecCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCCc--
Q 001462 140 GHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFE-- 217 (1074)
Q Consensus 140 ~h~~~VtsLafSPdG~~LaSgs~DGsI~VWDl~tgk~v~~~~~h~g~ItsLafSPdg~lLaTGS~DGtI~IWDl~tg~-- 217 (1074)
+|..+|.++.|++ ...+++++.|.+|+.||+.++..+..+.+ ...+.++.++|..++|++|+.|..|++||.+++.
T Consensus 258 GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~-~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs 335 (423)
T KOG0313|consen 258 GHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTT-NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGS 335 (423)
T ss_pred ccccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeec-CcceeEeecccccceeeecCCCCceeecCCCCCCCc
Confidence 9999999999998 56799999999999999999999888874 5679999999999999999999999999999754
Q ss_pred -EEEeeCCCCCCeEEEEEecCCCEEEE-E-ECCcEEEEEecCCe-eeeccccCCceeeEEEecCCCEEEEEECCCeEEEE
Q 001462 218 -LIGSTRPEVTGVHAITFHPDGRTLFS-G-FDDNLKVYSWEPVI-CHDSVDMGWSTLGDLCINDGKLLGCSFYRNSVGIW 293 (1074)
Q Consensus 218 -~i~t~~~~~~~ItsIafSPDG~~Las-G-sd~~I~Vwd~~s~~-~~~~l~~~~s~~~~l~spDGklLAsgs~DGsV~IW 293 (1074)
....+.+|...|.++.|+|...++++ | .|+.+++||.+... ....+..++..+-.+-+.++.++++|+.|++|+|+
T Consensus 336 ~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~~~~IvSGGaD~~l~i~ 415 (423)
T KOG0313|consen 336 VVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNEGGLIVSGGADNKLRIF 415 (423)
T ss_pred eeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEeccCCceEEeccCcceEEEe
Confidence 35678899999999999998777665 4 68889999999866 66667777787777888899999999999999999
Q ss_pred Ec
Q 001462 294 VA 295 (1074)
Q Consensus 294 Dl 295 (1074)
..
T Consensus 416 ~~ 417 (423)
T KOG0313|consen 416 KG 417 (423)
T ss_pred cc
Confidence 54
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=4e-24 Score=255.44 Aligned_cols=278 Identities=26% Similarity=0.458 Sum_probs=244.0
Q ss_pred CCCCEEEEEEecCCCcEEEEEECCCeEEEEECCCCceEEE-eeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCCee
Q 001462 14 HSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMS-LCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKM 92 (1074)
Q Consensus 14 Hs~~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~k~l~s-l~~hs~~ItsLafSpdg~~LatGs~DG~I~VWDl~tgk~ 92 (1074)
|...|.|..|+ + .++++++.|.+|++||...+..+.. +.+|.+.|++++|..-+.+|++|+.|.++++||..+|++
T Consensus 207 ~~~~~~~~q~~-~--~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C 283 (537)
T KOG0274|consen 207 DDHVVLCLQLH-D--GFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGEC 283 (537)
T ss_pred Ccchhhhheee-c--CeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcE
Confidence 56788999998 3 3799999999999999999988888 999999999999988788999999999999999999999
Q ss_pred EEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC
Q 001462 93 VRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLT 172 (1074)
Q Consensus 93 i~tl~~h~~~VtsLafSPdg~~LaSgS~DGsI~IWDi~tg~~v~~l~~h~~~VtsLafSPdG~~LaSgs~DGsI~VWDl~ 172 (1074)
.+.+.+|.+.|.++... +.++++|+.|.+|++|++.++.+++.+.+|..+|.++.++ +.++++|+.||.|++||+.
T Consensus 284 ~~~l~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~ 359 (537)
T KOG0274|consen 284 THSLQGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPR 359 (537)
T ss_pred EEEecCCCceEEEEEcc--CceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhh
Confidence 99999999999998876 5668888999999999999999999999999999999997 7899999999999999999
Q ss_pred CCceEEEeeecCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCC-cEEEeeCCCCCCeEEEEEecCCCEEEEE-ECCcEE
Q 001462 173 AGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETF-ELIGSTRPEVTGVHAITFHPDGRTLFSG-FDDNLK 250 (1074)
Q Consensus 173 tgk~v~~~~~h~g~ItsLafSPdg~lLaTGS~DGtI~IWDl~tg-~~i~t~~~~~~~ItsIafSPDG~~LasG-sd~~I~ 250 (1074)
++++++.+.+|.+.|.++.+... ..+++|+.|++|++||+.+. +++..+..|..-+.++.+ .+++|+++ .|+.|+
T Consensus 360 ~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD~~Ik 436 (537)
T KOG0274|consen 360 TGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLL--RDNFLVSSSADGTIK 436 (537)
T ss_pred hceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCccccccccc--ccceeEeccccccEE
Confidence 99999999999999999988755 89999999999999999999 999999999887766554 45677775 677899
Q ss_pred EEEecCCeeeeccccCCceeeEEEecC-CCEEEEEECCCeEEEEEcCCCceee
Q 001462 251 VYSWEPVICHDSVDMGWSTLGDLCIND-GKLLGCSFYRNSVGIWVADVSHVEP 302 (1074)
Q Consensus 251 Vwd~~s~~~~~~l~~~~s~~~~l~spD-GklLAsgs~DGsV~IWDld~~~l~~ 302 (1074)
+||...+.+...+... ......+... ...+++++.||.+++||+..+....
T Consensus 437 ~WD~~~~~~~~~~~~~-~~~~v~~l~~~~~~il~s~~~~~~~l~dl~~~~~~~ 488 (537)
T KOG0274|consen 437 LWDAEEGECLRTLEGR-HVGGVSALALGKEEILCSSDDGSVKLWDLRSGTLIR 488 (537)
T ss_pred EeecccCceeeeeccC-CcccEEEeecCcceEEEEecCCeeEEEecccCchhh
Confidence 9999999998888774 2122222223 4778888999999999997665543
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.2e-24 Score=238.43 Aligned_cols=278 Identities=22% Similarity=0.360 Sum_probs=242.2
Q ss_pred CCEEEEEEecCCCcEEEEEECCCeEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeeEEE
Q 001462 16 ANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRT 95 (1074)
Q Consensus 16 ~~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~k~l~sl~~hs~~ItsLafSpdg~~LatGs~DG~I~VWDl~tgk~i~t 95 (1074)
-.|.++...+.. ..+++|+.|..+.++|....+.+..+.+|...|+.+.|+++...+++++.|..|+||..........
T Consensus 220 pgi~ald~~~s~-~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~ 298 (506)
T KOG0289|consen 220 PGITALDIIPSS-SKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTS 298 (506)
T ss_pred CCeeEEeecCCC-CcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccc
Confidence 468888888873 6899999999999999999999999999999999999999999999999999999999988777788
Q ss_pred EeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeC--CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC
Q 001462 96 LTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKG--HTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTA 173 (1074)
Q Consensus 96 l~~h~~~VtsLafSPdg~~LaSgS~DGsI~IWDi~tg~~v~~l~~--h~~~VtsLafSPdG~~LaSgs~DGsI~VWDl~t 173 (1074)
...|.++|+.+..+|.|.||++++.||+..+.|++++..+..... ..-.+++.+|+|||.+|.+|..||.|+|||+..
T Consensus 299 ~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks 378 (506)
T KOG0289|consen 299 SRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKS 378 (506)
T ss_pred cccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCC
Confidence 889999999999999999999999999999999999998776653 234589999999999999999999999999999
Q ss_pred CceEEEeeecCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCCcEEEeeCCC-CCCeEEEEEecCCCEEEEEECCcEEEE
Q 001462 174 GKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPE-VTGVHAITFHPDGRTLFSGFDDNLKVY 252 (1074)
Q Consensus 174 gk~v~~~~~h~g~ItsLafSPdg~lLaTGS~DGtI~IWDl~tg~~i~t~~~~-~~~ItsIafSPDG~~LasGsd~~I~Vw 252 (1074)
+..+..|.+|.++|..++|+.+|.||++++.|+.|++||++..+...++... ..++.++.|.+.|.+|+.+ ...++||
T Consensus 379 ~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~-g~~l~Vy 457 (506)
T KOG0289|consen 379 QTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIA-GSDLQVY 457 (506)
T ss_pred ccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEee-cceeEEE
Confidence 9999999999999999999999999999999999999999988777666543 3469999999999999998 4456777
Q ss_pred Eec----CCeeeeccccCCcee-eEEEecCCCEEEEEECCCeEEEEEc
Q 001462 253 SWE----PVICHDSVDMGWSTL-GDLCINDGKLLGCSFYRNSVGIWVA 295 (1074)
Q Consensus 253 d~~----s~~~~~~l~~~~s~~-~~l~spDGklLAsgs~DGsV~IWDl 295 (1074)
.+. .+.+...+..+.... +..|..+.+++++++.|..++++.+
T Consensus 458 ~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 458 ICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred EEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence 776 555555555544333 3444467899999999998888743
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.4e-24 Score=249.06 Aligned_cols=273 Identities=24% Similarity=0.375 Sum_probs=235.6
Q ss_pred EEEEEecCCCcEEEEEECCCeEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeeEEEEeC
Q 001462 19 NCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTG 98 (1074)
Q Consensus 19 t~IafSPdg~~lLaTGs~DGtV~IWDl~t~k~l~sl~~hs~~ItsLafSpdg~~LatGs~DG~I~VWDl~tgk~i~tl~~ 98 (1074)
+-+.|+..+ .|++|.. ..|++|+..++........+...|+++.|+++|.+|++|..+|.|.|||....+.+..+.+
T Consensus 181 nlldWss~n--~laValg-~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~ 257 (484)
T KOG0305|consen 181 NLLDWSSAN--VLAVALG-QSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRG 257 (484)
T ss_pred hHhhcccCC--eEEEEec-ceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccC
Confidence 345677554 6666654 5799999988886555555589999999999999999999999999999999999999988
Q ss_pred -CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEE-EeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCce
Q 001462 99 -HKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHT-YKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKL 176 (1074)
Q Consensus 99 -h~~~VtsLafSPdg~~LaSgS~DGsI~IWDi~tg~~v~~-l~~h~~~VtsLafSPdG~~LaSgs~DGsI~VWDl~tgk~ 176 (1074)
|...|-+++|. +..+.+|+.||.|.++|++..+.... +.+|...|..++|++|+.+|++|+.|+.+.|||.....+
T Consensus 258 ~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p 335 (484)
T KOG0305|consen 258 SHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEP 335 (484)
T ss_pred CcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccc
Confidence 99999999999 77899999999999999998775544 788999999999999999999999999999999988889
Q ss_pred EEEeeecCCCeEEEEEcCC-CcEEEEEe--CCCeEEEEECCCCcEEEeeCCCCCCeEEEEEecCCCEEEEE---ECCcEE
Q 001462 177 LHDFKFHEGHIRSIDFHPL-EFLLATGS--ADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSG---FDDNLK 250 (1074)
Q Consensus 177 v~~~~~h~g~ItsLafSPd-g~lLaTGS--~DGtI~IWDl~tg~~i~t~~~~~~~ItsIafSPDG~~LasG---sd~~I~ 250 (1074)
...+..|.+.|.+++|+|. ..+||+|+ .|+.|++||..++..+..+.. ...|.++.|++..+.|+++ .++.|.
T Consensus 336 ~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdt-gsQVcsL~Wsk~~kEi~sthG~s~n~i~ 414 (484)
T KOG0305|consen 336 KFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDT-GSQVCSLIWSKKYKELLSTHGYSENQIT 414 (484)
T ss_pred cEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEeccccc-CCceeeEEEcCCCCEEEEecCCCCCcEE
Confidence 9999999999999999995 67888876 699999999999998877654 4779999999999888875 356699
Q ss_pred EEEecCCeeeeccccC-CceeeEEEecCCCEEEEEECCCeEEEEEcCC
Q 001462 251 VYSWEPVICHDSVDMG-WSTLGDLCINDGKLLGCSFYRNSVGIWVADV 297 (1074)
Q Consensus 251 Vwd~~s~~~~~~l~~~-~s~~~~l~spDGklLAsgs~DGsV~IWDld~ 297 (1074)
||++.+......+..+ ..++...++|||..+++|+.|.++++|++-.
T Consensus 415 lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~ 462 (484)
T KOG0305|consen 415 LWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFD 462 (484)
T ss_pred EEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccC
Confidence 9999887766655444 4566777889999999999999999998754
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.1e-23 Score=222.84 Aligned_cols=294 Identities=15% Similarity=0.207 Sum_probs=246.0
Q ss_pred EeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeeEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC
Q 001462 53 SLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKK 132 (1074)
Q Consensus 53 sl~~hs~~ItsLafSpdg~~LatGs~DG~I~VWDl~tgk~i~tl~~h~~~VtsLafSPdg~~LaSgS~DGsI~IWDi~tg 132 (1074)
.+.+|..+++.+.|+.+|.+|++++.|....||-..+|+.+.++.+|.+.|+|+...-+.+++++|+.|.++++||+.+|
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tG 84 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETG 84 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEeCCCCCeEEEEEcCCCCEEEEEEC-----CCeEEEEECC-------CCceEEEeeecCCCeEEEEEcCCCcEEE
Q 001462 133 GCIHTYKGHTRGINTIRFTPDGRWVVSGGF-----DNVVKVWDLT-------AGKLLHDFKFHEGHIRSIDFHPLEFLLA 200 (1074)
Q Consensus 133 ~~v~~l~~h~~~VtsLafSPdG~~LaSgs~-----DGsI~VWDl~-------tgk~v~~~~~h~g~ItsLafSPdg~lLa 200 (1074)
+++..++ ...+|..+.|+.+|++++.... .+.|.++|++ ..++...+..+...++.+.|.|-+.+|+
T Consensus 85 k~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii 163 (327)
T KOG0643|consen 85 KQLATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETII 163 (327)
T ss_pred cEEEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEE
Confidence 9999998 5678999999999998877653 4689999998 3456777888899999999999999999
Q ss_pred EEeCCCeEEEEECCCCcE-EEeeCCCCCCeEEEEEecCCCEEEEEE-CCcEEEEEecCCeeeeccccCCceeeEEEecCC
Q 001462 201 TGSADRTVKFWDLETFEL-IGSTRPEVTGVHAITFHPDGRTLFSGF-DDNLKVYSWEPVICHDSVDMGWSTLGDLCINDG 278 (1074)
Q Consensus 201 TGS~DGtI~IWDl~tg~~-i~t~~~~~~~ItsIafSPDG~~LasGs-d~~I~Vwd~~s~~~~~~l~~~~s~~~~l~spDG 278 (1074)
+|..||.|.+||++++.. +.....|...|+.++|++|..++++++ |.+-++||..+..+.+.+...........+|--
T Consensus 164 ~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~aaisP~~ 243 (327)
T KOG0643|consen 164 AGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTAAISPLL 243 (327)
T ss_pred EecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeeecccccceeccccc
Confidence 999999999999999854 555577888999999999999999975 556899999999999999888777788888877
Q ss_pred CEEEEEECCCeEEEE--EcCCCcee--------eeecCCCCCCCCceeEEEEcCCCCcceeEEEEEeccCcceEEeecCC
Q 001462 279 KLLGCSFYRNSVGIW--VADVSHVE--------PYGVGAPEPDQSICTEVKFNPPGSHSLEKVGIIGRSTSGFRSTSPDY 348 (1074)
Q Consensus 279 klLAsgs~DGsV~IW--Dld~~~l~--------~~~~~~~~~~~~~ItsVaFSPDGs~~Lv~vlavG~stG~~r~ivpD~ 348 (1074)
..+++|+.....-|= ....++.+ .-.++...+|-++|++|+|+|||+ .-+.|...|+.|...-+.
T Consensus 244 d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGk-----sYsSGGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 244 DHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGK-----SYSSGGEDGYVRLHHFDS 318 (327)
T ss_pred ceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCc-----ccccCCCCceEEEEEecc
Confidence 777776543222221 11112111 112334478999999999999999 778888888888887764
Q ss_pred cccc
Q 001462 349 ETKD 352 (1074)
Q Consensus 349 et~e 352 (1074)
.-.+
T Consensus 319 ~YF~ 322 (327)
T KOG0643|consen 319 NYFD 322 (327)
T ss_pred chhh
Confidence 4333
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.5e-23 Score=246.35 Aligned_cols=261 Identities=18% Similarity=0.204 Sum_probs=199.9
Q ss_pred CeEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeeE-------------EEEeCCCCCeEEEEEcC-CCCEEEEEECCCeEE
Q 001462 60 PVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMV-------------RTLTGHKSNCTAVEFHP-FGEFFASGCMDTNLK 125 (1074)
Q Consensus 60 ~ItsLafSpdg~~LatGs~DG~I~VWDl~tgk~i-------------~tl~~h~~~VtsLafSP-dg~~LaSgS~DGsI~ 125 (1074)
.|....+++++..+++++.+.....|+...+..+ ..+.+|.+.|.+++|+| ++++|++|+.||.|+
T Consensus 22 ~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIk 101 (493)
T PTZ00421 22 NVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIM 101 (493)
T ss_pred ccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEE
Confidence 3444455556555566555555556654433221 24678999999999999 788999999999999
Q ss_pred EEECCCC-------eEEEEEeCCCCCeEEEEEcCCC-CEEEEEECCCeEEEEECCCCceEEEeeecCCCeEEEEEcCCCc
Q 001462 126 IWDIRKK-------GCIHTYKGHTRGINTIRFTPDG-RWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEF 197 (1074)
Q Consensus 126 IWDi~tg-------~~v~~l~~h~~~VtsLafSPdG-~~LaSgs~DGsI~VWDl~tgk~v~~~~~h~g~ItsLafSPdg~ 197 (1074)
+||+..+ ..+..+.+|...|.+++|+|++ .+|++|+.|+.|++||+.+++.+..+..|...|.+++|+|+|.
T Consensus 102 IWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~ 181 (493)
T PTZ00421 102 GWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGS 181 (493)
T ss_pred EEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCC
Confidence 9999765 3467788999999999999975 6899999999999999999999999999999999999999999
Q ss_pred EEEEEeCCCeEEEEECCCCcEEEeeCCCCCC-eEEEEEecCCCEEEEEE-----CCcEEEEEecCCe-eeeccc--cCCc
Q 001462 198 LLATGSADRTVKFWDLETFELIGSTRPEVTG-VHAITFHPDGRTLFSGF-----DDNLKVYSWEPVI-CHDSVD--MGWS 268 (1074)
Q Consensus 198 lLaTGS~DGtI~IWDl~tg~~i~t~~~~~~~-ItsIafSPDG~~LasGs-----d~~I~Vwd~~s~~-~~~~l~--~~~s 268 (1074)
+|++++.||.|++||+++++.+..+..|.+. +..+.|.+++..+++++ ++.|++||+.... ...... ....
T Consensus 182 lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~ 261 (493)
T PTZ00421 182 LLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSA 261 (493)
T ss_pred EEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCc
Confidence 9999999999999999999998888887654 45778999887777632 5679999997643 222222 2223
Q ss_pred eeeEEEecCCCEEEEEE-CCCeEEEEEcCCCceeeeecCCCCCCCCceeEEEEcCC
Q 001462 269 TLGDLCINDGKLLGCSF-YRNSVGIWVADVSHVEPYGVGAPEPDQSICTEVKFNPP 323 (1074)
Q Consensus 269 ~~~~l~spDGklLAsgs-~DGsV~IWDld~~~l~~~~~~~~~~~~~~ItsVaFSPD 323 (1074)
.....+.+|+++|++++ .||.|++||+..+....... .........++|.|.
T Consensus 262 ~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~---~~s~~~~~g~~~~pk 314 (493)
T PTZ00421 262 LFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSS---YSSVEPHKGLCMMPK 314 (493)
T ss_pred eEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEee---ccCCCCCcceEeccc
Confidence 33445668999998887 59999999998766443321 233455677778873
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.2e-24 Score=241.88 Aligned_cols=279 Identities=23% Similarity=0.332 Sum_probs=243.4
Q ss_pred CCCCEEEEEEecCCCcEEEEEECCCeEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeeE
Q 001462 14 HSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMV 93 (1074)
Q Consensus 14 Hs~~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~k~l~sl~~hs~~ItsLafSpdg~~LatGs~DG~I~VWDl~tgk~i 93 (1074)
..+.|.+|+|+|..+.-+|+.+. -.+.||+..+......+..+...+++++|..||++|++|...|.|+|||..+...+
T Consensus 25 e~~~vssl~fsp~~P~d~aVt~S-~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iL 103 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHPYDFAVTSS-VRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVIL 103 (487)
T ss_pred ccCcceeEecCCCCCCceEEecc-cEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHH
Confidence 34789999999977665666554 46999999888777778888899999999999999999999999999997776678
Q ss_pred EEEeCCCCCeEEEEEcCCCC-EEEEEECCCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCC-CCEEEEEECCCeEEEEEC
Q 001462 94 RTLTGHKSNCTAVEFHPFGE-FFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPD-GRWVVSGGFDNVVKVWDL 171 (1074)
Q Consensus 94 ~tl~~h~~~VtsLafSPdg~-~LaSgS~DGsI~IWDi~tg~~v~~l~~h~~~VtsLafSPd-G~~LaSgs~DGsI~VWDl 171 (1074)
+.+..|..++..+.|+|+++ .|++|+.|+.+++||+.+......+.+|.+.|.|.+|+|. +..+++|+.||.|++||+
T Consensus 104 R~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~Dt 183 (487)
T KOG0310|consen 104 RQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDT 183 (487)
T ss_pred HHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEe
Confidence 88899999999999999765 6778888899999999988876688999999999999995 457899999999999999
Q ss_pred CCC-ceEEEeeecCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCC-cEEEeeCCCCCCeEEEEEecCCCEEEEE-ECCc
Q 001462 172 TAG-KLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETF-ELIGSTRPEVTGVHAITFHPDGRTLFSG-FDDN 248 (1074)
Q Consensus 172 ~tg-k~v~~~~~h~g~ItsLafSPdg~lLaTGS~DGtI~IWDl~tg-~~i~t~~~~~~~ItsIafSPDG~~LasG-sd~~ 248 (1074)
+.. ..+.++. |..+|-.+.+-|.|..+++++. ..|++||+.+| +.+..+..|...|+|+.+..++..|++| -|+.
T Consensus 184 R~~~~~v~eln-hg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~ 261 (487)
T KOG0310|consen 184 RSLTSRVVELN-HGCPVESVLALPSGSLIASAGG-NSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRH 261 (487)
T ss_pred ccCCceeEEec-CCCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccc
Confidence 987 6677776 8899999999999999999885 68999999955 5555566699999999999999888885 6888
Q ss_pred EEEEEecCCeeeeccccCCceeeEEEecCCCEEEEEECCCeEEEEEc
Q 001462 249 LKVYSWEPVICHDSVDMGWSTLGDLCINDGKLLGCSFYRNSVGIWVA 295 (1074)
Q Consensus 249 I~Vwd~~s~~~~~~l~~~~s~~~~l~spDGklLAsgs~DGsV~IWDl 295 (1074)
+++|+....+..........++.+..+||++.++.|..+|.+.+-+.
T Consensus 262 VKVfd~t~~Kvv~s~~~~~pvLsiavs~dd~t~viGmsnGlv~~rr~ 308 (487)
T KOG0310|consen 262 VKVFDTTNYKVVHSWKYPGPVLSIAVSPDDQTVVIGMSNGLVSIRRR 308 (487)
T ss_pred eEEEEccceEEEEeeecccceeeEEecCCCceEEEecccceeeeehh
Confidence 99999999999999999999999999999999999999998877643
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.2e-26 Score=244.83 Aligned_cols=242 Identities=24% Similarity=0.493 Sum_probs=212.7
Q ss_pred CceEEEEecCCCCEEEEEEecCCCcEEEEEECCCeEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEE
Q 001462 5 GYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKL 84 (1074)
Q Consensus 5 G~~v~~L~gHs~~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~k~l~sl~~hs~~ItsLafSpdg~~LatGs~DG~I~V 84 (1074)
-.+++.+.||++.|.|+.|.. ++|++|+.|.+|++||+++++.+.++..|...|..+.|+ ..++++++.|..|.+
T Consensus 227 ~~c~~~L~GHtGSVLCLqyd~---rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~--ng~mvtcSkDrsiaV 301 (499)
T KOG0281|consen 227 LECLKILTGHTGSVLCLQYDE---RVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAV 301 (499)
T ss_pred HHHHHhhhcCCCcEEeeeccc---eEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEe--CCEEEEecCCceeEE
Confidence 345677899999999999975 689999999999999999999999999999999999997 458999999999999
Q ss_pred EEcCCCe---eEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEE
Q 001462 85 WDLEESK---MVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGG 161 (1074)
Q Consensus 85 WDl~tgk---~i~tl~~h~~~VtsLafSPdg~~LaSgS~DGsI~IWDi~tg~~v~~l~~h~~~VtsLafSPdG~~LaSgs 161 (1074)
||+.... +.+.+.+|...|..+.|+ .+++++++.|.+|++|++.++.++..+.+|..+|.|+.+. |+++++|+
T Consensus 302 Wdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQYr--~rlvVSGS 377 (499)
T KOG0281|consen 302 WDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGS 377 (499)
T ss_pred EeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEeccceeeehhhhcccccceehhcc--CeEEEecC
Confidence 9997653 335567899999999997 6799999999999999999999999999999999999884 88999999
Q ss_pred CCCeEEEEECCCCceEEEeeecCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCCc---------EEEeeCCCCCCeEEE
Q 001462 162 FDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFE---------LIGSTRPEVTGVHAI 232 (1074)
Q Consensus 162 ~DGsI~VWDl~tgk~v~~~~~h~g~ItsLafSPdg~lLaTGS~DGtI~IWDl~tg~---------~i~t~~~~~~~ItsI 232 (1074)
.|.+|++||+..|.++..+++|+.-|.++.|. .+.+++|+.||+|++||+..+. ++..+..|.+.|-.+
T Consensus 378 SDntIRlwdi~~G~cLRvLeGHEeLvRciRFd--~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrL 455 (499)
T KOG0281|consen 378 SDNTIRLWDIECGACLRVLEGHEELVRCIRFD--NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRL 455 (499)
T ss_pred CCceEEEEeccccHHHHHHhchHHhhhheeec--CceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEE
Confidence 99999999999999999999999999999995 6789999999999999998754 334455677889999
Q ss_pred EEecCCCEEEEEECCcEEEEEecCCe
Q 001462 233 TFHPDGRTLFSGFDDNLKVYSWEPVI 258 (1074)
Q Consensus 233 afSPDG~~LasGsd~~I~Vwd~~s~~ 258 (1074)
.|.. -+.+.+..++.|.|||+..+.
T Consensus 456 QFD~-fqIvsssHddtILiWdFl~~~ 480 (499)
T KOG0281|consen 456 QFDE-FQIISSSHDDTILIWDFLNGP 480 (499)
T ss_pred eecc-eEEEeccCCCeEEEEEcCCCC
Confidence 9863 244555688899999997654
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.8e-22 Score=218.38 Aligned_cols=284 Identities=16% Similarity=0.170 Sum_probs=217.2
Q ss_pred cEEEEEECCCeEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEE-EEEEcCCeEEEEEcCCCeeEEEEeCCCCCeEEEE
Q 001462 29 RFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLV-LAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVE 107 (1074)
Q Consensus 29 ~lLaTGs~DGtV~IWDl~t~k~l~sl~~hs~~ItsLafSpdg~~L-atGs~DG~I~VWDl~tgk~i~tl~~h~~~VtsLa 107 (1074)
.++++++.||.|++||+.+++.+..+..+. .+.+++|+|++..+ ++++.++.|.+||..+++....+..+. .+..++
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~ 79 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEVTRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGP-DPELFA 79 (300)
T ss_pred cEEEEecCCCEEEEEECCCCceEEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCC-CccEEE
Confidence 578899999999999999888888887654 46789999999876 456678999999999988877776543 356789
Q ss_pred EcCCCCEEEEE-ECCCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCC-eEEEEECCCCceEEEeeecCC
Q 001462 108 FHPFGEFFASG-CMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDN-VVKVWDLTAGKLLHDFKFHEG 185 (1074)
Q Consensus 108 fSPdg~~LaSg-S~DGsI~IWDi~tg~~v~~l~~h~~~VtsLafSPdG~~LaSgs~DG-sI~VWDl~tgk~v~~~~~h~g 185 (1074)
|+|+++.++++ +.++.|++||+.++..+..+.. ...+.+++|+|+|.+++++..++ .+.+||..+++....+.. ..
T Consensus 80 ~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~-~~ 157 (300)
T TIGR03866 80 LHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLV-DQ 157 (300)
T ss_pred ECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEc-CC
Confidence 99999977665 4589999999998887777763 33468899999999999888765 567789988877665542 34
Q ss_pred CeEEEEEcCCCcEEEEEe-CCCeEEEEECCCCcEEEeeCCCC-------CCeEEEEEecCCCEEEEE--ECCcEEEEEec
Q 001462 186 HIRSIDFHPLEFLLATGS-ADRTVKFWDLETFELIGSTRPEV-------TGVHAITFHPDGRTLFSG--FDDNLKVYSWE 255 (1074)
Q Consensus 186 ~ItsLafSPdg~lLaTGS-~DGtI~IWDl~tg~~i~t~~~~~-------~~ItsIafSPDG~~LasG--sd~~I~Vwd~~ 255 (1074)
.+.+++|+|++.+|++++ .++.|++||+.+++.+..+..+. .....++|+|+|++++++ .++.+.+||.+
T Consensus 158 ~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~ 237 (300)
T TIGR03866 158 RPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAK 237 (300)
T ss_pred CccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECC
Confidence 467899999999886554 68999999999988766553221 123568899999986653 45679999998
Q ss_pred CCeeeeccccCCceeeEEEecCCCEEEEEE-CCCeEEEEEcCCCce-eeeecCCCCCCCCceeEEEEcC
Q 001462 256 PVICHDSVDMGWSTLGDLCINDGKLLGCSF-YRNSVGIWVADVSHV-EPYGVGAPEPDQSICTEVKFNP 322 (1074)
Q Consensus 256 s~~~~~~l~~~~s~~~~l~spDGklLAsgs-~DGsV~IWDld~~~l-~~~~~~~~~~~~~~ItsVaFSP 322 (1074)
.......+..+..+....+.++|++|+++. .+|.|.|||+..... ..+.. ......++|+|
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~------~~~~~~~~~~~ 300 (300)
T TIGR03866 238 TYEVLDYLLVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKV------GRLPWGVVVRP 300 (300)
T ss_pred CCcEEEEEEeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEc------ccccceeEeCC
Confidence 777665554455566777889999998864 689999999987764 33332 34456777765
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.2e-24 Score=228.18 Aligned_cols=286 Identities=19% Similarity=0.297 Sum_probs=251.2
Q ss_pred EEEEecCCCCEEEEEEec---CCCcEEEEEECCCeEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEE
Q 001462 8 LQEFVAHSANVNCISIGK---KACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKL 84 (1074)
Q Consensus 8 v~~L~gHs~~Vt~IafSP---dg~~lLaTGs~DGtV~IWDl~t~k~l~sl~~hs~~ItsLafSpdg~~LatGs~DG~I~V 84 (1074)
.....||+.+|..++|+| +| .+|++++.||.-.|-+-.+|.-+-++.+|.+.|+...++.|....++++.|-+-+|
T Consensus 7 pl~c~ghtrpvvdl~~s~itp~g-~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakv 85 (334)
T KOG0278|consen 7 PLTCHGHTRPVVDLAFSPITPDG-YFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKV 85 (334)
T ss_pred ceEEcCCCcceeEEeccCCCCCc-eEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhh
Confidence 345789999999999986 66 89999999999999888899999999999999999999999888899999999999
Q ss_pred EEcCCCeeEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCe-EEEEEeCCCCCeEEEEEcCCCCEEEEEECC
Q 001462 85 WDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKG-CIHTYKGHTRGINTIRFTPDGRWVVSGGFD 163 (1074)
Q Consensus 85 WDl~tgk~i~tl~~h~~~VtsLafSPdg~~LaSgS~DGsI~IWDi~tg~-~v~~l~~h~~~VtsLafSPdG~~LaSgs~D 163 (1074)
||.-+|..+..+. |...|.+++|+.|.++|++|+.+..++|||++..+ +...+.+|.+.|..+.|....+.|+++..|
T Consensus 86 w~a~tgdelhsf~-hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd 164 (334)
T KOG0278|consen 86 WDAVTGDELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADD 164 (334)
T ss_pred hhhhhhhhhhhhh-hhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccC
Confidence 9999999999887 89999999999999999999999999999997654 567788999999999999988899999999
Q ss_pred CeEEEEECCCCceEEEeeecCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCCcEEEeeCCCCCCeEEEEEecCCCEEEE
Q 001462 164 NVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFS 243 (1074)
Q Consensus 164 GsI~VWDl~tgk~v~~~~~h~g~ItsLafSPdg~lLaTGS~DGtI~IWDl~tg~~i~t~~~~~~~ItsIafSPDG~~Las 243 (1074)
+.|++||.+++..++.+. ...+|.++.++++|.+|.++. .+.|.+||..+...++.+... ..|.+..++|+..++++
T Consensus 165 ~tVRLWD~rTgt~v~sL~-~~s~VtSlEvs~dG~ilTia~-gssV~Fwdaksf~~lKs~k~P-~nV~SASL~P~k~~fVa 241 (334)
T KOG0278|consen 165 KTVRLWDHRTGTEVQSLE-FNSPVTSLEVSQDGRILTIAY-GSSVKFWDAKSFGLLKSYKMP-CNVESASLHPKKEFFVA 241 (334)
T ss_pred CceEEEEeccCcEEEEEe-cCCCCcceeeccCCCEEEEec-CceeEEeccccccceeeccCc-cccccccccCCCceEEe
Confidence 999999999999999988 467899999999999887765 578999999999998887654 56889999999888887
Q ss_pred EE-CCcEEEEEecCCeeeecc-cc-CCceeeEEEecCCCEEEEEECCCeEEEEEcCCC
Q 001462 244 GF-DDNLKVYSWEPVICHDSV-DM-GWSTLGDLCINDGKLLGCSFYRNSVGIWVADVS 298 (1074)
Q Consensus 244 Gs-d~~I~Vwd~~s~~~~~~l-~~-~~s~~~~l~spDGklLAsgs~DGsV~IWDld~~ 298 (1074)
|. +..++.||+.++.....+ .. ...+.+..|+|||...++|+.||+|+||....+
T Consensus 242 Gged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~ 299 (334)
T KOG0278|consen 242 GGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPG 299 (334)
T ss_pred cCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCC
Confidence 65 456889999998877664 33 345566677899999999999999999976443
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.5e-25 Score=240.26 Aligned_cols=282 Identities=16% Similarity=0.328 Sum_probs=241.1
Q ss_pred EEEEecCCCCEEEEEEecCCCcEEEEEECCCeEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEc
Q 001462 8 LQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDL 87 (1074)
Q Consensus 8 v~~L~gHs~~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~k~l~sl~~hs~~ItsLafSpdg~~LatGs~DG~I~VWDl 87 (1074)
+..|.||.+.|.|++=+|..-..+++|+.||.|+|||+....++..+..|.+.|..+++.. ..+++++.|.+|+.|.+
T Consensus 59 v~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~ 136 (433)
T KOG0268|consen 59 VGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKI 136 (433)
T ss_pred hhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeec
Confidence 4568999999999999998756799999999999999999999999999999999999987 56788889999999998
Q ss_pred CCCeeEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCC-EEEEEECCCeE
Q 001462 88 EESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGR-WVVSGGFDNVV 166 (1074)
Q Consensus 88 ~tgk~i~tl~~h~~~VtsLafSPdg~~LaSgS~DGsI~IWDi~tg~~v~~l~~h~~~VtsLafSPdG~-~LaSgs~DGsI 166 (1074)
+. .+.+++. ....+..+.-+..+..|++||. .|.|||.....++..+....+.|.++.|+|... .|++|+.|+.|
T Consensus 137 ~~-~p~~til-g~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsI 212 (433)
T KOG0268|consen 137 DG-PPLHTIL-GKSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSI 212 (433)
T ss_pred cC-Ccceeee-ccccccccccccccccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCce
Confidence 65 4666665 3556777887777888998864 599999998889999988888899999999554 66777799999
Q ss_pred EEEECCCCceEEEeeecCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCC-cEEEeeCCCCCCeEEEEEecCCCEEEEE-
Q 001462 167 KVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETF-ELIGSTRPEVTGVHAITFHPDGRTLFSG- 244 (1074)
Q Consensus 167 ~VWDl~tgk~v~~~~~h~g~ItsLafSPdg~lLaTGS~DGtI~IWDl~tg-~~i~t~~~~~~~ItsIafSPDG~~LasG- 244 (1074)
.+||++++.+++.+.. .-.-..|+|+|.+..+.+|+.|..++.||++.. ..+..+.+|...|.++.|+|.|+-+++|
T Consensus 213 vLyD~R~~~Pl~KVi~-~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~Efvsgs 291 (433)
T KOG0268|consen 213 VLYDLRQASPLKKVIL-TMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGS 291 (433)
T ss_pred EEEecccCCccceeee-eccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhcccc
Confidence 9999999998877652 344578999998888999999999999999875 4577788999999999999999999997
Q ss_pred ECCcEEEEEecCCeeeecccc--CCceeeEEEecCCCEEEEEECCCeEEEEEcC
Q 001462 245 FDDNLKVYSWEPVICHDSVDM--GWSTLGDLCINDGKLLGCSFYRNSVGIWVAD 296 (1074)
Q Consensus 245 sd~~I~Vwd~~s~~~~~~l~~--~~s~~~~l~spDGklLAsgs~DGsV~IWDld 296 (1074)
.|.+|+||..+.+.....+.. ...+++..|+.|.+|+++|+.|+.|++|...
T Consensus 292 yDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~ 345 (433)
T KOG0268|consen 292 YDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAK 345 (433)
T ss_pred ccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecc
Confidence 577899999988776665533 2467788899999999999999999999764
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.4e-23 Score=244.61 Aligned_cols=246 Identities=20% Similarity=0.304 Sum_probs=195.8
Q ss_pred EEcCCeEEEEEcCCCeeEEEEeCCCCCeEEEEEcCC-CCEEEEEECCCeEEEEECCCCe--------EEEEEeCCCCCeE
Q 001462 76 GASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPF-GEFFASGCMDTNLKIWDIRKKG--------CIHTYKGHTRGIN 146 (1074)
Q Consensus 76 Gs~DG~I~VWDl~tgk~i~tl~~h~~~VtsLafSPd-g~~LaSgS~DGsI~IWDi~tg~--------~v~~l~~h~~~Vt 146 (1074)
|+.+|.|.+|+......+..+.+|...|.+++|+|+ +++|++|+.||.|++||+.++. .+..+.+|...|.
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~ 129 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS 129 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE
Confidence 566789999998887888899999999999999997 7899999999999999997642 3446778999999
Q ss_pred EEEEcCCCCEE-EEEECCCeEEEEECCCCceEEEeeecCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCCcEEEeeCCC
Q 001462 147 TIRFTPDGRWV-VSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPE 225 (1074)
Q Consensus 147 sLafSPdG~~L-aSgs~DGsI~VWDl~tgk~v~~~~~h~g~ItsLafSPdg~lLaTGS~DGtI~IWDl~tg~~i~t~~~~ 225 (1074)
+++|+|++..+ ++++.|+.|++||+++++.+..+. |...|.+++|+|+|.+|++++.|+.|+|||+++++.+..+..|
T Consensus 130 sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH 208 (568)
T PTZ00420 130 IIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIH 208 (568)
T ss_pred EEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecc
Confidence 99999998764 688999999999999998887776 5678999999999999999999999999999999999999888
Q ss_pred CCCeEEE-----EEecCCCEEEEE-ECC----cEEEEEecC-Ceeeecccc--CCceeeEEEe-cCCCEEEEEECCCeEE
Q 001462 226 VTGVHAI-----TFHPDGRTLFSG-FDD----NLKVYSWEP-VICHDSVDM--GWSTLGDLCI-NDGKLLGCSFYRNSVG 291 (1074)
Q Consensus 226 ~~~ItsI-----afSPDG~~LasG-sd~----~I~Vwd~~s-~~~~~~l~~--~~s~~~~l~s-pDGklLAsgs~DGsV~ 291 (1074)
.+.+... .|++++.+|+++ .++ .|+|||++. ..+...+.. ....+...+. ++|.++++|..|+.|+
T Consensus 209 ~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr 288 (568)
T PTZ00420 209 DGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCR 288 (568)
T ss_pred cCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEE
Confidence 8765432 345888888874 443 599999985 333333322 2222223333 4688999999999999
Q ss_pred EEEcCCCceeeeecCCCCCCCCceeEEEEcCCCC
Q 001462 292 IWVADVSHVEPYGVGAPEPDQSICTEVKFNPPGS 325 (1074)
Q Consensus 292 IWDld~~~l~~~~~~~~~~~~~~ItsVaFSPDGs 325 (1074)
+|++..+.+..+.. ..+..+..+++|.|.-.
T Consensus 289 ~~e~~~~~~~~l~~---~~s~~p~~g~~f~Pkr~ 319 (568)
T PTZ00420 289 YYQHSLGSIRKVNE---YKSCSPFRSFGFLPKQI 319 (568)
T ss_pred EEEccCCcEEeecc---cccCCCccceEEccccc
Confidence 99997765444332 23556778889999544
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.8e-25 Score=235.72 Aligned_cols=265 Identities=20% Similarity=0.378 Sum_probs=226.2
Q ss_pred CCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeeEEEEe--------CCCCCeEEEEEcCCCCEEEEEECCCeEEEE
Q 001462 56 GLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLT--------GHKSNCTAVEFHPFGEFFASGCMDTNLKIW 127 (1074)
Q Consensus 56 ~hs~~ItsLafSpdg~~LatGs~DG~I~VWDl~tgk~i~tl~--------~h~~~VtsLafSPdg~~LaSgS~DGsI~IW 127 (1074)
+....+.|..|+|||+||++|+.||.|.+|+..+|+..+.++ -+...|.|+.|+.|...+++|+.||.|++|
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvW 290 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVW 290 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEE
Confidence 345668899999999999999999999999999998765443 467889999999999999999999999999
Q ss_pred ECCCCeEEEEEe-CCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeeecCCCeEEEEEcCCCcEEEEEeCCC
Q 001462 128 DIRKKGCIHTYK-GHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADR 206 (1074)
Q Consensus 128 Di~tg~~v~~l~-~h~~~VtsLafSPdG~~LaSgs~DGsI~VWDl~tgk~v~~~~~h~g~ItsLafSPdg~lLaTGS~DG 206 (1074)
.+.+|.|+..|. .|..+|+|+.|+.|+..+++++.|.++++.-+.+|+++++|++|.+.|+...|.++|..+++++.||
T Consensus 291 ri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDg 370 (508)
T KOG0275|consen 291 RIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDG 370 (508)
T ss_pred EEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCc
Confidence 999999999986 8999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEECCCCcEEEeeCCC--CCCeEEEEEecCC--CEEEEEECCcEEEEEecCCeeeecc----ccCCceeeEEEecCC
Q 001462 207 TVKFWDLETFELIGSTRPE--VTGVHAITFHPDG--RTLFSGFDDNLKVYSWEPVICHDSV----DMGWSTLGDLCINDG 278 (1074)
Q Consensus 207 tI~IWDl~tg~~i~t~~~~--~~~ItsIafSPDG--~~LasGsd~~I~Vwd~~s~~~~~~l----~~~~s~~~~l~spDG 278 (1074)
+|++|+.++.+++.++... ..+|.++..-|.+ .++++-..++++|.++..... ..+ ..+...+.+..+|.|
T Consensus 371 tvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvV-rsfsSGkREgGdFi~~~lSpkG 449 (508)
T KOG0275|consen 371 TVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVV-RSFSSGKREGGDFINAILSPKG 449 (508)
T ss_pred cEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEE-eeeccCCccCCceEEEEecCCC
Confidence 9999999999999888754 3467788777753 344444566788877764332 222 234566778888999
Q ss_pred CEEEEEECCCeEEEEEcCCCceeeeecCCCCCCCCceeEEEEcCCCC
Q 001462 279 KLLGCSFYRNSVGIWVADVSHVEPYGVGAPEPDQSICTEVKFNPPGS 325 (1074)
Q Consensus 279 klLAsgs~DGsV~IWDld~~~l~~~~~~~~~~~~~~ItsVaFSPDGs 325 (1074)
.++.|.+.|+.++.|.+..+.++... .-|...+..++.+|-.+
T Consensus 450 ewiYcigED~vlYCF~~~sG~LE~tl----~VhEkdvIGl~HHPHqN 492 (508)
T KOG0275|consen 450 EWIYCIGEDGVLYCFSVLSGKLERTL----PVHEKDVIGLTHHPHQN 492 (508)
T ss_pred cEEEEEccCcEEEEEEeecCceeeee----ecccccccccccCcccc
Confidence 99999999999999999888888766 35566777888888555
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.9e-23 Score=249.56 Aligned_cols=251 Identities=26% Similarity=0.492 Sum_probs=227.1
Q ss_pred cCceEEE-EecCCCCEEEEEEecCCCcEEEEEECCCeEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeE
Q 001462 4 RGYKLQE-FVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVI 82 (1074)
Q Consensus 4 tG~~v~~-L~gHs~~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~k~l~sl~~hs~~ItsLafSpdg~~LatGs~DG~I 82 (1074)
.++.+.. +.||.+.|.+++|.. +..+|++|+.|.++++||..++++...+.+|...|.++... +.++++|+.|.+|
T Consensus 237 ~~~~i~~~l~GH~g~V~~l~~~~-~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~--~~~~~sgs~D~tV 313 (537)
T KOG0274|consen 237 NGYLILTRLVGHFGGVWGLAFPS-GGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTID--PFLLVSGSRDNTV 313 (537)
T ss_pred cceEEEeeccCCCCCceeEEEec-CCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEcc--CceEeeccCCceE
Confidence 4566666 999999999999987 44899999999999999999999999999999999998875 4578888999999
Q ss_pred EEEEcCCCeeEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEEC
Q 001462 83 KLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGF 162 (1074)
Q Consensus 83 ~VWDl~tgk~i~tl~~h~~~VtsLafSPdg~~LaSgS~DGsI~IWDi~tg~~v~~l~~h~~~VtsLafSPdG~~LaSgs~ 162 (1074)
++|+++++..+..+.+|.+.|.++..+ +.++++|+.||.|.+||+.++++++.+.+|...|.++.+... .++++|+.
T Consensus 314 kVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~ 390 (537)
T KOG0274|consen 314 KVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSL 390 (537)
T ss_pred EEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeee
Confidence 999999999999999999999999998 889999999999999999999999999999999999988765 78999999
Q ss_pred CCeEEEEECCCC-ceEEEeeecCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCCcEEEeeCC-CCCCeEEEEEecCCCE
Q 001462 163 DNVVKVWDLTAG-KLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRP-EVTGVHAITFHPDGRT 240 (1074)
Q Consensus 163 DGsI~VWDl~tg-k~v~~~~~h~g~ItsLafSPdg~lLaTGS~DGtI~IWDl~tg~~i~t~~~-~~~~ItsIafSPDG~~ 240 (1074)
|+.|++||+.+. +++..+.+|.+-+..+.+ .+++|++++.|++|++||...++++..+.. +.+.|..+++. +...
T Consensus 391 D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~-~~~i 467 (537)
T KOG0274|consen 391 DTTIKVWDLRTKRKCIHTLQGHTSLVSSLLL--RDNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG-KEEI 467 (537)
T ss_pred ccceEeecCCchhhhhhhhcCCccccccccc--ccceeEeccccccEEEeecccCceeeeeccCCcccEEEeecC-cceE
Confidence 999999999999 999999999988866655 578999999999999999999999999988 67888888887 5566
Q ss_pred EEEEECCcEEEEEecCCeeeecc
Q 001462 241 LFSGFDDNLKVYSWEPVICHDSV 263 (1074)
Q Consensus 241 LasGsd~~I~Vwd~~s~~~~~~l 263 (1074)
|+++.++.+++||+.++.+...+
T Consensus 468 l~s~~~~~~~l~dl~~~~~~~~l 490 (537)
T KOG0274|consen 468 LCSSDDGSVKLWDLRSGTLIRTL 490 (537)
T ss_pred EEEecCCeeEEEecccCchhhhh
Confidence 77788899999999988776644
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1e-23 Score=237.86 Aligned_cols=286 Identities=18% Similarity=0.292 Sum_probs=221.4
Q ss_pred EEEEecCCCCEEEEEEecCCCcEEEEEECCCeEEEEECCCCc----eEEEe-eCCCCCeEEEEEcCCCCEEEEEEcCCeE
Q 001462 8 LQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPT----ALMSL-CGLSSPVDSVAFDSAEVLVLAGASTGVI 82 (1074)
Q Consensus 8 v~~L~gHs~~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~k----~l~sl-~~hs~~ItsLafSpdg~~LatGs~DG~I 82 (1074)
-..|.+|+..|.++++.|.| -.|++|+.|..|++||+.... ....+ ......|.++.|++.|..|++.+.....
T Consensus 160 Ei~l~hgtk~Vsal~~Dp~G-aR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqa 238 (641)
T KOG0772|consen 160 EIQLKHGTKIVSALAVDPSG-ARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQA 238 (641)
T ss_pred eEeccCCceEEEEeeecCCC-ceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcce
Confidence 34688999999999999999 679999999999999995432 22222 3445689999999999999998888999
Q ss_pred EEEEcCCCeeEE------------EEeCCCCCeEEEEEcCCCC-EEEEEECCCeEEEEECCCCe-EEEEEe-----CCCC
Q 001462 83 KLWDLEESKMVR------------TLTGHKSNCTAVEFHPFGE-FFASGCMDTNLKIWDIRKKG-CIHTYK-----GHTR 143 (1074)
Q Consensus 83 ~VWDl~tgk~i~------------tl~~h~~~VtsLafSPdg~-~LaSgS~DGsI~IWDi~tg~-~v~~l~-----~h~~ 143 (1074)
+|+|-...+.+. ..++|...++|.+|+|+.+ .|++++.||+++|||+...+ .++.++ +..-
T Consensus 239 kl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv 318 (641)
T KOG0772|consen 239 KLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRV 318 (641)
T ss_pred eEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCccc
Confidence 999965433332 2357888999999999764 78999999999999997654 233333 2334
Q ss_pred CeEEEEEcCCCCEEEEEECCCeEEEEECCCCce---EEEeeecCC--CeEEEEEcCCCcEEEEEeCCCeEEEEECCCCc-
Q 001462 144 GINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKL---LHDFKFHEG--HIRSIDFHPLEFLLATGSADRTVKFWDLETFE- 217 (1074)
Q Consensus 144 ~VtsLafSPdG~~LaSgs~DGsI~VWDl~tgk~---v~~~~~h~g--~ItsLafSPdg~lLaTGS~DGtI~IWDl~tg~- 217 (1074)
.++.++|++||++||+|+.||.|.+|+...... ...-++|.. .|+||.|+++|++|++-+.|+++++||++..+
T Consensus 319 ~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kk 398 (641)
T KOG0772|consen 319 PVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKK 398 (641)
T ss_pred CceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeecccccc
Confidence 689999999999999999999999999855422 233346766 89999999999999999999999999999754
Q ss_pred EEEeeCC--CCCCeEEEEEecCCCEEEEEE-------CCcEEEEEecCCeeeeccccC-CceeeEEEecCCCEEEEEECC
Q 001462 218 LIGSTRP--EVTGVHAITFHPDGRTLFSGF-------DDNLKVYSWEPVICHDSVDMG-WSTLGDLCINDGKLLGCSFYR 287 (1074)
Q Consensus 218 ~i~t~~~--~~~~ItsIafSPDG~~LasGs-------d~~I~Vwd~~s~~~~~~l~~~-~s~~~~l~spDGklLAsgs~D 287 (1074)
++....+ ...+-+.++|+|+.++|++|. .+.+.+||-.+...+..+... .++..++|.|.=+.|.+|+.|
T Consensus 399 pL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgd 478 (641)
T KOG0772|consen 399 PLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAGSGD 478 (641)
T ss_pred chhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeeecCC
Confidence 3433332 233458899999999999974 234788887776666555443 455667777777778888899
Q ss_pred CeEEEEE
Q 001462 288 NSVGIWV 294 (1074)
Q Consensus 288 GsV~IWD 294 (1074)
|.++||-
T Consensus 479 G~~~vyY 485 (641)
T KOG0772|consen 479 GTAHVYY 485 (641)
T ss_pred CceEEEE
Confidence 9999984
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.1e-23 Score=236.14 Aligned_cols=303 Identities=17% Similarity=0.296 Sum_probs=243.1
Q ss_pred EEEEecCCCCEEEEEEecCCCcEEEEEECCCeEEEEECCCCceEE----E-------------e-eCCCCCeEEEEEcCC
Q 001462 8 LQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALM----S-------------L-CGLSSPVDSVAFDSA 69 (1074)
Q Consensus 8 v~~L~gHs~~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~k~l~----s-------------l-~~hs~~ItsLafSpd 69 (1074)
+..+..|.-.|.|++++|++ .+.++++.+|+|.-|++.+++... . - ..|...+.+++.++|
T Consensus 135 ~~~~~~H~~s~~~vals~d~-~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~D 213 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDD-KRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSD 213 (479)
T ss_pred ceeeccccCcceEEEeeccc-cceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCC
Confidence 56678899999999999998 789999999999999987765331 1 0 267788999999999
Q ss_pred CCEEEEEEcCCeEEEEEcCCCeeEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeCCCCCeEEEE
Q 001462 70 EVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIR 149 (1074)
Q Consensus 70 g~~LatGs~DG~I~VWDl~tgk~i~tl~~h~~~VtsLafSPdg~~LaSgS~DGsI~IWDi~tg~~v~~l~~h~~~VtsLa 149 (1074)
|+||++|+.|..|.||+.++.+.++.+.+|.+.|.+++|-..-..+++++.|..|++|++.....+.++.+|++.|..|.
T Consensus 214 gkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~Id 293 (479)
T KOG0299|consen 214 GKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGID 293 (479)
T ss_pred CcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccceeeec
Confidence 99999999999999999999999999999999999999998888899999999999999999999999999999999999
Q ss_pred EcCCCCEEEEEECCCeEEEEECCCCceEEEeeecCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCCcEEEeeCCCCCCe
Q 001462 150 FTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGV 229 (1074)
Q Consensus 150 fSPdG~~LaSgs~DGsI~VWDl~tgk~v~~~~~h~g~ItsLafSPdg~lLaTGS~DGtI~IWDl~tg~~i~t~~~~~~~I 229 (1074)
...-++.+-+|+.|+++++|++. ......|.++.+.+-|++|-. ...+++|+.||.|.+|++.+.+++......++-+
T Consensus 294 aL~reR~vtVGgrDrT~rlwKi~-eesqlifrg~~~sidcv~~In-~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~ 371 (479)
T KOG0299|consen 294 ALSRERCVTVGGRDRTVRLWKIP-EESQLIFRGGEGSIDCVAFIN-DEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVI 371 (479)
T ss_pred hhcccceEEeccccceeEEEecc-ccceeeeeCCCCCeeeEEEec-ccceeeccCCceEEEeeecccCceeEeecccccc
Confidence 98888888888899999999993 444556778899999999975 5678899999999999999988887765443322
Q ss_pred EEEEEecCCCEEEEEECCcEEEEEecCCeeeeccccCCceeeEEEecCCCEEEEEECCCeEEEEEcCCCc--eeeeecCC
Q 001462 230 HAITFHPDGRTLFSGFDDNLKVYSWEPVICHDSVDMGWSTLGDLCINDGKLLGCSFYRNSVGIWVADVSH--VEPYGVGA 307 (1074)
Q Consensus 230 tsIafSPDG~~LasGsd~~I~Vwd~~s~~~~~~l~~~~s~~~~l~spDGklLAsgs~DGsV~IWDld~~~--l~~~~~~~ 307 (1074)
..+ +. +....-+...+..+...++|+|+++|.|++|.+..+. +.++.
T Consensus 372 ~~~--------------~~--------------~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~--- 420 (479)
T KOG0299|consen 372 PEL--------------DP--------------VNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLY--- 420 (479)
T ss_pred CCc--------------cc--------------cccccceeeeEecccCceEEecCCCCceEEEEecCCccccceee---
Confidence 111 00 0000123345556788899999999999999987663 22222
Q ss_pred CCCCCCceeEEEEcCCCCcceeEEEEEeccCcceEEeecC
Q 001462 308 PEPDQSICTEVKFNPPGSHSLEKVGIIGRSTSGFRSTSPD 347 (1074)
Q Consensus 308 ~~~~~~~ItsVaFSPDGs~~Lv~vlavG~stG~~r~ivpD 347 (1074)
.....+.|++++|+++|+.+++. +|...-.-||....
T Consensus 421 ~ls~~GfVNsl~f~~sgk~ivag---iGkEhRlGRW~~~k 457 (479)
T KOG0299|consen 421 SLSLVGFVNSLAFSNSGKRIVAG---IGKEHRLGRWWCLK 457 (479)
T ss_pred ecccccEEEEEEEccCCCEEEEe---cccccccceeeEee
Confidence 24568999999999999965554 33333333666554
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.1e-23 Score=221.77 Aligned_cols=278 Identities=19% Similarity=0.328 Sum_probs=226.1
Q ss_pred EEEEEEecCCCcEEEEEE-------CCCeEEEEECCCCceEEEee--CCCCCeEEEEEcCC-CCEEEEEEcCCeEEEEEc
Q 001462 18 VNCISIGKKACRFLITGG-------DDQKVNLWAIGKPTALMSLC--GLSSPVDSVAFDSA-EVLVLAGASTGVIKLWDL 87 (1074)
Q Consensus 18 Vt~IafSPdg~~lLaTGs-------~DGtV~IWDl~t~k~l~sl~--~hs~~ItsLafSpd-g~~LatGs~DG~I~VWDl 87 (1074)
=.++.|||--..+|+++. ..|.+.|.++..++-+.... .-...+..++|+++ .+.+++++.||.+++||+
T Consensus 11 GysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~ 90 (311)
T KOG0277|consen 11 GYSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDL 90 (311)
T ss_pred cceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEecc
Confidence 367899997656666553 36889999986555555443 34678999999985 468888999999999996
Q ss_pred CC-CeeEEEEeCCCCCeEEEEEcCC-CCEEEEEECCCeEEEEECCCCeEEEEEeCCCCCeEEEEEcC-CCCEEEEEECCC
Q 001462 88 EE-SKMVRTLTGHKSNCTAVEFHPF-GEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTP-DGRWVVSGGFDN 164 (1074)
Q Consensus 88 ~t-gk~i~tl~~h~~~VtsLafSPd-g~~LaSgS~DGsI~IWDi~tg~~v~~l~~h~~~VtsLafSP-dG~~LaSgs~DG 164 (1074)
.. ..++..++.|..+|.++.|++- +..+++++.||+|++|+...++.+.++.+|...|+..+|+| .+++|++++.||
T Consensus 91 ~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~ 170 (311)
T KOG0277|consen 91 TMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDG 170 (311)
T ss_pred CCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCc
Confidence 43 4578889999999999999984 55788889999999999999999999999999999999999 678999999999
Q ss_pred eEEEEECCCCceEEEeeecCCCeEEEEEcC-CCcEEEEEeCCCeEEEEECCCC-cEEEeeCCCCCCeEEEEEecCCC-EE
Q 001462 165 VVKVWDLTAGKLLHDFKFHEGHIRSIDFHP-LEFLLATGSADRTVKFWDLETF-ELIGSTRPEVTGVHAITFHPDGR-TL 241 (1074)
Q Consensus 165 sI~VWDl~tgk~v~~~~~h~g~ItsLafSP-dg~lLaTGS~DGtI~IWDl~tg-~~i~t~~~~~~~ItsIafSPDG~-~L 241 (1074)
.+++||++.......+..|...|.++.|+. +..+|++|+.|+.|++||+++. .++..+.+|.-.|+.+.|+|... .|
T Consensus 171 ~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lL 250 (311)
T KOG0277|consen 171 TLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLL 250 (311)
T ss_pred eEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHh
Confidence 999999987655555899999999999998 5689999999999999999975 46778889999999999999754 44
Q ss_pred EEE-ECCcEEEEEecC-CeeeeccccCCceeeEEEe--cCCCEEEEEECCCeEEEEEc
Q 001462 242 FSG-FDDNLKVYSWEP-VICHDSVDMGWSTLGDLCI--NDGKLLGCSFYRNSVGIWVA 295 (1074)
Q Consensus 242 asG-sd~~I~Vwd~~s-~~~~~~l~~~~s~~~~l~s--pDGklLAsgs~DGsV~IWDl 295 (1074)
+++ .|-+++||+... ..+...++.+......+-+ .++.++|..++|+.+.||+-
T Consensus 251 aSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 251 ASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred hhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence 554 566799999884 3445555555544444333 37889999999999999973
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.9e-23 Score=242.90 Aligned_cols=250 Identities=21% Similarity=0.390 Sum_probs=222.2
Q ss_pred cCceEEEEecCCCCEEEEEEecCCCcEEEEEECCCeEEEEECCCCceEEEeeC-CCCCeEEEEEcCCCCEEEEEEcCCeE
Q 001462 4 RGYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCG-LSSPVDSVAFDSAEVLVLAGASTGVI 82 (1074)
Q Consensus 4 tG~~v~~L~gHs~~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~k~l~sl~~-hs~~ItsLafSpdg~~LatGs~DG~I 82 (1074)
+|.....+..+.+.|+++.|+++| .+|++|..+|.|.|||....+.+..+.+ |...|.+++|. +..+.+|+.+|.|
T Consensus 206 s~~v~~l~~~~~~~vtSv~ws~~G-~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I 282 (484)
T KOG0305|consen 206 SGSVTELCSFGEELVTSVKWSPDG-SHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKI 282 (484)
T ss_pred CCceEEeEecCCCceEEEEECCCC-CEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc--CceEEEecCCCcE
Confidence 344444445558999999999999 8999999999999999999999999988 99999999998 7789999999999
Q ss_pred EEEEcCCCeeEEE-EeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeCCCCCeEEEEEcC-CCCEEEEE
Q 001462 83 KLWDLEESKMVRT-LTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTP-DGRWVVSG 160 (1074)
Q Consensus 83 ~VWDl~tgk~i~t-l~~h~~~VtsLafSPdg~~LaSgS~DGsI~IWDi~tg~~v~~l~~h~~~VtsLafSP-dG~~LaSg 160 (1074)
..+|++..+.... +.+|...|+.+.|++|+.+||+|+.|+.+.|||.........+..|...|..++|+| ...+||+|
T Consensus 283 ~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsG 362 (484)
T KOG0305|consen 283 LNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATG 362 (484)
T ss_pred EEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEc
Confidence 9999987765444 888999999999999999999999999999999988888899999999999999999 55678886
Q ss_pred E--CCCeEEEEECCCCceEEEeeecCCCeEEEEEcCCCcEEEEEe--CCCeEEEEECCCCcEEEeeCCCCCCeEEEEEec
Q 001462 161 G--FDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGS--ADRTVKFWDLETFELIGSTRPEVTGVHAITFHP 236 (1074)
Q Consensus 161 s--~DGsI~VWDl~tgk~v~~~~~h~g~ItsLafSPdg~lLaTGS--~DGtI~IWDl~tg~~i~t~~~~~~~ItsIafSP 236 (1074)
+ .|+.|++||..+|..+..+.. .+.|..|.|++..+.|+++. .++.|.||+..+.+.+..+.+|...|..++++|
T Consensus 363 GGs~D~~i~fwn~~~g~~i~~vdt-gsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SP 441 (484)
T KOG0305|consen 363 GGSADRCIKFWNTNTGARIDSVDT-GSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSP 441 (484)
T ss_pred CCCcccEEEEEEcCCCcEeccccc-CCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECC
Confidence 5 589999999999999988874 66799999999987776654 467899999999999999999999999999999
Q ss_pred CCCEEEEE-ECCcEEEEEecCC
Q 001462 237 DGRTLFSG-FDDNLKVYSWEPV 257 (1074)
Q Consensus 237 DG~~LasG-sd~~I~Vwd~~s~ 257 (1074)
||..+++| .|+++++|++-..
T Consensus 442 dg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 442 DGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred CCCEEEEecccCcEEeccccCC
Confidence 99999986 6888999997653
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.8e-22 Score=240.52 Aligned_cols=225 Identities=16% Similarity=0.307 Sum_probs=183.7
Q ss_pred EECCCeEEEEECCCCceEEEeeCCCCCeEEEEEcCC-CCEEEEEEcCCeEEEEEcCCCe--------eEEEEeCCCCCeE
Q 001462 34 GGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSA-EVLVLAGASTGVIKLWDLEESK--------MVRTLTGHKSNCT 104 (1074)
Q Consensus 34 Gs~DGtV~IWDl~t~k~l~sl~~hs~~ItsLafSpd-g~~LatGs~DG~I~VWDl~tgk--------~i~tl~~h~~~Vt 104 (1074)
|+.+|.|++|+......+..+.+|...|.+++|+|+ +.+|++|+.||.|+|||+.++. .+..+.+|...|.
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~ 129 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS 129 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE
Confidence 566889999999887788889999999999999996 7899999999999999997542 3456788999999
Q ss_pred EEEEcCCCCE-EEEEECCCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeeec
Q 001462 105 AVEFHPFGEF-FASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFH 183 (1074)
Q Consensus 105 sLafSPdg~~-LaSgS~DGsI~IWDi~tg~~v~~l~~h~~~VtsLafSPdG~~LaSgs~DGsI~VWDl~tgk~v~~~~~h 183 (1074)
+++|+|++.. |++++.||.|+|||++++..+..+. +...|.+++|+++|.+|++++.|+.|++||+++++.+..+.+|
T Consensus 130 sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH 208 (568)
T PTZ00420 130 IIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIH 208 (568)
T ss_pred EEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecc
Confidence 9999999876 4688999999999999998877776 5678999999999999999999999999999999999999999
Q ss_pred CCCeEE-----EEEcCCCcEEEEEeCCC----eEEEEECCC-CcEEEeeCC--CCCCeEEEEEecCCCEEEEE-ECCcEE
Q 001462 184 EGHIRS-----IDFHPLEFLLATGSADR----TVKFWDLET-FELIGSTRP--EVTGVHAITFHPDGRTLFSG-FDDNLK 250 (1074)
Q Consensus 184 ~g~Its-----LafSPdg~lLaTGS~DG----tI~IWDl~t-g~~i~t~~~--~~~~ItsIafSPDG~~LasG-sd~~I~ 250 (1074)
.+.+.+ ..|++++.+|++++.|+ .|+|||++. .+++..+.. ..+.+......++|.++++| .|+.|+
T Consensus 209 ~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr 288 (568)
T PTZ00420 209 DGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCR 288 (568)
T ss_pred cCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEE
Confidence 876543 23568888999888764 799999995 455544432 22333333344568888887 577799
Q ss_pred EEEecCCee
Q 001462 251 VYSWEPVIC 259 (1074)
Q Consensus 251 Vwd~~s~~~ 259 (1074)
+|++.....
T Consensus 289 ~~e~~~~~~ 297 (568)
T PTZ00420 289 YYQHSLGSI 297 (568)
T ss_pred EEEccCCcE
Confidence 999976543
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.2e-24 Score=223.63 Aligned_cols=240 Identities=25% Similarity=0.422 Sum_probs=209.6
Q ss_pred CCCCEEEEEEecCCCcEEEEEECCCeEEEEECCC-CceEEEeeCCCCCeEEEEEcC-CCCEEEEEEcCCeEEEEEcCCCe
Q 001462 14 HSANVNCISIGKKACRFLITGGDDQKVNLWAIGK-PTALMSLCGLSSPVDSVAFDS-AEVLVLAGASTGVIKLWDLEESK 91 (1074)
Q Consensus 14 Hs~~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t-~k~l~sl~~hs~~ItsLafSp-dg~~LatGs~DG~I~VWDl~tgk 91 (1074)
-.+.+..++|++.....+++++.||.++|||+.. ..++..++.|...|.++.|++ ++..+++++-||+|++|+..-+.
T Consensus 59 ~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~ 138 (311)
T KOG0277|consen 59 TEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPN 138 (311)
T ss_pred cccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCc
Confidence 3578999999999989999999999999999743 457888899999999999998 56678888999999999999999
Q ss_pred eEEEEeCCCCCeEEEEEcC-CCCEEEEEECCCeEEEEECCCCeEEEEEeCCCCCeEEEEEcC-CCCEEEEEECCCeEEEE
Q 001462 92 MVRTLTGHKSNCTAVEFHP-FGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTP-DGRWVVSGGFDNVVKVW 169 (1074)
Q Consensus 92 ~i~tl~~h~~~VtsLafSP-dg~~LaSgS~DGsI~IWDi~tg~~v~~l~~h~~~VtsLafSP-dG~~LaSgs~DGsI~VW 169 (1074)
.+.++.+|...|+...|+| ..+.|++++.||++++||++.......+..|...+.|+.|+. +.+.|++|+.|+.|++|
T Consensus 139 Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~w 218 (311)
T KOG0277|consen 139 SVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGW 218 (311)
T ss_pred ceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEE
Confidence 9999999999999999999 567999999999999999987665566888999999999998 56688999999999999
Q ss_pred ECCCC-ceEEEeeecCCCeEEEEEcCC-CcEEEEEeCCCeEEEEECCCCc-EEEeeCCCCCCeEEEEEecC-CCEEEE-E
Q 001462 170 DLTAG-KLLHDFKFHEGHIRSIDFHPL-EFLLATGSADRTVKFWDLETFE-LIGSTRPEVTGVHAITFHPD-GRTLFS-G 244 (1074)
Q Consensus 170 Dl~tg-k~v~~~~~h~g~ItsLafSPd-g~lLaTGS~DGtI~IWDl~tg~-~i~t~~~~~~~ItsIafSPD-G~~Las-G 244 (1074)
|++.- .++.++.+|.-.|..+.|+|. ..+|++++.|-+++|||..... .+.+...|..-+..+.|++- +.+++. |
T Consensus 219 Dir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~g 298 (311)
T KOG0277|consen 219 DIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTG 298 (311)
T ss_pred ehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecc
Confidence 99875 467888999999999999996 5789999999999999998544 45566677778899999874 556665 7
Q ss_pred ECCcEEEEE
Q 001462 245 FDDNLKVYS 253 (1074)
Q Consensus 245 sd~~I~Vwd 253 (1074)
.|+.++||+
T Consensus 299 WDe~l~Vw~ 307 (311)
T KOG0277|consen 299 WDELLYVWN 307 (311)
T ss_pred cccceeeec
Confidence 899999986
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.9e-22 Score=213.64 Aligned_cols=288 Identities=17% Similarity=0.265 Sum_probs=236.0
Q ss_pred ceEEEEecCCCCEEEEEEecCCCcEEEEEECCCeEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEEEEc--CCeEE
Q 001462 6 YKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGAS--TGVIK 83 (1074)
Q Consensus 6 ~~v~~L~gHs~~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~k~l~sl~~hs~~ItsLafSpdg~~LatGs~--DG~I~ 83 (1074)
+..+.|..-.+.|++|.|+++| .+|++++.|..++|||..+++....+..+...+..++|......++.++. |.+|+
T Consensus 5 ~~ak~f~~~~~~i~sl~fs~~G-~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIr 83 (311)
T KOG1446|consen 5 RPAKVFRETNGKINSLDFSDDG-LLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIR 83 (311)
T ss_pred ccccccccCCCceeEEEecCCC-CEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceE
Confidence 3445566667899999999999 78888999999999999999999999999999999999887777777776 78999
Q ss_pred EEEcCCCeeEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECC
Q 001462 84 LWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFD 163 (1074)
Q Consensus 84 VWDl~tgk~i~tl~~h~~~VtsLafSPdg~~LaSgS~DGsI~IWDi~tg~~v~~l~~h~~~VtsLafSPdG~~LaSgs~D 163 (1074)
..++.+.+.++.+.+|...|..++.+|-++.|++++.|++|++||++..++...+..... ..++|.|.|-++|++...
T Consensus 84 yLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~--pi~AfDp~GLifA~~~~~ 161 (311)
T KOG1446|consen 84 YLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGR--PIAAFDPEGLIFALANGS 161 (311)
T ss_pred EEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCC--cceeECCCCcEEEEecCC
Confidence 999999999999999999999999999999999999999999999998888777764433 457999999999999888
Q ss_pred CeEEEEECCCC--ceEEEeee---cCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCCcEEEeeCCCCCC---eEEEEEe
Q 001462 164 NVVKVWDLTAG--KLLHDFKF---HEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTG---VHAITFH 235 (1074)
Q Consensus 164 GsI~VWDl~tg--k~v~~~~~---h~g~ItsLafSPdg~lLaTGS~DGtI~IWDl~tg~~i~t~~~~~~~---ItsIafS 235 (1074)
..|++||++.. .+...+.. .......|.|+|||++|+.+...+.+++.|.-+|..+..+..+... -.+.+|.
T Consensus 162 ~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ft 241 (311)
T KOG1446|consen 162 ELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFT 241 (311)
T ss_pred CeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEEC
Confidence 89999999874 23444432 3566899999999999999999999999999999988887765443 2578899
Q ss_pred cCCCEEEEEEC-CcEEEEEecCCeeeeccccC--CceeeEEEecCCCEEEEEECCCeEEEEEcCCC
Q 001462 236 PDGRTLFSGFD-DNLKVYSWEPVICHDSVDMG--WSTLGDLCINDGKLLGCSFYRNSVGIWVADVS 298 (1074)
Q Consensus 236 PDG~~LasGsd-~~I~Vwd~~s~~~~~~l~~~--~s~~~~l~spDGklLAsgs~DGsV~IWDld~~ 298 (1074)
|||+++++|++ +.|.+|+++++......... ......-+.| ++....+.+..+.+|-.+..
T Consensus 242 Pds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP--~~~mf~sa~s~l~fw~p~~~ 305 (311)
T KOG1446|consen 242 PDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNP--RYAMFVSASSNLVFWLPDED 305 (311)
T ss_pred CCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCC--ceeeeeecCceEEEEecccc
Confidence 99999999865 77999999988877666542 2222333334 33444445778999965433
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.1e-22 Score=215.86 Aligned_cols=271 Identities=15% Similarity=0.297 Sum_probs=222.9
Q ss_pred eEEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeeEEEEeCCCCCeEEEEEcCCCCEEEEEEC--CCeEEEE
Q 001462 50 ALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCM--DTNLKIW 127 (1074)
Q Consensus 50 ~l~sl~~hs~~ItsLafSpdg~~LatGs~DG~I~VWDl~tgk~i~tl~~h~~~VtsLafSPdg~~LaSgS~--DGsI~IW 127 (1074)
..+.+......|.++.|+.+|.+|++++.|..|+|||..+++.++++..+...|..++|......++.++. |..|+..
T Consensus 6 ~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryL 85 (311)
T KOG1446|consen 6 PAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYL 85 (311)
T ss_pred cccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEE
Confidence 34455556788999999999999999999999999999999999999999899999999887777777766 8899999
Q ss_pred ECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeeecCCCeEEEEEcCCCcEEEEEeCCCe
Q 001462 128 DIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRT 207 (1074)
Q Consensus 128 Di~tg~~v~~l~~h~~~VtsLafSPdG~~LaSgs~DGsI~VWDl~tgk~v~~~~~h~g~ItsLafSPdg~lLaTGS~DGt 207 (1074)
++.+.+.++.+.+|...|..|+.+|-+..+++++.|++|++||++..++...+.... -..++|.|.|-++|++...+.
T Consensus 86 sl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~--~pi~AfDp~GLifA~~~~~~~ 163 (311)
T KOG1446|consen 86 SLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSG--RPIAAFDPEGLIFALANGSEL 163 (311)
T ss_pred EeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCC--CcceeECCCCcEEEEecCCCe
Confidence 999999999999999999999999999999999999999999999888777665333 345789999999999998889
Q ss_pred EEEEECCCCc--EEEeeC---CCCCCeEEEEEecCCCEEEEEECCc-EEEEEecCCeeeeccccC----CceeeEEEecC
Q 001462 208 VKFWDLETFE--LIGSTR---PEVTGVHAITFHPDGRTLFSGFDDN-LKVYSWEPVICHDSVDMG----WSTLGDLCIND 277 (1074)
Q Consensus 208 I~IWDl~tg~--~i~t~~---~~~~~ItsIafSPDG~~LasGsd~~-I~Vwd~~s~~~~~~l~~~----~s~~~~l~spD 277 (1074)
|++||++... +...+. ......+.+.|+|||++|+.+.+++ +++.|.-.+.....+... .......+.||
T Consensus 164 IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPd 243 (311)
T KOG1446|consen 164 IKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPD 243 (311)
T ss_pred EEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCC
Confidence 9999999642 223332 3356689999999999999876554 777776666655444322 23356777799
Q ss_pred CCEEEEEECCCeEEEEEcCCCceeeeecCCCCCCCCceeEEEEcCCCC
Q 001462 278 GKLLGCSFYRNSVGIWVADVSHVEPYGVGAPEPDQSICTEVKFNPPGS 325 (1074)
Q Consensus 278 GklLAsgs~DGsV~IWDld~~~l~~~~~~~~~~~~~~ItsVaFSPDGs 325 (1074)
++++++|+.||+|++|+++.++...... .++.+.+.++.|+|--.
T Consensus 244 s~Fvl~gs~dg~i~vw~~~tg~~v~~~~---~~~~~~~~~~~fnP~~~ 288 (311)
T KOG1446|consen 244 SKFVLSGSDDGTIHVWNLETGKKVAVLR---GPNGGPVSCVRFNPRYA 288 (311)
T ss_pred CcEEEEecCCCcEEEEEcCCCcEeeEec---CCCCCCccccccCCcee
Confidence 9999999999999999998776655442 23688999999999544
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.7e-24 Score=237.05 Aligned_cols=280 Identities=25% Similarity=0.380 Sum_probs=244.5
Q ss_pred EEEecCCCCEEEEEEecCCCcEEEEEECCCeEEEEECCCCc--eEEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEE
Q 001462 9 QEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPT--ALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWD 86 (1074)
Q Consensus 9 ~~L~gHs~~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~k--~l~sl~~hs~~ItsLafSpdg~~LatGs~DG~I~VWD 86 (1074)
..+..|.+.|+.+.|-++. ..|++|+.|..|++|+....+ .+.++.+..++|+.+.|.++++++++++.|+.+++|+
T Consensus 169 ~~ld~h~gev~~v~~l~~s-dtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wn 247 (459)
T KOG0288|consen 169 FVLDAHEGEVHDVEFLRNS-DTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWN 247 (459)
T ss_pred hhhhccccccceeEEccCc-chhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeee
Confidence 3567899999999999986 579999999999999986555 6677888889999999999999999999999999999
Q ss_pred cCCCeeEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeE
Q 001462 87 LEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVV 166 (1074)
Q Consensus 87 l~tgk~i~tl~~h~~~VtsLafSPdg~~LaSgS~DGsI~IWDi~tg~~v~~l~~h~~~VtsLafSPdG~~LaSgs~DGsI 166 (1074)
+...+...++.+|.+.|+++.|......+++|+.|.+|++||+....|...+. ....+..|+.+ +..+++|..|+.|
T Consensus 248 vd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l-~~S~cnDI~~~--~~~~~SgH~Dkkv 324 (459)
T KOG0288|consen 248 VDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVL-PGSQCNDIVCS--ISDVISGHFDKKV 324 (459)
T ss_pred ccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheecccc-ccccccceEec--ceeeeecccccce
Confidence 99999999999999999999999877779999999999999999988877765 34556677765 4568899999999
Q ss_pred EEEECCCCceEEEeeecCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCCcEEEeeCCCC----CCeEEEEEecCCCEEE
Q 001462 167 KVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEV----TGVHAITFHPDGRTLF 242 (1074)
Q Consensus 167 ~VWDl~tgk~v~~~~~h~g~ItsLafSPdg~lLaTGS~DGtI~IWDl~tg~~i~t~~~~~----~~ItsIafSPDG~~La 242 (1074)
++||.++..+......+. .|+++..+++|..|.+++.|.++.++|+++.+....+.... ...+.+.|||++.|++
T Consensus 325 RfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~Yva 403 (459)
T KOG0288|consen 325 RFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVA 403 (459)
T ss_pred EEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceee
Confidence 999999999999988654 89999999999999999999999999999998887765432 3478899999999999
Q ss_pred EE-ECCcEEEEEecCCeeeeccccCC---ceeeEEEecCCCEEEEEECCCeEEEE
Q 001462 243 SG-FDDNLKVYSWEPVICHDSVDMGW---STLGDLCINDGKLLGCSFYRNSVGIW 293 (1074)
Q Consensus 243 sG-sd~~I~Vwd~~s~~~~~~l~~~~---s~~~~l~spDGklLAsgs~DGsV~IW 293 (1074)
+| .++.++||+..++++...+.... .+..+.|.+-|.+|++++.++.+.+|
T Consensus 404 AGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 404 AGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLW 458 (459)
T ss_pred eccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEec
Confidence 97 57779999999999877765443 35667777999999999999999999
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.6e-23 Score=222.12 Aligned_cols=288 Identities=16% Similarity=0.308 Sum_probs=235.9
Q ss_pred ceEEEEecCCCCEEEEEEecCCCcEEEEEECCCeEEEEECCC------------------CceEEEeeCCCCCeEEEEEc
Q 001462 6 YKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGK------------------PTALMSLCGLSSPVDSVAFD 67 (1074)
Q Consensus 6 ~~v~~L~gHs~~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t------------------~k~l~sl~~hs~~ItsLafS 67 (1074)
+.-..+..|.+++.+-+|++|| .++++|+.|..|+|+|++. .-.+.++..|..+|.++.|+
T Consensus 103 yEt~ylt~HK~~cR~aafs~DG-~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FH 181 (430)
T KOG0640|consen 103 YETKYLTSHKSPCRAAAFSPDG-SLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFH 181 (430)
T ss_pred cceEEEeecccceeeeeeCCCC-cEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeec
Confidence 3455678899999999999999 8999999999999999851 12356788999999999999
Q ss_pred CCCCEEEEEEcCCeEEEEEcCCCee---EEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEE---eCC
Q 001462 68 SAEVLVLAGASTGVIKLWDLEESKM---VRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTY---KGH 141 (1074)
Q Consensus 68 pdg~~LatGs~DG~I~VWDl~tgk~---i~tl~~h~~~VtsLafSPdg~~LaSgS~DGsI~IWDi~tg~~v~~l---~~h 141 (1074)
|....|++|+.|++|++||+..... .+.+ ....+|.++.|+|.|.+|++|..-..+++||+.+.++...- ..|
T Consensus 182 Pre~ILiS~srD~tvKlFDfsK~saKrA~K~~-qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qh 260 (430)
T KOG0640|consen 182 PRETILISGSRDNTVKLFDFSKTSAKRAFKVF-QDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQH 260 (430)
T ss_pred chhheEEeccCCCeEEEEecccHHHHHHHHHh-hccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCccccc
Confidence 9999999999999999999975432 2223 35678999999999999999999999999999998876543 358
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEee-ecC-CCeEEEEEcCCCcEEEEEeCCCeEEEEECCCCcEE
Q 001462 142 TRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFK-FHE-GHIRSIDFHPLEFLLATGSADRTVKFWDLETFELI 219 (1074)
Q Consensus 142 ~~~VtsLafSPdG~~LaSgs~DGsI~VWDl~tgk~v~~~~-~h~-g~ItsLafSPdg~lLaTGS~DGtI~IWDl~tg~~i 219 (1074)
.+.|+++.+++.|++.++|+.||.|++||--+++++..+. .|. ..|.+..|..+|+++++.+.|..+++|.+.++.++
T Consensus 261 t~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l 340 (430)
T KOG0640|consen 261 TGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRML 340 (430)
T ss_pred ccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceE
Confidence 8899999999999999999999999999999999988875 455 45889999999999999999999999999999999
Q ss_pred EeeCCCCC-----CeEEEEEecCCCEEEEEEC--CcEEEEEecCCeeeecccc--CCceeeEEEecCCCEEEEEECCCeE
Q 001462 220 GSTRPEVT-----GVHAITFHPDGRTLFSGFD--DNLKVYSWEPVICHDSVDM--GWSTLGDLCINDGKLLGCSFYRNSV 290 (1074)
Q Consensus 220 ~t~~~~~~-----~ItsIafSPDG~~LasGsd--~~I~Vwd~~s~~~~~~l~~--~~s~~~~l~spDGklLAsgs~DGsV 290 (1074)
..+.+... --+...|.....|++.-.+ +.+.-||-++..-...... ...+.+..-+|.+..|.+++.|-.+
T Consensus 341 ~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~ra 420 (430)
T KOG0640|consen 341 KEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRA 420 (430)
T ss_pred EEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeeccccee
Confidence 88765421 1345668888888887543 4467777766554444433 3344555666889999999999999
Q ss_pred EEEEc
Q 001462 291 GIWVA 295 (1074)
Q Consensus 291 ~IWDl 295 (1074)
++|.-
T Consensus 421 RFWyr 425 (430)
T KOG0640|consen 421 RFWYR 425 (430)
T ss_pred eeeee
Confidence 99953
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.91 E-value=9.5e-23 Score=215.45 Aligned_cols=267 Identities=19% Similarity=0.378 Sum_probs=230.5
Q ss_pred EEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeeEEE--EeCCCCCeEEEEEcCC-CCEEEEEECCCeEEEEE
Q 001462 52 MSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRT--LTGHKSNCTAVEFHPF-GEFFASGCMDTNLKIWD 128 (1074)
Q Consensus 52 ~sl~~hs~~ItsLafSpdg~~LatGs~DG~I~VWDl~tgk~i~t--l~~h~~~VtsLafSPd-g~~LaSgS~DGsI~IWD 128 (1074)
..+.+|...+.+++|+.+|..|++|+.|+++.+|+++..+.... ..+|.+.|-.++|+|. ...|++++.|..|++||
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence 34567889999999999999999999999999999987755443 4578889999999884 56899999999999999
Q ss_pred CCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeeecCCCeEEEEEcCCCcEEEEEeCCCeE
Q 001462 129 IRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTV 208 (1074)
Q Consensus 129 i~tg~~v~~l~~h~~~VtsLafSPdG~~LaSgs~DGsI~VWDl~tgk~v~~~~~h~g~ItsLafSPdg~lLaTGS~DGtI 208 (1074)
++.++++..+....+.+ -+.|+|+|.++++++.|..|.+.|.++.+.....+ ....+.-++|+.++.+++.....|+|
T Consensus 94 ~r~~k~~~~i~~~~eni-~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~-~~~e~ne~~w~~~nd~Fflt~GlG~v 171 (313)
T KOG1407|consen 94 IRSGKCTARIETKGENI-NITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQ-FKFEVNEISWNNSNDLFFLTNGLGCV 171 (313)
T ss_pred eccCcEEEEeeccCcce-EEEEcCCCCEEEEecCcccEEEEEecccceeehhc-ccceeeeeeecCCCCEEEEecCCceE
Confidence 99999999987655544 67999999999999999999999999988877766 34567888999888888777778999
Q ss_pred EEEECCCCcEEEeeCCCCCCeEEEEEecCCCEEEEEEC-CcEEEEEecCCeeeecc-ccCCceeeEEEecCCCEEEEEEC
Q 001462 209 KFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGFD-DNLKVYSWEPVICHDSV-DMGWSTLGDLCINDGKLLGCSFY 286 (1074)
Q Consensus 209 ~IWDl~tg~~i~t~~~~~~~ItsIafSPDG~~LasGsd-~~I~Vwd~~s~~~~~~l-~~~~s~~~~l~spDGklLAsgs~ 286 (1074)
.|......+++..+..|.....||.|+|+|+|+++|+. -.+.+||++...|...+ .+.|.+....|++||++||+|+.
T Consensus 172 ~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSE 251 (313)
T KOG1407|consen 172 EILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASE 251 (313)
T ss_pred EEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCc
Confidence 99999999999999999999999999999999999864 45899999988887765 56788889999999999999999
Q ss_pred CCeEEEEEcCCCceeeeecCCCCCCCCceeEEEEcCCCC
Q 001462 287 RNSVGIWVADVSHVEPYGVGAPEPDQSICTEVKFNPPGS 325 (1074)
Q Consensus 287 DGsV~IWDld~~~l~~~~~~~~~~~~~~ItsVaFSPDGs 325 (1074)
|..|-|=++.++...+- .++.++...|+|+|.-.
T Consensus 252 Dh~IDIA~vetGd~~~e-----I~~~~~t~tVAWHPk~~ 285 (313)
T KOG1407|consen 252 DHFIDIAEVETGDRVWE-----IPCEGPTFTVAWHPKRP 285 (313)
T ss_pred cceEEeEecccCCeEEE-----eeccCCceeEEecCCCc
Confidence 99999998887765544 36678899999999544
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.1e-22 Score=229.57 Aligned_cols=272 Identities=19% Similarity=0.262 Sum_probs=224.0
Q ss_pred CCCCeEEEEEcCCCC-EEEEEEcCCeEEEEEcCCCeeEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEE
Q 001462 57 LSSPVDSVAFDSAEV-LVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCI 135 (1074)
Q Consensus 57 hs~~ItsLafSpdg~-~LatGs~DG~I~VWDl~tgk~i~tl~~h~~~VtsLafSPdg~~LaSgS~DGsI~IWDi~tg~~v 135 (1074)
....|.+++|+|... .+++.+ .-.+.||+..+....+.+......+++++|-.||+.|++|+..|.|++||+.+...+
T Consensus 25 e~~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iL 103 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVIL 103 (487)
T ss_pred ccCcceeEecCCCCCCceEEec-ccEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHH
Confidence 456899999999554 344444 356999999888877878778899999999999999999999999999998777778
Q ss_pred EEEeCCCCCeEEEEEcCCC-CEEEEEECCCeEEEEECCCCceEEEeeecCCCeEEEEEcCC-CcEEEEEeCCCeEEEEEC
Q 001462 136 HTYKGHTRGINTIRFTPDG-RWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPL-EFLLATGSADRTVKFWDL 213 (1074)
Q Consensus 136 ~~l~~h~~~VtsLafSPdG-~~LaSgs~DGsI~VWDl~tgk~v~~~~~h~g~ItsLafSPd-g~lLaTGS~DGtI~IWDl 213 (1074)
..+.+|..++..+.|+|++ ..|++|+.|+.+++||+.+...+..+.+|...|.|.+|+|. +.++++|+.||+|++||+
T Consensus 104 R~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~Dt 183 (487)
T KOG0310|consen 104 RQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDT 183 (487)
T ss_pred HHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEe
Confidence 8889999999999999955 56788888999999999999887789999999999999995 568999999999999999
Q ss_pred CCCcEEEeeCCCCCCeEEEEEecCCCEEEEEECCcEEEEEecCC-eeeeccc-cCCceeeEEEecCCCEEEEEECCCeEE
Q 001462 214 ETFELIGSTRPEVTGVHAITFHPDGRTLFSGFDDNLKVYSWEPV-ICHDSVD-MGWSTLGDLCINDGKLLGCSFYRNSVG 291 (1074)
Q Consensus 214 ~tg~~i~t~~~~~~~ItsIafSPDG~~LasGsd~~I~Vwd~~s~-~~~~~l~-~~~s~~~~l~spDGklLAsgs~DGsV~ 291 (1074)
+..........|..+|..+.|-|.|..+++++.+.++|||+-.+ +...... +...+.+..+..++..|++|+-|+.|+
T Consensus 184 R~~~~~v~elnhg~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VK 263 (487)
T KOG0310|consen 184 RSLTSRVVELNHGCPVESVLALPSGSLIASAGGNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVK 263 (487)
T ss_pred ccCCceeEEecCCCceeeEEEcCCCCEEEEcCCCeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceE
Confidence 98744444446788999999999999999999999999999854 3333333 344455555567899999999999999
Q ss_pred EEEcCCCceeeeecCCCCCCCCceeEEEEcCCCCcceeEEEEEeccCc
Q 001462 292 IWVADVSHVEPYGVGAPEPDQSICTEVKFNPPGSHSLEKVGIIGRSTS 339 (1074)
Q Consensus 292 IWDld~~~l~~~~~~~~~~~~~~ItsVaFSPDGs~~Lv~vlavG~stG 339 (1074)
+||...-++..- -.-.++|.+++.+||+. ...+|..+|
T Consensus 264 Vfd~t~~Kvv~s-----~~~~~pvLsiavs~dd~-----t~viGmsnG 301 (487)
T KOG0310|consen 264 VFDTTNYKVVHS-----WKYPGPVLSIAVSPDDQ-----TVVIGMSNG 301 (487)
T ss_pred EEEccceEEEEe-----eecccceeeEEecCCCc-----eEEEecccc
Confidence 999643332221 23468899999999888 788888888
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.2e-23 Score=232.76 Aligned_cols=281 Identities=23% Similarity=0.369 Sum_probs=237.7
Q ss_pred EecCCCCEEEEEEecCCCcEEEEEECCCeEEEEECCCC---ceEEEeeC--CCCCeEEEEEcCCCCEEEEEEcCCeEEEE
Q 001462 11 FVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKP---TALMSLCG--LSSPVDSVAFDSAEVLVLAGASTGVIKLW 85 (1074)
Q Consensus 11 L~gHs~~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~---k~l~sl~~--hs~~ItsLafSpdg~~LatGs~DG~I~VW 85 (1074)
...|..-|.++.++... +.+++|+. |.|+|||+... ..+..+.. ....|..+.+.|||+.|++|+.-.++.||
T Consensus 415 tL~HGEvVcAvtIS~~t-rhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiW 492 (705)
T KOG0639|consen 415 TLAHGEVVCAVTISNPT-RHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIW 492 (705)
T ss_pred hhccCcEEEEEEecCCc-ceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeee
Confidence 34788888889999887 78899886 78999999543 23333432 35679999999999999999999999999
Q ss_pred EcCCCe--eEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECC
Q 001462 86 DLEESK--MVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFD 163 (1074)
Q Consensus 86 Dl~tgk--~i~tl~~h~~~VtsLafSPdg~~LaSgS~DGsI~IWDi~tg~~v~~l~~h~~~VtsLafSPdG~~LaSgs~D 163 (1074)
|+..-. ....+....-.+++++.+||.+..++++.||.|.|||+.+...+..|++|.+.+.||.+++||..|.+|+.|
T Consensus 493 DLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlD 572 (705)
T KOG0639|consen 493 DLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLD 572 (705)
T ss_pred eccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCc
Confidence 997543 334555555678899999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEECCCCceEEEeeecCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCCcEEEeeCCCCCCeEEEEEecCCCEEEE
Q 001462 164 NVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFS 243 (1074)
Q Consensus 164 GsI~VWDl~tgk~v~~~~~h~g~ItsLafSPdg~lLaTGS~DGtI~IWDl~tg~~i~t~~~~~~~ItsIafSPDG~~Las 243 (1074)
.+|+.||++.+..+.+.. ....|.++.++|.+.+|++|-.++.+.+..... .....+..|...|.++.|.+.|+++++
T Consensus 573 ntvRcWDlregrqlqqhd-F~SQIfSLg~cP~~dWlavGMens~vevlh~sk-p~kyqlhlheScVLSlKFa~cGkwfvS 650 (705)
T KOG0639|consen 573 NTVRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSK-PEKYQLHLHESCVLSLKFAYCGKWFVS 650 (705)
T ss_pred cceeehhhhhhhhhhhhh-hhhhheecccCCCccceeeecccCcEEEEecCC-ccceeecccccEEEEEEecccCceeee
Confidence 999999999998877665 467799999999999999999999998887764 445566778899999999999999998
Q ss_pred -EECCcEEEEEecCCeeeeccccCCceeeEEEecCCCEEEEEECCCeEEEEEc
Q 001462 244 -GFDDNLKVYSWEPVICHDSVDMGWSTLGDLCINDGKLLGCSFYRNSVGIWVA 295 (1074)
Q Consensus 244 -Gsd~~I~Vwd~~s~~~~~~l~~~~s~~~~l~spDGklLAsgs~DGsV~IWDl 295 (1074)
|-|+-+..|..--+..+........++++-.+.|.+|+++|+.|..-.||.+
T Consensus 651 tGkDnlLnawrtPyGasiFqskE~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 651 TGKDNLLNAWRTPYGASIFQSKESSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred cCchhhhhhccCccccceeeccccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 6677788888766666666666667788888899999999999988888865
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.9e-22 Score=219.37 Aligned_cols=250 Identities=24% Similarity=0.452 Sum_probs=214.5
Q ss_pred ccCceEEEEecCCCCEEEEEEecCC--CcEEEEEECCCeEEEEECCCCceE----EEeeCCCCCeEEEEEcCCCCEEEEE
Q 001462 3 KRGYKLQEFVAHSANVNCISIGKKA--CRFLITGGDDQKVNLWAIGKPTAL----MSLCGLSSPVDSVAFDSAEVLVLAG 76 (1074)
Q Consensus 3 ktG~~v~~L~gHs~~Vt~IafSPdg--~~lLaTGs~DGtV~IWDl~t~k~l----~sl~~hs~~ItsLafSpdg~~LatG 76 (1074)
..|+..+.+.||.++|.+++|.-.+ ...|++++.|.++++|.++.+... ..-.+|...|-++...++|..+++|
T Consensus 132 ~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~Sg 211 (423)
T KOG0313|consen 132 LKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSG 211 (423)
T ss_pred cCCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEee
Confidence 5789999999999999988876543 236999999999999998766432 2335999999999999999999999
Q ss_pred EcCCeEEEEEcCC-------------------------CeeEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC
Q 001462 77 ASTGVIKLWDLEE-------------------------SKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRK 131 (1074)
Q Consensus 77 s~DG~I~VWDl~t-------------------------gk~i~tl~~h~~~VtsLafSPdg~~LaSgS~DGsI~IWDi~t 131 (1074)
+.|..|.||+... +.++..+.+|.++|.++.|++ ...+++++.|.+|+.||+.+
T Consensus 212 S~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDlet 290 (423)
T KOG0313|consen 212 SWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLET 290 (423)
T ss_pred cccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeec
Confidence 9999999999321 124567889999999999998 67799999999999999999
Q ss_pred CeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCc---eEEEeeecCCCeEEEEEcCC-CcEEEEEeCCCe
Q 001462 132 KGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGK---LLHDFKFHEGHIRSIDFHPL-EFLLATGSADRT 207 (1074)
Q Consensus 132 g~~v~~l~~h~~~VtsLafSPdG~~LaSgs~DGsI~VWDl~tgk---~v~~~~~h~g~ItsLafSPd-g~lLaTGS~DGt 207 (1074)
+..+..+.+ ...+.|+.++|..++|++|+.|..|++||.+++. ...+|.+|...|.++.|+|. ...|++|+.|++
T Consensus 291 g~~~~~~~~-~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t 369 (423)
T KOG0313|consen 291 GGLKSTLTT-NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNT 369 (423)
T ss_pred ccceeeeec-CcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCe
Confidence 999888874 4568999999999999999999999999998764 45678899999999999995 578899999999
Q ss_pred EEEEECCCCc-EEEeeCCCCCCeEEEEEecCCCEEEE-EECCcEEEEEec
Q 001462 208 VKFWDLETFE-LIGSTRPEVTGVHAITFHPDGRTLFS-GFDDNLKVYSWE 255 (1074)
Q Consensus 208 I~IWDl~tg~-~i~t~~~~~~~ItsIafSPDG~~Las-Gsd~~I~Vwd~~ 255 (1074)
+++||+++-. .+..+.+|...|.++.|... .+|++ |.|+.|+|+.-.
T Consensus 370 ~klWDvRS~k~plydI~~h~DKvl~vdW~~~-~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 370 VKLWDVRSTKAPLYDIAGHNDKVLSVDWNEG-GLIVSGGADNKLRIFKGS 418 (423)
T ss_pred EEEEEeccCCCcceeeccCCceEEEEeccCC-ceEEeccCcceEEEeccc
Confidence 9999999877 89999999999999999854 45565 578889888654
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.7e-23 Score=230.27 Aligned_cols=272 Identities=25% Similarity=0.363 Sum_probs=232.2
Q ss_pred EEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCCe--eEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Q 001462 51 LMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESK--MVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWD 128 (1074)
Q Consensus 51 l~sl~~hs~~ItsLafSpdg~~LatGs~DG~I~VWDl~tgk--~i~tl~~h~~~VtsLafSPdg~~LaSgS~DGsI~IWD 128 (1074)
...+..|.+.+..+.|-++...|++|+.|..|++|++..++ .+.++.+..+.|+.+.|.++++++++++.|+.+++|+
T Consensus 168 ~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wn 247 (459)
T KOG0288|consen 168 LFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWN 247 (459)
T ss_pred hhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeee
Confidence 44567899999999999998999999999999999987766 6778888889999999999999999999999999999
Q ss_pred CCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeeecCCCeEEEEEcCCCcEEEEEeCCCeE
Q 001462 129 IRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTV 208 (1074)
Q Consensus 129 i~tg~~v~~l~~h~~~VtsLafSPdG~~LaSgs~DGsI~VWDl~tgk~v~~~~~h~g~ItsLafSPdg~lLaTGS~DGtI 208 (1074)
+......+++.+|.+.|+++.|......+++|+.|.+|++||+....+..++-. ...+..|+.+ +..+++|..|++|
T Consensus 248 vd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~-~S~cnDI~~~--~~~~~SgH~Dkkv 324 (459)
T KOG0288|consen 248 VDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLP-GSQCNDIVCS--ISDVISGHFDKKV 324 (459)
T ss_pred ccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccccc-cccccceEec--ceeeeecccccce
Confidence 999999999999999999999998777799999999999999999887776652 4456667666 5678899999999
Q ss_pred EEEECCCCcEEEeeCCCCCCeEEEEEecCCCEEEE-EECCcEEEEEecCCeeeeccc-----cCCceeeEEEecCCCEEE
Q 001462 209 KFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFS-GFDDNLKVYSWEPVICHDSVD-----MGWSTLGDLCINDGKLLG 282 (1074)
Q Consensus 209 ~IWDl~tg~~i~t~~~~~~~ItsIafSPDG~~Las-Gsd~~I~Vwd~~s~~~~~~l~-----~~~s~~~~l~spDGklLA 282 (1074)
++||+++..+......+ +.|+++..+++|..|.+ +-|+.+.++|+.+......+. ........+|+|++.|++
T Consensus 325 RfwD~Rs~~~~~sv~~g-g~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~Yva 403 (459)
T KOG0288|consen 325 RFWDIRSADKTRSVPLG-GRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVA 403 (459)
T ss_pred EEEeccCCceeeEeecC-cceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceee
Confidence 99999999988887766 58999999999988777 568889999999877665543 233455678889999999
Q ss_pred EEECCCeEEEEEcCCCceeeeecCCCCCCCCceeEEEEcCCCCcce
Q 001462 283 CSFYRNSVGIWVADVSHVEPYGVGAPEPDQSICTEVKFNPPGSHSL 328 (1074)
Q Consensus 283 sgs~DGsV~IWDld~~~l~~~~~~~~~~~~~~ItsVaFSPDGs~~L 328 (1074)
+|+.||.|+||++.+++++...... .....|+++.|+|-|+.++
T Consensus 404 AGS~dgsv~iW~v~tgKlE~~l~~s--~s~~aI~s~~W~~sG~~Ll 447 (459)
T KOG0288|consen 404 AGSADGSVYIWSVFTGKLEKVLSLS--TSNAAITSLSWNPSGSGLL 447 (459)
T ss_pred eccCCCcEEEEEccCceEEEEeccC--CCCcceEEEEEcCCCchhh
Confidence 9999999999999999988776422 2223799999999999533
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.90 E-value=6e-22 Score=213.88 Aligned_cols=244 Identities=18% Similarity=0.341 Sum_probs=211.1
Q ss_pred eEEEEecCCCCEEEEEEecCCCcEEEEEECCCeEEEEECCCCceEEEeeCCCCCeEEEEEcCCCC--EEEEEEcCCeEEE
Q 001462 7 KLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEV--LVLAGASTGVIKL 84 (1074)
Q Consensus 7 ~v~~L~gHs~~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~k~l~sl~~hs~~ItsLafSpdg~--~LatGs~DG~I~V 84 (1074)
++..|..|.+.|+|++.+. .|+|+|+.|-+|+|||+.+...+..+..|.+.|+++.|.++-. .|++|+.||.|.+
T Consensus 35 ~lF~~~aH~~sitavAVs~---~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~i 111 (362)
T KOG0294|consen 35 PLFAFSAHAGSITALAVSG---PYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIII 111 (362)
T ss_pred ccccccccccceeEEEecc---eeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEE
Confidence 3667899999999999964 7999999999999999999999999999999999999998765 8999999999999
Q ss_pred EEcCCCeeEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCC
Q 001462 85 WDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDN 164 (1074)
Q Consensus 85 WDl~tgk~i~tl~~h~~~VtsLafSPdg~~LaSgS~DGsI~IWDi~tg~~v~~l~~h~~~VtsLafSPdG~~LaSgs~DG 164 (1074)
|+.....++..++.|.+.|+.++.+|.|+.-++.+.|+.++.||+-.|+.-....-. .....+.|+|.|.+|+.++.+
T Consensus 112 w~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~-~~at~v~w~~~Gd~F~v~~~~- 189 (362)
T KOG0294|consen 112 WRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLK-NKATLVSWSPQGDHFVVSGRN- 189 (362)
T ss_pred EEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccC-CcceeeEEcCCCCEEEEEecc-
Confidence 999999999999999999999999999999999999999999999888765554422 234559999999999988865
Q ss_pred eEEEEECCCCceEEEeeecCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCCcEEEeeCCCCCCeEEEEE--ecCCCEEE
Q 001462 165 VVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITF--HPDGRTLF 242 (1074)
Q Consensus 165 sI~VWDl~tgk~v~~~~~h~g~ItsLafSPdg~lLaTGS~DGtI~IWDl~tg~~i~t~~~~~~~ItsIaf--SPDG~~La 242 (1074)
.|-+|.+.+.+....+.. ...+.++.|. ++..|++|+.|+.|.+||.....+...+.+|...|.++.+ .|++.||+
T Consensus 190 ~i~i~q~d~A~v~~~i~~-~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lv 267 (362)
T KOG0294|consen 190 KIDIYQLDNASVFREIEN-PKRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLV 267 (362)
T ss_pred EEEEEecccHhHhhhhhc-cccceeeeec-CCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEE
Confidence 588999988776665553 2456777775 5778999999999999999999999999999999999984 35678888
Q ss_pred E-EECCcEEEEEecCC
Q 001462 243 S-GFDDNLKVYSWEPV 257 (1074)
Q Consensus 243 s-Gsd~~I~Vwd~~s~ 257 (1074)
+ ++||.|+|||++..
T Consensus 268 TaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 268 TASSDGFIKVWDIDME 283 (362)
T ss_pred EeccCceEEEEEcccc
Confidence 7 57888999999865
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.5e-22 Score=215.77 Aligned_cols=289 Identities=17% Similarity=0.341 Sum_probs=239.1
Q ss_pred ceEEEEecCCCCEEEEEEecCCCcEEEEEECCCeEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEE
Q 001462 6 YKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLW 85 (1074)
Q Consensus 6 ~~v~~L~gHs~~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~k~l~sl~~hs~~ItsLafSpdg~~LatGs~DG~I~VW 85 (1074)
..++.|.||.+.|..++..... .++.+++.|.+-+||.++++.++..+.+|.+.|.++.|++.+.++++++.|++-.||
T Consensus 139 ~lvre~~GHkDGiW~Vaa~~tq-pi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW 217 (481)
T KOG0300|consen 139 RLVRELEGHKDGIWHVAADSTQ-PICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIW 217 (481)
T ss_pred eehhhhcccccceeeehhhcCC-cceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHH
Confidence 3567889999999999987765 589999999999999999999999999999999999999999999999999999999
Q ss_pred Ec------CC------------------------------C----eeEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEE
Q 001462 86 DL------EE------------------------------S----KMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLK 125 (1074)
Q Consensus 86 Dl------~t------------------------------g----k~i~tl~~h~~~VtsLafSPdg~~LaSgS~DGsI~ 125 (1074)
.. .. + .++..+.+|...|.++.|...|+.++++++|.+..
T Consensus 218 ~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAn 297 (481)
T KOG0300|consen 218 KAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTAN 297 (481)
T ss_pred HHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccce
Confidence 62 10 0 13456789999999999999999999999999999
Q ss_pred EEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC-ceEEEeeecCCCeEEEEEcCCCcEEEEEeC
Q 001462 126 IWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAG-KLLHDFKFHEGHIRSIDFHPLEFLLATGSA 204 (1074)
Q Consensus 126 IWDi~tg~~v~~l~~h~~~VtsLafSPdG~~LaSgs~DGsI~VWDl~tg-k~v~~~~~h~g~ItsLafSPdg~lLaTGS~ 204 (1074)
+||++++..+..+.+|....+.++-+|..+++++++.|.+.++||++.. ..+..|++|...|+++.|.-+. .+++|+.
T Consensus 298 lwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd-~vVSgSD 376 (481)
T KOG0300|consen 298 LWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDD-RVVSGSD 376 (481)
T ss_pred eeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCC-ceeecCC
Confidence 9999999999999999999999999999999999999999999999843 4577899999999999998765 5778999
Q ss_pred CCeEEEEECCCCc-EEEeeCCCCCCeEEEEEecCCCEEEEEECC-cEEEEEecCCeeeecc----ccCCceeeE-EEecC
Q 001462 205 DRTVKFWDLETFE-LIGSTRPEVTGVHAITFHPDGRTLFSGFDD-NLKVYSWEPVICHDSV----DMGWSTLGD-LCIND 277 (1074)
Q Consensus 205 DGtI~IWDl~tg~-~i~t~~~~~~~ItsIafSPDG~~LasGsd~-~I~Vwd~~s~~~~~~l----~~~~s~~~~-l~spD 277 (1074)
|.+|++||+++.. .+.++. ...++..++.+..+..|+.-.|+ .+++||++....-... ..+...+.+ .|..+
T Consensus 377 DrTvKvWdLrNMRsplATIR-tdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~ee 455 (481)
T KOG0300|consen 377 DRTVKVWDLRNMRSPLATIR-TDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEE 455 (481)
T ss_pred CceEEEeeeccccCcceeee-cCCccceeEeecCCceEEeccCCceEEEEecCCCccccCCcccccccceeeeeeecccc
Confidence 9999999999765 344444 34778999999988899887766 4999999865543221 222223333 33321
Q ss_pred --CCEEEEEECCCeEEEEEcCC
Q 001462 278 --GKLLGCSFYRNSVGIWVADV 297 (1074)
Q Consensus 278 --GklLAsgs~DGsV~IWDld~ 297 (1074)
-.-|++++.|..+.=|.+..
T Consensus 456 hp~cnLftcGFDR~v~gW~in~ 477 (481)
T KOG0300|consen 456 HPACNLFTCGFDRMVAGWKINT 477 (481)
T ss_pred CcccccccccccceeeeeEecc
Confidence 13355566899999998754
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.2e-22 Score=241.61 Aligned_cols=252 Identities=22% Similarity=0.408 Sum_probs=217.6
Q ss_pred eEEEEecCCCCEEEEEEecCCCcEEEEEECCCeEEEEECCC------------------CceEEEeeCCCCCeEEEEEcC
Q 001462 7 KLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGK------------------PTALMSLCGLSSPVDSVAFDS 68 (1074)
Q Consensus 7 ~v~~L~gHs~~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t------------------~k~l~sl~~hs~~ItsLafSp 68 (1074)
.+-+...|.+.|+|+.|+||| .+||+|++|+.|.||.... .+....+.+|...|..++|+|
T Consensus 61 ~l~~m~~h~~sv~CVR~S~dG-~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp 139 (942)
T KOG0973|consen 61 HLCTMDDHDGSVNCVRFSPDG-SYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSP 139 (942)
T ss_pred hheeeccccCceeEEEECCCC-CeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCC
Confidence 455677899999999999999 8999999999999998752 135667889999999999999
Q ss_pred CCCEEEEEEcCCeEEEEEcCCCeeEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeCCC------
Q 001462 69 AEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHT------ 142 (1074)
Q Consensus 69 dg~~LatGs~DG~I~VWDl~tgk~i~tl~~h~~~VtsLafSPdg~~LaSgS~DGsI~IWDi~tg~~v~~l~~h~------ 142 (1074)
++.+|++++.|+.|.||+..+.+.+..+.+|...|-.+.|.|-|+||++-+.|++|+||++.+....+.+.++.
T Consensus 140 ~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~ 219 (942)
T KOG0973|consen 140 DDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLT 219 (942)
T ss_pred CccEEEEecccceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999988877777776543
Q ss_pred CCeEEEEEcCCCCEEEEEEC----CCeEEEEECCCCceEEEeeecCCCeEEEEEcCC-----Cc------------EEEE
Q 001462 143 RGINTIRFTPDGRWVVSGGF----DNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPL-----EF------------LLAT 201 (1074)
Q Consensus 143 ~~VtsLafSPdG~~LaSgs~----DGsI~VWDl~tgk~v~~~~~h~g~ItsLafSPd-----g~------------lLaT 201 (1074)
..+..+.|+|||.+|++... ...+.|.+-.+.+.-..+-+|.+++.++.|+|. .. .+|+
T Consensus 220 T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~Av 299 (942)
T KOG0973|consen 220 TFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAV 299 (942)
T ss_pred ceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEE
Confidence 34788999999999998542 347889998888888899999999999999982 11 7899
Q ss_pred EeCCCeEEEEECCCCcEEEeeC-CCCCCeEEEEEecCCCEEEEE-ECCcEEEEEecCCee
Q 001462 202 GSADRTVKFWDLETFELIGSTR-PEVTGVHAITFHPDGRTLFSG-FDDNLKVYSWEPVIC 259 (1074)
Q Consensus 202 GS~DGtI~IWDl~tg~~i~t~~-~~~~~ItsIafSPDG~~LasG-sd~~I~Vwd~~s~~~ 259 (1074)
|+.|++|.||.....+++.... .....|.+++|+|||..|+++ .||.|.++.++....
T Consensus 300 gSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~El 359 (942)
T KOG0973|consen 300 GSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEKEL 359 (942)
T ss_pred ecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchHHh
Confidence 9999999999998777765543 345679999999999888775 678899999886543
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.7e-22 Score=221.59 Aligned_cols=279 Identities=16% Similarity=0.242 Sum_probs=234.1
Q ss_pred CCCEEEEEEecCCCcEEEEEECCCeEEEEECCC--CceEEEeeCCCCCeEEEEEcCCCC-EEEEEEcCCeEEEEEcCCCe
Q 001462 15 SANVNCISIGKKACRFLITGGDDQKVNLWAIGK--PTALMSLCGLSSPVDSVAFDSAEV-LVLAGASTGVIKLWDLEESK 91 (1074)
Q Consensus 15 s~~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t--~k~l~sl~~hs~~ItsLafSpdg~-~LatGs~DG~I~VWDl~tgk 91 (1074)
.+.|+||.|||.. .+|++|+.||.++||.+.. ...++.+.-...+|.+++|.|+|. .+++++....++.||+.+.+
T Consensus 213 ~~~I~sv~FHp~~-plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak 291 (514)
T KOG2055|consen 213 HGGITSVQFHPTA-PLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAK 291 (514)
T ss_pred cCCceEEEecCCC-ceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccc
Confidence 4789999999998 8999999999999998843 345677777788999999999998 89999999999999999877
Q ss_pred eEEE--EeCC-CCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEE
Q 001462 92 MVRT--LTGH-KSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKV 168 (1074)
Q Consensus 92 ~i~t--l~~h-~~~VtsLafSPdg~~LaSgS~DGsI~IWDi~tg~~v~~l~~h~~~VtsLafSPdG~~LaSgs~DGsI~V 168 (1074)
..+. +.++ ...+....++|++++|+..+..|.|++....++..+..++ ..+.|..++|+.||+.|++++.+|.|++
T Consensus 292 ~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsSdsk~l~~~~~~GeV~v 370 (514)
T KOG2055|consen 292 VTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSSDSKELLASGGTGEVYV 370 (514)
T ss_pred cccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEecCCcEEEEEcCCceEEE
Confidence 5432 2333 2357788899999999999999999999999999999888 5677999999999999999999999999
Q ss_pred EECCCCceEEEeeecCCCe--EEEEEcCCCcEEEEEeCCCeEEEEECCC------CcEEEeeCCCCCCeEEEEEecCCCE
Q 001462 169 WDLTAGKLLHDFKFHEGHI--RSIDFHPLEFLLATGSADRTVKFWDLET------FELIGSTRPEVTGVHAITFHPDGRT 240 (1074)
Q Consensus 169 WDl~tgk~v~~~~~h~g~I--tsLafSPdg~lLaTGS~DGtI~IWDl~t------g~~i~t~~~~~~~ItsIafSPDG~~ 240 (1074)
||++...+++.|.. .+.| +++|.++++.|||+|+..|.|.|||.++ .+++..+......|+++.|++|+++
T Consensus 371 ~nl~~~~~~~rf~D-~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qi 449 (514)
T KOG2055|consen 371 WNLRQNSCLHRFVD-DGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQI 449 (514)
T ss_pred EecCCcceEEEEee-cCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhh
Confidence 99999999998874 3333 5677789999999999999999999763 3456666666778999999999999
Q ss_pred EEEEE---CCcEEEEEecCCeeeeccccC----CceeeEEEecCCCEEEEEECCCeEEEEEcC
Q 001462 241 LFSGF---DDNLKVYSWEPVICHDSVDMG----WSTLGDLCINDGKLLGCSFYRNSVGIWVAD 296 (1074)
Q Consensus 241 LasGs---d~~I~Vwd~~s~~~~~~l~~~----~s~~~~l~spDGklLAsgs~DGsV~IWDld 296 (1074)
|+.++ .+.+++-.+........++.. ..+.++.|+|.|.+||.|..+|.|.+|.+.
T Consensus 450 LAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 450 LAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred hhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 99864 456888888776666555443 345677888999999999999999999763
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.90 E-value=9.9e-22 Score=212.21 Aligned_cols=265 Identities=16% Similarity=0.299 Sum_probs=213.6
Q ss_pred EEEEEECCCeEEEEECCC------------CceEEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeeEEEEe
Q 001462 30 FLITGGDDQKVNLWAIGK------------PTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLT 97 (1074)
Q Consensus 30 lLaTGs~DGtV~IWDl~t------------~k~l~sl~~hs~~ItsLafSpdg~~LatGs~DG~I~VWDl~tgk~i~tl~ 97 (1074)
.|++|++...|.-+++.- ...++.+..|..+|++++.+ +.++++|+.|-+|+|||+.....+..+-
T Consensus 3 ~iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll 80 (362)
T KOG0294|consen 3 EIIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILL 80 (362)
T ss_pred eEEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhccee
Confidence 366777766666665521 12356677899999999986 8999999999999999999999999999
Q ss_pred CCCCCeEEEEEcCCCC--EEEEEECCCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCc
Q 001462 98 GHKSNCTAVEFHPFGE--FFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGK 175 (1074)
Q Consensus 98 ~h~~~VtsLafSPdg~--~LaSgS~DGsI~IWDi~tg~~v~~l~~h~~~VtsLafSPdG~~LaSgs~DGsI~VWDl~tgk 175 (1074)
.|.+.|+++.|.++-. .|++|+.||.|.+|+.....++..+++|.+.|+.++.+|.|++.++.+.|+.++.||+-.|+
T Consensus 81 ~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr 160 (362)
T KOG0294|consen 81 SHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGR 160 (362)
T ss_pred ccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCc
Confidence 9999999999998765 89999999999999999999999999999999999999999999999999999999999988
Q ss_pred eEEEeeecCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCCcEEEeeCCCCCCeEEEEEecCCCEEEEEECCcEEEEEec
Q 001462 176 LLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGFDDNLKVYSWE 255 (1074)
Q Consensus 176 ~v~~~~~h~g~ItsLafSPdg~lLaTGS~DGtI~IWDl~tg~~i~t~~~~~~~ItsIafSPDG~~LasGsd~~I~Vwd~~ 255 (1074)
.-..+.... .-..+.|+|.|.+++.++.+ .|-+|.+.+......+... ..+.++.|...+.+++.+.++.|.+||-+
T Consensus 161 ~a~v~~L~~-~at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~v~~~i~~~-~r~l~~~~l~~~~L~vG~d~~~i~~~D~d 237 (362)
T KOG0294|consen 161 VAFVLNLKN-KATLVSWSPQGDHFVVSGRN-KIDIYQLDNASVFREIENP-KRILCATFLDGSELLVGGDNEWISLKDTD 237 (362)
T ss_pred cceeeccCC-cceeeEEcCCCCEEEEEecc-EEEEEecccHhHhhhhhcc-ccceeeeecCCceEEEecCCceEEEeccC
Confidence 766555322 23459999999999888864 6899999876655544333 45677778755554444566679999999
Q ss_pred CCeeeeccccCCceeeEEEe---cCCCEEEEEECCCeEEEEEcCCCc
Q 001462 256 PVICHDSVDMGWSTLGDLCI---NDGKLLGCSFYRNSVGIWVADVSH 299 (1074)
Q Consensus 256 s~~~~~~l~~~~s~~~~l~s---pDGklLAsgs~DGsV~IWDld~~~ 299 (1074)
...+...+..+...+..+++ +++.||++++.||.|+|||++...
T Consensus 238 s~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~ 284 (362)
T KOG0294|consen 238 SDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDMET 284 (362)
T ss_pred CCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEccccc
Confidence 87776666555544444443 678999999999999999998763
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.3e-21 Score=217.79 Aligned_cols=278 Identities=19% Similarity=0.272 Sum_probs=231.9
Q ss_pred CCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeeEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEE
Q 001462 59 SPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTY 138 (1074)
Q Consensus 59 ~~ItsLafSpdg~~LatGs~DG~I~VWDl~tgk~i~tl~~h~~~VtsLafSPdg~~LaSgS~DGsI~IWDi~tg~~v~~l 138 (1074)
..+.++...+....+++|+.|..+.++|...++.+..+++|...|+.+.|+++...+++++.|..|+||......+....
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~ 299 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSS 299 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCcccc
Confidence 45778888887789999999999999999999999999999999999999999999999999999999999888778888
Q ss_pred eCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeee--cCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCC
Q 001462 139 KGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKF--HEGHIRSIDFHPLEFLLATGSADRTVKFWDLETF 216 (1074)
Q Consensus 139 ~~h~~~VtsLafSPdG~~LaSgs~DGsI~VWDl~tgk~v~~~~~--h~g~ItsLafSPdg~lLaTGS~DGtI~IWDl~tg 216 (1074)
..|..+|+.+..+|.|.||++++.||.+.+.|+++|..+..... ..-.+++.+|+|||.+|.+|..||.|+|||+..+
T Consensus 300 ~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~ 379 (506)
T KOG0289|consen 300 RPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQ 379 (506)
T ss_pred ccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCc
Confidence 88999999999999999999999999999999999998877653 2235899999999999999999999999999999
Q ss_pred cEEEeeCCCCCCeEEEEEecCCCEEEEEECCc-EEEEEecCCeeeeccccCC--ceeeEEEecCCCEEEEEECCCeEEEE
Q 001462 217 ELIGSTRPEVTGVHAITFHPDGRTLFSGFDDN-LKVYSWEPVICHDSVDMGW--STLGDLCINDGKLLGCSFYRNSVGIW 293 (1074)
Q Consensus 217 ~~i~t~~~~~~~ItsIafSPDG~~LasGsd~~-I~Vwd~~s~~~~~~l~~~~--s~~~~l~spDGklLAsgs~DGsV~IW 293 (1074)
..+..|.+|.++|..|+|+.+|.||+++.+++ +++||++.......+.... ......+-..|.+|+.++.|=.|+++
T Consensus 380 ~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~ 459 (506)
T KOG0289|consen 380 TNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYIC 459 (506)
T ss_pred cccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEE
Confidence 99999999999999999999999999987776 9999999887766665433 34555555789999999776666665
Q ss_pred EcCCCceeeeecCCCCCCCCceeEEEEcCCCCcceeEEEEEeccCcceEE
Q 001462 294 VADVSHVEPYGVGAPEPDQSICTEVKFNPPGSHSLEKVGIIGRSTSGFRS 343 (1074)
Q Consensus 294 Dld~~~l~~~~~~~~~~~~~~ItsVaFSPDGs~~Lv~vlavG~stG~~r~ 343 (1074)
+- ....|........|.+..++|.|..... +++.+...-.+++
T Consensus 460 ~k--~~k~W~~~~~~~~~sg~st~v~Fg~~aq-----~l~s~smd~~l~~ 502 (506)
T KOG0289|consen 460 KK--KTKSWTEIKELADHSGLSTGVRFGEHAQ-----YLASTSMDAILRL 502 (506)
T ss_pred ec--ccccceeeehhhhcccccceeeecccce-----EEeeccchhheEE
Confidence 43 2333333333345567888899988666 5555555543443
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.3e-20 Score=203.31 Aligned_cols=265 Identities=14% Similarity=0.182 Sum_probs=203.2
Q ss_pred cCceEEEEecCCCCEEEEEEecCCCcEEEEEECCCeEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEEE-EcCCeE
Q 001462 4 RGYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAG-ASTGVI 82 (1074)
Q Consensus 4 tG~~v~~L~gHs~~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~k~l~sl~~hs~~ItsLafSpdg~~LatG-s~DG~I 82 (1074)
+++.++.+.+|. .+.+++|+|++..++++++.++.|++||..+++....+..+.. +..++|+|+++.++++ +.++.|
T Consensus 20 t~~~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l 97 (300)
T TIGR03866 20 TLEVTRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELFALHPNGKILYIANEDDNLV 97 (300)
T ss_pred CCceEEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEEEECCCCCEEEEEcCCCCeE
Confidence 566777777664 4788999999954556778899999999998887776665433 5678999999977665 458999
Q ss_pred EEEEcCCCeeEEEEeCCCCCeEEEEEcCCCCEEEEEECCC-eEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEE
Q 001462 83 KLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDT-NLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGG 161 (1074)
Q Consensus 83 ~VWDl~tgk~i~tl~~h~~~VtsLafSPdg~~LaSgS~DG-sI~IWDi~tg~~v~~l~~h~~~VtsLafSPdG~~LaSgs 161 (1074)
.+||+.+++.+..+.. ...+.+++|+|+|++++++..++ .+.+||..++.....+.. ...+.+++|+++|.+|++++
T Consensus 98 ~~~d~~~~~~~~~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~ 175 (300)
T TIGR03866 98 TVIDIETRKVLAEIPV-GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLV-DQRPRFAEFTADGKELWVSS 175 (300)
T ss_pred EEEECCCCeEEeEeeC-CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEc-CCCccEEEECCCCCEEEEEc
Confidence 9999998887777753 34568899999999999988765 467789988877665542 33467899999999886554
Q ss_pred -CCCeEEEEECCCCceEEEeeecCC-------CeEEEEEcCCCcEEEEE-eCCCeEEEEECCCCcEEEeeCCCCCCeEEE
Q 001462 162 -FDNVVKVWDLTAGKLLHDFKFHEG-------HIRSIDFHPLEFLLATG-SADRTVKFWDLETFELIGSTRPEVTGVHAI 232 (1074)
Q Consensus 162 -~DGsI~VWDl~tgk~v~~~~~h~g-------~ItsLafSPdg~lLaTG-S~DGtI~IWDl~tg~~i~t~~~~~~~ItsI 232 (1074)
.++.|++||+.+++.+..+..+.. ....++|+|++.+++++ +.++.|.+||+.+++.+..+. +...+.++
T Consensus 176 ~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~ 254 (300)
T TIGR03866 176 EIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLL-VGQRVWQL 254 (300)
T ss_pred CCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE-eCCCcceE
Confidence 589999999999987776653211 23568899999986554 456789999999888776543 33568899
Q ss_pred EEecCCCEEEEE--ECCcEEEEEecCCeeeeccccCCceeeEE
Q 001462 233 TFHPDGRTLFSG--FDDNLKVYSWEPVICHDSVDMGWSTLGDL 273 (1074)
Q Consensus 233 afSPDG~~LasG--sd~~I~Vwd~~s~~~~~~l~~~~s~~~~l 273 (1074)
+|+|+|.+|+++ .++.|.+||++.......+..+..+....
T Consensus 255 ~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~ 297 (300)
T TIGR03866 255 AFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVGRLPWGVV 297 (300)
T ss_pred EECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEcccccceeE
Confidence 999999999875 36789999999988877776655554433
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.9e-22 Score=229.80 Aligned_cols=277 Identities=21% Similarity=0.387 Sum_probs=231.3
Q ss_pred eEEEEecCCCCEEEEEEecCCCcEEEEEECCCeEEEEECCCCceE--EEeeCCCCCeEE-EEEcC-CCCEEEEEEcCCeE
Q 001462 7 KLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTAL--MSLCGLSSPVDS-VAFDS-AEVLVLAGASTGVI 82 (1074)
Q Consensus 7 ~v~~L~gHs~~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~k~l--~sl~~hs~~Its-LafSp-dg~~LatGs~DG~I 82 (1074)
.-+.+.||...|..+++.+.. .+++++.||++++|+-...+.+ ..+.+|.+-|.+ ++|.+ ++-.|++|+.|+.|
T Consensus 6 ls~~l~gH~~DVr~v~~~~~~--~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i 83 (745)
T KOG0301|consen 6 LSHELEGHKSDVRAVAVTDGV--CIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTI 83 (745)
T ss_pred eEEEeccCccchheeEecCCe--EEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceE
Confidence 446789999999999988765 7999999999999997444433 345667776666 77775 44569999999999
Q ss_pred EEEEcCCCeeEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEEC
Q 001462 83 KLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGF 162 (1074)
Q Consensus 83 ~VWDl~tgk~i~tl~~h~~~VtsLafSPdg~~LaSgS~DGsI~IWDi~tg~~v~~l~~h~~~VtsLafSPdG~~LaSgs~ 162 (1074)
.+|......+...+++|...|+++....++. +++|++|.++++|-+ +++...+.+|...|+++++.|++ .+++|+.
T Consensus 84 ~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~--~~l~~~l~gH~asVWAv~~l~e~-~~vTgsa 159 (745)
T KOG0301|consen 84 IVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRI--GELVYSLQGHTASVWAVASLPEN-TYVTGSA 159 (745)
T ss_pred EEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecc--hhhhcccCCcchheeeeeecCCC-cEEeccC
Confidence 9999999999999999999999999887777 999999999999975 55666799999999999999988 7999999
Q ss_pred CCeEEEEECCCCceEEEeeecCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCCcEEEeeCCCCCCeEEEEEecCCCEEE
Q 001462 163 DNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLF 242 (1074)
Q Consensus 163 DGsI~VWDl~tgk~v~~~~~h~g~ItsLafSPdg~lLaTGS~DGtI~IWDl~tg~~i~t~~~~~~~ItsIafSPDG~~La 242 (1074)
|..|++|.- ++.+..|.+|...|+.+++-+++. +++++.||.|++|++ +|+++..+.+|...+.++....++..++
T Consensus 160 DKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~-flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Iv 235 (745)
T KOG0301|consen 160 DKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSH-FLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIV 235 (745)
T ss_pred cceeeeccC--CchhhhhccchhheeeeEEecCCC-eEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEE
Confidence 999999984 889999999999999999998754 667889999999999 7899999999999999999555555555
Q ss_pred -EEECCcEEEEEecCCeeeeccccCC-ceeeEEEecCCCEEEEEECCCeEEEEEcC
Q 001462 243 -SGFDDNLKVYSWEPVICHDSVDMGW-STLGDLCINDGKLLGCSFYRNSVGIWVAD 296 (1074)
Q Consensus 243 -sGsd~~I~Vwd~~s~~~~~~l~~~~-s~~~~l~spDGklLAsgs~DGsV~IWDld 296 (1074)
+|-|++++||+.+ .+...+..+. .++.+.+..+|. +++|+.||.|+||..+
T Consensus 236 s~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 236 STGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGD-IVVGGSDGRVRVFTVD 288 (745)
T ss_pred EecCCceEEEeecC--ceEEEEecCccceEEEEEeeCCC-EEEeccCceEEEEEec
Confidence 5678889999987 6667676665 455555556666 5667799999999765
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.9e-23 Score=235.60 Aligned_cols=283 Identities=20% Similarity=0.344 Sum_probs=229.7
Q ss_pred CCCCEE---EEEEecCCCcEEEEEECCCeEEEEECCCCc------eEEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEE
Q 001462 14 HSANVN---CISIGKKACRFLITGGDDQKVNLWAIGKPT------ALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKL 84 (1074)
Q Consensus 14 Hs~~Vt---~IafSPdg~~lLaTGs~DGtV~IWDl~t~k------~l~sl~~hs~~ItsLafSpdg~~LatGs~DG~I~V 84 (1074)
|...|. .+..+..+.+||++||.||.|++|++.... .+..+..|..-|..+....+++.|++++.|-+|++
T Consensus 20 n~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~ 99 (735)
T KOG0308|consen 20 NRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKV 99 (735)
T ss_pred ccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEE
Confidence 455566 566666666899999999999999984332 35667789999999999999999999999999999
Q ss_pred EEcCCC--eeEEEEeCCCCCeEEEEE-cCCCCEEEEEECCCeEEEEECCCCe--EEEE--------Ee-CCCCCeEEEEE
Q 001462 85 WDLEES--KMVRTLTGHKSNCTAVEF-HPFGEFFASGCMDTNLKIWDIRKKG--CIHT--------YK-GHTRGINTIRF 150 (1074)
Q Consensus 85 WDl~tg--k~i~tl~~h~~~VtsLaf-SPdg~~LaSgS~DGsI~IWDi~tg~--~v~~--------l~-~h~~~VtsLaf 150 (1074)
|+...+ -++.++..|.+.|.|+++ .++...+|+||.|+.|.+||+.++. .+.. +. ++...|++++.
T Consensus 100 W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~ 179 (735)
T KOG0308|consen 100 WNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAM 179 (735)
T ss_pred eecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeec
Confidence 999876 467788899999999999 7788899999999999999999773 2222 22 67788999999
Q ss_pred cCCCCEEEEEECCCeEEEEECCCCceEEEeeecCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCCcEEEeeCCCCCCeE
Q 001462 151 TPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVH 230 (1074)
Q Consensus 151 SPdG~~LaSgs~DGsI~VWDl~tgk~v~~~~~h~g~ItsLafSPdg~lLaTGS~DGtI~IWDl~tg~~i~t~~~~~~~It 230 (1074)
.+.|..|++|+..+.|++||.++++.+..+.+|...|.++..++||..+++++.||+|++||+...+++.++..|...++
T Consensus 180 N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VW 259 (735)
T KOG0308|consen 180 NQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVW 259 (735)
T ss_pred CCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCEEEEE-ECCcEEEEEecCC-eeeeccccCCceeeEEEecCCCEEEEEECCCeEEEEEcC
Q 001462 231 AITFHPDGRTLFSG-FDDNLKVYSWEPV-ICHDSVDMGWSTLGDLCINDGKLLGCSFYRNSVGIWVAD 296 (1074)
Q Consensus 231 sIafSPDG~~LasG-sd~~I~Vwd~~s~-~~~~~l~~~~s~~~~l~spDGklLAsgs~DGsV~IWDld 296 (1074)
++..+|+=.++++| .++.|..-++... .+.................+.+-+-+++.|+.|+-|...
T Consensus 260 aL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~ 327 (735)
T KOG0308|consen 260 ALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLE 327 (735)
T ss_pred EEeeCCCcceEEecCCCCcEEecccCCchhheEeecCCCchhhhhhccccCCceeeeccccceecCCc
Confidence 99999999999987 4566777677653 222222222122222222122223556689999999653
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.89 E-value=9.5e-22 Score=222.19 Aligned_cols=284 Identities=18% Similarity=0.266 Sum_probs=213.4
Q ss_pred EEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCCe----eEEEE-eCCCCCeEEEEEcCCCCEEEEEECCCeEEE
Q 001462 52 MSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESK----MVRTL-TGHKSNCTAVEFHPFGEFFASGCMDTNLKI 126 (1074)
Q Consensus 52 ~sl~~hs~~ItsLafSpdg~~LatGs~DG~I~VWDl~tgk----~i~tl-~~h~~~VtsLafSPdg~~LaSgS~DGsI~I 126 (1074)
..+.+|+..|.++++.|.|..|++|+.|..|++||+.... ..+.+ .+....|.++.|++.|..|++.+.....++
T Consensus 161 i~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl 240 (641)
T KOG0772|consen 161 IQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKL 240 (641)
T ss_pred EeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeE
Confidence 4567788999999999999999999999999999997532 12222 234567999999999999999988999999
Q ss_pred EECCCCeEEEE------------EeCCCCCeEEEEEcCCC-CEEEEEECCCeEEEEECCCCce-EEEee-----ecCCCe
Q 001462 127 WDIRKKGCIHT------------YKGHTRGINTIRFTPDG-RWVVSGGFDNVVKVWDLTAGKL-LHDFK-----FHEGHI 187 (1074)
Q Consensus 127 WDi~tg~~v~~------------l~~h~~~VtsLafSPdG-~~LaSgs~DGsI~VWDl~tgk~-v~~~~-----~h~g~I 187 (1074)
+|-........ -++|...++|.+|+|+. ..|++++.||++++||+...+. ...++ +..-++
T Consensus 241 ~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~ 320 (641)
T KOG0772|consen 241 LDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPV 320 (641)
T ss_pred EccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCc
Confidence 99543333222 24788899999999965 4789999999999999987643 33333 223458
Q ss_pred EEEEEcCCCcEEEEEeCCCeEEEEECCCCcE---EEeeCCCCC--CeEEEEEecCCCEEEE-EECCcEEEEEecCCee-e
Q 001462 188 RSIDFHPLEFLLATGSADRTVKFWDLETFEL---IGSTRPEVT--GVHAITFHPDGRTLFS-GFDDNLKVYSWEPVIC-H 260 (1074)
Q Consensus 188 tsLafSPdg~lLaTGS~DGtI~IWDl~tg~~---i~t~~~~~~--~ItsIafSPDG~~Las-Gsd~~I~Vwd~~s~~~-~ 260 (1074)
+.++|+++|++||+|+.||.|.+|+..+... ...-..|.. .|++|.|++||++|++ |.|+.+++||++.... +
T Consensus 321 tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL 400 (641)
T KOG0772|consen 321 TSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPL 400 (641)
T ss_pred eeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccch
Confidence 8999999999999999999999999864321 222334544 7999999999999999 8899999999986542 2
Q ss_pred ---eccccCCceeeEEEecCCCEEEEEEC------CCeEEEEEcCCCceeeeecCCCCCCCCceeEEEEcCCCCcceeEE
Q 001462 261 ---DSVDMGWSTLGDLCINDGKLLGCSFY------RNSVGIWVADVSHVEPYGVGAPEPDQSICTEVKFNPPGSHSLEKV 331 (1074)
Q Consensus 261 ---~~l~~~~s~~~~l~spDGklLAsgs~------DGsV~IWDld~~~l~~~~~~~~~~~~~~ItsVaFSPDGs~~Lv~v 331 (1074)
..+...+....+.|+||.++|++|.. .|.+.+||..+-... +.+ ......|..+.|+|-=+ -
T Consensus 401 ~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v-~ki---~i~~aSvv~~~WhpkLN-----Q 471 (641)
T KOG0772|consen 401 NVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTV-YKI---DISTASVVRCLWHPKLN-----Q 471 (641)
T ss_pred hhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeE-EEe---cCCCceEEEEeecchhh-----h
Confidence 22344566678889999999999863 467888876432222 222 22367888999999766 5
Q ss_pred EEEeccCcceEEe
Q 001462 332 GIIGRSTSGFRST 344 (1074)
Q Consensus 332 lavG~stG~~r~i 344 (1074)
++.|..+|..+.+
T Consensus 472 i~~gsgdG~~~vy 484 (641)
T KOG0772|consen 472 IFAGSGDGTAHVY 484 (641)
T ss_pred eeeecCCCceEEE
Confidence 6677777755444
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.9e-20 Score=194.01 Aligned_cols=283 Identities=17% Similarity=0.298 Sum_probs=229.0
Q ss_pred ecCCCCEEEEEEecCCCcEEEEEECCCeEEEEECCC----------Cc-e----EEEeeCCCCCeEEEEEcCCCCEEEEE
Q 001462 12 VAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGK----------PT-A----LMSLCGLSSPVDSVAFDSAEVLVLAG 76 (1074)
Q Consensus 12 ~gHs~~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t----------~k-~----l~sl~~hs~~ItsLafSpdg~~LatG 76 (1074)
...+..|.+++|+|.| .+.++|+...+++|..... .+ . ...-+.|.+.|+|.+|+|+|.+|++|
T Consensus 29 l~dsqairav~fhp~g-~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatg 107 (350)
T KOG0641|consen 29 LEDSQAIRAVAFHPAG-GLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATG 107 (350)
T ss_pred ecchhheeeEEecCCC-ceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEec
Confidence 3456789999999999 7899999999999875421 11 1 12234688999999999999999999
Q ss_pred EcCCeEEEEEcCCCe-----eEEEEeCCCCCeEEEEEcCC----CCEEEEEE-CCCeEEEEECCCCeEEEEEeCCCCCeE
Q 001462 77 ASTGVIKLWDLEESK-----MVRTLTGHKSNCTAVEFHPF----GEFFASGC-MDTNLKIWDIRKKGCIHTYKGHTRGIN 146 (1074)
Q Consensus 77 s~DG~I~VWDl~tgk-----~i~tl~~h~~~VtsLafSPd----g~~LaSgS-~DGsI~IWDi~tg~~v~~l~~h~~~Vt 146 (1074)
+.|..|++..+.... .-.++.-|.+.|..++|..+ +..|++++ .|..|++-|...|+..+.+.+|.+.|.
T Consensus 108 sndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghil 187 (350)
T KOG0641|consen 108 SNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHIL 187 (350)
T ss_pred CCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEE
Confidence 999999998765432 12456679999999999754 45677664 377888889999999999999999887
Q ss_pred EEEEcCCCCEEEEEECCCeEEEEECCCCceEEEee--ec-----CCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCCcEE
Q 001462 147 TIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFK--FH-----EGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELI 219 (1074)
Q Consensus 147 sLafSPdG~~LaSgs~DGsI~VWDl~tgk~v~~~~--~h-----~g~ItsLafSPdg~lLaTGS~DGtI~IWDl~tg~~i 219 (1074)
++ ++-+|-.|++|+.|.+|++||++-..++..+. .| ...|.+++..|.|++|++|..|....+||++.+..+
T Consensus 188 al-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~i 266 (350)
T KOG0641|consen 188 AL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMI 266 (350)
T ss_pred EE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCcee
Confidence 75 33468899999999999999999888877664 22 256899999999999999999999999999999999
Q ss_pred EeeCCCCCCeEEEEEecCCCEEEEE-ECCcEEEEEecCCeeee-----ccccCCceeeEEEecCCCEEEEEECCCeEEEE
Q 001462 220 GSTRPEVTGVHAITFHPDGRTLFSG-FDDNLKVYSWEPVICHD-----SVDMGWSTLGDLCINDGKLLGCSFYRNSVGIW 293 (1074)
Q Consensus 220 ~t~~~~~~~ItsIafSPDG~~LasG-sd~~I~Vwd~~s~~~~~-----~l~~~~s~~~~l~spDGklLAsgs~DGsV~IW 293 (1074)
..+.+|...|+++.|+|...||+++ .|..|++-|+.....+. .-.+....+.+.|.+..--+++.+.|.++.+|
T Consensus 267 q~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlw 346 (350)
T KOG0641|consen 267 QRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLW 346 (350)
T ss_pred eeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEEe
Confidence 9999999999999999999999997 56779999987543222 12344556777788888888889999999999
Q ss_pred EcC
Q 001462 294 VAD 296 (1074)
Q Consensus 294 Dld 296 (1074)
-+.
T Consensus 347 a~~ 349 (350)
T KOG0641|consen 347 ALN 349 (350)
T ss_pred ccC
Confidence 653
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.5e-22 Score=231.97 Aligned_cols=289 Identities=21% Similarity=0.339 Sum_probs=238.3
Q ss_pred eEEEEecCCCCEEEEEEecCCCcEEEEEECCCeEEEEECCCC--ceEEEeeCCCCCeEEEEE-cCCCCEEEEEEcCCeEE
Q 001462 7 KLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKP--TALMSLCGLSSPVDSVAF-DSAEVLVLAGASTGVIK 83 (1074)
Q Consensus 7 ~v~~L~gHs~~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~--k~l~sl~~hs~~ItsLaf-Spdg~~LatGs~DG~I~ 83 (1074)
.+..++.|.++|+.+....++ +.|++++.|-+|++|+...+ -+...+..|...|.|+++ .++...+|+||-|+.|+
T Consensus 65 ~~asme~HsDWVNDiiL~~~~-~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~If 143 (735)
T KOG0308|consen 65 YIASMEHHSDWVNDIILCGNG-KTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIF 143 (735)
T ss_pred hhhhhhhhHhHHhhHHhhcCC-CceEEecCCceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEE
Confidence 366788999999999999998 68999999999999999776 567788899999999999 78888999999999999
Q ss_pred EEEcCCCe--eE--------EEEe-CCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeCCCCCeEEEEEcC
Q 001462 84 LWDLEESK--MV--------RTLT-GHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTP 152 (1074)
Q Consensus 84 VWDl~tgk--~i--------~tl~-~h~~~VtsLafSPdg~~LaSgS~DGsI~IWDi~tg~~v~~l~~h~~~VtsLafSP 152 (1074)
+||+..+. .+ ..+. ++...|++++.++.|..|++|+..+.|++||.++++.+..+.+|...|.++..+.
T Consensus 144 lWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~d 223 (735)
T KOG0308|consen 144 LWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVND 223 (735)
T ss_pred EEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcC
Confidence 99999772 22 2223 7788999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEEECCCeEEEEECCCCceEEEeeecCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCCcEEEeeCCCCCCeEEE
Q 001462 153 DGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAI 232 (1074)
Q Consensus 153 dG~~LaSgs~DGsI~VWDl~tgk~v~~~~~h~g~ItsLafSPdg~lLaTGS~DGtI~IWDl~tg~~i~t~~~~~~~ItsI 232 (1074)
||..+++++.||+|++||+...+++.++..|...|+++..+|+-..+++|+.||.|..=|+++......+.....+|..+
T Consensus 224 DGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l 303 (735)
T KOG0308|consen 224 DGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKL 303 (735)
T ss_pred CCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeecCCCchhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999865444444455667777
Q ss_pred EEecC-CCEEEEEECCcEEEEEecCCeeeec-------------------------cccCCceeeEEEecCCCEEEEEEC
Q 001462 233 TFHPD-GRTLFSGFDDNLKVYSWEPVICHDS-------------------------VDMGWSTLGDLCINDGKLLGCSFY 286 (1074)
Q Consensus 233 afSPD-G~~LasGsd~~I~Vwd~~s~~~~~~-------------------------l~~~~s~~~~l~spDGklLAsgs~ 286 (1074)
..+.. ....++..+..|+-|.......... +..+..........|.+++++-..
T Consensus 304 ~~~~~~~~~WvtTtds~I~rW~~~~~~~l~~s~~~~~~~T~~~~~~~~~~~tp~~vi~Gg~ai~k~~mL~dkRhVlTkDa 383 (735)
T KOG0308|consen 304 HLHEHDNSVWVTTTDSSIKRWKLEPDIALSVSGDLDFFSTDSNNHSCDLTNTPDSVIPGGAAIKKHAMLNDKRHVLTKDA 383 (735)
T ss_pred hhccccCCceeeeccccceecCCccccccccCCCCCcccccCCCccccccCCCceeccCchhhhhhhhhcCcceEeeecC
Confidence 66633 3335666777777777553221110 111112222223357889999999
Q ss_pred CCeEEEEEcC
Q 001462 287 RNSVGIWVAD 296 (1074)
Q Consensus 287 DGsV~IWDld 296 (1074)
.|.+.+||+-
T Consensus 384 ~gnv~lwDIl 393 (735)
T KOG0308|consen 384 KGNVALWDIL 393 (735)
T ss_pred CCCEEEEEee
Confidence 9999999973
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.2e-21 Score=210.44 Aligned_cols=270 Identities=20% Similarity=0.320 Sum_probs=220.9
Q ss_pred EEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCC------------C------eeEEEEeCCCCCeEEEEEcCCCC
Q 001462 52 MSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEE------------S------KMVRTLTGHKSNCTAVEFHPFGE 113 (1074)
Q Consensus 52 ~sl~~hs~~ItsLafSpdg~~LatGs~DG~I~VWDl~t------------g------k~i~tl~~h~~~VtsLafSPdg~ 113 (1074)
..+..|..++.+.+|++||.++++|+.|..|+|+|++. | -.++++..|.++|.++.|+|...
T Consensus 106 ~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ 185 (430)
T KOG0640|consen 106 KYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRET 185 (430)
T ss_pred EEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhh
Confidence 44568999999999999999999999999999999861 1 25678889999999999999999
Q ss_pred EEEEEECCCeEEEEECCCCeEE---EEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEee---ecCCCe
Q 001462 114 FFASGCMDTNLKIWDIRKKGCI---HTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFK---FHEGHI 187 (1074)
Q Consensus 114 ~LaSgS~DGsI~IWDi~tg~~v---~~l~~h~~~VtsLafSPdG~~LaSgs~DGsI~VWDl~tgk~v~~~~---~h~g~I 187 (1074)
.|++|+.|++|++||+..-... +.+. ...+|.++.|+|.|.+|++|..-..+++||+.+.++...-. .|.+.|
T Consensus 186 ILiS~srD~tvKlFDfsK~saKrA~K~~q-d~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai 264 (430)
T KOG0640|consen 186 ILISGSRDNTVKLFDFSKTSAKRAFKVFQ-DTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAI 264 (430)
T ss_pred eEEeccCCCeEEEEecccHHHHHHHHHhh-ccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccce
Confidence 9999999999999998754322 2222 45679999999999999999999999999999988765443 588899
Q ss_pred EEEEEcCCCcEEEEEeCCCeEEEEECCCCcEEEeeCC-CC-CCeEEEEEecCCCEEEE-EECCcEEEEEecCCeeeeccc
Q 001462 188 RSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRP-EV-TGVHAITFHPDGRTLFS-GFDDNLKVYSWEPVICHDSVD 264 (1074)
Q Consensus 188 tsLafSPdg~lLaTGS~DGtI~IWDl~tg~~i~t~~~-~~-~~ItsIafSPDG~~Las-Gsd~~I~Vwd~~s~~~~~~l~ 264 (1074)
+++.+++.+++.++|+.||.|++||--+++++.++.. |. ..|.+..|..+|+|+++ |.|..+++|.+.++.+...+.
T Consensus 265 ~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~Yt 344 (430)
T KOG0640|consen 265 TQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYT 344 (430)
T ss_pred eEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEe
Confidence 9999999999999999999999999999999888754 32 35899999999999998 567779999999998887765
Q ss_pred cCC------ceeeEEEecCCCEEEEEE-CCCeEEEEEcCCCceeeeecCCCCCCCCceeEEEEcCCCC
Q 001462 265 MGW------STLGDLCINDGKLLGCSF-YRNSVGIWVADVSHVEPYGVGAPEPDQSICTEVKFNPPGS 325 (1074)
Q Consensus 265 ~~~------s~~~~l~spDGklLAsgs-~DGsV~IWDld~~~l~~~~~~~~~~~~~~ItsVaFSPDGs 325 (1074)
... .....+|.+...|++.-. ..+.+.-||........+. ..+|.+.+..+.-||.+.
T Consensus 345 GAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~---slgHn~a~R~i~HSP~~p 409 (430)
T KOG0640|consen 345 GAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALL---SLGHNGAVRWIVHSPVEP 409 (430)
T ss_pred cCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhc---ccCCCCCceEEEeCCCCC
Confidence 431 112334445566666554 3478999998766544332 268899999999999888
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.7e-20 Score=207.54 Aligned_cols=308 Identities=18% Similarity=0.250 Sum_probs=236.1
Q ss_pred EEecCCCCEEEEEEecCCC-cEEEEE--ECCCeEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEE
Q 001462 10 EFVAHSANVNCISIGKKAC-RFLITG--GDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWD 86 (1074)
Q Consensus 10 ~L~gHs~~Vt~IafSPdg~-~lLaTG--s~DGtV~IWDl~t~k~l~sl~~hs~~ItsLafSpdg~~LatGs~DG~I~VWD 86 (1074)
.+-.....|.|++|++-.+ .+|+.- +.+..+.+||...+......+..+..|..+.|+|.+..|++.+..|++..|+
T Consensus 149 V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~ 228 (626)
T KOG2106|consen 149 VIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITCGKGHLYFWT 228 (626)
T ss_pred eeccccccceeeeecccCCCceEEEecCCCccccchhhchhhhccCcceeccceEEEEEeccCCCcEEEEeCCceEEEEE
Confidence 3444567899999998543 444433 3456789999998888888888888999999999777666666789999999
Q ss_pred cCCCeeEEE---EeC-CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEEC
Q 001462 87 LEESKMVRT---LTG-HKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGF 162 (1074)
Q Consensus 87 l~tgk~i~t---l~~-h~~~VtsLafSPdg~~LaSgS~DGsI~IWDi~tg~~v~~l~~h~~~VtsLafSPdG~~LaSgs~ 162 (1074)
++.+.+.+. +.. ....|.|++|.++|+ +++|..+|.|.||+.......+....|.+.|.+++...+|. |++|+.
T Consensus 229 ~~~~~l~k~~~~fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~Gt-llSGgK 306 (626)
T KOG2106|consen 229 LRGGSLVKRQGIFEKREKKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGT-LLSGGK 306 (626)
T ss_pred ccCCceEEEeeccccccceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCcc-EeecCc
Confidence 998866543 222 246799999999988 78999999999999988777777779999999999999997 455999
Q ss_pred CCeEEEEECCCC----------------------c------------------eEEEeeecCCCeEEEEEcCCCcEEEEE
Q 001462 163 DNVVKVWDLTAG----------------------K------------------LLHDFKFHEGHIRSIDFHPLEFLLATG 202 (1074)
Q Consensus 163 DGsI~VWDl~tg----------------------k------------------~v~~~~~h~g~ItsLafSPdg~lLaTG 202 (1074)
|..|..||-.-. . ......+|......++.+|+.+.++++
T Consensus 307 DRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~ 386 (626)
T KOG2106|consen 307 DRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTC 386 (626)
T ss_pred cceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeec
Confidence 999999983210 0 011123577778899999999999999
Q ss_pred eCCCeEEEEECCCCcEEEeeCCCCCCeEEEEEecCCCEEEEEE-CCcEEEEEecCCeeeeccccCCceeeEEEecCCCEE
Q 001462 203 SADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGF-DDNLKVYSWEPVICHDSVDMGWSTLGDLCINDGKLL 281 (1074)
Q Consensus 203 S~DGtI~IWDl~tg~~i~t~~~~~~~ItsIafSPDG~~LasGs-d~~I~Vwd~~s~~~~~~l~~~~s~~~~l~spDGklL 281 (1074)
+.|+.+++|+ ..++.... ....+..++.|+|.| .++.|. .|...+.|.++...+..-........+.++|+|.+|
T Consensus 387 gqdk~v~lW~--~~k~~wt~-~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~l 462 (626)
T KOG2106|consen 387 GQDKHVRLWN--DHKLEWTK-IIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFL 462 (626)
T ss_pred cCcceEEEcc--CCceeEEE-EecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEecCCceEEEEEcCCCCEE
Confidence 9999999999 33333332 234667999999999 778775 556778888876655544444445556677999999
Q ss_pred EEEECCCeEEEEEcCCCceeeeecCCCCCCCCceeEEEEcCCCC
Q 001462 282 GCSFYRNSVGIWVADVSHVEPYGVGAPEPDQSICTEVKFNPPGS 325 (1074)
Q Consensus 282 Asgs~DGsV~IWDld~~~l~~~~~~~~~~~~~~ItsVaFSPDGs 325 (1074)
|.|+.|+.|+||.++.........+. -+..+|+.+.||+|++
T Consensus 463 Avgs~d~~iyiy~Vs~~g~~y~r~~k--~~gs~ithLDwS~Ds~ 504 (626)
T KOG2106|consen 463 AVGSHDNHIYIYRVSANGRKYSRVGK--CSGSPITHLDWSSDSQ 504 (626)
T ss_pred EEecCCCeEEEEEECCCCcEEEEeee--ecCceeEEeeecCCCc
Confidence 99999999999998765554444433 3348999999999999
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.4e-21 Score=207.18 Aligned_cols=240 Identities=20% Similarity=0.363 Sum_probs=198.6
Q ss_pred cCCCCEEEEEEecCCCcEEEEEECCCeEEEEECCCC-ce-EEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCC
Q 001462 13 AHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKP-TA-LMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEES 90 (1074)
Q Consensus 13 gHs~~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~-k~-l~sl~~hs~~ItsLafSpdg~~LatGs~DG~I~VWDl~tg 90 (1074)
.-.+.|.+|+|||....++++|+.||+|++|+++.. .. ......|.++|.+++|+.+|..+++|+.|+.+++||+.++
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~ 104 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG 104 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC
Confidence 346789999999966578889999999999999662 32 2345678999999999999999999999999999999999
Q ss_pred eeEEEEeCCCCCeEEEEEcCCCC--EEEEEECCCeEEEEECCCCeEEEEEeC----------------------------
Q 001462 91 KMVRTLTGHKSNCTAVEFHPFGE--FFASGCMDTNLKIWDIRKKGCIHTYKG---------------------------- 140 (1074)
Q Consensus 91 k~i~tl~~h~~~VtsLafSPdg~--~LaSgS~DGsI~IWDi~tg~~v~~l~~---------------------------- 140 (1074)
+. ..+..|.++|.++.|-+... .|++|+.|++|++||.+...++..+.-
T Consensus 105 Q~-~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vynL 183 (347)
T KOG0647|consen 105 QV-SQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLYPMAVVATAERHIAVYNL 183 (347)
T ss_pred Ce-eeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccCceeEEEecCCcEEEEEc
Confidence 54 55667999999999987665 899999999999999987655443320
Q ss_pred -------------CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC--ceEEEeeecCC---------CeEEEEEcCCC
Q 001462 141 -------------HTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAG--KLLHDFKFHEG---------HIRSIDFHPLE 196 (1074)
Q Consensus 141 -------------h~~~VtsLafSPdG~~LaSgs~DGsI~VWDl~tg--k~v~~~~~h~g---------~ItsLafSPdg 196 (1074)
....+.|++..+|....+.|+-+|.+.+..+..+ +.-..|++|.. .|.+|+|+|..
T Consensus 184 ~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~h 263 (347)
T KOG0647|consen 184 ENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVH 263 (347)
T ss_pred CCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeeccc
Confidence 1224678888888877899999999999888776 55566777762 47789999999
Q ss_pred cEEEEEeCCCeEEEEECCCCcEEEeeCCCCCCeEEEEEecCCCEEEEEECCcEEEEEecCCe
Q 001462 197 FLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGFDDNLKVYSWEPVI 258 (1074)
Q Consensus 197 ~lLaTGS~DGtI~IWDl~tg~~i~t~~~~~~~ItsIafSPDG~~LasGsd~~I~Vwd~~s~~ 258 (1074)
..|++++.||++.+||-.....+.....+..+|++..|+.+|.+++.+. -|||..+.
T Consensus 264 gtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA~-----gYDWSkGh 320 (347)
T KOG0647|consen 264 GTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYAL-----GYDWSKGH 320 (347)
T ss_pred ceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEEe-----eccccccc
Confidence 9999999999999999998888888889999999999999999998763 36676553
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.4e-20 Score=220.41 Aligned_cols=325 Identities=18% Similarity=0.282 Sum_probs=259.7
Q ss_pred ccCceEEEEecCCCCEEEEEEecCCCcEEEEEECCCeEEEEECCCCceEEEee-CCCCCeEEEEEcCCCCEEEEEEcCCe
Q 001462 3 KRGYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLC-GLSSPVDSVAFDSAEVLVLAGASTGV 81 (1074)
Q Consensus 3 ktG~~v~~L~gHs~~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~k~l~sl~-~hs~~ItsLafSpdg~~LatGs~DG~ 81 (1074)
+.++.+..|+.-.+.|+.++|.-||..++++|+..|.+.+||++..+....+. .|.+.|....|.+....+++.+.|..
T Consensus 232 K~dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnS 311 (910)
T KOG1539|consen 232 KFDKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNS 311 (910)
T ss_pred ccCcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCc
Confidence 45667778876569999999999998899999999999999998887776665 78899999999999999999999998
Q ss_pred EEEEEcC--CC--eeEEEEeCCCCCeEEEEEc-CCCCEEEEEECCCeEEEEECC--------------------------
Q 001462 82 IKLWDLE--ES--KMVRTLTGHKSNCTAVEFH-PFGEFFASGCMDTNLKIWDIR-------------------------- 130 (1074)
Q Consensus 82 I~VWDl~--tg--k~i~tl~~h~~~VtsLafS-Pdg~~LaSgS~DGsI~IWDi~-------------------------- 130 (1074)
+++|=.+ +| +.++.-.+|..+-.|+.|. .+|.++.+++.|++++.+++.
T Consensus 312 lk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~ 391 (910)
T KOG1539|consen 312 LKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTE 391 (910)
T ss_pred eeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchh
Confidence 8888554 33 3455556788888888887 567777777777766555432
Q ss_pred ---------------------------------------CCeE-EEEEe-----CCCCCeEEEEEcCCCCEEEEEECCCe
Q 001462 131 ---------------------------------------KKGC-IHTYK-----GHTRGINTIRFTPDGRWVVSGGFDNV 165 (1074)
Q Consensus 131 ---------------------------------------tg~~-v~~l~-----~h~~~VtsLafSPdG~~LaSgs~DGs 165 (1074)
.... .+.+. .....+.+++.++.|++.+.|...|.
T Consensus 392 ~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~ 471 (910)
T KOG1539|consen 392 KLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGT 471 (910)
T ss_pred hhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCe
Confidence 1111 01111 12245789999999999999999999
Q ss_pred EEEEECCCCceEEEe---eecCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCCcEEEeeCCCCCCeEEEEEecCCCEEE
Q 001462 166 VKVWDLTAGKLLHDF---KFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLF 242 (1074)
Q Consensus 166 I~VWDl~tgk~v~~~---~~h~g~ItsLafSPdg~lLaTGS~DGtI~IWDl~tg~~i~t~~~~~~~ItsIafSPDG~~La 242 (1074)
|-+|++++|-....| ..|.++|+.++...-++.+++++.+|.+.+||..+...+..+... ..+.++..+.....++
T Consensus 472 Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~-~~~~~iv~hr~s~l~a 550 (910)
T KOG1539|consen 472 IDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLG-SSITGIVYHRVSDLLA 550 (910)
T ss_pred EEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccC-CCcceeeeeehhhhhh
Confidence 999999999888888 489999999999988999999999999999999988877766543 5678888888877777
Q ss_pred EEEC-CcEEEEEecCCeeeeccc-cCCceeeEEEecCCCEEEEEECCCeEEEEEcCCCceeeeecCCCCCCCCceeEEEE
Q 001462 243 SGFD-DNLKVYSWEPVICHDSVD-MGWSTLGDLCINDGKLLGCSFYRNSVGIWVADVSHVEPYGVGAPEPDQSICTEVKF 320 (1074)
Q Consensus 243 sGsd-~~I~Vwd~~s~~~~~~l~-~~~s~~~~l~spDGklLAsgs~DGsV~IWDld~~~l~~~~~~~~~~~~~~ItsVaF 320 (1074)
.+.+ -.|.++|..+......+. +...+....+++||++|++++.|++|++||+-++.+.... .....++++.|
T Consensus 551 ~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~-----~vd~~~~sls~ 625 (910)
T KOG1539|consen 551 IALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGL-----LVDSPCTSLSF 625 (910)
T ss_pred hhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeE-----ecCCcceeeEE
Confidence 7654 469999999888877776 4445566677799999999999999999999877665443 34678999999
Q ss_pred cCCCCcceeEEEEEeccC
Q 001462 321 NPPGSHSLEKVGIIGRST 338 (1074)
Q Consensus 321 SPDGs~~Lv~vlavG~st 338 (1074)
||+|+ +++..|.+
T Consensus 626 SPngD-----~LAT~Hvd 638 (910)
T KOG1539|consen 626 SPNGD-----FLATVHVD 638 (910)
T ss_pred CCCCC-----EEEEEEec
Confidence 99999 66666654
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=8e-21 Score=226.58 Aligned_cols=276 Identities=17% Similarity=0.288 Sum_probs=230.6
Q ss_pred ecCCCCEEEEEEecCCCcEEEEEECCCeEEEEECCCC-ceEEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCC
Q 001462 12 VAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKP-TALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEES 90 (1074)
Q Consensus 12 ~gHs~~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~-k~l~sl~~hs~~ItsLafSpdg~~LatGs~DG~I~VWDl~tg 90 (1074)
.+|++.-+.|+|.|+| .+|++++.||.|++|+.... +....+..+...|.+++.. +.+|++|+.++.|.+|.+..+
T Consensus 10 yaht~G~t~i~~d~~g-efi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps~ 86 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDG-EFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACY--SNHFLTGSEQNTVLRYKFPSG 86 (933)
T ss_pred hhccCceEEEEEcCCC-CEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeec--ccceEEeeccceEEEeeCCCC
Confidence 3689999999999999 69999999999999998665 4444454477778877764 558999999999999999988
Q ss_pred eeEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Q 001462 91 KMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWD 170 (1074)
Q Consensus 91 k~i~tl~~h~~~VtsLafSPdg~~LaSgS~DGsI~IWDi~tg~~v~~l~~h~~~VtsLafSPdG~~LaSgs~DGsI~VWD 170 (1074)
+.-..+....-++.+++|+.+|++++.|+.|-.|++.+.........+.+|..+|.++.|+|.+.+||+.+.||.|++||
T Consensus 87 ~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~ 166 (933)
T KOG1274|consen 87 EEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWD 166 (933)
T ss_pred CccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEE
Confidence 87666666778899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceEEEeee-------c-CCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCCcEEEeeCC--CCCCeEEEEEecCCCE
Q 001462 171 LTAGKLLHDFKF-------H-EGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRP--EVTGVHAITFHPDGRT 240 (1074)
Q Consensus 171 l~tgk~v~~~~~-------h-~g~ItsLafSPdg~lLaTGS~DGtI~IWDl~tg~~i~t~~~--~~~~ItsIafSPDG~~ 240 (1074)
+.++.+...+.+ . ...+..++|+|+|..|+..+.|+.|++|+...++....+.. +...+..++|+|+|+|
T Consensus 167 ~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~Y 246 (933)
T KOG1274|consen 167 LQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKY 246 (933)
T ss_pred cccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcE
Confidence 999877665542 1 34467889999988888888899999999999998887764 3345899999999999
Q ss_pred EEEE-ECCcEEEEEecCCeeeeccccCCceeeEEEecCCCEEEEEECCCeEEEE
Q 001462 241 LFSG-FDDNLKVYSWEPVICHDSVDMGWSTLGDLCINDGKLLGCSFYRNSVGIW 293 (1074)
Q Consensus 241 LasG-sd~~I~Vwd~~s~~~~~~l~~~~s~~~~l~spDGklLAsgs~DGsV~IW 293 (1074)
||++ .++.|.|||+++. ........+++..|-+++..+-+-...|...+|
T Consensus 247 iAAs~~~g~I~vWnv~t~---~~~~~~~~Vc~~aw~p~~n~it~~~~~g~~~~~ 297 (933)
T KOG1274|consen 247 IAASTLDGQILVWNVDTH---ERHEFKRAVCCEAWKPNANAITLITALGTLGVS 297 (933)
T ss_pred EeeeccCCcEEEEecccc---hhccccceeEEEecCCCCCeeEEEeeccccccC
Confidence 9996 5778999999982 222333455566666888877777777776666
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.9e-21 Score=218.45 Aligned_cols=248 Identities=24% Similarity=0.428 Sum_probs=209.6
Q ss_pred EEEecCCCCEEEEEEecCCCcEEEEEECCCeEEEEECCCC----------ceEEEeeCCCCCeEEEEEcCCC-CEEEEEE
Q 001462 9 QEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKP----------TALMSLCGLSSPVDSVAFDSAE-VLVLAGA 77 (1074)
Q Consensus 9 ~~L~gHs~~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~----------k~l~sl~~hs~~ItsLafSpdg-~~LatGs 77 (1074)
.....|.+.|+-+.+-|..+.++++++..+.|+|||..+. ..-..+.+|...-++++|++.. -.|++++
T Consensus 118 ~~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~ 197 (422)
T KOG0264|consen 118 SQKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGS 197 (422)
T ss_pred EEeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeecc
Confidence 3445799999999999999999999999999999998442 1223678899888899999854 4788999
Q ss_pred cCCeEEEEEcCCCe-------eEEEEeCCCCCeEEEEEcCC-CCEEEEEECCCeEEEEECC--CCeEEEEEeCCCCCeEE
Q 001462 78 STGVIKLWDLEESK-------MVRTLTGHKSNCTAVEFHPF-GEFFASGCMDTNLKIWDIR--KKGCIHTYKGHTRGINT 147 (1074)
Q Consensus 78 ~DG~I~VWDl~tgk-------~i~tl~~h~~~VtsLafSPd-g~~LaSgS~DGsI~IWDi~--tg~~v~~l~~h~~~Vts 147 (1074)
.|+.|.+||+.... ....+.+|...|..++|++. ...|++++.|+.+.|||++ +.++.+...+|...|.|
T Consensus 198 ~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~ 277 (422)
T KOG0264|consen 198 DDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNC 277 (422)
T ss_pred CCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeE
Confidence 99999999997432 35667899999999999995 4578888999999999999 56667778899999999
Q ss_pred EEEcC-CCCEEEEEECCCeEEEEECCCC-ceEEEeeecCCCeEEEEEcCC-CcEEEEEeCCCeEEEEECCCC--------
Q 001462 148 IRFTP-DGRWVVSGGFDNVVKVWDLTAG-KLLHDFKFHEGHIRSIDFHPL-EFLLATGSADRTVKFWDLETF-------- 216 (1074)
Q Consensus 148 LafSP-dG~~LaSgs~DGsI~VWDl~tg-k~v~~~~~h~g~ItsLafSPd-g~lLaTGS~DGtI~IWDl~tg-------- 216 (1074)
++|+| ++..||+|+.|++|.+||++.. +.++.+.+|...|.++.|+|+ ..+|++++.|+.+.+||+...
T Consensus 278 ~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~ed 357 (422)
T KOG0264|consen 278 VAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPED 357 (422)
T ss_pred EEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhh
Confidence 99999 5567889999999999999875 568889999999999999996 578999999999999999742
Q ss_pred ------cEEEeeCCCCCCeEEEEEecCCCEEEEE--ECCcEEEEEecC
Q 001462 217 ------ELIGSTRPEVTGVHAITFHPDGRTLFSG--FDDNLKVYSWEP 256 (1074)
Q Consensus 217 ------~~i~t~~~~~~~ItsIafSPDG~~LasG--sd~~I~Vwd~~s 256 (1074)
+++....+|...|..+.|+|+..+++++ .|+.+.||.+..
T Consensus 358 a~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 358 AEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred hccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 2356677888999999999999888774 466799999864
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.1e-20 Score=203.93 Aligned_cols=284 Identities=17% Similarity=0.261 Sum_probs=217.1
Q ss_pred EEEEecCCCCEEEEEEecCCCcEEEEEECCCeEEEEECCCCceEE----EeeCCCCCeEEEEEcCCCCEEEEEEc-CCeE
Q 001462 8 LQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALM----SLCGLSSPVDSVAFDSAEVLVLAGAS-TGVI 82 (1074)
Q Consensus 8 v~~L~gHs~~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~k~l~----sl~~hs~~ItsLafSpdg~~LatGs~-DG~I 82 (1074)
+..|++|.+.|+|++|+.|| ++|++++.|+.|+||++.+..... .....-+..+.+.|.||-+-+++... ...+
T Consensus 79 ~~~LKgH~~~vt~~~FsSdG-K~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l 157 (420)
T KOG2096|consen 79 VSVLKGHKKEVTDVAFSSDG-KKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKL 157 (420)
T ss_pred hhhhhccCCceeeeEEcCCC-ceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEE
Confidence 34689999999999999999 899999999999999986532210 01111235688999999876666554 4579
Q ss_pred EEEEcCC---CeeEE---------EEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeCCCCCeEEEEE
Q 001462 83 KLWDLEE---SKMVR---------TLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRF 150 (1074)
Q Consensus 83 ~VWDl~t---gk~i~---------tl~~h~~~VtsLafSPdg~~LaSgS~DGsI~IWDi~tg~~v~~l~~h~~~VtsLaf 150 (1074)
++|.+.. |.... .-..|.-.+..+-..-++.+|++++.|..|.+|+++ |+.+..+......-+..+.
T Consensus 158 ~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aav 236 (420)
T KOG2096|consen 158 CVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAV 236 (420)
T ss_pred EEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeeccccccccceee
Confidence 9997643 22111 112355567777777788999999999999999998 8888888877777788999
Q ss_pred cCCCCEEEEEECCCeEEEEECC---CC-----ceEEEeeecCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCC----C--
Q 001462 151 TPDGRWVVSGGFDNVVKVWDLT---AG-----KLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLET----F-- 216 (1074)
Q Consensus 151 SPdG~~LaSgs~DGsI~VWDl~---tg-----k~v~~~~~h~g~ItsLafSPdg~lLaTGS~DGtI~IWDl~t----g-- 216 (1074)
+|+|+++++++..-.|++|.+- .| ..+.++++|...|..++|+++...+++.+.||++++||++- +
T Consensus 237 SP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qD 316 (420)
T KOG2096|consen 237 SPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQD 316 (420)
T ss_pred CCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCC
Confidence 9999999999999999999863 22 23567889999999999999999999999999999999862 1
Q ss_pred -cEEEee----CCCCCCeEEEEEecCCCEEEEEECCcEEEEEecCCeeeeccc--cCCceeeEEEecCCCEEEEEECCCe
Q 001462 217 -ELIGST----RPEVTGVHAITFHPDGRTLFSGFDDNLKVYSWEPVICHDSVD--MGWSTLGDLCINDGKLLGCSFYRNS 289 (1074)
Q Consensus 217 -~~i~t~----~~~~~~ItsIafSPDG~~LasGsd~~I~Vwd~~s~~~~~~l~--~~~s~~~~l~spDGklLAsgs~DGs 289 (1074)
+.+... ....+....+.++|.|+.|+.+....|++|.-+.+.....+. +...+.+..|.++|+++++++ |..
T Consensus 317 pk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcG-dr~ 395 (420)
T KOG2096|consen 317 PKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCG-DRY 395 (420)
T ss_pred chHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeec-cee
Confidence 112222 111233458999999999999999999999998876555443 334566777789999999985 777
Q ss_pred EEEEE
Q 001462 290 VGIWV 294 (1074)
Q Consensus 290 V~IWD 294 (1074)
++++.
T Consensus 396 vrv~~ 400 (420)
T KOG2096|consen 396 VRVIR 400 (420)
T ss_pred eeeec
Confidence 88774
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=7.1e-20 Score=216.44 Aligned_cols=356 Identities=20% Similarity=0.261 Sum_probs=282.0
Q ss_pred ccCceEEEEecCCCCEEEEEEecCCCcEEEEEECCCeEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCE-EEEEEcCCe
Q 001462 3 KRGYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVL-VLAGASTGV 81 (1074)
Q Consensus 3 ktG~~v~~L~gHs~~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~k~l~sl~~hs~~ItsLafSpdg~~-LatGs~DG~ 81 (1074)
++++.+.+|.+|.+.|+++.-+|-- ..++.|..+|+|.|+++..++.+..++...+.|+.++|..||.. +++|+..|.
T Consensus 190 rt~K~v~~f~~~~s~IT~ieqsPaL-DVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~ 268 (910)
T KOG1539|consen 190 RTGKVVYTFQEFFSRITAIEQSPAL-DVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGD 268 (910)
T ss_pred ccCcEEEEecccccceeEeccCCcc-eEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEeccCCce
Confidence 5788999999999999999999987 78999999999999999999999999855699999999999974 566666799
Q ss_pred EEEEEcCCCeeEEEEe-CCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC--C--eEEEEEeCCCCCeEEEEEc-CCCC
Q 001462 82 IKLWDLEESKMVRTLT-GHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRK--K--GCIHTYKGHTRGINTIRFT-PDGR 155 (1074)
Q Consensus 82 I~VWDl~tgk~i~tl~-~h~~~VtsLafSPdg~~LaSgS~DGsI~IWDi~t--g--~~v~~l~~h~~~VtsLafS-PdG~ 155 (1074)
+.+||++..+.+..+. .|.+.|....|.+....+++++.|..+++|=..+ | ..++.-.+|..+..|+.|. .+|.
T Consensus 269 m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~ 348 (910)
T KOG1539|consen 269 MAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGH 348 (910)
T ss_pred EEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcE
Confidence 9999999988877766 6889999999999999999999999988885543 3 2355556888888999987 5777
Q ss_pred EEEEEECCCeEEEEECC---------------------------------------------------------------
Q 001462 156 WVVSGGFDNVVKVWDLT--------------------------------------------------------------- 172 (1074)
Q Consensus 156 ~LaSgs~DGsI~VWDl~--------------------------------------------------------------- 172 (1074)
++.+++.|++++.+++.
T Consensus 349 ~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~ 428 (910)
T KOG1539|consen 349 FILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWN 428 (910)
T ss_pred EEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEe
Confidence 78888888766665432
Q ss_pred --CCce-EEEee-----ecCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCCcEEEee---CCCCCCeEEEEEecCCCEE
Q 001462 173 --AGKL-LHDFK-----FHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGST---RPEVTGVHAITFHPDGRTL 241 (1074)
Q Consensus 173 --tgk~-v~~~~-----~h~g~ItsLafSPdg~lLaTGS~DGtI~IWDl~tg~~i~t~---~~~~~~ItsIafSPDG~~L 241 (1074)
.... .+.+. .....+.+++.++.|++.+.|...|.|.+|++.+|-....+ ..|.++|++++...-++.+
T Consensus 429 ~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~ 508 (910)
T KOG1539|consen 429 FRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLL 508 (910)
T ss_pred ccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceE
Confidence 1110 00111 12256789999999999999999999999999999888888 4788999999999988888
Q ss_pred EE-EECCcEEEEEecCCeeeeccccCCceeeEEEecCCCEEEEEECCCeEEEEEcCCCceeeeecCCCCCCCCceeEEEE
Q 001462 242 FS-GFDDNLKVYSWEPVICHDSVDMGWSTLGDLCINDGKLLGCSFYRNSVGIWVADVSHVEPYGVGAPEPDQSICTEVKF 320 (1074)
Q Consensus 242 as-Gsd~~I~Vwd~~s~~~~~~l~~~~s~~~~l~spDGklLAsgs~DGsV~IWDld~~~l~~~~~~~~~~~~~~ItsVaF 320 (1074)
++ |.+|-+++|++........+..+..+...+......+++.+..|-.|.++|..+.++.... .+|...|+.++|
T Consensus 509 vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f----~gh~nritd~~F 584 (910)
T KOG1539|consen 509 VSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREF----WGHGNRITDMTF 584 (910)
T ss_pred EEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHh----hccccceeeeEe
Confidence 87 5677899999999998888888888888888888899999999999999998766654443 588999999999
Q ss_pred cCCCCcceeEEEEEeccCcceEEeecCCcccc-eEEEeecCCCCccceeeecCCC
Q 001462 321 NPPGSHSLEKVGIIGRSTSGFRSTSPDYETKD-IKTIYVDSTGGKPVASQKIGPL 374 (1074)
Q Consensus 321 SPDGs~~Lv~vlavG~stG~~r~ivpD~et~e-I~~i~iDs~gGepv~~~~~sP~ 374 (1074)
||||+ -+.+....+.++.+ |.-++. |--+..| .|...+.|+|-
T Consensus 585 S~Dgr-----WlisasmD~tIr~w--Dlpt~~lID~~~vd----~~~~sls~SPn 628 (910)
T KOG1539|consen 585 SPDGR-----WLISASMDSTIRTW--DLPTGTLIDGLLVD----SPCTSLSFSPN 628 (910)
T ss_pred CCCCc-----EEEEeecCCcEEEE--eccCcceeeeEecC----CcceeeEECCC
Confidence 99999 44444454443333 222222 2223334 45556666665
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.7e-20 Score=223.87 Aligned_cols=261 Identities=16% Similarity=0.226 Sum_probs=217.1
Q ss_pred eCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCC-eeEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCe
Q 001462 55 CGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEES-KMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKG 133 (1074)
Q Consensus 55 ~~hs~~ItsLafSpdg~~LatGs~DG~I~VWDl~tg-k~i~tl~~h~~~VtsLafSPdg~~LaSgS~DGsI~IWDi~tg~ 133 (1074)
..|..+.+.++|.++|.+|++++.||.|++|+.... +....+..+...|.+++.. +.+|++|+.++.|.+|.+..+.
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps~~ 87 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACY--SNHFLTGSEQNTVLRYKFPSGE 87 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeec--ccceEEeeccceEEEeeCCCCC
Confidence 368888999999999999999999999999987655 3334444367777777765 5589999999999999999887
Q ss_pred EEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeeecCCCeEEEEEcCCCcEEEEEeCCCeEEEEEC
Q 001462 134 CIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDL 213 (1074)
Q Consensus 134 ~v~~l~~h~~~VtsLafSPdG~~LaSgs~DGsI~VWDl~tgk~v~~~~~h~g~ItsLafSPdg~lLaTGS~DGtI~IWDl 213 (1074)
.-..+....-++.+++|+.+|++++.|+.|-.|++.++.+......+.+|.++|.++.|+|.+++||+.+.||.|++||+
T Consensus 88 ~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~ 167 (933)
T KOG1274|consen 88 EDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDL 167 (933)
T ss_pred ccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEc
Confidence 66556556678999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEeeCCC--------CCCeEEEEEecC-CCEEEEEECCcEEEEEecCCeeeeccccC---CceeeEEEecCCCEE
Q 001462 214 ETFELIGSTRPE--------VTGVHAITFHPD-GRTLFSGFDDNLKVYSWEPVICHDSVDMG---WSTLGDLCINDGKLL 281 (1074)
Q Consensus 214 ~tg~~i~t~~~~--------~~~ItsIafSPD-G~~LasGsd~~I~Vwd~~s~~~~~~l~~~---~s~~~~l~spDGklL 281 (1074)
.++.+...+..- ...+..++|+|+ |.+++.+.++.+++|+...+.....+... .......|+|.|+||
T Consensus 168 ~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~Yi 247 (933)
T KOG1274|consen 168 QDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYI 247 (933)
T ss_pred ccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEE
Confidence 988776655331 223677899999 56666689999999998887766554322 225566788999999
Q ss_pred EEEECCCeEEEEEcCCCceeeeecCCCCCCCCceeEEEEcCCCC
Q 001462 282 GCSFYRNSVGIWVADVSHVEPYGVGAPEPDQSICTEVKFNPPGS 325 (1074)
Q Consensus 282 Asgs~DGsV~IWDld~~~l~~~~~~~~~~~~~~ItsVaFSPDGs 325 (1074)
|+++.||.|.|||++.... ......|.+++|.|+++
T Consensus 248 AAs~~~g~I~vWnv~t~~~--------~~~~~~Vc~~aw~p~~n 283 (933)
T KOG1274|consen 248 AASTLDGQILVWNVDTHER--------HEFKRAVCCEAWKPNAN 283 (933)
T ss_pred eeeccCCcEEEEecccchh--------ccccceeEEEecCCCCC
Confidence 9999999999999986211 23467899999999998
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.4e-21 Score=205.64 Aligned_cols=276 Identities=17% Similarity=0.311 Sum_probs=234.6
Q ss_pred eEEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeeEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEC
Q 001462 50 ALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDI 129 (1074)
Q Consensus 50 ~l~sl~~hs~~ItsLafSpdg~~LatGs~DG~I~VWDl~tgk~i~tl~~h~~~VtsLafSPdg~~LaSgS~DGsI~IWDi 129 (1074)
....+.+|..+|+.++-......+.+++.|.+-+||.+++|.++..+.+|.+.|.++.|++.+.++++++.|++..||..
T Consensus 140 lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~ 219 (481)
T KOG0300|consen 140 LVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKA 219 (481)
T ss_pred ehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHHH
Confidence 34567899999999999887789999999999999999999999999999999999999999999999999999999952
Q ss_pred C------C----------------------------------CeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEE
Q 001462 130 R------K----------------------------------KGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVW 169 (1074)
Q Consensus 130 ~------t----------------------------------g~~v~~l~~h~~~VtsLafSPdG~~LaSgs~DGsI~VW 169 (1074)
. . ..++..+.+|...|.+..|...|+.+++++.|.+-.+|
T Consensus 220 av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlw 299 (481)
T KOG0300|consen 220 AVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLW 299 (481)
T ss_pred hhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceee
Confidence 1 0 01355677899999999999999999999999999999
Q ss_pred ECCCCceEEEeeecCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCC-CcEEEeeCCCCCCeEEEEEecCCCEEEEEECCc
Q 001462 170 DLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLET-FELIGSTRPEVTGVHAITFHPDGRTLFSGFDDN 248 (1074)
Q Consensus 170 Dl~tgk~v~~~~~h~g~ItsLafSPdg~lLaTGS~DGtI~IWDl~t-g~~i~t~~~~~~~ItsIafSPDG~~LasGsd~~ 248 (1074)
|+++|.++..+.+|+...+.++-+|..+++++.+.|.+.++||++. -..+..|++|...|+++.|.-+.+.+....|.+
T Consensus 300 DVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd~vVSgSDDrT 379 (481)
T KOG0300|consen 300 DVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDDRVVSGSDDRT 379 (481)
T ss_pred eeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCCceeecCCCce
Confidence 9999999999999999999999999999999999999999999984 345678999999999999998876544445667
Q ss_pred EEEEEecCCe-eeeccccCCceeeEEEecCCCEEEEEECCCeEEEEEcCCCceeeeecCCCCCCCCceeEEEEcCCCC
Q 001462 249 LKVYSWEPVI-CHDSVDMGWSTLGDLCINDGKLLGCSFYRNSVGIWVADVSHVEPYGVGAPEPDQSICTEVKFNPPGS 325 (1074)
Q Consensus 249 I~Vwd~~s~~-~~~~l~~~~s~~~~l~spDGklLAsgs~DGsV~IWDld~~~l~~~~~~~~~~~~~~ItsVaFSPDGs 325 (1074)
++|||+.... ....+...........+..+.+++.--.+..|++||+.+..+..+......+|...|+|++|..+--
T Consensus 380 vKvWdLrNMRsplATIRtdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp 457 (481)
T KOG0300|consen 380 VKVWDLRNMRSPLATIRTDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHP 457 (481)
T ss_pred EEEeeeccccCcceeeecCCccceeEeecCCceEEeccCCceEEEEecCCCccccCCcccccccceeeeeeeccccCc
Confidence 9999998754 3444555544555555556668888877789999999988888777656678999999999987443
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.3e-20 Score=211.61 Aligned_cols=231 Identities=23% Similarity=0.440 Sum_probs=204.0
Q ss_pred ecCCCCEEEEEEecCCCcEEEEEECCCeEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCCe
Q 001462 12 VAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESK 91 (1074)
Q Consensus 12 ~gHs~~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~k~l~sl~~hs~~ItsLafSpdg~~LatGs~DG~I~VWDl~tgk 91 (1074)
.+|...|.|++.++|| +||++|+.|..|.||+..+.+.+..+.+|.+.|.+++|-.....|++++.|+.|++|+++...
T Consensus 199 ~~h~keil~~avS~Dg-kylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s 277 (479)
T KOG0299|consen 199 KGHVKEILTLAVSSDG-KYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLS 277 (479)
T ss_pred ccccceeEEEEEcCCC-cEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhH
Confidence 4899999999999999 999999999999999999999999999999999999999888899999999999999999998
Q ss_pred eEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEC
Q 001462 92 MVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDL 171 (1074)
Q Consensus 92 ~i~tl~~h~~~VtsLafSPdg~~LaSgS~DGsI~IWDi~tg~~v~~l~~h~~~VtsLafSPdG~~LaSgs~DGsI~VWDl 171 (1074)
.+.++.+|...|..|....-++.+-+|+.|+++++|++.. .....+.++.+.+-|++|-.+ .+|++|+.+|.|.+|++
T Consensus 278 ~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~e-esqlifrg~~~sidcv~~In~-~HfvsGSdnG~IaLWs~ 355 (479)
T KOG0299|consen 278 YVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPE-ESQLIFRGGEGSIDCVAFIND-EHFVSGSDNGSIALWSL 355 (479)
T ss_pred HHHHHhCCccceeeechhcccceEEeccccceeEEEeccc-cceeeeeCCCCCeeeEEEecc-cceeeccCCceEEEeee
Confidence 9999999999999999998888888888999999999943 334556778889999999854 57999999999999999
Q ss_pred CCCceEEEee-ec-----------CCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCC----cEEEeeCCCCCCeEEEEEe
Q 001462 172 TAGKLLHDFK-FH-----------EGHIRSIDFHPLEFLLATGSADRTVKFWDLETF----ELIGSTRPEVTGVHAITFH 235 (1074)
Q Consensus 172 ~tgk~v~~~~-~h-----------~g~ItsLafSPdg~lLaTGS~DGtI~IWDl~tg----~~i~t~~~~~~~ItsIafS 235 (1074)
...+++.... +| ..+|++++..|..+++++|+.+|.|++|-+..+ .++..+. ..+.|++++|+
T Consensus 356 ~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls-~~GfVNsl~f~ 434 (479)
T KOG0299|consen 356 LKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS-LVGFVNSLAFS 434 (479)
T ss_pred cccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc-cccEEEEEEEc
Confidence 9888877654 12 227999999999999999999999999999876 3444443 56789999999
Q ss_pred cCCCEEEEEEC
Q 001462 236 PDGRTLFSGFD 246 (1074)
Q Consensus 236 PDG~~LasGsd 246 (1074)
++|+.|++|..
T Consensus 435 ~sgk~ivagiG 445 (479)
T KOG0299|consen 435 NSGKRIVAGIG 445 (479)
T ss_pred cCCCEEEEecc
Confidence 99998888743
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.6e-20 Score=215.70 Aligned_cols=238 Identities=22% Similarity=0.426 Sum_probs=214.2
Q ss_pred EEEecCCCCEEE-EEEecCCCcEEEEEECCCeEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEc
Q 001462 9 QEFVAHSANVNC-ISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDL 87 (1074)
Q Consensus 9 ~~L~gHs~~Vt~-IafSPdg~~lLaTGs~DGtV~IWDl~t~k~l~sl~~hs~~ItsLafSpdg~~LatGs~DG~I~VWDl 87 (1074)
+.|.+|.+.|.+ ++|-+.....|++|+.|++|.+|......++..+.+|...|.|+....++. +++|+.|.++++|..
T Consensus 51 ~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~ 129 (745)
T KOG0301|consen 51 HAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRI 129 (745)
T ss_pred eecccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecc
Confidence 347788898988 888764335699999999999999999999999999999999999888887 999999999999975
Q ss_pred CCCeeEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEE
Q 001462 88 EESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVK 167 (1074)
Q Consensus 88 ~tgk~i~tl~~h~~~VtsLafSPdg~~LaSgS~DGsI~IWDi~tg~~v~~l~~h~~~VtsLafSPdG~~LaSgs~DGsI~ 167 (1074)
+++...+.+|...|+++.+.|.+ .+++|+.|..|++|.- ++.+.++.+|.+.|+.+++.+++. |++++.||.|+
T Consensus 130 --~~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~-flScsNDg~Ir 203 (745)
T KOG0301|consen 130 --GELVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSH-FLSCSNDGSIR 203 (745)
T ss_pred --hhhhcccCCcchheeeeeecCCC-cEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCCC-eEeecCCceEE
Confidence 56667799999999999999988 7999999999999984 788999999999999999998764 88899999999
Q ss_pred EEECCCCceEEEeeecCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCCcEEEeeCCCCCCeEEEEEecCCCEEEEEECC
Q 001462 168 VWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGFDD 247 (1074)
Q Consensus 168 VWDl~tgk~v~~~~~h~g~ItsLafSPdg~lLaTGS~DGtI~IWDl~tg~~i~t~~~~~~~ItsIafSPDG~~LasGsd~ 247 (1074)
+|++ +|..+..+.+|...++++....++..+++++.|++++||+.. ++...+......|+++.+-++|..++.|+||
T Consensus 204 ~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgDIvvg~SDG 280 (745)
T KOG0301|consen 204 LWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGDIVVGGSDG 280 (745)
T ss_pred EEec-cCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecCccceEEEEEeeCCCEEEeccCc
Confidence 9998 899999999999999999988888899999999999999976 7777777777789999999999999999999
Q ss_pred cEEEEEecC
Q 001462 248 NLKVYSWEP 256 (1074)
Q Consensus 248 ~I~Vwd~~s 256 (1074)
.++||..+.
T Consensus 281 ~VrVfT~~k 289 (745)
T KOG0301|consen 281 RVRVFTVDK 289 (745)
T ss_pred eEEEEEecc
Confidence 999999874
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.6e-18 Score=201.82 Aligned_cols=354 Identities=15% Similarity=0.214 Sum_probs=263.5
Q ss_pred EEEecCC-CCEEEEEEecCCCcEEEEEECCCeEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEc
Q 001462 9 QEFVAHS-ANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDL 87 (1074)
Q Consensus 9 ~~L~gHs-~~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~k~l~sl~~hs~~ItsLafSpdg~~LatGs~DG~I~VWDl 87 (1074)
..+.||. +.|-+|+|++.+ .|++.+.+|.|.-||+.+++....+....+.|++++.+|.+..+++||.||.+..++.
T Consensus 62 ~vi~g~~drsIE~L~W~e~~--RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~ 139 (691)
T KOG2048|consen 62 PVIHGPEDRSIESLAWAEGG--RLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSI 139 (691)
T ss_pred EEEecCCCCceeeEEEccCC--eEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEec
Confidence 4556664 589999999665 6889999999999999999999999999999999999999999999999998888888
Q ss_pred CCCeeEE--EEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEe--------CCCCCeEEEEEcCCCCEE
Q 001462 88 EESKMVR--TLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYK--------GHTRGINTIRFTPDGRWV 157 (1074)
Q Consensus 88 ~tgk~i~--tl~~h~~~VtsLafSPdg~~LaSgS~DGsI~IWDi~tg~~v~~l~--------~h~~~VtsLafSPdG~~L 157 (1074)
..++... .+....+.|.++.|+|++..++.|+.||.|++||...+..++... ...--|+++.|..++ .|
T Consensus 140 ~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI 218 (691)
T KOG2048|consen 140 GPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TI 218 (691)
T ss_pred CCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cE
Confidence 7776543 334456889999999999999999999999999999998776322 122347888888666 59
Q ss_pred EEEECCCeEEEEECCCCceEEEeeecCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCCcE-------------------
Q 001462 158 VSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFEL------------------- 218 (1074)
Q Consensus 158 aSgs~DGsI~VWDl~tgk~v~~~~~h~g~ItsLafSPdg~lLaTGS~DGtI~IWDl~tg~~------------------- 218 (1074)
++|+..|.|.+||...|.++..+..|.+.|.+++..++++.+++++.|+.|..|...+...
T Consensus 219 ~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~a 298 (691)
T KOG2048|consen 219 ASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMA 298 (691)
T ss_pred EEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeee
Confidence 9999999999999999999999999999999999999999999999998877665432200
Q ss_pred ------------------------------------------------EE----------------------------ee
Q 001462 219 ------------------------------------------------IG----------------------------ST 222 (1074)
Q Consensus 219 ------------------------------------------------i~----------------------------t~ 222 (1074)
.. ..
T Consensus 299 v~~~~l~sgG~d~~l~i~~s~~~~~~~h~~~~~~p~~~~v~~a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~ 378 (691)
T KOG2048|consen 299 VIENALISGGRDFTLAICSSREFKNMDHRQKNLFPASDRVSVAPENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLF 378 (691)
T ss_pred eecceEEecceeeEEEEccccccCchhhhccccccccceeecCccceEEEEeccccccceeccCcccccccChhhheeee
Confidence 00 00
Q ss_pred CCCCCCeEEEEEecCCCEEEEEECCcEEEEEecCCeeeecccc------CCceeeEEEecCCCEEEEEE-CCCeEEEEEc
Q 001462 223 RPEVTGVHAITFHPDGRTLFSGFDDNLKVYSWEPVICHDSVDM------GWSTLGDLCINDGKLLGCSF-YRNSVGIWVA 295 (1074)
Q Consensus 223 ~~~~~~ItsIafSPDG~~LasGsd~~I~Vwd~~s~~~~~~l~~------~~s~~~~l~spDGklLAsgs-~DGsV~IWDl 295 (1074)
......|.+.+.+|+|++|+.+.-..++||.+........... ........++-|+..++..+ ....+.++++
T Consensus 379 ~k~~~nIs~~aiSPdg~~Ia~st~~~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~le~~el 458 (691)
T KOG2048|consen 379 TKEKENISCAAISPDGNLIAISTVSRTKIYRLQPDPNVKVINVDDVPLALLDASAISFTIDKNKLFLVSKNIFSLEEFEL 458 (691)
T ss_pred cCCccceeeeccCCCCCEEEEeeccceEEEEeccCcceeEEEeccchhhhccceeeEEEecCceEEEEecccceeEEEEe
Confidence 0011237788999999999999888889999876332222111 12334445566666555555 7788888888
Q ss_pred CCCceeeeecCCCCCCCCceeEEEEcCCCCcceeEEEEEeccCcceEEeecCCcccceEEEeecCCCCccceeeecCCC
Q 001462 296 DVSHVEPYGVGAPEPDQSICTEVKFNPPGSHSLEKVGIIGRSTSGFRSTSPDYETKDIKTIYVDSTGGKPVASQKIGPL 374 (1074)
Q Consensus 296 d~~~l~~~~~~~~~~~~~~ItsVaFSPDGs~~Lv~vlavG~stG~~r~ivpD~et~eI~~i~iDs~gGepv~~~~~sP~ 374 (1074)
+....+.+.-..+.+....|..+.-||||+. +.+.++..+ .++.+.++++....... -+-++.+..+.|+
T Consensus 459 ~~ps~kel~~~~~~~~~~~I~~l~~SsdG~y----iaa~~t~g~---I~v~nl~~~~~~~l~~r--ln~~vTa~~~~~~ 528 (691)
T KOG2048|consen 459 ETPSFKELKSIQSQAKCPSISRLVVSSDGNY----IAAISTRGQ---IFVYNLETLESHLLKVR--LNIDVTAAAFSPF 528 (691)
T ss_pred cCcchhhhhccccccCCCcceeEEEcCCCCE----EEEEeccce---EEEEEcccceeecchhc--cCcceeeeecccc
Confidence 7666655544444566789999999999994 444444444 55556556555554433 2244455555544
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.86 E-value=8e-20 Score=211.75 Aligned_cols=320 Identities=17% Similarity=0.165 Sum_probs=247.9
Q ss_pred EEEEEecCCCcEEEEEECCCeEEEEECCCCce---EEEeeCCCCCeEEEEEcCC-----------CCEEEEEEcCCeEEE
Q 001462 19 NCISIGKKACRFLITGGDDQKVNLWAIGKPTA---LMSLCGLSSPVDSVAFDSA-----------EVLVLAGASTGVIKL 84 (1074)
Q Consensus 19 t~IafSPdg~~lLaTGs~DGtV~IWDl~t~k~---l~sl~~hs~~ItsLafSpd-----------g~~LatGs~DG~I~V 84 (1074)
.++.|++.. ..|.+...|..++|||+.+... ...+..|...|+.+.--|- ...+++++.||+|++
T Consensus 328 IA~~Fdet~-~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRl 406 (1080)
T KOG1408|consen 328 IACQFDETT-DKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRL 406 (1080)
T ss_pred eEEEecCCC-ceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEE
Confidence 456788877 6788889999999999965433 3344568888888776551 125889999999999
Q ss_pred EEcCCCe---eEE----------------------------------EEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEE
Q 001462 85 WDLEESK---MVR----------------------------------TLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIW 127 (1074)
Q Consensus 85 WDl~tgk---~i~----------------------------------tl~~h~~~VtsLafSPdg~~LaSgS~DGsI~IW 127 (1074)
||+..+. ..+ ..-.....+.+++.+|+|++|++|..-|+|+||
T Consensus 407 W~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy 486 (1080)
T KOG1408|consen 407 WDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVY 486 (1080)
T ss_pred eecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEE
Confidence 9997521 100 001224568999999999999999999999999
Q ss_pred ECCCCeEEEEEeCCCCCeEEEEEcC---CCCEEEEEECCCeEEEEECCC-CceEEEeeecCCCeEEEEEcCCC--cEEEE
Q 001462 128 DIRKKGCIHTYKGHTRGINTIRFTP---DGRWVVSGGFDNVVKVWDLTA-GKLLHDFKFHEGHIRSIDFHPLE--FLLAT 201 (1074)
Q Consensus 128 Di~tg~~v~~l~~h~~~VtsLafSP---dG~~LaSgs~DGsI~VWDl~t-gk~v~~~~~h~g~ItsLafSPdg--~lLaT 201 (1074)
++..-.....+..|...|.|+.|+. ..++|++++.|..|+|||+.. ..++.++.+|...|+++.|.-.| ..+++
T Consensus 487 ~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~Mis 566 (1080)
T KOG1408|consen 487 DLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMIS 566 (1080)
T ss_pred EehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEe
Confidence 9999888888999999999999986 346899999999999999864 45678889999999999998877 77888
Q ss_pred EeCCCeEEEEECCCCcEEEee-----CCCCCCeEEEEEecCCCEEEEE-ECCcEEEEEecCCeeeeccccC----Cceee
Q 001462 202 GSADRTVKFWDLETFELIGST-----RPEVTGVHAITFHPDGRTLFSG-FDDNLKVYSWEPVICHDSVDMG----WSTLG 271 (1074)
Q Consensus 202 GS~DGtI~IWDl~tg~~i~t~-----~~~~~~ItsIafSPDG~~LasG-sd~~I~Vwd~~s~~~~~~l~~~----~s~~~ 271 (1074)
++.|..|.+--.........+ ......+..++..|..++++++ .|..|+||+++.++....+... ...+.
T Consensus 567 cGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIK 646 (1080)
T KOG1408|consen 567 CGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIK 646 (1080)
T ss_pred ccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEE
Confidence 999987755433321111111 1223568999999999998884 6788999999998887776433 45566
Q ss_pred EEEecCCCEEEEEECCCeEEEEEcCCCceeeeecCCCCCCCCceeEEEEcCCCCcceeEEEEEeccCcceEEeecC
Q 001462 272 DLCINDGKLLGCSFYRNSVGIWVADVSHVEPYGVGAPEPDQSICTEVKFNPPGSHSLEKVGIIGRSTSGFRSTSPD 347 (1074)
Q Consensus 272 ~l~spDGklLAsgs~DGsV~IWDld~~~l~~~~~~~~~~~~~~ItsVaFSPDGs~~Lv~vlavG~stG~~r~ivpD 347 (1074)
...-|.|-|||++..|.++.++|.-.++....+ .+|...|+.+.|.+|.++ ++.+....-.|-|-+|-
T Consensus 647 v~lDPSgiY~atScsdktl~~~Df~sgEcvA~m----~GHsE~VTG~kF~nDCkH----lISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 647 VILDPSGIYLATSCSDKTLCFVDFVSGECVAQM----TGHSEAVTGVKFLNDCKH----LISVSGDGCIFVWKLPL 714 (1080)
T ss_pred EEECCCccEEEEeecCCceEEEEeccchhhhhh----cCcchheeeeeecccchh----heeecCCceEEEEECch
Confidence 667799999999999999999999888877766 588999999999999998 44444455545566554
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.1e-20 Score=200.37 Aligned_cols=301 Identities=15% Similarity=0.213 Sum_probs=221.7
Q ss_pred EEEEEEecCCCcEEEEEECCCeEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeeEEEEe
Q 001462 18 VNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLT 97 (1074)
Q Consensus 18 Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~k~l~sl~~hs~~ItsLafSpdg~~LatGs~DG~I~VWDl~tgk~i~tl~ 97 (1074)
-.|+.|++.| .+||+|+.||.|.|||+.+......+.+|..+|.+++||++|+.|++++.|..|.+||+..|.+++.+.
T Consensus 26 a~~~~Fs~~G-~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir 104 (405)
T KOG1273|consen 26 AECCQFSRWG-DYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR 104 (405)
T ss_pred cceEEeccCc-ceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE
Confidence 6899999999 899999999999999999998888899999999999999999999999999999999999999998887
Q ss_pred CCCCCeEEEEEcCCCCE-EEEEECCCeEEEEECCCCeEEEEEeC------CCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Q 001462 98 GHKSNCTAVEFHPFGEF-FASGCMDTNLKIWDIRKKGCIHTYKG------HTRGINTIRFTPDGRWVVSGGFDNVVKVWD 170 (1074)
Q Consensus 98 ~h~~~VtsLafSPdg~~-LaSgS~DGsI~IWDi~tg~~v~~l~~------h~~~VtsLafSPdG~~LaSgs~DGsI~VWD 170 (1074)
...+|+.+.|+|.... +++.-.+..-.+.++..+. +.+-. ......+..|.+.|+|+++|...|.+.+||
T Consensus 105 -f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~--h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~ 181 (405)
T KOG1273|consen 105 -FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPK--HSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYD 181 (405)
T ss_pred -ccCccceeeeccccCCeEEEEEecCCcEEEEecCCc--eeeccCCCccccccccccccccCCCCEEEEecCcceEEEEe
Confidence 7899999999996543 3333334445555554322 22211 111233456889999999999999999999
Q ss_pred CCCCceEEEeeecC-CCeEEEEEcCCCcEEEEEeCCCeEEEEECCCCcEE---------EeeCC--CCCCeEEEEEecCC
Q 001462 171 LTAGKLLHDFKFHE-GHIRSIDFHPLEFLLATGSADRTVKFWDLETFELI---------GSTRP--EVTGVHAITFHPDG 238 (1074)
Q Consensus 171 l~tgk~v~~~~~h~-g~ItsLafSPdg~lLaTGS~DGtI~IWDl~tg~~i---------~t~~~--~~~~ItsIafSPDG 238 (1074)
..+.+++..++... ..|..+-|+..|.+|++-+.|+.|+.|++..-... .+++. ....-.+++|+.+|
T Consensus 182 a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dg 261 (405)
T KOG1273|consen 182 AETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDG 261 (405)
T ss_pred cchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCc
Confidence 99999999888655 77999999999999999999999999998731111 11111 11223578999999
Q ss_pred CEEEEEECC--cEEEEEecCCeeeeccccCC-ceee-EEEecCCCEEEEEECCCeEEEEEcCCCceeeeecCCCCCCCCc
Q 001462 239 RTLFSGFDD--NLKVYSWEPVICHDSVDMGW-STLG-DLCINDGKLLGCSFYRNSVGIWVADVSHVEPYGVGAPEPDQSI 314 (1074)
Q Consensus 239 ~~LasGsd~--~I~Vwd~~s~~~~~~l~~~~-s~~~-~l~spDGklLAsgs~DGsV~IWDld~~~l~~~~~~~~~~~~~~ 314 (1074)
.|+++|+.. .++||.-..+..++.+.... ..+. ..|.+-...+++- ..|.|+||... .+..|
T Consensus 262 eYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~~~--~~enw----------- 327 (405)
T KOG1273|consen 262 EYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI-ASGVVYIWAVV--QVENW----------- 327 (405)
T ss_pred cEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeec-cCCceEEEEee--cccch-----------
Confidence 999998644 48888877777777665433 2222 2233333344444 78999999653 11112
Q ss_pred eeEEEEcCCCCcceeEEEEEeccCc
Q 001462 315 CTEVKFNPPGSHSLEKVGIIGRSTS 339 (1074)
Q Consensus 315 ItsVaFSPDGs~~Lv~vlavG~stG 339 (1074)
-+|.||-..+-..+...-...+
T Consensus 328 ---safAPdFqeleeNieY~EkEde 349 (405)
T KOG1273|consen 328 ---SAFAPDFQELEENIEYEEKEDE 349 (405)
T ss_pred ---hhcCchHHHHHhhhhhcccccc
Confidence 2677777665555555555544
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.5e-20 Score=214.70 Aligned_cols=291 Identities=19% Similarity=0.270 Sum_probs=234.2
Q ss_pred eEEEEecCCCCEEEEEEecCC----------CcEEEEEECCCeEEEEECCCCceEE------------------------
Q 001462 7 KLQEFVAHSANVNCISIGKKA----------CRFLITGGDDQKVNLWAIGKPTALM------------------------ 52 (1074)
Q Consensus 7 ~v~~L~gHs~~Vt~IafSPdg----------~~lLaTGs~DGtV~IWDl~t~k~l~------------------------ 52 (1074)
+...+..|...|+.+.--|-+ ...+++|+.||+|++|++..+..-.
T Consensus 361 k~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~ 440 (1080)
T KOG1408|consen 361 KCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIM 440 (1080)
T ss_pred ceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhh
Confidence 456677899999998766611 1258999999999999985421100
Q ss_pred -------------EeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeeEEEEeCCCCCeEEEEEcC---CCCEEE
Q 001462 53 -------------SLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHP---FGEFFA 116 (1074)
Q Consensus 53 -------------sl~~hs~~ItsLafSpdg~~LatGs~DG~I~VWDl~tgk~i~tl~~h~~~VtsLafSP---dg~~La 116 (1074)
...+...++.+++.+|+|++|++|..-|.|+||++..-+....+..|...|.|+.|+- ..++|+
T Consensus 441 ~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLA 520 (1080)
T KOG1408|consen 441 HDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLA 520 (1080)
T ss_pred hhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhh
Confidence 0112235699999999999999999999999999999998899999999999999985 246899
Q ss_pred EEECCCeEEEEECCC-CeEEEEEeCCCCCeEEEEEcCCC--CEEEEEECCCeEEEEECCCCceEEEee-----ecCCCeE
Q 001462 117 SGCMDTNLKIWDIRK-KGCIHTYKGHTRGINTIRFTPDG--RWVVSGGFDNVVKVWDLTAGKLLHDFK-----FHEGHIR 188 (1074)
Q Consensus 117 SgS~DGsI~IWDi~t-g~~v~~l~~h~~~VtsLafSPdG--~~LaSgs~DGsI~VWDl~tgk~v~~~~-----~h~g~It 188 (1074)
+++.|..|+|||... ...++++.+|...|+++.|--.| ..+++++.|..|.+--.+.......|. .....++
T Consensus 521 SasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlY 600 (1080)
T KOG1408|consen 521 SASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLY 600 (1080)
T ss_pred hccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEE
Confidence 999999999999854 45678889999999999998877 678999999877643322111111121 2245689
Q ss_pred EEEEcCCCcEEEEEeCCCeEEEEECCCCcEEEeeCC---CCCCeEEEEEecCCCEEEE-EECCcEEEEEecCCeeeeccc
Q 001462 189 SIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRP---EVTGVHAITFHPDGRTLFS-GFDDNLKVYSWEPVICHDSVD 264 (1074)
Q Consensus 189 sLafSPdg~lLaTGS~DGtI~IWDl~tg~~i~t~~~---~~~~ItsIafSPDG~~Las-Gsd~~I~Vwd~~s~~~~~~l~ 264 (1074)
.++..|..+++++++.|..|+|||+.+++..+.|++ |.+....+...|.|.||++ ++|.++.+||+-.+.|.....
T Consensus 601 Dm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~ 680 (1080)
T KOG1408|consen 601 DMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMT 680 (1080)
T ss_pred EeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhc
Confidence 999999999999999999999999999999998875 4566888999999999998 578889999999999988776
Q ss_pred cCCce-eeEEEecCCCEEEEEECCCeEEEEEcCC
Q 001462 265 MGWST-LGDLCINDGKLLGCSFYRNSVGIWVADV 297 (1074)
Q Consensus 265 ~~~s~-~~~l~spDGklLAsgs~DGsV~IWDld~ 297 (1074)
.+... .++.|.+|-+.|++.+.||.|.||.+..
T Consensus 681 GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 681 GHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred CcchheeeeeecccchhheeecCCceEEEEECch
Confidence 65544 5566778999999999999999999743
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.6e-19 Score=194.29 Aligned_cols=261 Identities=18% Similarity=0.312 Sum_probs=203.5
Q ss_pred CCCCCeEEEEEcC-CCCEEEEEEcCCeEEEEEcCC-CeeE-EEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC
Q 001462 56 GLSSPVDSVAFDS-AEVLVLAGASTGVIKLWDLEE-SKMV-RTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKK 132 (1074)
Q Consensus 56 ~hs~~ItsLafSp-dg~~LatGs~DG~I~VWDl~t-gk~i-~tl~~h~~~VtsLafSPdg~~LaSgS~DGsI~IWDi~tg 132 (1074)
.....|.+++||| ...++++|+.||+|++|+++. |..+ +....|.++|.+++|+.+|..+++|+.|+.+++||+.++
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~ 104 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG 104 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC
Confidence 3467899999999 556777899999999999986 3332 344568999999999999999999999999999999999
Q ss_pred eEEEEEeCCCCCeEEEEEcCCCC--EEEEEECCCeEEEEECCCCceEEEeeecCCCeEEEEEcCCCcEEEEEeCCCeEEE
Q 001462 133 GCIHTYKGHTRGINTIRFTPDGR--WVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKF 210 (1074)
Q Consensus 133 ~~v~~l~~h~~~VtsLafSPdG~--~LaSgs~DGsI~VWDl~tgk~v~~~~~h~g~ItsLafSPdg~lLaTGS~DGtI~I 210 (1074)
+ +..+..|..+|.++.|-+... .|++|+.|.+|++||++...++..+.. ...++++..- ..+++++..++.|.+
T Consensus 105 Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~L-PeRvYa~Dv~--~pm~vVata~r~i~v 180 (347)
T KOG0647|consen 105 Q-VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQL-PERVYAADVL--YPMAVVATAERHIAV 180 (347)
T ss_pred C-eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeec-cceeeehhcc--CceeEEEecCCcEEE
Confidence 5 556667999999999988665 899999999999999999999988874 4556666543 567888889999999
Q ss_pred EECCCCcEEEe--eCCCCCCeEEEEEecCCCEEEEE-ECCcEEEEEecCC--------eeeeccc----cCCceeeEEEe
Q 001462 211 WDLETFELIGS--TRPEVTGVHAITFHPDGRTLFSG-FDDNLKVYSWEPV--------ICHDSVD----MGWSTLGDLCI 275 (1074)
Q Consensus 211 WDl~tg~~i~t--~~~~~~~ItsIafSPDG~~LasG-sd~~I~Vwd~~s~--------~~~~~l~----~~~s~~~~l~s 275 (1074)
|++..+..... ..+....+++++...|....+.| -+|.+.|..++.. +||.... .-+.+....|.
T Consensus 181 ynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~Fh 260 (347)
T KOG0647|consen 181 YNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFH 260 (347)
T ss_pred EEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEee
Confidence 99976543222 12234568999988887666665 5677888877753 3444311 12344566677
Q ss_pred cCCCEEEEEECCCeEEEEEcCCCc-eeeeecCCCCCCCCceeEEEEcCCCC
Q 001462 276 NDGKLLGCSFYRNSVGIWVADVSH-VEPYGVGAPEPDQSICTEVKFNPPGS 325 (1074)
Q Consensus 276 pDGklLAsgs~DGsV~IWDld~~~-l~~~~~~~~~~~~~~ItsVaFSPDGs 325 (1074)
|.-..|++++.||.+.+||.+... ++.+ +.+..+|++.+|+-+|+
T Consensus 261 P~hgtlvTaGsDGtf~FWDkdar~kLk~s-----~~~~qpItcc~fn~~G~ 306 (347)
T KOG0647|consen 261 PVHGTLVTAGSDGTFSFWDKDARTKLKTS-----ETHPQPITCCSFNRNGS 306 (347)
T ss_pred cccceEEEecCCceEEEecchhhhhhhcc-----CcCCCccceeEecCCCC
Confidence 888899999999999999986432 2222 57789999999999999
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.4e-20 Score=197.65 Aligned_cols=243 Identities=21% Similarity=0.369 Sum_probs=200.2
Q ss_pred ecCCCCEEEEEEecCCCcEEEEEECCCeEEEEECCCC---ceEEEeeCCCCCeEEEEEcC--CCCEEEEEEcCCeEEEEE
Q 001462 12 VAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKP---TALMSLCGLSSPVDSVAFDS--AEVLVLAGASTGVIKLWD 86 (1074)
Q Consensus 12 ~gHs~~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~---k~l~sl~~hs~~ItsLafSp--dg~~LatGs~DG~I~VWD 86 (1074)
..|.+.|..+...-.| ..||||+.|++|+||..... +.+..|.+|.++|+.++|.. -|.+|+++++||.|.||.
T Consensus 8 t~H~D~IHda~lDyyg-krlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWk 86 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDYYG-KRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWK 86 (299)
T ss_pred hhhhhhhhHhhhhhhc-ceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEe
Confidence 5799999999888888 78999999999999998543 56788999999999999975 899999999999999999
Q ss_pred cCCCe--eEEEEeCCCCCeEEEEEcCC--CCEEEEEECCCeEEEEECCCCe---EEEEEeCCCCCeEEEEEcCC---C--
Q 001462 87 LEESK--MVRTLTGHKSNCTAVEFHPF--GEFFASGCMDTNLKIWDIRKKG---CIHTYKGHTRGINTIRFTPD---G-- 154 (1074)
Q Consensus 87 l~tgk--~i~tl~~h~~~VtsLafSPd--g~~LaSgS~DGsI~IWDi~tg~---~v~~l~~h~~~VtsLafSPd---G-- 154 (1074)
-+.|+ .......|...|++++|.|. |-.|++++.||.|.|++++... .......|.-.|.+++|.|- |
T Consensus 87 e~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~ 166 (299)
T KOG1332|consen 87 EENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSL 166 (299)
T ss_pred cCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccc
Confidence 88774 34455679999999999885 4589999999999999987641 23445678899999999985 4
Q ss_pred ---------CEEEEEECCCeEEEEECCCCc--eEEEeeecCCCeEEEEEcCCC----cEEEEEeCCCeEEEEECCCC-cE
Q 001462 155 ---------RWVVSGGFDNVVKVWDLTAGK--LLHDFKFHEGHIRSIDFHPLE----FLLATGSADRTVKFWDLETF-EL 218 (1074)
Q Consensus 155 ---------~~LaSgs~DGsI~VWDl~tgk--~v~~~~~h~g~ItsLafSPdg----~lLaTGS~DGtI~IWDl~tg-~~ 218 (1074)
+.|++|+.|..|+||+...+. ....+.+|.+.|+.++|.|.- .+|++++.||++.||....- +.
T Consensus 167 ~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~ 246 (299)
T KOG1332|consen 167 VDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEP 246 (299)
T ss_pred cccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCc
Confidence 569999999999999988763 445588999999999999963 68999999999999987621 11
Q ss_pred --EEeeCCCCCCeEEEEEecCCCEEEEE-ECCcEEEEEec
Q 001462 219 --IGSTRPEVTGVHAITFHPDGRTLFSG-FDDNLKVYSWE 255 (1074)
Q Consensus 219 --i~t~~~~~~~ItsIafSPDG~~LasG-sd~~I~Vwd~~ 255 (1074)
...+......+..+.|+..|.+|+++ .++.+.+|.-+
T Consensus 247 wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 247 WKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred ccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence 12233455678999999999999985 66778888654
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.4e-19 Score=183.98 Aligned_cols=245 Identities=21% Similarity=0.393 Sum_probs=203.3
Q ss_pred EEEecCCCCEEEEEEecCCCcEEEEEECCCeEEEEECCCCce-----EEEeeCCCCCeEEEEEcC----CCCEEEEEE-c
Q 001462 9 QEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTA-----LMSLCGLSSPVDSVAFDS----AEVLVLAGA-S 78 (1074)
Q Consensus 9 ~~L~gHs~~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~k~-----l~sl~~hs~~ItsLafSp----dg~~LatGs-~ 78 (1074)
+.-+.|.+.|+|.+|+|.| .+|++|+.|.+|++.-++.... -..+.-|.+.|..++|-. .+..|++++ .
T Consensus 83 kr~khhkgsiyc~~ws~~g-eliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gag 161 (350)
T KOG0641|consen 83 KRNKHHKGSIYCTAWSPCG-ELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAG 161 (350)
T ss_pred eeccccCccEEEEEecCcc-CeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCC
Confidence 4456799999999999999 8999999999999987643222 235667899999999964 345676654 3
Q ss_pred CCeEEEEEcCCCeeEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeC--C-----CCCeEEEEEc
Q 001462 79 TGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKG--H-----TRGINTIRFT 151 (1074)
Q Consensus 79 DG~I~VWDl~tgk~i~tl~~h~~~VtsLafSPdg~~LaSgS~DGsI~IWDi~tg~~v~~l~~--h-----~~~VtsLafS 151 (1074)
|..|++-|...|+..+-+.+|.+.|.++- +-+|-.|++|+.|.+|++||++-..++..+.. | ...|.+++..
T Consensus 162 dc~iy~tdc~~g~~~~a~sghtghilaly-swn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vd 240 (350)
T KOG0641|consen 162 DCKIYITDCGRGQGFHALSGHTGHILALY-SWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVD 240 (350)
T ss_pred cceEEEeecCCCCcceeecCCcccEEEEE-EecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEEC
Confidence 67888889999999999999999998762 33488999999999999999998888777642 2 2468999999
Q ss_pred CCCCEEEEEECCCeEEEEECCCCceEEEeeecCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCC----cEEEeeCCCCC
Q 001462 152 PDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETF----ELIGSTRPEVT 227 (1074)
Q Consensus 152 PdG~~LaSgs~DGsI~VWDl~tgk~v~~~~~h~g~ItsLafSPdg~lLaTGS~DGtI~IWDl~tg----~~i~t~~~~~~ 227 (1074)
|.|++|++|-.|....+||++.+..++.|..|...|.|+.|+|...+|++++.|..|++-|+... -.+.....|..
T Consensus 241 psgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkd 320 (350)
T KOG0641|consen 241 PSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKD 320 (350)
T ss_pred CCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccC
Confidence 99999999999999999999999999999999999999999999999999999999999998731 12344456777
Q ss_pred CeEEEEEecCCCEEEE-EECCcEEEEEec
Q 001462 228 GVHAITFHPDGRTLFS-GFDDNLKVYSWE 255 (1074)
Q Consensus 228 ~ItsIafSPDG~~Las-Gsd~~I~Vwd~~ 255 (1074)
.+..+.|+|..-.+++ ..|.+..+|-+.
T Consensus 321 k~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 321 KAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred ceEEEEecCccceeeeccCcceEEEeccC
Confidence 8889999998766665 567778899764
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.7e-18 Score=198.87 Aligned_cols=242 Identities=21% Similarity=0.363 Sum_probs=199.9
Q ss_pred cCCCCEEEEEEecCCCcEEEEEECCCeEEEEECCCC-ceEEEeeCC-CCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCC
Q 001462 13 AHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKP-TALMSLCGL-SSPVDSVAFDSAEVLVLAGASTGVIKLWDLEES 90 (1074)
Q Consensus 13 gHs~~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~-k~l~sl~~h-s~~ItsLafSpdg~~LatGs~DG~I~VWDl~tg 90 (1074)
---..|.|++|+.+. +.||.+-.||.|.||++... -....+.++ ...|.+++|++.+ .|++.+.+|.|.-||+.++
T Consensus 23 ~~Ps~I~slA~s~kS-~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~-RLFS~g~sg~i~EwDl~~l 100 (691)
T KOG2048|consen 23 YKPSEIVSLAYSHKS-NQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGG-RLFSSGLSGSITEWDLHTL 100 (691)
T ss_pred eeccceEEEEEeccC-CceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccCC-eEEeecCCceEEEEecccC
Confidence 345789999999998 67999999999999999654 333344444 5689999999544 5677778999999999999
Q ss_pred eeEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEE--EeCCCCCeEEEEEcCCCCEEEEEECCCeEEE
Q 001462 91 KMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHT--YKGHTRGINTIRFTPDGRWVVSGGFDNVVKV 168 (1074)
Q Consensus 91 k~i~tl~~h~~~VtsLafSPdg~~LaSgS~DGsI~IWDi~tg~~v~~--l~~h~~~VtsLafSPdG~~LaSgs~DGsI~V 168 (1074)
+....+....+.|++++.+|.+..+++||.||.++++++..+..... +....+.|.++.|+|++..++.|+.||.|++
T Consensus 101 k~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iri 180 (691)
T KOG2048|consen 101 KQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRI 180 (691)
T ss_pred ceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEE
Confidence 99999999999999999999999999999999888888877765433 3345578999999999999999999999999
Q ss_pred EECCCCceEEEee-----e---cCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCCcEEEeeCCCCCCeEEEEEecCCCE
Q 001462 169 WDLTAGKLLHDFK-----F---HEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRT 240 (1074)
Q Consensus 169 WDl~tgk~v~~~~-----~---h~g~ItsLafSPdg~lLaTGS~DGtI~IWDl~tg~~i~t~~~~~~~ItsIafSPDG~~ 240 (1074)
||...+..++... . ...-|+++.|-.+ ..|++|..-|+|.+||...+.++..+..|...|.+++..+++.+
T Consensus 181 wd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~ 259 (691)
T KOG2048|consen 181 WDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD-STIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDR 259 (691)
T ss_pred EEcCCCceEEEeeecccccccCCceEEEEEEEeec-CcEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCe
Confidence 9999998776222 1 1223677777744 57889999999999999999999999999999999999999777
Q ss_pred EEE-EECCcEEEEEecCC
Q 001462 241 LFS-GFDDNLKVYSWEPV 257 (1074)
Q Consensus 241 Las-Gsd~~I~Vwd~~s~ 257 (1074)
+++ |.|+.+..|...+.
T Consensus 260 vfsaGvd~~ii~~~~~~~ 277 (691)
T KOG2048|consen 260 VFSAGVDPKIIQYSLTTN 277 (691)
T ss_pred EEEccCCCceEEEEecCC
Confidence 776 67777777766544
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.3e-19 Score=193.85 Aligned_cols=265 Identities=18% Similarity=0.214 Sum_probs=210.4
Q ss_pred CCCCEEEEEEecCCCcEEEEEECCCeEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeeE
Q 001462 14 HSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMV 93 (1074)
Q Consensus 14 Hs~~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~k~l~sl~~hs~~ItsLafSpdg~~LatGs~DG~I~VWDl~tgk~i 93 (1074)
-.+.|..+.|+|.+ ..|++++.||.+++||+........+ .|..++.+++|.+ ...+++|+.||.|+.+|+.++...
T Consensus 12 P~d~IS~v~f~~~~-~~LLvssWDgslrlYdv~~~~l~~~~-~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~~ 88 (323)
T KOG1036|consen 12 PEDGISSVKFSPSS-SDLLVSSWDGSLRLYDVPANSLKLKF-KHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNED 88 (323)
T ss_pred ChhceeeEEEcCcC-CcEEEEeccCcEEEEeccchhhhhhe-ecCCceeeeeccC-CceEEEeccCceEEEEEecCCcce
Confidence 36789999999887 66777789999999999877554444 4899999999986 567899999999999999888754
Q ss_pred EEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC
Q 001462 94 RTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTA 173 (1074)
Q Consensus 94 ~tl~~h~~~VtsLafSPdg~~LaSgS~DGsI~IWDi~tg~~v~~l~~h~~~VtsLafSPdG~~LaSgs~DGsI~VWDl~t 173 (1074)
.. ..|...|.||.+++....+++|++|+.|++||.+.......+.. ...|.++... |+.|++|+.+..+.+||+++
T Consensus 89 ~i-gth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~-~kkVy~~~v~--g~~LvVg~~~r~v~iyDLRn 164 (323)
T KOG1036|consen 89 QI-GTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQ-GKKVYCMDVS--GNRLVVGTSDRKVLIYDLRN 164 (323)
T ss_pred ee-ccCCCceEEEEeeccCCeEEEcccCccEEEEecccccccccccc-CceEEEEecc--CCEEEEeecCceEEEEEccc
Confidence 44 45999999999999888999999999999999987666655553 3478888775 67899999999999999998
Q ss_pred CceEEEee--ecCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCC----cEEEeeCCCC---------CCeEEEEEecCC
Q 001462 174 GKLLHDFK--FHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETF----ELIGSTRPEV---------TGVHAITFHPDG 238 (1074)
Q Consensus 174 gk~v~~~~--~h~g~ItsLafSPdg~lLaTGS~DGtI~IWDl~tg----~~i~t~~~~~---------~~ItsIafSPDG 238 (1074)
.....+.. ..+..+.|+++.|++.-+++++-||.|.+=.++.. .....|..|. .+|.+|+|+|--
T Consensus 165 ~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~ 244 (323)
T KOG1036|consen 165 LDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIH 244 (323)
T ss_pred ccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEecccc
Confidence 76544322 23456899999998888899999999887666544 2222333332 368999999998
Q ss_pred CEEEEE-ECCcEEEEEecCCeeeecccc-CCceeeEEEecCCCEEEEEE
Q 001462 239 RTLFSG-FDDNLKVYSWEPVICHDSVDM-GWSTLGDLCINDGKLLGCSF 285 (1074)
Q Consensus 239 ~~LasG-sd~~I~Vwd~~s~~~~~~l~~-~~s~~~~l~spDGklLAsgs 285 (1074)
..|++| +||.+.+||..+.+-...+.. ..++....|..||..||.++
T Consensus 245 ~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~ 293 (323)
T KOG1036|consen 245 GTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIAS 293 (323)
T ss_pred ceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEe
Confidence 888885 777899999988776655543 35577778889999999986
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.5e-20 Score=221.88 Aligned_cols=208 Identities=23% Similarity=0.381 Sum_probs=178.1
Q ss_pred CceEEEEecCCCCEEEEEEecCCCcEEEEEECCCeEEEEECCCCceEEEeeCCCCCeEEEEEcC-CCCEEEEEEcCCeEE
Q 001462 5 GYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDS-AEVLVLAGASTGVIK 83 (1074)
Q Consensus 5 G~~v~~L~gHs~~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~k~l~sl~~hs~~ItsLafSp-dg~~LatGs~DG~I~ 83 (1074)
.+++..|.||.+.|..|.||.++ +|++++.|.+|+||++...+++..+. |...|+|++|+| |.+|+++|+-||.|+
T Consensus 359 ekP~~ef~GHt~DILDlSWSKn~--fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvDDryFiSGSLD~KvR 435 (712)
T KOG0283|consen 359 EKPFCEFKGHTADILDLSWSKNN--FLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVDDRYFISGSLDGKVR 435 (712)
T ss_pred ccchhhhhccchhheecccccCC--eeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccCCCcEeecccccceE
Confidence 35678899999999999999986 89999999999999999999998887 999999999999 789999999999999
Q ss_pred EEEcCCCeeEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeC--------CCCCeEEEEEcCC-C
Q 001462 84 LWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKG--------HTRGINTIRFTPD-G 154 (1074)
Q Consensus 84 VWDl~tgk~i~tl~~h~~~VtsLafSPdg~~LaSgS~DGsI~IWDi~tg~~v~~l~~--------h~~~VtsLafSPd-G 154 (1074)
||++.+.+.+.... ..+-|++++|.|+|++.++|+.+|.+++|+....+....+.- ....|+.+.|.|. .
T Consensus 436 iWsI~d~~Vv~W~D-l~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~ 514 (712)
T KOG0283|consen 436 LWSISDKKVVDWND-LRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDP 514 (712)
T ss_pred EeecCcCeeEeehh-hhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCC
Confidence 99998877665544 458899999999999999999999999999987776544421 1236999999983 3
Q ss_pred CEEEEEECCCeEEEEECCCCceEEEeeecCC--CeEEEEEcCCCcEEEEEeCCCeEEEEECCCC
Q 001462 155 RWVVSGGFDNVVKVWDLTAGKLLHDFKFHEG--HIRSIDFHPLEFLLATGSADRTVKFWDLETF 216 (1074)
Q Consensus 155 ~~LaSgs~DGsI~VWDl~tgk~v~~~~~h~g--~ItsLafSPdg~lLaTGS~DGtI~IWDl~tg 216 (1074)
..+++.+.|..|+|||.++..++..|+++.. .-....|+.||++|++++.|..|++|+....
T Consensus 515 ~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~~ 578 (712)
T KOG0283|consen 515 DEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDSF 578 (712)
T ss_pred CeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCCC
Confidence 4577778899999999999899888886542 2356678999999999999999999998543
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.1e-20 Score=206.56 Aligned_cols=229 Identities=18% Similarity=0.280 Sum_probs=201.1
Q ss_pred cCCCCEEEEEEecCCCcEEEEEECCCeEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcC----
Q 001462 13 AHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLE---- 88 (1074)
Q Consensus 13 gHs~~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~k~l~sl~~hs~~ItsLafSpdg~~LatGs~DG~I~VWDl~---- 88 (1074)
.-.+.|.|++-+|.| .||+.|+..|.|++|.+.+|..+..+..|-..|+|+.|+.||.+|++|+.||.|.+|++-
T Consensus 79 v~Pg~v~al~s~n~G-~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~ 157 (476)
T KOG0646|consen 79 VLPGPVHALASSNLG-YFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVS 157 (476)
T ss_pred ccccceeeeecCCCc-eEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecc
Confidence 345789999999999 788888899999999999999999999999999999999999999999999999999873
Q ss_pred -----CCeeEEEEeCCCCCeEEEEEcCC--CCEEEEEECCCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEE
Q 001462 89 -----ESKMVRTLTGHKSNCTAVEFHPF--GEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGG 161 (1074)
Q Consensus 89 -----tgk~i~tl~~h~~~VtsLafSPd--g~~LaSgS~DGsI~IWDi~tg~~v~~l~~h~~~VtsLafSPdG~~LaSgs 161 (1074)
+-++.+.+..|.-+|+++...+. ..++++++.|.++++||+..+..+..+. ....+.+++.+|-+..+++|+
T Consensus 158 a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~-fp~si~av~lDpae~~~yiGt 236 (476)
T KOG0646|consen 158 ADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT-FPSSIKAVALDPAERVVYIGT 236 (476)
T ss_pred cccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe-cCCcceeEEEcccccEEEecC
Confidence 23577889999999999988765 3589999999999999999999888887 566799999999999999999
Q ss_pred CCCeEEEEECCCC----------------ceEEEeeecCC--CeEEEEEcCCCcEEEEEeCCCeEEEEECCCCcEEEeeC
Q 001462 162 FDNVVKVWDLTAG----------------KLLHDFKFHEG--HIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTR 223 (1074)
Q Consensus 162 ~DGsI~VWDl~tg----------------k~v~~~~~h~g--~ItsLafSPdg~lLaTGS~DGtI~IWDl~tg~~i~t~~ 223 (1074)
.+|.|.+.++... ..+..+.+|.+ .|+|++++-||.+|++|+.||.++|||+.+.+++.++.
T Consensus 237 ~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~ 316 (476)
T KOG0646|consen 237 EEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQ 316 (476)
T ss_pred CcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHh
Confidence 9999999887432 23455678888 99999999999999999999999999999999999888
Q ss_pred CCCCCeEEEEEecCCCEEEE
Q 001462 224 PEVTGVHAITFHPDGRTLFS 243 (1074)
Q Consensus 224 ~~~~~ItsIafSPDG~~Las 243 (1074)
...++|+.+.+.|-.+..+.
T Consensus 317 ~~kgpVtnL~i~~~~~~~~l 336 (476)
T KOG0646|consen 317 TSKGPVTNLQINPLERGIIL 336 (476)
T ss_pred hhccccceeEeeccccceec
Confidence 77889999998775444443
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.3e-19 Score=206.67 Aligned_cols=334 Identities=17% Similarity=0.241 Sum_probs=250.0
Q ss_pred EecCCCCEEEEEEecCCCcEEEEEECCCeEEEEECCCC--ceEE-----EeeCCCCCeEEEEEcCCCCEEEEEEcCCeEE
Q 001462 11 FVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKP--TALM-----SLCGLSSPVDSVAFDSAEVLVLAGASTGVIK 83 (1074)
Q Consensus 11 L~gHs~~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~--k~l~-----sl~~hs~~ItsLafSpdg~~LatGs~DG~I~ 83 (1074)
+.||.+.|+++.|+|.+ ..|++++.|.++.+|.-.+. --.. ...+...+.+...|+++++.+++-+..|-.+
T Consensus 263 l~GHeDWV~sv~W~p~~-~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~h 341 (764)
T KOG1063|consen 263 LMGHEDWVYSVWWHPEG-LDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFH 341 (764)
T ss_pred hcCcccceEEEEEccch-hhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEE
Confidence 35999999999999998 78999999999999986443 2211 2234456789999999999999999999999
Q ss_pred EEEcCCC---eeEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC-CCe---EEEEEeCCCCCeEEEEEcCCCCE
Q 001462 84 LWDLEES---KMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIR-KKG---CIHTYKGHTRGINTIRFTPDGRW 156 (1074)
Q Consensus 84 VWDl~tg---k~i~tl~~h~~~VtsLafSPdg~~LaSgS~DGsI~IWDi~-tg~---~v~~l~~h~~~VtsLafSPdG~~ 156 (1074)
+|...+. .....+.+|.+.|.+++|+|.|.||++++.|.+-++|--- ... .+..-+.|...+.|++|-+....
T Consensus 342 lWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~ 421 (764)
T KOG1063|consen 342 LWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQ 421 (764)
T ss_pred EEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCce
Confidence 9983332 2334457899999999999999999999999999998754 111 22223457888999999986567
Q ss_pred EEEEECCCeEEEEECCC-------------------------------------------Cce-----------------
Q 001462 157 VVSGGFDNVVKVWDLTA-------------------------------------------GKL----------------- 176 (1074)
Q Consensus 157 LaSgs~DGsI~VWDl~t-------------------------------------------gk~----------------- 176 (1074)
|++|.....+++|+... |..
T Consensus 422 FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ 501 (764)
T KOG1063|consen 422 FVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELT 501 (764)
T ss_pred eeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhcc
Confidence 88888888999986420 000
Q ss_pred ----------------EEEeeecCCCeEEEEEcCCCcEEEEEeCC-----CeEEEEECCCCcEEEeeCCCCCCeEEEEEe
Q 001462 177 ----------------LHDFKFHEGHIRSIDFHPLEFLLATGSAD-----RTVKFWDLETFELIGSTRPEVTGVHAITFH 235 (1074)
Q Consensus 177 ----------------v~~~~~h~g~ItsLafSPdg~lLaTGS~D-----GtI~IWDl~tg~~i~t~~~~~~~ItsIafS 235 (1074)
++.+-+|...|++++.+|+++++|+++.. ..|++|+..+...+..+..|.-.|+.++|+
T Consensus 502 ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FS 581 (764)
T KOG1063|consen 502 EPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFS 581 (764)
T ss_pred CCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEEC
Confidence 11122588889999999999999999754 359999999999999999999999999999
Q ss_pred cCCCEEEEE-ECCcEEEEEecCCee----eeccc-cCCceeeEEEecCCCEEEEEECCCeEEEEEcCCCceeeeecCCCC
Q 001462 236 PDGRTLFSG-FDDNLKVYSWEPVIC----HDSVD-MGWSTLGDLCINDGKLLGCSFYRNSVGIWVADVSHVEPYGVGAPE 309 (1074)
Q Consensus 236 PDG~~LasG-sd~~I~Vwd~~s~~~----~~~l~-~~~s~~~~l~spDGklLAsgs~DGsV~IWDld~~~l~~~~~~~~~ 309 (1074)
|||+||++. .|....+|....... ..... +..-+..+-|+||+++|++++.|..|.||................
T Consensus 582 pdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~ 661 (764)
T KOG1063|consen 582 PDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACL 661 (764)
T ss_pred CCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchh
Confidence 999999985 577789998743221 11122 223345556779999999999999999998765532222211225
Q ss_pred CCCCceeEEEEcCCCCcceeEEEEEeccCcceEEee
Q 001462 310 PDQSICTEVKFNPPGSHSLEKVGIIGRSTSGFRSTS 345 (1074)
Q Consensus 310 ~~~~~ItsVaFSPDGs~~Lv~vlavG~stG~~r~iv 345 (1074)
.+...++.++|.|--..--..++++|...|.+-.+-
T Consensus 662 ~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~ 697 (764)
T KOG1063|consen 662 KFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWR 697 (764)
T ss_pred ccCCceeeEEeeccccccccceEEEEecccEEEEEe
Confidence 678899999999854433334777888887544443
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=9.8e-17 Score=175.61 Aligned_cols=313 Identities=28% Similarity=0.491 Sum_probs=240.6
Q ss_pred eEEEEecCCC-CEEEEEE-ecCCCcEEEEEEC-CCeEEEEECCC-CceEEEeeCCCCCeEEEEEcCCCCEEEEEEc-CCe
Q 001462 7 KLQEFVAHSA-NVNCISI-GKKACRFLITGGD-DQKVNLWAIGK-PTALMSLCGLSSPVDSVAFDSAEVLVLAGAS-TGV 81 (1074)
Q Consensus 7 ~v~~L~gHs~-~Vt~Iaf-SPdg~~lLaTGs~-DGtV~IWDl~t-~k~l~sl~~hs~~ItsLafSpdg~~LatGs~-DG~ 81 (1074)
.+..+.++.. .+..+.+ ++++..+++..+. |+.+.+|+... ......+..|...|..++|++++.+++.++. ++.
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 179 (466)
T COG2319 100 LIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGT 179 (466)
T ss_pred eEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCc
Confidence 4566666443 7888887 7777434555444 99999999987 7888889999999999999999998888885 999
Q ss_pred EEEEEcCCCeeEEEEeCCCCCeEEEEEcCCCC-EEEEEECCCeEEEEECCCCeEEE-EEeCCCCCeEEEEEcCCCCEEEE
Q 001462 82 IKLWDLEESKMVRTLTGHKSNCTAVEFHPFGE-FFASGCMDTNLKIWDIRKKGCIH-TYKGHTRGINTIRFTPDGRWVVS 159 (1074)
Q Consensus 82 I~VWDl~tgk~i~tl~~h~~~VtsLafSPdg~-~LaSgS~DGsI~IWDi~tg~~v~-~l~~h~~~VtsLafSPdG~~LaS 159 (1074)
+.+|+...+..+..+.+|...|.+++|+|++. .+++++.|+.|.+||...+..+. .+..|.... ...|++++.++++
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 258 (466)
T COG2319 180 IKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLAS 258 (466)
T ss_pred eEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEE
Confidence 99999999888999999999999999999998 55555899999999998787777 677787765 4489999988899
Q ss_pred EECCCeEEEEECCCCce-EEEeeecCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCCcEEEeeC--CCCCCeEEEEEec
Q 001462 160 GGFDNVVKVWDLTAGKL-LHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTR--PEVTGVHAITFHP 236 (1074)
Q Consensus 160 gs~DGsI~VWDl~tgk~-v~~~~~h~g~ItsLafSPdg~lLaTGS~DGtI~IWDl~tg~~i~t~~--~~~~~ItsIafSP 236 (1074)
++.|+.+++||+..... +..+..|...+.++.|+|++..+++++.|+.+.+||..+........ .|...+..+.|.+
T Consensus 259 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (466)
T COG2319 259 GSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSP 338 (466)
T ss_pred ecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECC
Confidence 99999999999987664 44446678899999999988888889999999999999887766665 6666789999943
Q ss_pred CCCEEEEE--ECCcEEEEEecCCeeeeccccCCceeeEEEecCCCEEEE-EECCCeEEEEEcCCCceeeeecCCCCCCCC
Q 001462 237 DGRTLFSG--FDDNLKVYSWEPVICHDSVDMGWSTLGDLCINDGKLLGC-SFYRNSVGIWVADVSHVEPYGVGAPEPDQS 313 (1074)
Q Consensus 237 DG~~LasG--sd~~I~Vwd~~s~~~~~~l~~~~s~~~~l~spDGklLAs-gs~DGsV~IWDld~~~l~~~~~~~~~~~~~ 313 (1074)
++..++.+ .++.+.+|++...................+.+ ...+.. +..++.+.+|+............. ..
T Consensus 339 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 413 (466)
T COG2319 339 DGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLSVSFSP-DGRVVSSGSTDGTVRLWDLSTGSLLRNLDGH----TS 413 (466)
T ss_pred CCCEEEEeecCCCcEEeeecCCCceeEEecCCceEEEEEECC-CCCEEEEecCCCceEEEecccCeeeeeccCC----CC
Confidence 32455554 45568888887766222222221133344444 333333 678999999998766655544211 17
Q ss_pred ceeEEEEcCCCC
Q 001462 314 ICTEVKFNPPGS 325 (1074)
Q Consensus 314 ~ItsVaFSPDGs 325 (1074)
.+....|++++.
T Consensus 414 ~~~~~~~~~~~~ 425 (466)
T COG2319 414 RVTSLDFSPDGK 425 (466)
T ss_pred cEEEEEECCCCc
Confidence 888999999888
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.4e-19 Score=190.00 Aligned_cols=283 Identities=16% Similarity=0.293 Sum_probs=214.9
Q ss_pred EecCCCCEEEEEEecCCCcEEEEEECCCeEEEEECCCCce-------E---E-----EeeCCCCCeEEEEEcC-CCCEEE
Q 001462 11 FVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTA-------L---M-----SLCGLSSPVDSVAFDS-AEVLVL 74 (1074)
Q Consensus 11 L~gHs~~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~k~-------l---~-----sl~~hs~~ItsLafSp-dg~~La 74 (1074)
...|.+.|+++.+.+...+|+++|+.||.|.+||++.... . . .-.+|...|..+.|.| |.-.+.
T Consensus 39 ~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFt 118 (397)
T KOG4283|consen 39 VRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFT 118 (397)
T ss_pred eccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceee
Confidence 3568999999999998889999999999999999954321 1 1 1136778899999999 556888
Q ss_pred EEEcCCeEEEEEcCCCeeEEEEeCCCCCeEEEEEcCCC---CEEEEEECCCeEEEEECCCCeEEEEEeCCCCCeEEEEEc
Q 001462 75 AGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFG---EFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFT 151 (1074)
Q Consensus 75 tGs~DG~I~VWDl~tgk~i~tl~~h~~~VtsLafSPdg---~~LaSgS~DGsI~IWDi~tg~~v~~l~~h~~~VtsLafS 151 (1074)
+++.|.+++|||..+-+....|+ ..+.|+.-+|+|-. -.+|+|..|-.|++.|+.+|.+.+.+.+|.+.|.++.|+
T Consensus 119 ssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Ws 197 (397)
T KOG4283|consen 119 SSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWS 197 (397)
T ss_pred cccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEec
Confidence 89999999999999988888776 57789999999843 367788888899999999999999999999999999999
Q ss_pred CCCCE-EEEEECCCeEEEEECCCC-ceEEE--------------eeecCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCC
Q 001462 152 PDGRW-VVSGGFDNVVKVWDLTAG-KLLHD--------------FKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLET 215 (1074)
Q Consensus 152 PdG~~-LaSgs~DGsI~VWDl~tg-k~v~~--------------~~~h~g~ItsLafSPdg~lLaTGS~DGtI~IWDl~t 215 (1074)
|...| |++|+.||.|++||++.. .+... -..|.+.+..++|..++.++++++.|..+++|+..+
T Consensus 198 p~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~ 277 (397)
T KOG4283|consen 198 PSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMES 277 (397)
T ss_pred cCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeeccc
Confidence 97665 678999999999999753 22222 235778899999999999999999999999999988
Q ss_pred CcEEEeeCC---C----CCCeEEEEEecCCCEEEEEECCcEEEEEecCCeeeeccccCCceeeE-EEecCCCEEEEEECC
Q 001462 216 FELIGSTRP---E----VTGVHAITFHPDGRTLFSGFDDNLKVYSWEPVICHDSVDMGWSTLGD-LCINDGKLLGCSFYR 287 (1074)
Q Consensus 216 g~~i~t~~~---~----~~~ItsIafSPDG~~LasGsd~~I~Vwd~~s~~~~~~l~~~~s~~~~-l~spDGklLAsgs~D 287 (1074)
|+......+ + ...+. +.--..+.++..-.++++.++.+-.+..+..+..+...+.+ ++-++=+...+|..|
T Consensus 278 G~ntl~~~g~~~~n~~~~~~~~-~~~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~~fq~~~tg~~d 356 (397)
T KOG4283|consen 278 GRNTLREFGPIIHNQTTSFAVH-IQSMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTHLKRINCAAYRPDFEQCFTGDMN 356 (397)
T ss_pred CcccccccccccccccccceEE-EeecccceEEEEecCCeEEEEEccCceEEEeeecccceeeEEeecCchhhhhccccC
Confidence 754221111 0 01111 22111223333445677888887777666666555444433 344677778889999
Q ss_pred CeEEEEEc
Q 001462 288 NSVGIWVA 295 (1074)
Q Consensus 288 GsV~IWDl 295 (1074)
+.|..|-.
T Consensus 357 ~ni~~w~p 364 (397)
T KOG4283|consen 357 GNIYMWSP 364 (397)
T ss_pred Cccccccc
Confidence 99999954
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.1e-16 Score=175.24 Aligned_cols=307 Identities=30% Similarity=0.551 Sum_probs=239.4
Q ss_pred EEecCCCCEEEEEEecCCCcEEEEEECCCeEEEEECCCCc-eEEEeeCCCC-CeEEEEE-cCCCC-EEEEEEc-CCeEEE
Q 001462 10 EFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPT-ALMSLCGLSS-PVDSVAF-DSAEV-LVLAGAS-TGVIKL 84 (1074)
Q Consensus 10 ~L~gHs~~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~k-~l~sl~~hs~-~ItsLaf-Spdg~-~LatGs~-DG~I~V 84 (1074)
.+..|...|.++.|.+.+ ..++.++.|+.+.+|+...+. ....+..+.. .+..+.+ ++++. +++..+. |+.+.+
T Consensus 60 ~~~~~~~~i~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 138 (466)
T COG2319 60 LLRGHEDSITSIAFSPDG-ELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKL 138 (466)
T ss_pred eeeeccceEEEEEECCCC-cEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEE
Confidence 467899999999999998 778888899999999998876 6666666443 7777777 78777 5555444 899999
Q ss_pred EEcCC-CeeEEEEeCCCCCeEEEEEcCCCCEEEEEEC-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCC-EEEEEE
Q 001462 85 WDLEE-SKMVRTLTGHKSNCTAVEFHPFGEFFASGCM-DTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGR-WVVSGG 161 (1074)
Q Consensus 85 WDl~t-gk~i~tl~~h~~~VtsLafSPdg~~LaSgS~-DGsI~IWDi~tg~~v~~l~~h~~~VtsLafSPdG~-~LaSgs 161 (1074)
|++.. ......+..|...|..+.|+|++.++++++. |+.+++|++..+..+..+.+|...+.+++|+|++. ++++++
T Consensus 139 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 218 (466)
T COG2319 139 WDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGS 218 (466)
T ss_pred EEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEec
Confidence 99988 7888888999999999999999998888875 99999999998888889988999999999999998 555558
Q ss_pred CCCeEEEEECCCCceEE-EeeecCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCCcE-EEeeCCCCCCeEEEEEecCCC
Q 001462 162 FDNVVKVWDLTAGKLLH-DFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFEL-IGSTRPEVTGVHAITFHPDGR 239 (1074)
Q Consensus 162 ~DGsI~VWDl~tgk~v~-~~~~h~g~ItsLafSPdg~lLaTGS~DGtI~IWDl~tg~~-i~t~~~~~~~ItsIafSPDG~ 239 (1074)
.|+.|.+||...+.... .+..|.... ...|++++.++++++.|+.+++|++..... +..+..|...+.++.|.|++.
T Consensus 219 ~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 297 (466)
T COG2319 219 SDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGK 297 (466)
T ss_pred CCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCC
Confidence 99999999998888777 677777765 448999998899999999999999987654 444456678899999999888
Q ss_pred EEEEE-ECCcEEEEEecCCeeeeccc--cCCc-eeeEEEecCCCEEEEE-ECCCeEEEEEcCCCceeeeecCCCCCCCCc
Q 001462 240 TLFSG-FDDNLKVYSWEPVICHDSVD--MGWS-TLGDLCINDGKLLGCS-FYRNSVGIWVADVSHVEPYGVGAPEPDQSI 314 (1074)
Q Consensus 240 ~LasG-sd~~I~Vwd~~s~~~~~~l~--~~~s-~~~~l~spDGklLAsg-s~DGsV~IWDld~~~l~~~~~~~~~~~~~~ 314 (1074)
.++++ .++.+.+|+........... .+.. .....+.+++..++.+ ..|+.+.+|+..... ..... .....
T Consensus 298 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~----~~~~~ 372 (466)
T COG2319 298 LLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK-PLKTL----EGHSN 372 (466)
T ss_pred EEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCc-eeEEe----cCCce
Confidence 88875 45558999887665544433 2332 3333332233455555 678999999987666 22221 11222
Q ss_pred eeEEEEcCCC
Q 001462 315 CTEVKFNPPG 324 (1074)
Q Consensus 315 ItsVaFSPDG 324 (1074)
+..+.|++ .
T Consensus 373 ~~~~~~~~-~ 381 (466)
T COG2319 373 VLSVSFSP-D 381 (466)
T ss_pred EEEEEECC-C
Confidence 88899999 6
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.5e-18 Score=185.91 Aligned_cols=265 Identities=17% Similarity=0.272 Sum_probs=207.5
Q ss_pred CCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeeEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEE
Q 001462 58 SSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHT 137 (1074)
Q Consensus 58 s~~ItsLafSpdg~~LatGs~DG~I~VWDl~tgk~i~tl~~h~~~VtsLafSPdg~~LaSgS~DGsI~IWDi~tg~~v~~ 137 (1074)
...|..+.|+|.+..|++++.||.+++||+....+...++ |..++.+++|.+ ...+++|+.||.|+.+|+.++....
T Consensus 13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~-~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~~~- 89 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK-HGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNEDQ- 89 (323)
T ss_pred hhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhee-cCCceeeeeccC-CceEEEeccCceEEEEEecCCccee-
Confidence 5679999999999999999999999999998887666665 899999999996 5678999999999999998887554
Q ss_pred EeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeeecCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCCc
Q 001462 138 YKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFE 217 (1074)
Q Consensus 138 l~~h~~~VtsLafSPdG~~LaSgs~DGsI~VWDl~tgk~v~~~~~h~g~ItsLafSPdg~lLaTGS~DGtI~IWDl~tg~ 217 (1074)
+..|..++.|+.+++....+++|+.|+.|++||.+....+..+.. ...|.++... |+.|++|+.|..+.+||+++..
T Consensus 90 igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~-~kkVy~~~v~--g~~LvVg~~~r~v~iyDLRn~~ 166 (323)
T KOG1036|consen 90 IGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQ-GKKVYCMDVS--GNRLVVGTSDRKVLIYDLRNLD 166 (323)
T ss_pred eccCCCceEEEEeeccCCeEEEcccCccEEEEecccccccccccc-CceEEEEecc--CCEEEEeecCceEEEEEccccc
Confidence 445999999999999888899999999999999987555555553 3478888775 7889999999999999999876
Q ss_pred EEEee--CCCCCCeEEEEEecCCCEEEE-EECCcEEEEEecCC----------eeeeccccC----CceeeEEEecCCCE
Q 001462 218 LIGST--RPEVTGVHAITFHPDGRTLFS-GFDDNLKVYSWEPV----------ICHDSVDMG----WSTLGDLCINDGKL 280 (1074)
Q Consensus 218 ~i~t~--~~~~~~ItsIafSPDG~~Las-Gsd~~I~Vwd~~s~----------~~~~~l~~~----~s~~~~l~spDGkl 280 (1074)
..... ......++++++-|++.-.++ .-+|.+.+=.++.. +||.....+ +.+....|+|--+.
T Consensus 167 ~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~t 246 (323)
T KOG1036|consen 167 EPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGT 246 (323)
T ss_pred chhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccce
Confidence 54432 233456899999997655555 56777766666543 344443322 33445566677889
Q ss_pred EEEEECCCeEEEEEcCCCce-eeeecCCCCCCCCceeEEEEcCCCCcceeEEEEEeccC
Q 001462 281 LGCSFYRNSVGIWVADVSHV-EPYGVGAPEPDQSICTEVKFNPPGSHSLEKVGIIGRST 338 (1074)
Q Consensus 281 LAsgs~DGsV~IWDld~~~l-~~~~~~~~~~~~~~ItsVaFSPDGs~~Lv~vlavG~st 338 (1074)
|++|+.||.|.+||+...+. ..+ ..-...|.+++|+-||. .++++.+.
T Consensus 247 faTgGsDG~V~~Wd~~~rKrl~q~-----~~~~~SI~slsfs~dG~-----~LAia~sy 295 (323)
T KOG1036|consen 247 FATGGSDGIVNIWDLFNRKRLKQL-----AKYETSISSLSFSMDGS-----LLAIASSY 295 (323)
T ss_pred EEecCCCceEEEccCcchhhhhhc-----cCCCCceEEEEeccCCC-----eEEEEech
Confidence 99999999999999854432 222 23367799999999999 78887775
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.83 E-value=7.7e-20 Score=214.85 Aligned_cols=278 Identities=21% Similarity=0.369 Sum_probs=212.4
Q ss_pred CCCEEEEEEecCCCcEEEEEECCCeEEEEECCCC----ceEEEeeCC---CCCeEEEEEcC-CCCEEEEEEcCCeEEEEE
Q 001462 15 SANVNCISIGKKACRFLITGGDDQKVNLWAIGKP----TALMSLCGL---SSPVDSVAFDS-AEVLVLAGASTGVIKLWD 86 (1074)
Q Consensus 15 s~~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~----k~l~sl~~h---s~~ItsLafSp-dg~~LatGs~DG~I~VWD 86 (1074)
....+.|...++- ..++.++. ..+.||.+... .+....... ...+..+.|+. +.++|++++..|.|.+||
T Consensus 39 k~~~nAIs~nr~~-~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWd 116 (839)
T KOG0269|consen 39 KAKANAISVNRDI-NQIVVAGR-SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWD 116 (839)
T ss_pred ccccceEeecCCc-ceeEEecc-cceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEe
Confidence 3456777777877 44555554 36777776322 111111111 12345678875 567999999999999999
Q ss_pred cCC---CeeEEEEeCCCCCeEEEEEcCCC-CEEEEEECCCeEEEEECCCCeEEEEEeCCCCCeEEEEEcC-CCCEEEEEE
Q 001462 87 LEE---SKMVRTLTGHKSNCTAVEFHPFG-EFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTP-DGRWVVSGG 161 (1074)
Q Consensus 87 l~t---gk~i~tl~~h~~~VtsLafSPdg-~~LaSgS~DGsI~IWDi~tg~~v~~l~~h~~~VtsLafSP-dG~~LaSgs 161 (1074)
+.. .+.+..|..|...+.+++|++.. .+|++|++||.|++||++..+....+.+....|..+.|+| .+.+|+++.
T Consensus 117 lnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~ 196 (839)
T KOG0269|consen 117 LNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIH 196 (839)
T ss_pred cCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEec
Confidence 986 56677888999999999999865 5889999999999999999998888888888999999999 678899999
Q ss_pred CCCeEEEEECCCC-ceEEEeeecCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCCcE--EEeeCCCCCCeEEEEEecCC
Q 001462 162 FDNVVKVWDLTAG-KLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFEL--IGSTRPEVTGVHAITFHPDG 238 (1074)
Q Consensus 162 ~DGsI~VWDl~tg-k~v~~~~~h~g~ItsLafSPdg~lLaTGS~DGtI~IWDl~tg~~--i~t~~~~~~~ItsIafSPDG 238 (1074)
..|.|.+||++.. +....+.+|.|+|.|+.|+|++.+||+|+.|+.|+|||..+.+. +.++ ....++.++.|-|+.
T Consensus 197 dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tI-nTiapv~rVkWRP~~ 275 (839)
T KOG0269|consen 197 DSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTI-NTIAPVGRVKWRPAR 275 (839)
T ss_pred CCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEE-eecceeeeeeeccCc
Confidence 9999999999876 45677889999999999999999999999999999999986543 2222 224678999999987
Q ss_pred CEEEE-E---ECCcEEEEEecC-CeeeeccccCCceeeEEEec--CCCEEEEEECCCeEEEEEc
Q 001462 239 RTLFS-G---FDDNLKVYSWEP-VICHDSVDMGWSTLGDLCIN--DGKLLGCSFYRNSVGIWVA 295 (1074)
Q Consensus 239 ~~Las-G---sd~~I~Vwd~~s-~~~~~~l~~~~s~~~~l~sp--DGklLAsgs~DGsV~IWDl 295 (1074)
.+.++ + .|-.|+|||+.. ......+..+...+..++++ |...|.+++.||.|..-.+
T Consensus 276 ~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~ 339 (839)
T KOG0269|consen 276 SYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLF 339 (839)
T ss_pred cchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHHHhhh
Confidence 66554 3 355699999975 44455566666777777765 3566777778876654433
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.83 E-value=6.6e-20 Score=200.82 Aligned_cols=281 Identities=19% Similarity=0.274 Sum_probs=220.7
Q ss_pred EEEeeCCCCCeEEEEEcCCC-CEEEEEEcCCeEEEEEcCCCeeEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEC
Q 001462 51 LMSLCGLSSPVDSVAFDSAE-VLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDI 129 (1074)
Q Consensus 51 l~sl~~hs~~ItsLafSpdg-~~LatGs~DG~I~VWDl~tgk~i~tl~~h~~~VtsLafSPdg~~LaSgS~DGsI~IWDi 129 (1074)
+..+.+|..+|.|++=+|+. ..+++|+.||.|+|||+....+...+..|.+.|..|++.. ..+++++.|.+|+.|.+
T Consensus 59 v~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~ 136 (433)
T KOG0268|consen 59 VGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKI 136 (433)
T ss_pred hhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeec
Confidence 34568999999999999987 7899999999999999999999999999999999999986 66888889999999997
Q ss_pred CCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeeecCCCeEEEEEcCCC-cEEEEEeCCCeE
Q 001462 130 RKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLE-FLLATGSADRTV 208 (1074)
Q Consensus 130 ~tg~~v~~l~~h~~~VtsLafSPdG~~LaSgs~DGsI~VWDl~tgk~v~~~~~h~g~ItsLafSPdg-~lLaTGS~DGtI 208 (1074)
.. ..++++.+ ...+..+.-+..+..++++|. .|.|||..-..++..+......|.++.|+|.. .+|++++.|+.|
T Consensus 137 ~~-~p~~tilg-~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsI 212 (433)
T KOG0268|consen 137 DG-PPLHTILG-KSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSI 212 (433)
T ss_pred cC-Ccceeeec-cccccccccccccccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCce
Confidence 64 46777764 344677776666777888875 58999999889999998878889999999975 677788899999
Q ss_pred EEEECCCCcEEEeeCCCCCCeEEEEEecCCCEEEEEECC-cEEEEEecCCee-eecc-ccCCceeeEEEecCCCEEEEEE
Q 001462 209 KFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGFDD-NLKVYSWEPVIC-HDSV-DMGWSTLGDLCINDGKLLGCSF 285 (1074)
Q Consensus 209 ~IWDl~tg~~i~t~~~~~~~ItsIafSPDG~~LasGsd~-~I~Vwd~~s~~~-~~~l-~~~~s~~~~l~spDGklLAsgs 285 (1074)
.+||++.+.++...... ..-..|+|+|.+-.+++|.++ .++.||...... ...+ .+...+....++|.|+-|++|+
T Consensus 213 vLyD~R~~~Pl~KVi~~-mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~Efvsgs 291 (433)
T KOG0268|consen 213 VLYDLRQASPLKKVILT-MRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGS 291 (433)
T ss_pred EEEecccCCccceeeee-ccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhcccc
Confidence 99999999887765432 334789999977666666544 577777664332 2222 2334556677889999999999
Q ss_pred CCCeEEEEEcCCCceeeeecCCCCCCCCceeEEEEcCCCCcceeEEEEEeccCcceEEeec
Q 001462 286 YRNSVGIWVADVSHVEPYGVGAPEPDQSICTEVKFNPPGSHSLEKVGIIGRSTSGFRSTSP 346 (1074)
Q Consensus 286 ~DGsV~IWDld~~~l~~~~~~~~~~~~~~ItsVaFSPDGs~~Lv~vlavG~stG~~r~ivp 346 (1074)
+|.+|+||.++.++-..... ..--..|.||.||.|.. .+..|...|-+|++-.
T Consensus 292 yDksIRIf~~~~~~SRdiYh---tkRMq~V~~Vk~S~Dsk-----yi~SGSdd~nvRlWka 344 (433)
T KOG0268|consen 292 YDKSIRIFPVNHGHSRDIYH---TKRMQHVFCVKYSMDSK-----YIISGSDDGNVRLWKA 344 (433)
T ss_pred ccceEEEeecCCCcchhhhh---HhhhheeeEEEEecccc-----EEEecCCCcceeeeec
Confidence 99999999987665433221 33456899999999999 6777777775555533
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.4e-18 Score=195.18 Aligned_cols=282 Identities=14% Similarity=0.234 Sum_probs=223.6
Q ss_pred CCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCC--CeeEEEEeCCCCCeEEEEEcCCCC-EEEEEECCCeEEEEECCCCeE
Q 001462 58 SSPVDSVAFDSAEVLVLAGASTGVIKLWDLEE--SKMVRTLTGHKSNCTAVEFHPFGE-FFASGCMDTNLKIWDIRKKGC 134 (1074)
Q Consensus 58 s~~ItsLafSpdg~~LatGs~DG~I~VWDl~t--gk~i~tl~~h~~~VtsLafSPdg~-~LaSgS~DGsI~IWDi~tg~~ 134 (1074)
.++|+++.|+|....|++++.||.++||.++. ...++.+.-...+|.+.+|.|+|. .+++++....++.||+.+.+.
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~ 292 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKV 292 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccccc
Confidence 46899999999999999999999999998864 345666666688999999999999 889999999999999988765
Q ss_pred EEE--EeCCC-CCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeeecCCCeEEEEEcCCCcEEEEEeCCCeEEEE
Q 001462 135 IHT--YKGHT-RGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFW 211 (1074)
Q Consensus 135 v~~--l~~h~-~~VtsLafSPdG~~LaSgs~DGsI~VWDl~tgk~v~~~~~h~g~ItsLafSPdg~lLaTGS~DGtI~IW 211 (1074)
... ..++. ..+..+..++++++|+..|..|.|.+....+++.+..++ ..+.|..++|+.+++.|++.+.+|.|++|
T Consensus 293 ~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsSdsk~l~~~~~~GeV~v~ 371 (514)
T KOG2055|consen 293 TKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSSDSKELLASGGTGEVYVW 371 (514)
T ss_pred ccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEecCCcEEEEEcCCceEEEE
Confidence 332 22332 357788899999999999999999999999999999988 57889999999999999999999999999
Q ss_pred ECCCCcEEEeeCCCCC-CeEEEEEecCCCEEEEEECCc-EEEEEecCCe------eeecc-ccCCceeeEEEecCCCEEE
Q 001462 212 DLETFELIGSTRPEVT-GVHAITFHPDGRTLFSGFDDN-LKVYSWEPVI------CHDSV-DMGWSTLGDLCINDGKLLG 282 (1074)
Q Consensus 212 Dl~tg~~i~t~~~~~~-~ItsIafSPDG~~LasGsd~~-I~Vwd~~s~~------~~~~l-~~~~s~~~~l~spDGklLA 282 (1074)
|++...++..+....+ .-++++.+++|.||++|++.+ +.|||.+... .+..+ .....+..+.|.+|+++||
T Consensus 372 nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLA 451 (514)
T KOG2055|consen 372 NLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILA 451 (514)
T ss_pred ecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhh
Confidence 9999988888765422 236788889999999998866 8899976432 12222 2334566677889999998
Q ss_pred EEE--CCCeEEEEEcCCCce-eeeecCCCCCCCCceeEEEEcCCCCcceeEEEEEeccCcceEEeecC
Q 001462 283 CSF--YRNSVGIWVADVSHV-EPYGVGAPEPDQSICTEVKFNPPGSHSLEKVGIIGRSTSGFRSTSPD 347 (1074)
Q Consensus 283 sgs--~DGsV~IWDld~~~l-~~~~~~~~~~~~~~ItsVaFSPDGs~~Lv~vlavG~stG~~r~ivpD 347 (1074)
.++ .+..+++-.+..-.+ .-|... ...-+.++|++|||.|+ .+++|...|..+++-+.
T Consensus 452 iaS~~~knalrLVHvPS~TVFsNfP~~--n~~vg~vtc~aFSP~sG-----~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 452 IASRVKKNALRLVHVPSCTVFSNFPTS--NTKVGHVTCMAFSPNSG-----YLAVGNEAGRVHLFKLH 512 (514)
T ss_pred hhhhccccceEEEeccceeeeccCCCC--CCcccceEEEEecCCCc-----eEEeecCCCceeeEeec
Confidence 876 456788877653332 223221 34468899999999999 89999999977766543
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.82 E-value=7.7e-19 Score=201.58 Aligned_cols=282 Identities=18% Similarity=0.282 Sum_probs=222.1
Q ss_pred EEEEecCCCCEEEEEEecCCCcEEEEEECCCeEEEEECCCCceEEEeeCCCCCeEEEEEcCCCC--EEEEEEcCCeEEEE
Q 001462 8 LQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEV--LVLAGASTGVIKLW 85 (1074)
Q Consensus 8 v~~L~gHs~~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~k~l~sl~~hs~~ItsLafSpdg~--~LatGs~DG~I~VW 85 (1074)
-..|.||++.|.||...|.| .+|++|+.||+|+||.+.++.++..+. ....|.|++|+|.+. .||++- .+.+.|.
T Consensus 393 ~lvyrGHtg~Vr~iSvdp~G-~wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~-~~~~~iv 469 (733)
T KOG0650|consen 393 ALVYRGHTGLVRSISVDPSG-EWLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAV-GECVLIV 469 (733)
T ss_pred eeeEeccCCeEEEEEecCCc-ceeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEe-cCceEEe
Confidence 34689999999999999988 899999999999999999999999876 567899999999765 333332 2233333
Q ss_pred EcCCC-------------------------------------eeEEEEeCCCCCeEEEEEcCCCCEEEEEECC---CeEE
Q 001462 86 DLEES-------------------------------------KMVRTLTGHKSNCTAVEFHPFGEFFASGCMD---TNLK 125 (1074)
Q Consensus 86 Dl~tg-------------------------------------k~i~tl~~h~~~VtsLafSPdg~~LaSgS~D---GsI~ 125 (1074)
+..-| .-++....|...|..+.||..|.||++...+ ..|.
T Consensus 470 np~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~Vl 549 (733)
T KOG0650|consen 470 NPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVL 549 (733)
T ss_pred CccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEE
Confidence 32111 0123334578899999999999999998654 5699
Q ss_pred EEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeeecCCCeEEEEEcCCCcEEEEEeCC
Q 001462 126 IWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSAD 205 (1074)
Q Consensus 126 IWDi~tg~~v~~l~~h~~~VtsLafSPdG~~LaSgs~DGsI~VWDl~tgk~v~~~~~h~g~ItsLafSPdg~lLaTGS~D 205 (1074)
|+++.......-|....+.|.++.|+|...+|++++ ...|++||+..+.+++.+......|..++++|.|.-|+.|+.|
T Consensus 550 iHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaT-q~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d 628 (733)
T KOG0650|consen 550 IHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVAT-QRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYD 628 (733)
T ss_pred EEecccccccCchhhcCCceeEEEecCCCceEEEEe-ccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCC
Confidence 999987776666766677899999999988888877 4679999999988888887777889999999999999999999
Q ss_pred CeEEEEECCCC-cEEEeeCCCCCCeEEEEEecCCCEEEEEEC-CcEEEEEecC-------C--eeeeccccC-----Cce
Q 001462 206 RTVKFWDLETF-ELIGSTRPEVTGVHAITFHPDGRTLFSGFD-DNLKVYSWEP-------V--ICHDSVDMG-----WST 269 (1074)
Q Consensus 206 GtI~IWDl~tg-~~i~t~~~~~~~ItsIafSPDG~~LasGsd-~~I~Vwd~~s-------~--~~~~~l~~~-----~s~ 269 (1074)
+.+..||+.-. +....+..|...+++++|++.-.++++|++ +.+.||.-.- . ..+..+..+ ..+
T Consensus 629 ~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gV 708 (733)
T KOG0650|consen 629 KKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGV 708 (733)
T ss_pred CeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccce
Confidence 99999999854 566778888899999999999999999987 5566665221 0 112222222 334
Q ss_pred eeEEEecCCCEEEEEECCCeEEEE
Q 001462 270 LGDLCINDGKLLGCSFYRNSVGIW 293 (1074)
Q Consensus 270 ~~~l~spDGklLAsgs~DGsV~IW 293 (1074)
+...|.|..-+|++++.||.|++|
T Consensus 709 Ld~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 709 LDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred EeecccCCCceEEecCCCceEEee
Confidence 555688899999999999999999
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.3e-19 Score=204.10 Aligned_cols=236 Identities=19% Similarity=0.384 Sum_probs=205.7
Q ss_pred CCCEEEEEEecCCCcEEEEEECCCeEEEEECCCCceE--EEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCCee
Q 001462 15 SANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTAL--MSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKM 92 (1074)
Q Consensus 15 s~~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~k~l--~sl~~hs~~ItsLafSpdg~~LatGs~DG~I~VWDl~tgk~ 92 (1074)
...|.++.+.||| +-|++|+.-.++.|||+...... ..+....-.+++++.+||.+.+++++.||.|.|||+.+..+
T Consensus 465 dnyiRSckL~pdg-rtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~ 543 (705)
T KOG0639|consen 465 DNYIRSCKLLPDG-RTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTL 543 (705)
T ss_pred ccceeeeEecCCC-ceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEccccee
Confidence 5678999999999 88999999999999999765443 33444445678899999999999999999999999999999
Q ss_pred EEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC
Q 001462 93 VRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLT 172 (1074)
Q Consensus 93 i~tl~~h~~~VtsLafSPdg~~LaSgS~DGsI~IWDi~tg~~v~~l~~h~~~VtsLafSPdG~~LaSgs~DGsI~VWDl~ 172 (1074)
++.|++|.+.+.||.+++||..|.+|+-|.+|+.||++.+..+.... ....|.++.++|++.||++|-+++.+.+....
T Consensus 544 VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhd-F~SQIfSLg~cP~~dWlavGMens~vevlh~s 622 (705)
T KOG0639|consen 544 VRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTS 622 (705)
T ss_pred eecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhh-hhhhheecccCCCccceeeecccCcEEEEecC
Confidence 99999999999999999999999999999999999999988776655 45679999999999999999999999888864
Q ss_pred CCceEEEeeecCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCCcEEEeeCCCCCCeEEEEEecCCCEEEEEECC-cEEE
Q 001462 173 AGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGFDD-NLKV 251 (1074)
Q Consensus 173 tgk~v~~~~~h~g~ItsLafSPdg~lLaTGS~DGtI~IWDl~tg~~i~t~~~~~~~ItsIafSPDG~~LasGsd~-~I~V 251 (1074)
+...+.+..|+..|.++.|.+.|+++++.+.|..+..|...-|..+..... ...|.++.++.|.+||++|+.+ ...|
T Consensus 623 -kp~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE-~SsVlsCDIS~ddkyIVTGSGdkkATV 700 (705)
T KOG0639|consen 623 -KPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKE-SSSVLSCDISFDDKYIVTGSGDKKATV 700 (705)
T ss_pred -CccceeecccccEEEEEEecccCceeeecCchhhhhhccCccccceeeccc-cCcceeeeeccCceEEEecCCCcceEE
Confidence 445566777999999999999999999999999999999998887776543 4679999999999999998765 5667
Q ss_pred EEe
Q 001462 252 YSW 254 (1074)
Q Consensus 252 wd~ 254 (1074)
|.+
T Consensus 701 YeV 703 (705)
T KOG0639|consen 701 YEV 703 (705)
T ss_pred EEE
Confidence 754
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.82 E-value=9.9e-20 Score=213.96 Aligned_cols=219 Identities=23% Similarity=0.510 Sum_probs=185.3
Q ss_pred CEEEEEEecCCCcEEEEEECCCeEEEEECCC---CceEEEeeCCCCCeEEEEEcC-CCCEEEEEEcCCeEEEEEcCCCee
Q 001462 17 NVNCISIGKKACRFLITGGDDQKVNLWAIGK---PTALMSLCGLSSPVDSVAFDS-AEVLVLAGASTGVIKLWDLEESKM 92 (1074)
Q Consensus 17 ~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t---~k~l~sl~~hs~~ItsLafSp-dg~~LatGs~DG~I~VWDl~tgk~ 92 (1074)
.+..|.|+....++||+++..|.|.+||+.. .+.+..+..|...+.+++|++ ...+|++|+.||.|++||++..+-
T Consensus 89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S 168 (839)
T KOG0269|consen 89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKS 168 (839)
T ss_pred ehhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccc
Confidence 3556778866668999999999999999977 566678899999999999998 457899999999999999999988
Q ss_pred EEEEeCCCCCeEEEEEcC-CCCEEEEEECCCeEEEEECCCC-eEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Q 001462 93 VRTLTGHKSNCTAVEFHP-FGEFFASGCMDTNLKIWDIRKK-GCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWD 170 (1074)
Q Consensus 93 i~tl~~h~~~VtsLafSP-dg~~LaSgS~DGsI~IWDi~tg-~~v~~l~~h~~~VtsLafSPdG~~LaSgs~DGsI~VWD 170 (1074)
..++.+..+.|.++.|+| .+.+|+++...|.+.+||++.. .+...+.+|.++|.|+.|+|++.|||+||.|+.|+|||
T Consensus 169 ~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd 248 (839)
T KOG0269|consen 169 KSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWD 248 (839)
T ss_pred cccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEe
Confidence 888888889999999999 4678999999999999999865 45677889999999999999999999999999999999
Q ss_pred CCCCce--EEEeeecCCCeEEEEEcCCC-cEEEEEe--CCCeEEEEECCC-CcEEEeeCCCCCCeEEEEEec
Q 001462 171 LTAGKL--LHDFKFHEGHIRSIDFHPLE-FLLATGS--ADRTVKFWDLET-FELIGSTRPEVTGVHAITFHP 236 (1074)
Q Consensus 171 l~tgk~--v~~~~~h~g~ItsLafSPdg-~lLaTGS--~DGtI~IWDl~t-g~~i~t~~~~~~~ItsIafSP 236 (1074)
+.+++. ...+. ...++.++.|-|.. ..|++++ .|-.|+|||++. .-+...+..|...++.++|..
T Consensus 249 ~t~~~~~~~~tIn-Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~ 319 (839)
T KOG0269|consen 249 MTDSRAKPKHTIN-TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDS 319 (839)
T ss_pred ccCCCccceeEEe-ecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccC
Confidence 987654 33333 34679999999975 4566654 477899999985 445567788888899999976
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.4e-18 Score=184.85 Aligned_cols=281 Identities=18% Similarity=0.256 Sum_probs=211.3
Q ss_pred EEEEECCCCce-----EEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCCee-----EEEEeCCCCCeEEEEEc
Q 001462 40 VNLWAIGKPTA-----LMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKM-----VRTLTGHKSNCTAVEFH 109 (1074)
Q Consensus 40 V~IWDl~t~k~-----l~sl~~hs~~ItsLafSpdg~~LatGs~DG~I~VWDl~tgk~-----i~tl~~h~~~VtsLafS 109 (1074)
..-|+.+.... +..+++|...|++++|+.||++|++++.|+.|++|++++-.. ++. .-..+.-+.+.|.
T Consensus 63 ~~~~k~~q~~f~Hpl~~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~-nve~dhpT~V~Fa 141 (420)
T KOG2096|consen 63 NDQWKAKQPTFVHPLNVSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQ-NVEYDHPTRVVFA 141 (420)
T ss_pred hhhhcccCCCcccchhhhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhc-cccCCCceEEEEC
Confidence 34455544333 335689999999999999999999999999999999986321 111 1122356789999
Q ss_pred CCCCEEEEEEC-CCeEEEEECCCC---eEEE---------EEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCce
Q 001462 110 PFGEFFASGCM-DTNLKIWDIRKK---GCIH---------TYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKL 176 (1074)
Q Consensus 110 Pdg~~LaSgS~-DGsI~IWDi~tg---~~v~---------~l~~h~~~VtsLafSPdG~~LaSgs~DGsI~VWDl~tgk~ 176 (1074)
||.+-+++... ...+++|.+... .... .-+.|...+..+-...++++|++++.|..|.+|++. |+.
T Consensus 142 pDc~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~ 220 (420)
T KOG2096|consen 142 PDCKSVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQL 220 (420)
T ss_pred CCcceEEEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cce
Confidence 99886666554 456999976432 1111 112355566677777788999999999999999998 999
Q ss_pred EEEeeecCCCeEEEEEcCCCcEEEEEeCCCeEEEEECC---CC-----cEEEeeCCCCCCeEEEEEecCCCEEEEE-ECC
Q 001462 177 LHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLE---TF-----ELIGSTRPEVTGVHAITFHPDGRTLFSG-FDD 247 (1074)
Q Consensus 177 v~~~~~h~g~ItsLafSPdg~lLaTGS~DGtI~IWDl~---tg-----~~i~t~~~~~~~ItsIafSPDG~~LasG-sd~ 247 (1074)
+..+......-+..+.+|+|++|++++..-.|++|.+- .| ..+..+.+|...|..++|+++...+++. -||
T Consensus 221 L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG 300 (420)
T KOG2096|consen 221 LQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDG 300 (420)
T ss_pred eeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCC
Confidence 99988777778889999999999999988899999864 22 2346688999999999999999988885 578
Q ss_pred cEEEEEecCCeee------------eccccCCceeeEEEecCCCEEEEEECCCeEEEEEcCCCceeeeecCCCCCCCCce
Q 001462 248 NLKVYSWEPVICH------------DSVDMGWSTLGDLCINDGKLLGCSFYRNSVGIWVADVSHVEPYGVGAPEPDQSIC 315 (1074)
Q Consensus 248 ~I~Vwd~~s~~~~------------~~l~~~~s~~~~l~spDGklLAsgs~DGsV~IWDld~~~l~~~~~~~~~~~~~~I 315 (1074)
.++|||.+-.... .....+..++....+|.|+.||.+ ....+++|..+.+...+... ..|...|
T Consensus 301 ~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s-~gs~l~~~~se~g~~~~~~e---~~h~~~I 376 (420)
T KOG2096|consen 301 KWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVS-FGSDLKVFASEDGKDYPELE---DIHSTTI 376 (420)
T ss_pred cEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEee-cCCceEEEEcccCccchhHH---HhhcCce
Confidence 8999998642211 112334566777788999999987 56779999887665544332 6789999
Q ss_pred eEEEEcCCCCc
Q 001462 316 TEVKFNPPGSH 326 (1074)
Q Consensus 316 tsVaFSPDGs~ 326 (1074)
.+++|++||..
T Consensus 377 s~is~~~~g~~ 387 (420)
T KOG2096|consen 377 SSISYSSDGKY 387 (420)
T ss_pred eeEEecCCCcE
Confidence 99999999994
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.3e-18 Score=195.99 Aligned_cols=235 Identities=21% Similarity=0.405 Sum_probs=200.9
Q ss_pred EEEEE-ECCCeEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeeEEEEeCCCCCeEEEEE
Q 001462 30 FLITG-GDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEF 108 (1074)
Q Consensus 30 lLaTG-s~DGtV~IWDl~t~k~l~sl~~hs~~ItsLafSpdg~~LatGs~DG~I~VWDl~tgk~i~tl~~h~~~VtsLaf 108 (1074)
|++++ .....|.+|.+..........-..++|.|++-+|+|.+|+.|+..|.|++|.+.+|.++..+..|...|+|+.|
T Consensus 52 yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~f 131 (476)
T KOG0646|consen 52 YLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKF 131 (476)
T ss_pred heeeecccCccccccccCchhhhhhhcccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEE
Confidence 34444 33456889998776666555556788999999999999999999999999999999999999999999999999
Q ss_pred cCCCCEEEEEECCCeEEEEECC---------CCeEEEEEeCCCCCeEEEEEcCCC--CEEEEEECCCeEEEEECCCCceE
Q 001462 109 HPFGEFFASGCMDTNLKIWDIR---------KKGCIHTYKGHTRGINTIRFTPDG--RWVVSGGFDNVVKVWDLTAGKLL 177 (1074)
Q Consensus 109 SPdg~~LaSgS~DGsI~IWDi~---------tg~~v~~l~~h~~~VtsLafSPdG--~~LaSgs~DGsI~VWDl~tgk~v 177 (1074)
+-||.+|++|+.||.|.+|++. +-++++.+..|.-+|+.+...+.| .+|++++.|.++++||+..|.++
T Consensus 132 s~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LL 211 (476)
T KOG0646|consen 132 SDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLL 211 (476)
T ss_pred eCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceee
Confidence 9999999999999999999763 235678888999999999887643 48999999999999999999998
Q ss_pred EEeeecCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCC----------------cEEEeeCCCCC--CeEEEEEecCCC
Q 001462 178 HDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETF----------------ELIGSTRPEVT--GVHAITFHPDGR 239 (1074)
Q Consensus 178 ~~~~~h~g~ItsLafSPdg~lLaTGS~DGtI~IWDl~tg----------------~~i~t~~~~~~--~ItsIafSPDG~ 239 (1074)
..+. ....+.+++.+|.+..+++|+.+|.|.+.++... ..+..+.+|.+ .|+|++++-||.
T Consensus 212 lti~-fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~Dgt 290 (476)
T KOG0646|consen 212 LTIT-FPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGT 290 (476)
T ss_pred EEEe-cCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCcc
Confidence 8876 4678999999999999999999999999887542 23445667777 899999999999
Q ss_pred EEEEEE-CCcEEEEEecCCeeeecccc
Q 001462 240 TLFSGF-DDNLKVYSWEPVICHDSVDM 265 (1074)
Q Consensus 240 ~LasGs-d~~I~Vwd~~s~~~~~~l~~ 265 (1074)
.|++|. ||.+.|||.....+...+..
T Consensus 291 lLlSGd~dg~VcvWdi~S~Q~iRtl~~ 317 (476)
T KOG0646|consen 291 LLLSGDEDGKVCVWDIYSKQCIRTLQT 317 (476)
T ss_pred EEEeeCCCCCEEEEecchHHHHHHHhh
Confidence 999985 67799999999988887763
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.6e-18 Score=194.65 Aligned_cols=289 Identities=16% Similarity=0.230 Sum_probs=216.8
Q ss_pred EEEEecCCCCEEEEEEecCCC-cEEEEEECCCeEEEEECCC----CceEEEeeCCCCCeEEEEEcC-CCCEEEEEEcCCe
Q 001462 8 LQEFVAHSANVNCISIGKKAC-RFLITGGDDQKVNLWAIGK----PTALMSLCGLSSPVDSVAFDS-AEVLVLAGASTGV 81 (1074)
Q Consensus 8 v~~L~gHs~~Vt~IafSPdg~-~lLaTGs~DGtV~IWDl~t----~k~l~sl~~hs~~ItsLafSp-dg~~LatGs~DG~ 81 (1074)
...+..|.+.|+|++|+|... .++|+|..-|.|-+||+.. ...+..+..|..+|.++.|+| +...+++.++||+
T Consensus 179 ~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGt 258 (498)
T KOG4328|consen 179 LNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGT 258 (498)
T ss_pred cceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCce
Confidence 345678999999999999876 7899999999999999942 223556678999999999999 4578999999999
Q ss_pred EEEEEcCCCee--EEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeE-EEEEeCCCCCeEEEEEcCCC-CEE
Q 001462 82 IKLWDLEESKM--VRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGC-IHTYKGHTRGINTIRFTPDG-RWV 157 (1074)
Q Consensus 82 I~VWDl~tgk~--i~tl~~h~~~VtsLafSPdg~~LaSgS~DGsI~IWDi~tg~~-v~~l~~h~~~VtsLafSPdG-~~L 157 (1074)
|++-|++.+.. +..+......+..+.|+.+...++.+..=|.+.+||.+.++. ...+..|...|.+++++|.. .+|
T Consensus 259 iR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~l 338 (498)
T KOG4328|consen 259 IRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFL 338 (498)
T ss_pred eeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchhe
Confidence 99999987643 333333455677888988888888888878999999997664 56666788899999999954 578
Q ss_pred EEEECCCeEEEEECCCCce----EEEeeecCCCeEEEEEcCCCcEEEEEeCCCeEEEEECC----CCcEEEeeCCCC---
Q 001462 158 VSGGFDNVVKVWDLTAGKL----LHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLE----TFELIGSTRPEV--- 226 (1074)
Q Consensus 158 aSgs~DGsI~VWDl~tgk~----v~~~~~h~g~ItsLafSPdg~lLaTGS~DGtI~IWDl~----tg~~i~t~~~~~--- 226 (1074)
++++.|++.+|||++.-.. +...-.|...|.+..|+|.+..|++.+.|..|+|||.. .......+....
T Consensus 339 aT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~ 418 (498)
T KOG4328|consen 339 ATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTG 418 (498)
T ss_pred eecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceeeccCccc
Confidence 9999999999999986322 22233588999999999988779999999999999984 233333322111
Q ss_pred --CCeEEEEEecCCCEEEEEE-CCcEEEEEecCCeeeeccccCCc---eeeEEEecCCC-EEEEEECCCeEEEEEcC
Q 001462 227 --TGVHAITFHPDGRTLFSGF-DDNLKVYSWEPVICHDSVDMGWS---TLGDLCINDGK-LLGCSFYRNSVGIWVAD 296 (1074)
Q Consensus 227 --~~ItsIafSPDG~~LasGs-d~~I~Vwd~~s~~~~~~l~~~~s---~~~~l~spDGk-lLAsgs~DGsV~IWDld 296 (1074)
-..-...|.|+..++++|. -..|-||+-..+..+..+..... .....|.|-+. +++.|+..|.|+||--+
T Consensus 419 RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~k 495 (498)
T KOG4328|consen 419 RWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTNK 495 (498)
T ss_pred ccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEEEecC
Confidence 1234568999999999984 45699999888775544333222 22233456666 55666677899998543
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.4e-18 Score=191.34 Aligned_cols=242 Identities=24% Similarity=0.465 Sum_probs=187.2
Q ss_pred EecCCCCEEEEEEecCC-CcEEEEEECCCeEEEEECC----------------CCceEEEeeCCCCCeEEEEEcCCC-CE
Q 001462 11 FVAHSANVNCISIGKKA-CRFLITGGDDQKVNLWAIG----------------KPTALMSLCGLSSPVDSVAFDSAE-VL 72 (1074)
Q Consensus 11 L~gHs~~Vt~IafSPdg-~~lLaTGs~DGtV~IWDl~----------------t~k~l~sl~~hs~~ItsLafSpdg-~~ 72 (1074)
..+|.+.|+-+...+-+ ..+.++-+..|.|+||++. ..+.+.++.+|...=+.++|||-. -.
T Consensus 147 ~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~ 226 (440)
T KOG0302|consen 147 SIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGR 226 (440)
T ss_pred ccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccc
Confidence 45688888888887764 3567777889999999983 235677888999999999999932 34
Q ss_pred EEEEEcCCeEEEEEcCCCeeE---EEEeCCCCCeEEEEEcCCC-CEEEEEECCCeEEEEECCCC---eEEEEEeCCCCCe
Q 001462 73 VLAGASTGVIKLWDLEESKMV---RTLTGHKSNCTAVEFHPFG-EFFASGCMDTNLKIWDIRKK---GCIHTYKGHTRGI 145 (1074)
Q Consensus 73 LatGs~DG~I~VWDl~tgk~i---~tl~~h~~~VtsLafSPdg-~~LaSgS~DGsI~IWDi~tg---~~v~~l~~h~~~V 145 (1074)
|++|..-+.|++|...+|.-. ..+.+|...|..++|+|.. ..|++|+-||+|+|||++.+ .++.. +.|...|
T Consensus 227 LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~-kAh~sDV 305 (440)
T KOG0302|consen 227 LLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVST-KAHNSDV 305 (440)
T ss_pred cccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEe-eccCCce
Confidence 778877788999998876432 3456799999999999965 48899999999999999987 34443 7899999
Q ss_pred EEEEEcCCCCEEEEEECCCeEEEEECCC---CceEEEeeecCCCeEEEEEcCC-CcEEEEEeCCCeEEEEECCCCcE---
Q 001462 146 NTIRFTPDGRWVVSGGFDNVVKVWDLTA---GKLLHDFKFHEGHIRSIDFHPL-EFLLATGSADRTVKFWDLETFEL--- 218 (1074)
Q Consensus 146 tsLafSPdG~~LaSgs~DGsI~VWDl~t---gk~v~~~~~h~g~ItsLafSPd-g~lLaTGS~DGtI~IWDl~tg~~--- 218 (1074)
..|.|+.+-.+|++|+.||.++|||++. ++++..|+.|..+|+++.|+|. ...|++++.|..|.|||+..-.-
T Consensus 306 NVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee 385 (440)
T KOG0302|consen 306 NVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEE 385 (440)
T ss_pred eeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhh
Confidence 9999999888999999999999999986 5678999999999999999996 46788888999999999863110
Q ss_pred --------EE-----eeCCC--CCCeEEEEEecCC-CEEEEEECCcEEEEE
Q 001462 219 --------IG-----STRPE--VTGVHAITFHPDG-RTLFSGFDDNLKVYS 253 (1074)
Q Consensus 219 --------i~-----t~~~~--~~~ItsIafSPDG-~~LasGsd~~I~Vwd 253 (1074)
+. .+-.| ...+..+.|+++- .+|++..-+++.||.
T Consensus 386 ~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dGfnVfk 436 (440)
T KOG0302|consen 386 IDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDGFNVFK 436 (440)
T ss_pred hccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccceeEEE
Confidence 00 01111 2346677888763 344555555666664
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.7e-18 Score=182.80 Aligned_cols=242 Identities=20% Similarity=0.295 Sum_probs=192.5
Q ss_pred ecCCCCEEEEEEecCCCcEEEEEECCCeEEEEECCC----CceEEEeeCCCCCeEEEEEcC--CCCEEEEEEcCCeEEEE
Q 001462 12 VAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGK----PTALMSLCGLSSPVDSVAFDS--AEVLVLAGASTGVIKLW 85 (1074)
Q Consensus 12 ~gHs~~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t----~k~l~sl~~hs~~ItsLafSp--dg~~LatGs~DG~I~VW 85 (1074)
.+|.+-|+|+.|.+.| +.+|+|+.|++|+|||..+ .......+.|.+.|..+.|.+ -|+.+|+++.|+++.||
T Consensus 10 s~h~DlihdVs~D~~G-RRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iW 88 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYG-RRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIW 88 (361)
T ss_pred cCCcceeeeeeecccC-ceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeee
Confidence 4799999999999999 8899999999999999643 345566789999999999975 68999999999999999
Q ss_pred EcCC---------CeeEEEEeCCCCCeEEEEEcCC--CCEEEEEECCCeEEEEECCCC------eEEEEEe-------CC
Q 001462 86 DLEE---------SKMVRTLTGHKSNCTAVEFHPF--GEFFASGCMDTNLKIWDIRKK------GCIHTYK-------GH 141 (1074)
Q Consensus 86 Dl~t---------gk~i~tl~~h~~~VtsLafSPd--g~~LaSgS~DGsI~IWDi~tg------~~v~~l~-------~h 141 (1074)
.-.. .....++......|++++|.|. |-.+++++.||.|+||+.-.- ...+.++ .+
T Consensus 89 EE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~ 168 (361)
T KOG2445|consen 89 EEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKN 168 (361)
T ss_pred eecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccc
Confidence 7521 1234566777889999999985 668999999999999986432 2233333 35
Q ss_pred CCCeEEEEEcCC---CCEEEEEECC-----CeEEEEECCCC----ceEEEeeecCCCeEEEEEcCC----CcEEEEEeCC
Q 001462 142 TRGINTIRFTPD---GRWVVSGGFD-----NVVKVWDLTAG----KLLHDFKFHEGHIRSIDFHPL----EFLLATGSAD 205 (1074)
Q Consensus 142 ~~~VtsLafSPd---G~~LaSgs~D-----GsI~VWDl~tg----k~v~~~~~h~g~ItsLafSPd----g~lLaTGS~D 205 (1074)
.....|+.|+|. ..+|++|+.+ +.++||....+ ..+.++.+|..+|+.++|.|+ ..+||+++.|
T Consensus 169 ~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kD 248 (361)
T KOG2445|consen 169 KQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKD 248 (361)
T ss_pred cCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecC
Confidence 556789999973 4578887765 47888876543 345567789999999999996 4689999999
Q ss_pred CeEEEEECCC--------------------CcEEEeeCCCCCCeEEEEEecCCCEEEE-EECCcEEEEEec
Q 001462 206 RTVKFWDLET--------------------FELIGSTRPEVTGVHAITFHPDGRTLFS-GFDDNLKVYSWE 255 (1074)
Q Consensus 206 GtI~IWDl~t--------------------g~~i~t~~~~~~~ItsIafSPDG~~Las-Gsd~~I~Vwd~~ 255 (1074)
| |+||.+.. -+.+..+..|.+.|..+.|.-.|..|++ |.||.+++|...
T Consensus 249 g-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 249 G-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred c-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhh
Confidence 9 99999873 1245567889999999999999999998 567779998753
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.3e-18 Score=195.73 Aligned_cols=206 Identities=25% Similarity=0.495 Sum_probs=176.2
Q ss_pred EEEecCCCCEEEEEEecCCCcEEEEEECCCeEEEEECCCC-------ceEEEeeCCCCCeEEEEEcC-CCCEEEEEEcCC
Q 001462 9 QEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKP-------TALMSLCGLSSPVDSVAFDS-AEVLVLAGASTG 80 (1074)
Q Consensus 9 ~~L~gHs~~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~-------k~l~sl~~hs~~ItsLafSp-dg~~LatGs~DG 80 (1074)
..|.||...-+.|+|++.....|++|+.|+.|++||+... .....+.+|...|..++|++ +..+|++++.|+
T Consensus 171 l~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~ 250 (422)
T KOG0264|consen 171 LRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDG 250 (422)
T ss_pred eEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCC
Confidence 3688999988899999988889999999999999999543 23456789999999999998 557888999999
Q ss_pred eEEEEEcC--CCeeEEEEeCCCCCeEEEEEcCCC-CEEEEEECCCeEEEEECCCC-eEEEEEeCCCCCeEEEEEcCCC-C
Q 001462 81 VIKLWDLE--ESKMVRTLTGHKSNCTAVEFHPFG-EFFASGCMDTNLKIWDIRKK-GCIHTYKGHTRGINTIRFTPDG-R 155 (1074)
Q Consensus 81 ~I~VWDl~--tgk~i~tl~~h~~~VtsLafSPdg-~~LaSgS~DGsI~IWDi~tg-~~v~~l~~h~~~VtsLafSPdG-~ 155 (1074)
.+.|||++ +.+.......|.+.|.|++|+|-+ ..||+|+.|++|.+||+++- .+++.+.+|...|.++.|+|+. .
T Consensus 251 ~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~et 330 (422)
T KOG0264|consen 251 KLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNET 330 (422)
T ss_pred eEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCc
Confidence 99999999 566777788999999999999954 57888889999999999875 4688999999999999999954 5
Q ss_pred EEEEEECCCeEEEEECCCC--------------ceEEEeeecCCCeEEEEEcCCCc-EEEEEeCCCeEEEEECC
Q 001462 156 WVVSGGFDNVVKVWDLTAG--------------KLLHDFKFHEGHIRSIDFHPLEF-LLATGSADRTVKFWDLE 214 (1074)
Q Consensus 156 ~LaSgs~DGsI~VWDl~tg--------------k~v~~~~~h~g~ItsLafSPdg~-lLaTGS~DGtI~IWDl~ 214 (1074)
.|++++.|+.+.+||+..- +++....+|.+.|..+.|+|+.. .|++...|+.+.||...
T Consensus 331 vLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 331 VLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred eeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 7889999999999998542 23456668999999999999875 56677889999999876
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.1e-18 Score=194.39 Aligned_cols=283 Identities=17% Similarity=0.268 Sum_probs=217.3
Q ss_pred CCeEEEEECCCCceEEEeeCCC--CCeEEEEEcCCCCEEEEE--EcCCeEEEEEcCCC--eeEEEEeCCCCCeEEEEEcC
Q 001462 37 DQKVNLWAIGKPTALMSLCGLS--SPVDSVAFDSAEVLVLAG--ASTGVIKLWDLEES--KMVRTLTGHKSNCTAVEFHP 110 (1074)
Q Consensus 37 DGtV~IWDl~t~k~l~sl~~hs--~~ItsLafSpdg~~LatG--s~DG~I~VWDl~tg--k~i~tl~~h~~~VtsLafSP 110 (1074)
...++|||+........+..|+ -.+..+.|+.... |+++ +.|..|.+|.-... +....-+.....-.|+....
T Consensus 11 gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~-lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~~~s 89 (673)
T KOG4378|consen 11 GDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNF-LVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVACAS 89 (673)
T ss_pred CCceEEeecccccCccccccCCCCCcceeeeccccce-EEEeecCCceeEEEecccCCCCccceeeccccchHHHHhhhh
Confidence 3479999997655444443333 3488899987654 4443 45678888864322 12222122223445555555
Q ss_pred CCCEEEEEECCCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeeecCC-CeEE
Q 001462 111 FGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEG-HIRS 189 (1074)
Q Consensus 111 dg~~LaSgS~DGsI~IWDi~tg~~v~~l~~h~~~VtsLafSPdG~~LaSgs~DGsI~VWDl~tgk~v~~~~~h~g-~Its 189 (1074)
...|+++|+..+.|+|||++...+.+.+++|...|+++.+.....||++++..|.|.|..+.++.....|....+ .+.-
T Consensus 90 ~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRl 169 (673)
T KOG4378|consen 90 QSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRL 169 (673)
T ss_pred cceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEE
Confidence 668999999999999999998878888899999999999999899999999999999999999988888875534 4668
Q ss_pred EEEcCCC-cEEEEEeCCCeEEEEECCCCcEEEee-CCCCCCeEEEEEecCCCEEEE--EECCcEEEEEecCCeeeecccc
Q 001462 190 IDFHPLE-FLLATGSADRTVKFWDLETFELIGST-RPEVTGVHAITFHPDGRTLFS--GFDDNLKVYSWEPVICHDSVDM 265 (1074)
Q Consensus 190 LafSPdg-~lLaTGS~DGtI~IWDl~tg~~i~t~-~~~~~~ItsIafSPDG~~Las--Gsd~~I~Vwd~~s~~~~~~l~~ 265 (1074)
+.|+|.. .+|.+++.+|.|.+||+....++..+ ..|..+...|+|+|....|++ |.|..|.+||.........+..
T Consensus 170 l~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y 249 (673)
T KOG4378|consen 170 LRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTY 249 (673)
T ss_pred eecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceeee
Confidence 9999965 56778899999999999977666544 568888999999998766654 7899999999998877777777
Q ss_pred CCceeeEEEecCCCEEEEEECCCeEEEEEcCCCceeeeecCCCCCCCCceeEEEEcCC
Q 001462 266 GWSTLGDLCINDGKLLGCSFYRNSVGIWVADVSHVEPYGVGAPEPDQSICTEVKFNPP 323 (1074)
Q Consensus 266 ~~s~~~~l~spDGklLAsgs~DGsV~IWDld~~~l~~~~~~~~~~~~~~ItsVaFSPD 323 (1074)
........+.++|.+|+.|...|.|..||+.... .|..+. ..|...|++|+|-|.
T Consensus 250 ~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k-~Pv~v~--sah~~sVt~vafq~s 304 (673)
T KOG4378|consen 250 SHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTK-APVAVR--SAHDASVTRVAFQPS 304 (673)
T ss_pred cCCcceeeecCCceEEEeecCCceEEEEecccCC-CCceEe--eecccceeEEEeeec
Confidence 6667777888999999999999999999997543 333322 467788999999884
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.9e-18 Score=181.78 Aligned_cols=257 Identities=18% Similarity=0.276 Sum_probs=206.5
Q ss_pred eCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCC---eeEEEEeCCCCCeEEEEEcC--CCCEEEEEECCCeEEEEEC
Q 001462 55 CGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEES---KMVRTLTGHKSNCTAVEFHP--FGEFFASGCMDTNLKIWDI 129 (1074)
Q Consensus 55 ~~hs~~ItsLafSpdg~~LatGs~DG~I~VWDl~tg---k~i~tl~~h~~~VtsLafSP--dg~~LaSgS~DGsI~IWDi 129 (1074)
..|...|..+...--|+.|++++.|+.|+|+.++.+ +++.+|.+|.++|..++|.. .|.+|++++.||.|.||.-
T Consensus 8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke 87 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKE 87 (299)
T ss_pred hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEec
Confidence 357777887777777999999999999999999864 56889999999999999976 7999999999999999998
Q ss_pred CCCe--EEEEEeCCCCCeEEEEEcCC--CCEEEEEECCCeEEEEECCCC---ceEEEeeecCCCeEEEEEcCC---C---
Q 001462 130 RKKG--CIHTYKGHTRGINTIRFTPD--GRWVVSGGFDNVVKVWDLTAG---KLLHDFKFHEGHIRSIDFHPL---E--- 196 (1074)
Q Consensus 130 ~tg~--~v~~l~~h~~~VtsLafSPd--G~~LaSgs~DGsI~VWDl~tg---k~v~~~~~h~g~ItsLafSPd---g--- 196 (1074)
.++. ..+.+..|...|++++|-|. |-.|++++.||.|.|.+.+.. .......+|.-.|++++|.|- |
T Consensus 88 ~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~ 167 (299)
T KOG1332|consen 88 ENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLV 167 (299)
T ss_pred CCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCcccc
Confidence 7764 34455678999999999984 568999999999999988654 223445689999999999995 4
Q ss_pred --------cEEEEEeCCCeEEEEECCCCc--EEEeeCCCCCCeEEEEEecCCCEEEEEECCcEEEEEecCCeeeeccccC
Q 001462 197 --------FLLATGSADRTVKFWDLETFE--LIGSTRPEVTGVHAITFHPDGRTLFSGFDDNLKVYSWEPVICHDSVDMG 266 (1074)
Q Consensus 197 --------~lLaTGS~DGtI~IWDl~tg~--~i~t~~~~~~~ItsIafSPDG~~LasGsd~~I~Vwd~~s~~~~~~l~~~ 266 (1074)
+.|++|+.|..|+||+...+. .-..+..|.+.|+.++|.|.-.+
T Consensus 168 ~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl-------------------------- 221 (299)
T KOG1332|consen 168 DQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGL-------------------------- 221 (299)
T ss_pred ccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCC--------------------------
Confidence 569999999999999998753 33457889999999999986211
Q ss_pred CceeeEEEecCCCEEEEEECCCeEEEEEcCCCceeeeecCCCCCCCCceeEEEEcCCCCcceeEEEEEeccCcceEEeec
Q 001462 267 WSTLGDLCINDGKLLGCSFYRNSVGIWVADVSHVEPYGVGAPEPDQSICTEVKFNPPGSHSLEKVGIIGRSTSGFRSTSP 346 (1074)
Q Consensus 267 ~s~~~~l~spDGklLAsgs~DGsV~IWDld~~~l~~~~~~~~~~~~~~ItsVaFSPDGs~~Lv~vlavG~stG~~r~ivp 346 (1074)
...+||+++.||+|.||..+ ....++...+.+.....+.++.||+.|. +++++..+-.+.++.+
T Consensus 222 ----------~~s~iAS~SqDg~viIwt~~-~e~e~wk~tll~~f~~~~w~vSWS~sGn-----~LaVs~GdNkvtlwke 285 (299)
T KOG1332|consen 222 ----------PKSTIASCSQDGTVIIWTKD-EEYEPWKKTLLEEFPDVVWRVSWSLSGN-----ILAVSGGDNKVTLWKE 285 (299)
T ss_pred ----------CceeeEEecCCCcEEEEEec-CccCcccccccccCCcceEEEEEecccc-----EEEEecCCcEEEEEEe
Confidence 01248899999999999887 6666666555566788899999999999 7877777766666666
Q ss_pred CCcccceE
Q 001462 347 DYETKDIK 354 (1074)
Q Consensus 347 D~et~eI~ 354 (1074)
+ -.++..
T Consensus 286 ~-~~Gkw~ 292 (299)
T KOG1332|consen 286 N-VDGKWE 292 (299)
T ss_pred C-CCCcEE
Confidence 5 334333
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.5e-18 Score=183.12 Aligned_cols=260 Identities=17% Similarity=0.220 Sum_probs=198.6
Q ss_pred eEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeeEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeC
Q 001462 61 VDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKG 140 (1074)
Q Consensus 61 ItsLafSpdg~~LatGs~DG~I~VWDl~tgk~i~tl~~h~~~VtsLafSPdg~~LaSgS~DGsI~IWDi~tg~~v~~l~~ 140 (1074)
..|+.|++.|.+||+|+.||.|.|||+.+...-+.+.+|..+|.+++|+++|++|++++.|..|.+||+..|.+++.+.
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir- 104 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR- 104 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE-
Confidence 7899999999999999999999999999998888999999999999999999999999999999999999999999987
Q ss_pred CCCCeEEEEEcCCCC-EEEEEECCCeEEEEECCCCceEEEeeecC----CCeEEEEEcCCCcEEEEEeCCCeEEEEECCC
Q 001462 141 HTRGINTIRFTPDGR-WVVSGGFDNVVKVWDLTAGKLLHDFKFHE----GHIRSIDFHPLEFLLATGSADRTVKFWDLET 215 (1074)
Q Consensus 141 h~~~VtsLafSPdG~-~LaSgs~DGsI~VWDl~tgk~v~~~~~h~----g~ItsLafSPdg~lLaTGS~DGtI~IWDl~t 215 (1074)
...+|+.+.|+|... .+++.-.+..-.+.++..++....-.... ..-.+..|.+.|+++++|...|.+.+||..+
T Consensus 105 f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t 184 (405)
T KOG1273|consen 105 FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAET 184 (405)
T ss_pred ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecch
Confidence 678899999999433 33333334444555554432211111111 1123346889999999999999999999999
Q ss_pred CcEEEeeCCCC-CCeEEEEEecCCCEEEE-EECCcEEEEEecCCeee----------ecccc--CCceeeEEEecCCCEE
Q 001462 216 FELIGSTRPEV-TGVHAITFHPDGRTLFS-GFDDNLKVYSWEPVICH----------DSVDM--GWSTLGDLCINDGKLL 281 (1074)
Q Consensus 216 g~~i~t~~~~~-~~ItsIafSPDG~~Las-Gsd~~I~Vwd~~s~~~~----------~~l~~--~~s~~~~l~spDGklL 281 (1074)
.+++..++... ..|..+.|+..|++|+. ++|..|+.|+....... +..+. ...-..+.++.||.|+
T Consensus 185 ~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv 264 (405)
T KOG1273|consen 185 LECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYV 264 (405)
T ss_pred heeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEE
Confidence 99998887665 77999999999999998 57778999998631111 11110 1112245566799998
Q ss_pred EEEE-CCCeEEEEEcCCCceeeeecCCCCCCC-CceeEEEEcCCCC
Q 001462 282 GCSF-YRNSVGIWVADVSHVEPYGVGAPEPDQ-SICTEVKFNPPGS 325 (1074)
Q Consensus 282 Asgs-~DGsV~IWDld~~~l~~~~~~~~~~~~-~~ItsVaFSPDGs 325 (1074)
..|+ ....++||....+.+.... .+.. .....|.|+|--.
T Consensus 265 ~a~s~~aHaLYIWE~~~GsLVKIL----hG~kgE~l~DV~whp~rp 306 (405)
T KOG1273|consen 265 CAGSARAHALYIWEKSIGSLVKIL----HGTKGEELLDVNWHPVRP 306 (405)
T ss_pred EeccccceeEEEEecCCcceeeee----cCCchhheeeccccccee
Confidence 8776 3467999998888877665 3333 6778899999554
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.2e-17 Score=177.07 Aligned_cols=264 Identities=20% Similarity=0.303 Sum_probs=195.0
Q ss_pred eCCCCCeEEEEEcC-CCCEEEEEEcCCeEEEEEcCCCe------e----EE-----EEeCCCCCeEEEEEcC-CCCEEEE
Q 001462 55 CGLSSPVDSVAFDS-AEVLVLAGASTGVIKLWDLEESK------M----VR-----TLTGHKSNCTAVEFHP-FGEFFAS 117 (1074)
Q Consensus 55 ~~hs~~ItsLafSp-dg~~LatGs~DG~I~VWDl~tgk------~----i~-----tl~~h~~~VtsLafSP-dg~~LaS 117 (1074)
..|.+.|..+...+ .|+|+++|+.||.|.+||++... . .. .-.+|...|..+.|-| |...|.+
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts 119 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS 119 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence 45778999999987 78999999999999999997532 1 11 1135778899999999 4558888
Q ss_pred EECCCeEEEEECCCCeEEEEEeCCCCCeEEEEEcC---CCCEEEEEECCCeEEEEECCCCceEEEeeecCCCeEEEEEcC
Q 001462 118 GCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTP---DGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHP 194 (1074)
Q Consensus 118 gS~DGsI~IWDi~tg~~v~~l~~h~~~VtsLafSP---dG~~LaSgs~DGsI~VWDl~tgk~v~~~~~h~g~ItsLafSP 194 (1074)
++.|.++++||..+.+....|+ ..+.|++-+|+| ...++++|..+-.|++.|+.+|...+.+.+|.+.|.++.|+|
T Consensus 120 sSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp 198 (397)
T KOG4283|consen 120 SSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSP 198 (397)
T ss_pred ccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEecc
Confidence 8999999999999988888877 567789989998 345778888899999999999999999999999999999999
Q ss_pred CC-cEEEEEeCCCeEEEEECCCC-cEEEe--------------eCCCCCCeEEEEEecCCCEEEE-EECCcEEEEEecCC
Q 001462 195 LE-FLLATGSADRTVKFWDLETF-ELIGS--------------TRPEVTGVHAITFHPDGRTLFS-GFDDNLKVYSWEPV 257 (1074)
Q Consensus 195 dg-~lLaTGS~DGtI~IWDl~tg-~~i~t--------------~~~~~~~ItsIafSPDG~~Las-Gsd~~I~Vwd~~s~ 257 (1074)
.. -.|++|+.||.|++||++.. .+... -..|.+.+.+++|..+|.++++ |.++.+++|+...+
T Consensus 199 ~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G 278 (397)
T KOG4283|consen 199 SSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESG 278 (397)
T ss_pred CceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccC
Confidence 65 56889999999999999853 22222 2345677999999999999987 78899999998765
Q ss_pred eeeec--------cccCCceeeEEEecCCCEEEEEECCCeEEEEEcCCCceeeeecCCCCCCCCceeEEEEcCCCC
Q 001462 258 ICHDS--------VDMGWSTLGDLCINDGKLLGCSFYRNSVGIWVADVSHVEPYGVGAPEPDQSICTEVKFNPPGS 325 (1074)
Q Consensus 258 ~~~~~--------l~~~~s~~~~l~spDGklLAsgs~DGsV~IWDld~~~l~~~~~~~~~~~~~~ItsVaFSPDGs 325 (1074)
..... ...+.... ..+ -+...++.--.++.+.++.+-.+...... ..|...+.|.+|-|+-.
T Consensus 279 ~ntl~~~g~~~~n~~~~~~~~-~~~-~~s~vfv~~p~~~~lall~~~sgs~ir~l----~~h~k~i~c~~~~~~fq 348 (397)
T KOG4283|consen 279 RNTLREFGPIIHNQTTSFAVH-IQS-MDSDVFVLFPNDGSLALLNLLEGSFVRRL----STHLKRINCAAYRPDFE 348 (397)
T ss_pred cccccccccccccccccceEE-Eee-cccceEEEEecCCeEEEEEccCceEEEee----ecccceeeEEeecCchh
Confidence 42110 01111111 111 12222222234566777766444433332 35566778888888766
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=7.8e-18 Score=194.12 Aligned_cols=275 Identities=17% Similarity=0.283 Sum_probs=217.9
Q ss_pred CEEEEEEecCCCcEEEEEECCCeEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeeEEEE
Q 001462 17 NVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTL 96 (1074)
Q Consensus 17 ~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~k~l~sl~~hs~~ItsLafSpdg~~LatGs~DG~I~VWDl~tgk~i~tl 96 (1074)
.|+.++|-|||..++++++ ..+.+||.++|..+..+++|...|+|++|+.||+.+++|+.|..|.+|.-.-...+ .
T Consensus 14 ci~d~afkPDGsqL~lAAg--~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~L-k- 89 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAG--SRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGIL-K- 89 (1081)
T ss_pred chheeEECCCCceEEEecC--CEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEeccccccee-e-
Confidence 8999999999977666553 47999999999999999999999999999999999999999999999986432222 2
Q ss_pred eCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCce
Q 001462 97 TGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKL 176 (1074)
Q Consensus 97 ~~h~~~VtsLafSPdg~~LaSgS~DGsI~IWDi~tg~~v~~l~~h~~~VtsLafSPdG~~LaSgs~DGsI~VWDl~tgk~ 176 (1074)
..|.+.|.|+.|+|-...|++++. ...-+|....... ...+ ....+.+++|..||.+|+.|-.+|+|.+-+- +|+.
T Consensus 90 YSH~D~IQCMsFNP~~h~LasCsL-sdFglWS~~qK~V-~K~k-ss~R~~~CsWtnDGqylalG~~nGTIsiRNk-~gEe 165 (1081)
T KOG1538|consen 90 YSHNDAIQCMSFNPITHQLASCSL-SDFGLWSPEQKSV-SKHK-SSSRIICCSWTNDGQYLALGMFNGTISIRNK-NGEE 165 (1081)
T ss_pred eccCCeeeEeecCchHHHhhhcch-hhccccChhhhhH-Hhhh-hheeEEEeeecCCCcEEEEeccCceEEeecC-CCCc
Confidence 258999999999999999999875 3477898654432 2222 3456889999999999999999999999874 4554
Q ss_pred EEEee---ecCCCeEEEEEcCCC-----cEEEEEeCCCeEEEEECCCCcEEEeeCCCCCCeEEEEEecCCCEEEEE-ECC
Q 001462 177 LHDFK---FHEGHIRSIDFHPLE-----FLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSG-FDD 247 (1074)
Q Consensus 177 v~~~~---~h~g~ItsLafSPdg-----~lLaTGS~DGtI~IWDl~tg~~i~t~~~~~~~ItsIafSPDG~~LasG-sd~ 247 (1074)
...+. +...+|++++|+|.. ..+++.....++.+|.+. |+.+..-........|+.+.++|.|+..| +++
T Consensus 166 k~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk 244 (1081)
T KOG1538|consen 166 KVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQIGKDRALNFDPCCISYFTNGEYILLGGSDK 244 (1081)
T ss_pred ceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-ceeecccccCCCCchhheeccCCcEEEEccCCC
Confidence 44443 356789999999963 588888999999999886 66676555555566899999999999885 677
Q ss_pred cEEEEEecCCeeeeccccCCceeeEEEecCCCEEEEEECCCeEEEEEcCCCce
Q 001462 248 NLKVYSWEPVICHDSVDMGWSTLGDLCINDGKLLGCSFYRNSVGIWVADVSHV 300 (1074)
Q Consensus 248 ~I~Vwd~~s~~~~~~l~~~~s~~~~l~spDGklLAsgs~DGsV~IWDld~~~l 300 (1074)
.+.+|.-+....-..-+...-++.....|++++++.|..||+|..|++-...+
T Consensus 245 ~L~~fTR~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~fSTV 297 (1081)
T KOG1538|consen 245 QLSLFTRDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLIFSTV 297 (1081)
T ss_pred ceEEEeecCeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhhhHHhHh
Confidence 88888766554444334444556667779999999999999999998754433
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.1e-16 Score=178.07 Aligned_cols=299 Identities=19% Similarity=0.347 Sum_probs=208.9
Q ss_pred CCCEEEEEEecCCCcEEEEEECCCeEEEEECCCC---------ceEEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEE
Q 001462 15 SANVNCISIGKKACRFLITGGDDQKVNLWAIGKP---------TALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLW 85 (1074)
Q Consensus 15 s~~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~---------k~l~sl~~hs~~ItsLafSpdg~~LatGs~DG~I~VW 85 (1074)
..+|..+.|.+++...|++|+.|..|+||.+... +.+..+..|...|+++.|+|+|..|++|+.+|.|.+|
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lW 92 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLW 92 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEE
Confidence 3689999999998669999999999999987432 2344567899999999999999999999999999999
Q ss_pred EcC--------C--------CeeEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeCCCCCeEEEE
Q 001462 86 DLE--------E--------SKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIR 149 (1074)
Q Consensus 86 Dl~--------t--------gk~i~tl~~h~~~VtsLafSPdg~~LaSgS~DGsI~IWDi~tg~~v~~l~~h~~~VtsLa 149 (1074)
... + ......+.+|...|+.++|+|++.++++++.|..+++||+..|.....+..|...+..++
T Consensus 93 k~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgva 172 (434)
T KOG1009|consen 93 KQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVA 172 (434)
T ss_pred EecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccccceee
Confidence 765 2 234456678999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCEEEEEECCCeEEEEECCCCceEEEee-------------------ecC----CCeEEEEEcCCCcEEEEEeC--
Q 001462 150 FTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFK-------------------FHE----GHIRSIDFHPLEFLLATGSA-- 204 (1074)
Q Consensus 150 fSPdG~~LaSgs~DGsI~VWDl~tgk~v~~~~-------------------~h~----g~ItsLafSPdg~lLaTGS~-- 204 (1074)
|.|-++++++-+.|...+.+.+...+.++... .|+ .....++|+|+|.+|++...
T Consensus 173 wDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~ 252 (434)
T KOG1009|consen 173 WDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLF 252 (434)
T ss_pred cchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEccccee
Confidence 99999999998888866666654332221111 122 22456788999998887642
Q ss_pred --CCeE-----EEEECCC-CcEEEeeCCCCCCeEEEEEecCCCEEEEEECCcEEEEEecCCeeeeccccCCceeeEEEec
Q 001462 205 --DRTV-----KFWDLET-FELIGSTRPEVTGVHAITFHPDGRTLFSGFDDNLKVYSWEPVICHDSVDMGWSTLGDLCIN 276 (1074)
Q Consensus 205 --DGtI-----~IWDl~t-g~~i~t~~~~~~~ItsIafSPDG~~LasGsd~~I~Vwd~~s~~~~~~l~~~~s~~~~l~sp 276 (1074)
++.+ ++|+-.. ..+...+.....+...+.|+| ..|.+.+...... ....|
T Consensus 253 ~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~p-------------Vy~elrp~~~~~~---------~~~lp 310 (434)
T KOG1009|consen 253 KVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSP-------------VYYELRPLSSEKF---------LFVLP 310 (434)
T ss_pred eeCCceeeceeEeeccccccCceeecCCCCcceEEEEeee-------------eEEEecccccccc---------ccccc
Confidence 1111 2222110 111112222222222222222 2333333211110 11224
Q ss_pred CCCEEEEEECCCeEEEEEcCCCceeeeecCCCCCCCCceeEEEEcCCCCcceeEEEEEeccCcceEEe
Q 001462 277 DGKLLGCSFYRNSVGIWVADVSHVEPYGVGAPEPDQSICTEVKFNPPGSHSLEKVGIIGRSTSGFRST 344 (1074)
Q Consensus 277 DGklLAsgs~DGsV~IWDld~~~l~~~~~~~~~~~~~~ItsVaFSPDGs~~Lv~vlavG~stG~~r~i 344 (1074)
-+-.+|.++ .+.|.|||-+ ...|+..-. .-|...++.++|++||. ++++....|+-.++
T Consensus 311 yrlvfaiAt-~~svyvydtq--~~~P~~~v~-nihy~~iTDiaws~dg~-----~l~vSS~DGyCS~v 369 (434)
T KOG1009|consen 311 YRLVFAIAT-KNSVYVYDTQ--TLEPLAVVD-NIHYSAITDIAWSDDGS-----VLLVSSTDGFCSLV 369 (434)
T ss_pred cceEEEEee-cceEEEeccc--cccceEEEe-eeeeeeecceeecCCCc-----EEEEeccCCceEEE
Confidence 455566664 5569999654 555555433 57889999999999999 88888888865554
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.5e-17 Score=185.20 Aligned_cols=276 Identities=21% Similarity=0.320 Sum_probs=208.2
Q ss_pred CCceEEEeeCCCCCeEEEEEcCCC--CEEEEEEcCCeEEEEEcCC----CeeEEEEeCCCCCeEEEEEcCCC-CEEEEEE
Q 001462 47 KPTALMSLCGLSSPVDSVAFDSAE--VLVLAGASTGVIKLWDLEE----SKMVRTLTGHKSNCTAVEFHPFG-EFFASGC 119 (1074)
Q Consensus 47 t~k~l~sl~~hs~~ItsLafSpdg--~~LatGs~DG~I~VWDl~t----gk~i~tl~~h~~~VtsLafSPdg-~~LaSgS 119 (1074)
+-.....+..+...|++++|+|.. +.+++|...|.|-+||+.. ...+..+..|..+|.++.|+|.+ ..+++.+
T Consensus 175 ~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssS 254 (498)
T KOG4328|consen 175 DYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSS 254 (498)
T ss_pred cceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeec
Confidence 334445566788999999999954 5888898999999999952 23466778899999999999954 5788889
Q ss_pred CCCeEEEEECCCCeE--EEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCce-EEEeeecCCCeEEEEEcCC-
Q 001462 120 MDTNLKIWDIRKKGC--IHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKL-LHDFKFHEGHIRSIDFHPL- 195 (1074)
Q Consensus 120 ~DGsI~IWDi~tg~~--v~~l~~h~~~VtsLafSPdG~~LaSgs~DGsI~VWDl~tgk~-v~~~~~h~g~ItsLafSPd- 195 (1074)
.||+|++-|++.... +.........+..+.|+.+...+++++.=|.+.+||++++.. ...+..|...|.+++++|.
T Consensus 255 yDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~ 334 (498)
T KOG4328|consen 255 YDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVC 334 (498)
T ss_pred cCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCC
Confidence 999999999987643 333332445678888988888888888888999999998765 6667788889999999995
Q ss_pred CcEEEEEeCCCeEEEEECCCCc----EEEeeCCCCCCeEEEEEecCCCEEEE-EECCcEEEEEec----CCeeeecccc-
Q 001462 196 EFLLATGSADRTVKFWDLETFE----LIGSTRPEVTGVHAITFHPDGRTLFS-GFDDNLKVYSWE----PVICHDSVDM- 265 (1074)
Q Consensus 196 g~lLaTGS~DGtI~IWDl~tg~----~i~t~~~~~~~ItsIafSPDG~~Las-Gsd~~I~Vwd~~----s~~~~~~l~~- 265 (1074)
..+|++++.|++.+|||++... ++.....|.-.|.+..|||.|-.|++ +.|+.|+|||.. .......+.+
T Consensus 335 p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn 414 (498)
T KOG4328|consen 335 PWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHN 414 (498)
T ss_pred chheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceeecc
Confidence 5689999999999999998532 23445578888999999998655665 788999999984 2111111111
Q ss_pred -----CCceeeEEEecCCCEEEEEECCCeEEEEEcCCCceeeeecCCCCCCCCceeE-EEEcCCCC
Q 001462 266 -----GWSTLGDLCINDGKLLGCSFYRNSVGIWVADVSHVEPYGVGAPEPDQSICTE-VKFNPPGS 325 (1074)
Q Consensus 266 -----~~s~~~~l~spDGklLAsgs~DGsV~IWDld~~~l~~~~~~~~~~~~~~Its-VaFSPDGs 325 (1074)
....+...|-||..++++|..-..|.|+|-..+....-. . .+....|.+ ..|+|-+.
T Consensus 415 ~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el-~--~P~~~tI~~vn~~HP~~~ 477 (498)
T KOG4328|consen 415 NRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCEL-H--DPESSTIPSVNEFHPMRD 477 (498)
T ss_pred CcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeec-c--Cccccccccceeeccccc
Confidence 124566777899999999999999999998766633221 1 333434444 58999877
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.9e-17 Score=191.67 Aligned_cols=276 Identities=18% Similarity=0.296 Sum_probs=197.7
Q ss_pred EEEec--CCCcEEEEEECCCeEEEEECCCCc------eEEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCCee
Q 001462 21 ISIGK--KACRFLITGGDDQKVNLWAIGKPT------ALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKM 92 (1074)
Q Consensus 21 IafSP--dg~~lLaTGs~DGtV~IWDl~t~k------~l~sl~~hs~~ItsLafSpdg~~LatGs~DG~I~VWDl~tgk~ 92 (1074)
..|++ ...++|+.+..||.|.++|..... .+.....|...|..+.|-|....|++++.|.++++||+..+++
T Consensus 55 ~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l 134 (720)
T KOG0321|consen 55 DSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRL 134 (720)
T ss_pred ccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeecccee
Confidence 45544 445799999999999999975432 2355678999999999999777899999999999999999888
Q ss_pred EEE--EeCCCCCeEEEEEcCCCC-EEEEEECCCeEEEEECCCCe--------------------E-------EEEEeCCC
Q 001462 93 VRT--LTGHKSNCTAVEFHPFGE-FFASGCMDTNLKIWDIRKKG--------------------C-------IHTYKGHT 142 (1074)
Q Consensus 93 i~t--l~~h~~~VtsLafSPdg~-~LaSgS~DGsI~IWDi~tg~--------------------~-------v~~l~~h~ 142 (1074)
... +.+|.+.|.+++|.|.+. .|++|+.||.|.|||++... . +...+.+.
T Consensus 135 ~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s 214 (720)
T KOG0321|consen 135 VGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAAS 214 (720)
T ss_pred ecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhcccccccccc
Confidence 766 889999999999999664 78999999999999986322 0 11112333
Q ss_pred CCeEE---EEEcCCCCEEEEEEC-CCeEEEEECCCCceEEE--------eeec---CCCeEEEEEcCCCcEEEEEeCCCe
Q 001462 143 RGINT---IRFTPDGRWVVSGGF-DNVVKVWDLTAGKLLHD--------FKFH---EGHIRSIDFHPLEFLLATGSADRT 207 (1074)
Q Consensus 143 ~~Vts---LafSPdG~~LaSgs~-DGsI~VWDl~tgk~v~~--------~~~h---~g~ItsLafSPdg~lLaTGS~DGt 207 (1074)
..|.+ +.+..|...||+++. |+.|+|||++....... +..| .-.+.++.....|.+|++.+.|+.
T Consensus 215 ~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~s 294 (720)
T KOG0321|consen 215 NTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNS 294 (720)
T ss_pred CceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCc
Confidence 44444 555568888998887 99999999987543222 2223 234677878778899998899999
Q ss_pred EEEEECCCCc--EEEeeCCCCC--CeEEEEEecCCCEEEEE-ECCcEEEEEecCCeeeeccccC--CceeeEEEe--cCC
Q 001462 208 VKFWDLETFE--LIGSTRPEVT--GVHAITFHPDGRTLFSG-FDDNLKVYSWEPVICHDSVDMG--WSTLGDLCI--NDG 278 (1074)
Q Consensus 208 I~IWDl~tg~--~i~t~~~~~~--~ItsIafSPDG~~LasG-sd~~I~Vwd~~s~~~~~~l~~~--~s~~~~l~s--pDG 278 (1074)
|++|++.+.. ++..+.++.. ....-..+||+.+|++| ++...++|.+.....-..+..+ ..+....|. +.+
T Consensus 295 Iy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t 374 (720)
T KOG0321|consen 295 IYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATT 374 (720)
T ss_pred EEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCC
Confidence 9999998643 2233322211 12233568999999997 5667888888765443332222 222333333 466
Q ss_pred CEEEEEECCCeEEEEEcCC
Q 001462 279 KLLGCSFYRNSVGIWVADV 297 (1074)
Q Consensus 279 klLAsgs~DGsV~IWDld~ 297 (1074)
..+.| +.|..++||++..
T Consensus 375 ~v~Tc-SdD~~~kiW~l~~ 392 (720)
T KOG0321|consen 375 PVATC-SDDFRVKIWRLSN 392 (720)
T ss_pred Cceee-ccCcceEEEeccC
Confidence 66666 8999999999843
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.2e-16 Score=186.36 Aligned_cols=366 Identities=13% Similarity=0.207 Sum_probs=258.7
Q ss_pred ceEEEEecCCCCEEEEEEecCCC--cEEEEEECCCeEEEEECCCCc---------------------eEE----------
Q 001462 6 YKLQEFVAHSANVNCISIGKKAC--RFLITGGDDQKVNLWAIGKPT---------------------ALM---------- 52 (1074)
Q Consensus 6 ~~v~~L~gHs~~Vt~IafSPdg~--~lLaTGs~DGtV~IWDl~t~k---------------------~l~---------- 52 (1074)
..+.++.||.+.|.+|+|...+. .+|++++.|..|+||.+.-+. ...
T Consensus 182 ~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~ea 261 (764)
T KOG1063|consen 182 ARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEA 261 (764)
T ss_pred eEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhh
Confidence 56788999999999999987653 588999999999999872111 111
Q ss_pred EeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeeE-------EEEeCCCCCeEEEEEcCCCCEEEEEECCCeEE
Q 001462 53 SLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMV-------RTLTGHKSNCTAVEFHPFGEFFASGCMDTNLK 125 (1074)
Q Consensus 53 sl~~hs~~ItsLafSpdg~~LatGs~DG~I~VWDl~tgk~i-------~tl~~h~~~VtsLafSPdg~~LaSgS~DGsI~ 125 (1074)
.+.+|..-|+++.|+|.+..|++++.|.++.+|...+..-+ ..+.+.....+...|+|+++.+++-+..|..+
T Consensus 262 ll~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~h 341 (764)
T KOG1063|consen 262 LLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFH 341 (764)
T ss_pred hhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEE
Confidence 12489999999999999999999999999999987654221 22233455688999999999999999999999
Q ss_pred EEECCCC---eEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC----ceEEEeeecCCCeEEEEEcCCCcE
Q 001462 126 IWDIRKK---GCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAG----KLLHDFKFHEGHIRSIDFHPLEFL 198 (1074)
Q Consensus 126 IWDi~tg---~~v~~l~~h~~~VtsLafSPdG~~LaSgs~DGsI~VWDl~tg----k~v~~~~~h~g~ItsLafSPdg~l 198 (1074)
+|..... .....+.+|.+.|..++|+|.|.+|++.+.|.+-++|-.-.. ..+..-+.|...+.|++|-+....
T Consensus 342 lWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~ 421 (764)
T KOG1063|consen 342 LWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQ 421 (764)
T ss_pred EEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCce
Confidence 9983322 234456789999999999999999999999999998864311 122223457788999999886667
Q ss_pred EEEEeCCCeEEEEECCC-------------------------------------------Cc------------------
Q 001462 199 LATGSADRTVKFWDLET-------------------------------------------FE------------------ 217 (1074)
Q Consensus 199 LaTGS~DGtI~IWDl~t-------------------------------------------g~------------------ 217 (1074)
+++|.....+++|+... |.
T Consensus 422 FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ 501 (764)
T KOG1063|consen 422 FVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELT 501 (764)
T ss_pred eeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhcc
Confidence 77777777788886421 00
Q ss_pred ---------------EEEeeCCCCCCeEEEEEecCCCEEEEEECC------cEEEEEecCCeeeecc-ccCCceeeEEEe
Q 001462 218 ---------------LIGSTRPEVTGVHAITFHPDGRTLFSGFDD------NLKVYSWEPVICHDSV-DMGWSTLGDLCI 275 (1074)
Q Consensus 218 ---------------~i~t~~~~~~~ItsIafSPDG~~LasGsd~------~I~Vwd~~s~~~~~~l-~~~~s~~~~l~s 275 (1074)
.+.++.+|...|.+++.+|+|++++++... .|.+|+.........+ .+...+....|+
T Consensus 502 ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FS 581 (764)
T KOG1063|consen 502 EPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFS 581 (764)
T ss_pred CCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEEC
Confidence 011234555669999999999999986432 3888887776655544 344566778889
Q ss_pred cCCCEEEEEECCCeEEEEEcCCCceeeeecCCCCCCCCceeEEEEcCCCCcceeEEEEEeccC-cceEEeecCCcccceE
Q 001462 276 NDGKLLGCSFYRNSVGIWVADVSHVEPYGVGAPEPDQSICTEVKFNPPGSHSLEKVGIIGRST-SGFRSTSPDYETKDIK 354 (1074)
Q Consensus 276 pDGklLAsgs~DGsV~IWDld~~~l~~~~~~~~~~~~~~ItsVaFSPDGs~~Lv~vlavG~st-G~~r~ivpD~et~eI~ 354 (1074)
|||+||++.+.|.++.+|.........+.......|..-|-...|+||+.. .+.+... -..-|-+++.....+.
T Consensus 582 pdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~-----FaTaSRDK~VkVW~~~~~~d~~i~ 656 (764)
T KOG1063|consen 582 PDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKY-----FATASRDKKVKVWEEPDLRDKYIS 656 (764)
T ss_pred CCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccce-----eEEecCCceEEEEeccCchhhhhh
Confidence 999999999999999999874433333332233688888999999999993 3333333 2233444442111111
Q ss_pred EEeecCCCCccceeeecCCCCCC
Q 001462 355 TIYVDSTGGKPVASQKIGPLNSP 377 (1074)
Q Consensus 355 ~i~iDs~gGepv~~~~~sP~~s~ 377 (1074)
.+ .-..-++++.++.+-|..-.
T Consensus 657 ~~-a~~~~~~aVTAv~~~~~~~~ 678 (764)
T KOG1063|consen 657 RF-ACLKFSLAVTAVAYLPVDHN 678 (764)
T ss_pred hh-chhccCCceeeEEeeccccc
Confidence 11 11124566777777776433
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.2e-17 Score=193.37 Aligned_cols=260 Identities=20% Similarity=0.299 Sum_probs=194.2
Q ss_pred EEEEcC---CCCEEEEEEcCCeEEEEEcCCCee------EEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCe
Q 001462 63 SVAFDS---AEVLVLAGASTGVIKLWDLEESKM------VRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKG 133 (1074)
Q Consensus 63 sLafSp---dg~~LatGs~DG~I~VWDl~tgk~------i~tl~~h~~~VtsLafSPdg~~LaSgS~DGsI~IWDi~tg~ 133 (1074)
+..|++ ....|+.+..+|.|.++|...... +..+..|...|.++.|-|....|++++.|.++++||+....
T Consensus 54 ~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~ 133 (720)
T KOG0321|consen 54 ADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSR 133 (720)
T ss_pred cccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccce
Confidence 466665 346888999999999999865332 34556799999999999966789999999999999999998
Q ss_pred EEEE--EeCCCCCeEEEEEcCCC-CEEEEEECCCeEEEEECCCCc---------------------------eEEEeeec
Q 001462 134 CIHT--YKGHTRGINTIRFTPDG-RWVVSGGFDNVVKVWDLTAGK---------------------------LLHDFKFH 183 (1074)
Q Consensus 134 ~v~~--l~~h~~~VtsLafSPdG-~~LaSgs~DGsI~VWDl~tgk---------------------------~v~~~~~h 183 (1074)
++.. +.+|...|.++||.|.. ..|++|+.||.|.|||++-.. .+...+.+
T Consensus 134 l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~ 213 (720)
T KOG0321|consen 134 LVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAA 213 (720)
T ss_pred eecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccc
Confidence 8776 88999999999999954 578999999999999986321 01112234
Q ss_pred CCCeEE---EEEcCCCcEEEEEeC-CCeEEEEECCCCcEEEee--------CCC---CCCeEEEEEecCCCEEEE-EECC
Q 001462 184 EGHIRS---IDFHPLEFLLATGSA-DRTVKFWDLETFELIGST--------RPE---VTGVHAITFHPDGRTLFS-GFDD 247 (1074)
Q Consensus 184 ~g~Its---LafSPdg~lLaTGS~-DGtI~IWDl~tg~~i~t~--------~~~---~~~ItsIafSPDG~~Las-Gsd~ 247 (1074)
...|.+ +.+..|...||+++. |+.|++||+++....... ..+ ..++.++..+..|.+|++ +.|+
T Consensus 214 s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~ 293 (720)
T KOG0321|consen 214 SNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDN 293 (720)
T ss_pred cCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCC
Confidence 444554 555668888998887 999999999975543322 112 235778888888888877 6889
Q ss_pred cEEEEEecCCeeeecccc-----CCceeeEEEecCCCEEEEEECCCeEEEEEcCCCceeeeecCCCCCCCCceeEEEEcC
Q 001462 248 NLKVYSWEPVICHDSVDM-----GWSTLGDLCINDGKLLGCSFYRNSVGIWVADVSHVEPYGVGAPEPDQSICTEVKFNP 322 (1074)
Q Consensus 248 ~I~Vwd~~s~~~~~~l~~-----~~s~~~~l~spDGklLAsgs~DGsV~IWDld~~~l~~~~~~~~~~~~~~ItsVaFSP 322 (1074)
.|++|++..........+ .........++|+.+|++|++|...+||.++.-...+..+ .+|.-.|++|+|+|
T Consensus 294 sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l---~Ght~eVt~V~w~p 370 (720)
T KOG0321|consen 294 SIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALL---LGHTREVTTVRWLP 370 (720)
T ss_pred cEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhh---hCcceEEEEEeecc
Confidence 999999875433222111 1122333446899999999999999999997665554443 68899999999999
Q ss_pred CCC
Q 001462 323 PGS 325 (1074)
Q Consensus 323 DGs 325 (1074)
...
T Consensus 371 S~~ 373 (720)
T KOG0321|consen 371 SAT 373 (720)
T ss_pred ccC
Confidence 655
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.7e-15 Score=171.43 Aligned_cols=264 Identities=15% Similarity=0.208 Sum_probs=183.0
Q ss_pred EEEEEECCCeEEEEECCC-Cc--eEEEeeCCCCCeEEEEEcCCCCEEEEEE-cCCeEEEEEcC-CCee--EEEEeCCCCC
Q 001462 30 FLITGGDDQKVNLWAIGK-PT--ALMSLCGLSSPVDSVAFDSAEVLVLAGA-STGVIKLWDLE-ESKM--VRTLTGHKSN 102 (1074)
Q Consensus 30 lLaTGs~DGtV~IWDl~t-~k--~l~sl~~hs~~ItsLafSpdg~~LatGs-~DG~I~VWDl~-tgk~--i~tl~~h~~~ 102 (1074)
++++...++.|.+|++.+ ++ .+..+. +......++++|++++|++++ .++.|.+|++. ++.. ..... ....
T Consensus 4 ~y~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~ 81 (330)
T PRK11028 4 VYIASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGS 81 (330)
T ss_pred EEEEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCC
Confidence 344457789999999963 32 334443 345677899999999988765 47889999997 3432 22222 3345
Q ss_pred eEEEEEcCCCCEEEEEEC-CCeEEEEECCCCe----EEEEEeCCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEECCCCce
Q 001462 103 CTAVEFHPFGEFFASGCM-DTNLKIWDIRKKG----CIHTYKGHTRGINTIRFTPDGRWVVSGG-FDNVVKVWDLTAGKL 176 (1074)
Q Consensus 103 VtsLafSPdg~~LaSgS~-DGsI~IWDi~tg~----~v~~l~~h~~~VtsLafSPdG~~LaSgs-~DGsI~VWDl~tgk~ 176 (1074)
...+.|+|++++|++++. ++.|.+|++.... .+..+. +.....+++|+|+|+++++++ .++.|.+||+.+...
T Consensus 82 p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~ 160 (330)
T PRK11028 82 PTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGH 160 (330)
T ss_pred ceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCc
Confidence 678999999999888764 7899999986422 233332 233467889999999886655 568999999976332
Q ss_pred EE-------EeeecCCCeEEEEEcCCCcEEEEEeC-CCeEEEEECCC--C--cEEEeeCCC------CCCeEEEEEecCC
Q 001462 177 LH-------DFKFHEGHIRSIDFHPLEFLLATGSA-DRTVKFWDLET--F--ELIGSTRPE------VTGVHAITFHPDG 238 (1074)
Q Consensus 177 v~-------~~~~h~g~ItsLafSPdg~lLaTGS~-DGtI~IWDl~t--g--~~i~t~~~~------~~~ItsIafSPDG 238 (1074)
+. ... .......+.|+|+|++|+++.. ++.|.+|++.. + +.+..+... ......+.|+|+|
T Consensus 161 l~~~~~~~~~~~-~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg 239 (330)
T PRK11028 161 LVAQEPAEVTTV-EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDG 239 (330)
T ss_pred ccccCCCceecC-CCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCC
Confidence 21 111 1234678999999999988876 89999999973 2 223333211 1123468899999
Q ss_pred CEEEEEE--CCcEEEEEecCCe----eeeccccCCceeeEEEecCCCEEEEEEC-CCeEEEEEcCC
Q 001462 239 RTLFSGF--DDNLKVYSWEPVI----CHDSVDMGWSTLGDLCINDGKLLGCSFY-RNSVGIWVADV 297 (1074)
Q Consensus 239 ~~LasGs--d~~I~Vwd~~s~~----~~~~l~~~~s~~~~l~spDGklLAsgs~-DGsV~IWDld~ 297 (1074)
++|+++. ++.|.+|+++... ....+..+..+....+.+||++|+++.. ++.|.+|+++.
T Consensus 240 ~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~ 305 (330)
T PRK11028 240 RHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEIDG 305 (330)
T ss_pred CEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEcC
Confidence 9999974 4679999996432 2333334445566778899999998875 88999998853
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.9e-17 Score=184.28 Aligned_cols=240 Identities=20% Similarity=0.364 Sum_probs=185.3
Q ss_pred EEEEEEecC------CCcEEEEEECCCeEEEEECCC---CceEEE------------------eeCCCCCeEEEEEcCC-
Q 001462 18 VNCISIGKK------ACRFLITGGDDQKVNLWAIGK---PTALMS------------------LCGLSSPVDSVAFDSA- 69 (1074)
Q Consensus 18 Vt~IafSPd------g~~lLaTGs~DGtV~IWDl~t---~k~l~s------------------l~~hs~~ItsLafSpd- 69 (1074)
-.|++|... .++|+|.|..|..|.|||+.- -.+... -.+|+..|..+.|+.+
T Consensus 176 PLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~ 255 (463)
T KOG0270|consen 176 PLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNF 255 (463)
T ss_pred chhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhcccc
Confidence 467777543 136999999999999999831 111111 2368888889999875
Q ss_pred CCEEEEEEcCCeEEEEEcCCCeeEEEEeCCCCCeEEEEEcCC-CCEEEEEECCCeEEEEECCCCeEE-EEEeCCCCCeEE
Q 001462 70 EVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPF-GEFFASGCMDTNLKIWDIRKKGCI-HTYKGHTRGINT 147 (1074)
Q Consensus 70 g~~LatGs~DG~I~VWDl~tgk~i~tl~~h~~~VtsLafSPd-g~~LaSgS~DGsI~IWDi~tg~~v-~~l~~h~~~Vts 147 (1074)
.+.|++|+.|.+|++||+.+|++...+..|...|.++.|+|. ..+|++|+.|++|.++|.+..... ..++ ..+.|-.
T Consensus 256 ~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk-~~g~VEk 334 (463)
T KOG0270|consen 256 RNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWK-FDGEVEK 334 (463)
T ss_pred ceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEE-eccceEE
Confidence 468899999999999999999999999999999999999996 568999999999999999853322 2222 4567999
Q ss_pred EEEcCCC-CEEEEEECCCeEEEEECCCC-ceEEEeeecCCCeEEEEEcCC-CcEEEEEeCCCeEEEEECCCCc--EEEee
Q 001462 148 IRFTPDG-RWVVSGGFDNVVKVWDLTAG-KLLHDFKFHEGHIRSIDFHPL-EFLLATGSADRTVKFWDLETFE--LIGST 222 (1074)
Q Consensus 148 LafSPdG-~~LaSgs~DGsI~VWDl~tg-k~v~~~~~h~g~ItsLafSPd-g~lLaTGS~DGtI~IWDl~tg~--~i~t~ 222 (1074)
++|.|.. ..++++..||.|+-+|++.. +++++++.|.+.|.+|++++. -.+|++++.|+.+++|++..-. .+...
T Consensus 335 v~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~ 414 (463)
T KOG0270|consen 335 VAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEH 414 (463)
T ss_pred EEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccc
Confidence 9999954 46788889999999999875 899999999999999999985 4688999999999999987433 22222
Q ss_pred CCCCCCeEEEEEecCCCEEE-EEE-CCcEEEEEecCCe
Q 001462 223 RPEVTGVHAITFHPDGRTLF-SGF-DDNLKVYSWEPVI 258 (1074)
Q Consensus 223 ~~~~~~ItsIafSPDG~~La-sGs-d~~I~Vwd~~s~~ 258 (1074)
.-.-+...|+++.|+-.+++ .|+ .+.++|||+....
T Consensus 415 ~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~ 452 (463)
T KOG0270|consen 415 SFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNS 452 (463)
T ss_pred cccccceeecccCCCcceEEEecCccceEEEeecccCh
Confidence 22223467778888755444 344 4459999987654
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.5e-16 Score=172.67 Aligned_cols=283 Identities=18% Similarity=0.259 Sum_probs=205.9
Q ss_pred eEEEEEcCCCCEEEEEEcCCeEEEEEcCCC------------eeEEEEe-CCCCCeEEEEEc-------CCCCEEEEEEC
Q 001462 61 VDSVAFDSAEVLVLAGASTGVIKLWDLEES------------KMVRTLT-GHKSNCTAVEFH-------PFGEFFASGCM 120 (1074)
Q Consensus 61 ItsLafSpdg~~LatGs~DG~I~VWDl~tg------------k~i~tl~-~h~~~VtsLafS-------Pdg~~LaSgS~ 120 (1074)
...+.|+|||..|++-+.|..+.+|++... +....+. .....|+..+|- |+..++++.+.
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr 131 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSR 131 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccc
Confidence 456899999999999999999999987421 0111111 245668888886 56678999999
Q ss_pred CCeEEEEECCCCeEEEEEeC--CC---CCeEEEEEcCCCCEEEEEECCCeEEEEEC-CCCceE--EEe-----eecCCCe
Q 001462 121 DTNLKIWDIRKKGCIHTYKG--HT---RGINTIRFTPDGRWVVSGGFDNVVKVWDL-TAGKLL--HDF-----KFHEGHI 187 (1074)
Q Consensus 121 DGsI~IWDi~tg~~v~~l~~--h~---~~VtsLafSPdG~~LaSgs~DGsI~VWDl-~tgk~v--~~~-----~~h~g~I 187 (1074)
+.-|++||.-+|+....+.+ |. ....+++|+|||.+|++|. ...|++||+ +.|... ... .+..+-|
T Consensus 132 ~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~~~k~gq~gii 210 (406)
T KOG2919|consen 132 DQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGII 210 (406)
T ss_pred cCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCcchhhhhccccccccee
Confidence 99999999999988776653 22 2457999999999998765 789999999 555422 111 1346779
Q ss_pred EEEEEcCCC-cEEEEEeCCCeEEEEECCCCcEEEeeCCCCCCeEEEEEecCCCEEEEEE--CCcEEEEEecCCee-eecc
Q 001462 188 RSIDFHPLE-FLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGF--DDNLKVYSWEPVIC-HDSV 263 (1074)
Q Consensus 188 tsLafSPdg-~lLaTGS~DGtI~IWDl~tg~~i~t~~~~~~~ItsIafSPDG~~LasGs--d~~I~Vwd~~s~~~-~~~l 263 (1074)
.+++|+|.. ..+++|+....+-||.-....++..+.+|.++|+.++|.++|..|++|. ++.|..||++.... +-.+
T Consensus 211 sc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L 290 (406)
T KOG2919|consen 211 SCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYAL 290 (406)
T ss_pred eeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhh
Confidence 999999964 5999999999999999999999999999999999999999999999985 56799999975432 2122
Q ss_pred ccCC--ceeeEEE--ecCCCEEEEEECCCeEEEEEcCCCceeeeecCCCCCCCCceeEEEEcCCCCcceeEEEEEeccCc
Q 001462 264 DMGW--STLGDLC--INDGKLLGCSFYRNSVGIWVADVSHVEPYGVGAPEPDQSICTEVKFNPPGSHSLEKVGIIGRSTS 339 (1074)
Q Consensus 264 ~~~~--s~~~~l~--spDGklLAsgs~DGsV~IWDld~~~l~~~~~~~~~~~~~~ItsVaFSPDGs~~Lv~vlavG~stG 339 (1074)
..+. .....+| -++|++|++|+.||.|++||++.--..... ...+...++.|+++|-= -...++.|
T Consensus 291 ~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv---~~~~sd~vNgvslnP~m-------pilatssG 360 (406)
T KOG2919|consen 291 ERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSV---TGNYSDTVNGVSLNPIM-------PILATSSG 360 (406)
T ss_pred hhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccc---cccccccccceecCccc-------ceeeeccC
Confidence 1111 1122222 389999999999999999998642111221 14678899999999952 22334556
Q ss_pred ceEEeecCCcccceE
Q 001462 340 GFRSTSPDYETKDIK 354 (1074)
Q Consensus 340 ~~r~ivpD~et~eI~ 354 (1074)
..++..|+-..++..
T Consensus 361 qr~f~~~~dD~ge~~ 375 (406)
T KOG2919|consen 361 QRIFKYPKDDNGELE 375 (406)
T ss_pred ceeecCCCccccccc
Confidence 556666664444333
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.74 E-value=3e-17 Score=185.09 Aligned_cols=218 Identities=16% Similarity=0.329 Sum_probs=185.6
Q ss_pred EEEEEecCCCcEEEEEECCCeEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeeEEEEeC
Q 001462 19 NCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTG 98 (1074)
Q Consensus 19 t~IafSPdg~~lLaTGs~DGtV~IWDl~t~k~l~sl~~hs~~ItsLafSpdg~~LatGs~DG~I~VWDl~tgk~i~tl~~ 98 (1074)
.|++..... .|+++||..+.|+|||+....+...+++|...|+++.|+.+..|||+++..|.|.|..+.++.....|..
T Consensus 83 ~Cv~~~s~S-~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~ 161 (673)
T KOG4378|consen 83 FCVACASQS-LYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTI 161 (673)
T ss_pred HHHhhhhcc-eeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceec
Confidence 444444443 7899999999999999997777788999999999999999999999999999999999999888777775
Q ss_pred C-CCCeEEEEEcCCCCE-EEEEECCCeEEEEECCCCeEEEEE-eCCCCCeEEEEEcC-CCCEEEEEECCCeEEEEECCCC
Q 001462 99 H-KSNCTAVEFHPFGEF-FASGCMDTNLKIWDIRKKGCIHTY-KGHTRGINTIRFTP-DGRWVVSGGFDNVVKVWDLTAG 174 (1074)
Q Consensus 99 h-~~~VtsLafSPdg~~-LaSgS~DGsI~IWDi~tg~~v~~l-~~h~~~VtsLafSP-dG~~LaSgs~DGsI~VWDl~tg 174 (1074)
. ...|..+.|++..++ |.+++.+|.|.+||+....+++.+ +.|..+...|||+| +..+|++.+.|..|.+||+...
T Consensus 162 ~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~ 241 (673)
T KOG4378|consen 162 DSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQ 241 (673)
T ss_pred CCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccc
Confidence 4 445679999998775 566788999999999877766554 56889999999999 4567889999999999999977
Q ss_pred ceEEEeeecCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCC-CcEEEeeCCCCCCeEEEEEecCC
Q 001462 175 KLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLET-FELIGSTRPEVTGVHAITFHPDG 238 (1074)
Q Consensus 175 k~v~~~~~h~g~ItsLafSPdg~lLaTGS~DGtI~IWDl~t-g~~i~t~~~~~~~ItsIafSPDG 238 (1074)
.....+. ...+...++|.++|.+|+.|...|.|..||++. ..++..+..|...|++++|-+.-
T Consensus 242 ~s~~~l~-y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 242 ASTDRLT-YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred cccceee-ecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence 7666665 466889999999999999999999999999985 45677888898899999998865
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=7.5e-17 Score=186.11 Aligned_cols=272 Identities=17% Similarity=0.267 Sum_probs=210.2
Q ss_pred CeEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeeEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEe
Q 001462 60 PVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYK 139 (1074)
Q Consensus 60 ~ItsLafSpdg~~LatGs~DG~I~VWDl~tgk~i~tl~~h~~~VtsLafSPdg~~LaSgS~DGsI~IWDi~tg~~v~~l~ 139 (1074)
.|+.++|-|||..|+.+.. ..+.+||..+|..+.++++|.+.|++++|+.||+.|++|+.|+.|.+|.-.-.. +..+
T Consensus 14 ci~d~afkPDGsqL~lAAg-~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG-~LkY- 90 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAG-SRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEG-ILKY- 90 (1081)
T ss_pred chheeEECCCCceEEEecC-CEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccc-eeee-
Confidence 7899999999998888764 469999999999999999999999999999999999999999999999854333 2333
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeeecCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCCcEE
Q 001462 140 GHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELI 219 (1074)
Q Consensus 140 ~h~~~VtsLafSPdG~~LaSgs~DGsI~VWDl~tgk~v~~~~~h~g~ItsLafSPdg~lLaTGS~DGtI~IWDl~tg~~i 219 (1074)
.|.+.|.|+.|+|-...|++++.+ ..-+|...... +...+ ....+.+++|..||.+|+.|..||+|.+-+-. ++..
T Consensus 91 SH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~-V~K~k-ss~R~~~CsWtnDGqylalG~~nGTIsiRNk~-gEek 166 (1081)
T KOG1538|consen 91 SHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKS-VSKHK-SSSRIICCSWTNDGQYLALGMFNGTISIRNKN-GEEK 166 (1081)
T ss_pred ccCCeeeEeecCchHHHhhhcchh-hccccChhhhh-HHhhh-hheeEEEeeecCCCcEEEEeccCceEEeecCC-CCcc
Confidence 388999999999988889888754 45688865433 22222 24568899999999999999999999998644 4443
Q ss_pred EeeC---CCCCCeEEEEEecCCC-----EEEE-EECCcEEEEEecCCeeeeccccCCceeeEEEecCCCEEEEEECCCeE
Q 001462 220 GSTR---PEVTGVHAITFHPDGR-----TLFS-GFDDNLKVYSWEPVICHDSVDMGWSTLGDLCINDGKLLGCSFYRNSV 290 (1074)
Q Consensus 220 ~t~~---~~~~~ItsIafSPDG~-----~Las-Gsd~~I~Vwd~~s~~~~~~l~~~~s~~~~l~spDGklLAsgs~DGsV 290 (1074)
..+. +...+|.+++|+|... .+++ -...++.+|.++.......-...+.+.+..++++|.|+..|+.|+.+
T Consensus 167 ~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L 246 (1081)
T KOG1538|consen 167 VKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQL 246 (1081)
T ss_pred eEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceeecccccCCCCchhheeccCCcEEEEccCCCce
Confidence 3333 3567899999999632 3333 23445555555554444455667788888899999999999999999
Q ss_pred EEEEcCCCceeeeecCCCCCCCCceeEEEEcCCCCcceeEEEEEeccCcceEEeecCC
Q 001462 291 GIWVADVSHVEPYGVGAPEPDQSICTEVKFNPPGSHSLEKVGIIGRSTSGFRSTSPDY 348 (1074)
Q Consensus 291 ~IWDld~~~l~~~~~~~~~~~~~~ItsVaFSPDGs~~Lv~vlavG~stG~~r~ivpD~ 348 (1074)
++|.-++-.+.... .....|..|+..|++. ..++|+..|.+..+-.-+
T Consensus 247 ~~fTR~GvrLGTvg-----~~D~WIWtV~~~PNsQ-----~v~~GCqDGTiACyNl~f 294 (1081)
T KOG1538|consen 247 SLFTRDGVRLGTVG-----EQDSWIWTVQAKPNSQ-----YVVVGCQDGTIACYNLIF 294 (1081)
T ss_pred EEEeecCeEEeecc-----ccceeEEEEEEccCCc-----eEEEEEccCeeehhhhHH
Confidence 99976654444443 3567899999999999 788899998766665443
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.1e-16 Score=177.43 Aligned_cols=239 Identities=16% Similarity=0.261 Sum_probs=181.4
Q ss_pred CCeEEEEEcC-------CCCEEEEEEcCCeEEEEEcCCCe---eEE------------------EEeCCCCCeEEEEEcC
Q 001462 59 SPVDSVAFDS-------AEVLVLAGASTGVIKLWDLEESK---MVR------------------TLTGHKSNCTAVEFHP 110 (1074)
Q Consensus 59 ~~ItsLafSp-------dg~~LatGs~DG~I~VWDl~tgk---~i~------------------tl~~h~~~VtsLafSP 110 (1074)
....|++|.. .|+|+|+|+.|..|.|||+.--. +.. .-.+|...|.++.|+.
T Consensus 174 afPLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~ 253 (463)
T KOG0270|consen 174 AFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNR 253 (463)
T ss_pred CcchhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhcc
Confidence 3446777753 36899999999999999985211 001 1235778888999987
Q ss_pred CC-CEEEEEECCCeEEEEECCCCeEEEEEeCCCCCeEEEEEcC-CCCEEEEEECCCeEEEEECCCCce-EEEeeecCCCe
Q 001462 111 FG-EFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTP-DGRWVVSGGFDNVVKVWDLTAGKL-LHDFKFHEGHI 187 (1074)
Q Consensus 111 dg-~~LaSgS~DGsI~IWDi~tg~~v~~l~~h~~~VtsLafSP-dG~~LaSgs~DGsI~VWDl~tgk~-v~~~~~h~g~I 187 (1074)
.- +.||+|+.|.+|++||+.++++...+..|.+.|.++.|+| ...+|++|+.|+++.++|.+.... -..++ ..+.|
T Consensus 254 ~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk-~~g~V 332 (463)
T KOG0270|consen 254 NFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWK-FDGEV 332 (463)
T ss_pred ccceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEE-eccce
Confidence 54 5789999999999999999999999999999999999999 456899999999999999985322 22333 46789
Q ss_pred EEEEEcCCC-cEEEEEeCCCeEEEEECCCC-cEEEeeCCCCCCeEEEEEecCCCEEEE--EECCcEEEEEecCCeeeec-
Q 001462 188 RSIDFHPLE-FLLATGSADRTVKFWDLETF-ELIGSTRPEVTGVHAITFHPDGRTLFS--GFDDNLKVYSWEPVICHDS- 262 (1074)
Q Consensus 188 tsLafSPdg-~lLaTGS~DGtI~IWDl~tg-~~i~t~~~~~~~ItsIafSPDG~~Las--Gsd~~I~Vwd~~s~~~~~~- 262 (1074)
-.++|.|.. ..++++..||+|+-+|++.. +++.++..|.++|.+++++..-..+.+ +.++.+++|++........
T Consensus 333 Ekv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~ 412 (463)
T KOG0270|consen 333 EKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVK 412 (463)
T ss_pred EEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccc
Confidence 999999965 56777789999999999974 899999999999999999987655444 4677899999976444222
Q ss_pred ---cccCCceeeEEEec-CCCEEEEEECCCeEEEEEcCCCc
Q 001462 263 ---VDMGWSTLGDLCIN-DGKLLGCSFYRNSVGIWVADVSH 299 (1074)
Q Consensus 263 ---l~~~~s~~~~l~sp-DGklLAsgs~DGsV~IWDld~~~ 299 (1074)
+.++. ..+..+-+ ...+++.|+..+.++|||+-...
T Consensus 413 ~~~~~~~r-l~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~ 452 (463)
T KOG0270|consen 413 EHSFKLGR-LHCFALDPDVAFTLAFGGEKAVLRVWDIFTNS 452 (463)
T ss_pred cccccccc-eeecccCCCcceEEEecCccceEEEeecccCh
Confidence 22222 11111113 44678889889999999985443
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.9e-16 Score=174.62 Aligned_cols=201 Identities=22% Similarity=0.446 Sum_probs=161.2
Q ss_pred CCCCCeEEEEEcC--CCCEEEEEEcCCeEEEEEcCC----------------CeeEEEEeCCCCCeEEEEEcCCCC-EEE
Q 001462 56 GLSSPVDSVAFDS--AEVLVLAGASTGVIKLWDLEE----------------SKMVRTLTGHKSNCTAVEFHPFGE-FFA 116 (1074)
Q Consensus 56 ~hs~~ItsLafSp--dg~~LatGs~DG~I~VWDl~t----------------gk~i~tl~~h~~~VtsLafSPdg~-~La 116 (1074)
.|.+.+..+.-.+ +..+.++-+..|.|.||++.. .+++.++.+|...-+.++|+|-.. .|+
T Consensus 149 ~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~Ll 228 (440)
T KOG0302|consen 149 PHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLL 228 (440)
T ss_pred ccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccc
Confidence 4556666666555 445667777889999999842 246778889999999999999432 477
Q ss_pred EEECCCeEEEEECCCCeEE---EEEeCCCCCeEEEEEcCCC-CEEEEEECCCeEEEEECCCCce--EEEeeecCCCeEEE
Q 001462 117 SGCMDTNLKIWDIRKKGCI---HTYKGHTRGINTIRFTPDG-RWVVSGGFDNVVKVWDLTAGKL--LHDFKFHEGHIRSI 190 (1074)
Q Consensus 117 SgS~DGsI~IWDi~tg~~v---~~l~~h~~~VtsLafSPdG-~~LaSgs~DGsI~VWDl~tgk~--v~~~~~h~g~ItsL 190 (1074)
+|.--+.|++|...++.-. ..+.+|...|-.|+|+|.. ..|++|+.||.|+|||++.+.. ....+.|.+.|+.|
T Consensus 229 sGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVI 308 (440)
T KOG0302|consen 229 SGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVI 308 (440)
T ss_pred cCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeE
Confidence 8777788999998876532 3356799999999999954 4789999999999999998832 22337899999999
Q ss_pred EEcCCCcEEEEEeCCCeEEEEECCC---CcEEEeeCCCCCCeEEEEEecC--CCEEEEEECCcEEEEEecC
Q 001462 191 DFHPLEFLLATGSADRTVKFWDLET---FELIGSTRPEVTGVHAITFHPD--GRTLFSGFDDNLKVYSWEP 256 (1074)
Q Consensus 191 afSPdg~lLaTGS~DGtI~IWDl~t---g~~i~t~~~~~~~ItsIafSPD--G~~LasGsd~~I~Vwd~~s 256 (1074)
.|+.+..+|++|+.||+++|||++. ++++..+..|..+|++|.|+|. +.++++|.|+.|.|||+..
T Consensus 309 SWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsv 379 (440)
T KOG0302|consen 309 SWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSV 379 (440)
T ss_pred EccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeec
Confidence 9999888999999999999999985 5678899999999999999985 3444557889999999863
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.73 E-value=3e-17 Score=200.48 Aligned_cols=243 Identities=22% Similarity=0.372 Sum_probs=197.8
Q ss_pred CCEEEEEEecCCCc---EEEEEECCCeEEEEECCC---C---ceEEEeeCCCCCeEEEEEcCCC-CEEEEEEcCCeEEEE
Q 001462 16 ANVNCISIGKKACR---FLITGGDDQKVNLWAIGK---P---TALMSLCGLSSPVDSVAFDSAE-VLVLAGASTGVIKLW 85 (1074)
Q Consensus 16 ~~Vt~IafSPdg~~---lLaTGs~DGtV~IWDl~t---~---k~l~sl~~hs~~ItsLafSpdg-~~LatGs~DG~I~VW 85 (1074)
..-++++|.+.|.. +|+.|..||.|.+||... + ..+.....|.+.|..+.|++.+ ++|++|+.||.|.||
T Consensus 65 ~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iW 144 (1049)
T KOG0307|consen 65 NRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIW 144 (1049)
T ss_pred ccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEe
Confidence 46789999998865 699999999999999754 2 3345667899999999999955 599999999999999
Q ss_pred EcCCCeeEEEE--eCCCCCeEEEEEcCCC-CEEEEEECCCeEEEEECCCCeEEEEEeCCCC--CeEEEEEcCCCC-EEEE
Q 001462 86 DLEESKMVRTL--TGHKSNCTAVEFHPFG-EFFASGCMDTNLKIWDIRKKGCIHTYKGHTR--GINTIRFTPDGR-WVVS 159 (1074)
Q Consensus 86 Dl~tgk~i~tl--~~h~~~VtsLafSPdg-~~LaSgS~DGsI~IWDi~tg~~v~~l~~h~~--~VtsLafSPdG~-~LaS 159 (1074)
|+..-+.-..+ ....+.|.+++|+..- ..|++++.+|.+.|||++..+.+..+..+.. .+..++|+|++. .|++
T Consensus 145 Dlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~ 224 (1049)
T KOG0307|consen 145 DLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLV 224 (1049)
T ss_pred ccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeee
Confidence 99875433333 1245789999998754 5788888899999999999887777765443 478999999764 4555
Q ss_pred EECCC---eEEEEECCCC-ceEEEeeecCCCeEEEEEcCCC-cEEEEEeCCCeEEEEECCCCcEEEeeCCCCCCeEEEEE
Q 001462 160 GGFDN---VVKVWDLTAG-KLLHDFKFHEGHIRSIDFHPLE-FLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITF 234 (1074)
Q Consensus 160 gs~DG---sI~VWDl~tg-k~v~~~~~h~g~ItsLafSPdg-~lLaTGS~DGtI~IWDl~tg~~i~t~~~~~~~ItsIaf 234 (1074)
++.|. .|.+||++.- ..++.+.+|...|.++.|++.+ .+|++++.|+.|.+|+.++++.+..+.....++..+.|
T Consensus 225 As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w 304 (1049)
T KOG0307|consen 225 ASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQW 304 (1049)
T ss_pred ecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeee
Confidence 55443 7999999864 4677888999999999999966 89999999999999999999999999988889999999
Q ss_pred ecCCCEE-EE-EECCcEEEEEecCCe
Q 001462 235 HPDGRTL-FS-GFDDNLKVYSWEPVI 258 (1074)
Q Consensus 235 SPDG~~L-as-Gsd~~I~Vwd~~s~~ 258 (1074)
+|..--+ ++ ..+|.|.||.+....
T Consensus 305 ~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 305 CPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred cCCCcchhhhheeccceeeeeeecCC
Confidence 9987633 33 578999999987644
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.73 E-value=8.3e-16 Score=166.29 Aligned_cols=243 Identities=17% Similarity=0.299 Sum_probs=184.5
Q ss_pred eCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCC----eeEEEEeCCCCCeEEEEEcC--CCCEEEEEECCCeEEEEE
Q 001462 55 CGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEES----KMVRTLTGHKSNCTAVEFHP--FGEFFASGCMDTNLKIWD 128 (1074)
Q Consensus 55 ~~hs~~ItsLafSpdg~~LatGs~DG~I~VWDl~tg----k~i~tl~~h~~~VtsLafSP--dg~~LaSgS~DGsI~IWD 128 (1074)
.+|..-|.++.|..-|+.+++|+.|++|+|||..+. .+....+.|.+.|..+.|.+ .|+.+|+++.|+++.||.
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE 89 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE 89 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence 467888999999999999999999999999997543 45667788999999999965 589999999999999997
Q ss_pred CC---------CCeEEEEEeCCCCCeEEEEEcC--CCCEEEEEECCCeEEEEECCC------CceEEEee-------ecC
Q 001462 129 IR---------KKGCIHTYKGHTRGINTIRFTP--DGRWVVSGGFDNVVKVWDLTA------GKLLHDFK-------FHE 184 (1074)
Q Consensus 129 i~---------tg~~v~~l~~h~~~VtsLafSP--dG~~LaSgs~DGsI~VWDl~t------gk~v~~~~-------~h~ 184 (1074)
-. .......+......|+.++|.| -|-.|++++.||.|+||+... ..+..++. .+.
T Consensus 90 E~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~ 169 (361)
T KOG2445|consen 90 EQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNK 169 (361)
T ss_pred ecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCccccc
Confidence 42 1123445556677899999999 466899999999999998654 23333443 356
Q ss_pred CCeEEEEEcCC---CcEEEEEeCC-----CeEEEEECCC----CcEEEeeCCCCCCeEEEEEecC----CCEEEEEECCc
Q 001462 185 GHIRSIDFHPL---EFLLATGSAD-----RTVKFWDLET----FELIGSTRPEVTGVHAITFHPD----GRTLFSGFDDN 248 (1074)
Q Consensus 185 g~ItsLafSPd---g~lLaTGS~D-----GtI~IWDl~t----g~~i~t~~~~~~~ItsIafSPD----G~~LasGsd~~ 248 (1074)
....|+.|+|. ..+|++|+.+ +.++||.... ...+.++..+..+|++|+|.|. -..|++++.++
T Consensus 170 ~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg 249 (361)
T KOG2445|consen 170 QPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG 249 (361)
T ss_pred CcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc
Confidence 67899999984 4688888765 4788887654 3345667789999999999996 24667777777
Q ss_pred EEEEEecCCe--------------------eeeccccCC-ceeeEEEecCCCEEEEEECCCeEEEEEcCC
Q 001462 249 LKVYSWEPVI--------------------CHDSVDMGW-STLGDLCINDGKLLGCSFYRNSVGIWVADV 297 (1074)
Q Consensus 249 I~Vwd~~s~~--------------------~~~~l~~~~-s~~~~l~spDGklLAsgs~DGsV~IWDld~ 297 (1074)
|+||.+.... .+..+..+. .+..+.+.-.|..|++.+.||.|++|....
T Consensus 250 v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany 319 (361)
T KOG2445|consen 250 VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANY 319 (361)
T ss_pred EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhhh
Confidence 9999987421 112223333 344444445788999999999999997643
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.9e-16 Score=170.97 Aligned_cols=282 Identities=18% Similarity=0.343 Sum_probs=211.5
Q ss_pred EecCCCCEEEEEEec----CCCcEEEEEECCCeEEEEECCCCc---eEEEee--CCCCCeEEEEEcCC----CCEEEEEE
Q 001462 11 FVAHSANVNCISIGK----KACRFLITGGDDQKVNLWAIGKPT---ALMSLC--GLSSPVDSVAFDSA----EVLVLAGA 77 (1074)
Q Consensus 11 L~gHs~~Vt~IafSP----dg~~lLaTGs~DGtV~IWDl~t~k---~l~sl~--~hs~~ItsLafSpd----g~~LatGs 77 (1074)
...|..+|..++|.+ +....+++.|. ..+.||...... .++.+. .|....+.++|+-+ ..+|++||
T Consensus 34 ~ed~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G 112 (385)
T KOG1034|consen 34 KEDHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGG 112 (385)
T ss_pred hccCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeec
Confidence 357889999999984 33456777765 478888874432 333332 36677888888753 34889999
Q ss_pred cCCeEEEEEcCCCeeEEEEeCCCCCeEEEEEcCCC-CEEEEEECCCeEEEEECCCCeEEEEE---eCCCCCeEEEEEcCC
Q 001462 78 STGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFG-EFFASGCMDTNLKIWDIRKKGCIHTY---KGHTRGINTIRFTPD 153 (1074)
Q Consensus 78 ~DG~I~VWDl~tgk~i~tl~~h~~~VtsLafSPdg-~~LaSgS~DGsI~IWDi~tg~~v~~l---~~h~~~VtsLafSPd 153 (1074)
.-|.|+|.|+.+++....+.+|...|..+.|+|+. +++++++.|..|++|++++..++..+ .+|.+.|.++.|+++
T Consensus 113 ~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~ 192 (385)
T KOG1034|consen 113 YLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLD 192 (385)
T ss_pred ceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCC
Confidence 99999999999999999999999999999999975 68999999999999999999998877 568999999999999
Q ss_pred CCEEEEEECCCeEEEEECCCCceEE----------------------------EeeecCCCeEEEEEcCCCcEEEEEeCC
Q 001462 154 GRWVVSGGFDNVVKVWDLTAGKLLH----------------------------DFKFHEGHIRSIDFHPLEFLLATGSAD 205 (1074)
Q Consensus 154 G~~LaSgs~DGsI~VWDl~tgk~v~----------------------------~~~~h~g~ItsLafSPdg~lLaTGS~D 205 (1074)
|.+|++++.|..|++|++...+... +-..|...|-|+.|- |+++++-+-+
T Consensus 193 gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSksce 270 (385)
T KOG1034|consen 193 GDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSKSCE 270 (385)
T ss_pred CCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hhheeecccC
Confidence 9999999999999999997321100 111244555555554 6888888889
Q ss_pred CeEEEEECC-CCc-------------EEEeeCCCCCCeEEE--EEecCCCEEEEEE-CCcEEEEEecCCeeeecc-----
Q 001462 206 RTVKFWDLE-TFE-------------LIGSTRPEVTGVHAI--TFHPDGRTLFSGF-DDNLKVYSWEPVICHDSV----- 263 (1074)
Q Consensus 206 GtI~IWDl~-tg~-------------~i~t~~~~~~~ItsI--afSPDG~~LasGs-d~~I~Vwd~~s~~~~~~l----- 263 (1074)
+.|..|..- -.+ .+..+......|+-+ +|.+-++.|+.|. .+.+++||++........
T Consensus 271 naI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s 350 (385)
T KOG1034|consen 271 NAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHS 350 (385)
T ss_pred ceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEec
Confidence 999999872 111 123333334445555 4566688999874 566999999876553221
Q ss_pred ccCCceeeEEEecCCCEEEEEECCCeEEEEEc
Q 001462 264 DMGWSTLGDLCINDGKLLGCSFYRNSVGIWVA 295 (1074)
Q Consensus 264 ~~~~s~~~~l~spDGklLAsgs~DGsV~IWDl 295 (1074)
..+..+....++.||.+|+....|+.|--||.
T Consensus 351 ~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 351 KSGSTVRQTSFSRDGSILVLVCDDGTVWRWDR 382 (385)
T ss_pred cccceeeeeeecccCcEEEEEeCCCcEEEEEe
Confidence 22234455567789999999999999988874
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.5e-15 Score=180.05 Aligned_cols=340 Identities=17% Similarity=0.185 Sum_probs=249.5
Q ss_pred ccCceEEEEecCCCCEEEEEEecCCC--cEEEEEECCCeEEEEECCCCceEEEee-------------------------
Q 001462 3 KRGYKLQEFVAHSANVNCISIGKKAC--RFLITGGDDQKVNLWAIGKPTALMSLC------------------------- 55 (1074)
Q Consensus 3 ktG~~v~~L~gHs~~Vt~IafSPdg~--~lLaTGs~DGtV~IWDl~t~k~l~sl~------------------------- 55 (1074)
.+|.++..+.+|..++..+.+.|... .++++++.||.|++||...+..+..+.
T Consensus 45 ~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~ 124 (792)
T KOG1963|consen 45 ATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNLPVHALVYKPAQADISANVYVSV 124 (792)
T ss_pred chHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCCceeEEEechhHhCccceeEeec
Confidence 47888899999999999999998776 577899999999999875432221110
Q ss_pred ------------------------------------------------------------------------------CC
Q 001462 56 ------------------------------------------------------------------------------GL 57 (1074)
Q Consensus 56 ------------------------------------------------------------------------------~h 57 (1074)
.|
T Consensus 125 ~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~H 204 (792)
T KOG1963|consen 125 EDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKGIVHMCKIHIYFVPKHTKHTSSRDITVHH 204 (792)
T ss_pred ccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEEEEEEeeeEEEEEecccceeeccchhhhhh
Confidence 12
Q ss_pred CCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCC----CeeEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCe
Q 001462 58 SSPVDSVAFDSAEVLVLAGASTGVIKLWDLEE----SKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKG 133 (1074)
Q Consensus 58 s~~ItsLafSpdg~~LatGs~DG~I~VWDl~t----gk~i~tl~~h~~~VtsLafSPdg~~LaSgS~DGsI~IWDi~tg~ 133 (1074)
...++|.++||+++++++|..||.|.+|.--. ......+..|...|.++.|+++|.+|++|+..|.+.+|.+.+++
T Consensus 205 tf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~ 284 (792)
T KOG1963|consen 205 TFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK 284 (792)
T ss_pred cccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCC
Confidence 33367889999999999999999999995322 22356677899999999999999999999999999999999988
Q ss_pred EEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeee-----------cCCCeEEEEEcCCCcEEEEE
Q 001462 134 CIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKF-----------HEGHIRSIDFHPLEFLLATG 202 (1074)
Q Consensus 134 ~v~~l~~h~~~VtsLafSPdG~~LaSgs~DGsI~VWDl~tgk~v~~~~~-----------h~g~ItsLafSPdg~lLaTG 202 (1074)
.+-+..-..+|..+.++||+.+.+....|..|.+....+......+.+ ..+-.+.++++|.-+.++..
T Consensus 285 -kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln 363 (792)
T KOG1963|consen 285 -KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLN 363 (792)
T ss_pred -cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeec
Confidence 555566778999999999999999999999999998866554443332 13346778899977778888
Q ss_pred eCCCeEEEEECCCCcEEEeeCC-----C------CCCeEEEEEecCCCEEEEEE---------CC--cEEEEEecCCee-
Q 001462 203 SADRTVKFWDLETFELIGSTRP-----E------VTGVHAITFHPDGRTLFSGF---------DD--NLKVYSWEPVIC- 259 (1074)
Q Consensus 203 S~DGtI~IWDl~tg~~i~t~~~-----~------~~~ItsIafSPDG~~LasGs---------d~--~I~Vwd~~s~~~- 259 (1074)
+..|.|.+||+-+.+.+..+.. + .-+++.++.+..|.+++++. ++ .+++|..+....
T Consensus 364 ~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt 443 (792)
T KOG1963|consen 364 GHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKT 443 (792)
T ss_pred CCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcce
Confidence 8899999999988766544321 1 12477888888899999852 11 388898875432
Q ss_pred ---eeccccCCc--eeeEE-EecCC-CEEEEEECCCeEEEEEc------CCCceeeeecCCCCCCCCceeEEEEcCCCCc
Q 001462 260 ---HDSVDMGWS--TLGDL-CINDG-KLLGCSFYRNSVGIWVA------DVSHVEPYGVGAPEPDQSICTEVKFNPPGSH 326 (1074)
Q Consensus 260 ---~~~l~~~~s--~~~~l-~spDG-klLAsgs~DGsV~IWDl------d~~~l~~~~~~~~~~~~~~ItsVaFSPDGs~ 326 (1074)
...+..++. ..... +.+.. ...++++.||.++||-+ ......+........|..+++.++|+.||+
T Consensus 444 ~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGs- 522 (792)
T KOG1963|consen 444 FILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGS- 522 (792)
T ss_pred eEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCCCc-
Confidence 222222222 22222 22322 37888999999999987 222223333222234788999999999998
Q ss_pred ceeEEEEEeccCcceEEeecCCccc
Q 001462 327 SLEKVGIIGRSTSGFRSTSPDYETK 351 (1074)
Q Consensus 327 ~Lv~vlavG~stG~~r~ivpD~et~ 351 (1074)
+++.+..+- +.+.||.+.
T Consensus 523 ----lla~s~~~~---Itiwd~~~~ 540 (792)
T KOG1963|consen 523 ----LLAVSFDDT---ITIWDYDTK 540 (792)
T ss_pred ----EEEEecCCE---EEEecCCCh
Confidence 888888875 666776663
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.6e-16 Score=180.94 Aligned_cols=126 Identities=22% Similarity=0.418 Sum_probs=107.1
Q ss_pred ceEEEEecCCCCEEEEEEecCCCcEEEEEECCCeEEEEECCCCc--eE----EEeeCCCCCeEEEEEcCCCCEEEEEEcC
Q 001462 6 YKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPT--AL----MSLCGLSSPVDSVAFDSAEVLVLAGAST 79 (1074)
Q Consensus 6 ~~v~~L~gHs~~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~k--~l----~sl~~hs~~ItsLafSpdg~~LatGs~D 79 (1074)
..+..+.+|.+.|+.+.|+|-...+||+|+.|..|+||.+..+- .+ ..+.+....+.|+.|+|...-|+..+..
T Consensus 70 r~i~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDgil~s~a~ 149 (1012)
T KOG1445|consen 70 RDIGILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADGILASGAH 149 (1012)
T ss_pred cccceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCceEEeccC
Confidence 35667899999999999999877899999999999999996432 11 1223334578899999976656666678
Q ss_pred CeEEEEEcCCCeeEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC
Q 001462 80 GVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRK 131 (1074)
Q Consensus 80 G~I~VWDl~tgk~i~tl~~h~~~VtsLafSPdg~~LaSgS~DGsI~IWDi~t 131 (1074)
|.++|||+.+++.+..+.+|.+.|.++.|+.||..+++++.|..|+|||.+.
T Consensus 150 g~v~i~D~stqk~~~el~~h~d~vQSa~WseDG~llatscKdkqirifDPRa 201 (1012)
T KOG1445|consen 150 GSVYITDISTQKTAVELSGHTDKVQSADWSEDGKLLATSCKDKQIRIFDPRA 201 (1012)
T ss_pred ceEEEEEcccCceeecccCCchhhhccccccCCceEeeecCCcceEEeCCcc
Confidence 9999999999999999999999999999999999999999999999999864
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.72 E-value=2e-17 Score=202.03 Aligned_cols=280 Identities=18% Similarity=0.312 Sum_probs=209.0
Q ss_pred EEEEEecCCCcEEEEEE----------CCCeEEEEECC--CCc----eEEEeeCCCCCeEEEEEcCCCCE----EEEEEc
Q 001462 19 NCISIGKKACRFLITGG----------DDQKVNLWAIG--KPT----ALMSLCGLSSPVDSVAFDSAEVL----VLAGAS 78 (1074)
Q Consensus 19 t~IafSPdg~~lLaTGs----------~DGtV~IWDl~--t~k----~l~sl~~hs~~ItsLafSpdg~~----LatGs~ 78 (1074)
..++|+|.+..++++|. .+.++-||.+. +.. ....+. .....+.++|.+.|.. |+.|+.
T Consensus 10 a~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~-s~~rF~kL~W~~~g~~~~GlIaGG~e 88 (1049)
T KOG0307|consen 10 ATFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQ-SSNRFNKLAWGSYGSHSHGLIAGGLE 88 (1049)
T ss_pred ceEEecCCCchhhHHHhhhhccccccccccccceeeecccCcccccccccccc-ccccceeeeecccCCCccceeecccc
Confidence 45789999965777653 24556666542 222 222222 3456789999987765 888999
Q ss_pred CCeEEEEEcCC---C---eeEEEEeCCCCCeEEEEEcCCCC-EEEEEECCCeEEEEECCCCeEEEEE--eCCCCCeEEEE
Q 001462 79 TGVIKLWDLEE---S---KMVRTLTGHKSNCTAVEFHPFGE-FFASGCMDTNLKIWDIRKKGCIHTY--KGHTRGINTIR 149 (1074)
Q Consensus 79 DG~I~VWDl~t---g---k~i~tl~~h~~~VtsLafSPdg~-~LaSgS~DGsI~IWDi~tg~~v~~l--~~h~~~VtsLa 149 (1074)
||.|.+||... + ..+.+...|.+.|..+.|++... .|++|+.||.|.|||+..-+.-..+ ....+.|.+++
T Consensus 89 dG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~ls 168 (1049)
T KOG0307|consen 89 DGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLS 168 (1049)
T ss_pred CCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEec
Confidence 99999999865 2 24566778999999999999765 9999999999999999875433333 22456799999
Q ss_pred EcCC-CCEEEEEECCCeEEEEECCCCceEEEeeecCC--CeEEEEEcCCC-cEEEEEeCCC---eEEEEECCCC-cEEEe
Q 001462 150 FTPD-GRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEG--HIRSIDFHPLE-FLLATGSADR---TVKFWDLETF-ELIGS 221 (1074)
Q Consensus 150 fSPd-G~~LaSgs~DGsI~VWDl~tgk~v~~~~~h~g--~ItsLafSPdg-~lLaTGS~DG---tI~IWDl~tg-~~i~t 221 (1074)
|+.. ...|++++.+|.+.|||++..+.+..+..+.+ .+..+.|+|+. ..|++++.|. .|.+||++.. ..+..
T Consensus 169 WNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~ 248 (1049)
T KOG0307|consen 169 WNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKI 248 (1049)
T ss_pred cchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhh
Confidence 9874 45678899999999999999988877775554 47889999986 4556665543 6999999853 45677
Q ss_pred eCCCCCCeEEEEEecCC-CEEEE-EECCcEEEEEecCCeeeeccccCCceee-EEEec-CCCEEEEEECCCeEEEEEcCC
Q 001462 222 TRPEVTGVHAITFHPDG-RTLFS-GFDDNLKVYSWEPVICHDSVDMGWSTLG-DLCIN-DGKLLGCSFYRNSVGIWVADV 297 (1074)
Q Consensus 222 ~~~~~~~ItsIafSPDG-~~Las-Gsd~~I~Vwd~~s~~~~~~l~~~~s~~~-~l~sp-DGklLAsgs~DGsV~IWDld~ 297 (1074)
+..|..+|.++.|++.+ ++|++ |-|+.+.+|+.++++.+..+.....-+. ..|.+ +-..+++++.||.|.||.+.+
T Consensus 249 ~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~ 328 (1049)
T KOG0307|consen 249 LEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQG 328 (1049)
T ss_pred hcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeec
Confidence 78999999999999977 66665 6788899999999888887776433332 33334 556899999999999998854
Q ss_pred Cc
Q 001462 298 SH 299 (1074)
Q Consensus 298 ~~ 299 (1074)
..
T Consensus 329 ~~ 330 (1049)
T KOG0307|consen 329 TD 330 (1049)
T ss_pred CC
Confidence 43
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.1e-15 Score=172.32 Aligned_cols=283 Identities=16% Similarity=0.283 Sum_probs=208.7
Q ss_pred EEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeeEEEEeCCCCCeEEEEEcCCCC--EEEEEECCCeEEEEE
Q 001462 51 LMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGE--FFASGCMDTNLKIWD 128 (1074)
Q Consensus 51 l~sl~~hs~~ItsLafSpdg~~LatGs~DG~I~VWDl~tgk~i~tl~~h~~~VtsLafSPdg~--~LaSgS~DGsI~IWD 128 (1074)
...+.+|++.|.++...|.|.+|++|+.||+|+||.+.+|.+++.+. ..+.|.|++|+|.++ .||++- +..+.|.+
T Consensus 393 ~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~-~~~~~ivn 470 (733)
T KOG0650|consen 393 ALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAV-GECVLIVN 470 (733)
T ss_pred eeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEe-cCceEEeC
Confidence 44568999999999999999999999999999999999999999987 677899999999776 344443 22344443
Q ss_pred CCCC-------------------------------------eEEEEEeCCCCCeEEEEEcCCCCEEEEEECC---CeEEE
Q 001462 129 IRKK-------------------------------------GCIHTYKGHTRGINTIRFTPDGRWVVSGGFD---NVVKV 168 (1074)
Q Consensus 129 i~tg-------------------------------------~~v~~l~~h~~~VtsLafSPdG~~LaSgs~D---GsI~V 168 (1074)
..-| .-++..-.|...|..+.|+..|.||++..-+ ..|.|
T Consensus 471 p~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~Vli 550 (733)
T KOG0650|consen 471 PIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLI 550 (733)
T ss_pred ccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEE
Confidence 2111 0012223477789999999999999987653 47999
Q ss_pred EECCCCceEEEeeecCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCCcEEEeeCCCCCCeEEEEEecCCCEEEEE-ECC
Q 001462 169 WDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSG-FDD 247 (1074)
Q Consensus 169 WDl~tgk~v~~~~~h~g~ItsLafSPdg~lLaTGS~DGtI~IWDl~tg~~i~t~~~~~~~ItsIafSPDG~~LasG-sd~ 247 (1074)
+++.......-|....+.|.++.|+|...+|++++. ..|+|||+...+.++.+......|..++.+|.|..|++| .++
T Consensus 551 HQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~ 629 (733)
T KOG0650|consen 551 HQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDK 629 (733)
T ss_pred EecccccccCchhhcCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCC
Confidence 999888777777667788999999999999998875 689999999988888888888889999999999888886 566
Q ss_pred cEEEEEecCC-eeeeccccCCceeeE-EEecCCCEEEEEECCCeEEEEEc-------CCCceeeeecCCCCCCCCc----
Q 001462 248 NLKVYSWEPV-ICHDSVDMGWSTLGD-LCINDGKLLGCSFYRNSVGIWVA-------DVSHVEPYGVGAPEPDQSI---- 314 (1074)
Q Consensus 248 ~I~Vwd~~s~-~~~~~l~~~~s~~~~-l~spDGklLAsgs~DGsV~IWDl-------d~~~l~~~~~~~~~~~~~~---- 314 (1074)
.+..||++-. +....+..+...+.. .+.+.=.+|++|+.||.+.|+.- ....+.++... .+|...
T Consensus 630 k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L--~gH~~~~~~g 707 (733)
T KOG0650|consen 630 KMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRL--RGHEKTNDLG 707 (733)
T ss_pred eeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeec--cCceeecccc
Confidence 7888888754 233333333333333 33344567888888899998852 22334555432 455444
Q ss_pred eeEEEEcCCCCcceeEEEEEeccCcceEE
Q 001462 315 CTEVKFNPPGSHSLEKVGIIGRSTSGFRS 343 (1074)
Q Consensus 315 ItsVaFSPDGs~~Lv~vlavG~stG~~r~ 343 (1074)
|..+.|+|..- -++.....|.++.
T Consensus 708 VLd~~wHP~qp-----WLfsAGAd~tirl 731 (733)
T KOG0650|consen 708 VLDTIWHPRQP-----WLFSAGADGTIRL 731 (733)
T ss_pred eEeecccCCCc-----eEEecCCCceEEe
Confidence 88899999776 4444444444443
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.69 E-value=4.6e-15 Score=177.26 Aligned_cols=261 Identities=20% Similarity=0.225 Sum_probs=191.2
Q ss_pred CCeEEEEECCCCceEEEeeCCCCCeEEEEEcC-CCCEEEEEEcCCeEEEEEcCCCee--EE----EEeCCCCCeEEEEEc
Q 001462 37 DQKVNLWAIGKPTALMSLCGLSSPVDSVAFDS-AEVLVLAGASTGVIKLWDLEESKM--VR----TLTGHKSNCTAVEFH 109 (1074)
Q Consensus 37 DGtV~IWDl~t~k~l~sl~~hs~~ItsLafSp-dg~~LatGs~DG~I~VWDl~tgk~--i~----tl~~h~~~VtsLafS 109 (1074)
++.+.||++...............|.|++|+| +..+|+.|+.+|.|.+||+..+.. .. ....|..+|..+.|.
T Consensus 221 ~~~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~ 300 (555)
T KOG1587|consen 221 DGVLLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWL 300 (555)
T ss_pred CceEEEEecCCCCCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEe
Confidence 35799999977644444444678999999999 667888899999999999987654 22 223688999999997
Q ss_pred CCCC--EEEEEECCCeEEEEECCCCeE------EEEEe------CCCCCeEEEEEcC-CCCEEEEEECCCeEEEEECCC-
Q 001462 110 PFGE--FFASGCMDTNLKIWDIRKKGC------IHTYK------GHTRGINTIRFTP-DGRWVVSGGFDNVVKVWDLTA- 173 (1074)
Q Consensus 110 Pdg~--~LaSgS~DGsI~IWDi~tg~~------v~~l~------~h~~~VtsLafSP-dG~~LaSgs~DGsI~VWDl~t- 173 (1074)
.+.. -|++++.||.|..|+++.-.. ..... .....+++++|.+ +-..|++|+++|.|..-....
T Consensus 301 ~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~ 380 (555)
T KOG1587|consen 301 QNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGY 380 (555)
T ss_pred ccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCC
Confidence 6544 499999999999998764322 11111 1234688999988 556789999999988743322
Q ss_pred --C-----ceEEEeeecCCCeEEEEEcCCCcEEEEEeCCCeEEEEECC-CCcEEEeeCCCCCCeEEEEEecCCCEEEE-E
Q 001462 174 --G-----KLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLE-TFELIGSTRPEVTGVHAITFHPDGRTLFS-G 244 (1074)
Q Consensus 174 --g-----k~v~~~~~h~g~ItsLafSPdg~lLaTGS~DGtI~IWDl~-tg~~i~t~~~~~~~ItsIafSPDG~~Las-G 244 (1074)
+ +....+..|.++|+++.++|-+..++..+.|.+++||... ...++..+..+...+++++|||..-.+++ +
T Consensus 381 ~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~ 460 (555)
T KOG1587|consen 381 TPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATV 460 (555)
T ss_pred cccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEE
Confidence 2 1233566789999999999987665555559999999988 66777777777777999999998755554 4
Q ss_pred -ECCcEEEEEecCCee--eeccccCCceeeEEE-ecCCCEEEEEECCCeEEEEEcCC
Q 001462 245 -FDDNLKVYSWEPVIC--HDSVDMGWSTLGDLC-INDGKLLGCSFYRNSVGIWVADV 297 (1074)
Q Consensus 245 -sd~~I~Vwd~~s~~~--~~~l~~~~s~~~~l~-spDGklLAsgs~DGsV~IWDld~ 297 (1074)
.+|.+.+||+..... ..............+ .++|++|++|...|.+++|++..
T Consensus 461 d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 461 DGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred cCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 467799999875433 222333334444444 45699999999999999999853
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=4.3e-14 Score=160.02 Aligned_cols=285 Identities=14% Similarity=0.200 Sum_probs=185.8
Q ss_pred EEEEcCCeEEEEEcCC-Ce--eEEEEeCCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEECCC-CeE--EEEEeCCCCCeE
Q 001462 74 LAGASTGVIKLWDLEE-SK--MVRTLTGHKSNCTAVEFHPFGEFFASGC-MDTNLKIWDIRK-KGC--IHTYKGHTRGIN 146 (1074)
Q Consensus 74 atGs~DG~I~VWDl~t-gk--~i~tl~~h~~~VtsLafSPdg~~LaSgS-~DGsI~IWDi~t-g~~--v~~l~~h~~~Vt 146 (1074)
++...++.|.+||+.+ ++ .+..+. +.+....+.++|++++|++++ .++.|.+|++.. +.. +.... ......
T Consensus 6 ~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~ 83 (330)
T PRK11028 6 IASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPT 83 (330)
T ss_pred EEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCce
Confidence 3346689999999964 33 445554 345677899999999987775 478899999863 332 22222 233567
Q ss_pred EEEEcCCCCEEEEEEC-CCeEEEEECCC-Cc---eEEEeeecCCCeEEEEEcCCCcEEEEEe-CCCeEEEEECCCCcEEE
Q 001462 147 TIRFTPDGRWVVSGGF-DNVVKVWDLTA-GK---LLHDFKFHEGHIRSIDFHPLEFLLATGS-ADRTVKFWDLETFELIG 220 (1074)
Q Consensus 147 sLafSPdG~~LaSgs~-DGsI~VWDl~t-gk---~v~~~~~h~g~ItsLafSPdg~lLaTGS-~DGtI~IWDl~tg~~i~ 220 (1074)
.++|+|+|++|++++. ++.|.+|++.. +. .+..+. +.....+++++|+++++++++ .++.|.+||+.+...+.
T Consensus 84 ~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~ 162 (330)
T PRK11028 84 HISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLV 162 (330)
T ss_pred EEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCccc
Confidence 8999999998887764 88999999964 32 223232 233467889999998886655 56899999998633221
Q ss_pred e-----e-CCCCCCeEEEEEecCCCEEEEEE--CCcEEEEEecCC--e--eeecccc-------CCceeeEEEecCCCEE
Q 001462 221 S-----T-RPEVTGVHAITFHPDGRTLFSGF--DDNLKVYSWEPV--I--CHDSVDM-------GWSTLGDLCINDGKLL 281 (1074)
Q Consensus 221 t-----~-~~~~~~ItsIafSPDG~~LasGs--d~~I~Vwd~~s~--~--~~~~l~~-------~~s~~~~l~spDGklL 281 (1074)
. . .........++|+|+|+++++.. ++.|.+|+++.. . ....+.. ........+.|||++|
T Consensus 163 ~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~l 242 (330)
T PRK11028 163 AQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHL 242 (330)
T ss_pred ccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEE
Confidence 1 1 11234467899999999998864 577999999742 2 1222211 1112245567999999
Q ss_pred EEEE-CCCeEEEEEcCCCc--eeeeecCCCCCCCCceeEEEEcCCCCcceeEEEEEeccCcceEEeecCCcccceEEEee
Q 001462 282 GCSF-YRNSVGIWVADVSH--VEPYGVGAPEPDQSICTEVKFNPPGSHSLEKVGIIGRSTSGFRSTSPDYETKDIKTIYV 358 (1074)
Q Consensus 282 Asgs-~DGsV~IWDld~~~--l~~~~~~~~~~~~~~ItsVaFSPDGs~~Lv~vlavG~stG~~r~ivpD~et~eI~~i~i 358 (1074)
+++. .++.|.+|+++... ...... .........++|+|||+++++ .....+.+..+..+.+++.+..+..
T Consensus 243 yv~~~~~~~I~v~~i~~~~~~~~~~~~---~~~~~~p~~~~~~~dg~~l~v----a~~~~~~v~v~~~~~~~g~l~~~~~ 315 (330)
T PRK11028 243 YACDRTASLISVFSVSEDGSVLSFEGH---QPTETQPRGFNIDHSGKYLIA----AGQKSHHISVYEIDGETGLLTELGR 315 (330)
T ss_pred EEecCCCCeEEEEEEeCCCCeEEEeEE---EeccccCCceEECCCCCEEEE----EEccCCcEEEEEEcCCCCcEEEccc
Confidence 8885 46899999985432 222221 111234567899999995333 2333566667776767777666554
Q ss_pred cCCCCcccee
Q 001462 359 DSTGGKPVAS 368 (1074)
Q Consensus 359 Ds~gGepv~~ 368 (1074)
-..++.|+.+
T Consensus 316 ~~~g~~P~~~ 325 (330)
T PRK11028 316 YAVGQGPMWV 325 (330)
T ss_pred cccCCCceEE
Confidence 3456666543
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.2e-15 Score=162.46 Aligned_cols=238 Identities=19% Similarity=0.328 Sum_probs=183.7
Q ss_pred CEEEEEEecCCCcEEEEEECCCeEEEEECCC-----C--c-----eEEEe-eCCCCCeEEEEEc-------CCCCEEEEE
Q 001462 17 NVNCISIGKKACRFLITGGDDQKVNLWAIGK-----P--T-----ALMSL-CGLSSPVDSVAFD-------SAEVLVLAG 76 (1074)
Q Consensus 17 ~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t-----~--k-----~l~sl-~~hs~~ItsLafS-------pdg~~LatG 76 (1074)
....+.|+||| ..|++-+.|..+.+|++.. . . ....+ ......|+..+|- |+..++++.
T Consensus 51 f~kgckWSPDG-SciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~s 129 (406)
T KOG2919|consen 51 FLKGCKWSPDG-SCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVS 129 (406)
T ss_pred hhccceeCCCC-ceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeec
Confidence 35678899999 6788888999999998721 1 0 01111 1234567888885 577899999
Q ss_pred EcCCeEEEEEcCCCeeEEEEeC--CCC---CeEEEEEcCCCCEEEEEECCCeEEEEEC-CCCeEEEEE-------eCCCC
Q 001462 77 ASTGVIKLWDLEESKMVRTLTG--HKS---NCTAVEFHPFGEFFASGCMDTNLKIWDI-RKKGCIHTY-------KGHTR 143 (1074)
Q Consensus 77 s~DG~I~VWDl~tgk~i~tl~~--h~~---~VtsLafSPdg~~LaSgS~DGsI~IWDi-~tg~~v~~l-------~~h~~ 143 (1074)
+.+.-|++||.-+|+....+.. |.+ ...+++|+|||.+|++| ....|++||+ +.|.....+ .+..+
T Consensus 130 sr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~vy~t~~~~k~gq~g 208 (406)
T KOG2919|consen 130 SRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKG 208 (406)
T ss_pred cccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeec-ccceEEEeeccCCCCCCcchhhhhcccccccc
Confidence 9999999999999998776653 332 35689999999999987 5788999999 555422111 12356
Q ss_pred CeEEEEEcC-CCCEEEEEECCCeEEEEECCCCceEEEeeecCCCeEEEEEcCCCcEEEEEeC-CCeEEEEECCC-CcEEE
Q 001462 144 GINTIRFTP-DGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSA-DRTVKFWDLET-FELIG 220 (1074)
Q Consensus 144 ~VtsLafSP-dG~~LaSgs~DGsI~VWDl~tgk~v~~~~~h~g~ItsLafSPdg~lLaTGS~-DGtI~IWDl~t-g~~i~ 220 (1074)
-+.|++|+| +.+.+++|+....+-||.-..+.++..+-+|.+.|+.++|+++|+.|++|.. |..|..||++. ..++.
T Consensus 209 iisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~ 288 (406)
T KOG2919|consen 209 IISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVY 288 (406)
T ss_pred eeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhh
Confidence 789999999 5568999999999999988888999999999999999999999999999874 77899999986 44556
Q ss_pred eeCCCCC-CeEEEEE--ecCCCEEEEE-ECCcEEEEEecC
Q 001462 221 STRPEVT-GVHAITF--HPDGRTLFSG-FDDNLKVYSWEP 256 (1074)
Q Consensus 221 t~~~~~~-~ItsIaf--SPDG~~LasG-sd~~I~Vwd~~s 256 (1074)
.+..|.+ .-..|.| .|+|++|++| .+|.|++||++.
T Consensus 289 ~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~ 328 (406)
T KOG2919|consen 289 ALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKD 328 (406)
T ss_pred hhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCC
Confidence 6666655 3334444 5789999998 788899999987
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=8.5e-16 Score=174.81 Aligned_cols=263 Identities=16% Similarity=0.260 Sum_probs=198.7
Q ss_pred cCCCCEEEEEEecCCCcEEEEEECCCeEEEE-ECCCCceEEEeeCCCCCeE-EEEEc-------CCCCEEEEEEcCCeEE
Q 001462 13 AHSANVNCISIGKKACRFLITGGDDQKVNLW-AIGKPTALMSLCGLSSPVD-SVAFD-------SAEVLVLAGASTGVIK 83 (1074)
Q Consensus 13 gHs~~Vt~IafSPdg~~lLaTGs~DGtV~IW-Dl~t~k~l~sl~~hs~~It-sLafS-------pdg~~LatGs~DG~I~ 83 (1074)
.|...|.|+.|+... ..+++ +.|..+.+| |+.+. ....+.-....+. .+..- .....|+.++.||.+.
T Consensus 12 r~~e~vc~v~w~~~e-ei~~~-~dDh~~~~~~~~~~~-s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~ 88 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNE-EIYFV-SDDHQIFKWSDVSRD-SVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFV 88 (737)
T ss_pred ccceeEEeecccccc-eEEEe-ccCceEEEeecccch-hhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEE
Confidence 567778899998876 44444 445555555 44222 1111111111111 11111 1234788889999999
Q ss_pred EEEcCCCeeEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECC
Q 001462 84 LWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFD 163 (1074)
Q Consensus 84 VWDl~tgk~i~tl~~h~~~VtsLafSPdg~~LaSgS~DGsI~IWDi~tg~~v~~l~~h~~~VtsLafSPdG~~LaSgs~D 163 (1074)
+.+ ..++.-..+..|.+.+.+-.|+|+|.-|++++.||.|++|. ++|-....+-....+|+|++|.|+...++.+ ..
T Consensus 89 il~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c-~g 165 (737)
T KOG1524|consen 89 ILN-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARWAPNSNSIVFC-QG 165 (737)
T ss_pred Eec-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEECCCCCceEEe-cC
Confidence 988 46777778888999999999999999999999999999998 5665544454566789999999988766654 35
Q ss_pred CeEEEEECCCCceEEEeeecCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCCcEEEeeCCCCCCeEEEEEecCCCEEEE
Q 001462 164 NVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFS 243 (1074)
Q Consensus 164 GsI~VWDl~tgk~v~~~~~h~g~ItsLafSPdg~lLaTGS~DGtI~IWDl~tg~~i~t~~~~~~~ItsIafSPDG~~Las 243 (1074)
+.+.|=.+.....+..++.|+|-|.++.|++..+++++|+.|-..++||.. |..+..-..|..+|++++|.|+ ..++.
T Consensus 166 ~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey~ITSva~npd-~~~~v 243 (737)
T KOG1524|consen 166 GHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTSAAEEYAITSVAFNPE-KDYLL 243 (737)
T ss_pred CeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeeccc-CcccccCChhccceeeeeeccc-cceee
Confidence 778888888888888899999999999999999999999999999999975 7778888889999999999999 77777
Q ss_pred EECCcEEEEEecCCeeeeccccCCceeeEEEecCCCEEEEEECCCeEEEE
Q 001462 244 GFDDNLKVYSWEPVICHDSVDMGWSTLGDLCINDGKLLGCSFYRNSVGIW 293 (1074)
Q Consensus 244 Gsd~~I~Vwd~~s~~~~~~l~~~~s~~~~l~spDGklLAsgs~DGsV~IW 293 (1074)
|+-+.+++= -....+++...|++||..+++|...|.+.+=
T Consensus 244 ~S~nt~R~~----------~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A 283 (737)
T KOG1524|consen 244 WSYNTARFS----------SPRVGSIFNLSWSADGTQATCGTSTGQLIVA 283 (737)
T ss_pred eeeeeeeec----------CCCccceEEEEEcCCCceeeccccCceEEEe
Confidence 777776621 1223467788899999999999999977543
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.69 E-value=9.9e-16 Score=166.82 Aligned_cols=239 Identities=23% Similarity=0.393 Sum_probs=186.0
Q ss_pred CCCCEEEEEEecCC---CcEEEEEECCCeEEEEECCCCceEEEeeCCCCCeEEEEEcCCC-CEEEEEEcCCeEEEEEcCC
Q 001462 14 HSANVNCISIGKKA---CRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAE-VLVLAGASTGVIKLWDLEE 89 (1074)
Q Consensus 14 Hs~~Vt~IafSPdg---~~lLaTGs~DGtV~IWDl~t~k~l~sl~~hs~~ItsLafSpdg-~~LatGs~DG~I~VWDl~t 89 (1074)
|...-+.++|+-+. .-++|+||.-|.|+|.|+.+++....+.+|...|..+.|+|+. +++++++.|..|++|++++
T Consensus 88 ~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~ 167 (385)
T KOG1034|consen 88 HDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQT 167 (385)
T ss_pred CCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccC
Confidence 66778888887653 3589999999999999999999999999999999999999965 7899999999999999999
Q ss_pred CeeEEEE---eCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEE----------------------------EE
Q 001462 90 SKMVRTL---TGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIH----------------------------TY 138 (1074)
Q Consensus 90 gk~i~tl---~~h~~~VtsLafSPdg~~LaSgS~DGsI~IWDi~tg~~v~----------------------------~l 138 (1074)
..++..+ .+|.+.|.++.|+.+|.+|++++.|..|++|++...+... +-
T Consensus 168 ~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~ 247 (385)
T KOG1034|consen 168 DVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTT 247 (385)
T ss_pred CeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCcccccccccccc
Confidence 9988876 4799999999999999999999999999999987322100 11
Q ss_pred eCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC-CCc-------------eEEEeeecCCCeEEE--EEcCCCcEEEEE
Q 001462 139 KGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLT-AGK-------------LLHDFKFHEGHIRSI--DFHPLEFLLATG 202 (1074)
Q Consensus 139 ~~h~~~VtsLafSPdG~~LaSgs~DGsI~VWDl~-tgk-------------~v~~~~~h~g~ItsL--afSPdg~lLaTG 202 (1074)
..|...|.|+.|- |+++++-+.++.|..|... -++ .+..+......|+-+ +|.|.++.|+.|
T Consensus 248 diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~g 325 (385)
T KOG1034|consen 248 DIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALG 325 (385)
T ss_pred ccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhc
Confidence 2355566666665 6789998889999999862 111 233344444445554 556778999999
Q ss_pred eCCCeEEEEECCCCcEEE--ee--CCCCCCeEEEEEecCCCEEEEEEC-CcEEEEEe
Q 001462 203 SADRTVKFWDLETFELIG--ST--RPEVTGVHAITFHPDGRTLFSGFD-DNLKVYSW 254 (1074)
Q Consensus 203 S~DGtI~IWDl~tg~~i~--t~--~~~~~~ItsIafSPDG~~LasGsd-~~I~Vwd~ 254 (1074)
...|.|.+||++..+... ++ ......|+..+|+.||.+|+...+ +.+.-||+
T Consensus 326 nq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 326 NQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDR 382 (385)
T ss_pred cCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEe
Confidence 999999999999766521 11 222356899999999999988654 45555554
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.3e-17 Score=194.62 Aligned_cols=246 Identities=24% Similarity=0.421 Sum_probs=196.6
Q ss_pred CceEEEEecCCCCEEEEEEecCCCcEEEEEECCCeEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEE
Q 001462 5 GYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKL 84 (1074)
Q Consensus 5 G~~v~~L~gHs~~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~k~l~sl~~hs~~ItsLafSpdg~~LatGs~DG~I~V 84 (1074)
.+-++.+.||.++|+|+.|...| +++++|+.|..|+||...++.++....+|.+.|+.++.+.+..++++++.|..|++
T Consensus 180 mk~ikrLlgH~naVyca~fDrtg-~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrv 258 (1113)
T KOG0644|consen 180 MKNIKRLLGHRNAVYCAIFDRTG-RYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRV 258 (1113)
T ss_pred HHHHHHHHhhhhheeeeeecccc-ceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEE
Confidence 34456788999999999999998 99999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCeeEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC--------------CeEEEEEe-----------
Q 001462 85 WDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRK--------------KGCIHTYK----------- 139 (1074)
Q Consensus 85 WDl~tgk~i~tl~~h~~~VtsLafSPdg~~LaSgS~DGsI~IWDi~t--------------g~~v~~l~----------- 139 (1074)
|.+.++.++..+.+|.+.|++++|+|-. +.+.||++++||.+- +..+..+.
T Consensus 259 Wrl~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tg 334 (1113)
T KOG0644|consen 259 WRLPDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTG 334 (1113)
T ss_pred EecCCCchHHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccc
Confidence 9999999999999999999999999954 667899999999871 00110000
Q ss_pred -----CCCCCeEEEEEcCCCCEEEE-----------EECCCeEEEEECCCCceEEEeeecCCCeEEEEEcCCC-cEEEEE
Q 001462 140 -----GHTRGINTIRFTPDGRWVVS-----------GGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLE-FLLATG 202 (1074)
Q Consensus 140 -----~h~~~VtsLafSPdG~~LaS-----------gs~DGsI~VWDl~tgk~v~~~~~h~g~ItsLafSPdg-~lLaTG 202 (1074)
.....+-+++|...+-.+++ +-.+..+++|++.+|...+.+.+|...++.|.++|.. .+..++
T Consensus 335 s~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msa 414 (1113)
T KOG0644|consen 335 SRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSA 414 (1113)
T ss_pred cCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhc
Confidence 01111223333333222333 3345568899999999999999999999999999965 556678
Q ss_pred eCCCeEEEEECCCCcEEEeeCCCCCCeEEEEEecCCCEEEEEEC-CcEEEEEec
Q 001462 203 SADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGFD-DNLKVYSWE 255 (1074)
Q Consensus 203 S~DGtI~IWDl~tg~~i~t~~~~~~~ItsIafSPDG~~LasGsd-~~I~Vwd~~ 255 (1074)
+.||...|||+-.|..+.......+.+....|++||..++...+ |.++|+...
T Consensus 415 g~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~lsd~hgql~i~g~g 468 (1113)
T KOG0644|consen 415 GYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIALSDDHGQLYILGTG 468 (1113)
T ss_pred cCCCceEeeecccCCcceeeecccceeeccccCCCCceEecCCCCCceEEeccC
Confidence 89999999999998887766555677788899999999988754 445555443
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.6e-15 Score=168.11 Aligned_cols=206 Identities=17% Similarity=0.323 Sum_probs=170.1
Q ss_pred EEecCCCCEEEEEEecCCCcEEEEEECCCeEEEEECCCC-------ceEEEeeCCCCCeEEEEEcCC-CCEEEEEEcCCe
Q 001462 10 EFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKP-------TALMSLCGLSSPVDSVAFDSA-EVLVLAGASTGV 81 (1074)
Q Consensus 10 ~L~gHs~~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~-------k~l~sl~~hs~~ItsLafSpd-g~~LatGs~DG~ 81 (1074)
.+.||+++|..++|+|.+...||+|+.|.+|.||.+..+ +.+..+.+|...|..++|+|. .+.|++++.|..
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~ 155 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT 155 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence 367999999999999998899999999999999998543 456778899999999999994 478899999999
Q ss_pred EEEEEcCCCeeEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeCCCC-CeEEEEEcCCCCEEEEE
Q 001462 82 IKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTR-GINTIRFTPDGRWVVSG 160 (1074)
Q Consensus 82 I~VWDl~tgk~i~tl~~h~~~VtsLafSPdg~~LaSgS~DGsI~IWDi~tg~~v~~l~~h~~-~VtsLafSPdG~~LaSg 160 (1074)
|.+|++.+|+.+.++. |.+.|+++.|+.+|.+|++++.|..|+|||.++++.+..-.+|.+ .-....|..+|.++-+|
T Consensus 156 v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTG 234 (472)
T KOG0303|consen 156 VSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTG 234 (472)
T ss_pred EEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeec
Confidence 9999999999988888 999999999999999999999999999999999999988877754 34566788889855444
Q ss_pred E---CCCeEEEEECCCCc---eEEEeeecCCCeEEEEEcCCCcEEEEEe-CCCeEEEEECCCCc
Q 001462 161 G---FDNVVKVWDLTAGK---LLHDFKFHEGHIRSIDFHPLEFLLATGS-ADRTVKFWDLETFE 217 (1074)
Q Consensus 161 s---~DGsI~VWDl~tgk---~v~~~~~h~g~ItsLafSPdg~lLaTGS-~DGtI~IWDl~tg~ 217 (1074)
. .+..+-+||...-+ ...++... ..|.---|.+|..+++.++ .|+.|+.|.+..-.
T Consensus 235 fsr~seRq~aLwdp~nl~eP~~~~elDtS-nGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 235 FSRMSERQIALWDPNNLEEPIALQELDTS-NGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred cccccccceeccCcccccCcceeEEeccC-CceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence 3 36789999976543 34445433 3455556888887776655 69999999987654
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.67 E-value=9.8e-14 Score=153.56 Aligned_cols=234 Identities=16% Similarity=0.265 Sum_probs=183.6
Q ss_pred CCCEEEEEEecCCCcEEEEEECCCeEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEEEEcC--CeEEEEEcCCCee
Q 001462 15 SANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGAST--GVIKLWDLEESKM 92 (1074)
Q Consensus 15 s~~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~k~l~sl~~hs~~ItsLafSpdg~~LatGs~D--G~I~VWDl~tgk~ 92 (1074)
...++.+.|..+. .+|..|+.|| .++|.................|..+-|+. .++|..+.+ ..+++++...+..
T Consensus 5 ~~ti~~~~~Nqd~-~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFSS--SLvaiV~~~qpr~Lkv~~~Kk~~~ 80 (391)
T KOG2110|consen 5 KPTINFIGFNQDS-TLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFSS--SLVAIVSIKQPRKLKVVHFKKKTT 80 (391)
T ss_pred Ccceeeeeeccce-eEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeeccc--ceeEEEecCCCceEEEEEcccCce
Confidence 3467778898887 7888888887 57887765554333333344566666764 455555544 4599999998888
Q ss_pred EEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeC---CCCCeEEEEEcCCCCEEEEEE--CCCeEE
Q 001462 93 VRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKG---HTRGINTIRFTPDGRWVVSGG--FDNVVK 167 (1074)
Q Consensus 93 i~tl~~h~~~VtsLafSPdg~~LaSgS~DGsI~IWDi~tg~~v~~l~~---h~~~VtsLafSPdG~~LaSgs--~DGsI~ 167 (1074)
++.+. ....|.++.++ -+.|+++-. ..|+|||+++.+.++++.. +..++.++.++..+.|++.-+ ..|.|.
T Consensus 81 ICe~~-fpt~IL~VrmN--r~RLvV~Le-e~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~ 156 (391)
T KOG2110|consen 81 ICEIF-FPTSILAVRMN--RKRLVVCLE-ESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVV 156 (391)
T ss_pred EEEEe-cCCceEEEEEc--cceEEEEEc-ccEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEE
Confidence 88876 67789999998 455777654 4599999999999988753 344566666666777888744 468999
Q ss_pred EEECCCCceEEEeeecCCCeEEEEEcCCCcEEEEEeCCCe-EEEEECCCCcEEEeeCCCC--CCeEEEEEecCCCEEEEE
Q 001462 168 VWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRT-VKFWDLETFELIGSTRPEV--TGVHAITFHPDGRTLFSG 244 (1074)
Q Consensus 168 VWDl~tgk~v~~~~~h~g~ItsLafSPdg~lLaTGS~DGt-I~IWDl~tg~~i~t~~~~~--~~ItsIafSPDG~~LasG 244 (1074)
+||+.+-+.+..+.+|++.+-+++|+++|.+||+++..|+ |++|.+.+|+.+.+|+... ..|.+++|++++.+|++.
T Consensus 157 l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~s 236 (391)
T KOG2110|consen 157 LFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAAS 236 (391)
T ss_pred EEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEe
Confidence 9999999999999999999999999999999999999997 7999999999999987644 358899999999999985
Q ss_pred -ECCcEEEEEecC
Q 001462 245 -FDDNLKVYSWEP 256 (1074)
Q Consensus 245 -sd~~I~Vwd~~s 256 (1074)
..++|+||.++.
T Consensus 237 S~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 237 SNTETVHIFKLEK 249 (391)
T ss_pred cCCCeEEEEEecc
Confidence 557799999864
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.67 E-value=7e-15 Score=163.14 Aligned_cols=204 Identities=21% Similarity=0.388 Sum_probs=169.1
Q ss_pred EEeCCCCCeEEEEEcCC-CCEEEEEECCCeEEEEECCCCe-------EEEEEeCCCCCeEEEEEcCC-CCEEEEEECCCe
Q 001462 95 TLTGHKSNCTAVEFHPF-GEFFASGCMDTNLKIWDIRKKG-------CIHTYKGHTRGINTIRFTPD-GRWVVSGGFDNV 165 (1074)
Q Consensus 95 tl~~h~~~VtsLafSPd-g~~LaSgS~DGsI~IWDi~tg~-------~v~~l~~h~~~VtsLafSPd-G~~LaSgs~DGs 165 (1074)
.+.+|.++|..++|+|. .+.||+|+.|.+|.||++..+. .+..+.+|...|..++|+|. .+.|++++.|..
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~ 155 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT 155 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence 35689999999999995 4578999999999999986543 46778899999999999994 457889999999
Q ss_pred EEEEECCCCceEEEeeecCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCCcEEEeeCCCCCC-eEEEEEecCCCEEEEE
Q 001462 166 VKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTG-VHAITFHPDGRTLFSG 244 (1074)
Q Consensus 166 I~VWDl~tgk~v~~~~~h~g~ItsLafSPdg~lLaTGS~DGtI~IWDl~tg~~i~t~~~~~~~-ItsIafSPDG~~LasG 244 (1074)
|.+|++.+|+.+..+. |...|++++|+-||.+|++.+.|..|+|||.++++.+.....|.+. -..+.|-.+|.++.+|
T Consensus 156 v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTG 234 (472)
T KOG0303|consen 156 VSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTG 234 (472)
T ss_pred EEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeec
Confidence 9999999999988888 9999999999999999999999999999999999999888777653 5677888999976667
Q ss_pred E----CCcEEEEEecCC---eeeeccccCCceeeEEEecCCCEEE-EEECCCeEEEEEcCCCc
Q 001462 245 F----DDNLKVYSWEPV---ICHDSVDMGWSTLGDLCINDGKLLG-CSFYRNSVGIWVADVSH 299 (1074)
Q Consensus 245 s----d~~I~Vwd~~s~---~~~~~l~~~~s~~~~l~spDGklLA-sgs~DGsV~IWDld~~~ 299 (1074)
. +..+-+||-+.. .....++....++-.++-+|.+++. ||-.|+.|+-|.+....
T Consensus 235 fsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 235 FSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred cccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence 3 456889986543 3345566666777777778888764 55589999999886544
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.4e-14 Score=148.90 Aligned_cols=268 Identities=17% Similarity=0.247 Sum_probs=192.7
Q ss_pred CCEEEEEEecCCCcEEEEEECCCeEEEEECCC---------C-ceEEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEE
Q 001462 16 ANVNCISIGKKACRFLITGGDDQKVNLWAIGK---------P-TALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLW 85 (1074)
Q Consensus 16 ~~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t---------~-k~l~sl~~hs~~ItsLafSpdg~~LatGs~DG~I~VW 85 (1074)
..|..-+|+|.+ ++|++|..+|.|.++.+.. + ..+....+|..+|+.++|+ ..+|++|+ ||.|+-|
T Consensus 11 ~tvf~qa~sp~~-~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw 86 (325)
T KOG0649|consen 11 NTVFAQAISPSK-QYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGW 86 (325)
T ss_pred HHHHHHhhCCcc-eEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEe
Confidence 356667899998 8999999999999998732 2 3345568999999999998 45677765 5999999
Q ss_pred EcCCCee------EEEEe--C-----CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeCCCCCeEEEEEcC
Q 001462 86 DLEESKM------VRTLT--G-----HKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTP 152 (1074)
Q Consensus 86 Dl~tgk~------i~tl~--~-----h~~~VtsLafSPdg~~LaSgS~DGsI~IWDi~tg~~v~~l~~h~~~VtsLafSP 152 (1074)
.+..... +...+ . .--.|.++...|..+-++.++.|+.++-||+++|+....+++|.+.+.++.--.
T Consensus 87 ~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~ 166 (325)
T KOG0649|consen 87 EWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRN 166 (325)
T ss_pred eehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecc
Confidence 8864322 11111 1 124588999999888888888999999999999999999999999999999855
Q ss_pred CCCEEEEEECCCeEEEEECCCCceEEEeeec----------CCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCCcEEEee
Q 001462 153 DGRWVVSGGFDNVVKVWDLTAGKLLHDFKFH----------EGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGST 222 (1074)
Q Consensus 153 dG~~LaSgs~DGsI~VWDl~tgk~v~~~~~h----------~g~ItsLafSPdg~lLaTGS~DGtI~IWDl~tg~~i~t~ 222 (1074)
....+++|++||++++||+++++.+..+... ...|.+++. +..+|++|+ ...+.+|.++..++...+
T Consensus 167 ~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGg-Gp~lslwhLrsse~t~vf 243 (325)
T KOG0649|consen 167 ANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGG-GPKLSLWHLRSSESTCVF 243 (325)
T ss_pred cCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEecC-CCceeEEeccCCCceEEE
Confidence 5556999999999999999999988877532 123555554 467888776 467999999998877666
Q ss_pred CCCCCCeEEEEEecCCCEEEEEECCcEEEEEecCCeeeeccccCCceeeEEEe--cCCCEEEEEECCCeEEEE
Q 001462 223 RPEVTGVHAITFHPDGRTLFSGFDDNLKVYSWEPVICHDSVDMGWSTLGDLCI--NDGKLLGCSFYRNSVGIW 293 (1074)
Q Consensus 223 ~~~~~~ItsIafSPDG~~LasGsd~~I~Vwd~~s~~~~~~l~~~~s~~~~l~s--pDGklLAsgs~DGsV~IW 293 (1074)
.- ...+..+.|..| ..|+.|..+.+.-|.+... ....++.....+....+ .--++|..++..+.+.|+
T Consensus 244 pi-pa~v~~v~F~~d-~vl~~G~g~~v~~~~l~Gv-l~a~ip~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 244 PI-PARVHLVDFVDD-CVLIGGEGNHVQSYTLNGV-LQANIPVESTACYSASWQTSPIKFISIAGFSNKLHIL 313 (325)
T ss_pred ec-ccceeEeeeecc-eEEEeccccceeeeeeccE-EEEeccCCccceeeecccCCceEEEEecccceeeeee
Confidence 43 456788888754 4455555666777776532 22222222222211111 123566667777888877
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.66 E-value=6.2e-16 Score=177.79 Aligned_cols=251 Identities=19% Similarity=0.300 Sum_probs=194.5
Q ss_pred EEecCCCCEEEEEEecCCCcEEEEEECCCeEEEEECCC--------CceEEEeeCCCCCeEEEEEcCCCCEEEEEEcCCe
Q 001462 10 EFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGK--------PTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGV 81 (1074)
Q Consensus 10 ~L~gHs~~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t--------~k~l~sl~~hs~~ItsLafSpdg~~LatGs~DG~ 81 (1074)
++..|.+.|..++|+|.. ..|++|+.||.+++|++.+ -+.+.++.+|.++|.|+++..++.++++|+.||.
T Consensus 289 tl~s~~d~ir~l~~~~se-p~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~ 367 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSE-PVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGT 367 (577)
T ss_pred eeecchhhhhhhhcCCCC-CeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCce
Confidence 677899999999999987 6899999999999999932 3567889999999999999999999999999999
Q ss_pred EEEEEcCCC----------eeEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeCC--CCCeEEEE
Q 001462 82 IKLWDLEES----------KMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGH--TRGINTIR 149 (1074)
Q Consensus 82 I~VWDl~tg----------k~i~tl~~h~~~VtsLafSPdg~~LaSgS~DGsI~IWDi~tg~~v~~l~~h--~~~VtsLa 149 (1074)
|+.|++... .....+.+|.+.|+.+++++....|++++.||+++.|+...... ..+... .+...++.
T Consensus 368 I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd 446 (577)
T KOG0642|consen 368 IRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVD 446 (577)
T ss_pred eeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCCcceEe
Confidence 999965311 23456789999999999999999999999999999999876555 333222 22234555
Q ss_pred EcCCC-CEEEEEECCCeEEEEECCCCceEEEeeec-------CCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCCcEEEe
Q 001462 150 FTPDG-RWVVSGGFDNVVKVWDLTAGKLLHDFKFH-------EGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGS 221 (1074)
Q Consensus 150 fSPdG-~~LaSgs~DGsI~VWDl~tgk~v~~~~~h-------~g~ItsLafSPdg~lLaTGS~DGtI~IWDl~tg~~i~t 221 (1074)
|-... .+.++...-+.-.+++...+..+..+... ...+.-+.++|.+.+.+++..|+.|+++|..+++.+..
T Consensus 447 ~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s 526 (577)
T KOG0642|consen 447 RTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHS 526 (577)
T ss_pred eccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchh
Confidence 54322 12233222333334444444433333311 13467788999999999999999999999999999999
Q ss_pred eCCCCCCeEEEEEecCCCEEEEE-ECCcEEEEEecCCeeeec
Q 001462 222 TRPEVTGVHAITFHPDGRTLFSG-FDDNLKVYSWEPVICHDS 262 (1074)
Q Consensus 222 ~~~~~~~ItsIafSPDG~~LasG-sd~~I~Vwd~~s~~~~~~ 262 (1074)
...|...++++++.|+|-+|++| .++.+.+|.++...+...
T Consensus 527 ~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~e 568 (577)
T KOG0642|consen 527 MVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLE 568 (577)
T ss_pred eeeccceecceeecCCCceEEeecCCceeehhhccchheeec
Confidence 99999999999999999999997 567799999877665443
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.65 E-value=3e-14 Score=150.14 Aligned_cols=233 Identities=18% Similarity=0.202 Sum_probs=178.9
Q ss_pred CeEEEEEcCCCCEEEEEEcCCeEEEEEcCC----------CeeEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEC
Q 001462 60 PVDSVAFDSAEVLVLAGASTGVIKLWDLEE----------SKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDI 129 (1074)
Q Consensus 60 ~ItsLafSpdg~~LatGs~DG~I~VWDl~t----------gk~i~tl~~h~~~VtsLafSPdg~~LaSgS~DGsI~IWDi 129 (1074)
.|..-+|+|.+++|++|..+|.|.++.+.. ...+...+.|.++|+.++|+ ..+|++|+ ||.|+-|..
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W 88 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEW 88 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEeee
Confidence 355668899999999999999999998853 22445567899999999999 56677765 699999987
Q ss_pred CCCeE------EEEEe--C-----CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeeecCCCeEEEEEcCCC
Q 001462 130 RKKGC------IHTYK--G-----HTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLE 196 (1074)
Q Consensus 130 ~tg~~------v~~l~--~-----h~~~VtsLafSPdG~~LaSgs~DGsI~VWDl~tgk~v~~~~~h~g~ItsLafSPdg 196 (1074)
+.... +...+ . .-..|.++...|..+-+++++.|+.++.||+++|+...++++|...|.++.--...
T Consensus 89 ~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~ 168 (325)
T KOG0649|consen 89 NEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNAN 168 (325)
T ss_pred hhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccC
Confidence 64322 11111 1 12358899999977777777789999999999999999999999999999885556
Q ss_pred cEEEEEeCCCeEEEEECCCCcEEEeeCCCCC--------CeEEEEEecCCCEEEEEECCcEEEEEecCCeeeeccccCCc
Q 001462 197 FLLATGSADRTVKFWDLETFELIGSTRPEVT--------GVHAITFHPDGRTLFSGFDDNLKVYSWEPVICHDSVDMGWS 268 (1074)
Q Consensus 197 ~lLaTGS~DGtI~IWDl~tg~~i~t~~~~~~--------~ItsIafSPDG~~LasGsd~~I~Vwd~~s~~~~~~l~~~~s 268 (1074)
..+++|+.||++++||+++++++..+..... +-+-.++.-+..+|++|....+.+|.+....+...++....
T Consensus 169 ~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGgGp~lslwhLrsse~t~vfpipa~ 248 (325)
T KOG0649|consen 169 GQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGGPKLSLWHLRSSESTCVFPIPAR 248 (325)
T ss_pred cceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEecCCCceeEEeccCCCceEEEecccc
Confidence 6788999999999999999998877654321 11223445567799999988999999999988888877655
Q ss_pred eeeEEEecCCCEEEEEECCCeEEEEEcCC
Q 001462 269 TLGDLCINDGKLLGCSFYRNSVGIWVADV 297 (1074)
Q Consensus 269 ~~~~l~spDGklLAsgs~DGsV~IWDld~ 297 (1074)
...+.|. ...++.++..+.|.-|.+..
T Consensus 249 v~~v~F~--~d~vl~~G~g~~v~~~~l~G 275 (325)
T KOG0649|consen 249 VHLVDFV--DDCVLIGGEGNHVQSYTLNG 275 (325)
T ss_pred eeEeeee--cceEEEeccccceeeeeecc
Confidence 5544442 34456666788999998763
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.2e-14 Score=160.39 Aligned_cols=286 Identities=15% Similarity=0.205 Sum_probs=205.9
Q ss_pred eEEEEecCCCCEEEEEEecCCCcEEEEEECCCeEEEEECC------CCceEEEee-CCCCCeEEEEEcCCCCEEEEEEcC
Q 001462 7 KLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIG------KPTALMSLC-GLSSPVDSVAFDSAEVLVLAGAST 79 (1074)
Q Consensus 7 ~v~~L~gHs~~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~------t~k~l~sl~-~hs~~ItsLafSpdg~~LatGs~D 79 (1074)
+.+.+.+|.+.|++|.|+.++ ++|++|+.|..+++|++. ..+.+.... .|...|.|++|.-...+|++|+.+
T Consensus 48 ~qKD~~~H~GCiNAlqFS~N~-~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~ 126 (609)
T KOG4227|consen 48 CQKDVREHTGCINALQFSHND-RFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERW 126 (609)
T ss_pred hhhhhhhhccccceeeeccCC-eEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCc
Confidence 345678999999999999997 999999999999999983 334554443 345899999999999999999999
Q ss_pred CeEEEEEcCCCeeEEEEeC--CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCe-E--EEEEeCCCCCeEEEEEcCC-
Q 001462 80 GVIKLWDLEESKMVRTLTG--HKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKG-C--IHTYKGHTRGINTIRFTPD- 153 (1074)
Q Consensus 80 G~I~VWDl~tgk~i~tl~~--h~~~VtsLafSPdg~~LaSgS~DGsI~IWDi~tg~-~--v~~l~~h~~~VtsLafSPd- 153 (1074)
|+|...|+++.+.+..+.. ..+.|+.+..+|..+.|++.+.+|.|.+||++... . ...........+.+.|+|.
T Consensus 127 ~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~ 206 (609)
T KOG4227|consen 127 GTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPET 206 (609)
T ss_pred ceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCC
Confidence 9999999999888777652 23589999999999999999999999999998654 2 2222334556788999995
Q ss_pred CCEEEEEECCCeEEEEECCCCce-EEEe---eec---CCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCCcEEE-eeCCC
Q 001462 154 GRWVVSGGFDNVVKVWDLTAGKL-LHDF---KFH---EGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIG-STRPE 225 (1074)
Q Consensus 154 G~~LaSgs~DGsI~VWDl~tgk~-v~~~---~~h---~g~ItsLafSPdg~lLaTGS~DGtI~IWDl~tg~~i~-t~~~~ 225 (1074)
..+|++.+..+-+-+||.+.... +... .+. ...-..+.|+|.|..|.+--....-.+||+.+..+.. .+...
T Consensus 207 P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N 286 (609)
T KOG4227|consen 207 PALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHN 286 (609)
T ss_pred ceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccCC
Confidence 45778888889999999976532 2221 111 1123567899999988887766667788988754433 33211
Q ss_pred C------CCeEEEEEecCCCEEEEEECC-cEEEEEecCCe--------ee---------------eccccCCcee-eEEE
Q 001462 226 V------TGVHAITFHPDGRTLFSGFDD-NLKVYSWEPVI--------CH---------------DSVDMGWSTL-GDLC 274 (1074)
Q Consensus 226 ~------~~ItsIafSPDG~~LasGsd~-~I~Vwd~~s~~--------~~---------------~~l~~~~s~~-~~l~ 274 (1074)
. ..+.+++|..|-. +++|+|. +|++|.+.... .+ ..+..+.++. .+.|
T Consensus 287 ~~GY~N~~T~KS~~F~~D~~-v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF 365 (609)
T KOG4227|consen 287 PNGYCNIKTIKSMTFIDDYT-VATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRF 365 (609)
T ss_pred CCcceeeeeeeeeeeeccee-eeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceee
Confidence 1 2366778876644 7778766 59999874211 01 1122222222 3344
Q ss_pred ecCCCEEEEEECCCeEEEEE
Q 001462 275 INDGKLLGCSFYRNSVGIWV 294 (1074)
Q Consensus 275 spDGklLAsgs~DGsV~IWD 294 (1074)
.+...+|++++-.+.++||.
T Consensus 366 ~~H~~~l~SSGVE~~~KlWS 385 (609)
T KOG4227|consen 366 SQHNNLLVSSGVENSFKLWS 385 (609)
T ss_pred cCCcceEeccchhhheeccc
Confidence 56677777777888999993
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.8e-14 Score=169.77 Aligned_cols=233 Identities=12% Similarity=0.062 Sum_probs=162.6
Q ss_pred CCeEEEEEcCCCeeEEEEeCCCCCeEEEEEcCCCCEEEEEECC---CeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCC
Q 001462 79 TGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMD---TNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGR 155 (1074)
Q Consensus 79 DG~I~VWDl~tgk~i~tl~~h~~~VtsLafSPdg~~LaSgS~D---GsI~IWDi~tg~~v~~l~~h~~~VtsLafSPdG~ 155 (1074)
+..|.+||..... .+.+..+...+.++.|+|||+.|+.++.+ ..|++||+.++..... ....+....++|+|||+
T Consensus 183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l-~~~~g~~~~~~wSPDG~ 260 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVV-ASFRGHNGAPAFSPDGS 260 (429)
T ss_pred eEEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEE-ecCCCccCceeECCCCC
Confidence 4689999986554 45666778889999999999999887653 4699999988754222 21222345789999999
Q ss_pred EEEEEE-CCCeE--EEEECCCCceEEEeeecCCCeEEEEEcCCCcEEEEEe-CCCeEEEEECCCC-cEEEeeCCCCCCeE
Q 001462 156 WVVSGG-FDNVV--KVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGS-ADRTVKFWDLETF-ELIGSTRPEVTGVH 230 (1074)
Q Consensus 156 ~LaSgs-~DGsI--~VWDl~tgk~v~~~~~h~g~ItsLafSPdg~lLaTGS-~DGtI~IWDl~tg-~~i~t~~~~~~~It 230 (1074)
+|+++. .+|.+ ++||+.++.. ..+..+...+....|+|||..|+.++ .+|...||++... .....+ .+.. .
T Consensus 261 ~La~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~--~ 336 (429)
T PRK01742 261 RLAFASSKDGVLNIYVMGANGGTP-SQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG--Y 336 (429)
T ss_pred EEEEEEecCCcEEEEEEECCCCCe-EeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC--C
Confidence 888765 57754 5557766654 44555667788999999999777655 5677888876432 222222 2322 4
Q ss_pred EEEEecCCCEEEEEECCcEEEEEecCCeeeeccccCCceeeEEEecCCCEEEEEECCCeEEEEEc---CCCceeeeecCC
Q 001462 231 AITFHPDGRTLFSGFDDNLKVYSWEPVICHDSVDMGWSTLGDLCINDGKLLGCSFYRNSVGIWVA---DVSHVEPYGVGA 307 (1074)
Q Consensus 231 sIafSPDG~~LasGsd~~I~Vwd~~s~~~~~~l~~~~s~~~~l~spDGklLAsgs~DGsV~IWDl---d~~~l~~~~~~~ 307 (1074)
.+.|+|||++|+.+..+.+.+||+..+....... .+......++|||++|++++.+|.+.+|.+ +......+
T Consensus 337 ~~~~SpDG~~ia~~~~~~i~~~Dl~~g~~~~lt~-~~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l---- 411 (429)
T PRK01742 337 SAQISADGKTLVMINGDNVVKQDLTSGSTEVLSS-TFLDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARL---- 411 (429)
T ss_pred CccCCCCCCEEEEEcCCCEEEEECCCCCeEEecC-CCCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEc----
Confidence 5789999999998777778889987765433222 223345678899999999999998888765 33322222
Q ss_pred CCCCCCceeEEEEcCC
Q 001462 308 PEPDQSICTEVKFNPP 323 (1074)
Q Consensus 308 ~~~~~~~ItsVaFSPD 323 (1074)
..+.+.+..++|||.
T Consensus 412 -~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 412 -PGSDGQVKFPAWSPY 426 (429)
T ss_pred -cCCCCCCCCcccCCC
Confidence 345677888999995
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.63 E-value=8e-14 Score=167.34 Aligned_cols=282 Identities=21% Similarity=0.355 Sum_probs=207.4
Q ss_pred cCCCCEEEEEEecCCCcEEEEEECCCeEEEEEC-C---CCceEEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcC
Q 001462 13 AHSANVNCISIGKKACRFLITGGDDQKVNLWAI-G---KPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLE 88 (1074)
Q Consensus 13 gHs~~Vt~IafSPdg~~lLaTGs~DGtV~IWDl-~---t~k~l~sl~~hs~~ItsLafSpdg~~LatGs~DG~I~VWDl~ 88 (1074)
.|.-.++|.++||.+ +++|+|..||.|.+|.- . .......+.-|...|.+++|+++|.+|++||..|.+.+|.++
T Consensus 203 ~Htf~~t~~~~spn~-~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~ 281 (792)
T KOG1963|consen 203 HHTFNITCVALSPNE-RYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLE 281 (792)
T ss_pred hhcccceeEEecccc-ceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeec
Confidence 466779999999999 99999999999999964 2 223456678899999999999999999999999999999999
Q ss_pred CCeeEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeC-----------CCCCeEEEEEcCCCCEE
Q 001462 89 ESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKG-----------HTRGINTIRFTPDGRWV 157 (1074)
Q Consensus 89 tgk~i~tl~~h~~~VtsLafSPdg~~LaSgS~DGsI~IWDi~tg~~v~~l~~-----------h~~~VtsLafSPdG~~L 157 (1074)
+++ .+-+..-.++|..+.|+||+.+.+....|..|.+....+......+.+ ..+-.+.++++|.-+.+
T Consensus 282 T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~ 360 (792)
T KOG1963|consen 282 TGK-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSL 360 (792)
T ss_pred CCC-cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCce
Confidence 988 555666789999999999999999999999999998755443333221 23446788999976778
Q ss_pred EEEECCCeEEEEECCCCceEEEeee-----cCC------CeEEEEEcCCCcEEEEEe--------CCC--eEEEEECCCC
Q 001462 158 VSGGFDNVVKVWDLTAGKLLHDFKF-----HEG------HIRSIDFHPLEFLLATGS--------ADR--TVKFWDLETF 216 (1074)
Q Consensus 158 aSgs~DGsI~VWDl~tgk~v~~~~~-----h~g------~ItsLafSPdg~lLaTGS--------~DG--tI~IWDl~tg 216 (1074)
+..+..|.|.+||+.+...+..+.. +.+ .++.++.+-.|.+++++- .|| .+++|-....
T Consensus 361 vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~ 440 (792)
T KOG1963|consen 361 VLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPN 440 (792)
T ss_pred eecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCC
Confidence 8888999999999988877666542 222 366777777899999873 233 4788876532
Q ss_pred ----cEEE-eeCCCCCCeEEEEEecCC---CEEEEEECCcEEEEEecC----------CeeeeccccCC-ceeeEEEecC
Q 001462 217 ----ELIG-STRPEVTGVHAITFHPDG---RTLFSGFDDNLKVYSWEP----------VICHDSVDMGW-STLGDLCIND 277 (1074)
Q Consensus 217 ----~~i~-t~~~~~~~ItsIafSPDG---~~LasGsd~~I~Vwd~~s----------~~~~~~l~~~~-s~~~~l~spD 277 (1074)
.+.. ...+|...+...+|.+.- +.+.++.++.++||.+.. ..|+..-..+. ......|+.|
T Consensus 441 ~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~d 520 (792)
T KOG1963|consen 441 SKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQD 520 (792)
T ss_pred cceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCC
Confidence 2222 234566665555555432 334446788899999943 23333322223 3334455578
Q ss_pred CCEEEEEECCCeEEEEEcCC
Q 001462 278 GKLLGCSFYRNSVGIWVADV 297 (1074)
Q Consensus 278 GklLAsgs~DGsV~IWDld~ 297 (1074)
|.+|+++ .++.|.|||.+.
T Consensus 521 Gslla~s-~~~~Itiwd~~~ 539 (792)
T KOG1963|consen 521 GSLLAVS-FDDTITIWDYDT 539 (792)
T ss_pred CcEEEEe-cCCEEEEecCCC
Confidence 8888776 788999999986
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.8e-14 Score=157.93 Aligned_cols=266 Identities=18% Similarity=0.242 Sum_probs=188.2
Q ss_pred cEEEEEECCCeEEEEECCCCceEEEeeCCCCCeEEEEEcC--CCCEEEEEEcCCeEEEEEcCCCeeEEEE--eCCC-CCe
Q 001462 29 RFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDS--AEVLVLAGASTGVIKLWDLEESKMVRTL--TGHK-SNC 103 (1074)
Q Consensus 29 ~lLaTGs~DGtV~IWDl~t~k~l~sl~~hs~~ItsLafSp--dg~~LatGs~DG~I~VWDl~tgk~i~tl--~~h~-~~V 103 (1074)
..+|++...|.|+|||..+++.+..++++...+..+.|.. ....+.+|+.||.|++||++.......+ ..+. .+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 4688999999999999999999999999999999999987 4678999999999999999876554333 3343 456
Q ss_pred EEEEEcCCCCEEEEEEC----CCeEEEEECCCCeE-EEEE-eCCCCCeEEEEEcC-CCCEEEEEECCCeEEEEECCCCc-
Q 001462 104 TAVEFHPFGEFFASGCM----DTNLKIWDIRKKGC-IHTY-KGHTRGINTIRFTP-DGRWVVSGGFDNVVKVWDLTAGK- 175 (1074)
Q Consensus 104 tsLafSPdg~~LaSgS~----DGsI~IWDi~tg~~-v~~l-~~h~~~VtsLafSP-dG~~LaSgs~DGsI~VWDl~tgk- 175 (1074)
.+++.+-.++.+++|.. +-.|.+||++..+. +..+ ..|.+.|++++|+| +.++|++|+.||.|.+||+....
T Consensus 121 ~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~E 200 (376)
T KOG1188|consen 121 ICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNE 200 (376)
T ss_pred eEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcc
Confidence 67777667788888743 67799999998765 4443 56899999999999 56799999999999999997542
Q ss_pred ---eEEEeeecCCCeEEEEEcCCC-cEEEEEeCCCeEEEEECCCCcEEEeeCCCCC------------CeEEEEEecCCC
Q 001462 176 ---LLHDFKFHEGHIRSIDFHPLE-FLLATGSADRTVKFWDLETFELIGSTRPEVT------------GVHAITFHPDGR 239 (1074)
Q Consensus 176 ---~v~~~~~h~g~ItsLafSPdg-~lLaTGS~DGtI~IWDl~tg~~i~t~~~~~~------------~ItsIafSPDG~ 239 (1074)
++..+. |...|.++.|..++ +.|.+-+..++..+|+++.+.+...+..... .+-......++.
T Consensus 201 eDaL~~viN-~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~ 279 (376)
T KOG1188|consen 201 EDALLHVIN-HGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKD 279 (376)
T ss_pred hhhHHHhhc-ccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCCCcc
Confidence 233343 66779999999876 4588888899999999998875544332211 111111122333
Q ss_pred EEEE-EE-CCcEEEEEec---CCe---eeecccc-CCceeeEEEe-cCCCEEEEEECCCeEEEEEc
Q 001462 240 TLFS-GF-DDNLKVYSWE---PVI---CHDSVDM-GWSTLGDLCI-NDGKLLGCSFYRNSVGIWVA 295 (1074)
Q Consensus 240 ~Las-Gs-d~~I~Vwd~~---s~~---~~~~l~~-~~s~~~~l~s-pDGklLAsgs~DGsV~IWDl 295 (1074)
.++. |. .+...++-+. ++. ....+.. +..++..+++ ..+.++.+|+.||.+.+|..
T Consensus 280 ~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 280 TCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKV 345 (376)
T ss_pred eEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEec
Confidence 4443 33 3444444443 111 1222222 1222333333 46789999999999999985
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.7e-14 Score=158.19 Aligned_cols=272 Identities=16% Similarity=0.214 Sum_probs=196.3
Q ss_pred CEEEEEEcCCeEEEEEcCCCeeEEEEeCCCCCeEEEEEcC--CCCEEEEEECCCeEEEEECCCCeEEEEE--eCCC-CCe
Q 001462 71 VLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHP--FGEFFASGCMDTNLKIWDIRKKGCIHTY--KGHT-RGI 145 (1074)
Q Consensus 71 ~~LatGs~DG~I~VWDl~tgk~i~tl~~h~~~VtsLafSP--dg~~LaSgS~DGsI~IWDi~tg~~v~~l--~~h~-~~V 145 (1074)
..++++...|.|++||+.+++.+..++++...+..+.|.. ....+.+|+.||.|++||++.......+ ..+. .+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 5688999999999999999999999999999999999977 4568999999999999999987654433 3344 356
Q ss_pred EEEEEcCCCCEEEEEEC----CCeEEEEECCCCce-EEE-eeecCCCeEEEEEcCC-CcEEEEEeCCCeEEEEECCCCc-
Q 001462 146 NTIRFTPDGRWVVSGGF----DNVVKVWDLTAGKL-LHD-FKFHEGHIRSIDFHPL-EFLLATGSADRTVKFWDLETFE- 217 (1074)
Q Consensus 146 tsLafSPdG~~LaSgs~----DGsI~VWDl~tgk~-v~~-~~~h~g~ItsLafSPd-g~lLaTGS~DGtI~IWDl~tg~- 217 (1074)
.|++..-.++.+++|.. +..|.+||++..+. +.. ...|...|+++.|+|. .++|++|+.||.|.+||++.-.
T Consensus 121 ~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~E 200 (376)
T KOG1188|consen 121 ICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNE 200 (376)
T ss_pred eEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcc
Confidence 67777667777887763 67899999998765 444 3579999999999995 6899999999999999998542
Q ss_pred --EEEeeCCCCCCeEEEEEecCC--CEEEEEECCcEEEEEecCCeeeeccccC-------------CceeeEEEecCCCE
Q 001462 218 --LIGSTRPEVTGVHAITFHPDG--RTLFSGFDDNLKVYSWEPVICHDSVDMG-------------WSTLGDLCINDGKL 280 (1074)
Q Consensus 218 --~i~t~~~~~~~ItsIafSPDG--~~LasGsd~~I~Vwd~~s~~~~~~l~~~-------------~s~~~~l~spDGkl 280 (1074)
.+.....+...|.++.|..++ +.++....++..+|+|+.+.+...+... ...+...+-.++..
T Consensus 201 eDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~ 280 (376)
T KOG1188|consen 201 EDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKDT 280 (376)
T ss_pred hhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCCCcce
Confidence 223333455679999999998 7777788999999999877654333221 11122222235556
Q ss_pred EEEEEC-CCeEEEEEcC---CCceeeeecCCCCCCCCceeEEEEcCCCCcceeEEEEEeccCcceEEee-cC
Q 001462 281 LGCSFY-RNSVGIWVAD---VSHVEPYGVGAPEPDQSICTEVKFNPPGSHSLEKVGIIGRSTSGFRSTS-PD 347 (1074)
Q Consensus 281 LAsgs~-DGsV~IWDld---~~~l~~~~~~~~~~~~~~ItsVaFSPDGs~~Lv~vlavG~stG~~r~iv-pD 347 (1074)
++.++. -|...++-+. .+....-.....-++..-|.++.|.--+. ++..|...|.+..+. +|
T Consensus 281 ~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~-----~l~TGGEDG~l~~Wk~~d 347 (376)
T KOG1188|consen 281 CALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKND-----VLYTGGEDGLLQAWKVED 347 (376)
T ss_pred EEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccc-----eeeccCCCceEEEEecCC
Confidence 655554 5666665432 22222222222234667788888887666 888888888655554 44
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.5e-14 Score=155.47 Aligned_cols=243 Identities=21% Similarity=0.362 Sum_probs=186.5
Q ss_pred EEecCCCCEEEEEEecCCCcEEEEEECC-------CeEEEEECCCC---------ceEEEee-CCCCCeEEEEEcCCCCE
Q 001462 10 EFVAHSANVNCISIGKKACRFLITGGDD-------QKVNLWAIGKP---------TALMSLC-GLSSPVDSVAFDSAEVL 72 (1074)
Q Consensus 10 ~L~gHs~~Vt~IafSPdg~~lLaTGs~D-------GtV~IWDl~t~---------k~l~sl~-~hs~~ItsLafSpdg~~ 72 (1074)
.|..|.+.|..|+-+|-..++|+++..+ ...-||.+... +++..+. .+-+.|.|+.|.|++..
T Consensus 58 vf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~k 137 (370)
T KOG1007|consen 58 VFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDK 137 (370)
T ss_pred hhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCe
Confidence 4677889999999999988888888653 23679988432 2233333 34458999999999999
Q ss_pred EEEEEcCCeEEEEEcCCCee-EEEEe-----CCCCCeEEEEEcC--CCCEEEEEECCCeEEEEECCCCeEEEEE-eCCCC
Q 001462 73 VLAGASTGVIKLWDLEESKM-VRTLT-----GHKSNCTAVEFHP--FGEFFASGCMDTNLKIWDIRKKGCIHTY-KGHTR 143 (1074)
Q Consensus 73 LatGs~DG~I~VWDl~tgk~-i~tl~-----~h~~~VtsLafSP--dg~~LaSgS~DGsI~IWDi~tg~~v~~l-~~h~~ 143 (1074)
|++-. |..|.+|+++.+.. +..+. .+....++-+|+| +|+.+++. .|+++..||+++..+...+ .+|..
T Consensus 138 lasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT~~~~~sI~dAHgq 215 (370)
T KOG1007|consen 138 LASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFWDLRTMKKNNSIEDAHGQ 215 (370)
T ss_pred eEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCcEEEEEccchhhhcchhhhhcc
Confidence 98876 78899999987765 33332 2455677889988 78888876 5899999999988776665 46888
Q ss_pred CeEEEEEcCCCC-EEEEEECCCeEEEEECCCC-ceEEEeeecCCCeEEEEEcCC-CcEEEEEeCCCeEEEEECCCC----
Q 001462 144 GINTIRFTPDGR-WVVSGGFDNVVKVWDLTAG-KLLHDFKFHEGHIRSIDFHPL-EFLLATGSADRTVKFWDLETF---- 216 (1074)
Q Consensus 144 ~VtsLafSPdG~-~LaSgs~DGsI~VWDl~tg-k~v~~~~~h~g~ItsLafSPd-g~lLaTGS~DGtI~IWDl~tg---- 216 (1074)
.|..+.|+|+.. +|++|+.||.|++||++.- .++.++.+|.-.+.++.|+|. ..+|++|+.|..|.+|....-
T Consensus 216 ~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~ 295 (370)
T KOG1007|consen 216 RVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQ 295 (370)
T ss_pred eeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEecccccccc
Confidence 899999999765 5788999999999999865 468889999999999999994 678899999999999965321
Q ss_pred -------------------------cEEEeeCCCCCCeEEEEEecCCCEEEEE--ECCcEEEEEe
Q 001462 217 -------------------------ELIGSTRPEVTGVHAITFHPDGRTLFSG--FDDNLKVYSW 254 (1074)
Q Consensus 217 -------------------------~~i~t~~~~~~~ItsIafSPDG~~LasG--sd~~I~Vwd~ 254 (1074)
..+.++..|...|.+++|+.-..++++. .||.+.|-.+
T Consensus 296 qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V 360 (370)
T KOG1007|consen 296 QIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSV 360 (370)
T ss_pred ccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecC
Confidence 1233456677789999999877777764 5666555433
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.62 E-value=7e-15 Score=156.44 Aligned_cols=283 Identities=15% Similarity=0.212 Sum_probs=200.2
Q ss_pred eEEEEecCCCCEEEEEEecCCCcEEEEEECCCeEEEEECCCCceEEEee-CCCCCeEEEEEcCCCCEEEEEEcCCeEEEE
Q 001462 7 KLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLC-GLSSPVDSVAFDSAEVLVLAGASTGVIKLW 85 (1074)
Q Consensus 7 ~v~~L~gHs~~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~k~l~sl~-~hs~~ItsLafSpdg~~LatGs~DG~I~VW 85 (1074)
++..+.+|.+.|+|+.|..++ +|++|..-|.|++|++.+......+. .+...|+.+.--|+ ..|.+-+.|+.+.+|
T Consensus 6 P~fvLRp~~~~v~s~~fqa~~--rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw 82 (323)
T KOG0322|consen 6 PFFVLRPHSSSVTSVLFQANE--RLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILW 82 (323)
T ss_pred CeeEeccccchheehhhccch--hhhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEE
Confidence 456677999999999999887 59999999999999999888877777 56678888888887 567788899999999
Q ss_pred EcCCCeeEEEEeCCCCCeEEEEEcC-----CCC----EEEEEECCC-eEEEEECCCCeEEEEEe----CCCCCeEEEEEc
Q 001462 86 DLEESKMVRTLTGHKSNCTAVEFHP-----FGE----FFASGCMDT-NLKIWDIRKKGCIHTYK----GHTRGINTIRFT 151 (1074)
Q Consensus 86 Dl~tgk~i~tl~~h~~~VtsLafSP-----dg~----~LaSgS~DG-sI~IWDi~tg~~v~~l~----~h~~~VtsLafS 151 (1074)
++..+..+.. |.-.+.++-|.+ .++ .++.-+... .+.+-|......+.... +..+.+.|..|.
T Consensus 83 ~ia~s~~i~i---~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~ 159 (323)
T KOG0322|consen 83 TIAYSAFISI---HSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKD 159 (323)
T ss_pred EccCcceEEE---eeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeecc
Confidence 9987654432 222333444433 211 112111110 02222222111222211 233456666644
Q ss_pred C-CCC--EEEEEECCCeEEEEECCCCceE----------EEeeecCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCC--C
Q 001462 152 P-DGR--WVVSGGFDNVVKVWDLTAGKLL----------HDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLET--F 216 (1074)
Q Consensus 152 P-dG~--~LaSgs~DGsI~VWDl~tgk~v----------~~~~~h~g~ItsLafSPdg~lLaTGS~DGtI~IWDl~t--g 216 (1074)
. ++. ++++|.++|.+.+||+.++..+ .....|.+++.++.|.+.-..=++|+.+..+..|++.. +
T Consensus 160 ~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~g 239 (323)
T KOG0322|consen 160 HACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTG 239 (323)
T ss_pred ccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccC
Confidence 3 333 4677889999999999988433 33446889999999998766667788888899998863 2
Q ss_pred c--EEEeeCCCCCCeEEEEEecCCCEEEE-EECCcEEEEEecCCeeeeccccCCce-eeEEEecCCCEEEEEECCCeEEE
Q 001462 217 E--LIGSTRPEVTGVHAITFHPDGRTLFS-GFDDNLKVYSWEPVICHDSVDMGWST-LGDLCINDGKLLGCSFYRNSVGI 292 (1074)
Q Consensus 217 ~--~i~t~~~~~~~ItsIafSPDG~~Las-Gsd~~I~Vwd~~s~~~~~~l~~~~s~-~~~l~spDGklLAsgs~DGsV~I 292 (1074)
. ....+.....++..+.+-||++.+++ |.|+.|+||.|++......+..+... ....|++|..++|.++.|++|.+
T Consensus 240 slq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISL 319 (323)
T KOG0322|consen 240 SLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISL 319 (323)
T ss_pred cccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEe
Confidence 2 22333344567889999999999998 78999999999999988887665544 45556688899999999999999
Q ss_pred EEc
Q 001462 293 WVA 295 (1074)
Q Consensus 293 WDl 295 (1074)
|++
T Consensus 320 WkL 322 (323)
T KOG0322|consen 320 WKL 322 (323)
T ss_pred eec
Confidence 985
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.8e-14 Score=166.98 Aligned_cols=225 Identities=14% Similarity=0.099 Sum_probs=159.5
Q ss_pred cCceEEEEecCCCCEEEEEEecCCCcEEEEEECC---CeEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEEEE-cC
Q 001462 4 RGYKLQEFVAHSANVNCISIGKKACRFLITGGDD---QKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGA-ST 79 (1074)
Q Consensus 4 tG~~v~~L~gHs~~Vt~IafSPdg~~lLaTGs~D---GtV~IWDl~t~k~l~sl~~hs~~ItsLafSpdg~~LatGs-~D 79 (1074)
.|...+.+..|...|.+.+|+||| +.|+.++.+ ..|++||+.+++... +.........++|+|||+.|+.++ .+
T Consensus 192 dg~~~~~lt~~~~~v~~p~wSPDG-~~la~~s~~~~~~~i~i~dl~tg~~~~-l~~~~g~~~~~~wSPDG~~La~~~~~~ 269 (429)
T PRK01742 192 DGFNQFIVNRSSQPLMSPAWSPDG-SKLAYVSFENKKSQLVVHDLRSGARKV-VASFRGHNGAPAFSPDGSRLAFASSKD 269 (429)
T ss_pred CCCCceEeccCCCccccceEcCCC-CEEEEEEecCCCcEEEEEeCCCCceEE-EecCCCccCceeECCCCCEEEEEEecC
Confidence 344456677888899999999999 555555432 469999998765322 222223344689999999888765 57
Q ss_pred CeEEE--EEcCCCeeEEEEeCCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEECCCC-eEEEEEeCCCCCeEEEEEcCCCC
Q 001462 80 GVIKL--WDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGC-MDTNLKIWDIRKK-GCIHTYKGHTRGINTIRFTPDGR 155 (1074)
Q Consensus 80 G~I~V--WDl~tgk~i~tl~~h~~~VtsLafSPdg~~LaSgS-~DGsI~IWDi~tg-~~v~~l~~h~~~VtsLafSPdG~ 155 (1074)
|.+.| ||+.++.. ..+..+...+....|+|||+.|+.++ .+|...||++... .....+ .+.. .++.|+|||+
T Consensus 270 g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~--~~~~~SpDG~ 345 (429)
T PRK01742 270 GVLNIYVMGANGGTP-SQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG--YSAQISADGK 345 (429)
T ss_pred CcEEEEEEECCCCCe-EeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC--CCccCCCCCC
Confidence 76555 56655554 45566777788999999999877665 4677777776432 222333 3333 4678999999
Q ss_pred EEEEEECCCeEEEEECCCCceEEEeeecCCCeEEEEEcCCCcEEEEEeCCCeEEEEEC--CCCcEEEeeCCCCCCeEEEE
Q 001462 156 WVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDL--ETFELIGSTRPEVTGVHAIT 233 (1074)
Q Consensus 156 ~LaSgs~DGsI~VWDl~tgk~v~~~~~h~g~ItsLafSPdg~lLaTGS~DGtI~IWDl--~tg~~i~t~~~~~~~ItsIa 233 (1074)
+|++++.++ +.+||+.+++.......+ ....+.|+|+|.+|+.++.+|.+.+|++ ..+..+..+..+.+.+...+
T Consensus 346 ~ia~~~~~~-i~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~~~~p~ 422 (429)
T PRK01742 346 TLVMINGDN-VVKQDLTSGSTEVLSSTF--LDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSDGQVKFPA 422 (429)
T ss_pred EEEEEcCCC-EEEEECCCCCeEEecCCC--CCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEccCCCCCCCCcc
Confidence 998887765 566999888755333222 2356789999999999999998888875 35777888877777888999
Q ss_pred EecC
Q 001462 234 FHPD 237 (1074)
Q Consensus 234 fSPD 237 (1074)
|+|-
T Consensus 423 wsp~ 426 (429)
T PRK01742 423 WSPY 426 (429)
T ss_pred cCCC
Confidence 9984
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.2e-14 Score=165.51 Aligned_cols=204 Identities=18% Similarity=0.275 Sum_probs=171.2
Q ss_pred cEEEEEECCCeEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeeEEEEeCCCCCeEEEEE
Q 001462 29 RFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEF 108 (1074)
Q Consensus 29 ~lLaTGs~DGtV~IWDl~t~k~l~sl~~hs~~ItsLafSpdg~~LatGs~DG~I~VWDl~tgk~i~tl~~h~~~VtsLaf 108 (1074)
..|+.++.||.+.|.+- .++.-..+..|.+.+.+-.|+++|.-|++++.||.|++|. ++|-+..++-.....|+|++|
T Consensus 76 d~~~i~s~DGkf~il~k-~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W 153 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILNK-SARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARW 153 (737)
T ss_pred ceEEEEcCCceEEEecc-cchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEE
Confidence 46888899999998873 4555566788999999999999999999999999999998 466665666667889999999
Q ss_pred cCCCCEEEEEECCCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeeecCCCeE
Q 001462 109 HPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIR 188 (1074)
Q Consensus 109 SPdg~~LaSgS~DGsI~IWDi~tg~~v~~l~~h~~~VtsLafSPdG~~LaSgs~DGsI~VWDl~tgk~v~~~~~h~g~It 188 (1074)
.|+.+.++.+ ..|++.|=-+.....+..++.|.+-|.++.|++..+++++|++|...++||. .|..+..-..|+.+|+
T Consensus 154 ~p~S~~vl~c-~g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~-~G~~Lf~S~~~ey~IT 231 (737)
T KOG1524|consen 154 APNSNSIVFC-QGGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDA-QGANLFTSAAEEYAIT 231 (737)
T ss_pred CCCCCceEEe-cCCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecc-cCcccccCChhcccee
Confidence 9998877775 4678888888888788889999999999999999999999999999999995 5788888888999999
Q ss_pred EEEEcCCCcEEEEEeCCCeEEEEECCCCcEEEeeCCCCCCeEEEEEecCCCEEEEEECCcE
Q 001462 189 SIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGFDDNL 249 (1074)
Q Consensus 189 sLafSPdg~lLaTGS~DGtI~IWDl~tg~~i~t~~~~~~~ItsIafSPDG~~LasGsd~~I 249 (1074)
+++|+|+ ..++.++. .+++ ...+..+.|..++|++||..+++|...+.
T Consensus 232 Sva~npd-~~~~v~S~-nt~R-----------~~~p~~GSifnlsWS~DGTQ~a~gt~~G~ 279 (737)
T KOG1524|consen 232 SVAFNPE-KDYLLWSY-NTAR-----------FSSPRVGSIFNLSWSADGTQATCGTSTGQ 279 (737)
T ss_pred eeeeccc-cceeeeee-eeee-----------ecCCCccceEEEEEcCCCceeeccccCce
Confidence 9999999 66666665 3444 22344577899999999999999876663
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.60 E-value=4e-14 Score=157.95 Aligned_cols=249 Identities=20% Similarity=0.359 Sum_probs=183.3
Q ss_pred EEEEecCCCCEEEEEEecCCCcEEEEEECCCeEEEEECC--------C--------CceEEEeeCCCCCeEEEEEcCCCC
Q 001462 8 LQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIG--------K--------PTALMSLCGLSSPVDSVAFDSAEV 71 (1074)
Q Consensus 8 v~~L~gHs~~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~--------t--------~k~l~sl~~hs~~ItsLafSpdg~ 71 (1074)
+..|..|...|+++.|+|+| .+||+|+.+|.|.||... + ......+.+|...|+.++|++++.
T Consensus 58 ~s~Ls~H~~aVN~vRf~p~g-elLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~ 136 (434)
T KOG1009|consen 58 LSSLSRHTRAVNVVRFSPDG-ELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSN 136 (434)
T ss_pred eecccCCcceeEEEEEcCCc-CeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCc
Confidence 45678899999999999999 899999999999999765 2 223455678999999999999999
Q ss_pred EEEEEEcCCeEEEEEcCCCeeEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEe------------
Q 001462 72 LVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYK------------ 139 (1074)
Q Consensus 72 ~LatGs~DG~I~VWDl~tgk~i~tl~~h~~~VtsLafSPdg~~LaSgS~DGsI~IWDi~tg~~v~~l~------------ 139 (1074)
++++++.|..+++||+..|.....+..|...+..++|.|-++++++-+.|...+.+.+.....++...
T Consensus 137 ~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~ 216 (434)
T KOG1009|consen 137 FLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNER 216 (434)
T ss_pred eeeeeeccceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCC
Confidence 99999999999999999999999999999999999999999999999888877777765433222211
Q ss_pred -------CCC----CCeEEEEEcCCCCEEEEEEC----CCe-----EEEEECCC-CceEEEeeecCCCeEEEEEcC----
Q 001462 140 -------GHT----RGINTIRFTPDGRWVVSGGF----DNV-----VKVWDLTA-GKLLHDFKFHEGHIRSIDFHP---- 194 (1074)
Q Consensus 140 -------~h~----~~VtsLafSPdG~~LaSgs~----DGs-----I~VWDl~t-gk~v~~~~~h~g~ItsLafSP---- 194 (1074)
.|. .....++|+|+|.+|++... ++. .++|+-.. .++...+.+...+...+.|+|
T Consensus 217 e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~e 296 (434)
T KOG1009|consen 217 EGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYE 296 (434)
T ss_pred CcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEE
Confidence 011 23567889999998887541 222 34444221 123333333333444444433
Q ss_pred --------------CCcEEEEEeCCCeEEEEECCCCcEEEeeC-CCCCCeEEEEEecCCCEEEEEE-CCcEEEEEecCCe
Q 001462 195 --------------LEFLLATGSADRTVKFWDLETFELIGSTR-PEVTGVHAITFHPDGRTLFSGF-DDNLKVYSWEPVI 258 (1074)
Q Consensus 195 --------------dg~lLaTGS~DGtI~IWDl~tg~~i~t~~-~~~~~ItsIafSPDG~~LasGs-d~~I~Vwd~~s~~ 258 (1074)
.+..+++++. ..|++||..+..++.... .|...|+.++|++||.+|+..+ ||...+..++...
T Consensus 297 lrp~~~~~~~~~lpyrlvfaiAt~-~svyvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~e 375 (434)
T KOG1009|consen 297 LRPLSSEKFLFVLPYRLVFAIATK-NSVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPWE 375 (434)
T ss_pred eccccccccccccccceEEEEeec-ceEEEeccccccceEEEeeeeeeeecceeecCCCcEEEEeccCCceEEEEEcchh
Confidence 3345666665 589999999877766543 4667899999999999998864 5555555555443
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.60 E-value=7.2e-14 Score=167.13 Aligned_cols=243 Identities=18% Similarity=0.247 Sum_probs=183.9
Q ss_pred CCCCEEEEEEecCCCcEEEEEECCCeEEEEECCCCce--EE----EeeCCCCCeEEEEEcCCC--CEEEEEEcCCeEEEE
Q 001462 14 HSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTA--LM----SLCGLSSPVDSVAFDSAE--VLVLAGASTGVIKLW 85 (1074)
Q Consensus 14 Hs~~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~k~--l~----sl~~hs~~ItsLafSpdg--~~LatGs~DG~I~VW 85 (1074)
-...|.|+.|+|..+.+++.|..+|.|.+||+..+.. .. ....|..+++.+.|..+. .-+++++.||.|..|
T Consensus 241 ~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W 320 (555)
T KOG1587|consen 241 SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSW 320 (555)
T ss_pred cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeee
Confidence 3578999999999999999999999999999976654 22 234688999999997654 449999999999999
Q ss_pred EcCCCee------EEEEe------CCCCCeEEEEEcCC-CCEEEEEECCCeEEEEECCC---Ce-----EEEEEeCCCCC
Q 001462 86 DLEESKM------VRTLT------GHKSNCTAVEFHPF-GEFFASGCMDTNLKIWDIRK---KG-----CIHTYKGHTRG 144 (1074)
Q Consensus 86 Dl~tgk~------i~tl~------~h~~~VtsLafSPd-g~~LaSgS~DGsI~IWDi~t---g~-----~v~~l~~h~~~ 144 (1074)
+++.-.. ..... .....++++.|.+. -..|++|+.+|.|+--+-.. +. .+..+..|.++
T Consensus 321 ~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~ 400 (555)
T KOG1587|consen 321 DTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGP 400 (555)
T ss_pred eccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcc
Confidence 8864322 11111 12345889999884 45799999999988744222 11 12345568899
Q ss_pred eEEEEEcCCCCEEEEEECCCeEEEEECC-CCceEEEeeecCCCeEEEEEcCCC-cEEEEEeCCCeEEEEECCCC--cEEE
Q 001462 145 INTIRFTPDGRWVVSGGFDNVVKVWDLT-AGKLLHDFKFHEGHIRSIDFHPLE-FLLATGSADRTVKFWDLETF--ELIG 220 (1074)
Q Consensus 145 VtsLafSPdG~~LaSgs~DGsI~VWDl~-tgk~v~~~~~h~g~ItsLafSPdg-~lLaTGS~DGtI~IWDl~tg--~~i~ 220 (1074)
|+++.++|-+..++..+.|..++||... ...++..+..+...+++++|+|-. ..++++..||.|.+||+... .++.
T Consensus 401 v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~ 480 (555)
T KOG1587|consen 401 VYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVL 480 (555)
T ss_pred eEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcc
Confidence 9999999966555444449999999987 667777788778889999999964 67888888999999999743 3444
Q ss_pred eeCCCCCCeEEEEEecCCCEEEEEEC-CcEEEEEecC
Q 001462 221 STRPEVTGVHAITFHPDGRTLFSGFD-DNLKVYSWEP 256 (1074)
Q Consensus 221 t~~~~~~~ItsIafSPDG~~LasGsd-~~I~Vwd~~s 256 (1074)
....+....+.+.|+++|+.|++|.. |.+.+|++..
T Consensus 481 s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 481 SQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred cccccccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 44444556788889999999999965 5589998853
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.60 E-value=9.6e-14 Score=170.12 Aligned_cols=253 Identities=17% Similarity=0.253 Sum_probs=181.7
Q ss_pred ccCceEEEEecCCCCEEEEEEecCCCcEEEEEECCCeEEEEECCCC-------ceEEEeeCCCCCeEEEEEcCCCCEEEE
Q 001462 3 KRGYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKP-------TALMSLCGLSSPVDSVAFDSAEVLVLA 75 (1074)
Q Consensus 3 ktG~~v~~L~gHs~~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~-------k~l~sl~~hs~~ItsLafSpdg~~Lat 75 (1074)
-+|..+.+++.|...|..++.++....+|++|+.||+|++|+...- ....++......+.++.+.+++..+|+
T Consensus 1036 p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av 1115 (1431)
T KOG1240|consen 1036 PRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAV 1115 (1431)
T ss_pred ccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEE
Confidence 3688999999999999999998877689999999999999998431 222334445678999999999999999
Q ss_pred EEcCCeEEEEEcCCC--e-----eEEEEeCC--CCCeEEEEEcC-CCC-EEEEEECCCeEEEEECCCCeEEEEEeC--CC
Q 001462 76 GASTGVIKLWDLEES--K-----MVRTLTGH--KSNCTAVEFHP-FGE-FFASGCMDTNLKIWDIRKKGCIHTYKG--HT 142 (1074)
Q Consensus 76 Gs~DG~I~VWDl~tg--k-----~i~tl~~h--~~~VtsLafSP-dg~-~LaSgS~DGsI~IWDi~tg~~v~~l~~--h~ 142 (1074)
++.||.|.+.+++-. . ..+....+ ...|..-+|.. .+. .++.+..-+.|..||++.....+.++. ..
T Consensus 1116 ~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~h 1195 (1431)
T KOG1240|consen 1116 STKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRH 1195 (1431)
T ss_pred EcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccc
Confidence 999999999998752 1 11122222 22233334433 233 677888889999999987766555442 34
Q ss_pred CCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEee-ecCCCeEEEEEcCCC---cEEEEEe--CCCeEEEEECCCC
Q 001462 143 RGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFK-FHEGHIRSIDFHPLE---FLLATGS--ADRTVKFWDLETF 216 (1074)
Q Consensus 143 ~~VtsLafSPdG~~LaSgs~DGsI~VWDl~tgk~v~~~~-~h~g~ItsLafSPdg---~lLaTGS--~DGtI~IWDl~tg 216 (1074)
+.|++++.+|.+.|++.|...|.+.+||++-+.++..+. .+..+|..+..+|-. ...++++ ..+.|.+|++.+|
T Consensus 1196 G~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g 1275 (1431)
T KOG1240|consen 1196 GLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETG 1275 (1431)
T ss_pred cceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccC
Confidence 679999999999999999999999999999988887776 345778888877742 3444444 4778999999988
Q ss_pred cEEEeeCCC-C-------------------CCeEEEEEecCCCEEEEEECCcEEEEEec
Q 001462 217 ELIGSTRPE-V-------------------TGVHAITFHPDGRTLFSGFDDNLKVYSWE 255 (1074)
Q Consensus 217 ~~i~t~~~~-~-------------------~~ItsIafSPDG~~LasGsd~~I~Vwd~~ 255 (1074)
.+...+... . ..+.+..-.+.|-.+..|+|.+|+.||..
T Consensus 1276 ~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~ 1334 (1431)
T KOG1240|consen 1276 LRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPT 1334 (1431)
T ss_pred cceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCC
Confidence 665444322 0 11222222333444444688889999964
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.58 E-value=9.7e-14 Score=151.19 Aligned_cols=245 Identities=14% Similarity=0.202 Sum_probs=195.3
Q ss_pred EEEEecCCCCEEEEEEecCCCcEEEEEECCCeEEEEECCC---CceEEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEE
Q 001462 8 LQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGK---PTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKL 84 (1074)
Q Consensus 8 v~~L~gHs~~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t---~k~l~sl~~hs~~ItsLafSpdg~~LatGs~DG~I~V 84 (1074)
+..|+--..+|+|.+|++|+ ..+|++.....|.||.... .+..+++..|...|++++|+|..+.|++|+.|..-+|
T Consensus 3 ~~~~~~~~~pitchAwn~dr-t~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayV 81 (361)
T KOG1523|consen 3 VVVFHRLLEPITCHAWNSDR-TQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYV 81 (361)
T ss_pred eEEeeeccCceeeeeecCCC-ceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccc
Confidence 44565567899999999998 7899999999999998754 3577889999999999999999999999999999999
Q ss_pred EEcC-CC--eeEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEE----EEeCCCCCeEEEEEcCCCCEE
Q 001462 85 WDLE-ES--KMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIH----TYKGHTRGINTIRFTPDGRWV 157 (1074)
Q Consensus 85 WDl~-tg--k~i~tl~~h~~~VtsLafSPdg~~LaSgS~DGsI~IWDi~tg~~v~----~l~~h~~~VtsLafSPdG~~L 157 (1074)
|... ++ ++.-.+..++...+++.|+|.++.|++|+....|.||-++....-. .-+.+...|.++.|+|++-+|
T Consensus 82 w~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLl 161 (361)
T KOG1523|consen 82 WTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLL 161 (361)
T ss_pred cccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCccee
Confidence 9983 33 3444555688999999999999999999999999999887554322 223455679999999999999
Q ss_pred EEEECCCeEEEEECC------------------CCceEEEeeecCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCCc-E
Q 001462 158 VSGGFDNVVKVWDLT------------------AGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFE-L 218 (1074)
Q Consensus 158 aSgs~DGsI~VWDl~------------------tgk~v~~~~~h~g~ItsLafSPdg~lLaTGS~DGtI~IWDl~tg~-~ 218 (1074)
++|+.|+..++|..- -|++..++....+.+..+.|+|+|..|+-.+.|..+.+-|..... .
T Consensus 162 aaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~ 241 (361)
T KOG1523|consen 162 AAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSER 241 (361)
T ss_pred cccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchh
Confidence 999999999988531 134455555567889999999999999999999999999987654 3
Q ss_pred EEeeCCCCCCeEEEEEecCCCEEEEEECCcEEEEE
Q 001462 219 IGSTRPEVTGVHAITFHPDGRTLFSGFDDNLKVYS 253 (1074)
Q Consensus 219 i~t~~~~~~~ItsIafSPDG~~LasGsd~~I~Vwd 253 (1074)
+.......-+..++.|-.+...+++|.+..-.+|.
T Consensus 242 v~~~~~~~lP~ls~~~ise~~vv~ag~~c~P~lf~ 276 (361)
T KOG1523|consen 242 VQSVATAQLPLLSVSWISENSVVAAGYDCGPVLFV 276 (361)
T ss_pred ccchhhccCCceeeEeecCCceeecCCCCCceEEE
Confidence 33444444677888888887777777665433333
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.58 E-value=7.8e-14 Score=150.11 Aligned_cols=237 Identities=18% Similarity=0.297 Sum_probs=182.1
Q ss_pred cCCCCEEEEEEecCCC----cEEEEEECCCeEEEEECCC--CceE--EEe-----eCCCCCeEEEEEcC-CCCEEEEEEc
Q 001462 13 AHSANVNCISIGKKAC----RFLITGGDDQKVNLWAIGK--PTAL--MSL-----CGLSSPVDSVAFDS-AEVLVLAGAS 78 (1074)
Q Consensus 13 gHs~~Vt~IafSPdg~----~lLaTGs~DGtV~IWDl~t--~k~l--~sl-----~~hs~~ItsLafSp-dg~~LatGs~ 78 (1074)
.|.-+++.+.|.|+.. .+||+++ ..++||.+.. .... ..+ ..+..+++++.|+. +-++|.+.+-
T Consensus 94 d~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSi 171 (364)
T KOG0290|consen 94 DHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSI 171 (364)
T ss_pred CCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecc
Confidence 6788999999999862 4666654 3799999863 2111 111 24567899999987 6688999999
Q ss_pred CCeEEEEEcCCCe---eEEEEeCCCCCeEEEEEcCCC-CEEEEEECCCeEEEEECCCCeEEEEEe---CCCCCeEEEEEc
Q 001462 79 TGVIKLWDLEESK---MVRTLTGHKSNCTAVEFHPFG-EFFASGCMDTNLKIWDIRKKGCIHTYK---GHTRGINTIRFT 151 (1074)
Q Consensus 79 DG~I~VWDl~tgk---~i~tl~~h~~~VtsLafSPdg-~~LaSgS~DGsI~IWDi~tg~~v~~l~---~h~~~VtsLafS 151 (1074)
|-+..|||++.+. ....+-.|..+|+.++|...+ +.|++.+.||.|++||++....-..+. ....+...++|+
T Consensus 172 DTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswn 251 (364)
T KOG0290|consen 172 DTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWN 251 (364)
T ss_pred cCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccC
Confidence 9999999999863 356677899999999999865 478999999999999998765433332 224568889999
Q ss_pred C-CCCEEEEEECC-CeEEEEECCCC-ceEEEeeecCCCeEEEEEcCC-CcEEEEEeCCCeEEEEECCCCcE------EEe
Q 001462 152 P-DGRWVVSGGFD-NVVKVWDLTAG-KLLHDFKFHEGHIRSIDFHPL-EFLLATGSADRTVKFWDLETFEL------IGS 221 (1074)
Q Consensus 152 P-dG~~LaSgs~D-GsI~VWDl~tg-k~v~~~~~h~g~ItsLafSPd-g~lLaTGS~DGtI~IWDl~tg~~------i~t 221 (1074)
+ |-+++++-..| ..|.+.|++.. ..+..+..|.+.|..++|.|. ...|++++.|..+.+||+...-. +..
T Consensus 252 kqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPila 331 (364)
T KOG0290|consen 252 KQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILA 331 (364)
T ss_pred cCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhh
Confidence 8 55677765544 57999999874 578889999999999999996 57899999999999999975321 112
Q ss_pred eCCCCCCeEEEEEec-CCCEEEEEECCcEEEE
Q 001462 222 TRPEVTGVHAITFHP-DGRTLFSGFDDNLKVY 252 (1074)
Q Consensus 222 ~~~~~~~ItsIafSP-DG~~LasGsd~~I~Vw 252 (1074)
+. ..+.|..+.|++ .+.+++++.++.+.+.
T Consensus 332 y~-a~~EVNqi~Ws~~~~Dwiai~~~kkleiL 362 (364)
T KOG0290|consen 332 YT-AGGEVNQIQWSSSQPDWIAICFGKKLEIL 362 (364)
T ss_pred hh-ccceeeeeeecccCCCEEEEEecCeeeEE
Confidence 22 456799999995 5788988888876654
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.58 E-value=4.2e-12 Score=147.04 Aligned_cols=317 Identities=13% Similarity=0.042 Sum_probs=204.8
Q ss_pred EEEEECCCeEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeeEEEEeCCCCCeEEEEEcC
Q 001462 31 LITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHP 110 (1074)
Q Consensus 31 LaTGs~DGtV~IWDl~t~k~l~sl~~hs~~ItsLafSpdg~~LatGs~DG~I~VWDl~tgk~i~tl~~h~~~VtsLafSP 110 (1074)
+++-..+|.|.+.|..+.+.+..+.........+.|++||+++++++.||.|.++|+.+++.+.++.. .....++++++
T Consensus 9 ~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~-G~~~~~i~~s~ 87 (369)
T PF02239_consen 9 YVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKV-GGNPRGIAVSP 87 (369)
T ss_dssp EEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE--SSEEEEEEE--
T ss_pred EEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEec-CCCcceEEEcC
Confidence 34556789999999999999999886554445678999999999999999999999999999999984 44578899999
Q ss_pred CCCEEEEEE-CCCeEEEEECCCCeEEEEEeCC-------CCCeEEEEEcCCCCEEEEEE-CCCeEEEEECCCCceEE-Ee
Q 001462 111 FGEFFASGC-MDTNLKIWDIRKKGCIHTYKGH-------TRGINTIRFTPDGRWVVSGG-FDNVVKVWDLTAGKLLH-DF 180 (1074)
Q Consensus 111 dg~~LaSgS-~DGsI~IWDi~tg~~v~~l~~h-------~~~VtsLafSPdG~~LaSgs-~DGsI~VWDl~tgk~v~-~~ 180 (1074)
||+++++++ ..+.+.++|.++.+.++.+... ...+..+..++.+..++..- ..+.|.+.|....+.+. ..
T Consensus 88 DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~ 167 (369)
T PF02239_consen 88 DGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTT 167 (369)
T ss_dssp TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEE
T ss_pred CCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceee
Confidence 999999886 4799999999999988877532 23577888888888555554 45899999987765432 22
Q ss_pred eecCCCeEEEEEcCCCcEEEEE-eCCCeEEEEECCCCcEEEeeCC----CCCCeEEE-------EEe--cCCCEEE-EEE
Q 001462 181 KFHEGHIRSIDFHPLEFLLATG-SADRTVKFWDLETFELIGSTRP----EVTGVHAI-------TFH--PDGRTLF-SGF 245 (1074)
Q Consensus 181 ~~h~g~ItsLafSPdg~lLaTG-S~DGtI~IWDl~tg~~i~t~~~----~~~~ItsI-------afS--PDG~~La-sGs 245 (1074)
...........|+|++++++++ ..+..|-++|..+++.+..+.. |..+...+ .|. ..+...+ .-.
T Consensus 168 i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig 247 (369)
T PF02239_consen 168 IKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIG 247 (369)
T ss_dssp EE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE
T ss_pred ecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceeccccc
Confidence 2234567889999999987765 4567899999999887765432 22222222 122 1222221 223
Q ss_pred CCcEEEEEecCCeeeeccccCCceeeEEEecCCCEEEEE----ECCCeEEEEEcCCCcee-eeecCCCCCCCCceeEEEE
Q 001462 246 DDNLKVYSWEPVICHDSVDMGWSTLGDLCINDGKLLGCS----FYRNSVGIWVADVSHVE-PYGVGAPEPDQSICTEVKF 320 (1074)
Q Consensus 246 d~~I~Vwd~~s~~~~~~l~~~~s~~~~l~spDGklLAsg----s~DGsV~IWDld~~~l~-~~~~~~~~~~~~~ItsVaF 320 (1074)
.+.+.+|+...++....+......+....+|+++++.+. ...+.|.++|....... .+. ......+..+.|
T Consensus 248 ~~~v~v~d~~~wkvv~~I~~~G~glFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~----~~~~~~~~h~ef 323 (369)
T PF02239_consen 248 TDPVSVHDDYAWKVVKTIPTQGGGLFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTIT----PGPGKRVVHMEF 323 (369)
T ss_dssp --TTT-STTTBTSEEEEEE-SSSS--EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HH----HHHT--EEEEEE
T ss_pred CCccccchhhcCeEEEEEECCCCcceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEe----ccCCCcEeccEE
Confidence 344567777788888888777666777778999999988 34589999998765432 221 122334889999
Q ss_pred cCCCCcceeEEEEEeccCcceEEeecCCcccceEEEe
Q 001462 321 NPPGSHSLEKVGIIGRSTSGFRSTSPDYETKDIKTIY 357 (1074)
Q Consensus 321 SPDGs~~Lv~vlavG~stG~~r~ivpD~et~eI~~i~ 357 (1074)
++||+...+ ..+...| ++.+.|..+.+++...
T Consensus 324 ~~dG~~v~v---S~~~~~~--~i~v~D~~Tl~~~~~i 355 (369)
T PF02239_consen 324 NPDGKEVWV---SVWDGNG--AIVVYDAKTLKEKKRI 355 (369)
T ss_dssp -TTSSEEEE---EEE--TT--EEEEEETTTTEEEEEE
T ss_pred CCCCCEEEE---EEecCCC--EEEEEECCCcEEEEEE
Confidence 999995433 3334443 5777777777666544
|
... |
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.58 E-value=4.2e-14 Score=161.75 Aligned_cols=217 Identities=19% Similarity=0.313 Sum_probs=157.9
Q ss_pred EEEEEEecCCCcEEEEEECCCeEEEEECCCCceEE----EeeCCCCCeEEEEEc-----CCCCEEEEEEcCCeEEEEEcC
Q 001462 18 VNCISIGKKACRFLITGGDDQKVNLWAIGKPTALM----SLCGLSSPVDSVAFD-----SAEVLVLAGASTGVIKLWDLE 88 (1074)
Q Consensus 18 Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~k~l~----sl~~hs~~ItsLafS-----pdg~~LatGs~DG~I~VWDl~ 88 (1074)
+....++-.|.++.+--+ ..+++|+...+..+. ...-......|-+|+ +.+--|++|-..|.|.+.|..
T Consensus 126 ~~~~~~~~~gd~lcFnvg--~~lyv~~~~g~~~~~~pi~k~~y~gt~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp~ 203 (636)
T KOG2394|consen 126 VTNTNQSGKGDRLCFNVG--RELYVYSYRGAADLSKPIDKREYKGTSPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDPI 203 (636)
T ss_pred eeeccccCCCCEEEEecC--CeEEEEEccCcchhccchhhhcccCCCCceecccccccCCCCcceEEeeccCceEEecch
Confidence 334444555533333333 357888775332211 111112334555553 567778899999999999976
Q ss_pred CCeeEEEEe----CCCCCeEEEEEcCCC-CEEEEEECCCeEEEEECCC--------------Ce--------------EE
Q 001462 89 ESKMVRTLT----GHKSNCTAVEFHPFG-EFFASGCMDTNLKIWDIRK--------------KG--------------CI 135 (1074)
Q Consensus 89 tgk~i~tl~----~h~~~VtsLafSPdg-~~LaSgS~DGsI~IWDi~t--------------g~--------------~v 135 (1074)
..+..+.+. .....|+|+.|-|.+ ..|+++-.+|.+++||..- +. ++
T Consensus 204 ~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv 283 (636)
T KOG2394|consen 204 NFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPV 283 (636)
T ss_pred hhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCcc
Confidence 633222121 134679999999854 4667777899999997531 11 11
Q ss_pred EEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeeecCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCC
Q 001462 136 HTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLET 215 (1074)
Q Consensus 136 ~~l~~h~~~VtsLafSPdG~~LaSgs~DGsI~VWDl~tgk~v~~~~~h~g~ItsLafSPdg~lLaTGS~DGtI~IWDl~t 215 (1074)
..+....+.|..++|+|||++||+.+.||.++|||..+.+++..++..-+...|++|+|||++|++|+.|.-|.||.+..
T Consensus 284 ~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~e 363 (636)
T KOG2394|consen 284 ARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEE 363 (636)
T ss_pred ceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEecc
Confidence 11222345788999999999999999999999999999998888887778899999999999999999999999999999
Q ss_pred CcEEEeeCCCCCCeEEEEEec
Q 001462 216 FELIGSTRPEVTGVHAITFHP 236 (1074)
Q Consensus 216 g~~i~t~~~~~~~ItsIafSP 236 (1074)
.+.+..-.+|..+|..++|+|
T Consensus 364 rRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 364 RRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred ceEEEeccccccceeeEeecc
Confidence 999999999999999999997
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.58 E-value=4.2e-13 Score=147.95 Aligned_cols=276 Identities=15% Similarity=0.238 Sum_probs=187.2
Q ss_pred CCEEEEEEecCCCcEEEEEECCCeEEEEECCCCceEEEee-CCCCCeEEEEEcCCC-CEEEEEEcCCeEEEEEcCCC---
Q 001462 16 ANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLC-GLSSPVDSVAFDSAE-VLVLAGASTGVIKLWDLEES--- 90 (1074)
Q Consensus 16 ~~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~k~l~sl~-~hs~~ItsLafSpdg-~~LatGs~DG~I~VWDl~tg--- 90 (1074)
..+..++|++.- ..+|++..|..|++|+-.. .....++ .....|+|++|-|.+ ..|++|+..| |.+|.....
T Consensus 99 ~dlr~~aWhqH~-~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~g-IciW~~s~tln~ 175 (445)
T KOG2139|consen 99 IDLRGVAWHQHI-IAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNA 175 (445)
T ss_pred cceeeEeechhh-hhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecce-eEEEEcCccccc
Confidence 467889999975 5688899999999999766 4444443 345689999999954 6788888765 999976421
Q ss_pred -ee----------EEEEeCCCCCeEEEEEcCCCCEEEEEEC-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEE
Q 001462 91 -KM----------VRTLTGHKSNCTAVEFHPFGEFFASGCM-DTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVV 158 (1074)
Q Consensus 91 -k~----------i~tl~~h~~~VtsLafSPdg~~LaSgS~-DGsI~IWDi~tg~~v~~l~~h~~~VtsLafSPdG~~La 158 (1074)
.. +....+| .+|+++.|.+||..+++++. |..|.|||..++..+.......+.+.-+.|+|||.+|+
T Consensus 176 ~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lf 254 (445)
T KOG2139|consen 176 NRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLF 254 (445)
T ss_pred ccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEE
Confidence 11 1112233 67999999999999999875 67899999999887665544566789999999999999
Q ss_pred EEECCCeEEEEECCCCceEEEeeecCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCCc---------------EEEee-
Q 001462 159 SGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFE---------------LIGST- 222 (1074)
Q Consensus 159 Sgs~DGsI~VWDl~tgk~v~~~~~h~g~ItsLafSPdg~lLaTGS~DGtI~IWDl~tg~---------------~i~t~- 222 (1074)
++..|+..++|......-...+....+.|...+|+|+|.+|+.... |.-++|.+.-.. .+..+
T Consensus 255 aAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~s-gsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~ 333 (445)
T KOG2139|consen 255 AATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACS-GSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQ 333 (445)
T ss_pred EecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEc-CCceEEEEeecCCCccccCcccceeeeeeccch
Confidence 9999999999965433322233334668999999999987766654 444555443100 01111
Q ss_pred ----C----CCCCCeEEEEEecCCCEEEEEECCc---------EEEEEecCCeeeecc----ccCCceeeEEEe---cCC
Q 001462 223 ----R----PEVTGVHAITFHPDGRTLFSGFDDN---------LKVYSWEPVICHDSV----DMGWSTLGDLCI---NDG 278 (1074)
Q Consensus 223 ----~----~~~~~ItsIafSPDG~~LasGsd~~---------I~Vwd~~s~~~~~~l----~~~~s~~~~l~s---pDG 278 (1074)
. ...+++.+++|+|.|.+|++...++ |.+|+....-..... ..+..+....|. .+|
T Consensus 334 e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n~g 413 (445)
T KOG2139|consen 334 EVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLKNEG 413 (445)
T ss_pred hhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeeecccCC
Confidence 1 1245789999999999999976554 444554432222111 111112222222 467
Q ss_pred CEEEEEECCCeEEEEEcC
Q 001462 279 KLLGCSFYRNSVGIWVAD 296 (1074)
Q Consensus 279 klLAsgs~DGsV~IWDld 296 (1074)
.+|..+..-|.+.-|++.
T Consensus 414 ~lLsiaWsTGriq~ypl~ 431 (445)
T KOG2139|consen 414 RLLSIAWSTGRIQRYPLT 431 (445)
T ss_pred cEEEEEeccCceEeeeeE
Confidence 778777777877777664
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.5e-13 Score=164.28 Aligned_cols=280 Identities=16% Similarity=0.228 Sum_probs=204.5
Q ss_pred CEEEEEEecCCCcEEEEEECCCeEEEEECCCCceEEEeeCC---CCCeEEEEEcC--CCCEEEEEEcCCeEEEEEcC-C-
Q 001462 17 NVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGL---SSPVDSVAFDS--AEVLVLAGASTGVIKLWDLE-E- 89 (1074)
Q Consensus 17 ~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~k~l~sl~~h---s~~ItsLafSp--dg~~LatGs~DG~I~VWDl~-t- 89 (1074)
.-..+.|+|-. ..+++++..-.|++||...++.+..+..+ ...|+.+.+-. |..++++|+.||.|+||+-- +
T Consensus 1066 ~pk~~~~hpf~-p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~ 1144 (1387)
T KOG1517|consen 1066 PPKTLKFHPFE-PQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADK 1144 (1387)
T ss_pred CCceeeecCCC-ceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccc
Confidence 45678889887 67788877779999999999887777544 35688888876 45689999999999999632 2
Q ss_pred ---CeeEEEEeC-------CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeC-CCCCeEEEEEcC-CCCEE
Q 001462 90 ---SKMVRTLTG-------HKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKG-HTRGINTIRFTP-DGRWV 157 (1074)
Q Consensus 90 ---gk~i~tl~~-------h~~~VtsLafSPdg~~LaSgS~DGsI~IWDi~tg~~v~~l~~-h~~~VtsLafSP-dG~~L 157 (1074)
.+++.-+.+ ..+.-.-+.|.....+|+++|.-..|+|||.....++..+.. ....|+++.-+- .|+.+
T Consensus 1145 ~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i 1224 (1387)
T KOG1517|consen 1145 WKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNII 1224 (1387)
T ss_pred cCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceE
Confidence 233332221 122224578888777788877788999999988777776643 333466665443 57899
Q ss_pred EEEECCCeEEEEECCCCc---eEEEeeecCCC--eEEEEEcCCCc-EEEEEeCCCeEEEEECCCCcEEE--eeCCC---C
Q 001462 158 VSGGFDNVVKVWDLTAGK---LLHDFKFHEGH--IRSIDFHPLEF-LLATGSADRTVKFWDLETFELIG--STRPE---V 226 (1074)
Q Consensus 158 aSgs~DGsI~VWDl~tgk---~v~~~~~h~g~--ItsLafSPdg~-lLaTGS~DGtI~IWDl~tg~~i~--t~~~~---~ 226 (1074)
++|..||.|++||.+... .+..++.|... |..+.+.+.|. .|++|+.||.|++||++...... .+..| .
T Consensus 1225 ~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yG 1304 (1387)
T KOG1517|consen 1225 AAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYG 1304 (1387)
T ss_pred EEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccC
Confidence 999999999999998653 46677778877 99999998765 49999999999999999732211 11121 2
Q ss_pred CCeEEEEEecCCCEEEEEECCcEEEEEecCCeeeec-------cccCCceeeEEEecCCCEEEEEECCCeEEEEEcCC
Q 001462 227 TGVHAITFHPDGRTLFSGFDDNLKVYSWEPVICHDS-------VDMGWSTLGDLCINDGKLLGCSFYRNSVGIWVADV 297 (1074)
Q Consensus 227 ~~ItsIafSPDG~~LasGsd~~I~Vwd~~s~~~~~~-------l~~~~s~~~~l~spDGklLAsgs~DGsV~IWDld~ 297 (1074)
+..+++..+++...+++|+.+.|+||++........ -.......+..|.|..-+||+|+.|..|.||....
T Consensus 1305 s~lTal~VH~hapiiAsGs~q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k 1382 (1387)
T KOG1517|consen 1305 SALTALTVHEHAPIIASGSAQLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEK 1382 (1387)
T ss_pred ccceeeeeccCCCeeeecCcceEEEEecChhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCC
Confidence 248999999999999999888899999875332111 01123445666777888899999999999997653
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.6e-13 Score=147.83 Aligned_cols=294 Identities=18% Similarity=0.266 Sum_probs=207.7
Q ss_pred CCEEEEEEecCCCcEEEEEECCCeEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEE-EEEcCCeEEEEEcCCCeeEE
Q 001462 16 ANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVL-AGASTGVIKLWDLEESKMVR 94 (1074)
Q Consensus 16 ~~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~k~l~sl~~hs~~ItsLafSpdg~~La-tGs~DG~I~VWDl~tgk~i~ 94 (1074)
+.|.-|.|..|...+|.....|+.|.+|++...+-...+.....++..+.|+|+|+.|+ +...+-.|.||.+.+.+...
T Consensus 49 dki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~ 128 (447)
T KOG4497|consen 49 DKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL 128 (447)
T ss_pred HHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEE
Confidence 46778899999867777778899999999999998889988889999999999996555 55568889999998765433
Q ss_pred EEeCCCCCeEEEEEcCCCCEEEEEECCCe---EEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEC
Q 001462 95 TLTGHKSNCTAVEFHPFGEFFASGCMDTN---LKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDL 171 (1074)
Q Consensus 95 tl~~h~~~VtsLafSPdg~~LaSgS~DGs---I~IWDi~tg~~v~~l~~h~~~VtsLafSPdG~~LaSgs~DGsI~VWDl 171 (1074)
+......+..++|+|+|++.+.++.... +.|..-.....+..++...-..+.+.|+|||.+|++ ||.
T Consensus 129 -~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laV---------wd~ 198 (447)
T KOG4497|consen 129 -LPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAV---------WDN 198 (447)
T ss_pred -ecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEE---------ecc
Confidence 3434556788999999999988865422 222222223334455555556789999999988765 432
Q ss_pred CCCceEEEeeecCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCCcEE--------------------------------
Q 001462 172 TAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELI-------------------------------- 219 (1074)
Q Consensus 172 ~tgk~v~~~~~h~g~ItsLafSPdg~lLaTGS~DGtI~IWDl~tg~~i-------------------------------- 219 (1074)
--.-.+..+.. .-.+..+.|+|.+.+|++|+.|+.+++.+--+++..
T Consensus 199 ~Leykv~aYe~-~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cL 277 (447)
T KOG4497|consen 199 VLEYKVYAYER-GLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCL 277 (447)
T ss_pred hhhheeeeeee-ccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhccccc
Confidence 21111222221 234778899999999999999998876542211100
Q ss_pred ----------------------------EeeC------CCCCCeEEEEEecCCCEEEEEECC---cEEEEEecCCeeeec
Q 001462 220 ----------------------------GSTR------PEVTGVHAITFHPDGRTLFSGFDD---NLKVYSWEPVICHDS 262 (1074)
Q Consensus 220 ----------------------------~t~~------~~~~~ItsIafSPDG~~LasGsd~---~I~Vwd~~s~~~~~~ 262 (1074)
..++ ....++.-++|++|..|+++-.|+ .+.+||+...+.+..
T Consensus 278 sf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~av 357 (447)
T KOG4497|consen 278 SFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAV 357 (447)
T ss_pred ccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhh
Confidence 0011 112246778999999999997665 489999998888777
Q ss_pred cccCCceeeEEEecCCCEEEEEECCCeEEEEEcCCCceeeeecCCCCCCCCceeEEEEcCCCC
Q 001462 263 VDMGWSTLGDLCINDGKLLGCSFYRNSVGIWVADVSHVEPYGVGAPEPDQSICTEVKFNPPGS 325 (1074)
Q Consensus 263 l~~~~s~~~~l~spDGklLAsgs~DGsV~IWDld~~~l~~~~~~~~~~~~~~ItsVaFSPDGs 325 (1074)
+.....+....+.|....|+.......+++|.... ++.++. ...+-.|..++|.-+|.
T Consensus 358 LiQk~piraf~WdP~~prL~vctg~srLY~W~psg----~~~V~v-P~~GF~i~~l~W~~~g~ 415 (447)
T KOG4497|consen 358 LIQKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSG----PRVVGV-PKKGFNIQKLQWLQPGE 415 (447)
T ss_pred hhhccceeEEEeCCCCceEEEEcCCceEEEEcCCC----ceEEec-CCCCceeeeEEecCCCc
Confidence 76666666666667666666666677899997765 344444 23457899999999999
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.58 E-value=4e-14 Score=163.26 Aligned_cols=233 Identities=22% Similarity=0.325 Sum_probs=173.0
Q ss_pred EEcCCCCEEEE--EEcCCeEEEEEcCC-Cee----EEEEeCCCCCeEEEEEcC-CCCEEEEEECCCeEEEEECCCCe---
Q 001462 65 AFDSAEVLVLA--GASTGVIKLWDLEE-SKM----VRTLTGHKSNCTAVEFHP-FGEFFASGCMDTNLKIWDIRKKG--- 133 (1074)
Q Consensus 65 afSpdg~~Lat--Gs~DG~I~VWDl~t-gk~----i~tl~~h~~~VtsLafSP-dg~~LaSgS~DGsI~IWDi~tg~--- 133 (1074)
-|+.+...+++ .+..|.|.||++.. |++ +-.+. ....|+++.|.| |...|++++.||.|++|.+..+.
T Consensus 586 Gfcan~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~-Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e 664 (1012)
T KOG1445|consen 586 GFCANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLF-NGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPE 664 (1012)
T ss_pred ceeeccceEEEEecCCCceEEEEEcCCCCCCCcccccccc-cCceeeecccCCCChHHeeecccCceEEEEEeccCCCCc
Confidence 34455555554 45578999999864 222 12222 356799999999 55689999999999999987543
Q ss_pred ----EEEEEeCCCCCeEEEEEcC-CCCEEEEEECCCeEEEEECCCCceEEEeeecCCCeEEEEEcCCCcEEEEEeCCCeE
Q 001462 134 ----CIHTYKGHTRGINTIRFTP-DGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTV 208 (1074)
Q Consensus 134 ----~v~~l~~h~~~VtsLafSP-dG~~LaSgs~DGsI~VWDl~tgk~v~~~~~h~g~ItsLafSPdg~lLaTGS~DGtI 208 (1074)
....+..|...|+++.|+| -.+.|++++.|-+|++||+.+++....+.+|.+.|..++|+|+|+.+++.+.||+|
T Consensus 665 ~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~ 744 (1012)
T KOG1445|consen 665 NEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTL 744 (1012)
T ss_pred ccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceE
Confidence 4566788999999999999 45678999999999999999999999999999999999999999999999999999
Q ss_pred EEEECCCCcEE-EeeCCCC-CCeEEEEEecCCCEEEE-EECC----cEEEEEecCCee----eeccccCCceeeEEEecC
Q 001462 209 KFWDLETFELI-GSTRPEV-TGVHAITFHPDGRTLFS-GFDD----NLKVYSWEPVIC----HDSVDMGWSTLGDLCIND 277 (1074)
Q Consensus 209 ~IWDl~tg~~i-~t~~~~~-~~ItsIafSPDG~~Las-Gsd~----~I~Vwd~~s~~~----~~~l~~~~s~~~~l~spD 277 (1074)
++|..++++.. ..-.+.. ..--.|.|.-||+++++ |.+. .+.+|+...... ...++..-+++...+-+|
T Consensus 745 rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~D 824 (1012)
T KOG1445|consen 745 RVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVAPSPLVPHYDYD 824 (1012)
T ss_pred EEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeeecccCccccccccCC
Confidence 99999887543 3322222 22356889999999887 5443 488888765432 222333334444444455
Q ss_pred CC-EEEEEECCCeEEEEEcCCC
Q 001462 278 GK-LLGCSFYRNSVGIWVADVS 298 (1074)
Q Consensus 278 Gk-lLAsgs~DGsV~IWDld~~ 298 (1074)
.. +|++|-.|..|.+|.+-..
T Consensus 825 s~~lfltGKGD~~v~~yEv~~e 846 (1012)
T KOG1445|consen 825 SNVLFLTGKGDRFVNMYEVIYE 846 (1012)
T ss_pred CceEEEecCCCceEEEEEecCC
Confidence 54 5667778899999987443
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.4e-12 Score=151.90 Aligned_cols=233 Identities=12% Similarity=0.030 Sum_probs=158.8
Q ss_pred CeEEEEEcCCCeeEEEEeCCCCCeEEEEEcCCCCEEEEEECC---CeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCE
Q 001462 80 GVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMD---TNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRW 156 (1074)
Q Consensus 80 G~I~VWDl~tgk~i~tl~~h~~~VtsLafSPdg~~LaSgS~D---GsI~IWDi~tg~~v~~l~~h~~~VtsLafSPdG~~ 156 (1074)
..|.+||... ...+.+..+...+.+..|+|||+.|+.++.+ ..|++||+.++.... +....+...++.|+|||+.
T Consensus 184 ~~l~i~D~~g-~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~ 261 (433)
T PRK04922 184 YALQVADSDG-YNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRR 261 (433)
T ss_pred EEEEEECCCC-CCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCE
Confidence 3689999854 4445566677889999999999999887643 469999998776543 3333444567899999997
Q ss_pred EEE-EECCC--eEEEEECCCCceEEEeeecCCCeEEEEEcCCCcEEEEEeC-CC--eEEEEECCCCcEEEeeCCCCCCeE
Q 001462 157 VVS-GGFDN--VVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSA-DR--TVKFWDLETFELIGSTRPEVTGVH 230 (1074)
Q Consensus 157 LaS-gs~DG--sI~VWDl~tgk~v~~~~~h~g~ItsLafSPdg~lLaTGS~-DG--tI~IWDl~tg~~i~t~~~~~~~It 230 (1074)
|+. .+.+| .|++||+.+++.. .+..+.+.....+|+|||+.|+.++. +| .|+++|+.+++... +........
T Consensus 262 l~~~~s~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~-lt~~g~~~~ 339 (433)
T PRK04922 262 LALTLSRDGNPEIYVMDLGSRQLT-RLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER-LTFQGNYNA 339 (433)
T ss_pred EEEEEeCCCCceEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE-eecCCCCcc
Confidence 764 44455 6999999888754 34445555677899999998887764 34 47777877765432 222223345
Q ss_pred EEEEecCCCEEEEEEC-C---cEEEEEecCCeeeeccccCCceeeEEEecCCCEEEEEECC---CeEEEEEcCCCceeee
Q 001462 231 AITFHPDGRTLFSGFD-D---NLKVYSWEPVICHDSVDMGWSTLGDLCINDGKLLGCSFYR---NSVGIWVADVSHVEPY 303 (1074)
Q Consensus 231 sIafSPDG~~LasGsd-~---~I~Vwd~~s~~~~~~l~~~~s~~~~l~spDGklLAsgs~D---GsV~IWDld~~~l~~~ 303 (1074)
.++|+|||++|+.... + .|.+|++..+........ .......+++||++|+..+.+ +.|.+|+++......+
T Consensus 340 ~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~~Lt~~-~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~~~~~l 418 (433)
T PRK04922 340 RASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVRTLTPG-SLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGRVRQRL 418 (433)
T ss_pred CEEECCCCCEEEEEECCCCceeEEEEECCCCCeEECCCC-CCCCCceECCCCCEEEEEEecCCceEEEEEECCCCceEEc
Confidence 7899999999987532 2 388888877655433322 233456788999988877653 3577777765443333
Q ss_pred ecCCCCCCCCceeEEEEcC
Q 001462 304 GVGAPEPDQSICTEVKFNP 322 (1074)
Q Consensus 304 ~~~~~~~~~~~ItsVaFSP 322 (1074)
. ...+.+..++|+|
T Consensus 419 ~-----~~~g~~~~p~wsp 432 (433)
T PRK04922 419 V-----SADGEVREPAWSP 432 (433)
T ss_pred c-----cCCCCCCCCccCC
Confidence 2 2345677788987
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.5e-12 Score=153.59 Aligned_cols=233 Identities=12% Similarity=0.045 Sum_probs=161.8
Q ss_pred eEEEEEcCCCeeEEEEeCCCCCeEEEEEcCCCCEEEEEEC---CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEE
Q 001462 81 VIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCM---DTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWV 157 (1074)
Q Consensus 81 ~I~VWDl~tgk~i~tl~~h~~~VtsLafSPdg~~LaSgS~---DGsI~IWDi~tg~~v~~l~~h~~~VtsLafSPdG~~L 157 (1074)
.|.+||.+.... +.+..+...+...+|+|||+.|+..+. +..|++||+.+++.... ......+..++|+|||++|
T Consensus 180 ~l~~~d~dg~~~-~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l-~~~~~~~~~~~~SPDG~~L 257 (429)
T PRK03629 180 ELRVSDYDGYNQ-FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQV-ASFPRHNGAPAFSPDGSKL 257 (429)
T ss_pred eEEEEcCCCCCC-EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEc-cCCCCCcCCeEECCCCCEE
Confidence 799999875544 344456778999999999998887642 45799999988764332 2233345578999999988
Q ss_pred EEE-ECCC--eEEEEECCCCceEEEeeecCCCeEEEEEcCCCcEEEEEeCC-C--eEEEEECCCCcEEEeeCCCCCCeEE
Q 001462 158 VSG-GFDN--VVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSAD-R--TVKFWDLETFELIGSTRPEVTGVHA 231 (1074)
Q Consensus 158 aSg-s~DG--sI~VWDl~tgk~v~~~~~h~g~ItsLafSPdg~lLaTGS~D-G--tI~IWDl~tg~~i~t~~~~~~~Its 231 (1074)
+.. +.+| .|++||+.+++...... +...+....|+|||+.|+..+.+ | .|+++|+.+++.. .+.........
T Consensus 258 a~~~~~~g~~~I~~~d~~tg~~~~lt~-~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~~ 335 (429)
T PRK03629 258 AFALSKTGSLNLYVMDLASGQIRQVTD-GRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-RITWEGSQNQD 335 (429)
T ss_pred EEEEcCCCCcEEEEEECCCCCEEEccC-CCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-EeecCCCCccC
Confidence 765 3344 59999998887654433 44567889999999988877754 3 4666677766543 33333344567
Q ss_pred EEEecCCCEEEEEEC-C---cEEEEEecCCeeeeccccCCceeeEEEecCCCEEEEEECCCe---EEEEEcCCCceeeee
Q 001462 232 ITFHPDGRTLFSGFD-D---NLKVYSWEPVICHDSVDMGWSTLGDLCINDGKLLGCSFYRNS---VGIWVADVSHVEPYG 304 (1074)
Q Consensus 232 IafSPDG~~LasGsd-~---~I~Vwd~~s~~~~~~l~~~~s~~~~l~spDGklLAsgs~DGs---V~IWDld~~~l~~~~ 304 (1074)
..|+|||++|+.... + .|.+|+++.+...... ..+......|+|||++|+.++.++. +.+|+++......+
T Consensus 336 ~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt-~~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~~~~~l- 413 (429)
T PRK03629 336 ADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLT-DTFLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARL- 413 (429)
T ss_pred EEECCCCCEEEEEEccCCCceEEEEECCCCCeEEeC-CCCCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCCeEEC-
Confidence 899999999987532 2 3778888776544332 2233345678899999999987764 67778876555444
Q ss_pred cCCCCCCCCceeEEEEcCC
Q 001462 305 VGAPEPDQSICTEVKFNPP 323 (1074)
Q Consensus 305 ~~~~~~~~~~ItsVaFSPD 323 (1074)
..+.+.+..++|+|.
T Consensus 414 ----~~~~~~~~~p~Wsp~ 428 (429)
T PRK03629 414 ----PATDGQVKFPAWSPY 428 (429)
T ss_pred ----ccCCCCcCCcccCCC
Confidence 245667888999983
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.55 E-value=8.9e-12 Score=144.32 Aligned_cols=296 Identities=18% Similarity=0.202 Sum_probs=195.8
Q ss_pred ccCceEEEEecCCCCEEEEEEecCCCcEEEEEECCCeEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEEEE-cCCe
Q 001462 3 KRGYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGA-STGV 81 (1074)
Q Consensus 3 ktG~~v~~L~gHs~~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~k~l~sl~~hs~~ItsLafSpdg~~LatGs-~DG~ 81 (1074)
++.+.+..+..+...-..+.|+||| +++++++.||.|.+||+.+.+.+..+.. .....++++++||+++++++ ..+.
T Consensus 24 ~t~~~~~~i~~~~~~h~~~~~s~Dg-r~~yv~~rdg~vsviD~~~~~~v~~i~~-G~~~~~i~~s~DG~~~~v~n~~~~~ 101 (369)
T PF02239_consen 24 ATNKVVARIPTGGAPHAGLKFSPDG-RYLYVANRDGTVSVIDLATGKVVATIKV-GGNPRGIAVSPDGKYVYVANYEPGT 101 (369)
T ss_dssp TT-SEEEEEE-STTEEEEEE-TT-S-SEEEEEETTSEEEEEETTSSSEEEEEE--SSEEEEEEE--TTTEEEEEEEETTE
T ss_pred CCCeEEEEEcCCCCceeEEEecCCC-CEEEEEcCCCeEEEEECCcccEEEEEec-CCCcceEEEcCCCCEEEEEecCCCc
Confidence 3566778887664443457899999 7888889999999999999999988875 44568899999999999876 4799
Q ss_pred EEEEEcCCCeeEEEEeCC-------CCCeEEEEEcCCCCEEEEEECC-CeEEEEECCCCeEE--EEEeCCCCCeEEEEEc
Q 001462 82 IKLWDLEESKMVRTLTGH-------KSNCTAVEFHPFGEFFASGCMD-TNLKIWDIRKKGCI--HTYKGHTRGINTIRFT 151 (1074)
Q Consensus 82 I~VWDl~tgk~i~tl~~h-------~~~VtsLafSPdg~~LaSgS~D-GsI~IWDi~tg~~v--~~l~~h~~~VtsLafS 151 (1074)
+.++|.++.+.++.+... ...+..+..+|....+++.-.| +.|.+.|......+ ..+. .........|+
T Consensus 102 v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~-~g~~~~D~~~d 180 (369)
T PF02239_consen 102 VSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIK-VGRFPHDGGFD 180 (369)
T ss_dssp EEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE---TTEEEEEE-
T ss_pred eeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeec-ccccccccccC
Confidence 999999999998887532 3457788888888866666554 88988898765433 3333 45567899999
Q ss_pred CCCCEEEEE-ECCCeEEEEECCCCceEEEeee----cCCCeEEEEEcCC----------CcEEEEEeCCCeEEEEECCCC
Q 001462 152 PDGRWVVSG-GFDNVVKVWDLTAGKLLHDFKF----HEGHIRSIDFHPL----------EFLLATGSADRTVKFWDLETF 216 (1074)
Q Consensus 152 PdG~~LaSg-s~DGsI~VWDl~tgk~v~~~~~----h~g~ItsLafSPd----------g~lLaTGS~DGtI~IWDl~tg 216 (1074)
|+++|++++ ..+..|.++|..+++.+..+.. |.++...+ .+|. +...++.-..+.+.+||...+
T Consensus 181 pdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~-php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~w 259 (369)
T PF02239_consen 181 PDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANF-PHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAW 259 (369)
T ss_dssp TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEE-EETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBT
T ss_pred cccceeeecccccceeEEEeeccceEEEEeeccccccccccccc-cCCCcceEEeeccccceecccccCCccccchhhcC
Confidence 999988765 4567999999999988776642 33333332 2222 222212222235667888999
Q ss_pred cEEEeeCCCCCCeEEEEEecCCCEEEEE---E--CCcEEEEEecCCeeeeccccCCc--eeeEEEecCCCEEEEEECCC-
Q 001462 217 ELIGSTRPEVTGVHAITFHPDGRTLFSG---F--DDNLKVYSWEPVICHDSVDMGWS--TLGDLCINDGKLLGCSFYRN- 288 (1074)
Q Consensus 217 ~~i~t~~~~~~~ItsIafSPDG~~LasG---s--d~~I~Vwd~~s~~~~~~l~~~~s--~~~~l~spDGklLAsgs~DG- 288 (1074)
+.+..+....++ .-+..+|+++++.+. . .+.|.++|.++......+..... ....-+.+||+++..+.+++
T Consensus 260 kvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~ 338 (369)
T PF02239_consen 260 KVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGN 338 (369)
T ss_dssp SEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--T
T ss_pred eEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCC
Confidence 999998877666 788889999999987 2 24599999999877666654434 77888899999776666543
Q ss_pred -eEEEEEcCCCceeee
Q 001462 289 -SVGIWVADVSHVEPY 303 (1074)
Q Consensus 289 -sV~IWDld~~~l~~~ 303 (1074)
.|.|||..+-++...
T Consensus 339 ~~i~v~D~~Tl~~~~~ 354 (369)
T PF02239_consen 339 GAIVVYDAKTLKEKKR 354 (369)
T ss_dssp TEEEEEETTTTEEEEE
T ss_pred CEEEEEECCCcEEEEE
Confidence 699999876655443
|
... |
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.3e-12 Score=140.78 Aligned_cols=285 Identities=15% Similarity=0.198 Sum_probs=199.5
Q ss_pred cCceEEEEecCCCCEEEEEEe--cCCCcEEEEEEC----CCeEEEEEC--CCCceEEEe-eCCCCCeEEEEEcCCCC---
Q 001462 4 RGYKLQEFVAHSANVNCISIG--KKACRFLITGGD----DQKVNLWAI--GKPTALMSL-CGLSSPVDSVAFDSAEV--- 71 (1074)
Q Consensus 4 tG~~v~~L~gHs~~Vt~IafS--Pdg~~lLaTGs~----DGtV~IWDl--~t~k~l~sl-~~hs~~ItsLafSpdg~--- 71 (1074)
+++.+..|..| -.++++.|+ ++...+||.|+. .+.|.|..+ .+++.+..- ..|..+++.+.|.|+..
T Consensus 34 r~~eiy~Y~ap-~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~ 112 (364)
T KOG0290|consen 34 RRKEIYTYNAP-WPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVY 112 (364)
T ss_pred ccceEEEecCC-CceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccC
Confidence 44556666655 468899998 444468888875 456666655 333333221 36889999999999763
Q ss_pred --EEEEEEcCCeEEEEEcCC--CeeE--EEE-----eCCCCCeEEEEEcC-CCCEEEEEECCCeEEEEECCCCe---EEE
Q 001462 72 --LVLAGASTGVIKLWDLEE--SKMV--RTL-----TGHKSNCTAVEFHP-FGEFFASGCMDTNLKIWDIRKKG---CIH 136 (1074)
Q Consensus 72 --~LatGs~DG~I~VWDl~t--gk~i--~tl-----~~h~~~VtsLafSP-dg~~LaSgS~DGsI~IWDi~tg~---~v~ 136 (1074)
+||+.+ ..+++|.+.. .+.. ..+ ..+..+++++.|+. +-++|.+++-|-+..|||++++. ...
T Consensus 113 pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkT 190 (364)
T KOG0290|consen 113 PDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKT 190 (364)
T ss_pred cchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceee
Confidence 455543 4799999873 2211 111 23567899999987 55788999999999999999863 355
Q ss_pred EEeCCCCCeEEEEEcCCC-CEEEEEECCCeEEEEECCCCceE---EEeeecCCCeEEEEEcCC-CcEEEEEeCC-CeEEE
Q 001462 137 TYKGHTRGINTIRFTPDG-RWVVSGGFDNVVKVWDLTAGKLL---HDFKFHEGHIRSIDFHPL-EFLLATGSAD-RTVKF 210 (1074)
Q Consensus 137 ~l~~h~~~VtsLafSPdG-~~LaSgs~DGsI~VWDl~tgk~v---~~~~~h~g~ItsLafSPd-g~lLaTGS~D-GtI~I 210 (1074)
.+-+|...|..++|...+ ..|++.|.||.+++||++.-+.. .+-.....+...++|++. -+++|+-..| ..|.|
T Consensus 191 QLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~i 270 (364)
T KOG0290|consen 191 QLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVI 270 (364)
T ss_pred EEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEE
Confidence 667899999999999855 47899999999999999876532 222222457888999985 4677776655 46999
Q ss_pred EECCC-CcEEEeeCCCCCCeEEEEEecCC-CEEEEEEC-CcEEEEEecCCee------eeccccCCceeeEEEe-cCCCE
Q 001462 211 WDLET-FELIGSTRPEVTGVHAITFHPDG-RTLFSGFD-DNLKVYSWEPVIC------HDSVDMGWSTLGDLCI-NDGKL 280 (1074)
Q Consensus 211 WDl~t-g~~i~t~~~~~~~ItsIafSPDG-~~LasGsd-~~I~Vwd~~s~~~------~~~l~~~~s~~~~l~s-pDGkl 280 (1074)
.|++. ...+..+..|.+.|..|+|.|.. ..|++++| ....+||+..... .-.+..+..+....|+ ..+.+
T Consensus 271 LDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~a~~EVNqi~Ws~~~~Dw 350 (364)
T KOG0290|consen 271 LDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYTAGGEVNQIQWSSSQPDW 350 (364)
T ss_pred EEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhhccceeeeeeecccCCCE
Confidence 99986 45678899999999999999964 56666554 4588999975432 1122334455555565 36677
Q ss_pred EEEEECCCeEEE
Q 001462 281 LGCSFYRNSVGI 292 (1074)
Q Consensus 281 LAsgs~DGsV~I 292 (1074)
|+++. ++.+.|
T Consensus 351 iai~~-~kklei 361 (364)
T KOG0290|consen 351 IAICF-GKKLEI 361 (364)
T ss_pred EEEEe-cCeeeE
Confidence 88774 444544
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.53 E-value=5.4e-13 Score=145.47 Aligned_cols=235 Identities=18% Similarity=0.240 Sum_probs=178.4
Q ss_pred EeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCC---eeEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEC
Q 001462 53 SLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEES---KMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDI 129 (1074)
Q Consensus 53 sl~~hs~~ItsLafSpdg~~LatGs~DG~I~VWDl~tg---k~i~tl~~h~~~VtsLafSPdg~~LaSgS~DGsI~IWDi 129 (1074)
.+.....+|+|.+|++|+..++++.....|.||..... +..++++.|...|+.++|+|..+.|++|+.|..-++|..
T Consensus 5 ~~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~ 84 (361)
T KOG1523|consen 5 VFHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQ 84 (361)
T ss_pred EeeeccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCcccccc
Confidence 34445679999999999999999999999999988654 467889999999999999999999999999999999998
Q ss_pred CCC---eEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceE----EEeeecCCCeEEEEEcCCCcEEEEE
Q 001462 130 RKK---GCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLL----HDFKFHEGHIRSIDFHPLEFLLATG 202 (1074)
Q Consensus 130 ~tg---~~v~~l~~h~~~VtsLafSPdG~~LaSgs~DGsI~VWDl~tgk~v----~~~~~h~g~ItsLafSPdg~lLaTG 202 (1074)
..+ +....+..++..++++.|+|.++.|++|+....|.||-++...-- +.-+.+...|.+++|+|++-+|+.|
T Consensus 85 ~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaG 164 (361)
T KOG1523|consen 85 PSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAG 164 (361)
T ss_pred CCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceeccc
Confidence 433 344455668889999999999999999999999999887654322 1223466789999999999999999
Q ss_pred eCCCeEEEEECC------------------CCcEEEeeCCCCCCeEEEEEecCCCEEEE-EECCcEEEEEecCCe-eeec
Q 001462 203 SADRTVKFWDLE------------------TFELIGSTRPEVTGVHAITFHPDGRTLFS-GFDDNLKVYSWEPVI-CHDS 262 (1074)
Q Consensus 203 S~DGtI~IWDl~------------------tg~~i~t~~~~~~~ItsIafSPDG~~Las-Gsd~~I~Vwd~~s~~-~~~~ 262 (1074)
+.|+..++|..- -|+++.++....+.+..+.|+|+|..|+. +.|..+.+-|..... ....
T Consensus 165 s~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v~~ 244 (361)
T KOG1523|consen 165 STDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSERVQS 244 (361)
T ss_pred ccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchhccc
Confidence 999999998642 12334445456678999999999999986 778888877765443 2222
Q ss_pred cccCCce-eeEEEecCCCEEEEEECCC
Q 001462 263 VDMGWST-LGDLCINDGKLLGCSFYRN 288 (1074)
Q Consensus 263 l~~~~s~-~~~l~spDGklLAsgs~DG 288 (1074)
......+ ....|..+... +++++|.
T Consensus 245 ~~~~~lP~ls~~~ise~~v-v~ag~~c 270 (361)
T KOG1523|consen 245 VATAQLPLLSVSWISENSV-VAAGYDC 270 (361)
T ss_pred hhhccCCceeeEeecCCce-eecCCCC
Confidence 2222233 33444444444 4444553
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.2e-12 Score=142.34 Aligned_cols=284 Identities=15% Similarity=0.202 Sum_probs=194.3
Q ss_pred CCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeeEEEEe-CCCCCeEEEEEcCCC-CEEEEEECCCeEEEEECCCC----
Q 001462 59 SPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLT-GHKSNCTAVEFHPFG-EFFASGCMDTNLKIWDIRKK---- 132 (1074)
Q Consensus 59 ~~ItsLafSpdg~~LatGs~DG~I~VWDl~tgk~i~tl~-~h~~~VtsLafSPdg-~~LaSgS~DGsI~IWDi~tg---- 132 (1074)
..+..++|++.-..++++..|-.|++||-.. +....++ .....|.+++|-|.+ ..|++|+..| |.||.....
T Consensus 99 ~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~g-IciW~~s~tln~~ 176 (445)
T KOG2139|consen 99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNAN 176 (445)
T ss_pred cceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecce-eEEEEcCcccccc
Confidence 4577899999777888999999999999766 4444444 345679999999964 5788888765 999975421
Q ss_pred e----------EEEEEeCCCCCeEEEEEcCCCCEEEEEEC-CCeEEEEECCCCceEEEeeecCCCeEEEEEcCCCcEEEE
Q 001462 133 G----------CIHTYKGHTRGINTIRFTPDGRWVVSGGF-DNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLAT 201 (1074)
Q Consensus 133 ~----------~v~~l~~h~~~VtsLafSPdG~~LaSgs~-DGsI~VWDl~tgk~v~~~~~h~g~ItsLafSPdg~lLaT 201 (1074)
. .+....+| .+|+++.|.+||..+++++. |..|.|||..++..+.......+.+.-+.|+|||.+|++
T Consensus 177 r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfa 255 (445)
T KOG2139|consen 177 RNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFA 255 (445)
T ss_pred cccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEE
Confidence 1 12222344 57999999999999998874 678999999999877666445677899999999999999
Q ss_pred EeCCCeEEEEECCCCcEEEeeCCCCCCeEEEEEecCCCEEEEEECCcEEEEEecCCee----e------ec---------
Q 001462 202 GSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGFDDNLKVYSWEPVIC----H------DS--------- 262 (1074)
Q Consensus 202 GS~DGtI~IWDl~tg~~i~t~~~~~~~ItsIafSPDG~~LasGsd~~I~Vwd~~s~~~----~------~~--------- 262 (1074)
+.-|+..++|...............+.|...+|+|+|++|.....+.-.+|.+.-... . ..
T Consensus 256 At~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ 335 (445)
T KOG2139|consen 256 ATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEV 335 (445)
T ss_pred ecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcCCceEEEEeecCCCccccCcccceeeeeeccchhh
Confidence 9999999999655332222222334589999999999999988777767777642110 0 00
Q ss_pred -c-----ccCCceeeEEEecCCCEEEEEECCCe--------EEEEEcCCCceeeeecCCCCCCCCceeEEEEcCCCCcce
Q 001462 263 -V-----DMGWSTLGDLCINDGKLLGCSFYRNS--------VGIWVADVSHVEPYGVGAPEPDQSICTEVKFNPPGSHSL 328 (1074)
Q Consensus 263 -l-----~~~~s~~~~l~spDGklLAsgs~DGs--------V~IWDld~~~l~~~~~~~~~~~~~~ItsVaFSPDGs~~L 328 (1074)
+ -........++-|.|.+||+....+. |.+||........+......+ .....-+.|+|-.+ -
T Consensus 336 ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~-ge~P~~IsF~pl~n--~ 412 (445)
T KOG2139|consen 336 TICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIG-GEYPAYISFGPLKN--E 412 (445)
T ss_pred hhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEeccccc-CCCCceEEeeeccc--C
Confidence 0 01234456667799999999875543 567765433333222111122 22355677777332 2
Q ss_pred eEEEEEeccCcceEEeecCC
Q 001462 329 EKVGIIGRSTSGFRSTSPDY 348 (1074)
Q Consensus 329 v~vlavG~stG~~r~ivpD~ 348 (1074)
-.++.++-++|++..|-..+
T Consensus 413 g~lLsiaWsTGriq~ypl~f 432 (445)
T KOG2139|consen 413 GRLLSIAWSTGRIQRYPLTF 432 (445)
T ss_pred CcEEEEEeccCceEeeeeEE
Confidence 34777888888666655543
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.2e-12 Score=152.15 Aligned_cols=226 Identities=11% Similarity=0.088 Sum_probs=158.0
Q ss_pred CceEEEEecCCCCEEEEEEecCCCcEEEEEE--CCCeEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEEE-EcCC-
Q 001462 5 GYKLQEFVAHSANVNCISIGKKACRFLITGG--DDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAG-ASTG- 80 (1074)
Q Consensus 5 G~~v~~L~gHs~~Vt~IafSPdg~~lLaTGs--~DGtV~IWDl~t~k~l~sl~~hs~~ItsLafSpdg~~LatG-s~DG- 80 (1074)
|...+.+..+...+.+.+|+|||..++++.. .+..|++|++.+++.. .+......+..+.|+|||+.|+.. +.+|
T Consensus 188 g~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~-~l~~~~~~~~~~~~SPDG~~La~~~~~~g~ 266 (429)
T PRK03629 188 GYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGS 266 (429)
T ss_pred CCCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeE-EccCCCCCcCCeEECCCCCEEEEEEcCCCC
Confidence 4445566667778999999999954444432 2457999999777533 222333445578999999988865 3344
Q ss_pred -eEEEEEcCCCeeEEEEeCCCCCeEEEEEcCCCCEEEEEECC-C--eEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCE
Q 001462 81 -VIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMD-T--NLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRW 156 (1074)
Q Consensus 81 -~I~VWDl~tgk~i~tl~~h~~~VtsLafSPdg~~LaSgS~D-G--sI~IWDi~tg~~v~~l~~h~~~VtsLafSPdG~~ 156 (1074)
.|++||+.+++... +..+...+....|+|||+.|+.++.+ | .|+++|+..+.. ..+...........|+|||++
T Consensus 267 ~~I~~~d~~tg~~~~-lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~SpDG~~ 344 (429)
T PRK03629 267 LNLYVMDLASGQIRQ-VTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKF 344 (429)
T ss_pred cEEEEEECCCCCEEE-ccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe-EEeecCCCCccCEEECCCCCE
Confidence 59999998876644 44445567889999999988877654 3 566667776654 333334445667899999999
Q ss_pred EEEEECC---CeEEEEECCCCceEEEeeecCCCeEEEEEcCCCcEEEEEeCCCe---EEEEECCCCcEEEeeCCCCCCeE
Q 001462 157 VVSGGFD---NVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRT---VKFWDLETFELIGSTRPEVTGVH 230 (1074)
Q Consensus 157 LaSgs~D---GsI~VWDl~tgk~v~~~~~h~g~ItsLafSPdg~lLaTGS~DGt---I~IWDl~tg~~i~t~~~~~~~It 230 (1074)
|+..+.+ ..|.+||+.++.... +.. ........|+|||.+|+.++.++. +.+|++. +.....+..+.+.+.
T Consensus 345 Ia~~~~~~g~~~I~~~dl~~g~~~~-Lt~-~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~-G~~~~~l~~~~~~~~ 421 (429)
T PRK03629 345 MVMVSSNGGQQHIAKQDLATGGVQV-LTD-TFLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKARLPATDGQVK 421 (429)
T ss_pred EEEEEccCCCceEEEEECCCCCeEE-eCC-CCCCCCceECCCCCEEEEEEcCCCceEEEEEECC-CCCeEECccCCCCcC
Confidence 9876643 368899998886443 321 122346789999999999887764 6777874 555566666777788
Q ss_pred EEEEec
Q 001462 231 AITFHP 236 (1074)
Q Consensus 231 sIafSP 236 (1074)
..+|+|
T Consensus 422 ~p~Wsp 427 (429)
T PRK03629 422 FPAWSP 427 (429)
T ss_pred CcccCC
Confidence 888987
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.8e-13 Score=147.24 Aligned_cols=200 Identities=20% Similarity=0.394 Sum_probs=155.8
Q ss_pred cCCCCEEEEEEecCCCcEEEEEECCCeEEEEECCCCce-EEEee-----CCCCCeEEEEEcC--CCCEEEEEEcCCeEEE
Q 001462 13 AHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTA-LMSLC-----GLSSPVDSVAFDS--AEVLVLAGASTGVIKL 84 (1074)
Q Consensus 13 gHs~~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~k~-l~sl~-----~hs~~ItsLafSp--dg~~LatGs~DG~I~V 84 (1074)
.|-+.|.||.|.|++.+ +++-. |..|.+|++..+.. ...+. .+....++-+|+| +|+.+++. .|+++..
T Consensus 121 eavg~i~cvew~Pns~k-lasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~ 197 (370)
T KOG1007|consen 121 EAVGKINCVEWEPNSDK-LASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQF 197 (370)
T ss_pred HHhCceeeEEEcCCCCe-eEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCcEEE
Confidence 45579999999999854 44433 78999999977655 33332 3456678889998 78888775 4789999
Q ss_pred EEcCCCeeEEEEe-CCCCCeEEEEEcCCCC-EEEEEECCCeEEEEECCCC-eEEEEEeCCCCCeEEEEEcCCC-CEEEEE
Q 001462 85 WDLEESKMVRTLT-GHKSNCTAVEFHPFGE-FFASGCMDTNLKIWDIRKK-GCIHTYKGHTRGINTIRFTPDG-RWVVSG 160 (1074)
Q Consensus 85 WDl~tgk~i~tl~-~h~~~VtsLafSPdg~-~LaSgS~DGsI~IWDi~tg-~~v~~l~~h~~~VtsLafSPdG-~~LaSg 160 (1074)
||+++.+....+. .|...|..+.|+|+.+ +|++|+.||.|+|||.+.- .++..+.+|...|+++.|+|.. .++++|
T Consensus 198 ~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~ 277 (370)
T KOG1007|consen 198 WDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSG 277 (370)
T ss_pred EEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEec
Confidence 9999877655553 5778899999999876 6788889999999999854 4788899999999999999954 577899
Q ss_pred ECCCeEEEEECCCC-----------------------------ceEEEeeecCCCeEEEEEcCC-CcEEEEEeCCCeEEE
Q 001462 161 GFDNVVKVWDLTAG-----------------------------KLLHDFKFHEGHIRSIDFHPL-EFLLATGSADRTVKF 210 (1074)
Q Consensus 161 s~DGsI~VWDl~tg-----------------------------k~v~~~~~h~g~ItsLafSPd-g~lLaTGS~DGtI~I 210 (1074)
+.|..|.+|-...- ..+..+..|...|++++|+.- --++|+-+.||.+.|
T Consensus 278 ~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviI 357 (370)
T KOG1007|consen 278 GSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVII 357 (370)
T ss_pred CCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEe
Confidence 99999999864320 123456678999999999874 456778899999988
Q ss_pred EECCC
Q 001462 211 WDLET 215 (1074)
Q Consensus 211 WDl~t 215 (1074)
=.+..
T Consensus 358 s~V~r 362 (370)
T KOG1007|consen 358 SSVPR 362 (370)
T ss_pred ecCCh
Confidence 76653
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.3e-14 Score=161.73 Aligned_cols=231 Identities=17% Similarity=0.284 Sum_probs=200.1
Q ss_pred CCEEEEEEecCCCcEEEEEECCCeEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeeEEE
Q 001462 16 ANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRT 95 (1074)
Q Consensus 16 ~~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~k~l~sl~~hs~~ItsLafSpdg~~LatGs~DG~I~VWDl~tgk~i~t 95 (1074)
..-+.+.|+.+| +.|+.|+..|.|-.+|+.++.....+. ....|.++.|-.+..++|++- ...++|||- .|..++.
T Consensus 130 FGPY~~~ytrnG-rhlllgGrKGHlAa~Dw~t~~L~~Ei~-v~Etv~Dv~~LHneq~~AVAQ-K~y~yvYD~-~GtElHC 205 (545)
T KOG1272|consen 130 FGPYHLDYTRNG-RHLLLGGRKGHLAAFDWVTKKLHFEIN-VMETVRDVTFLHNEQFFAVAQ-KKYVYVYDN-NGTELHC 205 (545)
T ss_pred cCCeeeeecCCc-cEEEecCCccceeeeecccceeeeeee-hhhhhhhhhhhcchHHHHhhh-hceEEEecC-CCcEEee
Confidence 345778899998 889999999999999999988887776 456789999999998888874 568999994 6777777
Q ss_pred EeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCc
Q 001462 96 LTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGK 175 (1074)
Q Consensus 96 l~~h~~~VtsLafSPdg~~LaSgS~DGsI~IWDi~tg~~v~~l~~h~~~VtsLafSPdG~~LaSgs~DGsI~VWDl~tgk 175 (1074)
++. ...|..+.|.|..-.|++++..|.+..-|+..|+.+..+....+.+..++-+|.+-.+-+|..+|+|.+|.....+
T Consensus 206 lk~-~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~ske 284 (545)
T KOG1272|consen 206 LKR-HIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKE 284 (545)
T ss_pred hhh-cCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcc
Confidence 774 4568899999998889999999999999999999999988788889999999988889999999999999999999
Q ss_pred eEEEeeecCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCCcEEEeeCCCCCCeEEEEEecCCCEEEEEECCcEEEEE
Q 001462 176 LLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGFDDNLKVYS 253 (1074)
Q Consensus 176 ~v~~~~~h~g~ItsLafSPdg~lLaTGS~DGtI~IWDl~tg~~i~t~~~~~~~ItsIafSPDG~~LasGsd~~I~Vwd 253 (1074)
++..+.+|.++|.+|++.++|.|+++.+.|..++|||++....+.++.. ..+...++||..| .|+++..+.+.||.
T Consensus 285 PLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~Sqkg-lLA~~~G~~v~iw~ 360 (545)
T KOG1272|consen 285 PLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQKG-LLALSYGDHVQIWK 360 (545)
T ss_pred hHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec-CCCcccccccccc-ceeeecCCeeeeeh
Confidence 9988999999999999999999999999999999999999887766655 4556788888654 57777778889985
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.3e-13 Score=158.96 Aligned_cols=219 Identities=20% Similarity=0.292 Sum_probs=167.7
Q ss_pred CceEEEEecCCCCEEEEEEecCCCcEEEEEECCCeEEEEECCC------C----ceEEEeeCCCCCeEEEEEcCCCCEEE
Q 001462 5 GYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGK------P----TALMSLCGLSSPVDSVAFDSAEVLVL 74 (1074)
Q Consensus 5 G~~v~~L~gHs~~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t------~----k~l~sl~~hs~~ItsLafSpdg~~La 74 (1074)
-+++.+|.+|.++|.|+++.+.+ ..+++|+.||+|+.|++.. . .....+.+|...|+.+++|.....|+
T Consensus 334 ~epi~tfraH~gPVl~v~v~~n~-~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Ll 412 (577)
T KOG0642|consen 334 VEPILTFRAHEGPVLCVVVPSNG-EHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLL 412 (577)
T ss_pred eeeeEEEecccCceEEEEecCCc-eEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeeccccccee
Confidence 45788999999999999999998 8899999999999996531 1 23446789999999999999999999
Q ss_pred EEEcCCeEEEEEcCCCeeEEEEeCC--CCCeEEEEEcCCC-CEEEEEECCCeEEEEECCCCeEEEEEeC-------CCCC
Q 001462 75 AGASTGVIKLWDLEESKMVRTLTGH--KSNCTAVEFHPFG-EFFASGCMDTNLKIWDIRKKGCIHTYKG-------HTRG 144 (1074)
Q Consensus 75 tGs~DG~I~VWDl~tgk~i~tl~~h--~~~VtsLafSPdg-~~LaSgS~DGsI~IWDi~tg~~v~~l~~-------h~~~ 144 (1074)
+++.||++++|+...... .++... .+.-..+.|-... ...++...-+.-.++++..+..+..+.. ....
T Consensus 413 scs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~ 491 (577)
T KOG0642|consen 413 SCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQ 491 (577)
T ss_pred eecCCceEEeeccCCcCc-cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCc
Confidence 999999999999876655 333322 2223445554322 2222322334344444444443333321 1234
Q ss_pred eEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeeecCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCCcEEEeeCC
Q 001462 145 INTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRP 224 (1074)
Q Consensus 145 VtsLafSPdG~~LaSgs~DGsI~VWDl~tgk~v~~~~~h~g~ItsLafSPdg~lLaTGS~DGtI~IWDl~tg~~i~t~~~ 224 (1074)
+..+.++|.+.+.+++..|+.|+++|..++++++....|...++++++.|+|-+|++|+.||.+++|.+....++.....
T Consensus 492 in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~ 571 (577)
T KOG0642|consen 492 INKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTA 571 (577)
T ss_pred cceEEecCCCCeeEecccCCceecccccccccchheeeccceecceeecCCCceEEeecCCceeehhhccchheeecccc
Confidence 67889999999999999999999999999999999999999999999999999999999999999999987766665544
Q ss_pred C
Q 001462 225 E 225 (1074)
Q Consensus 225 ~ 225 (1074)
|
T Consensus 572 ~ 572 (577)
T KOG0642|consen 572 H 572 (577)
T ss_pred c
Confidence 4
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=9.1e-12 Score=147.07 Aligned_cols=233 Identities=13% Similarity=0.047 Sum_probs=160.7
Q ss_pred CeEEEEEcCCCeeEEEEeCCCCCeEEEEEcCCCCEEEEEEC---CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCE
Q 001462 80 GVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCM---DTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRW 156 (1074)
Q Consensus 80 G~I~VWDl~tgk~i~tl~~h~~~VtsLafSPdg~~LaSgS~---DGsI~IWDi~tg~~v~~l~~h~~~VtsLafSPdG~~ 156 (1074)
..|.+||.. +...+.+..+...+.+..|+|||+.|+..+. +..|++||+.++... .+..+.+.+...+|+|||+.
T Consensus 182 ~~l~~~d~d-g~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~ 259 (435)
T PRK05137 182 KRLAIMDQD-GANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRK 259 (435)
T ss_pred eEEEEECCC-CCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCE
Confidence 378899985 4444566678889999999999999888753 468999999887653 34445566788999999998
Q ss_pred EEE-EECCC--eEEEEECCCCceEEEeeecCCCeEEEEEcCCCcEEEEEeC-CC--eEEEEECCCCcEEEeeCCCCCCeE
Q 001462 157 VVS-GGFDN--VVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSA-DR--TVKFWDLETFELIGSTRPEVTGVH 230 (1074)
Q Consensus 157 LaS-gs~DG--sI~VWDl~tgk~v~~~~~h~g~ItsLafSPdg~lLaTGS~-DG--tI~IWDl~tg~~i~t~~~~~~~It 230 (1074)
|+. .+.+| .|++||+.++... .+..+.+......|+|||+.|+..+. +| .|++||+..++.. .+....+.+.
T Consensus 260 la~~~~~~g~~~Iy~~d~~~~~~~-~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~-~lt~~~~~~~ 337 (435)
T PRK05137 260 VVMSLSQGGNTDIYTMDLRSGTTT-RLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPR-RISFGGGRYS 337 (435)
T ss_pred EEEEEecCCCceEEEEECCCCceE-EccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeE-EeecCCCccc
Confidence 764 44444 5888899877654 34445566778999999998887764 33 6888898766543 3333344567
Q ss_pred EEEEecCCCEEEEEEC--C--cEEEEEecCCeeeeccccCCceeeEEEecCCCEEEEEECC------CeEEEEEcCCCce
Q 001462 231 AITFHPDGRTLFSGFD--D--NLKVYSWEPVICHDSVDMGWSTLGDLCINDGKLLGCSFYR------NSVGIWVADVSHV 300 (1074)
Q Consensus 231 sIafSPDG~~LasGsd--~--~I~Vwd~~s~~~~~~l~~~~s~~~~l~spDGklLAsgs~D------GsV~IWDld~~~l 300 (1074)
...|+|||++|+.... + .|.+|+.+.... ..+...+......|+|||++|+..+.+ ..|.+++++.+..
T Consensus 338 ~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~ 416 (435)
T PRK05137 338 TPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILTSGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE 416 (435)
T ss_pred CeEECCCCCEEEEEEcCCCceEEEEEECCCCce-EeccCCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCce
Confidence 7899999999987542 2 366666644332 223333445567788999998876543 2567777766554
Q ss_pred eeeecCCCCCCCCceeEEEEcCC
Q 001462 301 EPYGVGAPEPDQSICTEVKFNPP 323 (1074)
Q Consensus 301 ~~~~~~~~~~~~~~ItsVaFSPD 323 (1074)
..+. ..+.+...+|+|.
T Consensus 417 ~~l~------~~~~~~~p~Wsp~ 433 (435)
T PRK05137 417 REVP------TPGDASDPAWSPL 433 (435)
T ss_pred EEcc------CCCCccCcccCCC
Confidence 3322 1334677889884
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.7e-12 Score=143.65 Aligned_cols=273 Identities=15% Similarity=0.200 Sum_probs=194.6
Q ss_pred EeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCC------CeeEEEEe-CCCCCeEEEEEcCCCCEEEEEECCCeEE
Q 001462 53 SLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEE------SKMVRTLT-GHKSNCTAVEFHPFGEFFASGCMDTNLK 125 (1074)
Q Consensus 53 sl~~hs~~ItsLafSpdg~~LatGs~DG~I~VWDl~t------gk~i~tl~-~h~~~VtsLafSPdg~~LaSgS~DGsI~ 125 (1074)
.+.+|.+.|.++.|+.++++|++|+.|..+.+|+++. .+++.... .|...|.|++|...+.++++|+.+|+|.
T Consensus 51 D~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI 130 (609)
T KOG4227|consen 51 DVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVI 130 (609)
T ss_pred hhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeE
Confidence 3568999999999999999999999999999999863 34454443 3558999999999999999999999999
Q ss_pred EEECCCCeEEEEEeC--CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCc-eEEEe--eecCCCeEEEEEcCC-CcEE
Q 001462 126 IWDIRKKGCIHTYKG--HTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGK-LLHDF--KFHEGHIRSIDFHPL-EFLL 199 (1074)
Q Consensus 126 IWDi~tg~~v~~l~~--h~~~VtsLafSPdG~~LaSgs~DGsI~VWDl~tgk-~v~~~--~~h~g~ItsLafSPd-g~lL 199 (1074)
..|+.+.+.+..+.. ..+.|+.+..+|..+.|++.+.+|.|.+||.+... ....+ .......+.+.|+|- -.+|
T Consensus 131 ~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li 210 (609)
T KOG4227|consen 131 KHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALI 210 (609)
T ss_pred eeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeE
Confidence 999999988877752 23489999999998999999999999999998654 22111 123345788889996 4678
Q ss_pred EEEeCCCeEEEEECCCCcE-EEe------eCCCCCCeEEEEEecCCCEEEEEECC-cEEEEEecCCeee-ecccc---CC
Q 001462 200 ATGSADRTVKFWDLETFEL-IGS------TRPEVTGVHAITFHPDGRTLFSGFDD-NLKVYSWEPVICH-DSVDM---GW 267 (1074)
Q Consensus 200 aTGS~DGtI~IWDl~tg~~-i~t------~~~~~~~ItsIafSPDG~~LasGsd~-~I~Vwd~~s~~~~-~~l~~---~~ 267 (1074)
++.+..+-+-+||.+.... +.. +......-.++.|+|.|..+.+-..+ .-.+||+-...|. ..+++ ++
T Consensus 211 ~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~GY 290 (609)
T KOG4227|consen 211 LVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNPNGY 290 (609)
T ss_pred EeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccCCCCcc
Confidence 8888889999999985432 111 11111123567899999888775333 3457777664432 22221 11
Q ss_pred ---ceeeEEEecCCCEEEEEECCCeEEEEEcCC----------Cc---------eeeeecCCCCCCCCceeEEEEcCCCC
Q 001462 268 ---STLGDLCINDGKLLGCSFYRNSVGIWVADV----------SH---------VEPYGVGAPEPDQSICTEVKFNPPGS 325 (1074)
Q Consensus 268 ---s~~~~l~spDGklLAsgs~DGsV~IWDld~----------~~---------l~~~~~~~~~~~~~~ItsVaFSPDGs 325 (1074)
..+..+++-+..-+++|+.+-.|+||.+.. ++ +..-.+....+|.+-+..|.|+|-..
T Consensus 291 ~N~~T~KS~~F~~D~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~ 370 (609)
T KOG4227|consen 291 CNIKTIKSMTFIDDYTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNN 370 (609)
T ss_pred eeeeeeeeeeeecceeeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceeecCCcc
Confidence 123334556667799999999999998721 11 11111122357888899999999555
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.2e-11 Score=146.01 Aligned_cols=214 Identities=14% Similarity=0.087 Sum_probs=152.7
Q ss_pred CeEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEEEEc---CCeEEEEEcCCCeeEEEEeCCCCCeEEEEEcCCCCE
Q 001462 38 QKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGAS---TGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEF 114 (1074)
Q Consensus 38 GtV~IWDl~t~k~l~sl~~hs~~ItsLafSpdg~~LatGs~---DG~I~VWDl~tgk~i~tl~~h~~~VtsLafSPdg~~ 114 (1074)
..|.+||.. +.....+..+...+.+..|+|||+.|+..+. +..|++||+.+++.. .+..+.+.+....|+|||+.
T Consensus 182 ~~l~~~d~d-g~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~ 259 (435)
T PRK05137 182 KRLAIMDQD-GANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRK 259 (435)
T ss_pred eEEEEECCC-CCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCE
Confidence 378888874 4445566678889999999999999888764 468999999887653 44456667788999999998
Q ss_pred EEEE-ECCC--eEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEEC-C--CeEEEEECCCCceEEEeeecCCCeE
Q 001462 115 FASG-CMDT--NLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGF-D--NVVKVWDLTAGKLLHDFKFHEGHIR 188 (1074)
Q Consensus 115 LaSg-S~DG--sI~IWDi~tg~~v~~l~~h~~~VtsLafSPdG~~LaSgs~-D--GsI~VWDl~tgk~v~~~~~h~g~It 188 (1074)
|+.. +.+| .|++||+.++.. ..+..+........|+|||++|+..+. + ..|++||+..+... .+..+.+.+.
T Consensus 260 la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~-~lt~~~~~~~ 337 (435)
T PRK05137 260 VVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPR-RISFGGGRYS 337 (435)
T ss_pred EEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeE-EeecCCCccc
Confidence 7644 4444 488889887765 445545555678999999999887764 3 36889998766543 3333455567
Q ss_pred EEEEcCCCcEEEEEeCC---CeEEEEECCCCcEEEeeCCCCCCeEEEEEecCCCEEEEEEC-------CcEEEEEecCC
Q 001462 189 SIDFHPLEFLLATGSAD---RTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGFD-------DNLKVYSWEPV 257 (1074)
Q Consensus 189 sLafSPdg~lLaTGS~D---GtI~IWDl~tg~~i~t~~~~~~~ItsIafSPDG~~LasGsd-------~~I~Vwd~~s~ 257 (1074)
...|+|+|++|+....+ ..|.+||+..+.. ..+.. ...+..+.|+|||++|+.... ..+++++++..
T Consensus 338 ~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt~-~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~ 414 (435)
T PRK05137 338 TPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILTS-GFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGR 414 (435)
T ss_pred CeEECCCCCEEEEEEcCCCceEEEEEECCCCce-EeccC-CCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCC
Confidence 78999999999887643 3688899865543 22322 234678899999999887432 13555565443
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.5e-10 Score=132.77 Aligned_cols=286 Identities=16% Similarity=0.229 Sum_probs=188.4
Q ss_pred EEEEECC----CeEEEEEC--CCCceEEEee--CCCCCeEEEEEcCCCCEEEEEEc----CCeEEEEEcCCC--e--eEE
Q 001462 31 LITGGDD----QKVNLWAI--GKPTALMSLC--GLSSPVDSVAFDSAEVLVLAGAS----TGVIKLWDLEES--K--MVR 94 (1074)
Q Consensus 31 LaTGs~D----GtV~IWDl--~t~k~l~sl~--~hs~~ItsLafSpdg~~LatGs~----DG~I~VWDl~tg--k--~i~ 94 (1074)
+++|+.. +.|++|++ .+++. ..+. ........+++++++++|++... +|.|..|++... + .+.
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l-~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~ 80 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTL-TLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLN 80 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEE-EEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCc-eEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEee
Confidence 4556555 68999888 33332 2221 23445677999999999999877 478999988763 3 233
Q ss_pred EEeCCCCCeEEEEEcCCCCEEEEEEC-CCeEEEEECCC-CeEEEE---Ee----------CCCCCeEEEEEcCCCCEEEE
Q 001462 95 TLTGHKSNCTAVEFHPFGEFFASGCM-DTNLKIWDIRK-KGCIHT---YK----------GHTRGINTIRFTPDGRWVVS 159 (1074)
Q Consensus 95 tl~~h~~~VtsLafSPdg~~LaSgS~-DGsI~IWDi~t-g~~v~~---l~----------~h~~~VtsLafSPdG~~LaS 159 (1074)
........-..++++|++++|+++.. +|.|.+|++.. +..... +. .......++.|+|+|+++++
T Consensus 81 ~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v 160 (345)
T PF10282_consen 81 SVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYV 160 (345)
T ss_dssp EEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEE
T ss_pred eeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEE
Confidence 33334455678999999999999875 89999999986 333222 21 12345789999999999888
Q ss_pred EEC-CCeEEEEECCCCc--eE--EEee-ecCCCeEEEEEcCCCcEEEEEe-CCCeEEEEECC--CCcE--EEeeCCC---
Q 001462 160 GGF-DNVVKVWDLTAGK--LL--HDFK-FHEGHIRSIDFHPLEFLLATGS-ADRTVKFWDLE--TFEL--IGSTRPE--- 225 (1074)
Q Consensus 160 gs~-DGsI~VWDl~tgk--~v--~~~~-~h~g~ItsLafSPdg~lLaTGS-~DGtI~IWDl~--tg~~--i~t~~~~--- 225 (1074)
... ...|.+|++.... +. ..+. ......+.+.|+|+++++++.. .++.|.+|++. .+.. +..+...
T Consensus 161 ~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~ 240 (345)
T PF10282_consen 161 PDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEG 240 (345)
T ss_dssp EETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETT
T ss_pred EecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeecccc
Confidence 764 3479999987654 32 2222 2344579999999999887776 46789999988 4432 2222111
Q ss_pred ---CCCeEEEEEecCCCEEEEEE--CCcEEEEEecCC----eeeecccc-CCceeeEEEecCCCEEEEEE-CCCeEEEEE
Q 001462 226 ---VTGVHAITFHPDGRTLFSGF--DDNLKVYSWEPV----ICHDSVDM-GWSTLGDLCINDGKLLGCSF-YRNSVGIWV 294 (1074)
Q Consensus 226 ---~~~ItsIafSPDG~~LasGs--d~~I~Vwd~~s~----~~~~~l~~-~~s~~~~l~spDGklLAsgs-~DGsV~IWD 294 (1074)
......|+++|||++|+++. .+.|.+|+++.. .....+.. +..+....+.++|++|+++. .++.|.+|+
T Consensus 241 ~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~ 320 (345)
T PF10282_consen 241 FTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFD 320 (345)
T ss_dssp SCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEE
T ss_pred ccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEE
Confidence 12578899999999999975 456999999532 23333443 44577888889999999887 567999998
Q ss_pred cC--CCceeeeecCCCCCCCCceeEEEE
Q 001462 295 AD--VSHVEPYGVGAPEPDQSICTEVKF 320 (1074)
Q Consensus 295 ld--~~~l~~~~~~~~~~~~~~ItsVaF 320 (1074)
++ .+.+..... ........||.|
T Consensus 321 ~d~~tG~l~~~~~---~~~~~~p~ci~f 345 (345)
T PF10282_consen 321 IDPDTGKLTPVGS---SVPIPSPVCIVF 345 (345)
T ss_dssp EETTTTEEEEEEE---EEESSSEEEEEE
T ss_pred EeCCCCcEEEecc---cccCCCCEEEeC
Confidence 75 455554432 122345667766
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=4.2e-12 Score=149.86 Aligned_cols=226 Identities=12% Similarity=0.075 Sum_probs=157.3
Q ss_pred cCceEEEEecCCCCEEEEEEecCCCcEEEEEEC---CCeEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEE-EEcC
Q 001462 4 RGYKLQEFVAHSANVNCISIGKKACRFLITGGD---DQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLA-GAST 79 (1074)
Q Consensus 4 tG~~v~~L~gHs~~Vt~IafSPdg~~lLaTGs~---DGtV~IWDl~t~k~l~sl~~hs~~ItsLafSpdg~~Lat-Gs~D 79 (1074)
.|...+.+..|...+.+.+|+||| +.|+..+. +..|++||+.+++.. .+..+.....++.|+|+|+.|+. .+.+
T Consensus 192 ~g~~~~~lt~~~~~v~~p~wSpDg-~~la~~s~~~~~~~l~~~dl~~g~~~-~l~~~~g~~~~~~~SpDG~~l~~~~s~~ 269 (433)
T PRK04922 192 DGYNPQTILRSAEPILSPAWSPDG-KKLAYVSFERGRSAIYVQDLATGQRE-LVASFRGINGAPSFSPDGRRLALTLSRD 269 (433)
T ss_pred CCCCceEeecCCCccccccCCCCC-CEEEEEecCCCCcEEEEEECCCCCEE-EeccCCCCccCceECCCCCEEEEEEeCC
Confidence 345566677788889999999999 55555543 346999999777643 33334445567899999997764 4455
Q ss_pred C--eEEEEEcCCCeeEEEEeCCCCCeEEEEEcCCCCEEEEEEC-CC--eEEEEECCCCeEEEEEeCCCCCeEEEEEcCCC
Q 001462 80 G--VIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCM-DT--NLKIWDIRKKGCIHTYKGHTRGINTIRFTPDG 154 (1074)
Q Consensus 80 G--~I~VWDl~tgk~i~tl~~h~~~VtsLafSPdg~~LaSgS~-DG--sI~IWDi~tg~~v~~l~~h~~~VtsLafSPdG 154 (1074)
| .|++||+.+++. ..+..+......++|+|||++|+.++. +| .|+++|+.++.... +..+......++|+|||
T Consensus 270 g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~-lt~~g~~~~~~~~SpDG 347 (433)
T PRK04922 270 GNPEIYVMDLGSRQL-TRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER-LTFQGNYNARASVSPDG 347 (433)
T ss_pred CCceEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE-eecCCCCccCEEECCCC
Confidence 5 699999988765 345555555678899999998887764 34 47778877665433 32233345578999999
Q ss_pred CEEEEEECCC---eEEEEECCCCceEEEeeecCCCeEEEEEcCCCcEEEEEeCC---CeEEEEECCCCcEEEeeCCCCCC
Q 001462 155 RWVVSGGFDN---VVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSAD---RTVKFWDLETFELIGSTRPEVTG 228 (1074)
Q Consensus 155 ~~LaSgs~DG---sI~VWDl~tgk~v~~~~~h~g~ItsLafSPdg~lLaTGS~D---GtI~IWDl~tg~~i~t~~~~~~~ 228 (1074)
++|+..+.++ .|.+||+.+++.. .+. +........|+|||++|+..+.+ +.|.+|++.. .....+..+.+.
T Consensus 348 ~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g-~~~~~l~~~~g~ 424 (433)
T PRK04922 348 KKIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDG-RVRQRLVSADGE 424 (433)
T ss_pred CEEEEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCC-CceEEcccCCCC
Confidence 9998765433 6999999887755 333 23344567999999988777653 4688888864 444555445566
Q ss_pred eEEEEEec
Q 001462 229 VHAITFHP 236 (1074)
Q Consensus 229 ItsIafSP 236 (1074)
+...+|+|
T Consensus 425 ~~~p~wsp 432 (433)
T PRK04922 425 VREPAWSP 432 (433)
T ss_pred CCCCccCC
Confidence 77778876
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.8e-13 Score=152.24 Aligned_cols=194 Identities=16% Similarity=0.280 Sum_probs=155.7
Q ss_pred EEEEEecCCCcEEEEEECCCeEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeeEEEEeC
Q 001462 19 NCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTG 98 (1074)
Q Consensus 19 t~IafSPdg~~lLaTGs~DGtV~IWDl~t~k~l~sl~~hs~~ItsLafSpdg~~LatGs~DG~I~VWDl~tgk~i~tl~~ 98 (1074)
.+++|+.+| ..|++|+.||++++|++.....+.....|...|.++.|+|||++|++-+.| ...||+.++|..+.....
T Consensus 148 k~vaf~~~g-s~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~ 225 (398)
T KOG0771|consen 148 KVVAFNGDG-SKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTP 225 (398)
T ss_pred eEEEEcCCC-CEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCC
Confidence 789999998 789999999999999998888888888999999999999999999999999 899999999976665542
Q ss_pred --CCCCeEEEEEcCCC---CEEEEE--ECCCeEEEEECCCCeE-----EEEEeCCCCCeEEEEEcCCCCEEEEEECCCeE
Q 001462 99 --HKSNCTAVEFHPFG---EFFASG--CMDTNLKIWDIRKKGC-----IHTYKGHTRGINTIRFTPDGRWVVSGGFDNVV 166 (1074)
Q Consensus 99 --h~~~VtsLafSPdg---~~LaSg--S~DGsI~IWDi~tg~~-----v~~l~~h~~~VtsLafSPdG~~LaSgs~DGsI 166 (1074)
.......+.|+.++ .+++.+ ..-+.|..||+....- ..........|.+++.+.+|++++.|+.||.|
T Consensus 226 ~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsV 305 (398)
T KOG0771|consen 226 FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSV 305 (398)
T ss_pred cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcE
Confidence 23446678888776 333333 3345677766543221 11111233469999999999999999999999
Q ss_pred EEEECCCCceEEEee-ecCCCeEEEEEcCCCcEEEEEeCCCeEEEEECC
Q 001462 167 KVWDLTAGKLLHDFK-FHEGHIRSIDFHPLEFLLATGSADRTVKFWDLE 214 (1074)
Q Consensus 167 ~VWDl~tgk~v~~~~-~h~g~ItsLafSPdg~lLaTGS~DGtI~IWDl~ 214 (1074)
.|++..+.+.++.++ .|.+.|+.+.|+|+.+++++.+.|..+.+..+.
T Consensus 306 ai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~ 354 (398)
T KOG0771|consen 306 AIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLA 354 (398)
T ss_pred EEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEe
Confidence 999998888776654 799999999999999999998888888877665
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.49 E-value=4.4e-12 Score=146.30 Aligned_cols=280 Identities=10% Similarity=0.084 Sum_probs=210.0
Q ss_pred cCCCCEEEEEEecCCCcEEEEEECCCeEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCCee
Q 001462 13 AHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKM 92 (1074)
Q Consensus 13 gHs~~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~k~l~sl~~hs~~ItsLafSpdg~~LatGs~DG~I~VWDl~tgk~ 92 (1074)
.|...-+.|..+|||..++|+|..--.|++||+........-......|.-.-++.|-..++.-..|..|.+..- .|..
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak-~G~h 127 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAK-YGRH 127 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhh-cCee
Confidence 577788999999999778889999999999999765544333323344554455555555566666777766542 2221
Q ss_pred EEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC
Q 001462 93 VRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLT 172 (1074)
Q Consensus 93 i~tl~~h~~~VtsLafSPdg~~LaSgS~DGsI~IWDi~tg~~v~~l~~h~~~VtsLafSPdG~~LaSgs~DGsI~VWDl~ 172 (1074)
..+. -.....+++++.-.--|++++....|+-+++..|..+..+....+.++++..++.+.+|++|+.+|.|-+||.+
T Consensus 128 -y~~R-IP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR 205 (703)
T KOG2321|consen 128 -YRTR-IPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPR 205 (703)
T ss_pred -eeee-cCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecch
Confidence 1111 22334567776544445555566779999999999999998888899999999999999999999999999998
Q ss_pred CCceEEEeee------cCC-----CeEEEEEcCCCcEEEEEeCCCeEEEEECCCCcEEEee-CCCCCCeEEEEEecC--C
Q 001462 173 AGKLLHDFKF------HEG-----HIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGST-RPEVTGVHAITFHPD--G 238 (1074)
Q Consensus 173 tgk~v~~~~~------h~g-----~ItsLafSPdg~lLaTGS~DGtI~IWDl~tg~~i~t~-~~~~~~ItsIafSPD--G 238 (1074)
+...+..+.. |.+ .|+++.|+.+|-.+++|..+|.+.|||+++.+++..- .....+|..+.|.+. +
T Consensus 206 ~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q 285 (703)
T KOG2321|consen 206 DKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQ 285 (703)
T ss_pred hhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCC
Confidence 8766655542 333 3999999999999999999999999999987765443 344567999999775 5
Q ss_pred CEEEEEECCcEEEEEecCCeeeeccccCCceeeEEEecCCCEEEEEECCCeEEEEEc
Q 001462 239 RTLFSGFDDNLKVYSWEPVICHDSVDMGWSTLGDLCINDGKLLGCSFYRNSVGIWVA 295 (1074)
Q Consensus 239 ~~LasGsd~~I~Vwd~~s~~~~~~l~~~~s~~~~l~spDGklLAsgs~DGsV~IWDl 295 (1074)
..+++.....++|||-..+.....+.........+++|++.+++++..++.+..|-+
T Consensus 286 ~~v~S~Dk~~~kiWd~~~Gk~~asiEpt~~lND~C~~p~sGm~f~Ane~~~m~~yyi 342 (703)
T KOG2321|consen 286 NKVVSMDKRILKIWDECTGKPMASIEPTSDLNDFCFVPGSGMFFTANESSKMHTYYI 342 (703)
T ss_pred ceEEecchHHhhhcccccCCceeeccccCCcCceeeecCCceEEEecCCCcceeEEc
Confidence 667777667799999999888777776666556666799999999998888887755
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.48 E-value=8.4e-12 Score=138.44 Aligned_cols=234 Identities=17% Similarity=0.220 Sum_probs=180.1
Q ss_pred CCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeeEEEEeCCCCCeEEEEEcCCCCEEEEEECC--CeEEEEECCCCeEEE
Q 001462 59 SPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMD--TNLKIWDIRKKGCIH 136 (1074)
Q Consensus 59 ~~ItsLafSpdg~~LatGs~DG~I~VWDl~tgk~i~tl~~h~~~VtsLafSPdg~~LaSgS~D--GsI~IWDi~tg~~v~ 136 (1074)
..+..+.|+.+...|..|+.|| .++|.................|..+-|+ ...+|..+.+ ..+++++++.+..+.
T Consensus 6 ~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFS--SSLvaiV~~~qpr~Lkv~~~Kk~~~IC 82 (391)
T KOG2110|consen 6 PTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFS--SSLVAIVSIKQPRKLKVVHFKKKTTIC 82 (391)
T ss_pred cceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeecc--cceeEEEecCCCceEEEEEcccCceEE
Confidence 3566677998999999999998 6788876654433333334456667777 4555555544 459999999888888
Q ss_pred EEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeee---cCCCeEEEEEcCCCcEEEEEe--CCCeEEEE
Q 001462 137 TYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKF---HEGHIRSIDFHPLEFLLATGS--ADRTVKFW 211 (1074)
Q Consensus 137 ~l~~h~~~VtsLafSPdG~~LaSgs~DGsI~VWDl~tgk~v~~~~~---h~g~ItsLafSPdg~lLaTGS--~DGtI~IW 211 (1074)
.+. ....|.++.++.+ .|+++-.+ .|+|||+++.++++++.. +...+.++.+++.+.+|+.-+ ..|.|.+|
T Consensus 83 e~~-fpt~IL~VrmNr~--RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~ 158 (391)
T KOG2110|consen 83 EIF-FPTSILAVRMNRK--RLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLF 158 (391)
T ss_pred EEe-cCCceEEEEEccc--eEEEEEcc-cEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEE
Confidence 776 4567999998743 45555444 499999999999988764 344466666776677887654 35899999
Q ss_pred ECCCCcEEEeeCCCCCCeEEEEEecCCCEEEEEECCc--EEEEEecCCeeeeccccCC---ceeeEEEecCCCEEEEEEC
Q 001462 212 DLETFELIGSTRPEVTGVHAITFHPDGRTLFSGFDDN--LKVYSWEPVICHDSVDMGW---STLGDLCINDGKLLGCSFY 286 (1074)
Q Consensus 212 Dl~tg~~i~t~~~~~~~ItsIafSPDG~~LasGsd~~--I~Vwd~~s~~~~~~l~~~~---s~~~~l~spDGklLAsgs~ 286 (1074)
|+.+.+.+..+..|.+.+.+++|+++|.+||++++.+ |+||....+.....+.-+. .+....|++|+.+|++.+.
T Consensus 159 d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~ 238 (391)
T KOG2110|consen 159 DTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSN 238 (391)
T ss_pred EcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecC
Confidence 9999999999999999999999999999999998877 9999998887776665544 3456667799999999999
Q ss_pred CCeEEEEEcCCCc
Q 001462 287 RNSVGIWVADVSH 299 (1074)
Q Consensus 287 DGsV~IWDld~~~ 299 (1074)
.++|+||.++...
T Consensus 239 TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 239 TETVHIFKLEKVS 251 (391)
T ss_pred CCeEEEEEecccc
Confidence 9999999986443
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.48 E-value=2e-13 Score=156.08 Aligned_cols=215 Identities=23% Similarity=0.368 Sum_probs=165.3
Q ss_pred eEEEEecCCCCEEEEEEecCCCcEEEEEECCCeEEEEECCCCceEEEe-eCCCCCeEEEEEcC--CCCEEEEEEcCCeEE
Q 001462 7 KLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSL-CGLSSPVDSVAFDS--AEVLVLAGASTGVIK 83 (1074)
Q Consensus 7 ~v~~L~gHs~~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~k~l~sl-~~hs~~ItsLafSp--dg~~LatGs~DG~I~ 83 (1074)
+-++|.||++.|+|+.|+.+| .+|++|+.|-.+.|||....+.++.+ .+|...|.++.|-| +.+.+++|..|..|+
T Consensus 42 lE~eL~GH~GCVN~LeWn~dG-~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~ 120 (758)
T KOG1310|consen 42 LEAELTGHTGCVNCLEWNADG-ELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIK 120 (758)
T ss_pred hhhhhccccceecceeecCCC-CEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEE
Confidence 345789999999999999999 89999999999999999888877776 58999999999998 567899999999999
Q ss_pred EEEcCCC----------eeEEEEeCCCCCeEEEEEcCCC-CEEEEEECCCeEEEEECCCCeE-------E---EEEeCCC
Q 001462 84 LWDLEES----------KMVRTLTGHKSNCTAVEFHPFG-EFFASGCMDTNLKIWDIRKKGC-------I---HTYKGHT 142 (1074)
Q Consensus 84 VWDl~tg----------k~i~tl~~h~~~VtsLafSPdg-~~LaSgS~DGsI~IWDi~tg~~-------v---~~l~~h~ 142 (1074)
++|+... .....+.+|...|.-++..|++ +.|.+++.||.|+-||++.... . ..+...-
T Consensus 121 lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~l 200 (758)
T KOG1310|consen 121 LFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQL 200 (758)
T ss_pred EEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhh
Confidence 9999742 2345566788889999999988 7899999999999999986221 1 1111122
Q ss_pred CCeEEEEEcC-CCCEEEEEECCCeEEEEECCC--------Cc----------eEEEee-ecC-----------CCeEEEE
Q 001462 143 RGINTIRFTP-DGRWVVSGGFDNVVKVWDLTA--------GK----------LLHDFK-FHE-----------GHIRSID 191 (1074)
Q Consensus 143 ~~VtsLafSP-dG~~LaSgs~DGsI~VWDl~t--------gk----------~v~~~~-~h~-----------g~ItsLa 191 (1074)
-...|+..+| +..+|++|+.|-..++||.+. +. ++.-|. +|- ..++.+.
T Consensus 201 ielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vt 280 (758)
T KOG1310|consen 201 IELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVT 280 (758)
T ss_pred heeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEE
Confidence 3467899999 456889999999999999432 11 122221 111 1256678
Q ss_pred EcCCCcEEEEEeCCCeEEEEECCCCcEEEee
Q 001462 192 FHPLEFLLATGSADRTVKFWDLETFELIGST 222 (1074)
Q Consensus 192 fSPdg~lLaTGS~DGtI~IWDl~tg~~i~t~ 222 (1074)
|+|+|..|++.-....|+++|+..++....+
T Consensus 281 fnpNGtElLvs~~gEhVYlfdvn~~~~~~~y 311 (758)
T KOG1310|consen 281 FNPNGTELLVSWGGEHVYLFDVNEDKSPTPY 311 (758)
T ss_pred ECCCCcEEEEeeCCeEEEEEeecCCCCceee
Confidence 9999987777666678999999877655443
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.47 E-value=4.6e-13 Score=150.44 Aligned_cols=194 Identities=20% Similarity=0.312 Sum_probs=153.0
Q ss_pred EEEEEcCCCCEEEEEEcCCeEEEEEcCCCeeEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEe--
Q 001462 62 DSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYK-- 139 (1074)
Q Consensus 62 tsLafSpdg~~LatGs~DG~I~VWDl~tgk~i~tl~~h~~~VtsLafSPdg~~LaSgS~DGsI~IWDi~tg~~v~~l~-- 139 (1074)
.+++|+.+|..|++|+.||+++||++.+...+.....|...|.++.|+|||++|++-+.| ...||+..++..+....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~ 226 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF 226 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence 678999999999999999999999999888888888899999999999999999999999 89999999997665553
Q ss_pred CCCCCeEEEEEcCCC---CEEEE--EECCCeEEEEECCCCce-----EEEeeecCCCeEEEEEcCCCcEEEEEeCCCeEE
Q 001462 140 GHTRGINTIRFTPDG---RWVVS--GGFDNVVKVWDLTAGKL-----LHDFKFHEGHIRSIDFHPLEFLLATGSADRTVK 209 (1074)
Q Consensus 140 ~h~~~VtsLafSPdG---~~LaS--gs~DGsI~VWDl~tgk~-----v~~~~~h~g~ItsLafSPdg~lLaTGS~DGtI~ 209 (1074)
.....+..+.|+.|+ .+++. ....+.|..||+..++. ..+.......|.+++.+++|++++.|+.||.|-
T Consensus 227 ~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVa 306 (398)
T KOG0771|consen 227 SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVA 306 (398)
T ss_pred ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEE
Confidence 233456778888877 33333 33345666666543322 111112234699999999999999999999999
Q ss_pred EEECCCCcEEEee-CCCCCCeEEEEEecCCCEEEE-EECCcEEEEEecC
Q 001462 210 FWDLETFELIGST-RPEVTGVHAITFHPDGRTLFS-GFDDNLKVYSWEP 256 (1074)
Q Consensus 210 IWDl~tg~~i~t~-~~~~~~ItsIafSPDG~~Las-Gsd~~I~Vwd~~s 256 (1074)
|++..+.+.+... ..|...|+.+.|+||.++++. .++....|..+..
T Consensus 307 i~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 307 IYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred EEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 9999988877665 457788999999999999987 4566666766543
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=5.1e-12 Score=149.01 Aligned_cols=227 Identities=12% Similarity=0.058 Sum_probs=153.0
Q ss_pred cCceEEEEecCCCCEEEEEEecCCCcEEEEEEC-C--CeEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEE-EEcC
Q 001462 4 RGYKLQEFVAHSANVNCISIGKKACRFLITGGD-D--QKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLA-GAST 79 (1074)
Q Consensus 4 tG~~v~~L~gHs~~Vt~IafSPdg~~lLaTGs~-D--GtV~IWDl~t~k~l~sl~~hs~~ItsLafSpdg~~Lat-Gs~D 79 (1074)
.|...+.+..|...+.+.+|+||| +.|+..+. + ..|++||+.+++... +......+.+..|+|||+.|+. .+.+
T Consensus 184 dG~~~~~l~~~~~~v~~p~wSPDG-~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~la~~~~~~ 261 (427)
T PRK02889 184 DGQNAQSALSSPEPIISPAWSPDG-TKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRTLAVALSRD 261 (427)
T ss_pred CCCCceEeccCCCCcccceEcCCC-CEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccC
Confidence 455556677788899999999999 55555443 2 459999998876533 3334455678999999998875 5667
Q ss_pred CeEEEE--EcCCCeeEEEEeCCCCCeEEEEEcCCCCEEEEEEC-CCeEEEE--ECCCCeEEEEEeCCCCCeEEEEEcCCC
Q 001462 80 GVIKLW--DLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCM-DTNLKIW--DIRKKGCIHTYKGHTRGINTIRFTPDG 154 (1074)
Q Consensus 80 G~I~VW--Dl~tgk~i~tl~~h~~~VtsLafSPdg~~LaSgS~-DGsI~IW--Di~tg~~v~~l~~h~~~VtsLafSPdG 154 (1074)
|...|| |+..+. ...+..+...+....|+|||++|+..+. +|...+| ++..+... .+...........|+|||
T Consensus 262 g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~-~lt~~g~~~~~~~~SpDG 339 (427)
T PRK02889 262 GNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQ-RVTFTGSYNTSPRISPDG 339 (427)
T ss_pred CCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceE-EEecCCCCcCceEECCCC
Confidence 765555 554444 4555555556677899999998887654 3555555 54454432 222223334568999999
Q ss_pred CEEEEEECCC---eEEEEECCCCceEEEeeecCCCeEEEEEcCCCcEEEEEeCCC---eEEEEECCCCcEEEeeCCCCCC
Q 001462 155 RWVVSGGFDN---VVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADR---TVKFWDLETFELIGSTRPEVTG 228 (1074)
Q Consensus 155 ~~LaSgs~DG---sI~VWDl~tgk~v~~~~~h~g~ItsLafSPdg~lLaTGS~DG---tI~IWDl~tg~~i~t~~~~~~~ 228 (1074)
++|+..+.++ .|.+||+.+++...... ........|+|||..|+.++.++ .+.+.++. +.....+..+.+.
T Consensus 340 ~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~--~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~-g~~~~~l~~~~g~ 416 (427)
T PRK02889 340 KLLAYISRVGGAFKLYVQDLATGQVTALTD--TTRDESPSFAPNGRYILYATQQGGRSVLAAVSSD-GRIKQRLSVQGGD 416 (427)
T ss_pred CEEEEEEccCCcEEEEEEECCCCCeEEccC--CCCccCceECCCCCEEEEEEecCCCEEEEEEECC-CCceEEeecCCCC
Confidence 9998776554 69999998887543322 23346789999999888877544 36666764 5555555555566
Q ss_pred eEEEEEecC
Q 001462 229 VHAITFHPD 237 (1074)
Q Consensus 229 ItsIafSPD 237 (1074)
+...+|+|-
T Consensus 417 ~~~p~wsp~ 425 (427)
T PRK02889 417 VREPSWGPF 425 (427)
T ss_pred CCCCccCCC
Confidence 777788763
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.1e-11 Score=146.30 Aligned_cols=234 Identities=12% Similarity=0.039 Sum_probs=151.8
Q ss_pred CeEEEEEcCCCeeEEEEeCCCCCeEEEEEcCCCCEEEEEECC---CeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCE
Q 001462 80 GVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMD---TNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRW 156 (1074)
Q Consensus 80 G~I~VWDl~tgk~i~tl~~h~~~VtsLafSPdg~~LaSgS~D---GsI~IWDi~tg~~v~~l~~h~~~VtsLafSPdG~~ 156 (1074)
..|.+||. +|.....+..+...+.+.+|+|||+.|+..+.+ ..|++||+.++.... +....+.+.+..|+|||+.
T Consensus 176 ~~L~~~D~-dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~ 253 (427)
T PRK02889 176 YQLQISDA-DGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRT 253 (427)
T ss_pred cEEEEECC-CCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCE
Confidence 36777786 444445555677889999999999999887643 459999998887543 3333445678999999998
Q ss_pred EEE-EECCCeEEE--EECCCCceEEEeeecCCCeEEEEEcCCCcEEEEEeC-CCeEEEE--ECCCCcEEEeeCCCCCCeE
Q 001462 157 VVS-GGFDNVVKV--WDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSA-DRTVKFW--DLETFELIGSTRPEVTGVH 230 (1074)
Q Consensus 157 LaS-gs~DGsI~V--WDl~tgk~v~~~~~h~g~ItsLafSPdg~lLaTGS~-DGtI~IW--Dl~tg~~i~t~~~~~~~It 230 (1074)
|+. .+.+|...+ +|+..+. ...+..+.+......|+|||+.|+..+. +|...+| ++.++...... .......
T Consensus 254 la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt-~~g~~~~ 331 (427)
T PRK02889 254 LAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVT-FTGSYNT 331 (427)
T ss_pred EEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEe-cCCCCcC
Confidence 864 566776444 4555444 4445445555677899999998877664 3555555 44554432222 2223345
Q ss_pred EEEEecCCCEEEEEEC-C---cEEEEEecCCeeeeccccCCceeeEEEecCCCEEEEEECCC-e--EEEEEcCCCceeee
Q 001462 231 AITFHPDGRTLFSGFD-D---NLKVYSWEPVICHDSVDMGWSTLGDLCINDGKLLGCSFYRN-S--VGIWVADVSHVEPY 303 (1074)
Q Consensus 231 sIafSPDG~~LasGsd-~---~I~Vwd~~s~~~~~~l~~~~s~~~~l~spDGklLAsgs~DG-s--V~IWDld~~~l~~~ 303 (1074)
...|+|||++|+.... + .|.+|++............ ......|+|||++|+.++.++ . +.+.+++......+
T Consensus 332 ~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~~~-~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~g~~~~~l 410 (427)
T PRK02889 332 SPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALTDTT-RDESPSFAPNGRYILYATQQGGRSVLAAVSSDGRIKQRL 410 (427)
T ss_pred ceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEccCCC-CccCceECCCCCEEEEEEecCCCEEEEEEECCCCceEEe
Confidence 6889999999987543 2 3889998876654433322 234567889999988877544 3 44445543322222
Q ss_pred ecCCCCCCCCceeEEEEcCC
Q 001462 304 GVGAPEPDQSICTEVKFNPP 323 (1074)
Q Consensus 304 ~~~~~~~~~~~ItsVaFSPD 323 (1074)
....+.+...+|+|.
T Consensus 411 -----~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 411 -----SVQGGDVREPSWGPF 425 (427)
T ss_pred -----ecCCCCCCCCccCCC
Confidence 223456777899884
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.3e-13 Score=163.32 Aligned_cols=260 Identities=18% Similarity=0.281 Sum_probs=193.2
Q ss_pred EEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeeEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC
Q 001462 51 LMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIR 130 (1074)
Q Consensus 51 l~sl~~hs~~ItsLafSpdg~~LatGs~DG~I~VWDl~tgk~i~tl~~h~~~VtsLafSPdg~~LaSgS~DGsI~IWDi~ 130 (1074)
+..+.+|...|+|+.|...|.++++|+.|..++||..+++.+.....+|.+.|+.++.+.++-++++++.|..|++|-+.
T Consensus 183 ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~ 262 (1113)
T KOG0644|consen 183 IKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLP 262 (1113)
T ss_pred HHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecC
Confidence 44567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEE---ee-ecCCCeEEEEEcCCCcEEEEEeCCC
Q 001462 131 KKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHD---FK-FHEGHIRSIDFHPLEFLLATGSADR 206 (1074)
Q Consensus 131 tg~~v~~l~~h~~~VtsLafSPdG~~LaSgs~DGsI~VWDl~tgk~v~~---~~-~h~g~ItsLafSPdg~lLaTGS~DG 206 (1074)
.+.++..+.+|.+.|++|+|+|-. +.+.||++++||.+-...+.. .+ ....-+.++.|...+.-+++|+.|+
T Consensus 263 ~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ 338 (1113)
T KOG0644|consen 263 DGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDG 338 (1113)
T ss_pred CCchHHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCCc
Confidence 999999999999999999999953 677899999999872111111 01 1224467777888888999999999
Q ss_pred eEEEEECCCCcEEEeeCCCCCCeEEEEEecCC-CEEEEE-ECCcEEEEEecCCeeeeccccCCceeeEEEe-c-CCCEEE
Q 001462 207 TVKFWDLETFELIGSTRPEVTGVHAITFHPDG-RTLFSG-FDDNLKVYSWEPVICHDSVDMGWSTLGDLCI-N-DGKLLG 282 (1074)
Q Consensus 207 tI~IWDl~tg~~i~t~~~~~~~ItsIafSPDG-~~LasG-sd~~I~Vwd~~s~~~~~~l~~~~s~~~~l~s-p-DGklLA 282 (1074)
.-..|.+..... +...+.-+.++.+- .+.++. .+-.+.+|++-.+...+....+.....++-. | +.....
T Consensus 339 ea~n~e~~~l~~------~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~m 412 (1113)
T KOG0644|consen 339 EARNHEFEQLAW------RSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAM 412 (1113)
T ss_pred ccccchhhHhhh------hccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhh
Confidence 888887653211 11111111122222 233333 4455788888877666555444444444433 3 556677
Q ss_pred EEECCCeEEEEEcCCCc-eeeeecCCCCCCCCceeEEEEcCCCC
Q 001462 283 CSFYRNSVGIWVADVSH-VEPYGVGAPEPDQSICTEVKFNPPGS 325 (1074)
Q Consensus 283 sgs~DGsV~IWDld~~~-l~~~~~~~~~~~~~~ItsVaFSPDGs 325 (1074)
.+++||...|||+-.+. .+.|. .+ .+.+..-.||+||.
T Consensus 413 sag~dgst~iwdi~eg~pik~y~----~g-h~kl~d~kFSqdgt 451 (1113)
T KOG0644|consen 413 SAGYDGSTIIWDIWEGIPIKHYF----IG-HGKLVDGKFSQDGT 451 (1113)
T ss_pred hccCCCceEeeecccCCcceeee----cc-cceeeccccCCCCc
Confidence 88899999999985443 34443 23 55677779999999
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.1e-10 Score=127.85 Aligned_cols=231 Identities=16% Similarity=0.245 Sum_probs=164.8
Q ss_pred EEEEEEecCCCcEEEEEECCCeEEEEECCCCceEEEeeCCCCC--eEEEEEcCCCCEEEE-EEcC------CeEEEEEcC
Q 001462 18 VNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSP--VDSVAFDSAEVLVLA-GAST------GVIKLWDLE 88 (1074)
Q Consensus 18 Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~k~l~sl~~hs~~--ItsLafSpdg~~Lat-Gs~D------G~I~VWDl~ 88 (1074)
...++|+.|. ..+++|..+| .+||+.+-.+.......+... +..+-| ..++|+. ||.+ ..|.|||=.
T Consensus 8 ~lsvs~NQD~-ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLf--R~N~laLVGGg~~pky~pNkviIWDD~ 83 (346)
T KOG2111|consen 8 TLSVSFNQDH-SCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLF--RSNYLALVGGGSRPKYPPNKVIIWDDL 83 (346)
T ss_pred eeEEEEccCC-ceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhh--hhceEEEecCCCCCCCCCceEEEEecc
Confidence 4458999987 5677777665 899998654332222222222 222222 2334444 3332 479999966
Q ss_pred CCeeEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC-CCeEEEEEeCC--CCCeEEEEEcCCCCEEEE-EECCC
Q 001462 89 ESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIR-KKGCIHTYKGH--TRGINTIRFTPDGRWVVS-GGFDN 164 (1074)
Q Consensus 89 tgk~i~tl~~h~~~VtsLafSPdg~~LaSgS~DGsI~IWDi~-tg~~v~~l~~h--~~~VtsLafSPdG~~LaS-gs~DG 164 (1074)
..+++.++. ...+|.++.+.+ +.|++. ..+.|++|... +-+.++.+... ..++.+++-+.+..+|+. |-.-|
T Consensus 84 k~~~i~el~-f~~~I~~V~l~r--~riVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~G 159 (346)
T KOG2111|consen 84 KERCIIELS-FNSEIKAVKLRR--DRIVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTG 159 (346)
T ss_pred cCcEEEEEE-eccceeeEEEcC--CeEEEE-ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccc
Confidence 677777776 788999999985 446665 46889999987 44555555432 233444443334445555 34568
Q ss_pred eEEEEECCCCce--EEEeeecCCCeEEEEEcCCCcEEEEEeCCCe-EEEEECCCCcEEEeeCCC--CCCeEEEEEecCCC
Q 001462 165 VVKVWDLTAGKL--LHDFKFHEGHIRSIDFHPLEFLLATGSADRT-VKFWDLETFELIGSTRPE--VTGVHAITFHPDGR 239 (1074)
Q Consensus 165 sI~VWDl~tgk~--v~~~~~h~g~ItsLafSPdg~lLaTGS~DGt-I~IWDl~tg~~i~t~~~~--~~~ItsIafSPDG~ 239 (1074)
.|.|.|+...+. ...+.+|.+.|.|++++-+|.++|+++..|+ |+|||..+|+.+.++... ...|.+|+|+|++.
T Consensus 160 qvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s 239 (346)
T KOG2111|consen 160 QVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSS 239 (346)
T ss_pred eEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCcc
Confidence 999999987665 4778899999999999999999999999997 799999999999988654 35699999999999
Q ss_pred EEEEEECC-cEEEEEecC
Q 001462 240 TLFSGFDD-NLKVYSWEP 256 (1074)
Q Consensus 240 ~LasGsd~-~I~Vwd~~s 256 (1074)
+|++++|. ++.||.+..
T Consensus 240 ~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 240 WLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred EEEEEcCCCeEEEEEeec
Confidence 99998765 599999875
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.45 E-value=9.5e-13 Score=150.84 Aligned_cols=164 Identities=18% Similarity=0.329 Sum_probs=129.3
Q ss_pred CCCEEEEEEecCCCcEEEEEECCCeEEEEECCCCceEEEeeCCCCCeEEEEE--cCCCCEEEEEEcCCeEEEEEcCCCee
Q 001462 15 SANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAF--DSAEVLVLAGASTGVIKLWDLEESKM 92 (1074)
Q Consensus 15 s~~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~k~l~sl~~hs~~ItsLaf--Spdg~~LatGs~DG~I~VWDl~tgk~ 92 (1074)
...|+||.|-|.+..+++.+-.+|.+++||.. +....+...| .+++..+......+.. +..+
T Consensus 219 ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~----------~~~~~t~p~~~~~k~~~~f~i~t~ksk~------~rNP 282 (636)
T KOG2394|consen 219 KSSVTCIKWVPGSDSLFLVAHASGNLYLYDKE----------IVCGATAPSYQALKDGDQFAILTSKSKK------TRNP 282 (636)
T ss_pred ccceEEEEEEeCCCceEEEEEecCceEEeecc----------ccccCCCCcccccCCCCeeEEeeeeccc------cCCc
Confidence 37899999999888889999999999999861 1122222222 2455555443322111 1123
Q ss_pred EEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC
Q 001462 93 VRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLT 172 (1074)
Q Consensus 93 i~tl~~h~~~VtsLafSPdg~~LaSgS~DGsI~IWDi~tg~~v~~l~~h~~~VtsLafSPdG~~LaSgs~DGsI~VWDl~ 172 (1074)
+..+.-..+.|..++|+|||++||+.+.||.++|||+.+.+.+..++..-+...|++|+|||+||++|++|--|.||.+.
T Consensus 283 v~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~ 362 (636)
T KOG2394|consen 283 VARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFE 362 (636)
T ss_pred cceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEec
Confidence 33333345589999999999999999999999999999988887777777889999999999999999999999999999
Q ss_pred CCceEEEeeecCCCeEEEEEcC
Q 001462 173 AGKLLHDFKFHEGHIRSIDFHP 194 (1074)
Q Consensus 173 tgk~v~~~~~h~g~ItsLafSP 194 (1074)
..+.+..-++|..+|..++|.|
T Consensus 363 erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 363 ERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred cceEEEeccccccceeeEeecc
Confidence 9999999999999999999985
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.3e-12 Score=148.56 Aligned_cols=288 Identities=17% Similarity=0.237 Sum_probs=214.7
Q ss_pred eEEEEecCCCCEEEEEEecCCCcEEEEEECCCeEEEEECCCCceEEEe-eCCCCCeEEEEEcC--CCCEEEEEEcCCeEE
Q 001462 7 KLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSL-CGLSSPVDSVAFDS--AEVLVLAGASTGVIK 83 (1074)
Q Consensus 7 ~v~~L~gHs~~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~k~l~sl-~~hs~~ItsLafSp--dg~~LatGs~DG~I~ 83 (1074)
....|..|.+.|+.|.|...| .+|++|+.|..|.+||+..+.....+ .+|...|....|-| +..-+++++.||.++
T Consensus 134 l~~kL~~H~GcVntV~FN~~G-d~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr 212 (559)
T KOG1334|consen 134 LQKKLNKHKGCVNTVHFNQRG-DVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVR 212 (559)
T ss_pred hhhcccCCCCccceeeecccC-ceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCcee
Confidence 345688999999999999999 89999999999999999887766655 58888899888988 446799999999999
Q ss_pred EEEcCCCe-e--EEEEeCCCCCeEEEEEcCCCC-EEEEEECCCeEEEEECCCCeEEEEE---eCCCC---CeEEEEEcCC
Q 001462 84 LWDLEESK-M--VRTLTGHKSNCTAVEFHPFGE-FFASGCMDTNLKIWDIRKKGCIHTY---KGHTR---GINTIRFTPD 153 (1074)
Q Consensus 84 VWDl~tgk-~--i~tl~~h~~~VtsLafSPdg~-~LaSgS~DGsI~IWDi~tg~~v~~l---~~h~~---~VtsLafSPd 153 (1074)
+=.+.... . ...+..|.+.|.-++.-|+.. .|.+++.|+.+.-+|++.+.....+ ..+.. ....++..|.
T Consensus 213 ~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~ 292 (559)
T KOG1334|consen 213 VSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPR 292 (559)
T ss_pred eeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCC
Confidence 88765322 2 345667999999999999754 6889999999999999887643333 22333 5678899985
Q ss_pred CC-EEEEEECCCeEEEEECCCCce------EEEee------ecCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCC--C--
Q 001462 154 GR-WVVSGGFDNVVKVWDLTAGKL------LHDFK------FHEGHIRSIDFHPLEFLLATGSADRTVKFWDLET--F-- 216 (1074)
Q Consensus 154 G~-~LaSgs~DGsI~VWDl~tgk~------v~~~~------~h~g~ItsLafSPdg~lLaTGS~DGtI~IWDl~t--g-- 216 (1074)
.. ++++|+.|-.+++||.+.-.. +..|. ...-.|++++|+.++.-|.+...|-.|++|.-.- |
T Consensus 293 nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~ 372 (559)
T KOG1334|consen 293 NTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSE 372 (559)
T ss_pred CccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCC
Confidence 54 789999999999999865322 22222 1234599999998877777777888999995432 2
Q ss_pred --------cEEEe-eCCCCC--CeEEEE-EecCCCEEEEEECCc-EEEEEecCCeeeeccccCCceeeEEEe-cCCCEEE
Q 001462 217 --------ELIGS-TRPEVT--GVHAIT-FHPDGRTLFSGFDDN-LKVYSWEPVICHDSVDMGWSTLGDLCI-NDGKLLG 282 (1074)
Q Consensus 217 --------~~i~t-~~~~~~--~ItsIa-fSPDG~~LasGsd~~-I~Vwd~~s~~~~~~l~~~~s~~~~l~s-pDGklLA 282 (1074)
..+.. +++|.. .|.++- |-|...|+++|+|.+ |.||+-.....+..+.....++.++-. |---+||
T Consensus 373 p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLA 452 (559)
T KOG1334|consen 373 PDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLA 452 (559)
T ss_pred CCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCchhh
Confidence 12222 455543 366665 457889999999866 777777777776666665555554443 4567899
Q ss_pred EEECCCeEEEEEc
Q 001462 283 CSFYRNSVGIWVA 295 (1074)
Q Consensus 283 sgs~DGsV~IWDl 295 (1074)
+++-|.-|+||--
T Consensus 453 sSGid~DVKIWTP 465 (559)
T KOG1334|consen 453 SSGIDHDVKIWTP 465 (559)
T ss_pred ccCCccceeeecC
Confidence 9999999999964
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.5e-11 Score=151.23 Aligned_cols=260 Identities=18% Similarity=0.241 Sum_probs=184.8
Q ss_pred EECCCCceEEEeeCCCCCeEEEEEcCCC-CEEEEEEcCCeEEEEEcCCC-------eeEEEEeCCCCCeEEEEEcCCCCE
Q 001462 43 WAIGKPTALMSLCGLSSPVDSVAFDSAE-VLVLAGASTGVIKLWDLEES-------KMVRTLTGHKSNCTAVEFHPFGEF 114 (1074)
Q Consensus 43 WDl~t~k~l~sl~~hs~~ItsLafSpdg-~~LatGs~DG~I~VWDl~tg-------k~i~tl~~h~~~VtsLafSPdg~~ 114 (1074)
|+. .|..+..+..|...+..++.++.. .++++|+.||+|++|+...- +...++......+.++.+.+.++.
T Consensus 1034 W~p-~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~ 1112 (1431)
T KOG1240|consen 1034 WNP-RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQ 1112 (1431)
T ss_pred CCc-cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCe
Confidence 443 577788888999999998888755 99999999999999998641 122333335678999999999999
Q ss_pred EEEEECCCeEEEEECCCC--e-----EEEEEeCC--CCCeEEEEEcC-CCC-EEEEEECCCeEEEEECCCCceEEEee--
Q 001462 115 FASGCMDTNLKIWDIRKK--G-----CIHTYKGH--TRGINTIRFTP-DGR-WVVSGGFDNVVKVWDLTAGKLLHDFK-- 181 (1074)
Q Consensus 115 LaSgS~DGsI~IWDi~tg--~-----~v~~l~~h--~~~VtsLafSP-dG~-~LaSgs~DGsI~VWDl~tgk~v~~~~-- 181 (1074)
||+++.||.|.+.++... . +......+ ..-|..-+|.. .+. .++.+...+.|..||+++....+.++
T Consensus 1113 ~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~ 1192 (1431)
T KOG1240|consen 1113 FAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQ 1192 (1431)
T ss_pred EEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcC
Confidence 999999999999998752 1 11111112 22233334433 223 67888888999999999877655544
Q ss_pred ecCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCCcEEEeeC-CCCCCeEEEEEecC---CCEEEEE-E--CCcEEEEEe
Q 001462 182 FHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTR-PEVTGVHAITFHPD---GRTLFSG-F--DDNLKVYSW 254 (1074)
Q Consensus 182 ~h~g~ItsLafSPdg~lLaTGS~DGtI~IWDl~tg~~i~t~~-~~~~~ItsIafSPD---G~~LasG-s--d~~I~Vwd~ 254 (1074)
...|.|++++.+|.+.++++|+..|.+.+||++-+.++.... ++..+|..+..+|- ..+.+++ . .+.+.+|++
T Consensus 1193 ~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~ 1272 (1431)
T KOG1240|consen 1193 LRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNM 1272 (1431)
T ss_pred ccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeec
Confidence 346889999999999999999999999999999777766543 45577888877763 3455554 3 345999999
Q ss_pred cCCeeeeccccC------------------CceeeEEE-e-cCCCEEEEEECCCeEEEEEcCCCceeee
Q 001462 255 EPVICHDSVDMG------------------WSTLGDLC-I-NDGKLLGCSFYRNSVGIWVADVSHVEPY 303 (1074)
Q Consensus 255 ~s~~~~~~l~~~------------------~s~~~~l~-s-pDGklLAsgs~DGsV~IWDld~~~l~~~ 303 (1074)
.++.++..+-.. .......+ . ..+.++.+|+.|+.|+.||........+
T Consensus 1273 ~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ss~ 1341 (1431)
T KOG1240|consen 1273 ETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEISSY 1341 (1431)
T ss_pred ccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccccc
Confidence 988766554222 00111111 1 3456888999999999999875554433
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.9e-11 Score=146.81 Aligned_cols=280 Identities=13% Similarity=0.228 Sum_probs=191.5
Q ss_pred CCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeeEEEEeCC---CCCeEEEEEcC--CCCEEEEEECCCeEEEEECC-C-
Q 001462 59 SPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGH---KSNCTAVEFHP--FGEFFASGCMDTNLKIWDIR-K- 131 (1074)
Q Consensus 59 ~~ItsLafSpdg~~LatGs~DG~I~VWDl~tgk~i~tl~~h---~~~VtsLafSP--dg~~LaSgS~DGsI~IWDi~-t- 131 (1074)
.+...+.|+|-...++++...-.|.|||++.++....|..+ ...|+.+++.. |...+++|+.||.|+||+-- .
T Consensus 1065 ~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~ 1144 (1387)
T KOG1517|consen 1065 QPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADK 1144 (1387)
T ss_pred CCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccc
Confidence 34667889998888999887788999999999988777644 34688888865 34589999999999999632 2
Q ss_pred ---CeEEEEEeC-------CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeeec-CCCeEEEEEcC-CCcEE
Q 001462 132 ---KGCIHTYKG-------HTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFH-EGHIRSIDFHP-LEFLL 199 (1074)
Q Consensus 132 ---g~~v~~l~~-------h~~~VtsLafSPdG~~LaSgs~DGsI~VWDl~tgk~v~~~~~h-~g~ItsLafSP-dg~lL 199 (1074)
.+.+..+.+ ..+.-.-+.|.....+|+++|.-..|+|||......+..+... ...++++.-+- .|+.+
T Consensus 1145 ~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i 1224 (1387)
T KOG1517|consen 1145 WKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNII 1224 (1387)
T ss_pred cCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceE
Confidence 223333321 1111134577776667777777889999999888877776533 34466665433 47999
Q ss_pred EEEeCCCeEEEEECCCCc---EEEeeCCCCCC--eEEEEEecCCCE-EEEE-ECCcEEEEEecCCeee--eccccCC--c
Q 001462 200 ATGSADRTVKFWDLETFE---LIGSTRPEVTG--VHAITFHPDGRT-LFSG-FDDNLKVYSWEPVICH--DSVDMGW--S 268 (1074)
Q Consensus 200 aTGS~DGtI~IWDl~tg~---~i~t~~~~~~~--ItsIafSPDG~~-LasG-sd~~I~Vwd~~s~~~~--~~l~~~~--s 268 (1074)
+.|..||.|++||.+... .+.....|... |..+.+.+.|-- |++| .+|.|++||++..... ..+..+| .
T Consensus 1225 ~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yG 1304 (1387)
T KOG1517|consen 1225 AAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYG 1304 (1387)
T ss_pred EEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccC
Confidence 999999999999988543 35556666655 999999886643 6665 6778999999874211 1222323 2
Q ss_pred --eeeEEEecCCCEEEEEECCCeEEEEEcCCCceeeeec--CCCCCCCCceeEEEEcCCCCcceeEEEEEeccCcceEEe
Q 001462 269 --TLGDLCINDGKLLGCSFYRNSVGIWVADVSHVEPYGV--GAPEPDQSICTEVKFNPPGSHSLEKVGIIGRSTSGFRST 344 (1074)
Q Consensus 269 --~~~~l~spDGklLAsgs~DGsV~IWDld~~~l~~~~~--~~~~~~~~~ItsVaFSPDGs~~Lv~vlavG~stG~~r~i 344 (1074)
........+..++|||+. +.|.||++.+..+..+.. +......+.+.|++|+|--- .++.|....+..+|
T Consensus 1305 s~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~-----llAaG~~Ds~V~iY 1378 (1387)
T KOG1517|consen 1305 SALTALTVHEHAPIIASGSA-QLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRL-----LLAAGSADSTVSIY 1378 (1387)
T ss_pred ccceeeeeccCCCeeeecCc-ceEEEEecChhhhcccccCcccccCcCCCcceeeecchhH-----hhhhccCCceEEEe
Confidence 333444467889999977 999999997665543321 11123457789999999655 55555544433333
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.6e-09 Score=122.66 Aligned_cols=288 Identities=17% Similarity=0.223 Sum_probs=188.9
Q ss_pred EEEEEcC----CeEEEEEc--CCCeeE--EEEeCCCCCeEEEEEcCCCCEEEEEEC----CCeEEEEECCCC--e--EEE
Q 001462 73 VLAGAST----GVIKLWDL--EESKMV--RTLTGHKSNCTAVEFHPFGEFFASGCM----DTNLKIWDIRKK--G--CIH 136 (1074)
Q Consensus 73 LatGs~D----G~I~VWDl--~tgk~i--~tl~~h~~~VtsLafSPdg~~LaSgS~----DGsI~IWDi~tg--~--~v~ 136 (1074)
+++|+.. +.|.+|++ .++++. ..+. .......++++|++++|+++.. +|.|..|++... . .+.
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~-~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~ 80 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVA-EGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLN 80 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEE-ESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeec-CCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEee
Confidence 5666666 68999888 455442 2222 3455677999999999999876 478999988764 3 233
Q ss_pred EEeCCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEECCC-CceEEE---ee--e--------cCCCeEEEEEcCCCcEEEE
Q 001462 137 TYKGHTRGINTIRFTPDGRWVVSGG-FDNVVKVWDLTA-GKLLHD---FK--F--------HEGHIRSIDFHPLEFLLAT 201 (1074)
Q Consensus 137 ~l~~h~~~VtsLafSPdG~~LaSgs-~DGsI~VWDl~t-gk~v~~---~~--~--------h~g~ItsLafSPdg~lLaT 201 (1074)
...........++++|++++|+++. .+|.|.+|++.. |.+... +. + .....+++.|+|++++|++
T Consensus 81 ~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v 160 (345)
T PF10282_consen 81 SVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYV 160 (345)
T ss_dssp EEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEE
T ss_pred eeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEE
Confidence 3333445567899999999998887 489999999987 443322 21 0 1244789999999998888
Q ss_pred EeC-CCeEEEEECCCCc--E--EEee-CCCCCCeEEEEEecCCCEEEEEE--CCcEEEEEec--CCee--ee---ccccC
Q 001462 202 GSA-DRTVKFWDLETFE--L--IGST-RPEVTGVHAITFHPDGRTLFSGF--DDNLKVYSWE--PVIC--HD---SVDMG 266 (1074)
Q Consensus 202 GS~-DGtI~IWDl~tg~--~--i~t~-~~~~~~ItsIafSPDG~~LasGs--d~~I~Vwd~~--s~~~--~~---~l~~~ 266 (1074)
... ...|.+|++.... . ...+ .....+.+.++|+|+|+++++.. ++.|.+|++. .+.. .. .+...
T Consensus 161 ~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~ 240 (345)
T PF10282_consen 161 PDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEG 240 (345)
T ss_dssp EETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETT
T ss_pred EecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeecccc
Confidence 753 4579999997654 3 1222 24456689999999999998865 4569999988 3222 11 12111
Q ss_pred ----CceeeEEEecCCCEEEEEE-CCCeEEEEEcCC--CceeeeecCCCCCCCCceeEEEEcCCCCcceeEEEEEeccCc
Q 001462 267 ----WSTLGDLCINDGKLLGCSF-YRNSVGIWVADV--SHVEPYGVGAPEPDQSICTEVKFNPPGSHSLEKVGIIGRSTS 339 (1074)
Q Consensus 267 ----~s~~~~l~spDGklLAsgs-~DGsV~IWDld~--~~l~~~~~~~~~~~~~~ItsVaFSPDGs~~Lv~vlavG~stG 339 (1074)
........++||++|.++. ..+.|.+|+++. +.+...... .........++|+|||+. +.......+
T Consensus 241 ~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~--~~~G~~Pr~~~~s~~g~~----l~Va~~~s~ 314 (345)
T PF10282_consen 241 FTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTV--PTGGKFPRHFAFSPDGRY----LYVANQDSN 314 (345)
T ss_dssp SCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEE--EESSSSEEEEEE-TTSSE----EEEEETTTT
T ss_pred ccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEE--eCCCCCccEEEEeCCCCE----EEEEecCCC
Confidence 2455667789999988877 457899999943 455544321 122445889999999994 444455666
Q ss_pred ceEEeecCCcccceEEEeecCCCCccce
Q 001462 340 GFRSTSPDYETKDIKTIYVDSTGGKPVA 367 (1074)
Q Consensus 340 ~~r~ivpD~et~eI~~i~iDs~gGepv~ 367 (1074)
.+..+-.|.+++.+......-..++|+.
T Consensus 315 ~v~vf~~d~~tG~l~~~~~~~~~~~p~c 342 (345)
T PF10282_consen 315 TVSVFDIDPDTGKLTPVGSSVPIPSPVC 342 (345)
T ss_dssp EEEEEEEETTTTEEEEEEEEEESSSEEE
T ss_pred eEEEEEEeCCCCcEEEecccccCCCCEE
Confidence 6777777778888877763322555543
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.6e-10 Score=134.57 Aligned_cols=214 Identities=14% Similarity=0.106 Sum_probs=145.2
Q ss_pred CeEEEEEcCCCeeEEEEeCCCCCeEEEEEcCCCCEEEEEECC---CeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCE
Q 001462 80 GVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMD---TNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRW 156 (1074)
Q Consensus 80 G~I~VWDl~tgk~i~tl~~h~~~VtsLafSPdg~~LaSgS~D---GsI~IWDi~tg~~v~~l~~h~~~VtsLafSPdG~~ 156 (1074)
..|.++|...+. .+.+..+...+....|+|+|++|+.+..+ ..|++||+.++..... ..+...+.+++|+|||+.
T Consensus 170 ~~l~~~d~~g~~-~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~-~~~~~~~~~~~~spDg~~ 247 (417)
T TIGR02800 170 YELQVADYDGAN-PQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKV-ASFPGMNGAPAFSPDGSK 247 (417)
T ss_pred ceEEEEcCCCCC-CEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEe-ecCCCCccceEECCCCCE
Confidence 368888875443 45555567778999999999999887654 4799999988765433 334555678999999997
Q ss_pred EEEE-ECCC--eEEEEECCCCceEEEeeecCCCeEEEEEcCCCcEEEEEeCC-C--eEEEEECCCCcEEEeeCCCCCCeE
Q 001462 157 VVSG-GFDN--VVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSAD-R--TVKFWDLETFELIGSTRPEVTGVH 230 (1074)
Q Consensus 157 LaSg-s~DG--sI~VWDl~tgk~v~~~~~h~g~ItsLafSPdg~lLaTGS~D-G--tI~IWDl~tg~~i~t~~~~~~~It 230 (1074)
|+.. +.++ .|++||+.++... .+..+.+......|+|+|..|+..+.. + .|++||+.+++.. .+..+...+.
T Consensus 248 l~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~~~~~~~~ 325 (417)
T TIGR02800 248 LAVSLSKDGNPDIYVMDLDGKQLT-RLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-RLTFRGGYNA 325 (417)
T ss_pred EEEEECCCCCccEEEEECCCCCEE-ECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EeecCCCCcc
Confidence 7654 3333 6999999877643 333344555677899999988776543 3 6888898876643 3333445567
Q ss_pred EEEEecCCCEEEEEECC----cEEEEEecCCeeeeccccCCceeeEEEecCCCEEEEEECCC---eEEEEEcCCC
Q 001462 231 AITFHPDGRTLFSGFDD----NLKVYSWEPVICHDSVDMGWSTLGDLCINDGKLLGCSFYRN---SVGIWVADVS 298 (1074)
Q Consensus 231 sIafSPDG~~LasGsd~----~I~Vwd~~s~~~~~~l~~~~s~~~~l~spDGklLAsgs~DG---sV~IWDld~~ 298 (1074)
.+.|+|+|++|+.+..+ .|.+|++....... +..........+++||++|+.++.++ .+.+.+.+..
T Consensus 326 ~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~-l~~~~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~g~ 399 (417)
T TIGR02800 326 SPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERV-LTDTGLDESPSFAPNGRMILYATTRGGRGVLGLVSTDGR 399 (417)
T ss_pred CeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEE-ccCCCCCCCceECCCCCEEEEEEeCCCcEEEEEEECCCc
Confidence 88999999999886543 47777776643322 22222334457789999888877654 3455555443
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.1e-10 Score=133.60 Aligned_cols=202 Identities=16% Similarity=0.142 Sum_probs=144.3
Q ss_pred CeEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEEEEcC---CeEEEEEcCCCeeEEEEeCCCCCeEEEEEcCCCCE
Q 001462 38 QKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGAST---GVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEF 114 (1074)
Q Consensus 38 GtV~IWDl~t~k~l~sl~~hs~~ItsLafSpdg~~LatGs~D---G~I~VWDl~tgk~i~tl~~h~~~VtsLafSPdg~~ 114 (1074)
..|.++|... .....+..+...+....|+|+|++|+.+..+ ..|++||+.+++.... ..+...+.+++|+|+|+.
T Consensus 170 ~~l~~~d~~g-~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~-~~~~~~~~~~~~spDg~~ 247 (417)
T TIGR02800 170 YELQVADYDG-ANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKV-ASFPGMNGAPAFSPDGSK 247 (417)
T ss_pred ceEEEEcCCC-CCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEe-ecCCCCccceEECCCCCE
Confidence 3577888753 3345555667778999999999999987654 4799999988865433 335566778999999997
Q ss_pred EEEE-ECC--CeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECC-C--eEEEEECCCCceEEEeeecCCCeE
Q 001462 115 FASG-CMD--TNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFD-N--VVKVWDLTAGKLLHDFKFHEGHIR 188 (1074)
Q Consensus 115 LaSg-S~D--GsI~IWDi~tg~~v~~l~~h~~~VtsLafSPdG~~LaSgs~D-G--sI~VWDl~tgk~v~~~~~h~g~It 188 (1074)
|+.. +.+ ..|++||+.++... .+..+........|+|||++|+..+.. + .|++||+.+++.. .+..+...+.
T Consensus 248 l~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~~~~~~~~ 325 (417)
T TIGR02800 248 LAVSLSKDGNPDIYVMDLDGKQLT-RLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-RLTFRGGYNA 325 (417)
T ss_pred EEEEECCCCCccEEEEECCCCCEE-ECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EeecCCCCcc
Confidence 7654 333 35999998877543 333344445577999999988776543 3 6888898877643 3443456677
Q ss_pred EEEEcCCCcEEEEEeCCC---eEEEEECCCCcEEEeeCCCCCCeEEEEEecCCCEEEEEE
Q 001462 189 SIDFHPLEFLLATGSADR---TVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGF 245 (1074)
Q Consensus 189 sLafSPdg~lLaTGS~DG---tI~IWDl~tg~~i~t~~~~~~~ItsIafSPDG~~LasGs 245 (1074)
.+.|+|+|.+|+.++.++ .|.+||+.++...... .. .......|+|||++|+...
T Consensus 326 ~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~l~-~~-~~~~~p~~spdg~~l~~~~ 383 (417)
T TIGR02800 326 SPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERVLT-DT-GLDESPSFAPNGRMILYAT 383 (417)
T ss_pred CeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEEcc-CC-CCCCCceECCCCCEEEEEE
Confidence 889999999999888776 7999999876543222 21 2345668999999888754
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=3e-10 Score=133.75 Aligned_cols=233 Identities=12% Similarity=0.021 Sum_probs=154.6
Q ss_pred eEEEEEcCCCeeEEEEeCCCCCeEEEEEcCCCCEEEEEECC---CeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEE
Q 001462 81 VIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMD---TNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWV 157 (1074)
Q Consensus 81 ~I~VWDl~tgk~i~tl~~h~~~VtsLafSPdg~~LaSgS~D---GsI~IWDi~tg~~v~~l~~h~~~VtsLafSPdG~~L 157 (1074)
.|.++|.+.+.. +.+..+...+....|+|||++|+..+.+ ..|++||+.++.... +....+.+....|+|||++|
T Consensus 180 ~l~~~d~~g~~~-~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~l 257 (430)
T PRK00178 180 TLQRSDYDGARA-VTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKL 257 (430)
T ss_pred EEEEECCCCCCc-eEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEE
Confidence 488888875544 4455577789999999999998876543 469999998876543 33233445678999999988
Q ss_pred EE-EECCC--eEEEEECCCCceEEEeeecCCCeEEEEEcCCCcEEEEEeC-C--CeEEEEECCCCcEEEeeCCCCCCeEE
Q 001462 158 VS-GGFDN--VVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSA-D--RTVKFWDLETFELIGSTRPEVTGVHA 231 (1074)
Q Consensus 158 aS-gs~DG--sI~VWDl~tgk~v~~~~~h~g~ItsLafSPdg~lLaTGS~-D--GtI~IWDl~tg~~i~t~~~~~~~Its 231 (1074)
+. ...+| .|++||+.+++... +..+.+......|+|||+.|+..+. + ..|++||+.+++..... ........
T Consensus 258 a~~~~~~g~~~Iy~~d~~~~~~~~-lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt-~~~~~~~~ 335 (430)
T PRK00178 258 AFVLSKDGNPEIYVMDLASRQLSR-VTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVT-FVGNYNAR 335 (430)
T ss_pred EEEEccCCCceEEEEECCCCCeEE-cccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEee-cCCCCccc
Confidence 75 34444 68999998876543 4445555667899999998776654 3 35888888877643322 12223346
Q ss_pred EEEecCCCEEEEEEC--C--cEEEEEecCCeeeeccccCCceeeEEEecCCCEEEEEECC-C--eEEEEEcCCCceeeee
Q 001462 232 ITFHPDGRTLFSGFD--D--NLKVYSWEPVICHDSVDMGWSTLGDLCINDGKLLGCSFYR-N--SVGIWVADVSHVEPYG 304 (1074)
Q Consensus 232 IafSPDG~~LasGsd--~--~I~Vwd~~s~~~~~~l~~~~s~~~~l~spDGklLAsgs~D-G--sV~IWDld~~~l~~~~ 304 (1074)
..|+|||++|+.... + .|.+||+..+........ .......+++||++++..+.+ | .|.+++.+......+.
T Consensus 336 ~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~~-~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~~~~~l~ 414 (430)
T PRK00178 336 PRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRILTDT-SLDESPSVAPNGTMLIYATRQQGRGVLMLVSINGRVRLPLP 414 (430)
T ss_pred eEECCCCCEEEEEEccCCceEEEEEECCCCCEEEccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEECCCCceEECc
Confidence 789999999987642 2 377788776654433332 223355788999998877654 3 4666676544333332
Q ss_pred cCCCCCCCCceeEEEEcCC
Q 001462 305 VGAPEPDQSICTEVKFNPP 323 (1074)
Q Consensus 305 ~~~~~~~~~~ItsVaFSPD 323 (1074)
...+.+...+|+|.
T Consensus 415 -----~~~g~~~~p~ws~~ 428 (430)
T PRK00178 415 -----TAQGEVREPSWSPY 428 (430)
T ss_pred -----CCCCCcCCCccCCC
Confidence 22445677788873
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.8e-10 Score=135.64 Aligned_cols=227 Identities=11% Similarity=0.039 Sum_probs=151.8
Q ss_pred cCceEEEEecCCCCEEEEEEecCCCcEEEEEECC--CeEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEEE-EcCC
Q 001462 4 RGYKLQEFVAHSANVNCISIGKKACRFLITGGDD--QKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAG-ASTG 80 (1074)
Q Consensus 4 tG~~v~~L~gHs~~Vt~IafSPdg~~lLaTGs~D--GtV~IWDl~t~k~l~sl~~hs~~ItsLafSpdg~~LatG-s~DG 80 (1074)
.|...+.+..|...+....|+|||..++++...+ ..|.+|++.+++... +......+....|+|+|+.|+.. ..+|
T Consensus 187 ~g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~la~~~~~~g 265 (430)
T PRK00178 187 DGARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKLAFVLSKDG 265 (430)
T ss_pred CCCCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEEEEEEccCC
Confidence 3555666777888899999999994444444333 368899998775433 33334455678999999988754 3444
Q ss_pred --eEEEEEcCCCeeEEEEeCCCCCeEEEEEcCCCCEEEEEEC-C--CeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCC
Q 001462 81 --VIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCM-D--TNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGR 155 (1074)
Q Consensus 81 --~I~VWDl~tgk~i~tl~~h~~~VtsLafSPdg~~LaSgS~-D--GsI~IWDi~tg~~v~~l~~h~~~VtsLafSPdG~ 155 (1074)
.|++||+.+++.. .+..+........|+|||+.|+..+. + ..|++||+.+++...... .........|+|+|+
T Consensus 266 ~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~-~~~~~~~~~~Spdg~ 343 (430)
T PRK00178 266 NPEIYVMDLASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTF-VGNYNARPRLSADGK 343 (430)
T ss_pred CceEEEEECCCCCeE-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeec-CCCCccceEECCCCC
Confidence 6888899887654 45545556677899999998877654 2 368888987776433222 223344678999999
Q ss_pred EEEEEECC-C--eEEEEECCCCceEEEeeecCCCeEEEEEcCCCcEEEEEeCC---CeEEEEECCCCcEEEeeCCCCCCe
Q 001462 156 WVVSGGFD-N--VVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSAD---RTVKFWDLETFELIGSTRPEVTGV 229 (1074)
Q Consensus 156 ~LaSgs~D-G--sI~VWDl~tgk~v~~~~~h~g~ItsLafSPdg~lLaTGS~D---GtI~IWDl~tg~~i~t~~~~~~~I 229 (1074)
+|+....+ + .|.+||+.+++...... ........|+|+|..|+..+.+ ..|.++++.. .....+..+.+.+
T Consensus 344 ~i~~~~~~~~~~~l~~~dl~tg~~~~lt~--~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g-~~~~~l~~~~g~~ 420 (430)
T PRK00178 344 TLVMVHRQDGNFHVAAQDLQRGSVRILTD--TSLDESPSVAPNGTMLIYATRQQGRGVLMLVSING-RVRLPLPTAQGEV 420 (430)
T ss_pred EEEEEEccCCceEEEEEECCCCCEEEccC--CCCCCCceECCCCCEEEEEEecCCceEEEEEECCC-CceEECcCCCCCc
Confidence 99877643 2 58899998876533222 2223356899999988877644 3577778753 3333444444556
Q ss_pred EEEEEec
Q 001462 230 HAITFHP 236 (1074)
Q Consensus 230 tsIafSP 236 (1074)
...+|+|
T Consensus 421 ~~p~ws~ 427 (430)
T PRK00178 421 REPSWSP 427 (430)
T ss_pred CCCccCC
Confidence 7777776
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.36 E-value=4.6e-12 Score=145.21 Aligned_cols=209 Identities=20% Similarity=0.391 Sum_probs=158.6
Q ss_pred EEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeeEEEE-eCCCCCeEEEEEcC--CCCEEEEEECCCeEEEE
Q 001462 51 LMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTL-TGHKSNCTAVEFHP--FGEFFASGCMDTNLKIW 127 (1074)
Q Consensus 51 l~sl~~hs~~ItsLafSpdg~~LatGs~DG~I~VWDl~tgk~i~tl-~~h~~~VtsLafSP--dg~~LaSgS~DGsI~IW 127 (1074)
-..+.+|.+-|.|++|+.+|.+|++|+.|-.+.|||.-..+++..+ .+|...|.++.|-| ++..+++|..|..|++|
T Consensus 43 E~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lf 122 (758)
T KOG1310|consen 43 EAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLF 122 (758)
T ss_pred hhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEE
Confidence 3467899999999999999999999999999999999887777665 58999999999998 45688999999999999
Q ss_pred ECCCC----------eEEEEEeCCCCCeEEEEEcCCC-CEEEEEECCCeEEEEECCCCceE----------EEeeecCCC
Q 001462 128 DIRKK----------GCIHTYKGHTRGINTIRFTPDG-RWVVSGGFDNVVKVWDLTAGKLL----------HDFKFHEGH 186 (1074)
Q Consensus 128 Di~tg----------~~v~~l~~h~~~VtsLafSPdG-~~LaSgs~DGsI~VWDl~tgk~v----------~~~~~h~g~ 186 (1074)
|+... .....+..|...|..|+-.|++ ..|.++++||.|+-||++....- ..+...--.
T Consensus 123 dl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lie 202 (758)
T KOG1310|consen 123 DLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIE 202 (758)
T ss_pred ecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhhe
Confidence 99742 2345566788889999999988 78999999999999999863211 111112234
Q ss_pred eEEEEEcCC-CcEEEEEeCCCeEEEEECCC--------Cc----------EEEeeCC-CC-----------CCeEEEEEe
Q 001462 187 IRSIDFHPL-EFLLATGSADRTVKFWDLET--------FE----------LIGSTRP-EV-----------TGVHAITFH 235 (1074)
Q Consensus 187 ItsLafSPd-g~lLaTGS~DGtI~IWDl~t--------g~----------~i~t~~~-~~-----------~~ItsIafS 235 (1074)
..++.++|. ..+|++|+.|-..++||.+. +. ++..+.+ |. ..++-+.|+
T Consensus 203 lk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfn 282 (758)
T KOG1310|consen 203 LKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFN 282 (758)
T ss_pred eeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEEC
Confidence 678899995 57899999999999999431 11 1222211 10 125667899
Q ss_pred cCCCEEEEEEC-CcEEEEEecCCee
Q 001462 236 PDGRTLFSGFD-DNLKVYSWEPVIC 259 (1074)
Q Consensus 236 PDG~~LasGsd-~~I~Vwd~~s~~~ 259 (1074)
|+|.-|++... ..+++|++...+.
T Consensus 283 pNGtElLvs~~gEhVYlfdvn~~~~ 307 (758)
T KOG1310|consen 283 PNGTELLVSWGGEHVYLFDVNEDKS 307 (758)
T ss_pred CCCcEEEEeeCCeEEEEEeecCCCC
Confidence 99988887644 4588888875543
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.35 E-value=6.3e-11 Score=132.34 Aligned_cols=247 Identities=18% Similarity=0.247 Sum_probs=187.6
Q ss_pred CCCCEEEEEEecCCCcEEEEEE-CCCeEEEEECCCCceEEEe------eCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEE
Q 001462 14 HSANVNCISIGKKACRFLITGG-DDQKVNLWAIGKPTALMSL------CGLSSPVDSVAFDSAEVLVLAGASTGVIKLWD 86 (1074)
Q Consensus 14 Hs~~Vt~IafSPdg~~lLaTGs-~DGtV~IWDl~t~k~l~sl------~~hs~~ItsLafSpdg~~LatGs~DG~I~VWD 86 (1074)
....|..++|.-++..-++.+. .|..+..+.+........+ .....+|..++.. ...|++|-.+|.+.+|.
T Consensus 54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~--dg~Litc~~sG~l~~~~ 131 (412)
T KOG3881|consen 54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA--DGTLITCVSSGNLQVRH 131 (412)
T ss_pred hhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc--CCEEEEEecCCcEEEEe
Confidence 3456888888877755455444 6777777777665544332 3345566666654 33677778899999999
Q ss_pred cCCCe----eEEEEeCCCCCeEEEEEcCCCCEE-EEEECC--CeEEEEECCCCeEEEEEeCCC---------CCeEEEEE
Q 001462 87 LEESK----MVRTLTGHKSNCTAVEFHPFGEFF-ASGCMD--TNLKIWDIRKKGCIHTYKGHT---------RGINTIRF 150 (1074)
Q Consensus 87 l~tgk----~i~tl~~h~~~VtsLafSPdg~~L-aSgS~D--GsI~IWDi~tg~~v~~l~~h~---------~~VtsLaf 150 (1074)
.+.+. ....+.. ...+..+.-++...+| ++|+.. ..+.|||+...+.+..-+... -.++.+.|
T Consensus 132 ~k~~d~hss~l~~la~-g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~F 210 (412)
T KOG3881|consen 132 DKSGDLHSSKLIKLAT-GPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRF 210 (412)
T ss_pred ccCCccccccceeeec-CCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeecccee
Confidence 88443 2333332 3556777777766554 557777 789999999886665543211 23678889
Q ss_pred cCC--CCEEEEEECCCeEEEEECCCC-ceEEEeeecCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCCcEEEe-eCCCC
Q 001462 151 TPD--GRWVVSGGFDNVVKVWDLTAG-KLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGS-TRPEV 226 (1074)
Q Consensus 151 SPd--G~~LaSgs~DGsI~VWDl~tg-k~v~~~~~h~g~ItsLafSPdg~lLaTGS~DGtI~IWDl~tg~~i~t-~~~~~ 226 (1074)
.+. ...|+++..-+.+++||.+.+ +++..|.....+++++...|.++++++|..-|.+..||++.+..+.. +.+..
T Consensus 211 l~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~t 290 (412)
T KOG3881|consen 211 LEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGIT 290 (412)
T ss_pred cCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCcc
Confidence 887 789999999999999999876 57888888889999999999999999999999999999999998877 78888
Q ss_pred CCeEEEEEecCCCEEEE-EECCcEEEEEecCCeeeecc
Q 001462 227 TGVHAITFHPDGRTLFS-GFDDNLKVYSWEPVICHDSV 263 (1074)
Q Consensus 227 ~~ItsIafSPDG~~Las-Gsd~~I~Vwd~~s~~~~~~l 263 (1074)
+.|++|..+|.+.+|++ |-|..++|||.++.......
T Consensus 291 Gsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kv 328 (412)
T KOG3881|consen 291 GSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKV 328 (412)
T ss_pred CCcceEEEcCCCceEEeeccceeEEEeecccchhhhhh
Confidence 99999999999999998 56888999999986554443
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.8e-10 Score=130.48 Aligned_cols=298 Identities=12% Similarity=0.139 Sum_probs=208.5
Q ss_pred CCCCEEEEEEecCCCcEEEEEECCCeEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEEEEcCC-------------
Q 001462 14 HSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTG------------- 80 (1074)
Q Consensus 14 Hs~~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~k~l~sl~~hs~~ItsLafSpdg~~LatGs~DG------------- 80 (1074)
..-++..+.|||.| .+|++.... .|.+|+-..+..+..+. ...|..+.|+|+++||.+-...+
T Consensus 31 ~~~p~~~~~~SP~G-~~l~~~~~~-~V~~~~g~~~~~l~~~~--~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~ 106 (561)
T COG5354 31 ENWPVAYVSESPLG-TYLFSEHAA-GVECWGGPSKAKLVRFR--HPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTS 106 (561)
T ss_pred cCcchhheeecCcc-hheehhhcc-ceEEccccchhheeeee--cCCceecccCcccceeeeeccCCccChhhccCCccc
Confidence 44578889999999 777776665 48899876665554444 35689999999999999865533
Q ss_pred --eEEEEEcCCCeeEEEEeCCCCC--eE-EEEEcCCCCEEEEEECCCeEEEEECCCCeE-EEEEeC-CCCCeEEEEEcCC
Q 001462 81 --VIKLWDLEESKMVRTLTGHKSN--CT-AVEFHPFGEFFASGCMDTNLKIWDIRKKGC-IHTYKG-HTRGINTIRFTPD 153 (1074)
Q Consensus 81 --~I~VWDl~tgk~i~tl~~h~~~--Vt-sLafSPdg~~LaSgS~DGsI~IWDi~tg~~-v~~l~~-h~~~VtsLafSPd 153 (1074)
.+.+||+.+|..+..+.....+ .+ -+.|+-+++++|-- ....++|+++ ++.. ...+.. ....|....|+|.
T Consensus 107 ~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~ 184 (561)
T COG5354 107 KNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPE 184 (561)
T ss_pred cCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-ccCeEEEEec-CCccccCchhhccccceeeEEecCC
Confidence 4999999999999988766555 44 68899888877665 3456999997 3321 111211 1356889999995
Q ss_pred C--CEEEE-----EECCCeEEEEECCCCceEEEeeecCCCeEEEEEcCCCcEEEEEe-----------CCCeEEEEECCC
Q 001462 154 G--RWVVS-----GGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGS-----------ADRTVKFWDLET 215 (1074)
Q Consensus 154 G--~~LaS-----gs~DGsI~VWDl~tgk~v~~~~~h~g~ItsLafSPdg~lLaTGS-----------~DGtI~IWDl~t 215 (1074)
| ..|+. ++..+.+++|.+..+..+.........-..+.|++.|++|++-- ....++|+++..
T Consensus 185 ~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e 264 (561)
T COG5354 185 GNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITE 264 (561)
T ss_pred CCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecc
Confidence 4 34443 45678999999987777665544444456789999998776542 124588888885
Q ss_pred CcEEEeeCCCCCCeEEEEEecCCCEEEEEE---CCcEEEEEecCCeeeeccccCCceeeEEEecCCCEEEEEECC---Ce
Q 001462 216 FELIGSTRPEVTGVHAITFHPDGRTLFSGF---DDNLKVYSWEPVICHDSVDMGWSTLGDLCINDGKLLGCSFYR---NS 289 (1074)
Q Consensus 216 g~~i~t~~~~~~~ItsIafSPDG~~LasGs---d~~I~Vwd~~s~~~~~~l~~~~s~~~~l~spDGklLAsgs~D---Gs 289 (1074)
..+.... ...++|...+|.|.++.+++.+ .-.+.+|+++....+ +.....-...+++|.+++++.++.| |.
T Consensus 265 ~~i~V~~-~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~Nl~~--~~Pe~~rNT~~fsp~~r~il~agF~nl~gn 341 (561)
T COG5354 265 RSIPVEK-DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGNLRF--YFPEQKRNTIFFSPHERYILFAGFDNLQGN 341 (561)
T ss_pred cccceec-cccccceeeeecccCCceeEEecccccceeecccccceEE--ecCCcccccccccCcccEEEEecCCccccc
Confidence 4444333 5578999999999988777643 445888888876322 2222344567788999999887765 78
Q ss_pred EEEEEcCCCceeeeecCCCCCCCCceeEEEEcCCCC
Q 001462 290 VGIWVADVSHVEPYGVGAPEPDQSICTEVKFNPPGS 325 (1074)
Q Consensus 290 V~IWDld~~~l~~~~~~~~~~~~~~ItsVaFSPDGs 325 (1074)
|.|||........-. .......-+.|+|||.
T Consensus 342 i~i~~~~~rf~~~~~-----~~~~n~s~~~wspd~q 372 (561)
T COG5354 342 IEIFDPAGRFKVAGA-----FNGLNTSYCDWSPDGQ 372 (561)
T ss_pred eEEeccCCceEEEEE-----eecCCceEeeccCCce
Confidence 999998654433322 1233455678999999
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.35 E-value=4.2e-11 Score=133.73 Aligned_cols=219 Identities=23% Similarity=0.316 Sum_probs=168.8
Q ss_pred CCCCEEEEEEecCCCcEEEEEECCCeEEEEECCCCc----eEEEeeCCCCCeEEEEEcCCCC-EEEEEEcC--CeEEEEE
Q 001462 14 HSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPT----ALMSLCGLSSPVDSVAFDSAEV-LVLAGAST--GVIKLWD 86 (1074)
Q Consensus 14 Hs~~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~k----~l~sl~~hs~~ItsLafSpdg~-~LatGs~D--G~I~VWD 86 (1074)
.++.|..++... ..|++|-.+|.+.+|....+. .+..+..+ .++..+.-++... ++++||.. ..+.|||
T Consensus 104 ~~~~I~gl~~~d---g~Litc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwd 179 (412)
T KOG3881|consen 104 GTKSIKGLKLAD---GTLITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWD 179 (412)
T ss_pred ccccccchhhcC---CEEEEEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeee
Confidence 344555555442 268889999999999986432 33334332 5566677776554 55568888 7899999
Q ss_pred cCCCeeEEEEeCCC---------CCeEEEEEcCC--CCEEEEEECCCeEEEEECCCC-eEEEEEeCCCCCeEEEEEcCCC
Q 001462 87 LEESKMVRTLTGHK---------SNCTAVEFHPF--GEFFASGCMDTNLKIWDIRKK-GCIHTYKGHTRGINTIRFTPDG 154 (1074)
Q Consensus 87 l~tgk~i~tl~~h~---------~~VtsLafSPd--g~~LaSgS~DGsI~IWDi~tg-~~v~~l~~h~~~VtsLafSPdG 154 (1074)
++..+.++.-+.-. -.++++.|.+. ...|+++..-+.|++||.+.+ .++..+.....+++++...|.|
T Consensus 180 le~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~g 259 (412)
T KOG3881|consen 180 LEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSG 259 (412)
T ss_pred cccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCC
Confidence 99887666554322 23677889887 788999999999999999865 4677887778899999999999
Q ss_pred CEEEEEECCCeEEEEECCCCceEEE-eeecCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCCcEEEeeCCCCCCeEEEE
Q 001462 155 RWVVSGGFDNVVKVWDLTAGKLLHD-FKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAIT 233 (1074)
Q Consensus 155 ~~LaSgs~DGsI~VWDl~tgk~v~~-~~~h~g~ItsLafSPdg~lLaTGS~DGtI~IWDl~tg~~i~t~~~~~~~ItsIa 233 (1074)
+++++|..-|.|..||++.++.... +++..|.|+++..+|.+.+|++++-|.+|+|+|+.+.+++..... ...+++|.
T Consensus 260 n~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYv-Ks~lt~il 338 (412)
T KOG3881|consen 260 NFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYV-KSRLTFIL 338 (412)
T ss_pred cEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhh-hccccEEE
Confidence 9999999999999999999998776 888899999999999999999999999999999999766654332 23345665
Q ss_pred EecC
Q 001462 234 FHPD 237 (1074)
Q Consensus 234 fSPD 237 (1074)
+.++
T Consensus 339 ~~~~ 342 (412)
T KOG3881|consen 339 LRDD 342 (412)
T ss_pred ecCC
Confidence 5543
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.35 E-value=8.3e-12 Score=133.32 Aligned_cols=199 Identities=22% Similarity=0.369 Sum_probs=151.1
Q ss_pred cCCCCEEEEEEecCCCcEEEEEECCCeEEEEECCCCceE--------------EEe-------------e----------
Q 001462 13 AHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTAL--------------MSL-------------C---------- 55 (1074)
Q Consensus 13 gHs~~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~k~l--------------~sl-------------~---------- 55 (1074)
.|...|+.+..-|++ .|.+-+.|+.+.+|++..+..+ ..+ .
T Consensus 54 ~g~~~it~lq~~p~d--~l~tqgRd~~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~ 131 (323)
T KOG0322|consen 54 FGRLFITNLQSIPND--SLDTQGRDPLLILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQ 131 (323)
T ss_pred hccceeeceeecCCc--chhhcCCCceEEEEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhh
Confidence 466788888888865 5788889999999987542110 000 0
Q ss_pred ----------------CCCCCeEEEEEcC-CC--CEEEEEEcCCeEEEEEcCCCee----------EEEEeCCCCCeEEE
Q 001462 56 ----------------GLSSPVDSVAFDS-AE--VLVLAGASTGVIKLWDLEESKM----------VRTLTGHKSNCTAV 106 (1074)
Q Consensus 56 ----------------~hs~~ItsLafSp-dg--~~LatGs~DG~I~VWDl~tgk~----------i~tl~~h~~~VtsL 106 (1074)
...+.+.|..|.- ++ -+|++|..+|.+.+||+..+.. ......|..+|.++
T Consensus 132 D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsl 211 (323)
T KOG0322|consen 132 DGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSL 211 (323)
T ss_pred ccCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceee
Confidence 0112344544332 22 2566778899999999998743 33445789999999
Q ss_pred EEcCCCCEEEEEECCCeEEEEECCCC--eE--EEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeee
Q 001462 107 EFHPFGEFFASGCMDTNLKIWDIRKK--GC--IHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKF 182 (1074)
Q Consensus 107 afSPdg~~LaSgS~DGsI~IWDi~tg--~~--v~~l~~h~~~VtsLafSPdG~~LaSgs~DGsI~VWDl~tgk~v~~~~~ 182 (1074)
.|.+.-..=++|+.+..+..|.+... .+ -..+.-...+|..+..-||++.+++++.|+.|+||..++..++..++.
T Consensus 212 dyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLky 291 (323)
T KOG0322|consen 212 DYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKY 291 (323)
T ss_pred eechhhcCCcCCCccccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhh
Confidence 99886666677888888999988643 22 122222345688999999999999999999999999999999999999
Q ss_pred cCCCeEEEEEcCCCcEEEEEeCCCeEEEEEC
Q 001462 183 HEGHIRSIDFHPLEFLLATGSADRTVKFWDL 213 (1074)
Q Consensus 183 h~g~ItsLafSPdg~lLaTGS~DGtI~IWDl 213 (1074)
|.+.|.+++|+|+..++|.++.|+.|.+|++
T Consensus 292 Hsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 292 HSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred hhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 9999999999999999999999999999986
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.34 E-value=1e-10 Score=123.93 Aligned_cols=150 Identities=17% Similarity=0.385 Sum_probs=110.8
Q ss_pred EEEEEcCCCCEEEEEEC----------CCeEEEEECCC-CeEEEEEeC-CCCCeEEEEEcCCCCEEEEE--ECCCeEEEE
Q 001462 104 TAVEFHPFGEFFASGCM----------DTNLKIWDIRK-KGCIHTYKG-HTRGINTIRFTPDGRWVVSG--GFDNVVKVW 169 (1074)
Q Consensus 104 tsLafSPdg~~LaSgS~----------DGsI~IWDi~t-g~~v~~l~~-h~~~VtsLafSPdG~~LaSg--s~DGsI~VW 169 (1074)
..+.|+++|++|++-.. -|...+|.++. +..+..+.- ..++|.+++|+|+|..|++. ..++.|.+|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 46789999987766533 13344444422 233334432 34569999999999987554 456799999
Q ss_pred ECCCCceEEEeeecCCCeEEEEEcCCCcEEEEEeC---CCeEEEEECCCCcEEEeeCCCCCCeEEEEEecCCCEEEEEE-
Q 001462 170 DLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSA---DRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGF- 245 (1074)
Q Consensus 170 Dl~tgk~v~~~~~h~g~ItsLafSPdg~lLaTGS~---DGtI~IWDl~tg~~i~t~~~~~~~ItsIafSPDG~~LasGs- 245 (1074)
|++ ++.+..+. ...+..+.|+|+|++|++++. .|.|.+||+.+.+.+..... ..+..++|+|||++|+++.
T Consensus 89 d~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~--~~~t~~~WsPdGr~~~ta~t 163 (194)
T PF08662_consen 89 DVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEH--SDATDVEWSPDGRYLATATT 163 (194)
T ss_pred cCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeecccc--CcEEEEEEcCCCCEEEEEEe
Confidence 996 66666664 567889999999999999874 46799999998888877653 3478999999999999853
Q ss_pred ------CCcEEEEEecCCe
Q 001462 246 ------DDNLKVYSWEPVI 258 (1074)
Q Consensus 246 ------d~~I~Vwd~~s~~ 258 (1074)
|++++||++....
T Consensus 164 ~~r~~~dng~~Iw~~~G~~ 182 (194)
T PF08662_consen 164 SPRLRVDNGFKIWSFQGRL 182 (194)
T ss_pred ccceeccccEEEEEecCeE
Confidence 6779999986543
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.3e-11 Score=140.39 Aligned_cols=271 Identities=17% Similarity=0.239 Sum_probs=198.3
Q ss_pred EEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeeEEEE-eCCCCCeEEEEEcCC--CCEEEEEECCCeEEEE
Q 001462 51 LMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTL-TGHKSNCTAVEFHPF--GEFFASGCMDTNLKIW 127 (1074)
Q Consensus 51 l~sl~~hs~~ItsLafSpdg~~LatGs~DG~I~VWDl~tgk~i~tl-~~h~~~VtsLafSPd--g~~LaSgS~DGsI~IW 127 (1074)
...|..|.+.|..+.|+..|..|++|+.|..|.+|||..+.....+ .+|...|....|-|. ...+++++.||.+++=
T Consensus 135 ~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s 214 (559)
T KOG1334|consen 135 QKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVS 214 (559)
T ss_pred hhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeee
Confidence 3456789999999999999999999999999999999988776655 478888888889884 4578999999999988
Q ss_pred ECCCCeE---EEEEeCCCCCeEEEEEcCCC-CEEEEEECCCeEEEEECCCCceEEEee---ecCC---CeEEEEEcCCC-
Q 001462 128 DIRKKGC---IHTYKGHTRGINTIRFTPDG-RWVVSGGFDNVVKVWDLTAGKLLHDFK---FHEG---HIRSIDFHPLE- 196 (1074)
Q Consensus 128 Di~tg~~---v~~l~~h~~~VtsLafSPdG-~~LaSgs~DGsI~VWDl~tgk~v~~~~---~h~g---~ItsLafSPdg- 196 (1074)
.+..... ...+..|.+.|..++.-|+. .-|.+++.|+.+.-+|++++.....+. .+.. ..+.++.+|..
T Consensus 215 ~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt 294 (559)
T KOG1334|consen 215 EILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNT 294 (559)
T ss_pred eeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCc
Confidence 7653332 34455688999999999865 468899999999999998876543332 2233 46788899865
Q ss_pred cEEEEEeCCCeEEEEECCCCcE------EEeeCC------CCCCeEEEEEecCCC-EEEEEECCcEEEEEecCCee----
Q 001462 197 FLLATGSADRTVKFWDLETFEL------IGSTRP------EVTGVHAITFHPDGR-TLFSGFDDNLKVYSWEPVIC---- 259 (1074)
Q Consensus 197 ~lLaTGS~DGtI~IWDl~tg~~------i~t~~~------~~~~ItsIafSPDG~-~LasGsd~~I~Vwd~~s~~~---- 259 (1074)
.++++|+.|..+++||.+.... +..+.+ ....|++++|+.++. +|++-.+..|++|.-..+..
T Consensus 295 ~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~ 374 (559)
T KOG1334|consen 295 NEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPD 374 (559)
T ss_pred cccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCC
Confidence 5899999999999999875332 233332 234699999997655 44555677788884332221
Q ss_pred --------e-eccccCC---ceeeE-EEecCCCEEEEEECCCeEEEEEcCCCceeeeecCCCCCCCCceeEEEEcCCCC
Q 001462 260 --------H-DSVDMGW---STLGD-LCINDGKLLGCSFYRNSVGIWVADVSHVEPYGVGAPEPDQSICTEVKFNPPGS 325 (1074)
Q Consensus 260 --------~-~~l~~~~---s~~~~-l~spDGklLAsgs~DGsV~IWDld~~~l~~~~~~~~~~~~~~ItsVaFSPDGs 325 (1074)
. ..+..+. .+-++ +|-|...|+++|+.-|.|.||+-.++.+..++ ++...-|+|+.=+|.--
T Consensus 375 ~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~M----egDr~VVNCLEpHP~~P 449 (559)
T KOG1334|consen 375 PSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFM----EGDRHVVNCLEPHPHLP 449 (559)
T ss_pred CCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHh----hcccceEeccCCCCCCc
Confidence 1 1122211 11222 33478899999999999999998877776665 45556888988888554
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.2e-10 Score=123.37 Aligned_cols=155 Identities=24% Similarity=0.464 Sum_probs=115.3
Q ss_pred EEEEEcCCCCEEEEEEc----------CCeEEEEEcC-CCeeEEEEeC-CCCCeEEEEEcCCCCEEEEEE--CCCeEEEE
Q 001462 62 DSVAFDSAEVLVLAGAS----------TGVIKLWDLE-ESKMVRTLTG-HKSNCTAVEFHPFGEFFASGC--MDTNLKIW 127 (1074)
Q Consensus 62 tsLafSpdg~~LatGs~----------DG~I~VWDl~-tgk~i~tl~~-h~~~VtsLafSPdg~~LaSgS--~DGsI~IW 127 (1074)
..+.|+++|.+|++-.. -|...+|.++ .+.....+.- ..++|.+++|+|+|+.|++.. .++.|.+|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 45889999988776433 1345555552 2233444432 345799999999999876653 46789999
Q ss_pred ECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEEC---CCeEEEEECCCCceEEEeeecCCCeEEEEEcCCCcEEEEEeC
Q 001462 128 DIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGF---DNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSA 204 (1074)
Q Consensus 128 Di~tg~~v~~l~~h~~~VtsLafSPdG~~LaSgs~---DGsI~VWDl~tgk~v~~~~~h~g~ItsLafSPdg~lLaTGS~ 204 (1074)
|++ ++.+..+. ...+..+.|+|+|++|++|+. .|.|.+||+++.+.+..+. | ..+..++|+|+|++|+++..
T Consensus 89 d~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~-~~~t~~~WsPdGr~~~ta~t 163 (194)
T PF08662_consen 89 DVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-H-SDATDVEWSPDGRYLATATT 163 (194)
T ss_pred cCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc-c-CcEEEEEEcCCCCEEEEEEe
Confidence 996 66666664 456789999999999999874 4679999999888887776 3 34789999999999999874
Q ss_pred ------CCeEEEEECCCCcEEEee
Q 001462 205 ------DRTVKFWDLETFELIGST 222 (1074)
Q Consensus 205 ------DGtI~IWDl~tg~~i~t~ 222 (1074)
|..++||+.. |+.+...
T Consensus 164 ~~r~~~dng~~Iw~~~-G~~l~~~ 186 (194)
T PF08662_consen 164 SPRLRVDNGFKIWSFQ-GRLLYKK 186 (194)
T ss_pred ccceeccccEEEEEec-CeEeEec
Confidence 6789999985 6655543
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=4.8e-10 Score=132.50 Aligned_cols=231 Identities=15% Similarity=0.094 Sum_probs=149.8
Q ss_pred CceEEEEecCCCCEEEEEEecCCCc--EEEEEECCC--eEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEEEEc-C
Q 001462 5 GYKLQEFVAHSANVNCISIGKKACR--FLITGGDDQ--KVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGAS-T 79 (1074)
Q Consensus 5 G~~v~~L~gHs~~Vt~IafSPdg~~--lLaTGs~DG--tV~IWDl~t~k~l~sl~~hs~~ItsLafSpdg~~LatGs~-D 79 (1074)
|...+.+..+...+.+-+|+|||.. ++++...+| .|++.++..++.. .+...........|+|||+.|+..+. +
T Consensus 174 G~~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~-~lt~~~g~~~~p~wSPDG~~Laf~s~~~ 252 (428)
T PRK01029 174 GQNLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGK-KILALQGNQLMPTFSPRKKLLAFISDRY 252 (428)
T ss_pred CCCceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCce-EeecCCCCccceEECCCCCEEEEEECCC
Confidence 4444555555667778899999955 334555444 5777788766543 33334455567899999998887653 2
Q ss_pred C----eEEEEEcCCC---eeEEEEeCCCCCeEEEEEcCCCCEEEEEE-CCCe--EEEEECCC-CeEEEEEeCCCCCeEEE
Q 001462 80 G----VIKLWDLEES---KMVRTLTGHKSNCTAVEFHPFGEFFASGC-MDTN--LKIWDIRK-KGCIHTYKGHTRGINTI 148 (1074)
Q Consensus 80 G----~I~VWDl~tg---k~i~tl~~h~~~VtsLafSPdg~~LaSgS-~DGs--I~IWDi~t-g~~v~~l~~h~~~VtsL 148 (1074)
| .+.+|++..+ +.......+.......+|+|||+.|+..+ .+|. |+++++.. +.....+..+...+...
T Consensus 253 g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p 332 (428)
T PRK01029 253 GNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCP 332 (428)
T ss_pred CCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccce
Confidence 2 3444776653 33333333334456789999999888765 3564 55555542 33344454444567789
Q ss_pred EEcCCCCEEEEEECC---CeEEEEECCCCceEEEeeecCCCeEEEEEcCCCcEEEEEeC---CCeEEEEECCCCcEEEee
Q 001462 149 RFTPDGRWVVSGGFD---NVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSA---DRTVKFWDLETFELIGST 222 (1074)
Q Consensus 149 afSPdG~~LaSgs~D---GsI~VWDl~tgk~v~~~~~h~g~ItsLafSPdg~lLaTGS~---DGtI~IWDl~tg~~i~t~ 222 (1074)
.|+|||++|+..+.+ ..|.+||+.+++...... ....+....|+|||+.|+.... ...|++||+..++.....
T Consensus 333 ~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~-~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt 411 (428)
T PRK01029 333 AWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTT-SPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIV 411 (428)
T ss_pred eECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccC-CCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEee
Confidence 999999998876543 479999998887654332 3345678999999998876543 356899999877654333
Q ss_pred CCCCCCeEEEEEecCC
Q 001462 223 RPEVTGVHAITFHPDG 238 (1074)
Q Consensus 223 ~~~~~~ItsIafSPDG 238 (1074)
...+.+...+|+|-.
T Consensus 412 -~~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 412 -IGSGEKRFPSWGAFP 426 (428)
T ss_pred -cCCCcccCceecCCC
Confidence 334556777888743
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=4.6e-10 Score=132.65 Aligned_cols=239 Identities=12% Similarity=0.006 Sum_probs=153.7
Q ss_pred CeEEEEEcCCCeeEEEEeCCCCCeEEEEEcCCCCE--E-EEEECC--CeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCC
Q 001462 80 GVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEF--F-ASGCMD--TNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDG 154 (1074)
Q Consensus 80 G~I~VWDl~tgk~i~tl~~h~~~VtsLafSPdg~~--L-aSgS~D--GsI~IWDi~tg~~v~~l~~h~~~VtsLafSPdG 154 (1074)
+.|.+.|.+.+.. +.+......+..-.|+|||+. | ++...+ ..|++.++..+...... ...+.....+|+|||
T Consensus 165 ~~l~~~d~dG~~~-~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt-~~~g~~~~p~wSPDG 242 (428)
T PRK01029 165 GELWSVDYDGQNL-RPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKIL-ALQGNQLMPTFSPRK 242 (428)
T ss_pred ceEEEEcCCCCCc-eEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEee-cCCCCccceEECCCC
Confidence 4688888765544 445545666788899999975 3 233333 45888899877643332 234445678999999
Q ss_pred CEEEEEEC-----CCeEEEEECCCC---ceEEEeeecCCCeEEEEEcCCCcEEEEEe-CCCe--EEEEECCC-CcEEEee
Q 001462 155 RWVVSGGF-----DNVVKVWDLTAG---KLLHDFKFHEGHIRSIDFHPLEFLLATGS-ADRT--VKFWDLET-FELIGST 222 (1074)
Q Consensus 155 ~~LaSgs~-----DGsI~VWDl~tg---k~v~~~~~h~g~ItsLafSPdg~lLaTGS-~DGt--I~IWDl~t-g~~i~t~ 222 (1074)
++|+.... +..+..|++..+ ........+.+.....+|+|||+.|+..+ .+|. |+++++.. +.....+
T Consensus 243 ~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~l 322 (428)
T PRK01029 243 KLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLL 322 (428)
T ss_pred CEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEe
Confidence 98887553 223444777653 33333332233456789999999877765 4564 44555542 2233334
Q ss_pred CCCCCCeEEEEEecCCCEEEEEEC----CcEEEEEecCCeeeeccccCCceeeEEEecCCCEEEEEEC---CCeEEEEEc
Q 001462 223 RPEVTGVHAITFHPDGRTLFSGFD----DNLKVYSWEPVICHDSVDMGWSTLGDLCINDGKLLGCSFY---RNSVGIWVA 295 (1074)
Q Consensus 223 ~~~~~~ItsIafSPDG~~LasGsd----~~I~Vwd~~s~~~~~~l~~~~s~~~~l~spDGklLAsgs~---DGsV~IWDl 295 (1074)
......+....|+|||++|+.... ..|.+|++..+................|++||++|+.... .+.|.+|++
T Consensus 323 t~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl 402 (428)
T PRK01029 323 TKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISL 402 (428)
T ss_pred ccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCCCCccceEECCCCCEEEEEECCCCCceEEEEEC
Confidence 444456678899999999987543 2488999887766554443334456778899998876543 356888888
Q ss_pred CCCceeeeecCCCCCCCCceeEEEEcCCCC
Q 001462 296 DVSHVEPYGVGAPEPDQSICTEVKFNPPGS 325 (1074)
Q Consensus 296 d~~~l~~~~~~~~~~~~~~ItsVaFSPDGs 325 (1074)
+.+....+. ...+.+...+|+|..+
T Consensus 403 ~~g~~~~Lt-----~~~g~~~~p~Ws~~~~ 427 (428)
T PRK01029 403 ITKKTRKIV-----IGSGEKRFPSWGAFPS 427 (428)
T ss_pred CCCCEEEee-----cCCCcccCceecCCCC
Confidence 877665553 2234566789999764
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=5.9e-10 Score=132.49 Aligned_cols=233 Identities=15% Similarity=0.070 Sum_probs=150.3
Q ss_pred eEEEEEcCCCeeEEEEeCCCCCeEEEEEcCCCCEEEEEECC---CeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEE
Q 001462 81 VIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMD---TNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWV 157 (1074)
Q Consensus 81 ~I~VWDl~tgk~i~tl~~h~~~VtsLafSPdg~~LaSgS~D---GsI~IWDi~tg~~v~~l~~h~~~VtsLafSPdG~~L 157 (1074)
.|.++|...... +.+..+...+.+..|+|||++|+..+.+ ..|++||+.+++... +..........+|+|||+.|
T Consensus 199 ~l~i~d~dG~~~-~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~L 276 (448)
T PRK04792 199 QLMIADYDGYNE-QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKL 276 (448)
T ss_pred EEEEEeCCCCCc-eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEE
Confidence 677778755443 4455567788999999999988876543 359999998876433 22223334578999999988
Q ss_pred EE-EECCC--eEEEEECCCCceEEEeeecCCCeEEEEEcCCCcEEEEEeC-CC--eEEEEECCCCcEEEeeCCCCCCeEE
Q 001462 158 VS-GGFDN--VVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSA-DR--TVKFWDLETFELIGSTRPEVTGVHA 231 (1074)
Q Consensus 158 aS-gs~DG--sI~VWDl~tgk~v~~~~~h~g~ItsLafSPdg~lLaTGS~-DG--tI~IWDl~tg~~i~t~~~~~~~Its 231 (1074)
+. .+.+| .|++||+.+++.. .+..+.......+|+|||+.|+..+. ++ .|+++|+.+++..... ........
T Consensus 277 a~~~~~~g~~~Iy~~dl~tg~~~-~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt-~~g~~~~~ 354 (448)
T PRK04792 277 ALVLSKDGQPEIYVVDIATKALT-RITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLT-FEGEQNLG 354 (448)
T ss_pred EEEEeCCCCeEEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEe-cCCCCCcC
Confidence 65 45556 4888899877654 34445555678899999998877654 33 5777788877653322 12222345
Q ss_pred EEEecCCCEEEEEEC--Cc--EEEEEecCCeeeeccccCCceeeEEEecCCCEEEEEECC-C--eEEEEEcCCCceeeee
Q 001462 232 ITFHPDGRTLFSGFD--DN--LKVYSWEPVICHDSVDMGWSTLGDLCINDGKLLGCSFYR-N--SVGIWVADVSHVEPYG 304 (1074)
Q Consensus 232 IafSPDG~~LasGsd--~~--I~Vwd~~s~~~~~~l~~~~s~~~~l~spDGklLAsgs~D-G--sV~IWDld~~~l~~~~ 304 (1074)
.+|+|||++|+.... +. |.++++........... .......++|||++|+....+ | .+.+++.+......+.
T Consensus 355 ~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G~~~~~l~ 433 (448)
T PRK04792 355 GSITPDGRSMIMVNRTNGKFNIARQDLETGAMQVLTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSIDGRFKARLP 433 (448)
T ss_pred eeECCCCCEEEEEEecCCceEEEEEECCCCCeEEccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEECCCCceEECc
Confidence 789999999987532 32 45566665544322222 122344688999988776643 3 3666677644433332
Q ss_pred cCCCCCCCCceeEEEEcCC
Q 001462 305 VGAPEPDQSICTEVKFNPP 323 (1074)
Q Consensus 305 ~~~~~~~~~~ItsVaFSPD 323 (1074)
...+.+...+|+|.
T Consensus 434 -----~~~g~~~~p~Wsp~ 447 (448)
T PRK04792 434 -----AGQGEVKSPAWSPF 447 (448)
T ss_pred -----CCCCCcCCCccCCC
Confidence 23456778899983
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.1e-08 Score=114.46 Aligned_cols=283 Identities=18% Similarity=0.215 Sum_probs=189.4
Q ss_pred CCeEEEEECCCC--c-eEEEeeCCCCCeEEEEEcCCCCEEEEEEcC---CeEEEEEcCC--CeeEE--EEeCCCCCeEEE
Q 001462 37 DQKVNLWAIGKP--T-ALMSLCGLSSPVDSVAFDSAEVLVLAGAST---GVIKLWDLEE--SKMVR--TLTGHKSNCTAV 106 (1074)
Q Consensus 37 DGtV~IWDl~t~--k-~l~sl~~hs~~ItsLafSpdg~~LatGs~D---G~I~VWDl~t--gk~i~--tl~~h~~~VtsL 106 (1074)
+.-|++|++.+. + ....+-.....++-++|++++++|+++..+ |.|..|.++. |++.. .......+-+.+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv 94 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV 94 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence 466999998632 2 122233456778899999999999987654 6788887764 54322 122223444789
Q ss_pred EEcCCCCEEEEEEC-CCeEEEEECCC-CeE---EEEEeCCCCC----------eEEEEEcCCCCEEEEEECC-CeEEEEE
Q 001462 107 EFHPFGEFFASGCM-DTNLKIWDIRK-KGC---IHTYKGHTRG----------INTIRFTPDGRWVVSGGFD-NVVKVWD 170 (1074)
Q Consensus 107 afSPdg~~LaSgS~-DGsI~IWDi~t-g~~---v~~l~~h~~~----------VtsLafSPdG~~LaSgs~D-GsI~VWD 170 (1074)
+++++|++++++.. .|.|.++-++. |.. +..+. |.+. +.+..|.|++++|++.+.. -.|.+|+
T Consensus 95 svd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~-h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~ 173 (346)
T COG2706 95 SVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVK-HTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYD 173 (346)
T ss_pred EECCCCCEEEEEEccCceEEEEEcccCCccccceeeee-cCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEE
Confidence 99999999999865 58899998865 332 22222 4443 8889999999999887742 3799999
Q ss_pred CCCCceEEEee---ecCCCeEEEEEcCCCcEEEEEe-CCCeEEEEECCCC-cEEEeeCC---------CCCCeEEEEEec
Q 001462 171 LTAGKLLHDFK---FHEGHIRSIDFHPLEFLLATGS-ADRTVKFWDLETF-ELIGSTRP---------EVTGVHAITFHP 236 (1074)
Q Consensus 171 l~tgk~v~~~~---~h~g~ItsLafSPdg~lLaTGS-~DGtI~IWDl~tg-~~i~t~~~---------~~~~ItsIafSP 236 (1074)
+..|++...-. ......+.|.|+|++++.++.+ -+++|.+|..... ..+..++. ...+...|.+++
T Consensus 174 ~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~ 253 (346)
T COG2706 174 LDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISP 253 (346)
T ss_pred cccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECC
Confidence 99886533211 2344579999999999988877 4899999998863 22222211 123467889999
Q ss_pred CCCEEEEEE--CCcEEEEEecCCeee----ecccc-CCceeeEEEecCCCEEEEEECC-CeEEEEEcCCCceeeeecCCC
Q 001462 237 DGRTLFSGF--DDNLKVYSWEPVICH----DSVDM-GWSTLGDLCINDGKLLGCSFYR-NSVGIWVADVSHVEPYGVGAP 308 (1074)
Q Consensus 237 DG~~LasGs--d~~I~Vwd~~s~~~~----~~l~~-~~s~~~~l~spDGklLAsgs~D-GsV~IWDld~~~l~~~~~~~~ 308 (1074)
||++|+++. .+.|.+|.++..... ..... +..+....+.++|++|+++..+ ..|.+|..+.....-..+..
T Consensus 254 dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~- 332 (346)
T COG2706 254 DGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRLTLLGR- 332 (346)
T ss_pred CCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEEeccc-
Confidence 999999974 346888888764322 11222 2235555667899999998865 57999987644433333222
Q ss_pred CCCCCceeEEEEc
Q 001462 309 EPDQSICTEVKFN 321 (1074)
Q Consensus 309 ~~~~~~ItsVaFS 321 (1074)
........||.|.
T Consensus 333 ~~~~p~Pvcv~f~ 345 (346)
T COG2706 333 YAVVPEPVCVKFL 345 (346)
T ss_pred ccCCCCcEEEEEc
Confidence 3445666777775
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=4.3e-10 Score=133.61 Aligned_cols=223 Identities=11% Similarity=0.063 Sum_probs=146.3
Q ss_pred EEEEecCCCCEEEEEEecCCCcEEEEEECCC--eEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEE-EEcCC--eE
Q 001462 8 LQEFVAHSANVNCISIGKKACRFLITGGDDQ--KVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLA-GASTG--VI 82 (1074)
Q Consensus 8 v~~L~gHs~~Vt~IafSPdg~~lLaTGs~DG--tV~IWDl~t~k~l~sl~~hs~~ItsLafSpdg~~Lat-Gs~DG--~I 82 (1074)
.+.+..+...+.+..|+|||..++++...++ .|++||+.+++... +...........|+|||+.|+. ...+| .|
T Consensus 210 ~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~I 288 (448)
T PRK04792 210 EQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKLALVLSKDGQPEI 288 (448)
T ss_pred ceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEEEEEEeCCCCeEE
Confidence 3445555667889999999955444444443 58888987766432 3222334457899999998875 45556 48
Q ss_pred EEEEcCCCeeEEEEeCCCCCeEEEEEcCCCCEEEEEEC-C--CeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEE
Q 001462 83 KLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCM-D--TNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVS 159 (1074)
Q Consensus 83 ~VWDl~tgk~i~tl~~h~~~VtsLafSPdg~~LaSgS~-D--GsI~IWDi~tg~~v~~l~~h~~~VtsLafSPdG~~LaS 159 (1074)
++||+.+++. ..+..+........|+|||++|+..+. + ..|+++|+.+++.... ..........+|+|||++|+.
T Consensus 289 y~~dl~tg~~-~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~L-t~~g~~~~~~~~SpDG~~l~~ 366 (448)
T PRK04792 289 YVVDIATKAL-TRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRL-TFEGEQNLGGSITPDGRSMIM 366 (448)
T ss_pred EEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEE-ecCCCCCcCeeECCCCCEEEE
Confidence 8889887765 344445556778899999998877654 2 3577788877764432 222223345799999999877
Q ss_pred EECC-C--eEEEEECCCCceEEEeeecCCCeEEEEEcCCCcEEEEEeCC-C--eEEEEECCCCcEEEeeCCCCCCeEEEE
Q 001462 160 GGFD-N--VVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSAD-R--TVKFWDLETFELIGSTRPEVTGVHAIT 233 (1074)
Q Consensus 160 gs~D-G--sI~VWDl~tgk~v~~~~~h~g~ItsLafSPdg~lLaTGS~D-G--tI~IWDl~tg~~i~t~~~~~~~ItsIa 233 (1074)
.+.+ + .|.++|+.+++... +... .......|+|+|..|+....+ | .|++++.. +.....+..+.+.+...+
T Consensus 367 ~~~~~g~~~I~~~dl~~g~~~~-lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~-G~~~~~l~~~~g~~~~p~ 443 (448)
T PRK04792 367 VNRTNGKFNIARQDLETGAMQV-LTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSID-GRFKARLPAGQGEVKSPA 443 (448)
T ss_pred EEecCCceEEEEEECCCCCeEE-ccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEECC-CCceEECcCCCCCcCCCc
Confidence 6543 3 56778888876533 2211 122345799999988776543 3 37777874 555555655556677788
Q ss_pred Eec
Q 001462 234 FHP 236 (1074)
Q Consensus 234 fSP 236 (1074)
|+|
T Consensus 444 Wsp 446 (448)
T PRK04792 444 WSP 446 (448)
T ss_pred cCC
Confidence 886
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.9e-09 Score=118.22 Aligned_cols=174 Identities=17% Similarity=0.284 Sum_probs=134.0
Q ss_pred CeEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcC-CCeeEEEEeCC--CCCeEEEEEcCCCCE
Q 001462 38 QKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLE-ESKMVRTLTGH--KSNCTAVEFHPFGEF 114 (1074)
Q Consensus 38 GtV~IWDl~t~k~l~sl~~hs~~ItsLafSpdg~~LatGs~DG~I~VWDl~-tgk~i~tl~~h--~~~VtsLafSPdg~~ 114 (1074)
..|.|||-....++..+. ...+|.++.+.++ .|++.- .+.|+||... +-+.++.+... .....+++-+.+..+
T Consensus 75 NkviIWDD~k~~~i~el~-f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~ 150 (346)
T KOG2111|consen 75 NKVIIWDDLKERCIIELS-FNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSL 150 (346)
T ss_pred ceEEEEecccCcEEEEEE-eccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceE
Confidence 469999976667776665 6789999999865 455543 5789999987 44555555422 223333333333344
Q ss_pred EEEEE-CCCeEEEEECCCCeE--EEEEeCCCCCeEEEEEcCCCCEEEEEECCCe-EEEEECCCCceEEEeee--cCCCeE
Q 001462 115 FASGC-MDTNLKIWDIRKKGC--IHTYKGHTRGINTIRFTPDGRWVVSGGFDNV-VKVWDLTAGKLLHDFKF--HEGHIR 188 (1074)
Q Consensus 115 LaSgS-~DGsI~IWDi~tg~~--v~~l~~h~~~VtsLafSPdG~~LaSgs~DGs-I~VWDl~tgk~v~~~~~--h~g~It 188 (1074)
|+.-+ .-|.|.|-|+..... ...+.+|...|.|++++.+|..+|+++..|+ |+|||..+|..+.+++- ....|+
T Consensus 151 LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy 230 (346)
T KOG2111|consen 151 LAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIY 230 (346)
T ss_pred EEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEE
Confidence 44433 359999999976554 4778899999999999999999999999986 78999999999999873 345699
Q ss_pred EEEEcCCCcEEEEEeCCCeEEEEECCC
Q 001462 189 SIDFHPLEFLLATGSADRTVKFWDLET 215 (1074)
Q Consensus 189 sLafSPdg~lLaTGS~DGtI~IWDl~t 215 (1074)
+|+|+|+..+|++++..|+|+||.++.
T Consensus 231 ~iaFSp~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 231 CIAFSPNSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred EEEeCCCccEEEEEcCCCeEEEEEeec
Confidence 999999999999999999999998874
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.30 E-value=9.5e-11 Score=128.22 Aligned_cols=261 Identities=15% Similarity=0.228 Sum_probs=175.1
Q ss_pred CCCCEEEEEEecCCCcEEEEEECCCeEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEEEEcCC---eEEEEEcCCC
Q 001462 14 HSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTG---VIKLWDLEES 90 (1074)
Q Consensus 14 Hs~~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~k~l~sl~~hs~~ItsLafSpdg~~LatGs~DG---~I~VWDl~tg 90 (1074)
-..++.++.|||||..+|.+...|-.|.+|.+.+.+... +.-....+..++|+++|++.+.++.-. .+.|......
T Consensus 90 g~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~-~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W 168 (447)
T KOG4497|consen 90 GQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL-LPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAW 168 (447)
T ss_pred CCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEE-ecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHH
Confidence 456899999999998888899999999999997765443 232345568999999999999887632 2223322334
Q ss_pred eeEEEEeCCCCCeEEEEEcCCCCEEEEEEC--CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEE
Q 001462 91 KMVRTLTGHKSNCTAVEFHPFGEFFASGCM--DTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKV 168 (1074)
Q Consensus 91 k~i~tl~~h~~~VtsLafSPdg~~LaSgS~--DGsI~IWDi~tg~~v~~l~~h~~~VtsLafSPdG~~LaSgs~DGsI~V 168 (1074)
..++.+.-..-..+.+.|+|||+.|++-.. +-.|+. +. ..-++..++|+|.+++|++|+.|+.+++
T Consensus 169 ~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~a-----------Ye-~~lG~k~v~wsP~~qflavGsyD~~lrv 236 (447)
T KOG4497|consen 169 ILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYA-----------YE-RGLGLKFVEWSPCNQFLAVGSYDQMLRV 236 (447)
T ss_pred HHHHhcCCCcccccCceECCCCcEEEEecchhhheeee-----------ee-eccceeEEEeccccceEEeeccchhhhh
Confidence 455666656667788999999988776321 112222 22 2346888999999999999999998887
Q ss_pred EECCCCce------------------------------------------------------------EEEee------e
Q 001462 169 WDLTAGKL------------------------------------------------------------LHDFK------F 182 (1074)
Q Consensus 169 WDl~tgk~------------------------------------------------------------v~~~~------~ 182 (1074)
.+--+.+. +..++ .
T Consensus 237 lnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pn 316 (447)
T KOG4497|consen 237 LNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPN 316 (447)
T ss_pred hceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCC
Confidence 54211100 00111 0
Q ss_pred cCCCeEEEEEcCCCcEEEEEeCC--CeEEEEECCCCcEEEeeCCCCCCeEEEEEecCCCEEEEEECC-cEEEEEecCCee
Q 001462 183 HEGHIRSIDFHPLEFLLATGSAD--RTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGFDD-NLKVYSWEPVIC 259 (1074)
Q Consensus 183 h~g~ItsLafSPdg~lLaTGS~D--GtI~IWDl~tg~~i~t~~~~~~~ItsIafSPDG~~LasGsd~-~I~Vwd~~s~~~ 259 (1074)
....+.-++|++|..++++-... ..+.+||+...+.-..+ ....+|....|+|....|+.+..+ .+++|......+
T Consensus 317 Pk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avL-iQk~piraf~WdP~~prL~vctg~srLY~W~psg~~~ 395 (447)
T KOG4497|consen 317 PKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVL-IQKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRV 395 (447)
T ss_pred cccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhh-hhccceeEEEeCCCCceEEEEcCCceEEEEcCCCceE
Confidence 12235678999999999886532 56999999876544333 345789999999998777775433 356665555555
Q ss_pred eeccccCCceeeEEEecCCCEEEEEECCC
Q 001462 260 HDSVDMGWSTLGDLCINDGKLLGCSFYRN 288 (1074)
Q Consensus 260 ~~~l~~~~s~~~~l~spDGklLAsgs~DG 288 (1074)
+..-..++.+....+.-+|..++..+.|.
T Consensus 396 V~vP~~GF~i~~l~W~~~g~~i~l~~kDa 424 (447)
T KOG4497|consen 396 VGVPKKGFNIQKLQWLQPGEFIVLCGKDA 424 (447)
T ss_pred EecCCCCceeeeEEecCCCcEEEEEcCCc
Confidence 55555555666666666777777666664
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.28 E-value=2e-09 Score=124.98 Aligned_cols=302 Identities=14% Similarity=0.217 Sum_probs=193.3
Q ss_pred CCEEEEEEecCCCcEEEEEECCCeEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEEEE-----c-----CCeEEEE
Q 001462 16 ANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGA-----S-----TGVIKLW 85 (1074)
Q Consensus 16 ~~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~k~l~sl~~hs~~ItsLafSpdg~~LatGs-----~-----DG~I~VW 85 (1074)
..++..+++++| ++++. +.++.++|++...+..+.... ...++++.|+|.|.+|.+-- . .-.+.+|
T Consensus 35 ~~~~v~~~S~~G-~lfA~-~~~~~v~i~~~~~~~~~lt~~--~~~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~ 110 (566)
T KOG2315|consen 35 RPCNVFAYSNNG-RLFAY-SDNQVVKVFEIATLKVVLCVE--LKKTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVY 110 (566)
T ss_pred CcceeEEEcCCC-cEEEE-EcCCeEEEEEccCCcEEEEec--cceeeeeeecccccccccccccccccCCCCCCCceeee
Confidence 346777888888 55554 556789999987776433333 23789999999999987621 1 2347799
Q ss_pred EcCCCeeEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCC--EEEE----
Q 001462 86 DLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGR--WVVS---- 159 (1074)
Q Consensus 86 Dl~tgk~i~tl~~h~~~VtsLafSPdg~~LaSgS~DGsI~IWDi~tg~~v~~l~~h~~~VtsLafSPdG~--~LaS---- 159 (1074)
+++++.....+......-++..|+.|..+.+-- ..+.+++|++...+.+.. +-|...|..+.++|.+. .+++
T Consensus 111 ~vet~~~~s~~q~k~Q~~W~~qfs~dEsl~arl-v~nev~f~~~~~f~~~~~-kl~~~~i~~f~lSpgp~~~~vAvyvPe 188 (566)
T KOG2315|consen 111 NVETGVQRSQIQKKMQNGWVPQFSIDESLAARL-VSNEVQFYDLGSFKTIQH-KLSVSGITMLSLSPGPEPPFVAVYVPE 188 (566)
T ss_pred eeccceehhheehhhhcCcccccccchhhhhhh-hcceEEEEecCCccceee-eeeccceeeEEecCCCCCceEEEEccC
Confidence 999866555554333333688999888754432 357799999877443222 23567799999998632 3433
Q ss_pred -EECCCeEEEEECCCCce---EEEeeecCCCeEEEEEcCCCc-EEEEEe--CC---------CeEEEEECCCCcEEEeeC
Q 001462 160 -GGFDNVVKVWDLTAGKL---LHDFKFHEGHIRSIDFHPLEF-LLATGS--AD---------RTVKFWDLETFELIGSTR 223 (1074)
Q Consensus 160 -gs~DGsI~VWDl~tgk~---v~~~~~h~g~ItsLafSPdg~-lLaTGS--~D---------GtI~IWDl~tg~~i~t~~ 223 (1074)
+|.-+.|+||...-... +..-......-..+.|++-|. +|+.++ -| .+++++++. |+....-.
T Consensus 189 ~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~-g~s~~V~L 267 (566)
T KOG2315|consen 189 KKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQ-GESVSVPL 267 (566)
T ss_pred CCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEec-CceEEEec
Confidence 34456899998762221 111111222335678888764 233222 23 368888888 44333333
Q ss_pred CCCCCeEEEEEecCCCEEEEEEC---CcEEEEEecCCeeeeccccCCceeeEEEecCCCEEEEEECC---CeEEEEEcCC
Q 001462 224 PEVTGVHAITFHPDGRTLFSGFD---DNLKVYSWEPVICHDSVDMGWSTLGDLCINDGKLLGCSFYR---NSVGIWVADV 297 (1074)
Q Consensus 224 ~~~~~ItsIafSPDG~~LasGsd---~~I~Vwd~~s~~~~~~l~~~~s~~~~l~spDGklLAsgs~D---GsV~IWDld~ 297 (1074)
...++|+++.|+++|+-+++... -.+.|||++-...+..-.. ......+.|.|++|+.+|.+ |.|.|||+..
T Consensus 268 ~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~v~df~eg--pRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n 345 (566)
T KOG2315|consen 268 LKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKPVFDFPEG--PRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPN 345 (566)
T ss_pred CCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCCEeEeCCCC--CccceEECCCCCEEEEeecCCCCCceEEEeccc
Confidence 45689999999999988887532 4588998875543332222 23455677999998888765 7899999865
Q ss_pred CceeeeecCCCCCCCCceeEEEEcCCCCcceeEEE
Q 001462 298 SHVEPYGVGAPEPDQSICTEVKFNPPGSHSLEKVG 332 (1074)
Q Consensus 298 ~~l~~~~~~~~~~~~~~ItsVaFSPDGs~~Lv~vl 332 (1074)
.+. +. .......+-..|||||.+++...-
T Consensus 346 ~K~--i~----~~~a~~tt~~eW~PdGe~flTATT 374 (566)
T KOG2315|consen 346 RKL--IA----KFKAANTTVFEWSPDGEYFLTATT 374 (566)
T ss_pred hhh--cc----ccccCCceEEEEcCCCcEEEEEec
Confidence 322 21 233455667899999997555443
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.4e-09 Score=125.50 Aligned_cols=298 Identities=13% Similarity=0.192 Sum_probs=206.2
Q ss_pred EEEEEecCCCcEEEEEECCCeEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEEEEc-----------CCeEEEEEc
Q 001462 19 NCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGAS-----------TGVIKLWDL 87 (1074)
Q Consensus 19 t~IafSPdg~~lLaTGs~DGtV~IWDl~t~k~l~sl~~hs~~ItsLafSpdg~~LatGs~-----------DG~I~VWDl 87 (1074)
+-+.|||.| .||++-..-| |.+|--.+...++.+. | ..|.-+.|||+.+||++-+. ...++|||+
T Consensus 214 tyv~wSP~G-TYL~t~Hk~G-I~lWGG~~f~r~~RF~-H-p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI 289 (698)
T KOG2314|consen 214 TYVRWSPKG-TYLVTFHKQG-IALWGGESFDRIQRFY-H-PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDI 289 (698)
T ss_pred eeEEecCCc-eEEEEEeccc-eeeecCccHHHHHhcc-C-CCceeeecCCccceEEEecCCccccCcccCCCceEEEEEc
Confidence 568899999 8999988766 8899755555555443 3 35788999999999998653 257999999
Q ss_pred CCCeeEEEEeCCCC--C-eEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEEC--
Q 001462 88 EESKMVRTLTGHKS--N-CTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGF-- 162 (1074)
Q Consensus 88 ~tgk~i~tl~~h~~--~-VtsLafSPdg~~LaSgS~DGsI~IWDi~tg~~v~~l~~h~~~VtsLafSPdG~~LaSgs~-- 162 (1074)
.+|...+.+....+ . -.-+.|+.|++|+|.-.. ..|.||+..+..++..-.-...+|....|+|.+..||.-..
T Consensus 290 ~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~ 368 (698)
T KOG2314|consen 290 ATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPET 368 (698)
T ss_pred cccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceeeecccccCCccccCcccCCCcceEEEEcccc
Confidence 99998888765322 2 334689999999998776 45999997765444332334567999999999988876432
Q ss_pred ---CCeEEEEECCCCceEEEeeecCCCeEEEEEcCCCcEEEEEeC-------CC---eEEEEECCCCcEEEeeCCCCCCe
Q 001462 163 ---DNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSA-------DR---TVKFWDLETFELIGSTRPEVTGV 229 (1074)
Q Consensus 163 ---DGsI~VWDl~tgk~v~~~~~h~g~ItsLafSPdg~lLaTGS~-------DG---tI~IWDl~tg~~i~t~~~~~~~I 229 (1074)
-..+.+..+.+++.++....+.-.=..|.|-.+|.+|+.--. .| .+.|+.++..............|
T Consensus 369 ~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~v 448 (698)
T KOG2314|consen 369 NNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESV 448 (698)
T ss_pred cCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchhe
Confidence 236777788888777766655544456778888888876421 11 24555555444333333345678
Q ss_pred EEEEEecCCCEEEEEEC----CcEEEEEecCCe----eeeccccCCceeeEEEecCCCEEEEEE---CCCeEEEEEcCCC
Q 001462 230 HAITFHPDGRTLFSGFD----DNLKVYSWEPVI----CHDSVDMGWSTLGDLCINDGKLLGCSF---YRNSVGIWVADVS 298 (1074)
Q Consensus 230 tsIafSPDG~~LasGsd----~~I~Vwd~~s~~----~~~~l~~~~s~~~~l~spDGklLAsgs---~DGsV~IWDld~~ 298 (1074)
...+|-|.|..+++-+. .++.+|.++... .+..++. .......++|.|++++.+. ..|.+.++|.+..
T Consensus 449 i~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk-~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a 527 (698)
T KOG2314|consen 449 IAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDK-KFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYA 527 (698)
T ss_pred eeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcc-cccceEEEcCCCcEEEEEEecccccceEEEecchh
Confidence 89999999988877332 358889887422 1222222 3445667789999988765 4688999998764
Q ss_pred ceeeeecCCCCCCCCceeEEEEcCCCCc
Q 001462 299 HVEPYGVGAPEPDQSICTEVKFNPPGSH 326 (1074)
Q Consensus 299 ~l~~~~~~~~~~~~~~ItsVaFSPDGs~ 326 (1074)
...... .+.....+.+.|-|.|.+
T Consensus 528 ~~k~~~----~~eh~~at~veWDPtGRY 551 (698)
T KOG2314|consen 528 DLKDTA----SPEHFAATEVEWDPTGRY 551 (698)
T ss_pred hhhhcc----CccccccccceECCCCCE
Confidence 444443 244566788999999983
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.1e-09 Score=126.85 Aligned_cols=261 Identities=16% Similarity=0.148 Sum_probs=177.7
Q ss_pred CCCCCeEEEEEcCCCCEEE-EEEcCCeEEEEEcCCCeeEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeE
Q 001462 56 GLSSPVDSVAFDSAEVLVL-AGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGC 134 (1074)
Q Consensus 56 ~hs~~ItsLafSpdg~~La-tGs~DG~I~VWDl~tgk~i~tl~~h~~~VtsLafSPdg~~LaSgS~DGsI~IWDi~tg~~ 134 (1074)
.+....+.|..+|||+|++ +|.+.-.|++||+..-.+...-.-....|.-.-++-|-..++.-..|.+|-+..- .|.
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak-~G~- 126 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAK-YGR- 126 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhh-cCe-
Confidence 4566778899999999765 5667889999999765433222112333444444444444555556777766542 222
Q ss_pred EEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeeecCCCeEEEEEcCCCcEEEEEeCCCeEEEEECC
Q 001462 135 IHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLE 214 (1074)
Q Consensus 135 v~~l~~h~~~VtsLafSPdG~~LaSgs~DGsI~VWDl~tgk~v~~~~~h~g~ItsLafSPdg~lLaTGS~DGtI~IWDl~ 214 (1074)
-..+. -...-..++++.-..-|++++....|+-+++..|..+.-|....+.++++..++-..+|++|+.+|.|.+||.+
T Consensus 127 hy~~R-IP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR 205 (703)
T KOG2321|consen 127 HYRTR-IPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPR 205 (703)
T ss_pred eeeee-cCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecch
Confidence 22222 22334567776544446666667789999999999999998888999999999999999999999999999999
Q ss_pred CCcEEEeeCC------CCC-----CeEEEEEecCCCEEEEE-ECCcEEEEEecCCeeeeccccCCc--eeeEEEec-C-C
Q 001462 215 TFELIGSTRP------EVT-----GVHAITFHPDGRTLFSG-FDDNLKVYSWEPVICHDSVDMGWS--TLGDLCIN-D-G 278 (1074)
Q Consensus 215 tg~~i~t~~~------~~~-----~ItsIafSPDG~~LasG-sd~~I~Vwd~~s~~~~~~l~~~~s--~~~~l~sp-D-G 278 (1074)
....+..+.. +.+ .|+++.|+.+|-.+++| +.|.+.|||+........-++.+. +....|.+ + +
T Consensus 206 ~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q 285 (703)
T KOG2321|consen 206 DKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQ 285 (703)
T ss_pred hhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCC
Confidence 7665554432 222 38999999999999998 567799999998776554444332 22222322 2 3
Q ss_pred CEEEEEECCCeEEEEEcCCCceeeeecCCCCCCCCceeEEEEcCCCC
Q 001462 279 KLLGCSFYRNSVGIWVADVSHVEPYGVGAPEPDQSICTEVKFNPPGS 325 (1074)
Q Consensus 279 klLAsgs~DGsV~IWDld~~~l~~~~~~~~~~~~~~ItsVaFSPDGs 325 (1074)
..+++. ....++|||-.+++..... ++ ...+..++|-|+++
T Consensus 286 ~~v~S~-Dk~~~kiWd~~~Gk~~asi----Ep-t~~lND~C~~p~sG 326 (703)
T KOG2321|consen 286 NKVVSM-DKRILKIWDECTGKPMASI----EP-TSDLNDFCFVPGSG 326 (703)
T ss_pred ceEEec-chHHhhhcccccCCceeec----cc-cCCcCceeeecCCc
Confidence 455544 5667899998766654443 22 34588999999888
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.1e-09 Score=127.89 Aligned_cols=188 Identities=17% Similarity=0.310 Sum_probs=156.7
Q ss_pred CCCcEEEEEECCCeEEEEECCCCceEEEeeC---CCCCeEEEEEc--------------------CCCCEEEEEEcCCeE
Q 001462 26 KACRFLITGGDDQKVNLWAIGKPTALMSLCG---LSSPVDSVAFD--------------------SAEVLVLAGASTGVI 82 (1074)
Q Consensus 26 dg~~lLaTGs~DGtV~IWDl~t~k~l~sl~~---hs~~ItsLafS--------------------pdg~~LatGs~DG~I 82 (1074)
.+..|+|....||.++||+...++....+.. ..+...+..|. .+...++.|...|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 3347899999999999999988877665532 23445555552 234578889999999
Q ss_pred EEEEcCCCeeEEEEe--CCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEE
Q 001462 83 KLWDLEESKMVRTLT--GHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSG 160 (1074)
Q Consensus 83 ~VWDl~tgk~i~tl~--~h~~~VtsLafSPdg~~LaSgS~DGsI~IWDi~tg~~v~~l~~h~~~VtsLafSPdG~~LaSg 160 (1074)
.+|++..|+....+. +|.+.|.++.|+.+-..|.+++.|+.+..|+...+..+..++.....+.+++.+|||..++++
T Consensus 83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~a 162 (541)
T KOG4547|consen 83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTA 162 (541)
T ss_pred EEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEec
Confidence 999999999888776 688999999999999999999999999999999999999999888899999999999999988
Q ss_pred ECCCeEEEEECCCCceEEEeeecCCCeEEEEEcCC-----CcEEEEE-eCCCeEEEEECCC
Q 001462 161 GFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPL-----EFLLATG-SADRTVKFWDLET 215 (1074)
Q Consensus 161 s~DGsI~VWDl~tgk~v~~~~~h~g~ItsLafSPd-----g~lLaTG-S~DGtI~IWDl~t 215 (1074)
+ +.|++||+.+++.+..|.+|.++|.++.|--+ |.+++++ ..+..|.+|-+..
T Consensus 163 s--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 163 S--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred c--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 6 68999999999999999999999999999876 5555544 4456677886653
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.7e-09 Score=126.35 Aligned_cols=187 Identities=18% Similarity=0.234 Sum_probs=159.5
Q ss_pred CCCCEEEEEEcCCeEEEEEcCCCeeEEEEeC---CCCCeEEEEEc------C--------------CCCEEEEEECCCeE
Q 001462 68 SAEVLVLAGASTGVIKLWDLEESKMVRTLTG---HKSNCTAVEFH------P--------------FGEFFASGCMDTNL 124 (1074)
Q Consensus 68 pdg~~LatGs~DG~I~VWDl~tgk~i~tl~~---h~~~VtsLafS------P--------------dg~~LaSgS~DGsI 124 (1074)
|.+.++|....||.+++||...++....+.. ..+.+.+..|. | +-..++-|...|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 4567899999999999999999988777653 23455566663 1 22367778889999
Q ss_pred EEEECCCCeEEEEEe--CCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeeecCCCeEEEEEcCCCcEEEEE
Q 001462 125 KIWDIRKKGCIHTYK--GHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATG 202 (1074)
Q Consensus 125 ~IWDi~tg~~v~~l~--~h~~~VtsLafSPdG~~LaSgs~DGsI~VWDl~tgk~v~~~~~h~g~ItsLafSPdg~lLaTG 202 (1074)
.+|+...++....+. .|.+.|.++.++.+-..|.+++.|+.+.+|+...+..+..++.....+.+++++|||..|+++
T Consensus 83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~a 162 (541)
T KOG4547|consen 83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTA 162 (541)
T ss_pred EEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEec
Confidence 999999998877775 588999999999998899999999999999999999999999888899999999999999988
Q ss_pred eCCCeEEEEECCCCcEEEeeCCCCCCeEEEEEecC-----CCEEEEE--ECCcEEEEEecC
Q 001462 203 SADRTVKFWDLETFELIGSTRPEVTGVHAITFHPD-----GRTLFSG--FDDNLKVYSWEP 256 (1074)
Q Consensus 203 S~DGtI~IWDl~tg~~i~t~~~~~~~ItsIafSPD-----G~~LasG--sd~~I~Vwd~~s 256 (1074)
+ +.|++||+++++.+..|.+|.++|+++.|--+ |.++.++ .+..+.+|-.+.
T Consensus 163 s--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 163 S--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred c--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 6 68999999999999999999999999999887 7888875 455688888765
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.3e-08 Score=117.74 Aligned_cols=264 Identities=14% Similarity=0.044 Sum_probs=171.6
Q ss_pred cEEEEEECCCeEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeeEEEEeCCCCCeEE-EE
Q 001462 29 RFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTA-VE 107 (1074)
Q Consensus 29 ~lLaTGs~DGtV~IWDl~t~k~l~sl~~hs~~ItsLafSpdg~~LatGs~DG~I~VWDl~tgk~i~tl~~h~~~Vts-La 107 (1074)
..+++++.+|.|..+|..+|+.+............... ++..+++++.+|.+..||..+|+.+...... ..+.+ ..
T Consensus 66 ~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~-~~~~~~p~ 142 (377)
T TIGR03300 66 GKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGA--DGGLVFVGTEKGEVIALDAEDGKELWRAKLS-SEVLSPPL 142 (377)
T ss_pred CEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEE--cCCEEEEEcCCCEEEEEECCCCcEeeeeccC-ceeecCCE
Confidence 36888888999999999999988776544322222222 4677888889999999999999988776533 22222 12
Q ss_pred EcCCCCEEEEEECCCeEEEEECCCCeEEEEEeCCCCCe-----EEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeee
Q 001462 108 FHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGI-----NTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKF 182 (1074)
Q Consensus 108 fSPdg~~LaSgS~DGsI~IWDi~tg~~v~~l~~h~~~V-----tsLafSPdG~~LaSgs~DGsI~VWDl~tgk~v~~~~~ 182 (1074)
+ .+..+++++.+|.|+.||..+|+.+..+......+ .+..+. +..++.+..+|.+..+|..+|+.+.....
T Consensus 143 v--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~--~~~v~~~~~~g~v~ald~~tG~~~W~~~~ 218 (377)
T TIGR03300 143 V--ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA--DGGVLVGFAGGKLVALDLQTGQPLWEQRV 218 (377)
T ss_pred E--ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE--CCEEEEECCCCEEEEEEccCCCEeeeecc
Confidence 2 24567777889999999999999888776433211 111121 34677888889999999999988766542
Q ss_pred cCC----Ce---EEEEEcC--CCcEEEEEeCCCeEEEEECCCCcEEEeeCCCCCCeEEEEEecCCCEEEE-EECCcEEEE
Q 001462 183 HEG----HI---RSIDFHP--LEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFS-GFDDNLKVY 252 (1074)
Q Consensus 183 h~g----~I---tsLafSP--dg~lLaTGS~DGtI~IWDl~tg~~i~t~~~~~~~ItsIafSPDG~~Las-Gsd~~I~Vw 252 (1074)
... .+ ..+.-+| .+..+++++.+|.++.||..+++.+...... ....... ++..+++ ..++.+..+
T Consensus 219 ~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~--~~~~p~~--~~~~vyv~~~~G~l~~~ 294 (377)
T TIGR03300 219 ALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDAS--SYQGPAV--DDNRLYVTDADGVVVAL 294 (377)
T ss_pred ccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeeccC--CccCceE--eCCEEEEECCCCeEEEE
Confidence 110 00 0011111 3557778888999999999999887766421 1122222 3444554 456778888
Q ss_pred EecCCeeeecc-ccCCceeeEEEecCCCEEEEEECCCeEEEEEcCCCceeeee
Q 001462 253 SWEPVICHDSV-DMGWSTLGDLCINDGKLLGCSFYRNSVGIWVADVSHVEPYG 304 (1074)
Q Consensus 253 d~~s~~~~~~l-~~~~s~~~~l~spDGklLAsgs~DGsV~IWDld~~~l~~~~ 304 (1074)
|..++...... ........... ..+..|++++.+|.|.+||...+++....
T Consensus 295 d~~tG~~~W~~~~~~~~~~ssp~-i~g~~l~~~~~~G~l~~~d~~tG~~~~~~ 346 (377)
T TIGR03300 295 DRRSGSELWKNDELKYRQLTAPA-VVGGYLVVGDFEGYLHWLSREDGSFVARL 346 (377)
T ss_pred ECCCCcEEEccccccCCccccCE-EECCEEEEEeCCCEEEEEECCCCCEEEEE
Confidence 88777655433 22211111111 14668888889999999999877766543
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=99.22 E-value=4.7e-08 Score=112.24 Aligned_cols=258 Identities=12% Similarity=0.023 Sum_probs=176.3
Q ss_pred CeEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEEEEc----------CCeEEEEEcCCCeeEEEEeCCC-------
Q 001462 38 QKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGAS----------TGVIKLWDLEESKMVRTLTGHK------- 100 (1074)
Q Consensus 38 GtV~IWDl~t~k~l~sl~~hs~~ItsLafSpdg~~LatGs~----------DG~I~VWDl~tgk~i~tl~~h~------- 100 (1074)
+.|.+.|..+++.+..+..-..+- .+ ++|+|+.|+++.. +..|.+||..+++.+..+....
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~ 104 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVG 104 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhcc
Confidence 899999999999888887544443 35 9999998888766 6899999999999998887422
Q ss_pred CCeEEEEEcCCCCEEEEEE-C-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC-CceE
Q 001462 101 SNCTAVEFHPFGEFFASGC-M-DTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTA-GKLL 177 (1074)
Q Consensus 101 ~~VtsLafSPdg~~LaSgS-~-DGsI~IWDi~tg~~v~~l~~h~~~VtsLafSPdG~~LaSgs~DGsI~VWDl~t-gk~v 177 (1074)
..-..++++|||+++++.. . +..|.++|+.+++.+..+.-. +...-...+.+..++. +.||......+.. |+..
T Consensus 105 ~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp-~~~~vy~t~e~~~~~~--~~Dg~~~~v~~d~~g~~~ 181 (352)
T TIGR02658 105 TYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVP-DCYHIFPTANDTFFMH--CRDGSLAKVGYGTKGNPK 181 (352)
T ss_pred CccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCC-CCcEEEEecCCccEEE--eecCceEEEEecCCCceE
Confidence 2234789999999999876 3 689999999999999888743 2333333433333322 2355544433322 2211
Q ss_pred -EEeee-cC--CCeE-EEEEcC-CCcEEEEEeCCCeEEEEECCC-----CcEEEeeCC-------CCCCeEEEEEecCCC
Q 001462 178 -HDFKF-HE--GHIR-SIDFHP-LEFLLATGSADRTVKFWDLET-----FELIGSTRP-------EVTGVHAITFHPDGR 239 (1074)
Q Consensus 178 -~~~~~-h~--g~It-sLafSP-dg~lLaTGS~DGtI~IWDl~t-----g~~i~t~~~-------~~~~ItsIafSPDG~ 239 (1074)
..... +. .++. .-.|.+ +|.++++... |.|.+.|+.. ...+..+.. ..+++.-++++++|+
T Consensus 182 ~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~ 260 (352)
T TIGR02658 182 IKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARD 260 (352)
T ss_pred EeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCC
Confidence 11110 11 0100 003445 7888877666 9999999643 223322211 223455699999999
Q ss_pred EEEEEE-----------CCcEEEEEecCCeeeeccccCCceeeEEEecCCC-EEEEEE-CCCeEEEEEcCCCcee
Q 001462 240 TLFSGF-----------DDNLKVYSWEPVICHDSVDMGWSTLGDLCINDGK-LLGCSF-YRNSVGIWVADVSHVE 301 (1074)
Q Consensus 240 ~LasGs-----------d~~I~Vwd~~s~~~~~~l~~~~s~~~~l~spDGk-lLAsgs-~DGsV~IWDld~~~l~ 301 (1074)
.+++.. .+.+.++|..+.+....+..+..+....+++||+ +|.+.. .++.|.++|....+..
T Consensus 261 ~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i 335 (352)
T TIGR02658 261 RIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKEL 335 (352)
T ss_pred EEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEE
Confidence 988842 1358999999999999999888999999999999 777665 5788999998766443
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.18 E-value=6e-08 Score=108.54 Aligned_cols=285 Identities=18% Similarity=0.249 Sum_probs=194.6
Q ss_pred CCeEEEEEcCCC--ee-EEEEeCCCCCeEEEEEcCCCCEEEEEEC---CCeEEEEECCC--CeEE--EEEeCCCCCeEEE
Q 001462 79 TGVIKLWDLEES--KM-VRTLTGHKSNCTAVEFHPFGEFFASGCM---DTNLKIWDIRK--KGCI--HTYKGHTRGINTI 148 (1074)
Q Consensus 79 DG~I~VWDl~tg--k~-i~tl~~h~~~VtsLafSPdg~~LaSgS~---DGsI~IWDi~t--g~~v--~~l~~h~~~VtsL 148 (1074)
+.-|.+|++.+. ++ ...+-...+..+-|+|+|++++|+++.. +|.|..|.+.. |... ........+...+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv 94 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV 94 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence 356999998732 21 1112235667889999999999988855 46777777664 4432 2222233445889
Q ss_pred EEcCCCCEEEEEEC-CCeEEEEECCC-CceEE--EeeecCCC----------eEEEEEcCCCcEEEEEeC-CCeEEEEEC
Q 001462 149 RFTPDGRWVVSGGF-DNVVKVWDLTA-GKLLH--DFKFHEGH----------IRSIDFHPLEFLLATGSA-DRTVKFWDL 213 (1074)
Q Consensus 149 afSPdG~~LaSgs~-DGsI~VWDl~t-gk~v~--~~~~h~g~----------ItsLafSPdg~lLaTGS~-DGtI~IWDl 213 (1074)
+++++|++++++.. .|.|.++-++. |.+.. ....|.+. +....|.|++++|++..- -..|.+|++
T Consensus 95 svd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~ 174 (346)
T COG2706 95 SVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDL 174 (346)
T ss_pred EECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEc
Confidence 99999999888764 67999999865 43321 22235554 888999999999988763 246999999
Q ss_pred CCCcEEEe---eCCCCCCeEEEEEecCCCEEEEE--ECCcEEEEEecCC--ee-----eecccc----CCceeeEEEecC
Q 001462 214 ETFELIGS---TRPEVTGVHAITFHPDGRTLFSG--FDDNLKVYSWEPV--IC-----HDSVDM----GWSTLGDLCIND 277 (1074)
Q Consensus 214 ~tg~~i~t---~~~~~~~ItsIafSPDG~~LasG--sd~~I~Vwd~~s~--~~-----~~~l~~----~~s~~~~l~spD 277 (1074)
..|..... ......+.+.|.|+|+|++.++- -++.|.+|.++.. .. +..++. .........++|
T Consensus 175 ~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~d 254 (346)
T COG2706 175 DDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPD 254 (346)
T ss_pred ccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCC
Confidence 97664322 11345667999999999988875 4678999999873 21 111111 122233445689
Q ss_pred CCEEEEEECC-CeEEEEEcC--CCceeeeecCCCCCCCCceeEEEEcCCCCcceeEEEEEeccCcceEEeecCCcccceE
Q 001462 278 GKLLGCSFYR-NSVGIWVAD--VSHVEPYGVGAPEPDQSICTEVKFNPPGSHSLEKVGIIGRSTSGFRSTSPDYETKDIK 354 (1074)
Q Consensus 278 GklLAsgs~D-GsV~IWDld--~~~l~~~~~~~~~~~~~~ItsVaFSPDGs~~Lv~vlavG~stG~~r~ivpD~et~eI~ 354 (1074)
|++|.++... ..|.+|.++ ++.+...... .-+........|+|.|+. +++.+.....+..+.-|-+++.+.
T Consensus 255 GrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~--~teg~~PR~F~i~~~g~~----Liaa~q~sd~i~vf~~d~~TG~L~ 328 (346)
T COG2706 255 GRFLYASNRGHDSIAVFSVDPDGGKLELVGIT--PTEGQFPRDFNINPSGRF----LIAANQKSDNITVFERDKETGRLT 328 (346)
T ss_pred CCEEEEecCCCCeEEEEEEcCCCCEEEEEEEe--ccCCcCCccceeCCCCCE----EEEEccCCCcEEEEEEcCCCceEE
Confidence 9999988532 467777764 3444444432 234455788999999996 556666666788888999999999
Q ss_pred EEeecCCCCccceee
Q 001462 355 TIYVDSTGGKPVASQ 369 (1074)
Q Consensus 355 ~i~iDs~gGepv~~~ 369 (1074)
....+..+++|+.+.
T Consensus 329 ~~~~~~~~p~Pvcv~ 343 (346)
T COG2706 329 LLGRYAVVPEPVCVK 343 (346)
T ss_pred ecccccCCCCcEEEE
Confidence 999988889988654
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.3e-09 Score=120.25 Aligned_cols=245 Identities=19% Similarity=0.306 Sum_probs=171.6
Q ss_pred CCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCCe-----eEEEEeCC------------CCCeEEEEEcCCCC--EEEEE
Q 001462 58 SSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESK-----MVRTLTGH------------KSNCTAVEFHPFGE--FFASG 118 (1074)
Q Consensus 58 s~~ItsLafSpdg~~LatGs~DG~I~VWDl~tgk-----~i~tl~~h------------~~~VtsLafSPdg~--~LaSg 118 (1074)
..-|.++.|...|.+|++|..+|.|.++.-.... ....++.| ...|..+.|.++++ .|+..
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls 104 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS 104 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence 4568899999999999999999999999644321 23334334 24588899998765 56666
Q ss_pred ECCCeEEEEECCCCeEE-----------------------------------EEE-eCCCCCeEEEEEcCCCCEEEEEEC
Q 001462 119 CMDTNLKIWDIRKKGCI-----------------------------------HTY-KGHTRGINTIRFTPDGRWVVSGGF 162 (1074)
Q Consensus 119 S~DGsI~IWDi~tg~~v-----------------------------------~~l-~~h~~~VtsLafSPdG~~LaSgs~ 162 (1074)
+.|.+|++|.+...... +.+ .+|...|.+|.++.|+..++++.
T Consensus 105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSAD- 183 (433)
T KOG1354|consen 105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSAD- 183 (433)
T ss_pred cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeecc-
Confidence 78999999987532110 001 24677789999999999888765
Q ss_pred CCeEEEEECCCCce---EEEeeecC-----CCeEEEEEcCC-CcEEEEEeCCCeEEEEECCCCcEE------Eee-----
Q 001462 163 DNVVKVWDLTAGKL---LHDFKFHE-----GHIRSIDFHPL-EFLLATGSADRTVKFWDLETFELI------GST----- 222 (1074)
Q Consensus 163 DGsI~VWDl~tgk~---v~~~~~h~-----g~ItsLafSPd-g~lLaTGS~DGtI~IWDl~tg~~i------~t~----- 222 (1074)
|-.|.+|++.--.. +..++.+. .-|++..|+|. .++++..+..|+|++.|++...+. ...
T Consensus 184 dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~ 263 (433)
T KOG1354|consen 184 DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPS 263 (433)
T ss_pred ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCc
Confidence 78899999864321 22233332 34788899995 577777888999999999843211 111
Q ss_pred -----CCCCCCeEEEEEecCCCEEEEEECCcEEEEEecC-Ceeeecc----------------ccCCceeeEEEecCCCE
Q 001462 223 -----RPEVTGVHAITFHPDGRTLFSGFDDNLKVYSWEP-VICHDSV----------------DMGWSTLGDLCINDGKL 280 (1074)
Q Consensus 223 -----~~~~~~ItsIafSPDG~~LasGsd~~I~Vwd~~s-~~~~~~l----------------~~~~s~~~~l~spDGkl 280 (1074)
......|..+.|+++|+|+++-.--++++||+.. ......+ +.-+....+.|+-++.+
T Consensus 264 ~rsffseiIsSISDvKFs~sGryilsRDyltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~ 343 (433)
T KOG1354|consen 264 SRSFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSY 343 (433)
T ss_pred chhhHHHHhhhhhceEEccCCcEEEEeccceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcce
Confidence 1112347889999999999998888999999953 2222222 12234566777788899
Q ss_pred EEEEECCCeEEEEEcCCCceeee
Q 001462 281 LGCSFYRNSVGIWVADVSHVEPY 303 (1074)
Q Consensus 281 LAsgs~DGsV~IWDld~~~l~~~ 303 (1074)
+++|++.+.+++++++.+..+..
T Consensus 344 v~TGsy~n~frvf~~~~gsk~d~ 366 (433)
T KOG1354|consen 344 VMTGSYNNVFRVFNLARGSKEDF 366 (433)
T ss_pred EecccccceEEEecCCCCcceee
Confidence 99999999999999765554443
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.9e-09 Score=115.74 Aligned_cols=221 Identities=19% Similarity=0.230 Sum_probs=161.2
Q ss_pred CCeEEEEECCCCceEE--E-eeCCCCCeEEEEEcC---CCC-EEEEEEcCCeEEEEEcCCCeeEEEEeCCC------CCe
Q 001462 37 DQKVNLWAIGKPTALM--S-LCGLSSPVDSVAFDS---AEV-LVLAGASTGVIKLWDLEESKMVRTLTGHK------SNC 103 (1074)
Q Consensus 37 DGtV~IWDl~t~k~l~--s-l~~hs~~ItsLafSp---dg~-~LatGs~DG~I~VWDl~tgk~i~tl~~h~------~~V 103 (1074)
.|.+.+|++.+.+... . .......+..+.|.. +|. .|+-+-..|.|.++..........+.+-. ...
T Consensus 45 ~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~ 124 (339)
T KOG0280|consen 45 SGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEA 124 (339)
T ss_pred ccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheee
Confidence 4778999987655433 1 223345677778863 444 56666778999999876554444443321 125
Q ss_pred EEEEEcCCCCEEEEEECCCeEEEEECCCCeEE--EEEeCCCCCeEEEEEcC-CCCEEEEEECCCeEEEEECC-CCceEEE
Q 001462 104 TAVEFHPFGEFFASGCMDTNLKIWDIRKKGCI--HTYKGHTRGINTIRFTP-DGRWVVSGGFDNVVKVWDLT-AGKLLHD 179 (1074)
Q Consensus 104 tsLafSPdg~~LaSgS~DGsI~IWDi~tg~~v--~~l~~h~~~VtsLafSP-dG~~LaSgs~DGsI~VWDl~-tgk~v~~ 179 (1074)
.++.|++.+..++++..+|.+.+-+....... +.++.|...++...|+. +.+.+.+|+.||.+..||++ .++.+..
T Consensus 125 lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~ 204 (339)
T KOG0280|consen 125 LSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWH 204 (339)
T ss_pred eEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeee
Confidence 67889999999999999999997766555443 47888999999999986 44688999999999999999 3444444
Q ss_pred -eeecCCCeEEEEEcC-CCcEEEEEeCCCeEEEEECCC-CcEEEeeCCCCCCeEEEEEecC--CCEEEEEECCcEEEEEe
Q 001462 180 -FKFHEGHIRSIDFHP-LEFLLATGSADRTVKFWDLET-FELIGSTRPEVTGVHAITFHPD--GRTLFSGFDDNLKVYSW 254 (1074)
Q Consensus 180 -~~~h~g~ItsLafSP-dg~lLaTGS~DGtI~IWDl~t-g~~i~t~~~~~~~ItsIafSPD--G~~LasGsd~~I~Vwd~ 254 (1074)
.+.|...|.++.-+| .+.+|++|+.|..|++||.++ ++++.... ..++|+.+.++|. ++.|+++..++.+|.+.
T Consensus 205 n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~-v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~ 283 (339)
T KOG0280|consen 205 NSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAK-VGGGVWRIKHHPEIFHRLLAACMHNGAKILDS 283 (339)
T ss_pred cceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCc-cccceEEEEecchhhhHHHHHHHhcCceEEEe
Confidence 557888899998887 578999999999999999995 55555433 3488999999995 45566666677778777
Q ss_pred cCCe
Q 001462 255 EPVI 258 (1074)
Q Consensus 255 ~s~~ 258 (1074)
+...
T Consensus 284 ~~~~ 287 (339)
T KOG0280|consen 284 SDKV 287 (339)
T ss_pred cccc
Confidence 6543
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.4e-08 Score=115.42 Aligned_cols=253 Identities=16% Similarity=0.072 Sum_probs=163.4
Q ss_pred cEEEEEECCCeEEEEECCCCceEEEeeCCCCCeEE-EEEcCCCCEEEEEEcCCeEEEEEcCCCeeEEEEeCCCCCeE---
Q 001462 29 RFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDS-VAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCT--- 104 (1074)
Q Consensus 29 ~lLaTGs~DGtV~IWDl~t~k~l~sl~~hs~~Its-LafSpdg~~LatGs~DG~I~VWDl~tgk~i~tl~~h~~~Vt--- 104 (1074)
..++.++.+|.++.||..+|+.+....... .+.+ ... .+..++.++.+|.|..||..+|+.+..+......+.
T Consensus 106 ~~v~v~~~~g~l~ald~~tG~~~W~~~~~~-~~~~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~ 182 (377)
T TIGR03300 106 GLVFVGTEKGEVIALDAEDGKELWRAKLSS-EVLSPPLV--ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRG 182 (377)
T ss_pred CEEEEEcCCCEEEEEECCCCcEeeeeccCc-eeecCCEE--ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecC
Confidence 467788889999999999999887665322 2221 111 345677788899999999999998887764332211
Q ss_pred --EEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeCCCC----C---eEEEEEcC--CCCEEEEEECCCeEEEEECCC
Q 001462 105 --AVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTR----G---INTIRFTP--DGRWVVSGGFDNVVKVWDLTA 173 (1074)
Q Consensus 105 --sLafSPdg~~LaSgS~DGsI~IWDi~tg~~v~~l~~h~~----~---VtsLafSP--dG~~LaSgs~DGsI~VWDl~t 173 (1074)
...+. +..++.+..+|.++.+|..+|+.+........ . ...+.-+| .+..+++++.+|.++.||..+
T Consensus 183 ~~sp~~~--~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~t 260 (377)
T TIGR03300 183 SASPVIA--DGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRS 260 (377)
T ss_pred CCCCEEE--CCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCC
Confidence 11222 34677788889999999999987765431100 0 00011111 345788888899999999999
Q ss_pred CceEEEeeecCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCCcEEEeeCCCCC-CeEEEEEecCCCEEEEE-ECCcEEE
Q 001462 174 GKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVT-GVHAITFHPDGRTLFSG-FDDNLKV 251 (1074)
Q Consensus 174 gk~v~~~~~h~g~ItsLafSPdg~lLaTGS~DGtI~IWDl~tg~~i~t~~~~~~-~ItsIafSPDG~~LasG-sd~~I~V 251 (1074)
|+.+...... ....... .+..+++++.||.|..+|..+++.+........ ...+... .+..|+++ .++.+++
T Consensus 261 G~~~W~~~~~--~~~~p~~--~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~ 334 (377)
T TIGR03300 261 GRVLWKRDAS--SYQGPAV--DDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHW 334 (377)
T ss_pred CcEEEeeccC--CccCceE--eCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEE
Confidence 9988776521 1222222 466788888999999999999988876533222 2222222 24455554 5677889
Q ss_pred EEecCCeeeeccccCCc-eeeEEEecCCCEEEEEECCCeEEEE
Q 001462 252 YSWEPVICHDSVDMGWS-TLGDLCINDGKLLGCSFYRNSVGIW 293 (1074)
Q Consensus 252 wd~~s~~~~~~l~~~~s-~~~~l~spDGklLAsgs~DGsV~IW 293 (1074)
++..+++....+..+.. ....-...+++ |+.++.||.|..|
T Consensus 335 ~d~~tG~~~~~~~~~~~~~~~sp~~~~~~-l~v~~~dG~l~~~ 376 (377)
T TIGR03300 335 LSREDGSFVARLKTDGSGIASPPVVVGDG-LLVQTRDGDLYAF 376 (377)
T ss_pred EECCCCCEEEEEEcCCCccccCCEEECCE-EEEEeCCceEEEe
Confidence 99888877766665442 22222334554 6667789988776
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.5e-09 Score=117.92 Aligned_cols=242 Identities=16% Similarity=0.242 Sum_probs=169.1
Q ss_pred CCCCEEEEEEecCCCcEEEEEECCCeEEEEECCCCc-----eEEEeeCCC------------CCeEEEEEcCCC--CEEE
Q 001462 14 HSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPT-----ALMSLCGLS------------SPVDSVAFDSAE--VLVL 74 (1074)
Q Consensus 14 Hs~~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~k-----~l~sl~~hs------------~~ItsLafSpdg--~~La 74 (1074)
..+-|.+|.|...| .+||+|..+|.|.+|.-.... ....+..|. ..|..+.|.+++ ..++
T Consensus 24 eadiis~vef~~~G-e~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FL 102 (433)
T KOG1354|consen 24 EADIISAVEFDHYG-ERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFL 102 (433)
T ss_pred hhcceeeEEeeccc-ceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEE
Confidence 34678999999999 899999999999999653322 122333332 458889999865 4677
Q ss_pred EEEcCCeEEEEEcCCCeeE-----------------------------------EEE-eCCCCCeEEEEEcCCCCEEEEE
Q 001462 75 AGASTGVIKLWDLEESKMV-----------------------------------RTL-TGHKSNCTAVEFHPFGEFFASG 118 (1074)
Q Consensus 75 tGs~DG~I~VWDl~tgk~i-----------------------------------~tl-~~h~~~VtsLafSPdg~~LaSg 118 (1074)
..+.|.+|++|.+...... +.+ ..|...|.++.++.|+..++++
T Consensus 103 lstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSA 182 (433)
T KOG1354|consen 103 LSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSA 182 (433)
T ss_pred EecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeec
Confidence 7788999999987532110 011 2577789999999999999987
Q ss_pred ECCCeEEEEECCCCeE---EEEEeCCC-----CCeEEEEEcCC-CCEEEEEECCCeEEEEECCCCceE----EEee----
Q 001462 119 CMDTNLKIWDIRKKGC---IHTYKGHT-----RGINTIRFTPD-GRWVVSGGFDNVVKVWDLTAGKLL----HDFK---- 181 (1074)
Q Consensus 119 S~DGsI~IWDi~tg~~---v~~l~~h~-----~~VtsLafSPd-G~~LaSgs~DGsI~VWDl~tgk~v----~~~~---- 181 (1074)
.|=.|.+|++.--.. +--++.+. .-|++..|+|. .++|+..+..|.|++.|++...+- ..+.
T Consensus 183 -DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEeped 261 (433)
T KOG1354|consen 183 -DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPED 261 (433)
T ss_pred -cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccC
Confidence 578899999863221 22223222 34788899994 457888889999999999853221 1111
Q ss_pred --------ecCCCeEEEEEcCCCcEEEEEeCCCeEEEEECC-CCcEEEeeCCCCC---------------CeEEEEEecC
Q 001462 182 --------FHEGHIRSIDFHPLEFLLATGSADRTVKFWDLE-TFELIGSTRPEVT---------------GVHAITFHPD 237 (1074)
Q Consensus 182 --------~h~g~ItsLafSPdg~lLaTGS~DGtI~IWDl~-tg~~i~t~~~~~~---------------~ItsIafSPD 237 (1074)
.--..|..+.|++.|+++++-.. -+|++||+. ..+++.++..|.. .--.++|+.+
T Consensus 262 p~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~ 340 (433)
T KOG1354|consen 262 PSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGN 340 (433)
T ss_pred CcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCC
Confidence 11235788999999999997654 689999994 4555555544421 1246789999
Q ss_pred CCEEEEEE-CCcEEEEEecCCe
Q 001462 238 GRTLFSGF-DDNLKVYSWEPVI 258 (1074)
Q Consensus 238 G~~LasGs-d~~I~Vwd~~s~~ 258 (1074)
+.++++|+ .+-+++|+...+.
T Consensus 341 ~~~v~TGsy~n~frvf~~~~gs 362 (433)
T KOG1354|consen 341 DSYVMTGSYNNVFRVFNLARGS 362 (433)
T ss_pred cceEecccccceEEEecCCCCc
Confidence 99999985 4558899866544
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=99.15 E-value=5.7e-08 Score=124.27 Aligned_cols=312 Identities=14% Similarity=0.159 Sum_probs=203.5
Q ss_pred CCCEEEEEEecCCCcEEEEEECCCeEEEE----ECCCCceEEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCC
Q 001462 15 SANVNCISIGKKACRFLITGGDDQKVNLW----AIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEES 90 (1074)
Q Consensus 15 s~~Vt~IafSPdg~~lLaTGs~DGtV~IW----Dl~t~k~l~sl~~hs~~ItsLafSpdg~~LatGs~DG~I~VWDl~tg 90 (1074)
.+.|.++.|-++. .-++.+..+|.|.++ +.... .+........+|.+++||||+..|+..+.+|.|.+.+-. .
T Consensus 75 ~~~ivs~~yl~d~-~~l~~~~~~Gdi~~~~~~~~~~~~-~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~-f 151 (928)
T PF04762_consen 75 NDKIVSFQYLADS-ESLCIALASGDIILVREDPDPDED-EIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRD-F 151 (928)
T ss_pred CCcEEEEEeccCC-CcEEEEECCceEEEEEccCCCCCc-eeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEecc-c
Confidence 4679999999988 668888889999998 44332 233334557899999999999999999999998887531 1
Q ss_pred eeE------------------------EEEeC------------------------CCCCeEEEEEcCCCCEEEEEEC--
Q 001462 91 KMV------------------------RTLTG------------------------HKSNCTAVEFHPFGEFFASGCM-- 120 (1074)
Q Consensus 91 k~i------------------------~tl~~------------------------h~~~VtsLafSPdg~~LaSgS~-- 120 (1074)
..+ ..|.| +...-..|+|-.||.|||+.+.
T Consensus 152 d~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~ 231 (928)
T PF04762_consen 152 DPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEP 231 (928)
T ss_pred eEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEc
Confidence 111 11100 2224467899999999999865
Q ss_pred -C---CeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEEC---CCeEEEEECCCCceEEEee----ecCCCeEE
Q 001462 121 -D---TNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGF---DNVVKVWDLTAGKLLHDFK----FHEGHIRS 189 (1074)
Q Consensus 121 -D---GsI~IWDi~tg~~v~~l~~h~~~VtsLafSPdG~~LaSgs~---DGsI~VWDl~tgk~v~~~~----~h~g~Its 189 (1074)
. ..|+||+ +.|........-.+--.+++|-|.|++|++... ...|.+|. ++|-.-.+|. .....|..
T Consensus 232 ~~~~~R~iRVy~-ReG~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfE-rNGLrhgeF~l~~~~~~~~v~~ 309 (928)
T PF04762_consen 232 ETGSRRVIRVYS-REGELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFE-RNGLRHGEFTLRFDPEEEKVIE 309 (928)
T ss_pred CCCceeEEEEEC-CCceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEe-cCCcEeeeEecCCCCCCceeeE
Confidence 3 4699999 457655555444444568999999998888764 34677777 4454433343 24567999
Q ss_pred EEEcCCCcEEEEEeCCCeEEEEECCCCcEEEe--eC-CCCCCeEEEEEecCC-CEEEEEEC-CcEEEEEecCCeeeeccc
Q 001462 190 IDFHPLEFLLATGSADRTVKFWDLETFELIGS--TR-PEVTGVHAITFHPDG-RTLFSGFD-DNLKVYSWEPVICHDSVD 264 (1074)
Q Consensus 190 LafSPdg~lLaTGS~DGtI~IWDl~tg~~i~t--~~-~~~~~ItsIafSPDG-~~LasGsd-~~I~Vwd~~s~~~~~~l~ 264 (1074)
+.|++++.+||....|. |.+|-..+....-+ +. .....+..+.|+|.. ..|.+... +.+..++|.-........
T Consensus 310 l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~ 388 (928)
T PF04762_consen 310 LAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGS 388 (928)
T ss_pred EEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCC
Confidence 99999999999987665 99999988764322 22 122335569999954 34555444 777776665322221111
Q ss_pred cCCceeeEEEecCCCEEEEEECCCeEEEEEcCCCceeeeecCCCCCCCCceeEEEEcCCCCcceeEEEEEeccCcceEEe
Q 001462 265 MGWSTLGDLCINDGKLLGCSFYRNSVGIWVADVSHVEPYGVGAPEPDQSICTEVKFNPPGSHSLEKVGIIGRSTSGFRST 344 (1074)
Q Consensus 265 ~~~s~~~~l~spDGklLAsgs~DGsV~IWDld~~~l~~~~~~~~~~~~~~ItsVaFSPDGs~~Lv~vlavG~stG~~r~i 344 (1074)
.. .|...+++. .+..+.+-.+....+.|-+..........|.+++|++++. ..++-+..|.+.++
T Consensus 389 ~~---------~D~g~vaVI-DG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~-----~~avl~~d~~l~~~ 453 (928)
T PF04762_consen 389 SP---------NDNGTVAVI-DGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNS-----RFAVLTSDGSLSIY 453 (928)
T ss_pred Cc---------cCceEEEEE-eCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCC-----eEEEEECCCCEEEE
Confidence 10 122223333 4446777666655555444333234578899999999988 36666666766666
Q ss_pred ecC
Q 001462 345 SPD 347 (1074)
Q Consensus 345 vpD 347 (1074)
.++
T Consensus 454 ~~~ 456 (928)
T PF04762_consen 454 EWD 456 (928)
T ss_pred Eec
Confidence 555
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.1e-08 Score=116.04 Aligned_cols=280 Identities=17% Similarity=0.243 Sum_probs=194.1
Q ss_pred eEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeeEEEEeCCCCCeEEEEEcCCCCEEEEEEC-----------CCeEEEEEC
Q 001462 61 VDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCM-----------DTNLKIWDI 129 (1074)
Q Consensus 61 ItsLafSpdg~~LatGs~DG~I~VWDl~tgk~i~tl~~h~~~VtsLafSPdg~~LaSgS~-----------DGsI~IWDi 129 (1074)
-+-+.|||.|.||++--..| |.+|--.+...++.+. | ..|.-+.|+|+.+||++-+. ...++|||+
T Consensus 213 etyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~-H-p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI 289 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFY-H-PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDI 289 (698)
T ss_pred eeeEEecCCceEEEEEeccc-eeeecCccHHHHHhcc-C-CCceeeecCCccceEEEecCCccccCcccCCCceEEEEEc
Confidence 46789999999999988777 8899876666666665 4 35788999999999998642 257999999
Q ss_pred CCCeEEEEEeCCCC---CeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeeecCCCeEEEEEcCCCcEEEEEeCC-
Q 001462 130 RKKGCIHTYKGHTR---GINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSAD- 205 (1074)
Q Consensus 130 ~tg~~v~~l~~h~~---~VtsLafSPdG~~LaSgs~DGsI~VWDl~tgk~v~~~~~h~g~ItsLafSPdg~lLaTGS~D- 205 (1074)
.+|.....+..... .-.-+.||.|++|+|.-.. ..|.||+..+..++..-...-..|....|+|.+++||.-...
T Consensus 290 ~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~ 368 (698)
T KOG2314|consen 290 ATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPET 368 (698)
T ss_pred cccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceeeecccccCCccccCcccCCCcceEEEEcccc
Confidence 99998777764222 2235689999999988765 578999987755543333344568899999999988875432
Q ss_pred ----CeEEEEECCCCcEEEeeCCCCCCeEEEEEecCCCEEEEEECC-----------cEEEEEecC-CeeeeccccCCce
Q 001462 206 ----RTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGFDD-----------NLKVYSWEP-VICHDSVDMGWST 269 (1074)
Q Consensus 206 ----GtI~IWDl~tg~~i~t~~~~~~~ItsIafSPDG~~LasGsd~-----------~I~Vwd~~s-~~~~~~l~~~~s~ 269 (1074)
..+.+..+.+++.+.....+.-.-..+.|-.+|.||++-.+. .+.||.++. ...+..+.....+
T Consensus 369 ~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~v 448 (698)
T KOG2314|consen 369 NNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESV 448 (698)
T ss_pred cCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchhe
Confidence 357888888888887766665555678899999999974321 144454443 3344555666666
Q ss_pred eeEEEecCCCEEEEEEC---CCeEEEEEcCCCceeeeecCCCCCCCCceeEEEEcCCCCcceeEEEEEeccCcceEEeec
Q 001462 270 LGDLCINDGKLLGCSFY---RNSVGIWVADVSHVEPYGVGAPEPDQSICTEVKFNPPGSHSLEKVGIIGRSTSGFRSTSP 346 (1074)
Q Consensus 270 ~~~l~spDGklLAsgs~---DGsV~IWDld~~~l~~~~~~~~~~~~~~ItsVaFSPDGs~~Lv~vlavG~stG~~r~ivp 346 (1074)
+...|-|.|..+++-+. ..++.+|.+......+-.+. ......++.|.|+|-|..+++..+. ...|-+.++-.
T Consensus 449 i~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk--~~dk~~~N~vfwsPkG~fvvva~l~--s~~g~l~F~D~ 524 (698)
T KOG2314|consen 449 IAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVK--ELDKKFANTVFWSPKGRFVVVAALV--SRRGDLEFYDT 524 (698)
T ss_pred eeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhh--hhcccccceEEEcCCCcEEEEEEec--ccccceEEEec
Confidence 67777788876655432 35789998875433333322 2345788999999999954443332 25555555544
Q ss_pred CC
Q 001462 347 DY 348 (1074)
Q Consensus 347 D~ 348 (1074)
++
T Consensus 525 ~~ 526 (698)
T KOG2314|consen 525 DY 526 (698)
T ss_pred ch
Confidence 44
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.5e-08 Score=114.87 Aligned_cols=291 Identities=16% Similarity=0.210 Sum_probs=197.9
Q ss_pred CCEEEEEEecCCCcEEEEEECCC---------------eEEEEECCCCceEEEeeCCCCC--eE-EEEEcCCCCEEEEEE
Q 001462 16 ANVNCISIGKKACRFLITGGDDQ---------------KVNLWAIGKPTALMSLCGLSSP--VD-SVAFDSAEVLVLAGA 77 (1074)
Q Consensus 16 ~~Vt~IafSPdg~~lLaTGs~DG---------------tV~IWDl~t~k~l~sl~~hs~~--It-sLafSpdg~~LatGs 77 (1074)
..|..+.|+|.+ .||.+-...+ .+.+||+.++..+..+.....+ .+ -+.|+-+..++|-.
T Consensus 72 ~~V~~~~fSP~~-kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv- 149 (561)
T COG5354 72 PDVKYLDFSPNE-KYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV- 149 (561)
T ss_pred CCceecccCccc-ceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-
Confidence 568999999999 8999886544 4999999999999988877666 66 78899888877765
Q ss_pred cCCeEEEEEcCCCee-EEEEeCC-CCCeEEEEEcCCCC--EEEE-----EECCCeEEEEECCCCeEEEEEeCCCCCeEEE
Q 001462 78 STGVIKLWDLEESKM-VRTLTGH-KSNCTAVEFHPFGE--FFAS-----GCMDTNLKIWDIRKKGCIHTYKGHTRGINTI 148 (1074)
Q Consensus 78 ~DG~I~VWDl~tgk~-i~tl~~h-~~~VtsLafSPdg~--~LaS-----gS~DGsI~IWDi~tg~~v~~l~~h~~~VtsL 148 (1074)
....+.|+++ ++.. ...+... ...|....|+|.++ .|++ .+..+.+++|.+..+..+....-....=..+
T Consensus 150 v~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qL 228 (561)
T COG5354 150 VGSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQL 228 (561)
T ss_pred ccCeEEEEec-CCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEE
Confidence 3457999997 3322 1111111 35688889998643 3343 2557889999998766654433222233578
Q ss_pred EEcCCCCEEEEEE-----------CCCeEEEEECCCCceEEEeeecCCCeEEEEEcCCCcEEEEEe--CCCeEEEEECCC
Q 001462 149 RFTPDGRWVVSGG-----------FDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGS--ADRTVKFWDLET 215 (1074)
Q Consensus 149 afSPdG~~LaSgs-----------~DGsI~VWDl~tgk~v~~~~~h~g~ItsLafSPdg~lLaTGS--~DGtI~IWDl~t 215 (1074)
.|.+.|++|++-- ....++++++....+.... ...++|...+|.|+++.+++.+ .+-.+.++|++.
T Consensus 229 kW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~-~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~ 307 (561)
T COG5354 229 KWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEK-DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRG 307 (561)
T ss_pred EEecCCceEEEEEEEeeecccceeccceEEEEeecccccceec-cccccceeeeecccCCceeEEecccccceeeccccc
Confidence 8999998876521 1246888888743333222 4578999999999877665544 677899999986
Q ss_pred CcEEEeeCCCCCCeEEEEEecCCCEEEE-EEC---CcEEEEEecCCeeeeccccCCceeeEEEecCCCEEEEEE------
Q 001462 216 FELIGSTRPEVTGVHAITFHPDGRTLFS-GFD---DNLKVYSWEPVICHDSVDMGWSTLGDLCINDGKLLGCSF------ 285 (1074)
Q Consensus 216 g~~i~t~~~~~~~ItsIafSPDG~~Las-Gsd---~~I~Vwd~~s~~~~~~l~~~~s~~~~l~spDGklLAsgs------ 285 (1074)
. ....+ ....=..+.|+|.+++++. |.+ +.+.+|+.........--.+.....+-|+|||+++.+..
T Consensus 308 N-l~~~~--Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n~s~~~wspd~qF~~~~~ts~k~~ 384 (561)
T COG5354 308 N-LRFYF--PEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLNTSYCDWSPDGQFYDTDTTSEKLR 384 (561)
T ss_pred c-eEEec--CCcccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecCCceEeeccCCceEEEecCCCcccc
Confidence 5 33333 3344477889999999988 433 458899876654433222233445566789999887764
Q ss_pred CCCeEEEEEcCCCceeeeecCCCCCCCCceeEEEEcCCCC
Q 001462 286 YRNSVGIWVADVSHVEPYGVGAPEPDQSICTEVKFNPPGS 325 (1074)
Q Consensus 286 ~DGsV~IWDld~~~l~~~~~~~~~~~~~~ItsVaFSPDGs 325 (1074)
.|..|.|||+.....- ..+.+.|-|.|.
T Consensus 385 ~Dn~i~l~~v~g~~~f------------el~~~~W~p~~~ 412 (561)
T COG5354 385 VDNSIKLWDVYGAKVF------------ELTNITWDPSGQ 412 (561)
T ss_pred cCcceEEEEecCchhh------------hhhhccccCCcc
Confidence 4788999998654322 345566777655
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.10 E-value=4e-10 Score=142.58 Aligned_cols=198 Identities=20% Similarity=0.371 Sum_probs=165.1
Q ss_pred EecCCCCEEEEEEecCCCcEEEEEECCCeEEEEECCCCceEEEeeC-CCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCC
Q 001462 11 FVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCG-LSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEE 89 (1074)
Q Consensus 11 L~gHs~~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~k~l~sl~~-hs~~ItsLafSpdg~~LatGs~DG~I~VWDl~t 89 (1074)
++.|-..|.++.=+|.. .+.++|+.||.|++|....++.+..+.. -...|+.+.|+.+|+.+.++..||.+.+|.+.
T Consensus 2204 ~k~~v~~v~r~~sHp~~-~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~- 2281 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSD-PYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS- 2281 (2439)
T ss_pred eecccCceeeecCCCCC-ceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-
Confidence 44566789999999988 6889999999999999988888777642 23789999999999999999999999999986
Q ss_pred CeeEEEEeCCCCCeEEEEEcCCCCEEEEEE---CCCeEEEEECCC---CeEEEEEeCCCCCeEEEEEcCCCCEEEEEECC
Q 001462 90 SKMVRTLTGHKSNCTAVEFHPFGEFFASGC---MDTNLKIWDIRK---KGCIHTYKGHTRGINTIRFTPDGRWVVSGGFD 163 (1074)
Q Consensus 90 gk~i~tl~~h~~~VtsLafSPdg~~LaSgS---~DGsI~IWDi~t---g~~v~~l~~h~~~VtsLafSPdG~~LaSgs~D 163 (1074)
.+.....++|.....++.|.. ..+++++ .++.+.+||.-- ..+++ ..|.++++++++-|....|++|+.+
T Consensus 2282 pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P~~qllisggr~ 2357 (2439)
T KOG1064|consen 2282 PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYAPKHQLLISGGRK 2357 (2439)
T ss_pred CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceee--eecCCCceEEEEcCcceEEEecCCc
Confidence 667777888999999999984 5667664 468899999642 22344 7799999999999999999999999
Q ss_pred CeEEEEECCCCceEEEeeecCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCCcEEEeeCC
Q 001462 164 NVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRP 224 (1074)
Q Consensus 164 GsI~VWDl~tgk~v~~~~~h~g~ItsLafSPdg~lLaTGS~DGtI~IWDl~tg~~i~t~~~ 224 (1074)
|.|++||++..++.+.++. ++ ...++++|+..|.|+||++.....+..+..
T Consensus 2358 G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~ 2408 (2439)
T KOG1064|consen 2358 GEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPS 2408 (2439)
T ss_pred CcEEEeehHHHHHHHHhhh---------hh-hhheeeccCcccceEEEEccccchhhcCch
Confidence 9999999998888877764 44 567899999999999999998877766543
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.8e-07 Score=105.94 Aligned_cols=256 Identities=16% Similarity=0.132 Sum_probs=165.7
Q ss_pred cCceEEEEecCCCCEEEEEEecCCCcEEEEEE---------CCCeEEEEECCCCceEEEeeCCC-------CCeEEEEEc
Q 001462 4 RGYKLQEFVAHSANVNCISIGKKACRFLITGG---------DDQKVNLWAIGKPTALMSLCGLS-------SPVDSVAFD 67 (1074)
Q Consensus 4 tG~~v~~L~gHs~~Vt~IafSPdg~~lLaTGs---------~DGtV~IWDl~t~k~l~sl~~hs-------~~ItsLafS 67 (1074)
+++.+..+..-..+- .+ ++||+..++++.+ .++.|.+||..+.+.+..+..-. .....++++
T Consensus 36 ~~~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls 113 (352)
T TIGR02658 36 AGRVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLT 113 (352)
T ss_pred CCEEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEEC
Confidence 344455554333332 24 9999965555666 68899999999999998876422 234478999
Q ss_pred CCCCEEEEEE-c-CCeEEEEEcCCCeeEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEE--E---EeC
Q 001462 68 SAEVLVLAGA-S-TGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIH--T---YKG 140 (1074)
Q Consensus 68 pdg~~LatGs-~-DG~I~VWDl~tgk~i~tl~~h~~~VtsLafSPdg~~LaSgS~DGsI~IWDi~tg~~v~--~---l~~ 140 (1074)
|||++|++.. . +..|.++|+.+++.+.++.-.. ...-...+. ..++ +.|.||......+....... . +..
T Consensus 114 ~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~-~~~vy~t~e-~~~~-~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~ 190 (352)
T TIGR02658 114 PDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD-CYHIFPTAN-DTFF-MHCRDGSLAKVGYGTKGNPKIKPTEVFHP 190 (352)
T ss_pred CCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC-CcEEEEecC-CccE-EEeecCceEEEEecCCCceEEeeeeeecC
Confidence 9999999876 3 6899999999999999887422 222223332 2222 22346665554443222111 1 111
Q ss_pred CCCCe-EEEEEcC-CCCEEEEEECCCeEEEEECCCC-----ceEEEeee-------cCCCeEEEEEcCCCcEEEEEe---
Q 001462 141 HTRGI-NTIRFTP-DGRWVVSGGFDNVVKVWDLTAG-----KLLHDFKF-------HEGHIRSIDFHPLEFLLATGS--- 203 (1074)
Q Consensus 141 h~~~V-tsLafSP-dG~~LaSgs~DGsI~VWDl~tg-----k~v~~~~~-------h~g~ItsLafSPdg~lLaTGS--- 203 (1074)
...++ ..-.|.+ +|+++++..+ |.|.+.|+... +....+.. ..+.+.-++++++++.+++..
T Consensus 191 ~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~ 269 (352)
T TIGR02658 191 EDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQR 269 (352)
T ss_pred CccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCC
Confidence 00000 0114455 8888877666 99999996443 22222211 223344599999999888843
Q ss_pred -------CCCeEEEEECCCCcEEEeeCCCCCCeEEEEEecCCC-EEEEE--ECCcEEEEEecCCeeeecc-ccC
Q 001462 204 -------ADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGR-TLFSG--FDDNLKVYSWEPVICHDSV-DMG 266 (1074)
Q Consensus 204 -------~DGtI~IWDl~tg~~i~t~~~~~~~ItsIafSPDG~-~LasG--sd~~I~Vwd~~s~~~~~~l-~~~ 266 (1074)
..+.|.++|..+++.+..+... ..+..++|++||+ +|++. .++.+.++|..+.+....+ ..+
T Consensus 270 ~~~thk~~~~~V~ViD~~t~kvi~~i~vG-~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i~~vg 342 (352)
T TIGR02658 270 AKWTHKTASRFLFVVDAKTGKRLRKIELG-HEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSVNQLG 342 (352)
T ss_pred ccccccCCCCEEEEEECCCCeEEEEEeCC-CceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeeeccCC
Confidence 1247999999999999887653 4689999999999 77764 3566999999998877776 443
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.7e-08 Score=117.37 Aligned_cols=232 Identities=14% Similarity=0.273 Sum_probs=161.6
Q ss_pred EEEEEecCCCcEEEEEECCCeEEEEECCCCceEEEeeCCCCCeEEEEEcCCC--CEEEE-----EEcCCeEEEEEcCCCe
Q 001462 19 NCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAE--VLVLA-----GASTGVIKLWDLEESK 91 (1074)
Q Consensus 19 t~IafSPdg~~lLaTGs~DGtV~IWDl~t~k~l~sl~~hs~~ItsLafSpdg--~~Lat-----Gs~DG~I~VWDl~tgk 91 (1074)
.++.|+.|. .|++--..+.+.+|++...+.+. -.-|...|..+.++|.+ ..+|+ +|.-+.|+||......
T Consensus 129 W~~qfs~dE--sl~arlv~nev~f~~~~~f~~~~-~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~ 205 (566)
T KOG2315|consen 129 WVPQFSIDE--SLAARLVSNEVQFYDLGSFKTIQ-HKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEG 205 (566)
T ss_pred cccccccch--hhhhhhhcceEEEEecCCcccee-eeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEecccccc
Confidence 588899987 23333345679999987744332 23467889999999863 34443 2334689999876322
Q ss_pred eEEEEe---CCCCCeEEEEEcCCCCE-EEEE--ECC---------CeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCE
Q 001462 92 MVRTLT---GHKSNCTAVEFHPFGEF-FASG--CMD---------TNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRW 156 (1074)
Q Consensus 92 ~i~tl~---~h~~~VtsLafSPdg~~-LaSg--S~D---------GsI~IWDi~tg~~v~~l~~h~~~VtsLafSPdG~~ 156 (1074)
....+. -....-..+.|++-|.- |+.+ .-| ..++++++....+.-.+. ..++|+++.|+++|+-
T Consensus 206 ~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~-k~GPVhdv~W~~s~~E 284 (566)
T KOG2315|consen 206 QHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLL-KEGPVHDVTWSPSGRE 284 (566)
T ss_pred ccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecC-CCCCceEEEECCCCCE
Confidence 211110 11233346788887763 2222 223 358888887444444443 5789999999999976
Q ss_pred EEE--EECCCeEEEEECCCCceEEEeeecCCCeEEEEEcCCCcEEEEEeCC---CeEEEEECCCCcEEEeeCCCCCCeEE
Q 001462 157 VVS--GGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSAD---RTVKFWDLETFELIGSTRPEVTGVHA 231 (1074)
Q Consensus 157 LaS--gs~DGsI~VWDl~tgk~v~~~~~h~g~ItsLafSPdg~lLaTGS~D---GtI~IWDl~tg~~i~t~~~~~~~Its 231 (1074)
|++ |..-..+.|||++ +.++..+ ..++-.++-|+|.|++|+.++-+ |.|-+||+.+.+++..+.... .+-
T Consensus 285 F~VvyGfMPAkvtifnlr-~~~v~df--~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~--tt~ 359 (566)
T KOG2315|consen 285 FAVVYGFMPAKVTIFNLR-GKPVFDF--PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAAN--TTV 359 (566)
T ss_pred EEEEEecccceEEEEcCC-CCEeEeC--CCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCC--ceE
Confidence 544 5567789999985 6777665 47788999999999999988754 789999999988888876654 367
Q ss_pred EEEecCCCEEEEEE-------CCcEEEEEecCCee
Q 001462 232 ITFHPDGRTLFSGF-------DDNLKVYSWEPVIC 259 (1074)
Q Consensus 232 IafSPDG~~LasGs-------d~~I~Vwd~~s~~~ 259 (1074)
+.|+|||.+++++. |++++||++.....
T Consensus 360 ~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~~l 394 (566)
T KOG2315|consen 360 FEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGSLL 394 (566)
T ss_pred EEEcCCCcEEEEEeccccEEecCCeEEEEecCcee
Confidence 89999999999863 77899999865443
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.06 E-value=2.3e-09 Score=131.50 Aligned_cols=195 Identities=20% Similarity=0.314 Sum_probs=156.3
Q ss_pred CEEEEEEecCCCcEEEEEECCCeEEEEECCCCceEEEeeCCCCC----eEEEEEcCCCCEEEEEEcCCeEEEEEcCCCee
Q 001462 17 NVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSP----VDSVAFDSAEVLVLAGASTGVIKLWDLEESKM 92 (1074)
Q Consensus 17 ~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~k~l~sl~~hs~~----ItsLafSpdg~~LatGs~DG~I~VWDl~tgk~ 92 (1074)
.|..-.+.-+. ..++.+..+..+.|||...+..+..+...... ..-+.++++.-++++|+.-|.|.+|++.....
T Consensus 89 wi~g~~l~~e~-k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~ 167 (967)
T KOG0974|consen 89 WIFGAKLFEEN-KKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNK 167 (967)
T ss_pred cccccchhhhc-ceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCC
Confidence 33333444444 56788888889999999877766665533321 12234566777899999999999999874444
Q ss_pred EEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEE-EEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEC
Q 001462 93 VRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIH-TYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDL 171 (1074)
Q Consensus 93 i~tl~~h~~~VtsLafSPdg~~LaSgS~DGsI~IWDi~tg~~v~-~l~~h~~~VtsLafSPdG~~LaSgs~DGsI~VWDl 171 (1074)
-..+.+|.+.|..+.|+-||.++++.+.|..+++|++.+.+... ..-+|...++.++|+|+ ++++++.|.+.++|+.
T Consensus 168 p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~ 245 (967)
T KOG0974|consen 168 PIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGV 245 (967)
T ss_pred cceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceEEEEEec
Confidence 44688999999999999999999999999999999999988765 55679999999999988 8999999999999976
Q ss_pred CCCceEEEeeecCC-CeEEEEEcCCCcEEEEEeCCCeEEEEECCC
Q 001462 172 TAGKLLHDFKFHEG-HIRSIDFHPLEFLLATGSADRTVKFWDLET 215 (1074)
Q Consensus 172 ~tgk~v~~~~~h~g-~ItsLafSPdg~lLaTGS~DGtI~IWDl~t 215 (1074)
. +..+..+..|.+ .|..++..++..++++++.||.+++||+..
T Consensus 246 ~-~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 246 N-GTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred c-cceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence 4 555557777754 589999999999999999999999999864
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.5e-08 Score=119.43 Aligned_cols=263 Identities=14% Similarity=0.162 Sum_probs=188.5
Q ss_pred CCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCCe---------------eEEEEeCCCCCeEEEEEcCCCCEEEEEECCC
Q 001462 58 SSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESK---------------MVRTLTGHKSNCTAVEFHPFGEFFASGCMDT 122 (1074)
Q Consensus 58 s~~ItsLafSpdg~~LatGs~DG~I~VWDl~tgk---------------~i~tl~~h~~~VtsLafSPdg~~LaSgS~DG 122 (1074)
.....|+.|+.+..++++|+.||.++|..+.+.. .-+++.+|.+.|.-+.|+.+.+.|-+...+|
T Consensus 14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~G 93 (1189)
T KOG2041|consen 14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSG 93 (1189)
T ss_pred CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCc
Confidence 3456899999999999999999999999876421 2356789999999999999999999999999
Q ss_pred eEEEEECCCCeEEEEE--eCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeeecCCCeEEEEEcCCCcEEE
Q 001462 123 NLKIWDIRKKGCIHTY--KGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLA 200 (1074)
Q Consensus 123 sI~IWDi~tg~~v~~l--~~h~~~VtsLafSPdG~~LaSgs~DGsI~VWDl~tgk~v~~~~~h~g~ItsLafSPdg~lLa 200 (1074)
.|.+|-+-.|.-...+ ....+-|.+++|..||..++....||.|.+=.+.... ++...........+.|++|...++
T Consensus 94 lIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNR-IwgKeLkg~~l~hv~ws~D~~~~L 172 (1189)
T KOG2041|consen 94 LIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNR-IWGKELKGQLLAHVLWSEDLEQAL 172 (1189)
T ss_pred eEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccce-ecchhcchheccceeecccHHHHH
Confidence 9999998776543222 2245668999999999999999999999887775433 322222223355788999999888
Q ss_pred EEeCCCeEEEEECCCC-------cEEE----eeCCCCCCeEEEEEe--------cCCCEEEEEECCc-EEEEEecCCeee
Q 001462 201 TGSADRTVKFWDLETF-------ELIG----STRPEVTGVHAITFH--------PDGRTLFSGFDDN-LKVYSWEPVICH 260 (1074)
Q Consensus 201 TGS~DGtI~IWDl~tg-------~~i~----t~~~~~~~ItsIafS--------PDG~~LasGsd~~-I~Vwd~~s~~~~ 260 (1074)
.+-.+|.+.+||.... .+.. .+......|..+.|. ||...|+++.+++ +.|..-......
T Consensus 173 f~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~P 252 (1189)
T KOG2041|consen 173 FKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEP 252 (1189)
T ss_pred hhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCC
Confidence 8889999999997631 1111 112222235566664 4677788876654 555544444444
Q ss_pred eccccCCceeeEEEecCCCEEEEEECC---------CeEEEEEcCCCceeeeecCCCCCCCCceeEEEEcCCCCc
Q 001462 261 DSVDMGWSTLGDLCINDGKLLGCSFYR---------NSVGIWVADVSHVEPYGVGAPEPDQSICTEVKFNPPGSH 326 (1074)
Q Consensus 261 ~~l~~~~s~~~~l~spDGklLAsgs~D---------GsV~IWDld~~~l~~~~~~~~~~~~~~ItsVaFSPDGs~ 326 (1074)
..++.+..+.+.-|.++|.+||.++.+ +.|++|..-+..+..+. -.+..|+.++|---|-+
T Consensus 253 vv~dtgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp~G~i~gtlk-----vpg~~It~lsWEg~gLr 322 (1189)
T KOG2041|consen 253 VVVDTGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSPYGHIVGTLK-----VPGSCITGLSWEGTGLR 322 (1189)
T ss_pred eEEecccEeecceecCCCcEEEEccCcccccCccccceEEEeccchhheEEEe-----cCCceeeeeEEcCCceE
Confidence 556667778888899999999988754 35666655444444443 34678999999875554
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.8e-08 Score=118.73 Aligned_cols=277 Identities=14% Similarity=0.129 Sum_probs=186.2
Q ss_pred CCCCEEEEEEecCCCcEEEEEECCCeEEEEECCCCc---------------eEEEeeCCCCCeEEEEEcCCCCEEEEEEc
Q 001462 14 HSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPT---------------ALMSLCGLSSPVDSVAFDSAEVLVLAGAS 78 (1074)
Q Consensus 14 Hs~~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~k---------------~l~sl~~hs~~ItsLafSpdg~~LatGs~ 78 (1074)
......|+.|+... .|+++||.||.+++..+.+.. .-+.+.+|...|..+.|+.+...|-+...
T Consensus 13 nnvkL~c~~WNke~-gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt 91 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKES-GYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDT 91 (1189)
T ss_pred CCceEEEEEEcccC-CeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCC
Confidence 34578999999987 799999999999999875421 12356799999999999999999999999
Q ss_pred CCeEEEEEcCCCeeEEEEe--CCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCE
Q 001462 79 TGVIKLWDLEESKMVRTLT--GHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRW 156 (1074)
Q Consensus 79 DG~I~VWDl~tgk~i~tl~--~h~~~VtsLafSPdg~~LaSgS~DGsI~IWDi~tg~~v~~l~~h~~~VtsLafSPdG~~ 156 (1074)
+|.|.||-+-.|.-...+. .....|.+++|+.+|..++..-.||.|.+=.+.... +..-.-.......+.|++|.+.
T Consensus 92 ~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNR-IwgKeLkg~~l~hv~ws~D~~~ 170 (1189)
T KOG2041|consen 92 SGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNR-IWGKELKGQLLAHVLWSEDLEQ 170 (1189)
T ss_pred CceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccce-ecchhcchheccceeecccHHH
Confidence 9999999987775333222 235668999999999999999999999887765433 2221112233568899999998
Q ss_pred EEEEECCCeEEEEECCCCc-----eEE--E----eeecCCCeEEEEEc--------CCCcEEEEEeCCCeEEEEECCCCc
Q 001462 157 VVSGGFDNVVKVWDLTAGK-----LLH--D----FKFHEGHIRSIDFH--------PLEFLLATGSADRTVKFWDLETFE 217 (1074)
Q Consensus 157 LaSgs~DGsI~VWDl~tgk-----~v~--~----~~~h~g~ItsLafS--------Pdg~lLaTGS~DGtI~IWDl~tg~ 217 (1074)
++.+-.+|.+.+||....- ... . +......|-.+.|. |+...|+++..+|.+.|..-.+..
T Consensus 171 ~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~ 250 (1189)
T KOG2041|consen 171 ALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDP 250 (1189)
T ss_pred HHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCC
Confidence 8888899999999975321 111 1 11112225555553 477899999999998887554433
Q ss_pred EEEeeCCCCCCeEEEEEecCCCEEEEEECCc----------EEEEEecCCeeeeccccCCceeeEEEecCCCEEEEEECC
Q 001462 218 LIGSTRPEVTGVHAITFHPDGRTLFSGFDDN----------LKVYSWEPVICHDSVDMGWSTLGDLCINDGKLLGCSFYR 287 (1074)
Q Consensus 218 ~i~t~~~~~~~ItsIafSPDG~~LasGsd~~----------I~Vwd~~s~~~~~~l~~~~s~~~~l~spDGklLAsgs~D 287 (1074)
....+.. .-.+..+.|+++|.+|++++.+. +.+|.- -+.....+......+..+++..+.+=+.-.-|
T Consensus 251 ~Pvv~dt-gm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp-~G~i~gtlkvpg~~It~lsWEg~gLriA~Avd 328 (1189)
T KOG2041|consen 251 EPVVVDT-GMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSP-YGHIVGTLKVPGSCITGLSWEGTGLRIAIAVD 328 (1189)
T ss_pred CCeEEec-ccEeecceecCCCcEEEEccCcccccCccccceEEEecc-chhheEEEecCCceeeeeEEcCCceEEEEEec
Confidence 3222222 25578899999999999854321 222221 12233444555555555665544433333356
Q ss_pred CeEEEEE
Q 001462 288 NSVGIWV 294 (1074)
Q Consensus 288 GsV~IWD 294 (1074)
+.|.+=+
T Consensus 329 sfiyfan 335 (1189)
T KOG2041|consen 329 SFIYFAN 335 (1189)
T ss_pred ceEEEEe
Confidence 6665443
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.7e-08 Score=111.76 Aligned_cols=247 Identities=18% Similarity=0.304 Sum_probs=179.7
Q ss_pred CceEEEEecCCCCEEEEEEecCCCcEEEEEECCCeEEEEEC-CCCceEEEee-CCCCCeEEEEEcCCCCEEEEEEcCCeE
Q 001462 5 GYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAI-GKPTALMSLC-GLSSPVDSVAFDSAEVLVLAGASTGVI 82 (1074)
Q Consensus 5 G~~v~~L~gHs~~Vt~IafSPdg~~lLaTGs~DGtV~IWDl-~t~k~l~sl~-~hs~~ItsLafSpdg~~LatGs~DG~I 82 (1074)
-..++.+.||.+.|+....-|.. .-+++.+.|.+++||-- +.++.-..+. ....+++++.+.++...|++|-..|.+
T Consensus 14 p~ll~~~eG~~d~vn~~~l~~~e-~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtv 92 (404)
T KOG1409|consen 14 PELLSKIEGSQDDVNAAILIPKE-EGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTV 92 (404)
T ss_pred hhhhhhhcCchhhhhhheeccCC-CCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceE
Confidence 34567789999999998887766 45899999999999953 4444433332 345788999999999999999999999
Q ss_pred EEEEcC----CCeeEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEE
Q 001462 83 KLWDLE----ESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVV 158 (1074)
Q Consensus 83 ~VWDl~----tgk~i~tl~~h~~~VtsLafSPdg~~LaSgS~DGsI~IWDi~tg~~v~~l~~h~~~VtsLafSPdG~~La 158 (1074)
.-+.+. .....+....|...+..+.|+-...++++.+.|..+.---.+.+..+..+.- .....++.|.-. +..
T Consensus 93 tefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~-~~~~t~~~~d~~--~~f 169 (404)
T KOG1409|consen 93 TEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNF-ETPASALQFDAL--YAF 169 (404)
T ss_pred EEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEe-eccCCCCceeeE--EEE
Confidence 988654 3445666778999999999998889999999888665444444443322210 011111222111 455
Q ss_pred EEECCCeEEEEEC--CCCceEEEeeecCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCCcE-EEeeCCCCCCeEEEEEe
Q 001462 159 SGGFDNVVKVWDL--TAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFEL-IGSTRPEVTGVHAITFH 235 (1074)
Q Consensus 159 Sgs~DGsI~VWDl--~tgk~v~~~~~h~g~ItsLafSPdg~lLaTGS~DGtI~IWDl~tg~~-i~t~~~~~~~ItsIafS 235 (1074)
.|...|.|.+..+ ..-.++..+.+|.+.+.+++|.+...+|++|..|..+.+||+-.++- .....+|...|..+...
T Consensus 170 vGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~ 249 (404)
T KOG1409|consen 170 VGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYA 249 (404)
T ss_pred ecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhh
Confidence 6666676655544 34567888999999999999999999999999999999999975443 44566777777777766
Q ss_pred cCCCEEEE-EECCcEEEEEec
Q 001462 236 PDGRTLFS-GFDDNLKVYSWE 255 (1074)
Q Consensus 236 PDG~~Las-Gsd~~I~Vwd~~ 255 (1074)
+--+.+++ +.|+.|.+|+++
T Consensus 250 ~~t~~l~S~~edg~i~~w~mn 270 (404)
T KOG1409|consen 250 QHTRQLISCGEDGGIVVWNMN 270 (404)
T ss_pred hhheeeeeccCCCeEEEEecc
Confidence 65555555 678889999986
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.97 E-value=4.6e-08 Score=116.58 Aligned_cols=239 Identities=18% Similarity=0.179 Sum_probs=180.3
Q ss_pred CCCCEEEEEEecCCCcEEEEEECCCeEEEEECCCCceEEEeeCCCCCeEEEEEcCCC------------CEEEEEEcCCe
Q 001462 14 HSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAE------------VLVLAGASTGV 81 (1074)
Q Consensus 14 Hs~~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~k~l~sl~~hs~~ItsLafSpdg------------~~LatGs~DG~ 81 (1074)
|...-.++.|+|.| +||-|+. ..|.+.|..+.+.+..+..|...|+.+.|.|.. -.|+++...|.
T Consensus 14 ~~sN~~A~Dw~~~G--LiAygsh-slV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~Gr 90 (1062)
T KOG1912|consen 14 SRSNRNAADWSPSG--LIAYGSH-SLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGR 90 (1062)
T ss_pred CcccccccccCccc--eEEEecC-ceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCc
Confidence 34457789999998 6666665 478889998999999999999999999998631 25666777899
Q ss_pred EEEEEcCCCeeEEEEeCCCCCeEEEEEcCC---C-CEEEEEECCCeEEEEECCCCeEEEEEeCCCCCeEEEEEcC-CCCE
Q 001462 82 IKLWDLEESKMVRTLTGHKSNCTAVEFHPF---G-EFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTP-DGRW 156 (1074)
Q Consensus 82 I~VWDl~tgk~i~tl~~h~~~VtsLafSPd---g-~~LaSgS~DGsI~IWDi~tg~~v~~l~~h~~~VtsLafSP-dG~~ 156 (1074)
|.+||...+..+..+..+..++..++|-+. . ..|++-.....|.+|+..+|+.++.+........|+.+.| |.+.
T Consensus 91 Iil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh 170 (1062)
T KOG1912|consen 91 IILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRH 170 (1062)
T ss_pred EEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcce
Confidence 999999999988999999999999999763 3 3566666778999999999999998887777788899999 6777
Q ss_pred EEEEECCCeEEEEECCC-------CceEEEeeecCC-------------------------CeEEEEEcCCCcEEEEEeC
Q 001462 157 VVSGGFDNVVKVWDLTA-------GKLLHDFKFHEG-------------------------HIRSIDFHPLEFLLATGSA 204 (1074)
Q Consensus 157 LaSgs~DGsI~VWDl~t-------gk~v~~~~~h~g-------------------------~ItsLafSPdg~lLaTGS~ 204 (1074)
|..-+..|.+.+.+.-. |+..+.-..|.. ....++|+|.-+-++....
T Consensus 171 ~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~ 250 (1062)
T KOG1912|consen 171 FCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITF 250 (1062)
T ss_pred EEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEe
Confidence 77777788887776532 222222222211 0123567887655555566
Q ss_pred CCeEEEEECCCCcEEEeeCCCCCCeEEEEEecCC--CEEEEE-ECCcEEEEEec
Q 001462 205 DRTVKFWDLETFELIGSTRPEVTGVHAITFHPDG--RTLFSG-FDDNLKVYSWE 255 (1074)
Q Consensus 205 DGtI~IWDl~tg~~i~t~~~~~~~ItsIafSPDG--~~LasG-sd~~I~Vwd~~ 255 (1074)
...+.++|++-..++....-..+++.-+.|-|++ ..|+++ .+|.+.+|--+
T Consensus 251 prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk 304 (1062)
T KOG1912|consen 251 PRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRK 304 (1062)
T ss_pred ccceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEee
Confidence 7889999999888888887777777888888875 456666 56667787654
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.7e-08 Score=123.94 Aligned_cols=268 Identities=15% Similarity=0.183 Sum_probs=177.5
Q ss_pred CCCCEEEEEEecCCCcEEEEEECCCeEEEEECCCCceEEEeeCCCCCeEEEEEc-CC------CCEEEEEEcCCeEEEEE
Q 001462 14 HSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFD-SA------EVLVLAGASTGVIKLWD 86 (1074)
Q Consensus 14 Hs~~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~k~l~sl~~hs~~ItsLafS-pd------g~~LatGs~DG~I~VWD 86 (1074)
|-+++++.++-.+ ||++|. .-.|.+||+..+..+..+.... .+.++ .. +.+++++..-+.+..-+
T Consensus 6 ~~~~l~~~~~~~~---~llag~-gp~i~~yd~~s~~li~~~~~~~----~~~~H~~e~~~~l~~~~~v~~~~~~~v~~~~ 77 (967)
T KOG0974|consen 6 SLGPLNLPQLVSD---YLLAGS-GPEILVYDLSSGCLIRHLIQSK----ILEVHRGEGKVKLLSGKIVTCAKSDEVYVKE 77 (967)
T ss_pred ccccccchhhccc---eeeecC-CCceEEeeCCchhHhhhhhhhc----ccccccccccceeccceEEEEEeecceeecc
Confidence 3456666666552 444443 3469999998776554432211 11111 12 22344443333232222
Q ss_pred cCCCeeEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeCCCC----CeEEEEEcCCCCEEEEEEC
Q 001462 87 LEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTR----GINTIRFTPDGRWVVSGGF 162 (1074)
Q Consensus 87 l~tgk~i~tl~~h~~~VtsLafSPdg~~LaSgS~DGsI~IWDi~tg~~v~~l~~h~~----~VtsLafSPdG~~LaSgs~ 162 (1074)
... +.... ..+.|....+.-+.+.++.++.+..+.+||...+.....+..... ...-+-++++.-++++|+.
T Consensus 78 ~~~-~~~~~---~s~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv 153 (967)
T KOG0974|consen 78 ASN-QIIER---FSDWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSV 153 (967)
T ss_pred hhh-hhhhh---ccccccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccc
Confidence 111 11111 122333345555677888888899999999988776666553221 1222345566678999999
Q ss_pred CCeEEEEECCCCceEEEeeecCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCCcEEE-eeCCCCCCeEEEEEecCCCEE
Q 001462 163 DNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIG-STRPEVTGVHAITFHPDGRTL 241 (1074)
Q Consensus 163 DGsI~VWDl~tgk~v~~~~~h~g~ItsLafSPdg~lLaTGS~DGtI~IWDl~tg~~i~-t~~~~~~~ItsIafSPDG~~L 241 (1074)
-+.|.+|+......-..+.+|.+.|.++.|+-||.++++.+.|.++++|++.+.+... ..-+|...+..++|+|. .+
T Consensus 154 ~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i 231 (967)
T KOG0974|consen 154 FGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RI 231 (967)
T ss_pred cccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--ee
Confidence 9999999987444333578999999999999999999999999999999999988776 66788899999999998 55
Q ss_pred EE-EECCcEEEEEecCCeeeeccc--cCCceeeEEEecCCCEEEEEECCCeEEEEEcC
Q 001462 242 FS-GFDDNLKVYSWEPVICHDSVD--MGWSTLGDLCINDGKLLGCSFYRNSVGIWVAD 296 (1074)
Q Consensus 242 as-Gsd~~I~Vwd~~s~~~~~~l~--~~~s~~~~l~spDGklLAsgs~DGsV~IWDld 296 (1074)
++ |-|-..++|.++..... .+. ....+...+..++.-++++++.||.+++|++.
T Consensus 232 ~t~gedctcrvW~~~~~~l~-~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~ 288 (967)
T KOG0974|consen 232 ITVGEDCTCRVWGVNGTQLE-VYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLN 288 (967)
T ss_pred EEeccceEEEEEecccceeh-hhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhh
Confidence 55 56667999988765544 232 22344455555666788899999999999874
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.2e-07 Score=109.76 Aligned_cols=203 Identities=7% Similarity=-0.088 Sum_probs=133.1
Q ss_pred CceEEEEecCCCCEEEEEEecCCCcEEEEEEC---CCeEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEEEEc---
Q 001462 5 GYKLQEFVAHSANVNCISIGKKACRFLITGGD---DQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGAS--- 78 (1074)
Q Consensus 5 G~~v~~L~gHs~~Vt~IafSPdg~~lLaTGs~---DGtV~IWDl~t~k~l~sl~~hs~~ItsLafSpdg~~LatGs~--- 78 (1074)
|.-.+.+... +.+..-.|+|||.++++..+. +..|+++|+.+++..... ...+......|+|||+.|+....
T Consensus 178 g~~~~~~~~~-~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt-~~~g~~~~~~~SPDG~~la~~~~~~g 255 (419)
T PRK04043 178 LTYQKVIVKG-GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIA-SSQGMLVVSDVSKDGSKLLLTMAPKG 255 (419)
T ss_pred CCceeEEccC-CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEe-cCCCcEEeeEECCCCCEEEEEEccCC
Confidence 3334444433 367889999999544553333 356888999877654433 34555677889999987765433
Q ss_pred CCeEEEEEcCCCeeEEEEeCCCCCeEEEEEcCCCCEEEEEECC-C--eEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCC
Q 001462 79 TGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMD-T--NLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGR 155 (1074)
Q Consensus 79 DG~I~VWDl~tgk~i~tl~~h~~~VtsLafSPdg~~LaSgS~D-G--sI~IWDi~tg~~v~~l~~h~~~VtsLafSPdG~ 155 (1074)
+..|.++|+.+++. ..+..+........|+|||+.|+..+.. | .|+++|+.++........ .. ....|+|||+
T Consensus 256 ~~~Iy~~dl~~g~~-~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~-g~--~~~~~SPDG~ 331 (419)
T PRK04043 256 QPDIYLYDTNTKTL-TQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH-GK--NNSSVSTYKN 331 (419)
T ss_pred CcEEEEEECCCCcE-EEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC-CC--cCceECCCCC
Confidence 35788889887764 3444444434567899999988777642 2 688999987776443321 11 2348999999
Q ss_pred EEEEEECC---------CeEEEEECCCCceEEEeeecCCCeEEEEEcCCCcEEEEEeCCC---eEEEEECCC
Q 001462 156 WVVSGGFD---------NVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADR---TVKFWDLET 215 (1074)
Q Consensus 156 ~LaSgs~D---------GsI~VWDl~tgk~v~~~~~h~g~ItsLafSPdg~lLaTGS~DG---tI~IWDl~t 215 (1074)
+|+..... ..|.+.|+.++... .+... +......|+|||..|+....++ .|.++++..
T Consensus 332 ~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~-~LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g 401 (419)
T PRK04043 332 YIVYSSRETNNEFGKNTFNLYLISTNSDYIR-RLTAN-GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNY 401 (419)
T ss_pred EEEEEEcCCCcccCCCCcEEEEEECCCCCeE-ECCCC-CCcCCeEECCCCCEEEEEEccCCcEEEEEEecCC
Confidence 98876643 37889999887653 33322 2334588999999887766432 366777754
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=98.96 E-value=4.2e-07 Score=103.87 Aligned_cols=171 Identities=17% Similarity=0.175 Sum_probs=134.3
Q ss_pred cEEEEEECCCeEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEEEEcCC-eEEEEEcCCCeeEEEEeCCCCCeEEEE
Q 001462 29 RFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTG-VIKLWDLEESKMVRTLTGHKSNCTAVE 107 (1074)
Q Consensus 29 ~lLaTGs~DGtV~IWDl~t~k~l~sl~~hs~~ItsLafSpdg~~LatGs~DG-~I~VWDl~tgk~i~tl~~h~~~VtsLa 107 (1074)
.+++..+. |...|.+...+-.+. -++...|.-..+..++.-++.|..|| .+-|+|.++++. +.+...-+.|.++.
T Consensus 333 d~ia~VSR-GkaFi~~~~~~~~iq--v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~-kr~e~~lg~I~av~ 408 (668)
T COG4946 333 DYIALVSR-GKAFIMRPWDGYSIQ--VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEV-KRIEKDLGNIEAVK 408 (668)
T ss_pred cEEEEEec-CcEEEECCCCCeeEE--cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceE-EEeeCCccceEEEE
Confidence 56666654 677777765554433 35677788888888888899999999 899999987765 44455778899999
Q ss_pred EcCCCCEEEEEECCCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCC----eEEEEECCCCceEEEeeec
Q 001462 108 FHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDN----VVKVWDLTAGKLLHDFKFH 183 (1074)
Q Consensus 108 fSPdg~~LaSgS~DGsI~IWDi~tg~~v~~l~~h~~~VtsLafSPdG~~LaSgs~DG----sI~VWDl~tgk~v~~~~~h 183 (1074)
.+++|++++++.....|.++|+.++.....-+...+-|..+.|+|+++++|.+--+| .|++||+..++....-. .
T Consensus 409 vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT-~ 487 (668)
T COG4946 409 VSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTT-P 487 (668)
T ss_pred EcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecC-C
Confidence 999999999999889999999999987666566677899999999999999877665 79999998887655433 3
Q ss_pred CCCeEEEEEcCCCcEEEEEeC
Q 001462 184 EGHIRSIDFHPLEFLLATGSA 204 (1074)
Q Consensus 184 ~g~ItsLafSPdg~lLaTGS~ 204 (1074)
.+.=.+-+|.|++++|+.-+.
T Consensus 488 ta~DfsPaFD~d~ryLYfLs~ 508 (668)
T COG4946 488 TAYDFSPAFDPDGRYLYFLSA 508 (668)
T ss_pred cccccCcccCCCCcEEEEEec
Confidence 333456789999998887653
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.95 E-value=3.6e-09 Score=134.19 Aligned_cols=195 Identities=16% Similarity=0.298 Sum_probs=156.2
Q ss_pred CCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeeEEEEe-CCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEE
Q 001462 59 SPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLT-GHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHT 137 (1074)
Q Consensus 59 ~~ItsLafSpdg~~LatGs~DG~I~VWDl~tgk~i~tl~-~h~~~VtsLafSPdg~~LaSgS~DGsI~IWDi~tg~~v~~ 137 (1074)
..|.++.=+|...+.++|+.||.|++|.+..++.+..+. .....|+.+.|+.+|+.+..+..||.+.+|.+. .+....
T Consensus 2209 ~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s 2287 (2439)
T KOG1064|consen 2209 ENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PKPYTS 2287 (2439)
T ss_pred CceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-Ccceec
Confidence 456677778888899999999999999999888777665 234789999999999999999999999999976 666777
Q ss_pred EeCCCCCeEEEEEcCCCCEEEEEE---CCCeEEEEECCCC-ceEEEeeecCCCeEEEEEcCCCcEEEEEeCCCeEEEEEC
Q 001462 138 YKGHTRGINTIRFTPDGRWVVSGG---FDNVVKVWDLTAG-KLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDL 213 (1074)
Q Consensus 138 l~~h~~~VtsLafSPdG~~LaSgs---~DGsI~VWDl~tg-k~v~~~~~h~g~ItsLafSPdg~lLaTGS~DGtI~IWDl 213 (1074)
.+.|......+.|-. ..+++++ .++.+.+||..-. ..-....+|.+.++++++.|...+|++|+.+|.|++||+
T Consensus 2288 ~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~ 2365 (2439)
T KOG1064|consen 2288 WQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGRKGEVCLFDI 2365 (2439)
T ss_pred cccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCCcCcEEEeeh
Confidence 788998899999875 5566655 4689999997432 222222789999999999999999999999999999999
Q ss_pred CCCcEEEeeCCCCCCeEEEEEecCCCEEEEE-ECCcEEEEEecCCeeeeccccC
Q 001462 214 ETFELIGSTRPEVTGVHAITFHPDGRTLFSG-FDDNLKVYSWEPVICHDSVDMG 266 (1074)
Q Consensus 214 ~tg~~i~t~~~~~~~ItsIafSPDG~~LasG-sd~~I~Vwd~~s~~~~~~l~~~ 266 (1074)
+..+.++.+.. ++ ...+++.| +.|.++||++........++..
T Consensus 2366 rqrql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~e 2409 (2439)
T KOG1064|consen 2366 RQRQLRHTFQA---------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPSE 2409 (2439)
T ss_pred HHHHHHHHhhh---------hh-hhheeeccCcccceEEEEccccchhhcCchh
Confidence 98887776654 44 45677776 5778999999877665555443
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=98.94 E-value=6.6e-07 Score=116.41 Aligned_cols=238 Identities=13% Similarity=0.159 Sum_probs=159.5
Q ss_pred EEEEEecCCCcEEEEEECCCeEEEEECCCCceEEEeeC-C-------------CCCeEEEEEcCCCCEEEEEEc-CCeEE
Q 001462 19 NCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCG-L-------------SSPVDSVAFDSAEVLVLAGAS-TGVIK 83 (1074)
Q Consensus 19 t~IafSPdg~~lLaTGs~DGtV~IWDl~t~k~l~sl~~-h-------------s~~ItsLafSpdg~~LatGs~-DG~I~ 83 (1074)
..+++++.+..++++-..++.|.+||.. +..+..+.+ . -.....++|+++++.|+++.. .+.|+
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir 649 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR 649 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence 4678887654677777788999999975 444433322 1 123578999998887666544 57899
Q ss_pred EEEcCCCeeEEEEeCC-----------------CCCeEEEEEcCC-CCEEEEEECCCeEEEEECCCCeEEEEEeCC----
Q 001462 84 LWDLEESKMVRTLTGH-----------------KSNCTAVEFHPF-GEFFASGCMDTNLKIWDIRKKGCIHTYKGH---- 141 (1074)
Q Consensus 84 VWDl~tgk~i~tl~~h-----------------~~~VtsLafSPd-g~~LaSgS~DGsI~IWDi~tg~~v~~l~~h---- 141 (1074)
++|+.++. +.++.+. -..-..++|+|+ +..+++...++.|++||..++... .+.+.
T Consensus 650 ~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~ 727 (1057)
T PLN02919 650 EIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYER 727 (1057)
T ss_pred EEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCccc
Confidence 99987765 3333210 112357999994 555566667889999998776542 22111
Q ss_pred -----------CCCeEEEEEcCCCCEEE-EEECCCeEEEEECCCCceEEEee-------------ec--------CCCeE
Q 001462 142 -----------TRGINTIRFTPDGRWVV-SGGFDNVVKVWDLTAGKLLHDFK-------------FH--------EGHIR 188 (1074)
Q Consensus 142 -----------~~~VtsLafSPdG~~La-Sgs~DGsI~VWDl~tgk~v~~~~-------------~h--------~g~It 188 (1074)
-.....++|+|+|.+|+ +-..++.|++||+.++....... .+ -....
T Consensus 728 ~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~ 807 (1057)
T PLN02919 728 NLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPL 807 (1057)
T ss_pred cCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCc
Confidence 12356799999998554 44567899999998765321110 00 11246
Q ss_pred EEEEcCCCcEEEEEeCCCeEEEEECCCCcEEEeeCC-------------CCCCeEEEEEecCCCEEEEE-ECCcEEEEEe
Q 001462 189 SIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRP-------------EVTGVHAITFHPDGRTLFSG-FDDNLKVYSW 254 (1074)
Q Consensus 189 sLafSPdg~lLaTGS~DGtI~IWDl~tg~~i~t~~~-------------~~~~ItsIafSPDG~~LasG-sd~~I~Vwd~ 254 (1074)
.++|+++|.++++-..++.|++||..++........ .......++++++|+++++. .++.|++|++
T Consensus 808 Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~ 887 (1057)
T PLN02919 808 GVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDL 887 (1057)
T ss_pred eeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEEC
Confidence 889999999888888899999999987765432211 11246789999999977774 5667999999
Q ss_pred cCCee
Q 001462 255 EPVIC 259 (1074)
Q Consensus 255 ~s~~~ 259 (1074)
.+...
T Consensus 888 ~~~~~ 892 (1057)
T PLN02919 888 NKGEA 892 (1057)
T ss_pred CCCcc
Confidence 87643
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=98.93 E-value=3.5e-07 Score=97.93 Aligned_cols=219 Identities=17% Similarity=0.041 Sum_probs=143.5
Q ss_pred CCeEEEEEcCCCeeEEEEeCCCCCeEEEE--EcCCCCEEEEEECCCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCE
Q 001462 79 TGVIKLWDLEESKMVRTLTGHKSNCTAVE--FHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRW 156 (1074)
Q Consensus 79 DG~I~VWDl~tgk~i~tl~~h~~~VtsLa--fSPdg~~LaSgS~DGsI~IWDi~tg~~v~~l~~h~~~VtsLafSPdG~~ 156 (1074)
+|.|..||..+|+.+....... ...... ..+++.++++++.++.|+.||..+|+.+..+... ..+..... .++..
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~-~~~~~~~~-~~~~~ 78 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGP-GIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLP-GPISGAPV-VDGGR 78 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSS-SCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEECS-SCGGSGEE-EETTE
T ss_pred CCEEEEEECCCCCEEEEEECCC-CCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeecc-ccccceee-ecccc
Confidence 6899999999999998886421 122222 3335777888889999999999999998888752 22222112 23556
Q ss_pred EEEEECCCeEEEEECCCCceEEEe-eecC---CCeEEEEEcCCCcEEEEEeCCCeEEEEECCCCcEEEeeCCCCCC----
Q 001462 157 VVSGGFDNVVKVWDLTAGKLLHDF-KFHE---GHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTG---- 228 (1074)
Q Consensus 157 LaSgs~DGsI~VWDl~tgk~v~~~-~~h~---g~ItsLafSPdg~lLaTGS~DGtI~IWDl~tg~~i~t~~~~~~~---- 228 (1074)
++++..++.|+.+|..+|+.+..+ .... .....+....++..++++..++.|..+|+.+|+.+.........
T Consensus 79 v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~ 158 (238)
T PF13360_consen 79 VYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSP 158 (238)
T ss_dssp EEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--
T ss_pred cccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcc
Confidence 777778889999999999999884 3221 11122222223778888888999999999999998777553322
Q ss_pred ------eEEEEEecCCCEEEEEECCcEEEEEecCCeeeeccccCCceeeEEEecCCCEEEEEECCCeEEEEEcCCCceee
Q 001462 229 ------VHAITFHPDGRTLFSGFDDNLKVYSWEPVICHDSVDMGWSTLGDLCINDGKLLGCSFYRNSVGIWVADVSHVEP 302 (1074)
Q Consensus 229 ------ItsIafSPDG~~LasGsd~~I~Vwd~~s~~~~~~l~~~~s~~~~l~spDGklLAsgs~DGsV~IWDld~~~l~~ 302 (1074)
+..-.+..++..+++..++.+..+|..++....... ..........++..|++++.++.|.+||+.+++..+
T Consensus 159 ~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~d~~tg~~~w~~~--~~~~~~~~~~~~~~l~~~~~~~~l~~~d~~tG~~~W 236 (238)
T PF13360_consen 159 ISSFSDINGSPVISDGRVYVSSGDGRVVAVDLATGEKLWSKP--ISGIYSLPSVDGGTLYVTSSDGRLYALDLKTGKVVW 236 (238)
T ss_dssp EEEETTEEEEEECCTTEEEEECCTSSEEEEETTTTEEEEEEC--SS-ECECEECCCTEEEEEETTTEEEEEETTTTEEEE
T ss_pred eeeecccccceEEECCEEEEEcCCCeEEEEECCCCCEEEEec--CCCccCCceeeCCEEEEEeCCCEEEEEECCCCCEEe
Confidence 122223334544444445543344888877443222 222333345677888888799999999999887765
|
... |
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=8.2e-07 Score=104.99 Aligned_cols=209 Identities=9% Similarity=-0.009 Sum_probs=134.8
Q ss_pred eEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCE-EEEEEcC---CeEEEEEcCCCeeEEEEeCCCCCeEEEEEcCCCCE
Q 001462 39 KVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVL-VLAGAST---GVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEF 114 (1074)
Q Consensus 39 tV~IWDl~t~k~l~sl~~hs~~ItsLafSpdg~~-LatGs~D---G~I~VWDl~tgk~i~tl~~h~~~VtsLafSPdg~~ 114 (1074)
.|.+-|..... ...+.... .+....|+|+|+. ++..+.+ ..|+++|+.+++...... ..+......|+|||+.
T Consensus 170 ~l~~~d~dg~~-~~~~~~~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~~ 246 (419)
T PRK04043 170 NIVLADYTLTY-QKVIVKGG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGSK 246 (419)
T ss_pred eEEEECCCCCc-eeEEccCC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCCE
Confidence 45554553333 33333233 7788999999985 5554443 579999998887654443 5566677889999987
Q ss_pred EEEEEC---CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECC-C--eEEEEECCCCceEEEeeecCCCeE
Q 001462 115 FASGCM---DTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFD-N--VVKVWDLTAGKLLHDFKFHEGHIR 188 (1074)
Q Consensus 115 LaSgS~---DGsI~IWDi~tg~~v~~l~~h~~~VtsLafSPdG~~LaSgs~D-G--sI~VWDl~tgk~v~~~~~h~g~It 188 (1074)
++.... +..|+++|+..+.. ..+..+........|+|||+.|+..+.. | .|+++|+.+++....... +. .
T Consensus 247 la~~~~~~g~~~Iy~~dl~~g~~-~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~--g~-~ 322 (419)
T PRK04043 247 LLLTMAPKGQPDIYLYDTNTKTL-TQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH--GK-N 322 (419)
T ss_pred EEEEEccCCCcEEEEEECCCCcE-EEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC--CC-c
Confidence 765532 35799999877764 3344333334456899999988776632 2 788999988776433321 11 1
Q ss_pred EEEEcCCCcEEEEEeCC---------CeEEEEECCCCcEEEeeCCCCCCeEEEEEecCCCEEEEEEC--Cc--EEEEEec
Q 001462 189 SIDFHPLEFLLATGSAD---------RTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGFD--DN--LKVYSWE 255 (1074)
Q Consensus 189 sLafSPdg~lLaTGS~D---------GtI~IWDl~tg~~i~t~~~~~~~ItsIafSPDG~~LasGsd--~~--I~Vwd~~ 255 (1074)
...|+|+|+.|+..+.. ..|.+.|+.++.... +... .......|+|||+.|+.... +. +.+++++
T Consensus 323 ~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~-LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~ 400 (419)
T PRK04043 323 NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRR-LTAN-GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLN 400 (419)
T ss_pred CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEE-CCCC-CCcCCeEECCCCCEEEEEEccCCcEEEEEEecC
Confidence 24899999988877653 368888998876533 3222 23346889999998887532 22 4455554
Q ss_pred C
Q 001462 256 P 256 (1074)
Q Consensus 256 s 256 (1074)
.
T Consensus 401 g 401 (419)
T PRK04043 401 Y 401 (419)
T ss_pred C
Confidence 3
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.93 E-value=4.4e-09 Score=120.62 Aligned_cols=280 Identities=15% Similarity=0.251 Sum_probs=183.0
Q ss_pred eEEEEecCCCCEEEEEEecCCCcEEEEEECCCeEEEEECC-------CCceEEEeeCCCCCeEEEEEcCCCCEEEEEEcC
Q 001462 7 KLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIG-------KPTALMSLCGLSSPVDSVAFDSAEVLVLAGAST 79 (1074)
Q Consensus 7 ~v~~L~gHs~~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~-------t~k~l~sl~~hs~~ItsLafSpdg~~LatGs~D 79 (1074)
.+..|.||...|..++--.+. +-+++++.|.+|++|.+. +..+-.++..|..+|..+.|-.+-++++++ |
T Consensus 727 rL~nf~GH~~~iRai~AidNE-NSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D 803 (1034)
T KOG4190|consen 727 RLCNFTGHQEKIRAIAAIDNE-NSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--D 803 (1034)
T ss_pred eeecccCcHHHhHHHHhcccc-cceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--c
Confidence 456789999999998765544 578999999999999883 234567788999999999999888877764 7
Q ss_pred CeEEEEEcCCCeeEEEEeC--CCCCeEEEEEcCC--CCEEEEE-ECCCeEEEEECCCCeEEEEEe-----CCCCCeEEEE
Q 001462 80 GVIKLWDLEESKMVRTLTG--HKSNCTAVEFHPF--GEFFASG-CMDTNLKIWDIRKKGCIHTYK-----GHTRGINTIR 149 (1074)
Q Consensus 80 G~I~VWDl~tgk~i~tl~~--h~~~VtsLafSPd--g~~LaSg-S~DGsI~IWDi~tg~~v~~l~-----~h~~~VtsLa 149 (1074)
|.|.+||.--|+++..+.. ..+.+..+...++ ...++.| +...+|+++|.+.++....++ +...-+.+++
T Consensus 804 ~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~ia 883 (1034)
T KOG4190|consen 804 GGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIA 883 (1034)
T ss_pred CcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEE
Confidence 8899999877766553321 1222333333333 3344444 668899999999887666654 3445689999
Q ss_pred EcCCCCEEEEEECCCeEEEEECCCCceEEEeeecCCCeEEEEEcCCCcEEEEEeCCCeEEE-EECCCCcEEEeeCCCCCC
Q 001462 150 FTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKF-WDLETFELIGSTRPEVTG 228 (1074)
Q Consensus 150 fSPdG~~LaSgs~DGsI~VWDl~tgk~v~~~~~h~g~ItsLafSPdg~lLaTGS~DGtI~I-WDl~tg~~i~t~~~~~~~ 228 (1074)
..+.|++++++-.+|.|.+.|.++|+.+..+.........++ .|....|+....|.++.+ |..-.+.......+...+
T Consensus 884 Va~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~saldHslaVnWhaldgimh~q~kpppep 962 (1034)
T KOG4190|consen 884 VADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSALDHSLAVNWHALDGIMHLQDKPPPEP 962 (1034)
T ss_pred eccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhcccceeEeeehhcCCeeeeccCCCCcc
Confidence 999999999999999999999999999888875554444444 355566777777888888 877666555554443332
Q ss_pred eEEEEEecCCCEEEEEECCc-EEEEEecC-------CeeeeccccCCceeeEEEecCCCEEEEEECCCeEEE
Q 001462 229 VHAITFHPDGRTLFSGFDDN-LKVYSWEP-------VICHDSVDMGWSTLGDLCINDGKLLGCSFYRNSVGI 292 (1074)
Q Consensus 229 ItsIafSPDG~~LasGsd~~-I~Vwd~~s-------~~~~~~l~~~~s~~~~l~spDGklLAsgs~DGsV~I 292 (1074)
..-+ -.-|..|++...|+ +.||--.. ......-............|-+..+..|...|.|.+
T Consensus 963 ahfl--qsvgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPLN~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 963 AHFL--QSVGPSLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPLNCAFLAGNEHGAIAL 1032 (1034)
T ss_pred hhhh--hccCceeEEeccCcEEEEEecchhhhhhhhhccccccccCCccceeeeccccchhhccCCCCceee
Confidence 2111 11244455544443 44443110 000111111222333334455555666777777654
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=98.93 E-value=2.3e-06 Score=109.70 Aligned_cols=276 Identities=16% Similarity=0.173 Sum_probs=179.8
Q ss_pred CCEEEEEEecCCCcEEEEEECCC---eEEEEECCCCc---eEEEee-----CCCCCeEEEEEcCCCCEEEEEEcCCeEEE
Q 001462 16 ANVNCISIGKKACRFLITGGDDQ---KVNLWAIGKPT---ALMSLC-----GLSSPVDSVAFDSAEVLVLAGASTGVIKL 84 (1074)
Q Consensus 16 ~~Vt~IafSPdg~~lLaTGs~DG---tV~IWDl~t~k---~l~sl~-----~hs~~ItsLafSpdg~~LatGs~DG~I~V 84 (1074)
..+...+|......++++.+... .|.+....... .+..+. .....|.++.|.++...++++..+|.|.+
T Consensus 22 ~~~~~~~~d~~sd~i~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~~~~~~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~ 101 (928)
T PF04762_consen 22 LPITATAFDSDSDSIYFVLGPNEIDYVIELDRFSQDGSVEVLASWDAPLPDDPNDKIVSFQYLADSESLCIALASGDIIL 101 (928)
T ss_pred cccceEEEecCCCeEEEEECCCCcceEEEEEeeccCCceeEEEeccccCCcCCCCcEEEEEeccCCCcEEEEECCceEEE
Confidence 35777788777644444443322 24444332222 233332 23467999999999999999999999999
Q ss_pred E----EcCCCeeEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEE------------------------E
Q 001462 85 W----DLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCI------------------------H 136 (1074)
Q Consensus 85 W----Dl~tgk~i~tl~~h~~~VtsLafSPdg~~LaSgS~DGsI~IWDi~tg~~v------------------------~ 136 (1074)
+ +..... +.....-...|.+++|+||+..|+..+.+|+|.+.+- +...+ .
T Consensus 102 ~~~~~~~~~~~-~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~-~fd~i~E~~l~~~~~~~~~~VsVGWGkKeT 179 (928)
T PF04762_consen 102 VREDPDPDEDE-IEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTR-DFDPISEVPLDSDDFGESKHVSVGWGKKET 179 (928)
T ss_pred EEccCCCCCce-eEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEec-cceEEEEeecCccccCCCceeeeccCcccC
Confidence 9 544332 2223334678999999999999999999999888752 11111 1
Q ss_pred EEeC------------------------CCCCeEEEEEcCCCCEEEEEEC---C---CeEEEEECCCCceEEEeeecCCC
Q 001462 137 TYKG------------------------HTRGINTIRFTPDGRWVVSGGF---D---NVVKVWDLTAGKLLHDFKFHEGH 186 (1074)
Q Consensus 137 ~l~~------------------------h~~~VtsLafSPdG~~LaSgs~---D---GsI~VWDl~tgk~v~~~~~h~g~ 186 (1074)
.|.| ....-..|+|-.||.|||+.+. . ..|+||+- .|.+....+.-.+-
T Consensus 180 QF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~R-eG~L~stSE~v~gL 258 (928)
T PF04762_consen 180 QFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSR-EGELQSTSEPVDGL 258 (928)
T ss_pred ccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECC-CceEEeccccCCCc
Confidence 1100 1224467889999999998774 3 47999995 47776666555555
Q ss_pred eEEEEEcCCCcEEEEEeC---CCeEEEEECCCCcEEEee----CCCCCCeEEEEEecCCCEEEEEECCcEEEEEecCCee
Q 001462 187 IRSIDFHPLEFLLATGSA---DRTVKFWDLETFELIGST----RPEVTGVHAITFHPDGRTLFSGFDDNLKVYSWEPVIC 259 (1074)
Q Consensus 187 ItsLafSPdg~lLaTGS~---DGtI~IWDl~tg~~i~t~----~~~~~~ItsIafSPDG~~LasGsd~~I~Vwd~~s~~~ 259 (1074)
-.+++|.|.|++||+... ...|.+|.-+ |-.-..| ......|..+.|++|+..|+....+.|.+|...+...
T Consensus 259 e~~l~WrPsG~lIA~~q~~~~~~~VvFfErN-GLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~vqLWt~~NYHW 337 (928)
T PF04762_consen 259 EGALSWRPSGNLIASSQRLPDRHDVVFFERN-GLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDRVQLWTRSNYHW 337 (928)
T ss_pred cCCccCCCCCCEEEEEEEcCCCcEEEEEecC-CcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCCceEEEeeCCEE
Confidence 678999999999998764 3457777644 3322222 2345679999999999999998888899998877543
Q ss_pred --eeccccC--CceeeEEEec-CCCEEEEEECCCeEEEEEc
Q 001462 260 --HDSVDMG--WSTLGDLCIN-DGKLLGCSFYRNSVGIWVA 295 (1074)
Q Consensus 260 --~~~l~~~--~s~~~~l~sp-DGklLAsgs~DGsV~IWDl 295 (1074)
...+... .......|.+ +...|.+...+|.+.+++.
T Consensus 338 YLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~ 378 (928)
T PF04762_consen 338 YLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDF 378 (928)
T ss_pred EEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEE
Confidence 2222211 1222244444 4455666666677766554
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.1e-07 Score=113.39 Aligned_cols=211 Identities=13% Similarity=0.102 Sum_probs=159.0
Q ss_pred CceEEEEecCCCCEEEEEEecCC-----------CcEEEEEECCCeEEEEECCCCceEEEeeCCCCCeEEEEEcCC---C
Q 001462 5 GYKLQEFVAHSANVNCISIGKKA-----------CRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSA---E 70 (1074)
Q Consensus 5 G~~v~~L~gHs~~Vt~IafSPdg-----------~~lLaTGs~DGtV~IWDl~t~k~l~sl~~hs~~ItsLafSpd---g 70 (1074)
-+.++.+.-|...|+.+.|.|-. .-+||++...|.|.+||+..+..+..+..|..++..++|-+. .
T Consensus 45 ~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~S 124 (1062)
T KOG1912|consen 45 LQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDS 124 (1062)
T ss_pred hhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcc
Confidence 35677888899999999998742 236788888999999999988888888889999999999763 3
Q ss_pred -CEEEEEEcCCeEEEEEcCCCeeEEEEeCCCCCeEEEEEcCC-CCEEEEEECCCeEEEEECCC-------CeEEEEEeCC
Q 001462 71 -VLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPF-GEFFASGCMDTNLKIWDIRK-------KGCIHTYKGH 141 (1074)
Q Consensus 71 -~~LatGs~DG~I~VWDl~tgk~i~tl~~h~~~VtsLafSPd-g~~LaSgS~DGsI~IWDi~t-------g~~v~~l~~h 141 (1074)
.+|++-.....|.+|+..+|+..+..........|+.+.|. .+.|..-+..|.+.+.+.-. ++..+.-..|
T Consensus 125 rd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~ 204 (1062)
T KOG1912|consen 125 RDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDH 204 (1062)
T ss_pred hheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCc
Confidence 35566566779999999999999988777777888999994 45666666788887776431 2223222222
Q ss_pred CC-------------------------CeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeeecCCCeEEEEEcCCC
Q 001462 142 TR-------------------------GINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLE 196 (1074)
Q Consensus 142 ~~-------------------------~VtsLafSPdG~~LaSgs~DGsI~VWDl~tgk~v~~~~~h~g~ItsLafSPdg 196 (1074)
.+ ....++|+|.-+.++.......|.++|++-...+.......+.+.-+.|-|++
T Consensus 205 Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vlP~~ 284 (1062)
T KOG1912|consen 205 SDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDP 284 (1062)
T ss_pred cchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCcceeEeccCC
Confidence 21 01245678866656666678889999999888888877667777778887764
Q ss_pred --cEEEEEeCCCeEEEEECCC
Q 001462 197 --FLLATGSADRTVKFWDLET 215 (1074)
Q Consensus 197 --~lLaTGS~DGtI~IWDl~t 215 (1074)
..|+++..||.+.+|--+.
T Consensus 285 ~rd~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 285 RRDALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred CcceEEEEecCCeEEEEEeec
Confidence 6899999999999996553
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=98.90 E-value=3e-06 Score=92.41 Aligned_cols=217 Identities=17% Similarity=0.159 Sum_probs=148.9
Q ss_pred EEEEecCCCcEEEEEECCCeEEEEECCCCceEEEeeCCCCCeEEEEEc-CCCCEEEEEEcCCeEEEEEcCCCeeEEEEeC
Q 001462 20 CISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFD-SAEVLVLAGASTGVIKLWDLEESKMVRTLTG 98 (1074)
Q Consensus 20 ~IafSPdg~~lLaTGs~DGtV~IWDl~t~k~l~sl~~hs~~ItsLafS-pdg~~LatGs~DG~I~VWDl~tgk~i~tl~~ 98 (1074)
++.|.+....++++.-..+.|+.|+..++.... +.... ...+++. +++ .|+++...+ +.++|+.+++.......
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~g-~l~v~~~~~-~~~~d~~~g~~~~~~~~ 78 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPDG-RLYVADSGG-IAVVDPDTGKVTVLADL 78 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTTS-EEEEEETTC-EEEEETTTTEEEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccCC-EEEEEEcCc-eEEEecCCCcEEEEeec
Confidence 678998444777777788999999997765543 22222 6777887 564 555555544 66669988865444432
Q ss_pred -----CCCCeEEEEEcCCCCEEEEEECC--------CeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEE-EECCC
Q 001462 99 -----HKSNCTAVEFHPFGEFFASGCMD--------TNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVS-GGFDN 164 (1074)
Q Consensus 99 -----h~~~VtsLafSPdg~~LaSgS~D--------GsI~IWDi~tg~~v~~l~~h~~~VtsLafSPdG~~LaS-gs~DG 164 (1074)
......++++.++|+++++.... |.|+.++.. ++...... .-.....|+|+|+++.|++ -+..+
T Consensus 79 ~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-~~~~pNGi~~s~dg~~lyv~ds~~~ 156 (246)
T PF08450_consen 79 PDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-GLGFPNGIAFSPDGKTLYVADSFNG 156 (246)
T ss_dssp ETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-EESSEEEEEEETTSSEEEEEETTTT
T ss_pred cCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec-CcccccceEECCcchheeecccccc
Confidence 23457899999999977766543 568888877 55444333 3455789999999997764 45678
Q ss_pred eEEEEECCCCc--e-----EEEeeecCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCCcEEEeeCCCCCCeEEEEEe-c
Q 001462 165 VVKVWDLTAGK--L-----LHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFH-P 236 (1074)
Q Consensus 165 sI~VWDl~tgk--~-----v~~~~~h~g~ItsLafSPdg~lLaTGS~DGtI~IWDl~tg~~i~t~~~~~~~ItsIafS-P 236 (1074)
.|..|++.... . ...+....+..-.+++..+|++.++....+.|.++|.. |+.+..+......+++++|. +
T Consensus 157 ~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fgg~ 235 (246)
T PF08450_consen 157 RIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAFGGP 235 (246)
T ss_dssp EEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEEEST
T ss_pred eeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEEECC
Confidence 89999985322 1 11222222347889999999988888888999999988 88888777666689999994 6
Q ss_pred CCCEEEEE
Q 001462 237 DGRTLFSG 244 (1074)
Q Consensus 237 DG~~LasG 244 (1074)
+.+.|++.
T Consensus 236 ~~~~L~vT 243 (246)
T PF08450_consen 236 DGKTLYVT 243 (246)
T ss_dssp TSSEEEEE
T ss_pred CCCEEEEE
Confidence 66666654
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=7.4e-07 Score=104.16 Aligned_cols=255 Identities=13% Similarity=0.027 Sum_probs=160.1
Q ss_pred EEEEEECCCeEEEEECCCCceEEEeeCCCCCeEE-EEEcCCCCEEEEEEcCCeEEEEEcCCCeeEEEEeCCCCCe-----
Q 001462 30 FLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDS-VAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNC----- 103 (1074)
Q Consensus 30 lLaTGs~DGtV~IWDl~t~k~l~sl~~hs~~Its-LafSpdg~~LatGs~DG~I~VWDl~tgk~i~tl~~h~~~V----- 103 (1074)
.++.++.+|.++.+|..+|+.+....... .+.+ ... .+..++++..+|.|..+|..+|+.+..+.......
T Consensus 122 ~v~v~~~~g~l~ald~~tG~~~W~~~~~~-~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~ 198 (394)
T PRK11138 122 KVYIGSEKGQVYALNAEDGEVAWQTKVAG-EALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGE 198 (394)
T ss_pred EEEEEcCCCEEEEEECCCCCCcccccCCC-ceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCC
Confidence 56778889999999999999888765432 2221 112 24467778889999999999999988876331111
Q ss_pred EEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeCCCC-------CeEEEEEcC--CCCEEEEEECCCeEEEEECCCC
Q 001462 104 TAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTR-------GINTIRFTP--DGRWVVSGGFDNVVKVWDLTAG 174 (1074)
Q Consensus 104 tsLafSPdg~~LaSgS~DGsI~IWDi~tg~~v~~l~~h~~-------~VtsLafSP--dG~~LaSgs~DGsI~VWDl~tg 174 (1074)
..... .+..++.++.+|.++.+|..+|+.+........ ....+..+| .+..+++++.+|.+..+|..+|
T Consensus 199 ~sP~v--~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG 276 (394)
T PRK11138 199 SAPAT--AFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSG 276 (394)
T ss_pred CCCEE--ECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCC
Confidence 11111 134567777899999999999987765532110 011111222 3456777788999999999999
Q ss_pred ceEEEeeecCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCCcEEEeeCCCCC-CeEEEEEecCCCEEEEEECCcEEEEE
Q 001462 175 KLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVT-GVHAITFHPDGRTLFSGFDDNLKVYS 253 (1074)
Q Consensus 175 k~v~~~~~h~g~ItsLafSPdg~lLaTGS~DGtI~IWDl~tg~~i~t~~~~~~-~ItsIafSPDG~~LasGsd~~I~Vwd 253 (1074)
+.+..... +....+.. .+..|+.++.+|.+..+|..+++.+........ ...+..+ -+|.+++...++.+.++|
T Consensus 277 ~~~W~~~~--~~~~~~~~--~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v-~~g~l~v~~~~G~l~~ld 351 (394)
T PRK11138 277 QIVWKREY--GSVNDFAV--DGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL-YNGYLVVGDSEGYLHWIN 351 (394)
T ss_pred CEEEeecC--CCccCcEE--ECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE-ECCEEEEEeCCCEEEEEE
Confidence 98876542 11222222 466777888899999999999988765432211 1222222 245544445667788888
Q ss_pred ecCCeeeeccccCCc-eeeEEEecCCCEEEEEECCCeEEEEEc
Q 001462 254 WEPVICHDSVDMGWS-TLGDLCINDGKLLGCSFYRNSVGIWVA 295 (1074)
Q Consensus 254 ~~s~~~~~~l~~~~s-~~~~l~spDGklLAsgs~DGsV~IWDl 295 (1074)
..++........... ....-...+ ..|+.++.||.|..++.
T Consensus 352 ~~tG~~~~~~~~~~~~~~s~P~~~~-~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 352 REDGRFVAQQKVDSSGFLSEPVVAD-DKLLIQARDGTVYAITR 393 (394)
T ss_pred CCCCCEEEEEEcCCCcceeCCEEEC-CEEEEEeCCceEEEEeC
Confidence 888776655544222 111112234 46777789998887753
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.1e-06 Score=114.36 Aligned_cols=236 Identities=12% Similarity=0.120 Sum_probs=156.6
Q ss_pred EEEEEcCC-CCEEEEEEcCCeEEEEEcCCCeeEEEEeC-C-------------CCCeEEEEEcCCCCEEEEEEC-CCeEE
Q 001462 62 DSVAFDSA-EVLVLAGASTGVIKLWDLEESKMVRTLTG-H-------------KSNCTAVEFHPFGEFFASGCM-DTNLK 125 (1074)
Q Consensus 62 tsLafSpd-g~~LatGs~DG~I~VWDl~tgk~i~tl~~-h-------------~~~VtsLafSPdg~~LaSgS~-DGsI~ 125 (1074)
..+++++. +.++++-..++.|.+||.. +..+..+.. . -..-..+++.++++.|+++.. .+.|+
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir 649 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR 649 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence 46788874 5666666778899999975 444443332 1 113478899998887777654 46799
Q ss_pred EEECCCCeEEEEEeCC-----------------CCCeEEEEEcC-CCCEEEEEECCCeEEEEECCCCceEEEeee-----
Q 001462 126 IWDIRKKGCIHTYKGH-----------------TRGINTIRFTP-DGRWVVSGGFDNVVKVWDLTAGKLLHDFKF----- 182 (1074)
Q Consensus 126 IWDi~tg~~v~~l~~h-----------------~~~VtsLafSP-dG~~LaSgs~DGsI~VWDl~tgk~v~~~~~----- 182 (1074)
++|+.++. +..+.+. -.....++|+| ++.++++...++.|++||..++... .+.+
T Consensus 650 ~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~ 727 (1057)
T PLN02919 650 EIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYER 727 (1057)
T ss_pred EEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCccc
Confidence 99987654 3333210 11346899999 5566667677899999998776543 2211
Q ss_pred ----------cCCCeEEEEEcCCCcEEE-EEeCCCeEEEEECCCCcEEEeeC-------------CC--------CCCeE
Q 001462 183 ----------HEGHIRSIDFHPLEFLLA-TGSADRTVKFWDLETFELIGSTR-------------PE--------VTGVH 230 (1074)
Q Consensus 183 ----------h~g~ItsLafSPdg~lLa-TGS~DGtI~IWDl~tg~~i~t~~-------------~~--------~~~It 230 (1074)
.-.....|+|+|++..|+ +-+.++.|++||+.++....... .. .....
T Consensus 728 ~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~ 807 (1057)
T PLN02919 728 NLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPL 807 (1057)
T ss_pred cCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCc
Confidence 012356799999988554 44567899999998765321110 00 11246
Q ss_pred EEEEecCCCEEEEE-ECCcEEEEEecCCeeeeccccC--------------CceeeEEEecCCCEEEEEECCCeEEEEEc
Q 001462 231 AITFHPDGRTLFSG-FDDNLKVYSWEPVICHDSVDMG--------------WSTLGDLCINDGKLLGCSFYRNSVGIWVA 295 (1074)
Q Consensus 231 sIafSPDG~~LasG-sd~~I~Vwd~~s~~~~~~l~~~--------------~s~~~~l~spDGklLAsgs~DGsV~IWDl 295 (1074)
.++|+++|.++++. .++.|++||.+..........+ ..+....+.++|+++++-+.++.|++||+
T Consensus 808 Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~ 887 (1057)
T PLN02919 808 GVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDL 887 (1057)
T ss_pred eeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEEC
Confidence 89999999877664 4567999998876554322111 24556677789999888889999999999
Q ss_pred CCCce
Q 001462 296 DVSHV 300 (1074)
Q Consensus 296 d~~~l 300 (1074)
+.+..
T Consensus 888 ~~~~~ 892 (1057)
T PLN02919 888 NKGEA 892 (1057)
T ss_pred CCCcc
Confidence 77654
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=2.3e-06 Score=99.96 Aligned_cols=270 Identities=10% Similarity=-0.005 Sum_probs=165.1
Q ss_pred cEEEEEECCCeEEEEECCCCceEEEeeCCCC-CeE------EEEEcC--CCCEEEEEEcCCeEEEEEcCCCeeEEEEeCC
Q 001462 29 RFLITGGDDQKVNLWAIGKPTALMSLCGLSS-PVD------SVAFDS--AEVLVLAGASTGVIKLWDLEESKMVRTLTGH 99 (1074)
Q Consensus 29 ~lLaTGs~DGtV~IWDl~t~k~l~sl~~hs~-~It------sLafSp--dg~~LatGs~DG~I~VWDl~tgk~i~tl~~h 99 (1074)
..+++++.+|.|.-+|..+|+.+........ .+. .+.-.| .+..+++++.+|.+..+|.++|+.+......
T Consensus 70 ~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~ 149 (394)
T PRK11138 70 NKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQTKVA 149 (394)
T ss_pred CEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCcccccCC
Confidence 3677788889999999999998877643220 000 000011 3556778888999999999999998877643
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeCCCCCeEE-EEEcC--CCCEEEEEECCCeEEEEECCCCce
Q 001462 100 KSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINT-IRFTP--DGRWVVSGGFDNVVKVWDLTAGKL 176 (1074)
Q Consensus 100 ~~~VtsLafSPdg~~LaSgS~DGsI~IWDi~tg~~v~~l~~h~~~Vts-LafSP--dG~~LaSgs~DGsI~VWDl~tgk~ 176 (1074)
.......... +..++++..+|.|+.+|..+|+.+..+......+.. ..-+| .+..++.++.+|.+..+|..+|+.
T Consensus 150 ~~~~ssP~v~--~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~ 227 (394)
T PRK11138 150 GEALSRPVVS--DGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDNGRVSAVLMEQGQL 227 (394)
T ss_pred CceecCCEEE--CCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCCCEEEEEEccCChh
Confidence 3211112222 456777788999999999999998887643111100 00112 233577778899999999999988
Q ss_pred EEEeeecCC-------CeEEEEEcC--CCcEEEEEeCCCeEEEEECCCCcEEEeeCCCCCCeEEEEEecCCCEEEEEECC
Q 001462 177 LHDFKFHEG-------HIRSIDFHP--LEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGFDD 247 (1074)
Q Consensus 177 v~~~~~h~g-------~ItsLafSP--dg~lLaTGS~DGtI~IWDl~tg~~i~t~~~~~~~ItsIafSPDG~~LasGsd~ 247 (1074)
+........ ....+..+| .+..+++++.+|.+..+|..+|+.+...... ....+.. .++..++...++
T Consensus 228 ~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~--~~~~~~~-~~~~vy~~~~~g 304 (394)
T PRK11138 228 IWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREYG--SVNDFAV-DGGRIYLVDQND 304 (394)
T ss_pred hheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecCC--CccCcEE-ECCEEEEEcCCC
Confidence 776542110 011111223 2556777788999999999999887665322 1122222 234444445567
Q ss_pred cEEEEEecCCeeeecccc-CCceeeEEEecCCCEEEEEECCCeEEEEEcCCCceeeee
Q 001462 248 NLKVYSWEPVICHDSVDM-GWSTLGDLCINDGKLLGCSFYRNSVGIWVADVSHVEPYG 304 (1074)
Q Consensus 248 ~I~Vwd~~s~~~~~~l~~-~~s~~~~l~spDGklLAsgs~DGsV~IWDld~~~l~~~~ 304 (1074)
.+..++..++...-.... .......... .+.+|+.++.+|.|.+.|...+++....
T Consensus 305 ~l~ald~~tG~~~W~~~~~~~~~~~sp~v-~~g~l~v~~~~G~l~~ld~~tG~~~~~~ 361 (394)
T PRK11138 305 RVYALDTRGGVELWSQSDLLHRLLTAPVL-YNGYLVVGDSEGYLHWINREDGRFVAQQ 361 (394)
T ss_pred eEEEEECCCCcEEEcccccCCCcccCCEE-ECCEEEEEeCCCEEEEEECCCCCEEEEE
Confidence 777777776654432221 1111111111 2456677789999999999877765543
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.87 E-value=9.5e-09 Score=117.99 Aligned_cols=270 Identities=17% Similarity=0.191 Sum_probs=178.9
Q ss_pred EEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCC-------CeeEEEEeCCCCCeEEEEEcCCCCEEEEEECCCe
Q 001462 51 LMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEE-------SKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTN 123 (1074)
Q Consensus 51 l~sl~~hs~~ItsLafSpdg~~LatGs~DG~I~VWDl~t-------gk~i~tl~~h~~~VtsLafSPdg~~LaSgS~DGs 123 (1074)
+..+.+|...|..++--.+.+.+++++.|.+|++|.++. ..+..++..|..+|.++.|..+.++++++ ||-
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~g 805 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGG 805 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCc
Confidence 455678888888887777888899999999999999863 23567788899999999999999888875 788
Q ss_pred EEEEECCCCeEEEEEeC--CCCCeEEEEEcC--CCCEEEEE-ECCCeEEEEECCCCceEEEeeec-----CCCeEEEEEc
Q 001462 124 LKIWDIRKKGCIHTYKG--HTRGINTIRFTP--DGRWVVSG-GFDNVVKVWDLTAGKLLHDFKFH-----EGHIRSIDFH 193 (1074)
Q Consensus 124 I~IWDi~tg~~v~~l~~--h~~~VtsLafSP--dG~~LaSg-s~DGsI~VWDl~tgk~v~~~~~h-----~g~ItsLafS 193 (1074)
|.+||.--+..+..+.. ..+.+..+...+ +...+++| +...+|+++|.+.+..+.+++.. .+-+.+++..
T Consensus 806 iHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa 885 (1034)
T KOG4190|consen 806 IHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVA 885 (1034)
T ss_pred ceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEec
Confidence 99999877776553321 112233333333 33444444 56789999999999887777643 3558899999
Q ss_pred CCCcEEEEEeCCCeEEEEECCCCcEEEeeCCCCCCeEEEEEecCCCEEEE-EECCcEEE-EEecCCeeeeccccCCceee
Q 001462 194 PLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFS-GFDDNLKV-YSWEPVICHDSVDMGWSTLG 271 (1074)
Q Consensus 194 Pdg~lLaTGS~DGtI~IWDl~tg~~i~t~~~~~~~ItsIafSPDG~~Las-Gsd~~I~V-wd~~s~~~~~~l~~~~s~~~ 271 (1074)
+.|++++.+-.+|.|.+.|.++|+.+..+.+.......++- |..+.|+. ..+..+.| |..-.+..+-.....-.+..
T Consensus 886 ~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqlaa-psdq~L~~saldHslaVnWhaldgimh~q~kpppepah 964 (1034)
T KOG4190|consen 886 DKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLAA-PSDQALAQSALDHSLAVNWHALDGIMHLQDKPPPEPAH 964 (1034)
T ss_pred cCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhcC-chhHHHHhhcccceeEeeehhcCCeeeeccCCCCcchh
Confidence 99999999999999999999999998887776555544443 33444554 45666666 65544443332222111111
Q ss_pred EEEecCCCEEEEEECCCeEEEEEcCCCceee---eecCCCCCCCCceeEEEEcCCCC
Q 001462 272 DLCINDGKLLGCSFYRNSVGIWVADVSHVEP---YGVGAPEPDQSICTEVKFNPPGS 325 (1074)
Q Consensus 272 ~l~spDGklLAsgs~DGsV~IWDld~~~l~~---~~~~~~~~~~~~ItsVaFSPDGs 325 (1074)
. .-.-|.-|++...++.+.+|.- ..+... .....++...+..+.++--|-..
T Consensus 965 f-lqsvgpSLV~a~~Gn~lgVYad-~a~~ha~stitKiR~d~f~G~lTala~LPLN~ 1019 (1034)
T KOG4190|consen 965 F-LQSVGPSLVTAQNGNILGVYAD-SAELHAESTITKIRPDEFPGTLTALAPLPLNC 1019 (1034)
T ss_pred h-hhccCceeEEeccCcEEEEEec-chhhhhhhhhccccccccCCccceeeeccccc
Confidence 1 1123556777777777888842 122111 11122233455566666655433
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=98.85 E-value=2.1e-06 Score=91.93 Aligned_cols=216 Identities=18% Similarity=0.097 Sum_probs=144.4
Q ss_pred CCeEEEEECCCCceEEEeeCCCCCeEEEE--EcCCCCEEEEEEcCCeEEEEEcCCCeeEEEEeCCCCCeEEEEEcCCCCE
Q 001462 37 DQKVNLWAIGKPTALMSLCGLSSPVDSVA--FDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEF 114 (1074)
Q Consensus 37 DGtV~IWDl~t~k~l~sl~~hs~~ItsLa--fSpdg~~LatGs~DG~I~VWDl~tgk~i~tl~~h~~~VtsLafSPdg~~ 114 (1074)
+|.|..||..+++.+....... .+.... ..+++..+++++.++.|..||..+|+.+..+.. ...+.... ...+..
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~-~~~~~~ 78 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGP-GIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAP-VVDGGR 78 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSS-SCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGE-EEETTE
T ss_pred CCEEEEEECCCCCEEEEEECCC-CCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeec-ccccccee-eecccc
Confidence 6899999999999988876411 122222 233566788888999999999999999988875 33322222 223556
Q ss_pred EEEEECCCeEEEEECCCCeEEEEE-eCCC---CCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeeecCCC----
Q 001462 115 FASGCMDTNLKIWDIRKKGCIHTY-KGHT---RGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGH---- 186 (1074)
Q Consensus 115 LaSgS~DGsI~IWDi~tg~~v~~l-~~h~---~~VtsLafSPdG~~LaSgs~DGsI~VWDl~tgk~v~~~~~h~g~---- 186 (1074)
+++++.++.|+.+|..+|+.+... .... ..........++..++++..++.|..+|..+|+.+..+......
T Consensus 79 v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~ 158 (238)
T PF13360_consen 79 VYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSP 158 (238)
T ss_dssp EEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--
T ss_pred cccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcc
Confidence 677778899999999999998884 3221 11222233334778888888999999999999999888764422
Q ss_pred ------e-EEEEEcCCCcEEEEEeCCCeEEEEECCCCcEEEeeCCCCCCeEEEEEecCCCEEEEEE-CCcEEEEEecCCe
Q 001462 187 ------I-RSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGF-DDNLKVYSWEPVI 258 (1074)
Q Consensus 187 ------I-tsLafSPdg~lLaTGS~DGtI~IWDl~tg~~i~t~~~~~~~ItsIafSPDG~~LasGs-d~~I~Vwd~~s~~ 258 (1074)
+ ..+.+. ++ .++.++.++.+..+|+.+++.+.... ...+..+ ...++..|+++. ++.+.+||..+++
T Consensus 159 ~~~~~~~~~~~~~~-~~-~v~~~~~~g~~~~~d~~tg~~~w~~~--~~~~~~~-~~~~~~~l~~~~~~~~l~~~d~~tG~ 233 (238)
T PF13360_consen 159 ISSFSDINGSPVIS-DG-RVYVSSGDGRVVAVDLATGEKLWSKP--ISGIYSL-PSVDGGTLYVTSSDGRLYALDLKTGK 233 (238)
T ss_dssp EEEETTEEEEEECC-TT-EEEEECCTSSEEEEETTTTEEEEEEC--SS-ECEC-EECCCTEEEEEETTTEEEEEETTTTE
T ss_pred eeeecccccceEEE-CC-EEEEEcCCCeEEEEECCCCCEEEEec--CCCccCC-ceeeCCEEEEEeCCCEEEEEECCCCC
Confidence 1 223333 44 67677777754444999998765433 2323332 446667777765 7889999998876
Q ss_pred ee
Q 001462 259 CH 260 (1074)
Q Consensus 259 ~~ 260 (1074)
..
T Consensus 234 ~~ 235 (238)
T PF13360_consen 234 VV 235 (238)
T ss_dssp EE
T ss_pred EE
Confidence 54
|
... |
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.5e-06 Score=97.75 Aligned_cols=251 Identities=16% Similarity=0.177 Sum_probs=172.7
Q ss_pred cEEEEEECCCeEEEEECC-CCceEEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeeEEEEeC---C-----
Q 001462 29 RFLITGGDDQKVNLWAIG-KPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTG---H----- 99 (1074)
Q Consensus 29 ~lLaTGs~DGtV~IWDl~-t~k~l~sl~~hs~~ItsLafSpdg~~LatGs~DG~I~VWDl~tgk~i~tl~~---h----- 99 (1074)
++.+....+|.-.||... +|+.+.....+. .-++=..+.||+.++.. ..|.|.+||..+..+.+.--+ .
T Consensus 237 RvYFlsD~eG~GnlYSvdldGkDlrrHTnFt-dYY~R~~nsDGkrIvFq-~~GdIylydP~td~lekldI~lpl~rk~k~ 314 (668)
T COG4946 237 RVYFLSDHEGVGNLYSVDLDGKDLRRHTNFT-DYYPRNANSDGKRIVFQ-NAGDIYLYDPETDSLEKLDIGLPLDRKKKQ 314 (668)
T ss_pred eEEEEecccCccceEEeccCCchhhhcCCch-hccccccCCCCcEEEEe-cCCcEEEeCCCcCcceeeecCCcccccccc
Confidence 344445556665666442 233222211111 12333445688887774 568899999876543222111 0
Q ss_pred C---CCeEEEE-EcC-CCCEEEEEECCCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCC-eEEEEECCC
Q 001462 100 K---SNCTAVE-FHP-FGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDN-VVKVWDLTA 173 (1074)
Q Consensus 100 ~---~~VtsLa-fSP-dg~~LaSgS~DGsI~IWDi~tg~~v~~l~~h~~~VtsLafSPdG~~LaSgs~DG-sI~VWDl~t 173 (1074)
. .+..-+. |++ +|++++..+ .|...|.+...+-.++. ++...|.-..+.-+++-++.|..|| .|-|||..+
T Consensus 315 ~k~~~pskyledfa~~~Gd~ia~VS-RGkaFi~~~~~~~~iqv--~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~ 391 (668)
T COG4946 315 PKFVNPSKYLEDFAVVNGDYIALVS-RGKAFIMRPWDGYSIQV--GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDG 391 (668)
T ss_pred ccccCHHHhhhhhccCCCcEEEEEe-cCcEEEECCCCCeeEEc--CCCCceEEEEEccCCcceEEeccCCceEEEEecCC
Confidence 0 0111111 332 588888876 57788887655544433 3566688888888888899999999 899999987
Q ss_pred CceEEEeeecCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCCcEEEeeCCCCCCeEEEEEecCCCEEEEEEC-----Cc
Q 001462 174 GKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGFD-----DN 248 (1074)
Q Consensus 174 gk~v~~~~~h~g~ItsLafSPdg~lLaTGS~DGtI~IWDl~tg~~i~t~~~~~~~ItsIafSPDG~~LasGsd-----~~ 248 (1074)
++.. .+...-+.|.++..+++|++++++.....|.++|+.++.....-+...+-|+.+.|+|++++++-+.- ..
T Consensus 392 ~e~k-r~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~ 470 (668)
T COG4946 392 GEVK-RIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQS 470 (668)
T ss_pred ceEE-EeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeee
Confidence 7644 45556788999999999999999998899999999999887666667788999999999999998743 34
Q ss_pred EEEEEecCCeeeeccccCCceeeEEEecCCCEEEEEE
Q 001462 249 LKVYSWEPVICHDSVDMGWSTLGDLCINDGKLLGCSF 285 (1074)
Q Consensus 249 I~Vwd~~s~~~~~~l~~~~s~~~~l~spDGklLAsgs 285 (1074)
|++||....+...............+-+||++|..-+
T Consensus 471 Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 471 IKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred EEEEecCCCeEEEecCCcccccCcccCCCCcEEEEEe
Confidence 9999999988777655555556677778998876654
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.80 E-value=4.1e-07 Score=99.29 Aligned_cols=227 Identities=22% Similarity=0.251 Sum_probs=155.9
Q ss_pred CCEEEEEEec---CCCcEEEEEECCCeEEEEECCCCceEEEeeCCC------CCeEEEEEcCCCCEEEEEEcCCeEEEEE
Q 001462 16 ANVNCISIGK---KACRFLITGGDDQKVNLWAIGKPTALMSLCGLS------SPVDSVAFDSAEVLVLAGASTGVIKLWD 86 (1074)
Q Consensus 16 ~~Vt~IafSP---dg~~lLaTGs~DGtV~IWDl~t~k~l~sl~~hs------~~ItsLafSpdg~~LatGs~DG~I~VWD 86 (1074)
+.+..+.|.. +|.-.++-+..+|.|.+|..........+.+.. ....++.|++.+..++++-.+|.+.+-+
T Consensus 70 s~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~ 149 (339)
T KOG0280|consen 70 STEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVY 149 (339)
T ss_pred cccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEe
Confidence 4456666653 332256677788999999875555444444322 1245788999999999999999999776
Q ss_pred cCCCee--EEEEeCCCCCeEEEEEcCC-CCEEEEEECCCeEEEEECC-CCeEEEE-EeCCCCCeEEEEEcC-CCCEEEEE
Q 001462 87 LEESKM--VRTLTGHKSNCTAVEFHPF-GEFFASGCMDTNLKIWDIR-KKGCIHT-YKGHTRGINTIRFTP-DGRWVVSG 160 (1074)
Q Consensus 87 l~tgk~--i~tl~~h~~~VtsLafSPd-g~~LaSgS~DGsI~IWDi~-tg~~v~~-l~~h~~~VtsLafSP-dG~~LaSg 160 (1074)
.....+ ++.++.|..+++...|+.. .+.+++|+.||.+..||++ .++.+.. .+.|..+|.+|.-+| .+.++++|
T Consensus 150 ~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TG 229 (339)
T KOG0280|consen 150 ETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATG 229 (339)
T ss_pred cceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEe
Confidence 655544 3478899999999999764 4688999999999999998 4444443 556888999998887 67799999
Q ss_pred ECCCeEEEEECC-CCceEEEeeecCCCeEEEEEcCC--CcEEEEEeCCCeEEEEECCCC--c---EEEeeCCCCCCeEEE
Q 001462 161 GFDNVVKVWDLT-AGKLLHDFKFHEGHIRSIDFHPL--EFLLATGSADRTVKFWDLETF--E---LIGSTRPEVTGVHAI 232 (1074)
Q Consensus 161 s~DGsI~VWDl~-tgk~v~~~~~h~g~ItsLafSPd--g~lLaTGS~DGtI~IWDl~tg--~---~i~t~~~~~~~ItsI 232 (1074)
+.|-.|++||.+ .++++..-. -.|.|+.+.++|. +.+|+++-.+| .+|.+...+ + .......|.+-...-
T Consensus 230 sYDe~i~~~DtRnm~kPl~~~~-v~GGVWRi~~~p~~~~~lL~~CMh~G-~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~ 307 (339)
T KOG0280|consen 230 SYDECIRVLDTRNMGKPLFKAK-VGGGVWRIKHHPEIFHRLLAACMHNG-AKILDSSDKVLEFQIVLPSDKIHDSLCYGG 307 (339)
T ss_pred ccccceeeeehhcccCccccCc-cccceEEEEecchhhhHHHHHHHhcC-ceEEEecccccchheeeeccccccceeecc
Confidence 999999999998 466665544 3478999999994 33444444443 455555432 2 223334454444555
Q ss_pred EEecCCCEEEEE
Q 001462 233 TFHPDGRTLFSG 244 (1074)
Q Consensus 233 afSPDG~~LasG 244 (1074)
.|.....+|+++
T Consensus 308 DWd~~~~~lATC 319 (339)
T KOG0280|consen 308 DWDSKDSFLATC 319 (339)
T ss_pred ccccccceeeee
Confidence 554444556663
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=98.79 E-value=7.9e-06 Score=91.70 Aligned_cols=227 Identities=18% Similarity=0.169 Sum_probs=164.0
Q ss_pred CEEEEEEecCCCcEEEEEECCCe-EEEEECCCCceEEEeeCCCCCe--EEEEEcCCCCEEEEEEc-----CCeEEEEEcC
Q 001462 17 NVNCISIGKKACRFLITGGDDQK-VNLWAIGKPTALMSLCGLSSPV--DSVAFDSAEVLVLAGAS-----TGVIKLWDLE 88 (1074)
Q Consensus 17 ~Vt~IafSPdg~~lLaTGs~DGt-V~IWDl~t~k~l~sl~~hs~~I--tsLafSpdg~~LatGs~-----DG~I~VWDl~ 88 (1074)
....++.+|.....++.+-.-|. ..+||..+++....+....+.- -.-.|++||++|++.-. .|.|-|||..
T Consensus 6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~ 85 (305)
T PF07433_consen 6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAA 85 (305)
T ss_pred cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECc
Confidence 34578889976678888887775 5789999998887765433321 24789999999998643 5899999998
Q ss_pred -CCeeEEEEeCCCCCeEEEEEcCCCCEEEEEEC------------------CCeEEEEECCCCeEEEEEe----CCCCCe
Q 001462 89 -ESKMVRTLTGHKSNCTAVEFHPFGEFFASGCM------------------DTNLKIWDIRKKGCIHTYK----GHTRGI 145 (1074)
Q Consensus 89 -tgk~i~tl~~h~~~VtsLafSPdg~~LaSgS~------------------DGsI~IWDi~tg~~v~~l~----~h~~~V 145 (1074)
..+.+.++..+.-.-..+.|.|||+.|+++.. +.++.+.|..+|+.+.... .|...|
T Consensus 86 ~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSi 165 (305)
T PF07433_consen 86 RGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSI 165 (305)
T ss_pred CCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccce
Confidence 67788888888877888999999998888732 2346677788888776643 366789
Q ss_pred EEEEEcCCCCEEEEEECCC-------eEEEEECCCCceEEEee-------ecCCCeEEEEEcCCCcEEEEEe-CCCeEEE
Q 001462 146 NTIRFTPDGRWVVSGGFDN-------VVKVWDLTAGKLLHDFK-------FHEGHIRSIDFHPLEFLLATGS-ADRTVKF 210 (1074)
Q Consensus 146 tsLafSPdG~~LaSgs~DG-------sI~VWDl~tgk~v~~~~-------~h~g~ItsLafSPdg~lLaTGS-~DGtI~I 210 (1074)
..+++.++|..++..-..| .|.+++. +..+..+. ...+.+-+|+++.++.++++.+ ..+.+.+
T Consensus 166 RHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~--g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~ 243 (305)
T PF07433_consen 166 RHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRR--GGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAV 243 (305)
T ss_pred eeEEecCCCcEEEEEecCCCCCccCCeEEEEcC--CCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEE
Confidence 9999999997665544433 2444443 33222222 2457799999999998776555 6778999
Q ss_pred EECCCCcEEEeeCCCCCCeEEEEEecCCCEEEEEECCc
Q 001462 211 WDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGFDDN 248 (1074)
Q Consensus 211 WDl~tg~~i~t~~~~~~~ItsIafSPDG~~LasGsd~~ 248 (1074)
||..++..+...... .+..++..+++ ++++...+.
T Consensus 244 ~d~~tg~~~~~~~l~--D~cGva~~~~~-f~~ssG~G~ 278 (305)
T PF07433_consen 244 WDAATGRLLGSVPLP--DACGVAPTDDG-FLVSSGQGQ 278 (305)
T ss_pred EECCCCCEeeccccC--ceeeeeecCCc-eEEeCCCcc
Confidence 999999988776543 34667777776 666555554
|
|
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.75 E-value=6.2e-09 Score=124.66 Aligned_cols=220 Identities=21% Similarity=0.341 Sum_probs=167.8
Q ss_pred eEEEEecCCCCEEEEEEecCCCcEEEEEECCCeEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEEEEcCC--eEEE
Q 001462 7 KLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTG--VIKL 84 (1074)
Q Consensus 7 ~v~~L~gHs~~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~k~l~sl~~hs~~ItsLafSpdg~~LatGs~DG--~I~V 84 (1074)
..+.|..|+..-+|++|+-+. +.|+.|+..|.|++|++.+|.......+|..+|+.+.-+.+|..+++.+.-. ...+
T Consensus 1093 ~w~~frd~~~~fTc~afs~~~-~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaL 1171 (1516)
T KOG1832|consen 1093 SWRSFRDETALFTCIAFSGGT-NHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSAL 1171 (1516)
T ss_pred cchhhhccccceeeEEeecCC-ceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHH
Confidence 456788899999999999987 8899999999999999999999999999999999999999998877765433 4779
Q ss_pred EEcCC-CeeEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeC----CCCCeEEEEEcCCCCEEEE
Q 001462 85 WDLEE-SKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKG----HTRGINTIRFTPDGRWVVS 159 (1074)
Q Consensus 85 WDl~t-gk~i~tl~~h~~~VtsLafSPdg~~LaSgS~DGsI~IWDi~tg~~v~~l~~----h~~~VtsLafSPdG~~LaS 159 (1074)
|++.. +...+.+. ...++.|+..-.+-+.|+......+||+.++..+.++-. ....-.+..|+|+..+++
T Consensus 1172 W~~~s~~~~~Hsf~----ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl- 1246 (1516)
T KOG1832|consen 1172 WDASSTGGPRHSFD----EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL- 1246 (1516)
T ss_pred hccccccCcccccc----ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe-
Confidence 99864 34444443 456788987655556666667799999999887666321 122236788999888665
Q ss_pred EECCCeEEEEECCCCceEEEeeecCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCCcEEEeeCCCCCCeEEEEEecCCC
Q 001462 160 GGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGR 239 (1074)
Q Consensus 160 gs~DGsI~VWDl~tgk~v~~~~~h~g~ItsLafSPdg~lLaTGS~DGtI~IWDl~tg~~i~t~~~~~~~ItsIafSPDG~ 239 (1074)
.|| .+||++..+.++.|...... ..-.|+|+|..++..+. |||+++++.++....... ..+.|...|.
T Consensus 1247 --ndG--vLWDvR~~~aIh~FD~ft~~-~~G~FHP~g~eVIINSE-----IwD~RTF~lLh~VP~Ldq--c~VtFNstG~ 1314 (1516)
T KOG1832|consen 1247 --NDG--VLWDVRIPEAIHRFDQFTDY-GGGGFHPSGNEVIINSE-----IWDMRTFKLLHSVPSLDQ--CAVTFNSTGD 1314 (1516)
T ss_pred --eCc--eeeeeccHHHHhhhhhheec-ccccccCCCceEEeech-----hhhhHHHHHHhcCccccc--eEEEeccCcc
Confidence 355 47999988888777644322 23359999999988664 999999998877654332 6788998888
Q ss_pred EEEEE
Q 001462 240 TLFSG 244 (1074)
Q Consensus 240 ~LasG 244 (1074)
.+++.
T Consensus 1315 VmYa~ 1319 (1516)
T KOG1832|consen 1315 VMYAM 1319 (1516)
T ss_pred chhhh
Confidence 87765
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.2e-06 Score=94.54 Aligned_cols=227 Identities=10% Similarity=-0.025 Sum_probs=153.0
Q ss_pred cEEEEEECCCeEEEEECCCCceEEEe-eCCCCCeEEEEEc-CCCCEEEEEEcCCeEEEEEcCCCeeEEEEeCCCCCeEEE
Q 001462 29 RFLITGGDDQKVNLWAIGKPTALMSL-CGLSSPVDSVAFD-SAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAV 106 (1074)
Q Consensus 29 ~lLaTGs~DGtV~IWDl~t~k~l~sl-~~hs~~ItsLafS-pdg~~LatGs~DG~I~VWDl~tgk~i~tl~~h~~~VtsL 106 (1074)
.+||.||..|...+|...+.+....+ ..|...|+-+.=. -...-+..++.|.++++++++.+.....+....-.+.++
T Consensus 85 ~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~ 164 (344)
T KOG4532|consen 85 VTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSL 164 (344)
T ss_pred cEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeeccccceeee
Confidence 47999999999999998765544333 2333333322111 122346677888888888886554333322122338899
Q ss_pred EEcCCCCEEEEEECCCeEEEEECCCCeE--EE-EEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEE-----
Q 001462 107 EFHPFGEFFASGCMDTNLKIWDIRKKGC--IH-TYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLH----- 178 (1074)
Q Consensus 107 afSPdg~~LaSgS~DGsI~IWDi~tg~~--v~-~l~~h~~~VtsLafSPdG~~LaSgs~DGsI~VWDl~tgk~v~----- 178 (1074)
.++++++++++.+....|..|.+..... +. ......+.-.+..|+.....+|++..||.+.|||++......
T Consensus 165 ~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~ss 244 (344)
T KOG4532|consen 165 HYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISS 244 (344)
T ss_pred EEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcc
Confidence 9999999999999989999998875432 22 122234445688999988999999999999999998754322
Q ss_pred EeeecCCCeEEEEEcCCC--cEEEEEeCCCeEEEEECCCCcEEEeeCCCC--------CCeEEEEEecCCCEEEEEECCc
Q 001462 179 DFKFHEGHIRSIDFHPLE--FLLATGSADRTVKFWDLETFELIGSTRPEV--------TGVHAITFHPDGRTLFSGFDDN 248 (1074)
Q Consensus 179 ~~~~h~g~ItsLafSPdg--~lLaTGS~DGtI~IWDl~tg~~i~t~~~~~--------~~ItsIafSPDG~~LasGsd~~ 248 (1074)
+-..|.|.+..+.|++.| .+|+..-.-+.+.+.|++++.....+.... ..|....|+.++..+.+.....
T Consensus 245 trp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~~ 324 (344)
T KOG4532|consen 245 TRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNELQ 324 (344)
T ss_pred cCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCcccccccchh
Confidence 233588999999999866 345555556789999999887554433221 2366777777777766665555
Q ss_pred EEEEEec
Q 001462 249 LKVYSWE 255 (1074)
Q Consensus 249 I~Vwd~~ 255 (1074)
+.=|.+.
T Consensus 325 ~ae~ni~ 331 (344)
T KOG4532|consen 325 GAEYNIL 331 (344)
T ss_pred hheeecc
Confidence 4445443
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.4e-05 Score=89.78 Aligned_cols=222 Identities=17% Similarity=0.146 Sum_probs=156.4
Q ss_pred eEEEEEcC-CCCEEEEEEcCC-eEEEEEcCCCeeEEEEeCCCCCeE--EEEEcCCCCEEEEEEC-----CCeEEEEECC-
Q 001462 61 VDSVAFDS-AEVLVLAGASTG-VIKLWDLEESKMVRTLTGHKSNCT--AVEFHPFGEFFASGCM-----DTNLKIWDIR- 130 (1074)
Q Consensus 61 ItsLafSp-dg~~LatGs~DG-~I~VWDl~tgk~i~tl~~h~~~Vt--sLafSPdg~~LaSgS~-----DGsI~IWDi~- 130 (1074)
...++.+| .+..++.+-.-| ...+||..+++....+....+.-. .-+|++||++|++.-. .|.|-|||..
T Consensus 7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~ 86 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAAR 86 (305)
T ss_pred ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcC
Confidence 45678888 455666666655 577999999998877754333322 3689999999998743 4889999998
Q ss_pred CCeEEEEEeCCCCCeEEEEEcCCCCEEEEEEC------------------CCeEEEEECCCCceEEEee----ecCCCeE
Q 001462 131 KKGCIHTYKGHTRGINTIRFTPDGRWVVSGGF------------------DNVVKVWDLTAGKLLHDFK----FHEGHIR 188 (1074)
Q Consensus 131 tg~~v~~l~~h~~~VtsLafSPdG~~LaSgs~------------------DGsI~VWDl~tgk~v~~~~----~h~g~It 188 (1074)
....+..+..+.-....+.+.|||+.|+++.. +..|.+.|..+|+++.+.. .|.-.|.
T Consensus 87 ~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiR 166 (305)
T PF07433_consen 87 GYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIR 166 (305)
T ss_pred CcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCcccccccee
Confidence 66778888888878889999999987877531 2357778888999887744 3777899
Q ss_pred EEEEcCCCcEEEEEeCCCe-------EEEEECCCCcEEEee-------CCCCCCeEEEEEecCCCEEEEEE--CCcEEEE
Q 001462 189 SIDFHPLEFLLATGSADRT-------VKFWDLETFELIGST-------RPEVTGVHAITFHPDGRTLFSGF--DDNLKVY 252 (1074)
Q Consensus 189 sLafSPdg~lLaTGS~DGt-------I~IWDl~tg~~i~t~-------~~~~~~ItsIafSPDG~~LasGs--d~~I~Vw 252 (1074)
.|++.++|..++..-..|. |-+|+... .+..+ ....+.+-+|+++.+|.++++++ .+.+.+|
T Consensus 167 HLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~--~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~ 244 (305)
T PF07433_consen 167 HLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGG--ALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVW 244 (305)
T ss_pred eEEecCCCcEEEEEecCCCCCccCCeEEEEcCCC--cceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEE
Confidence 9999999987776655442 44444332 22222 22346789999999999998865 4568999
Q ss_pred EecCCeeeeccccCCceeeEEEecCCCEEEEEEC
Q 001462 253 SWEPVICHDSVDMGWSTLGDLCINDGKLLGCSFY 286 (1074)
Q Consensus 253 d~~s~~~~~~l~~~~s~~~~l~spDGklLAsgs~ 286 (1074)
|..++......... ..+......++ ++++++.
T Consensus 245 d~~tg~~~~~~~l~-D~cGva~~~~~-f~~ssG~ 276 (305)
T PF07433_consen 245 DAATGRLLGSVPLP-DACGVAPTDDG-FLVSSGQ 276 (305)
T ss_pred ECCCCCEeeccccC-ceeeeeecCCc-eEEeCCC
Confidence 99998887766553 33333444444 6665543
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=98.66 E-value=4e-05 Score=83.59 Aligned_cols=212 Identities=17% Similarity=0.153 Sum_probs=136.6
Q ss_pred EEEEEcC-CCCEEEEEECCCeEEEEECCCCeEEEEEeCCCCCeEEEEEc-CCCCEEEEEECCCeEEEEECCCCceEEEee
Q 001462 104 TAVEFHP-FGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFT-PDGRWVVSGGFDNVVKVWDLTAGKLLHDFK 181 (1074)
Q Consensus 104 tsLafSP-dg~~LaSgS~DGsI~IWDi~tg~~v~~l~~h~~~VtsLafS-PdG~~LaSgs~DGsI~VWDl~tgk~v~~~~ 181 (1074)
.++.|.+ ++.++++--..+.|+.|+..++.... +.... ...+++. +++. |+.+... .+.++|..+++....+.
T Consensus 3 Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~g~-l~v~~~~-~~~~~d~~~g~~~~~~~ 77 (246)
T PF08450_consen 3 EGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPDGR-LYVADSG-GIAVVDPDTGKVTVLAD 77 (246)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTTSE-EEEEETT-CEEEEETTTTEEEEEEE
T ss_pred cceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccCCE-EEEEEcC-ceEEEecCCCcEEEEee
Confidence 3678998 56666665568999999988776543 33222 6777887 6654 5555554 45666999886654444
Q ss_pred e-----cCCCeEEEEEcCCCcEEEEEeCC--------CeEEEEECCCCcEEEeeCCCCCCeEEEEEecCCCEEEEEE--C
Q 001462 182 F-----HEGHIRSIDFHPLEFLLATGSAD--------RTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGF--D 246 (1074)
Q Consensus 182 ~-----h~g~ItsLafSPdg~lLaTGS~D--------GtI~IWDl~tg~~i~t~~~~~~~ItsIafSPDG~~LasGs--d 246 (1074)
. .....+.+++.++|++.++.... |.|..++.. ++..... ........|+|+|+++.|++.. .
T Consensus 78 ~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~-~~~~~pNGi~~s~dg~~lyv~ds~~ 155 (246)
T PF08450_consen 78 LPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVA-DGLGFPNGIAFSPDGKTLYVADSFN 155 (246)
T ss_dssp EETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEE-EEESSEEEEEEETTSSEEEEEETTT
T ss_pred ccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEe-cCcccccceEECCcchheeeccccc
Confidence 3 23457899999999977766543 568888887 5433332 2335568999999999888754 4
Q ss_pred CcEEEEEecCCee----ee---ccccCC-ceeeEEEecCCCEEEEEECCCeEEEEEcCCCceeeeecCCCCCCCCceeEE
Q 001462 247 DNLKVYSWEPVIC----HD---SVDMGW-STLGDLCINDGKLLGCSFYRNSVGIWVADVSHVEPYGVGAPEPDQSICTEV 318 (1074)
Q Consensus 247 ~~I~Vwd~~s~~~----~~---~l~~~~-s~~~~l~spDGklLAsgs~DGsV~IWDld~~~l~~~~~~~~~~~~~~ItsV 318 (1074)
+.|..|+++.... .. .+.... .+-.+.+..+|++.++....+.|.+++.+...+..+.+ + ...++++
T Consensus 156 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~G~~~~~i~~----p-~~~~t~~ 230 (246)
T PF08450_consen 156 GRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPDGKLLREIEL----P-VPRPTNC 230 (246)
T ss_dssp TEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETTSCEEEEEE-----S-SSSEEEE
T ss_pred ceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCCccEEEEEcC----C-CCCEEEE
Confidence 4577777753221 11 112221 24455566799988888889999999998555555543 3 3479999
Q ss_pred EE-cCCCCcc
Q 001462 319 KF-NPPGSHS 327 (1074)
Q Consensus 319 aF-SPDGs~~ 327 (1074)
+| -||.+.+
T Consensus 231 ~fgg~~~~~L 240 (246)
T PF08450_consen 231 AFGGPDGKTL 240 (246)
T ss_dssp EEESTTSSEE
T ss_pred EEECCCCCEE
Confidence 99 4676643
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.64 E-value=3e-07 Score=104.67 Aligned_cols=249 Identities=18% Similarity=0.182 Sum_probs=180.0
Q ss_pred cCCCCEEEEEEecCCCcEEEEEECCCeEEEEECCC---CceEEEeeCCCCCeEEEEEcCCCCEEEEEEc-CCeEEEEEcC
Q 001462 13 AHSANVNCISIGKKACRFLITGGDDQKVNLWAIGK---PTALMSLCGLSSPVDSVAFDSAEVLVLAGAS-TGVIKLWDLE 88 (1074)
Q Consensus 13 gHs~~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t---~k~l~sl~~hs~~ItsLafSpdg~~LatGs~-DG~I~VWDl~ 88 (1074)
-|.+-|+.+..... .++++++.||.++.|.-.. -+.+..+..|-..|.+++.+-+|.++++++. |..++++|++
T Consensus 7 mhrd~i~hv~~tka--~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvE 84 (558)
T KOG0882|consen 7 MHRDVITHVFPTKA--KFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVE 84 (558)
T ss_pred cccceeeeEeeehh--heEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEee
Confidence 48888888876655 5999999999999997533 2334445677888889999999999999887 9999999998
Q ss_pred CCeeEEEEeCCCCCeEEEEEcCCCC---EEEEE-ECCCeEEEEECCCCeE--EEEEeCCCCCeEEEEEcCCCCEEEEEEC
Q 001462 89 ESKMVRTLTGHKSNCTAVEFHPFGE---FFASG-CMDTNLKIWDIRKKGC--IHTYKGHTRGINTIRFTPDGRWVVSGGF 162 (1074)
Q Consensus 89 tgk~i~tl~~h~~~VtsLafSPdg~---~LaSg-S~DGsI~IWDi~tg~~--v~~l~~h~~~VtsLafSPdG~~LaSgs~ 162 (1074)
+-..+.-++...-+=.+..+...|. .++++ -.+|.+.++|-....+ ...-+-|..+|.++.+.+-+..+++...
T Consensus 85 n~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~ 164 (558)
T KOG0882|consen 85 NFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDI 164 (558)
T ss_pred ccchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccc
Confidence 8765543332222212222232332 34443 3478999999765442 2333458899999999999999999999
Q ss_pred CCeEEEEECCC------CceEEE---------eeecCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCCcEEEeeCC---
Q 001462 163 DNVVKVWDLTA------GKLLHD---------FKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRP--- 224 (1074)
Q Consensus 163 DGsI~VWDl~t------gk~v~~---------~~~h~g~ItsLafSPdg~lLaTGS~DGtI~IWDl~tg~~i~t~~~--- 224 (1074)
.|.|..|.... ...... +........++.|+|+|..+.+-+.|..|+++++.+++.+..+..
T Consensus 165 ~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t 244 (558)
T KOG0882|consen 165 SGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLT 244 (558)
T ss_pred cceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccch
Confidence 99999998762 112112 222455678999999999999999999999999998875543211
Q ss_pred -----------------------------C-CCCeEEEEEecCCCEEEEEECCcEEEEEecCCeeeecc
Q 001462 225 -----------------------------E-VTGVHAITFHPDGRTLFSGFDDNLKVYSWEPVICHDSV 263 (1074)
Q Consensus 225 -----------------------------~-~~~ItsIafSPDG~~LasGsd~~I~Vwd~~s~~~~~~l 263 (1074)
+ ...-+.+.|...|++|+.|.-=+|+|.++.+..+...+
T Consensus 245 ~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~gikvin~~tn~v~ri~ 313 (558)
T KOG0882|consen 245 DAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILGIKVINLDTNTVVRIL 313 (558)
T ss_pred hhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeecceeEEEEEeecCeEEEEe
Confidence 0 11235678999999999998888999999987775543
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.64 E-value=7.3e-07 Score=97.63 Aligned_cols=237 Identities=23% Similarity=0.357 Sum_probs=161.7
Q ss_pred CCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCCe-----eEEEEeCCC------------CCeEEEEEcCCCC--EEEEE
Q 001462 58 SSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESK-----MVRTLTGHK------------SNCTAVEFHPFGE--FFASG 118 (1074)
Q Consensus 58 s~~ItsLafSpdg~~LatGs~DG~I~VWDl~tgk-----~i~tl~~h~------------~~VtsLafSPdg~--~LaSg 118 (1074)
...|+++.|...|.||++|...|.|.+|.-.... ....+++|. ..|..+.|..++. .|+..
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls 105 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS 105 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence 4578999999999999999999999999754322 223344443 3578888877653 56666
Q ss_pred ECCCeEEEEECCCCe-------------------EE-----------------------EEE-eCCCCCeEEEEEcCCCC
Q 001462 119 CMDTNLKIWDIRKKG-------------------CI-----------------------HTY-KGHTRGINTIRFTPDGR 155 (1074)
Q Consensus 119 S~DGsI~IWDi~tg~-------------------~v-----------------------~~l-~~h~~~VtsLafSPdG~ 155 (1074)
+.|.+|++|.+.... .+ +.+ ..|...+.++.|..|..
T Consensus 106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~e 185 (460)
T COG5170 106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKE 185 (460)
T ss_pred cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchh
Confidence 789999999875320 00 001 24566688899998888
Q ss_pred EEEEEECCCeEEEEECCCCc---eEEEeeecC-----CCeEEEEEcCC-CcEEEEEeCCCeEEEEECCCCcE------EE
Q 001462 156 WVVSGGFDNVVKVWDLTAGK---LLHDFKFHE-----GHIRSIDFHPL-EFLLATGSADRTVKFWDLETFEL------IG 220 (1074)
Q Consensus 156 ~LaSgs~DGsI~VWDl~tgk---~v~~~~~h~-----g~ItsLafSPd-g~lLaTGS~DGtI~IWDl~tg~~------i~ 220 (1074)
.++++. |-.|.+|++.-.. .+..++.|. .-|++..|+|. .+.+...+..|.|++-|++.... +.
T Consensus 186 t~lSaD-dLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klf 264 (460)
T COG5170 186 TLLSAD-DLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLF 264 (460)
T ss_pred eeeecc-ceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhh
Confidence 777764 7789999886432 233344443 34788889995 45566667789999999984221 11
Q ss_pred e----------eCCCCCCeEEEEEecCCCEEEEEECCcEEEEEecCCe-eeecccc----------------CCceeeEE
Q 001462 221 S----------TRPEVTGVHAITFHPDGRTLFSGFDDNLKVYSWEPVI-CHDSVDM----------------GWSTLGDL 273 (1074)
Q Consensus 221 t----------~~~~~~~ItsIafSPDG~~LasGsd~~I~Vwd~~s~~-~~~~l~~----------------~~s~~~~l 273 (1074)
. +......|..+.|+++|+|+++-.-.+++|||..... ++..+++ -+....+.
T Consensus 265 e~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFeis 344 (460)
T COG5170 265 ELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYLTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFEIS 344 (460)
T ss_pred hhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEEEE
Confidence 1 1112235788999999999999888899999987532 3333222 13344556
Q ss_pred EecCCCEEEEEECCCeEEEEEc
Q 001462 274 CINDGKLLGCSFYRNSVGIWVA 295 (1074)
Q Consensus 274 ~spDGklLAsgs~DGsV~IWDl 295 (1074)
|+-|.+.+.+|++.+...||-.
T Consensus 345 fSgd~~~v~sgsy~NNfgiyp~ 366 (460)
T COG5170 345 FSGDDKHVLSGSYSNNFGIYPT 366 (460)
T ss_pred ecCCcccccccccccceeeecc
Confidence 6778888999998888888853
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=98.60 E-value=2.5e-05 Score=94.20 Aligned_cols=267 Identities=12% Similarity=0.069 Sum_probs=159.6
Q ss_pred EEEEEECCCeEEEEECCCCceEEEeeCCCC------CeE--EEEEcCCCCEEEEEEcCCeEEEEEcCCCeeEEEEeCCCC
Q 001462 30 FLITGGDDQKVNLWAIGKPTALMSLCGLSS------PVD--SVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKS 101 (1074)
Q Consensus 30 lLaTGs~DGtV~IWDl~t~k~l~sl~~hs~------~It--sLafSpdg~~LatGs~DG~I~VWDl~tgk~i~tl~~h~~ 101 (1074)
.++.++.++.|+-+|..+++.+..+..... .+. .+.+. ++..++.++.+|.|..+|.++|+.+..+.....
T Consensus 63 ~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~ 141 (488)
T cd00216 63 DMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFGNNDQ 141 (488)
T ss_pred EEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeecCCCC
Confidence 567778889999999999988877653322 000 11111 226788888899999999999999988764332
Q ss_pred C-----e-EEEEEcCCCCEEEEEE---------CCCeEEEEECCCCeEEEEEeCCCCC--------------------e-
Q 001462 102 N-----C-TAVEFHPFGEFFASGC---------MDTNLKIWDIRKKGCIHTYKGHTRG--------------------I- 145 (1074)
Q Consensus 102 ~-----V-tsLafSPdg~~LaSgS---------~DGsI~IWDi~tg~~v~~l~~h~~~--------------------V- 145 (1074)
. + ....+. +..+++++ .+|.|+.+|..+|+.+..+...... +
T Consensus 142 ~~~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw 219 (488)
T cd00216 142 VPPGYTMTGAPTIV--KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSW 219 (488)
T ss_pred cCcceEecCCCEEE--CCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCcc
Confidence 1 1 112222 24455553 3688999999999988877542110 0
Q ss_pred EEEEEcCCCCEEEEEECCC------------------eEEEEECCCCceEEEeeecCCCeE------EEEEc----CCCc
Q 001462 146 NTIRFTPDGRWVVSGGFDN------------------VVKVWDLTAGKLLHDFKFHEGHIR------SIDFH----PLEF 197 (1074)
Q Consensus 146 tsLafSPdG~~LaSgs~DG------------------sI~VWDl~tgk~v~~~~~h~g~It------sLafS----Pdg~ 197 (1074)
...++.+.+..++.++.++ .|.-+|..+|+.+..++....... ...+. -++.
T Consensus 220 ~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~ 299 (488)
T cd00216 220 ASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGK 299 (488)
T ss_pred CCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCC
Confidence 1234444566777776665 799999999999988763211111 01111 1232
Q ss_pred ---EEEEEeCCCeEEEEECCCCcEEEeeCCCCCCeEEEEEecCCCEEEEE-------------------ECCcEEEEEec
Q 001462 198 ---LLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSG-------------------FDDNLKVYSWE 255 (1074)
Q Consensus 198 ---lLaTGS~DGtI~IWDl~tg~~i~t~~~~~~~ItsIafSPDG~~LasG-------------------sd~~I~Vwd~~ 255 (1074)
.+++++.+|.+..+|..+|+.+....... ..++.+| ..++.+ .++.+.-+|..
T Consensus 300 ~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~---~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~ 374 (488)
T cd00216 300 PVPAIVHAPKNGFFYVLDRTTGKLISARPEVE---QPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPK 374 (488)
T ss_pred eeEEEEEECCCceEEEEECCCCcEeeEeEeec---cccccCC--ceEEEccccccccCcccccCCCCCCCceEEEEEeCC
Confidence 67888889999999999999887654211 1122222 111111 12234444444
Q ss_pred CCeeeeccccC---------CceeeEEEecCCCEEEEEECCCeEEEEEcCCCceeeee
Q 001462 256 PVICHDSVDMG---------WSTLGDLCINDGKLLGCSFYRNSVGIWVADVSHVEPYG 304 (1074)
Q Consensus 256 s~~~~~~l~~~---------~s~~~~l~spDGklLAsgs~DGsV~IWDld~~~l~~~~ 304 (1074)
+++..-..... .........-.+.+|++++.||.|+.+|.++++..+..
T Consensus 375 tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald~~tG~~lW~~ 432 (488)
T cd00216 375 TGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFDATTGKELWKF 432 (488)
T ss_pred CCcEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEECCCCceeeEE
Confidence 44333322222 11111111235677888889999999999888877654
|
The alignment model contains an 8-bladed beta-propeller. |
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.6e-06 Score=104.76 Aligned_cols=181 Identities=24% Similarity=0.311 Sum_probs=138.6
Q ss_pred CCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeeEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEE
Q 001462 59 SPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTY 138 (1074)
Q Consensus 59 ~~ItsLafSpdg~~LatGs~DG~I~VWDl~tgk~i~tl~~h~~~VtsLafSPdg~~LaSgS~DGsI~IWDi~tg~~v~~l 138 (1074)
..+.|++++ +++|+.|+.+|.|++++.... . .....|... ..+|.++++|+.||.|.|..+.+.+..+.+
T Consensus 40 D~is~~av~--~~~~~~GtH~g~v~~~~~~~~-~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~ 109 (846)
T KOG2066|consen 40 DAISCCAVH--DKFFALGTHRGAVYLTTCQGN-P-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQY 109 (846)
T ss_pred hHHHHHHhh--cceeeeccccceEEEEecCCc-c-ccccccccc------ccCCceEEEecCCCcEEEeeccCCccceeE
Confidence 456677776 779999999999999997543 3 333334433 667999999999999999999988888777
Q ss_pred eCCCCCeEEEEEcCC-----CCEEEEEECCCeEEEEECCC--CceEEEeeecCCCeEEEEEcCCCcEEEEEeCCCeEEEE
Q 001462 139 KGHTRGINTIRFTPD-----GRWVVSGGFDNVVKVWDLTA--GKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFW 211 (1074)
Q Consensus 139 ~~h~~~VtsLafSPd-----G~~LaSgs~DGsI~VWDl~t--gk~v~~~~~h~g~ItsLafSPdg~lLaTGS~DGtI~IW 211 (1074)
. ...++.+++++|+ .+.+++||..| +.++.-.- .+....+....|+|.++.|. |+++|-++.+| |++|
T Consensus 110 d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~G-v~vy 184 (846)
T KOG2066|consen 110 D-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDG-VKVY 184 (846)
T ss_pred e-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCC-cEEE
Confidence 6 4568999999997 56899999888 77775321 12222455567999999996 88999988766 8999
Q ss_pred ECCCCcEEEeeCCCCCC------eEEEEEecCCCEEEEEECCcEEEEEec
Q 001462 212 DLETFELIGSTRPEVTG------VHAITFHPDGRTLFSGFDDNLKVYSWE 255 (1074)
Q Consensus 212 Dl~tg~~i~t~~~~~~~------ItsIafSPDG~~LasGsd~~I~Vwd~~ 255 (1074)
|+.+.+.+..+...... ...+.|.++ ..|+.|..++|+|..+.
T Consensus 185 d~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~-~~LVIGW~d~v~i~~I~ 233 (846)
T KOG2066|consen 185 DTPTRQRLTNIPPPSQSVRPELFPPHLHWQDE-DRLVIGWGDSVKICSIK 233 (846)
T ss_pred eccccceeeccCCCCCCCCcccCCCceEecCC-CeEEEecCCeEEEEEEe
Confidence 99998888777655443 345677765 56788999999999887
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=98.56 E-value=7.3e-07 Score=96.01 Aligned_cols=203 Identities=19% Similarity=0.271 Sum_probs=125.4
Q ss_pred EecCCC-CEEEEEEecCCCcEEEEEECCCeEEEEECCCCce------------EEEeeCCCCCeEEEEEcCCCCEEEEEE
Q 001462 11 FVAHSA-NVNCISIGKKACRFLITGGDDQKVNLWAIGKPTA------------LMSLCGLSSPVDSVAFDSAEVLVLAGA 77 (1074)
Q Consensus 11 L~gHs~-~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~k~------------l~sl~~hs~~ItsLafSpdg~~LatGs 77 (1074)
.-+|.+ .|..+.|..+ ..|+++..++.+..+....+.+ .+.+..|.++-.+-+.+--++-+++++
T Consensus 31 i~~~~d~~~~~~~~v~~--~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~ 108 (319)
T KOG4714|consen 31 IMQHADVKLSKVSLSAE--YILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGY 108 (319)
T ss_pred cccccceEEEEeechhh--heeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecC
Confidence 334443 2555556555 4677777777666554433222 222223333322223333466789999
Q ss_pred cCCeEEEEEcCCCe-eEEEEeCCCCCeEEEEEcCCCCEEEEEE-----CCCeEEEEECCCCeEEEEEeCCCCCeEEEEEc
Q 001462 78 STGVIKLWDLEESK-MVRTLTGHKSNCTAVEFHPFGEFFASGC-----MDTNLKIWDIRKKGCIHTYKGHTRGINTIRFT 151 (1074)
Q Consensus 78 ~DG~I~VWDl~tgk-~i~tl~~h~~~VtsLafSPdg~~LaSgS-----~DGsI~IWDi~tg~~v~~l~~h~~~VtsLafS 151 (1074)
.||.+.+++.+.-. ....+......-.+.++...++++.++. .-+..++|+++..+.+..-+.....|.+++-+
T Consensus 109 ~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~l~~h 188 (319)
T KOG4714|consen 109 ADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTALCSH 188 (319)
T ss_pred CCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeecccccccccccccccccchhhhCC
Confidence 99999999976511 1111111111122233344455554432 12457777776554433323233459999999
Q ss_pred CCC-CEEEEEECCCeEEEEECCCCce-EEEeeecCCCeEEEEEcC-CCcEEEEEeCCCeEEEEECCC
Q 001462 152 PDG-RWVVSGGFDNVVKVWDLTAGKL-LHDFKFHEGHIRSIDFHP-LEFLLATGSADRTVKFWDLET 215 (1074)
Q Consensus 152 PdG-~~LaSgs~DGsI~VWDl~tgk~-v~~~~~h~g~ItsLafSP-dg~lLaTGS~DGtI~IWDl~t 215 (1074)
|.. ..+++|+.||.+.+||.+.... +..++.|+.+++.+.|+| ++..|++++.||.+..||..+
T Consensus 189 p~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 189 PAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred cccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 954 5677888999999999988743 445678999999999999 568899999999999999875
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.54 E-value=7.8e-07 Score=105.83 Aligned_cols=283 Identities=18% Similarity=0.233 Sum_probs=181.6
Q ss_pred CCCEEEEEEecCCCcEEEEEECCCeEEEEECCCCceEEEeeCCC--CCeEEEEEcCCC--CEEEEEEcCCeEEEEEcCC-
Q 001462 15 SANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLS--SPVDSVAFDSAE--VLVLAGASTGVIKLWDLEE- 89 (1074)
Q Consensus 15 s~~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~k~l~sl~~hs--~~ItsLafSpdg--~~LatGs~DG~I~VWDl~t- 89 (1074)
.+++..+.++|.| +-++.++.-| +.+.|+...-....+..|. -.|....|++.. .+-++......-.+|++..
T Consensus 24 ~~~~~a~si~p~g-rdi~lAsr~g-l~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~s 101 (1081)
T KOG0309|consen 24 DGGFNAVSINPSG-RDIVLASRQG-LYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKS 101 (1081)
T ss_pred cCcccceeecccc-chhhhhhhcC-eEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcC
Confidence 4678889999998 6677777766 5566765543322222232 346778888743 4555555566677898853
Q ss_pred --CeeEEEEeCCCCCeEEEEEcCCC-CEEEEEECCCeEEEEECCCCe-EEEEEeCCCCCeEEEEEcCCCCEEEEEECCCe
Q 001462 90 --SKMVRTLTGHKSNCTAVEFHPFG-EFFASGCMDTNLKIWDIRKKG-CIHTYKGHTRGINTIRFTPDGRWVVSGGFDNV 165 (1074)
Q Consensus 90 --gk~i~tl~~h~~~VtsLafSPdg-~~LaSgS~DGsI~IWDi~tg~-~v~~l~~h~~~VtsLafSPdG~~LaSgs~DGs 165 (1074)
...-..+.+|...|+.+-|+|+. ..+++++.|..+..||+++-. .+..+.........++|+-....+++.+....
T Consensus 102 s~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~ 181 (1081)
T KOG0309|consen 102 SSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGND 181 (1081)
T ss_pred CccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCc
Confidence 33445567899999999999976 478899999999999998754 44555444456788999874444555667788
Q ss_pred EEEEECCCC-ceEEEeeecCCCeEEEEEcCC-CcEEEEEeCCCeEEEEECCCCcE-EEeeCCCCCCeEEEEEecCCCEEE
Q 001462 166 VKVWDLTAG-KLLHDFKFHEGHIRSIDFHPL-EFLLATGSADRTVKFWDLETFEL-IGSTRPEVTGVHAITFHPDGRTLF 242 (1074)
Q Consensus 166 I~VWDl~tg-k~v~~~~~h~g~ItsLafSPd-g~lLaTGS~DGtI~IWDl~tg~~-i~t~~~~~~~ItsIafSPDG~~La 242 (1074)
|.+||++.| .++..+++|-..|..+.|+.. ...+.+.+.||+|++||..+... .........+|..-.|.|-|.-.+
T Consensus 182 i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~ 261 (1081)
T KOG0309|consen 182 IFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYC 261 (1081)
T ss_pred eEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeE
Confidence 999999876 467788888888999988763 35677888999999999875432 222333445667777777554433
Q ss_pred EE---ECCcEEEEEecC----------CeeeeccccCCceeeEEEe-----cC------CCEEEEEECCCeEEEEEcCCC
Q 001462 243 SG---FDDNLKVYSWEP----------VICHDSVDMGWSTLGDLCI-----ND------GKLLGCSFYRNSVGIWVADVS 298 (1074)
Q Consensus 243 sG---sd~~I~Vwd~~s----------~~~~~~l~~~~s~~~~l~s-----pD------GklLAsgs~DGsV~IWDld~~ 298 (1074)
.- +++.+.+++-+. ...+..+..+...+--+.+ .+ .-.|++-+.|..+++|-++..
T Consensus 262 ~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~~ 341 (1081)
T KOG0309|consen 262 IMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDSQ 341 (1081)
T ss_pred eccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccHH
Confidence 31 122233333221 1122222222221111111 11 125888899999999988644
Q ss_pred c
Q 001462 299 H 299 (1074)
Q Consensus 299 ~ 299 (1074)
.
T Consensus 342 i 342 (1081)
T KOG0309|consen 342 I 342 (1081)
T ss_pred H
Confidence 3
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.53 E-value=4.9e-05 Score=87.82 Aligned_cols=277 Identities=14% Similarity=0.108 Sum_probs=151.5
Q ss_pred CCeEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeeEEEEeCC-----------------
Q 001462 37 DQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGH----------------- 99 (1074)
Q Consensus 37 DGtV~IWDl~t~k~l~sl~~hs~~ItsLafSpdg~~LatGs~DG~I~VWDl~tgk~i~tl~~h----------------- 99 (1074)
.+.+.|||+.+++...... ....+....|+|+|+.++... ++.|.+++..++...+.....
T Consensus 22 ~~~y~i~d~~~~~~~~l~~-~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv 99 (353)
T PF00930_consen 22 KGDYYIYDIETGEITPLTP-PPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEV 99 (353)
T ss_dssp EEEEEEEETTTTEEEESS--EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHT
T ss_pred ceeEEEEecCCCceEECcC-CccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccc
Confidence 4678999998865443332 256788999999999999885 678999998877544322211
Q ss_pred CCCeEEEEEcCCCCEEEEEECC-CeEEEEECCCCeEEEEEeCCC---CCeEEEEEcCCCCEEEEEECCCeEEEEECCCCc
Q 001462 100 KSNCTAVEFHPFGEFFASGCMD-TNLKIWDIRKKGCIHTYKGHT---RGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGK 175 (1074)
Q Consensus 100 ~~~VtsLafSPdg~~LaSgS~D-GsI~IWDi~tg~~v~~l~~h~---~~VtsLafSPdG~~LaSgs~DGsI~VWDl~tgk 175 (1074)
-+.-..+.|+||+++|+....| ..|..+.+- .+.... ..+..+.+-.-|.-... -.+.++|+.+++
T Consensus 100 ~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~------~~~~~~~~yp~~~~~~YPk~G~~np~----v~l~v~~~~~~~ 169 (353)
T PF00930_consen 100 FDRRSAVWWSPDSKYLAFLRFDEREVPEYPLP------DYSPPDSQYPEVESIRYPKAGDPNPR----VSLFVVDLASGK 169 (353)
T ss_dssp SSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEE------EESSSTESS-EEEEEE--BTTS---E----EEEEEEESSSTC
T ss_pred cccccceEECCCCCEEEEEEECCcCCceEEee------ccCCccccCCcccccccCCCCCcCCc----eEEEEEECCCCc
Confidence 1223568899999998887543 333333321 111111 12444444333332211 247788998887
Q ss_pred eEE-Eee----ecCCCeEEEEEcCCCcEEEEEeCC-----CeEEEEECCCCcEEEeeC-CCCC---CeEEEEEe-cCCCE
Q 001462 176 LLH-DFK----FHEGHIRSIDFHPLEFLLATGSAD-----RTVKFWDLETFELIGSTR-PEVT---GVHAITFH-PDGRT 240 (1074)
Q Consensus 176 ~v~-~~~----~h~g~ItsLafSPdg~lLaTGS~D-----GtI~IWDl~tg~~i~t~~-~~~~---~ItsIafS-PDG~~ 240 (1074)
... ... .....+..+.|.+++..|+..-.+ ..+.++|..++....... ...+ ....+.|. +++..
T Consensus 170 ~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~ 249 (353)
T PF00930_consen 170 TTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNE 249 (353)
T ss_dssp CCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSE
T ss_pred EEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCE
Confidence 532 111 234568899999999844443322 247778887765432221 1112 23456665 66665
Q ss_pred EEE-EE-CCc--EEEEEecCCeeeeccccCCceeeEEEe-cCCCEEE-EEEC--CCeEEEEEcCCC-ceeeeecCCCCCC
Q 001462 241 LFS-GF-DDN--LKVYSWEPVICHDSVDMGWSTLGDLCI-NDGKLLG-CSFY--RNSVGIWVADVS-HVEPYGVGAPEPD 311 (1074)
Q Consensus 241 Las-Gs-d~~--I~Vwd~~s~~~~~~l~~~~s~~~~l~s-pDGklLA-sgs~--DGsV~IWDld~~-~l~~~~~~~~~~~ 311 (1074)
++. .. +|. |.+++.............|.+...+.. .+++.|. ++.. .+.-+||.++.. ......+. ..
T Consensus 250 ~l~~s~~~G~~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT---~~ 326 (353)
T PF00930_consen 250 FLWISERDGYRHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLT---CE 326 (353)
T ss_dssp EEEEEETTSSEEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESS---TT
T ss_pred EEEEEEcCCCcEEEEEcccccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEecc---CC
Confidence 554 33 232 666777777666666677777554443 5656554 4433 245677766544 33333322 11
Q ss_pred CCceeEEEEcCCCCcce
Q 001462 312 QSICTEVKFNPPGSHSL 328 (1074)
Q Consensus 312 ~~~ItsVaFSPDGs~~L 328 (1074)
.+....+.|||||+.++
T Consensus 327 ~~~~~~~~~Spdg~y~v 343 (353)
T PF00930_consen 327 DGDHYSASFSPDGKYYV 343 (353)
T ss_dssp SSTTEEEEE-TTSSEEE
T ss_pred CCCceEEEECCCCCEEE
Confidence 22227899999999533
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.49 E-value=2.2e-06 Score=96.98 Aligned_cols=160 Identities=18% Similarity=0.331 Sum_probs=113.7
Q ss_pred EEEEEecCCCcEEEEEECCCeEEEEECCCCce---EEEeeCCCCCeEEEEEcCCCCEEEEEEcC---CeEEEEEcCCCee
Q 001462 19 NCISIGKKACRFLITGGDDQKVNLWAIGKPTA---LMSLCGLSSPVDSVAFDSAEVLVLAGAST---GVIKLWDLEESKM 92 (1074)
Q Consensus 19 t~IafSPdg~~lLaTGs~DGtV~IWDl~t~k~---l~sl~~hs~~ItsLafSpdg~~LatGs~D---G~I~VWDl~tgk~ 92 (1074)
..+..++++ ++||++..+....++++..... +..........+++.|..+......+..- +.+.+|....+..
T Consensus 66 ~~~~~s~~~-~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~ 144 (390)
T KOG3914|consen 66 ALVLTSDSG-RLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRC 144 (390)
T ss_pred cccccCCCc-eEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccccCc
Confidence 344566666 8888888888776776633221 22222233344556666555555554444 4555666555443
Q ss_pred EEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEE-eCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEC
Q 001462 93 VRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTY-KGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDL 171 (1074)
Q Consensus 93 i~tl~~h~~~VtsLafSPdg~~LaSgS~DGsI~IWDi~tg~~v~~l-~~h~~~VtsLafSPdG~~LaSgs~DGsI~VWDl 171 (1074)
..+-+|-.-+++++|+||+++|+++..|.+|++-.+..--.+..+ -+|...|..++..++ ..|++|+.|++|++||+
T Consensus 145 -~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~sGD~tlr~Wd~ 222 (390)
T KOG3914|consen 145 -EPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGSGDKTLRLWDI 222 (390)
T ss_pred -chhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecCCCCcEEEEec
Confidence 344579999999999999999999999999999887665555555 469999999999864 56899999999999999
Q ss_pred CCCceEEEee
Q 001462 172 TAGKLLHDFK 181 (1074)
Q Consensus 172 ~tgk~v~~~~ 181 (1074)
.+|+.+..+.
T Consensus 223 ~sgk~L~t~d 232 (390)
T KOG3914|consen 223 TSGKLLDTCD 232 (390)
T ss_pred ccCCcccccc
Confidence 9999887665
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.46 E-value=3.7e-06 Score=92.23 Aligned_cols=236 Identities=19% Similarity=0.333 Sum_probs=158.3
Q ss_pred CCCEEEEEEecCCCcEEEEEECCCeEEEEECCCCc-----eEEEeeCCC------------CCeEEEEEcCCC--CEEEE
Q 001462 15 SANVNCISIGKKACRFLITGGDDQKVNLWAIGKPT-----ALMSLCGLS------------SPVDSVAFDSAE--VLVLA 75 (1074)
Q Consensus 15 s~~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~k-----~l~sl~~hs------------~~ItsLafSpdg--~~Lat 75 (1074)
.+.|+++.|...| .||++|...|.|.+|.-.... .+..+++|. ..|..+.|..++ ..++.
T Consensus 26 ad~ItaVefd~tg-~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 26 ADKITAVEFDETG-LYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred cceeeEEEecccc-ceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 4679999999988 899999999999999764322 223344443 347788888654 46777
Q ss_pred EEcCCeEEEEEcCCCe-------------------e------------------E-----EEE-eCCCCCeEEEEEcCCC
Q 001462 76 GASTGVIKLWDLEESK-------------------M------------------V-----RTL-TGHKSNCTAVEFHPFG 112 (1074)
Q Consensus 76 Gs~DG~I~VWDl~tgk-------------------~------------------i-----~tl-~~h~~~VtsLafSPdg 112 (1074)
.+.|.+|++|.+.... . + +.. ..|...|.++.|+.|.
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~ 184 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK 184 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence 7889999999875320 0 0 011 2466678899999998
Q ss_pred CEEEEEECCCeEEEEECCCCe---EEEEEeCCC-----CCeEEEEEcCC-CCEEEEEECCCeEEEEECCCCce------E
Q 001462 113 EFFASGCMDTNLKIWDIRKKG---CIHTYKGHT-----RGINTIRFTPD-GRWVVSGGFDNVVKVWDLTAGKL------L 177 (1074)
Q Consensus 113 ~~LaSgS~DGsI~IWDi~tg~---~v~~l~~h~-----~~VtsLafSPd-G~~LaSgs~DGsI~VWDl~tgk~------v 177 (1074)
..++++ .|=.|.+|++.--. .+-.++.|. .-|++..|+|. ...+...+..|.|++-|++...+ +
T Consensus 185 et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~kl 263 (460)
T COG5170 185 ETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKL 263 (460)
T ss_pred heeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhh
Confidence 888886 57789999876322 122333333 34788899994 34566677899999999985321 1
Q ss_pred EE----------eeecCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCC-cEEEeeCCCCC------------C---eEE
Q 001462 178 HD----------FKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETF-ELIGSTRPEVT------------G---VHA 231 (1074)
Q Consensus 178 ~~----------~~~h~g~ItsLafSPdg~lLaTGS~DGtI~IWDl~tg-~~i~t~~~~~~------------~---Its 231 (1074)
.. +..--..|..+.|+++|+++++-+. -+++|||++.. .++.++.-|.. . --.
T Consensus 264 fe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFe 342 (460)
T COG5170 264 FELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFE 342 (460)
T ss_pred hhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEE
Confidence 10 1112345888999999999987665 68999999853 35555433321 1 235
Q ss_pred EEEecCCCEEEEEEC-CcEEEEE
Q 001462 232 ITFHPDGRTLFSGFD-DNLKVYS 253 (1074)
Q Consensus 232 IafSPDG~~LasGsd-~~I~Vwd 253 (1074)
+.|+.|.+.+.+|+- +..-+|-
T Consensus 343 isfSgd~~~v~sgsy~NNfgiyp 365 (460)
T COG5170 343 ISFSGDDKHVLSGSYSNNFGIYP 365 (460)
T ss_pred EEecCCcccccccccccceeeec
Confidence 678888888887743 3344444
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.7e-06 Score=98.00 Aligned_cols=161 Identities=18% Similarity=0.276 Sum_probs=118.1
Q ss_pred CeEEEEEcCCCCEEEEEEcCCeEEEEEcCCCee----EEEEeCCCCCeEEEEEcCCCCEEEEEECCCe---EEEEECCCC
Q 001462 60 PVDSVAFDSAEVLVLAGASTGVIKLWDLEESKM----VRTLTGHKSNCTAVEFHPFGEFFASGCMDTN---LKIWDIRKK 132 (1074)
Q Consensus 60 ~ItsLafSpdg~~LatGs~DG~I~VWDl~tgk~----i~tl~~h~~~VtsLafSPdg~~LaSgS~DGs---I~IWDi~tg 132 (1074)
.+..+.+++.+++||++..+....++++..... .... .....-+++.|..+.....++...|. +.+|....+
T Consensus 64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~-~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~ 142 (390)
T KOG3914|consen 64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVS-CVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSG 142 (390)
T ss_pred cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEe-ecccCcceeeeeeccceEEEEeecCCceeeeeeccccc
Confidence 344566788899999998888877777754432 2222 23344456666666666666544444 555554444
Q ss_pred eEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEee-ecCCCeEEEEEcCCCcEEEEEeCCCeEEEE
Q 001462 133 GCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFK-FHEGHIRSIDFHPLEFLLATGSADRTVKFW 211 (1074)
Q Consensus 133 ~~v~~l~~h~~~VtsLafSPdG~~LaSgs~DGsI~VWDl~tgk~v~~~~-~h~g~ItsLafSPdg~lLaTGS~DGtI~IW 211 (1074)
. ...+-+|-..+..++|+||+++|+++..|..|++-.......+..|- +|...|..++.-++ ..|++|+.|++|++|
T Consensus 143 ~-~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~sGD~tlr~W 220 (390)
T KOG3914|consen 143 R-CEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGSGDKTLRLW 220 (390)
T ss_pred C-cchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecCCCCcEEEE
Confidence 3 33445788999999999999999999999999998887666666654 69999999999865 458899999999999
Q ss_pred ECCCCcEEEeeC
Q 001462 212 DLETFELIGSTR 223 (1074)
Q Consensus 212 Dl~tg~~i~t~~ 223 (1074)
|+.+|+.+..+.
T Consensus 221 d~~sgk~L~t~d 232 (390)
T KOG3914|consen 221 DITSGKLLDTCD 232 (390)
T ss_pred ecccCCcccccc
Confidence 999999886543
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=98.44 E-value=4.6e-06 Score=92.83 Aligned_cols=251 Identities=18% Similarity=0.262 Sum_probs=174.2
Q ss_pred CceEEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcC-CCeeEEEEe-CCCCCeEEEEEcCCCCEEEEEECCCeEE
Q 001462 48 PTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLE-ESKMVRTLT-GHKSNCTAVEFHPFGEFFASGCMDTNLK 125 (1074)
Q Consensus 48 ~k~l~sl~~hs~~ItsLafSpdg~~LatGs~DG~I~VWDl~-tgk~i~tl~-~h~~~VtsLafSPdg~~LaSgS~DGsI~ 125 (1074)
...+..+.+|...+++...-|...-+++.+.|.+++||--. .++.-..+. .-..+++++.+.+....|++|-..|++.
T Consensus 14 p~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvt 93 (404)
T KOG1409|consen 14 PELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVT 93 (404)
T ss_pred hhhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEE
Confidence 34456678888888888888877889999999999999543 344333332 2356789999999999999999999999
Q ss_pred EEECC----CCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeeecCCCeEEEEEcCCCcEEEE
Q 001462 126 IWDIR----KKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLAT 201 (1074)
Q Consensus 126 IWDi~----tg~~v~~l~~h~~~VtsLafSPdG~~LaSgs~DGsI~VWDl~tgk~v~~~~~h~g~ItsLafSPdg~lLaT 201 (1074)
-+.+. .....+.+..|...+..+-|+-...++++.+.|..+.-.-.+.+..+..+.. .....++.|.-. +.+.
T Consensus 94 efs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~-~~~~t~~~~d~~--~~fv 170 (404)
T KOG1409|consen 94 EFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNF-ETPASALQFDAL--YAFV 170 (404)
T ss_pred EEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEe-eccCCCCceeeE--EEEe
Confidence 88653 4455666778999999999999889999999998776555555544433221 111112222111 5556
Q ss_pred EeCCCeEEEEEC--CCCcEEEeeCCCCCCeEEEEEecCCCEEEEE-ECCcEEEEEecCCeeee--ccccCCceeeEEEec
Q 001462 202 GSADRTVKFWDL--ETFELIGSTRPEVTGVHAITFHPDGRTLFSG-FDDNLKVYSWEPVICHD--SVDMGWSTLGDLCIN 276 (1074)
Q Consensus 202 GS~DGtI~IWDl--~tg~~i~t~~~~~~~ItsIafSPDG~~LasG-sd~~I~Vwd~~s~~~~~--~l~~~~s~~~~l~sp 276 (1074)
|...|.|.+..+ ..-..+..+.+|.+.+.++.|.+....|++| .+..+.+||+....... .+.....+......+
T Consensus 171 Gd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~ 250 (404)
T KOG1409|consen 171 GDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQ 250 (404)
T ss_pred cccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhh
Confidence 666676665544 3456788899999999999999999999997 45669999987544322 222221222222224
Q ss_pred CCCEEEEEECCCeEEEEEcCCCcee
Q 001462 277 DGKLLGCSFYRNSVGIWVADVSHVE 301 (1074)
Q Consensus 277 DGklLAsgs~DGsV~IWDld~~~l~ 301 (1074)
--+.|++++.||.|.+|+.+....+
T Consensus 251 ~t~~l~S~~edg~i~~w~mn~~r~e 275 (404)
T KOG1409|consen 251 HTRQLISCGEDGGIVVWNMNVKRVE 275 (404)
T ss_pred hheeeeeccCCCeEEEEeccceeec
Confidence 4566777889999999998765544
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.43 E-value=7.5e-07 Score=105.96 Aligned_cols=207 Identities=23% Similarity=0.311 Sum_probs=148.4
Q ss_pred EEEecCCCCEEEEEEecCCCcEEEEEECCCeEEEEECCCCc-eEEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEc
Q 001462 9 QEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPT-ALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDL 87 (1074)
Q Consensus 9 ~~L~gHs~~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~k-~l~sl~~hs~~ItsLafSpdg~~LatGs~DG~I~VWDl 87 (1074)
..++||..+|+.+.|+|....++++++.|-.+..||+.... .+..+..-......++|+-....+++.+....|.+||.
T Consensus 108 f~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~ 187 (1081)
T KOG0309|consen 108 FVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDL 187 (1081)
T ss_pred EEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCceEEEec
Confidence 35689999999999999998999999999999999997654 34444445566778999875444555566778999999
Q ss_pred CCC-eeEEEEeCCCCCeEEEEEcCC-CCEEEEEECCCeEEEEECCCCeEEEE-EeCCCCCeEEEEEcCCCCEEEE--EEC
Q 001462 88 EES-KMVRTLTGHKSNCTAVEFHPF-GEFFASGCMDTNLKIWDIRKKGCIHT-YKGHTRGINTIRFTPDGRWVVS--GGF 162 (1074)
Q Consensus 88 ~tg-k~i~tl~~h~~~VtsLafSPd-g~~LaSgS~DGsI~IWDi~tg~~v~~-l~~h~~~VtsLafSPdG~~LaS--gs~ 162 (1074)
+.| .++..+++|...|..++|+.. ...+.+++.||+|++||......... ......+|+.-+|.|-|.-.+. .-.
T Consensus 188 r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G 267 (1081)
T KOG0309|consen 188 RKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVG 267 (1081)
T ss_pred cCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeEeccccC
Confidence 865 578888999999999999763 34578888999999999875443221 1224456777777774432221 111
Q ss_pred CCeEEEEE---------CCC-CceEEEeeecCCCeEEEEEcCC----------CcEEEEEeCCCeEEEEECCC
Q 001462 163 DNVVKVWD---------LTA-GKLLHDFKFHEGHIRSIDFHPL----------EFLLATGSADRTVKFWDLET 215 (1074)
Q Consensus 163 DGsI~VWD---------l~t-gk~v~~~~~h~g~ItsLafSPd----------g~lLaTGS~DGtI~IWDl~t 215 (1074)
+..+.+++ ..+ .+.++.|.+|...|....|-.. ...|++-+.|.++++|-+..
T Consensus 268 ~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 268 GNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred CeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence 12333333 322 3578999999988876666432 34799999999999998763
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.43 E-value=2.4e-05 Score=84.84 Aligned_cols=221 Identities=13% Similarity=0.100 Sum_probs=141.0
Q ss_pred CCeEEEEECCCC-ceEEEeeCCCCCeEEEEEcC-----CCCEEEEEEcCCeEEEEEcCCCee-EEEEeCCCCCeEEEEEc
Q 001462 37 DQKVNLWAIGKP-TALMSLCGLSSPVDSVAFDS-----AEVLVLAGASTGVIKLWDLEESKM-VRTLTGHKSNCTAVEFH 109 (1074)
Q Consensus 37 DGtV~IWDl~t~-k~l~sl~~hs~~ItsLafSp-----dg~~LatGs~DG~I~VWDl~tgk~-i~tl~~h~~~VtsLafS 109 (1074)
...|.+|++-.. +.+..+. ..+.|.| ...+|+.||..|.+.+|...+.+. .+....+...|.-+.=.
T Consensus 51 t~sv~i~~~y~N~~~iv~~y------~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~ 124 (344)
T KOG4532|consen 51 TISVPINSHYSNPKGIVEFY------TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRY 124 (344)
T ss_pred eeeeEeccccCCchhhEEee------ecccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhhhh
Confidence 345677776332 2222222 2345544 456899999999999999986543 33333344433222111
Q ss_pred CC-CCEEEEEECCCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCc--eEEEe-eecCC
Q 001462 110 PF-GEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGK--LLHDF-KFHEG 185 (1074)
Q Consensus 110 Pd-g~~LaSgS~DGsI~IWDi~tg~~v~~l~~h~~~VtsLafSPdG~~LaSgs~DGsI~VWDl~tgk--~v~~~-~~h~g 185 (1074)
-+ .--+..++.|.++++.++..+..-.......-.+.++.+++|++++++.+....|..|.+.... .+... .....
T Consensus 125 cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D 204 (344)
T KOG4532|consen 125 CDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSD 204 (344)
T ss_pred cccccceeeccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCC
Confidence 11 2235566778888888776443322222122337899999999999999999999999886532 22212 22334
Q ss_pred CeEEEEEcCCCcEEEEEeCCCeEEEEECCCCcEE-----EeeCCCCCCeEEEEEecCCC--EE-EEEECCcEEEEEecCC
Q 001462 186 HIRSIDFHPLEFLLATGSADRTVKFWDLETFELI-----GSTRPEVTGVHAITFHPDGR--TL-FSGFDDNLKVYSWEPV 257 (1074)
Q Consensus 186 ~ItsLafSPdg~lLaTGS~DGtI~IWDl~tg~~i-----~t~~~~~~~ItsIafSPDG~--~L-asGsd~~I~Vwd~~s~ 257 (1074)
.-.+..|+.....+|++..||++.|||++..... .+-..|.+.++.+.|++.|. +| ++-.-+.+.+.|++..
T Consensus 205 ~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~ 284 (344)
T KOG4532|consen 205 HGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNY 284 (344)
T ss_pred CceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccC
Confidence 4577889999999999999999999999865432 22345778899999998653 23 3334556888888877
Q ss_pred eeeecc
Q 001462 258 ICHDSV 263 (1074)
Q Consensus 258 ~~~~~l 263 (1074)
.-+..+
T Consensus 285 ~~~q~I 290 (344)
T KOG4532|consen 285 VNHQVI 290 (344)
T ss_pred ceeeEE
Confidence 655443
|
|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.43 E-value=5.1e-06 Score=101.32 Aligned_cols=180 Identities=23% Similarity=0.357 Sum_probs=140.2
Q ss_pred CCCEEEEEEcCCeEEEEEcCCCeeEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeCCCCCeEEE
Q 001462 69 AEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTI 148 (1074)
Q Consensus 69 dg~~LatGs~DG~I~VWDl~tgk~i~tl~~h~~~VtsLafSPdg~~LaSgS~DGsI~IWDi~tg~~v~~l~~h~~~VtsL 148 (1074)
++..++.|+....+..+|+.+.+..+...-....|.-|+.+ ++++.+|...|+|.+-|.++.+.++.+..|.+.|..+
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~N--nr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDf 223 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRYN--NRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDF 223 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEec--CcEEEeecccceEEeecCCcCceeeeeeccccceeee
Confidence 34567777777788899999888877776555556666654 8999999999999999999999999999999988776
Q ss_pred EEcCCCCEEEEEEC---------CCeEEEEECCCCceEEEeeecCCCeEEEEEcCC-CcEEEEEeCCCeEEEEECCC---
Q 001462 149 RFTPDGRWVVSGGF---------DNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPL-EFLLATGSADRTVKFWDLET--- 215 (1074)
Q Consensus 149 afSPdG~~LaSgs~---------DGsI~VWDl~tgk~v~~~~~h~g~ItsLafSPd-g~lLaTGS~DGtI~IWDl~t--- 215 (1074)
.. .|+.|+++|. |..|+|||++..+.+.-+..+.++ .-+.|+|. ...+++++..|...+.|..+
T Consensus 224 Dv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsN 300 (1118)
T KOG1275|consen 224 DV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSN 300 (1118)
T ss_pred ec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEecccceeeccccccCC
Confidence 65 5888998875 456899999998877666655554 45678885 46788888899999999432
Q ss_pred C-cEEEeeCCCCCCeEEEEEecCCCEEEEE-ECCcEEEEE
Q 001462 216 F-ELIGSTRPEVTGVHAITFHPDGRTLFSG-FDDNLKVYS 253 (1074)
Q Consensus 216 g-~~i~t~~~~~~~ItsIafSPDG~~LasG-sd~~I~Vwd 253 (1074)
. .-+..+......+..+.+++.|..|+.| .+|.|.+|.
T Consensus 301 P~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 301 PPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred CccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 2 1233344555669999999999999998 567799997
|
|
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.41 E-value=0.00031 Score=76.29 Aligned_cols=265 Identities=11% Similarity=0.032 Sum_probs=157.9
Q ss_pred EEEecCCCcEEEEEECCCeEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeeEEEEeCCC
Q 001462 21 ISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHK 100 (1074)
Q Consensus 21 IafSPdg~~lLaTGs~DGtV~IWDl~t~k~l~sl~~hs~~ItsLafSpdg~~LatGs~DG~I~VWDl~tgk~i~tl~~h~ 100 (1074)
+...++...+++.|+..+.+.-.|..+|....... ....|.+-+.- -|++++.|++.|.+++.+..+|...+.+....
T Consensus 16 LVV~~dskT~v~igSHs~~~~avd~~sG~~~We~i-lg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~ 93 (354)
T KOG4649|consen 16 LVVCNDSKTLVVIGSHSGIVIAVDPQSGNLIWEAI-LGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILE 93 (354)
T ss_pred EEEecCCceEEEEecCCceEEEecCCCCcEEeehh-hCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehh
Confidence 34456666899999999999999999988776543 12223322222 47789999999999999999998887776433
Q ss_pred CCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCc--eEE
Q 001462 101 SNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGK--LLH 178 (1074)
Q Consensus 101 ~~VtsLafSPdg~~LaSgS~DGsI~IWDi~tg~~v~~l~~h~~~VtsLafSPdG~~LaSgs~DGsI~VWDl~tgk--~v~ 178 (1074)
.--......+++..+..|+.|++.+..|.++..++...+....-..+-+..+-...|+++...|.+.-.....+. .+.
T Consensus 94 ~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vlavt~~~~~~~~~w 173 (354)
T KOG4649|consen 94 TVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLAVTKNPYSSTEFW 173 (354)
T ss_pred hhccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccceEEEEccCCCCcceeh
Confidence 322334556789999999999999999999999998887655555566667733345555566766665555442 222
Q ss_pred EeeecCCCeEE--EEEcCCCcEEEEEeCCCeEEEEECCCCcEEEeeCCCCCCe-----------EEEEEecCCCEEEEEE
Q 001462 179 DFKFHEGHIRS--IDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGV-----------HAITFHPDGRTLFSGF 245 (1074)
Q Consensus 179 ~~~~h~g~Its--LafSPdg~lLaTGS~DGtI~IWDl~tg~~i~t~~~~~~~I-----------tsIafSPDG~~LasGs 245 (1074)
.+. ..++|.+ ++. +..+..+.-||.+.-+| ..|+.+..+.. .++| ..+.+...+-+.+..-
T Consensus 174 ~~~-~~~PiF~splcv---~~sv~i~~VdG~l~~f~-~sG~qvwr~~t-~GpIf~~Pc~s~Ps~q~i~~~~~~Cf~~~~p 247 (354)
T KOG4649|consen 174 AAT-RFGPIFASPLCV---GSSVIITTVDGVLTSFD-ESGRQVWRPAT-KGPIFMEPCESRPSCQQISLENENCFCAPLP 247 (354)
T ss_pred hhh-cCCccccCceec---cceEEEEEeccEEEEEc-CCCcEEEeecC-CCceecccccCCCcceEEEEecCCeEEEecc
Confidence 221 1233322 111 34455556677766666 44555443322 1221 2333333333333332
Q ss_pred CCcEEEEEecCCeeeeccccC---CceeeEEEecCCCEEEEEECCCeEEEEE
Q 001462 246 DDNLKVYSWEPVICHDSVDMG---WSTLGDLCINDGKLLGCSFYRNSVGIWV 294 (1074)
Q Consensus 246 d~~I~Vwd~~s~~~~~~l~~~---~s~~~~l~spDGklLAsgs~DGsV~IWD 294 (1074)
..+-.+|..+.+.....+... +.... .-....++|..++.||.+.|-.
T Consensus 248 ~~ghL~w~~~~g~t~~vy~~p~l~F~~h~-~~~S~~~ll~~~s~dgkv~il~ 298 (354)
T KOG4649|consen 248 IAGHLLWATQSGTTLHVYLSPKLRFDLHS-PGISYPKLLRRSSGDGKVMILM 298 (354)
T ss_pred ccceEEEEecCCcEEEEEeCcccceeccC-CCCcchhhhhhhcCCCcEEEEE
Confidence 233456776665433332211 00000 0012356788888899888874
|
|
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.40 E-value=1.8e-07 Score=112.55 Aligned_cols=220 Identities=17% Similarity=0.232 Sum_probs=162.5
Q ss_pred CceEEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeeEEEEeCCCCCeEEEEEcCCCCEEEEEECCC--eEE
Q 001462 48 PTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDT--NLK 125 (1074)
Q Consensus 48 ~k~l~sl~~hs~~ItsLafSpdg~~LatGs~DG~I~VWDl~tgk~i~tl~~h~~~VtsLafSPdg~~LaSgS~DG--sI~ 125 (1074)
.+....+..|....+|++|+.+.++|++|+..|.|++|++.+|.......+|+..|+.+.-+.+|..+++.+.-. -..
T Consensus 1091 Fr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Plsa 1170 (1516)
T KOG1832|consen 1091 FRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSA 1170 (1516)
T ss_pred cccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHH
Confidence 344566778889999999999999999999999999999999999999999999999999999999777664432 478
Q ss_pred EEECCC-CeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEee----ecCCCeEEEEEcCCCcEEE
Q 001462 126 IWDIRK-KGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFK----FHEGHIRSIDFHPLEFLLA 200 (1074)
Q Consensus 126 IWDi~t-g~~v~~l~~h~~~VtsLafSPdG~~LaSgs~DGsI~VWDl~tgk~v~~~~----~h~g~ItsLafSPdg~lLa 200 (1074)
+|++.. +...+.|. .-.++.|+..-..-+.|.......+||+.++..+.++- +....-.+..|+|+..+++
T Consensus 1171 LW~~~s~~~~~Hsf~----ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl 1246 (1516)
T KOG1832|consen 1171 LWDASSTGGPRHSFD----EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL 1246 (1516)
T ss_pred HhccccccCcccccc----ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe
Confidence 899754 44455554 34678888765555666666778999999998765532 1222346788999988776
Q ss_pred EEeCCCeEEEEECCCCcEEEeeCCCCCCeEEEEEecCCCEEEEEECCcEEEEEecCCeeeeccccCCceeeEEEecCCCE
Q 001462 201 TGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGFDDNLKVYSWEPVICHDSVDMGWSTLGDLCINDGKL 280 (1074)
Q Consensus 201 TGS~DGtI~IWDl~tg~~i~t~~~~~~~ItsIafSPDG~~LasGsd~~I~Vwd~~s~~~~~~l~~~~s~~~~l~spDGkl 280 (1074)
- || .+||++..+.++.|..... ...-.|+|.|..++.-+ .|||+++....+.++.- ..+...|.+.|..
T Consensus 1247 n---dG--vLWDvR~~~aIh~FD~ft~-~~~G~FHP~g~eVIINS----EIwD~RTF~lLh~VP~L-dqc~VtFNstG~V 1315 (1516)
T KOG1832|consen 1247 N---DG--VLWDVRIPEAIHRFDQFTD-YGGGGFHPSGNEVIINS----EIWDMRTFKLLHSVPSL-DQCAVTFNSTGDV 1315 (1516)
T ss_pred e---Cc--eeeeeccHHHHhhhhhhee-cccccccCCCceEEeec----hhhhhHHHHHHhcCccc-cceEEEeccCccc
Confidence 3 56 5899998877777765432 22346999999888764 59999988776655432 3344445455554
Q ss_pred EE
Q 001462 281 LG 282 (1074)
Q Consensus 281 LA 282 (1074)
+.
T Consensus 1316 mY 1317 (1516)
T KOG1832|consen 1316 MY 1317 (1516)
T ss_pred hh
Confidence 43
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.8e-06 Score=95.98 Aligned_cols=169 Identities=15% Similarity=0.269 Sum_probs=126.2
Q ss_pred EEEEcCC--CCEEEEEEcCCeEEEEEcCCCeeEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC-----eEE
Q 001462 63 SVAFDSA--EVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKK-----GCI 135 (1074)
Q Consensus 63 sLafSpd--g~~LatGs~DG~I~VWDl~tgk~i~tl~~h~~~VtsLafSPdg~~LaSgS~DGsI~IWDi~tg-----~~v 135 (1074)
.++|+-+ |-.+ +.+.+-.|.+-|+++|.. +.|. ....|.++.|+..++.++.|+..|.|..+|++.+ .+.
T Consensus 216 ~CawSlni~gyhf-s~G~sqqv~L~nvetg~~-qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a 292 (425)
T KOG2695|consen 216 SCAWSLNIMGYHF-SVGLSQQVLLTNVETGHQ-QSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCA 292 (425)
T ss_pred hhhhhhccceeee-cccccceeEEEEeecccc-cccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcce
Confidence 3466532 3343 334456688889887753 3333 6778999999998999999999999999999864 345
Q ss_pred EEEeCCCCCeEEEEEcC-CCCEEEEEECCCeEEEEECCCCce---EEEeeecCCCeEE--EEEcCCCcEEEEEeCCCeEE
Q 001462 136 HTYKGHTRGINTIRFTP-DGRWVVSGGFDNVVKVWDLTAGKL---LHDFKFHEGHIRS--IDFHPLEFLLATGSADRTVK 209 (1074)
Q Consensus 136 ~~l~~h~~~VtsLafSP-dG~~LaSgs~DGsI~VWDl~tgk~---v~~~~~h~g~Its--LafSPdg~lLaTGS~DGtI~ 209 (1074)
+.+. |...|+++.... ++.+|.+.+.+|.|++||++.-+. +.++.+|-..-.- +..++....+++++.|...+
T Consensus 293 ~rly-h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytR 371 (425)
T KOG2695|consen 293 QRLY-HDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTR 371 (425)
T ss_pred EEEE-cCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEE
Confidence 5555 888899998877 788999999999999999988776 8888887544332 33445567788899999999
Q ss_pred EEECCCCcEEEeeCCCCC----CeEEEEEe
Q 001462 210 FWDLETFELIGSTRPEVT----GVHAITFH 235 (1074)
Q Consensus 210 IWDl~tg~~i~t~~~~~~----~ItsIafS 235 (1074)
||.++.+..+.++..... .+.+++|.
T Consensus 372 iWsl~~ghLl~tipf~~s~~e~d~~sv~~~ 401 (425)
T KOG2695|consen 372 IWSLDSGHLLCTIPFPYSASEVDIPSVAFD 401 (425)
T ss_pred EEecccCceeeccCCCCccccccccceehh
Confidence 999999999887754332 34555554
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=98.36 E-value=0.00018 Score=87.36 Aligned_cols=260 Identities=11% Similarity=0.100 Sum_probs=160.9
Q ss_pred EEEEEECCCeEEEEECCCCceEEEeeCCCC-------------CeE-------EEEE--------c-----CCCCEEEEE
Q 001462 30 FLITGGDDQKVNLWAIGKPTALMSLCGLSS-------------PVD-------SVAF--------D-----SAEVLVLAG 76 (1074)
Q Consensus 30 lLaTGs~DGtV~IWDl~t~k~l~sl~~hs~-------------~It-------sLaf--------S-----pdg~~LatG 76 (1074)
.|.+|+..|.|+|+-+.+++.+..+..+.. .|. .+.| | -||+||++-
T Consensus 68 ~f~SgG~sG~~~v~G~PSmr~l~~ipvf~~~~~~G~G~~~esk~~l~~~~~~~~~~~gD~HHp~~s~t~g~ydGr~~fin 147 (635)
T PRK02888 68 GFWSGGHSGEVRILGLPSMRELMRIPVFNRDSATGWGITNESKKVLGEGARGGKYLNGDTHHPHMSFTDGTYDGRYLFIN 147 (635)
T ss_pred EEeeCCccceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHhhccccCCcccCCCcCCCcccccCCccceeEEEEe
Confidence 467889999999999988877766542110 011 0111 1 156677775
Q ss_pred Ec-CCeEEEEEcCCCeeEEEEeC-CCCCeEEEE-------------------EcCCCCEEEEEE-CCCeEEEEECCCCeE
Q 001462 77 AS-TGVIKLWDLEESKMVRTLTG-HKSNCTAVE-------------------FHPFGEFFASGC-MDTNLKIWDIRKKGC 134 (1074)
Q Consensus 77 s~-DG~I~VWDl~tgk~i~tl~~-h~~~VtsLa-------------------fSPdg~~LaSgS-~DGsI~IWDi~tg~~ 134 (1074)
.. ++.|...+++..+.-+.+.- ....+..++ +.+||+.+...+ ..+.+.++|..+.+.
T Consensus 148 dk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~~~~ey~~~vSvID~etmeV 227 (635)
T PRK02888 148 DKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLDDPKKYRSLFTAVDAETMEV 227 (635)
T ss_pred cCCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCCCCCEeecccceeEEEEEEECccceE
Confidence 53 45666666665443332221 112222222 334555443222 235677778887777
Q ss_pred EEEEeCCCCCeEEEEEcCCCCEEEEEECC----CeEEEEECCCCceEEEeeecCCCeEEEEEcCCCcEEEEEeCCCeEEE
Q 001462 135 IHTYKGHTRGINTIRFTPDGRWVVSGGFD----NVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKF 210 (1074)
Q Consensus 135 v~~l~~h~~~VtsLafSPdG~~LaSgs~D----GsI~VWDl~tgk~v~~~~~h~g~ItsLafSPdg~lLaTGS~DGtI~I 210 (1074)
..++.-. .....+.++++|+++++.+.+ ..+...+......+..|.... + -.+.++|++...+ ++.|.+
T Consensus 228 ~~qV~Vd-gnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~--i--ea~vkdGK~~~V~--gn~V~V 300 (635)
T PRK02888 228 AWQVMVD-GNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIAR--I--EEAVKAGKFKTIG--GSKVPV 300 (635)
T ss_pred EEEEEeC-CCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHH--H--HHhhhCCCEEEEC--CCEEEE
Confidence 6666533 345678999999999887632 233333332222222222100 0 1334577777663 678999
Q ss_pred EECCC----C-cEEEeeCCCCCCeEEEEEecCCCEEEEE--ECCcEEEEEecCCe------------eeeccccCCceee
Q 001462 211 WDLET----F-ELIGSTRPEVTGVHAITFHPDGRTLFSG--FDDNLKVYSWEPVI------------CHDSVDMGWSTLG 271 (1074)
Q Consensus 211 WDl~t----g-~~i~t~~~~~~~ItsIafSPDG~~LasG--sd~~I~Vwd~~s~~------------~~~~l~~~~s~~~ 271 (1074)
+|..+ + +.+..+. -......+.++|||++++++ .++.+.|+|+.... .......+..++.
T Consensus 301 ID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGPLH 379 (635)
T PRK02888 301 VDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGPLH 379 (635)
T ss_pred EECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCCcce
Confidence 99998 3 4444443 34556899999999999986 46779999998754 3555667778888
Q ss_pred EEEecCCCEEEEEECCCeEEEEEcCC
Q 001462 272 DLCINDGKLLGCSFYRNSVGIWVADV 297 (1074)
Q Consensus 272 ~l~spDGklLAsgs~DGsV~IWDld~ 297 (1074)
..|..+|+...+-.-|..|..|+++.
T Consensus 380 TaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 380 TAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred EEECCCCCEEEeEeecceeEEEehHH
Confidence 88888998888888999999999864
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=98.33 E-value=0.00012 Score=92.43 Aligned_cols=235 Identities=10% Similarity=0.156 Sum_probs=151.0
Q ss_pred CCEEEEEEecCCCcEEEEEECCCeEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcC----C--
Q 001462 16 ANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLE----E-- 89 (1074)
Q Consensus 16 ~~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~k~l~sl~~hs~~ItsLafSpdg~~LatGs~DG~I~VWDl~----t-- 89 (1074)
+.|.++.|.-++ .-++.+..+|.|.+-|..+... .....-..+|.+++|+||+..++..+..+++.+.+-. .
T Consensus 69 ~~i~s~~fl~d~-~~i~v~~~~G~iilvd~et~~~-eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~ 146 (1265)
T KOG1920|consen 69 DEIVSVQFLADT-NSICVITALGDIILVDPETLEL-EIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEK 146 (1265)
T ss_pred cceEEEEEeccc-ceEEEEecCCcEEEEcccccce-eeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhcc
Confidence 579999999888 5677788889999988765432 2233456889999999999999999888877766431 0
Q ss_pred -----------------CeeEEEEeCC---------------------CCCeEEEEEcCCCCEEEEEE----CC-CeEEE
Q 001462 90 -----------------SKMVRTLTGH---------------------KSNCTAVEFHPFGEFFASGC----MD-TNLKI 126 (1074)
Q Consensus 90 -----------------gk~i~tl~~h---------------------~~~VtsLafSPdg~~LaSgS----~D-GsI~I 126 (1074)
|+.-..+.+. .+.-..|.|--||++|++.. .+ ..|++
T Consensus 147 ~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV 226 (1265)
T KOG1920|consen 147 PLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRV 226 (1265)
T ss_pred ccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEE
Confidence 1111112111 11223589999999999842 23 78999
Q ss_pred EECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEE---CCCeEEEEECCC---CceEEEeeecCCCeEEEEEcCCCcEEE
Q 001462 127 WDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGG---FDNVVKVWDLTA---GKLLHDFKFHEGHIRSIDFHPLEFLLA 200 (1074)
Q Consensus 127 WDi~tg~~v~~l~~h~~~VtsLafSPdG~~LaSgs---~DGsI~VWDl~t---gk~v~~~~~h~g~ItsLafSPdg~lLa 200 (1074)
||-+ |..-..-....+.-.+++|-|.|.++++-. .|+.|.+|.-.. |.....+......|..++|+.++.+|+
T Consensus 227 ~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sdiLA 305 (1265)
T KOG1920|consen 227 YDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSDILA 305 (1265)
T ss_pred eccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecCCCCcee
Confidence 9965 543333333334456899999999888754 355788887432 222222333344589999999999999
Q ss_pred E---EeCCCeEEEEECCCCcEEEe--eCCCCCCeEEEEEecCC--CEEEEEECCcEEEEEec
Q 001462 201 T---GSADRTVKFWDLETFELIGS--TRPEVTGVHAITFHPDG--RTLFSGFDDNLKVYSWE 255 (1074)
Q Consensus 201 T---GS~DGtI~IWDl~tg~~i~t--~~~~~~~ItsIafSPDG--~~LasGsd~~I~Vwd~~ 255 (1074)
+ ......|++|-+.+....-+ +..... --+.|+|.. +..+.+.+|...+++|.
T Consensus 306 v~~~~~e~~~v~lwt~~NyhWYLKq~l~~~~~--~~~~W~p~~~~~L~v~~~sG~~~v~~~~ 365 (1265)
T KOG1920|consen 306 VVTSNLENSLVQLWTTGNYHWYLKQELQFSQK--ALLMWDPVTEKTLHVLRESGQRLVRDFA 365 (1265)
T ss_pred eeecccccceEEEEEecCeEEEEEEEEecccc--ccccccCCCceeEEEEecCCcEEEEEEE
Confidence 8 44555699999988654322 221211 227888843 33334445555555553
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.6e-05 Score=96.50 Aligned_cols=181 Identities=18% Similarity=0.241 Sum_probs=132.9
Q ss_pred CCCEEEEEEecCCCcEEEEEECCCeEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeeEE
Q 001462 15 SANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVR 94 (1074)
Q Consensus 15 s~~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~k~l~sl~~hs~~ItsLafSpdg~~LatGs~DG~I~VWDl~tgk~i~ 94 (1074)
.+.+.|++++. ++|+.|..+|.|++++.... . .....|... .-+|.++++|+.||.|.|..+-+.+...
T Consensus 39 ~D~is~~av~~---~~~~~GtH~g~v~~~~~~~~-~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~ 107 (846)
T KOG2066|consen 39 NDAISCCAVHD---KFFALGTHRGAVYLTTCQGN-P-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEIT 107 (846)
T ss_pred hhHHHHHHhhc---ceeeeccccceEEEEecCCc-c-ccccccccc------ccCCceEEEecCCCcEEEeeccCCccce
Confidence 35677888875 57999999999999997432 2 333334333 5689999999999999999998888777
Q ss_pred EEeCCCCCeEEEEEcCC-----CCEEEEEECCCeEEEEECC---CCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeE
Q 001462 95 TLTGHKSNCTAVEFHPF-----GEFFASGCMDTNLKIWDIR---KKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVV 166 (1074)
Q Consensus 95 tl~~h~~~VtsLafSPd-----g~~LaSgS~DGsI~IWDi~---tg~~v~~l~~h~~~VtsLafSPdG~~LaSgs~DGsI 166 (1074)
.+. ...++.+++++|+ .+.|++||..| +.++.-+ ....+ .+....++|.++.|. |+++|-++.+| |
T Consensus 108 ~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v-~l~~~eG~I~~i~W~--g~lIAWand~G-v 181 (846)
T KOG2066|consen 108 QYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV-VLSEGEGPIHSIKWR--GNLIAWANDDG-V 181 (846)
T ss_pred eEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccce-eeecCccceEEEEec--CcEEEEecCCC-c
Confidence 765 6788999999997 46799998888 8777532 11122 344567889999996 77888887666 8
Q ss_pred EEEECCCCceEEEeeecCCC------eEEEEEcCCCcEEEEEeCCCeEEEEECC
Q 001462 167 KVWDLTAGKLLHDFKFHEGH------IRSIDFHPLEFLLATGSADRTVKFWDLE 214 (1074)
Q Consensus 167 ~VWDl~tgk~v~~~~~h~g~------ItsLafSPdg~lLaTGS~DGtI~IWDl~ 214 (1074)
++||+.+++.+..+...... ...+.|.+... |+.| ...+|+|..++
T Consensus 182 ~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~-LVIG-W~d~v~i~~I~ 233 (846)
T KOG2066|consen 182 KVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDR-LVIG-WGDSVKICSIK 233 (846)
T ss_pred EEEeccccceeeccCCCCCCCCcccCCCceEecCCCe-EEEe-cCCeEEEEEEe
Confidence 99999998887766543332 34677876554 4444 44578888887
|
|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.32 E-value=8.6e-06 Score=99.40 Aligned_cols=180 Identities=16% Similarity=0.217 Sum_probs=139.0
Q ss_pred cEEEEEECCCeEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeeEEEEeCCCCCeEEEEE
Q 001462 29 RFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEF 108 (1074)
Q Consensus 29 ~lLaTGs~DGtV~IWDl~t~k~l~sl~~hs~~ItsLafSpdg~~LatGs~DG~I~VWDl~tgk~i~tl~~h~~~VtsLaf 108 (1074)
..++.|+....+..+|+.+.+......-....|.-+.. +++++.+|...|.|.+-|..+.+.++++..|.+.|.++..
T Consensus 148 ~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv 225 (1118)
T KOG1275|consen 148 STLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDV 225 (1118)
T ss_pred cceeecchhhheeeeecccceeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcCceeeeeeccccceeeeec
Confidence 44667777777888888887777666555555655554 6889999999999999999999999999999999988777
Q ss_pred cCCCCEEEEEEC---------CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCC-CCEEEEEECCCeEEEEECC---CC-
Q 001462 109 HPFGEFFASGCM---------DTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPD-GRWVVSGGFDNVVKVWDLT---AG- 174 (1074)
Q Consensus 109 SPdg~~LaSgS~---------DGsI~IWDi~tg~~v~~l~~h~~~VtsLafSPd-G~~LaSgs~DGsI~VWDl~---tg- 174 (1074)
. |+.|+++|. |..|+|||++..+.+.-+.-+.++ .-+.|+|. ...+++++..|...+.|.. ..
T Consensus 226 ~--GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~ 302 (1118)
T KOG1275|consen 226 Q--GNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPP 302 (1118)
T ss_pred c--CCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEecccceeeccccccCCCc
Confidence 6 899998875 455899999987766665544443 56778883 4568888889999999943 22
Q ss_pred ceEEEeeecCCCeEEEEEcCCCcEEEEEeCCCeEEEEEC
Q 001462 175 KLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDL 213 (1074)
Q Consensus 175 k~v~~~~~h~g~ItsLafSPdg~lLaTGS~DGtI~IWDl 213 (1074)
.-+..+......+..+++++++..|+.|..+|.|.+|.-
T Consensus 303 ~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 303 AGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWAD 341 (1118)
T ss_pred cceeEEccCCCcceeEEecCCCceEEEecccCcEeeecC
Confidence 123333334455999999999999999999999999973
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.29 E-value=3.7e-05 Score=93.00 Aligned_cols=108 Identities=10% Similarity=0.151 Sum_probs=85.5
Q ss_pred EEEEEEecCCCcEEEEEEC----CCeEEEEECCCCceE--EEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCCe
Q 001462 18 VNCISIGKKACRFLITGGD----DQKVNLWAIGKPTAL--MSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESK 91 (1074)
Q Consensus 18 Vt~IafSPdg~~lLaTGs~----DGtV~IWDl~t~k~l--~sl~~hs~~ItsLafSpdg~~LatGs~DG~I~VWDl~tgk 91 (1074)
-+-+.|+|.. .+|++++. .|.|.||- .+|++- ..+.- .+++++|+|..-.|+.|-.-|.+.+|...+.+
T Consensus 18 sti~SWHPse-PlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~P~---hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e 92 (1416)
T KOG3617|consen 18 STISSWHPSE-PLFAVASFSPERGGSVTIFA-DTGEPQRDVTYPV---HATSLCWHPEEFVLAQGWEMGVSDVQKTNTTE 92 (1416)
T ss_pred ccccccCCCC-ceeEEEEecCCCCceEEEEe-cCCCCCcccccce---ehhhhccChHHHHHhhccccceeEEEecCCce
Confidence 3445799998 67777754 58898884 344422 22222 34679999999999999999999999988777
Q ss_pred eEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC
Q 001462 92 MVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIR 130 (1074)
Q Consensus 92 ~i~tl~~h~~~VtsLafSPdg~~LaSgS~DGsI~IWDi~ 130 (1074)
.......|..+|..+.|+++|..++++..-|.|.+|...
T Consensus 93 ~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 93 THTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred eeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 766667899999999999999999999999999999765
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=98.28 E-value=5e-06 Score=89.70 Aligned_cols=145 Identities=19% Similarity=0.253 Sum_probs=94.9
Q ss_pred cEEEEEECCCeEEEEECCCCceE-EEeeCCCCCeEEEEEcCCCCEEEEEEc-----CCeEEEEEcCCCeeEEEEeCCCCC
Q 001462 29 RFLITGGDDQKVNLWAIGKPTAL-MSLCGLSSPVDSVAFDSAEVLVLAGAS-----TGVIKLWDLEESKMVRTLTGHKSN 102 (1074)
Q Consensus 29 ~lLaTGs~DGtV~IWDl~t~k~l-~sl~~hs~~ItsLafSpdg~~LatGs~-----DG~I~VWDl~tgk~i~tl~~h~~~ 102 (1074)
.-+++++.||.+.+++......+ ..+......-.+.++...++.+.++.- -+..++|+++..+....-......
T Consensus 102 t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~ 181 (319)
T KOG4714|consen 102 NRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDA 181 (319)
T ss_pred CceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeeccccccccccccccccc
Confidence 45899999999999987542111 111111111122333344555554332 234566666543322211222334
Q ss_pred eEEEEEcCCCC-EEEEEECCCeEEEEECCCCeE-EEEEeCCCCCeEEEEEcC-CCCEEEEEECCCeEEEEECCC
Q 001462 103 CTAVEFHPFGE-FFASGCMDTNLKIWDIRKKGC-IHTYKGHTRGINTIRFTP-DGRWVVSGGFDNVVKVWDLTA 173 (1074)
Q Consensus 103 VtsLafSPdg~-~LaSgS~DGsI~IWDi~tg~~-v~~l~~h~~~VtsLafSP-dG~~LaSgs~DGsI~VWDl~t 173 (1074)
|.+++-+|..+ .+++|+.||.+-+||.+.... ...++.|..+++.+-|+| ++..|+++++||.+..||..+
T Consensus 182 v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 182 VTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred chhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 89999999654 667778899999999988753 345678999999999999 677899999999999999764
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=98.28 E-value=0.00014 Score=80.05 Aligned_cols=195 Identities=13% Similarity=0.204 Sum_probs=117.4
Q ss_pred EEEEEecCCCcEEEEEECCCeEEEEECCCCceEEEee-------CCCCCeEEEEEcCCC------CEEEEEEcCCeEEEE
Q 001462 19 NCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLC-------GLSSPVDSVAFDSAE------VLVLAGASTGVIKLW 85 (1074)
Q Consensus 19 t~IafSPdg~~lLaTGs~DGtV~IWDl~t~k~l~sl~-------~hs~~ItsLafSpdg------~~LatGs~DG~I~VW 85 (1074)
.-++||||+ .+||.+...|+|++||+... .+..+. .....|..+.|-... ..|++-..+|.++-|
T Consensus 47 Rkl~WSpD~-tlLa~a~S~G~i~vfdl~g~-~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy 124 (282)
T PF15492_consen 47 RKLAWSPDC-TLLAYAESTGTIRVFDLMGS-ELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSY 124 (282)
T ss_pred eEEEECCCC-cEEEEEcCCCeEEEEecccc-eeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeE
Confidence 568999999 89999999999999998653 333332 123567777775422 246666778888877
Q ss_pred EcCC-----CeeEEEEe---CCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCE-
Q 001462 86 DLEE-----SKMVRTLT---GHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRW- 156 (1074)
Q Consensus 86 Dl~t-----gk~i~tl~---~h~~~VtsLafSPdg~~LaSgS~DGsI~IWDi~tg~~v~~l~~h~~~VtsLafSPdG~~- 156 (1074)
-+.. .+..+.+. .+...|.++.|+|..+.|++|+.... ..+. .++...++++-....+..+
T Consensus 125 ~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~------~~~~----s~a~~~GLtaWRiL~~~Pyy 194 (282)
T PF15492_consen 125 LVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQN------QDGM----SKASSCGLTAWRILSDSPYY 194 (282)
T ss_pred EEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCC------CCcc----ccccccCceEEEEcCCCCcE
Confidence 6532 23333333 24678999999999998888765321 0000 0011112222222111111
Q ss_pred -EEEEECCC------eEEEEECCCCceEEEeeecCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCCcEEEeeCCC
Q 001462 157 -VVSGGFDN------VVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPE 225 (1074)
Q Consensus 157 -LaSgs~DG------sI~VWDl~tgk~v~~~~~h~g~ItsLafSPdg~lLaTGS~DGtI~IWDl~tg~~i~t~~~~ 225 (1074)
.++...|+ ...+|.+-+.+...........|..|..+|||.+|++.+.+|.|.+|++.+.........+
T Consensus 195 k~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~~ 270 (282)
T PF15492_consen 195 KQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQD 270 (282)
T ss_pred EEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccchh
Confidence 11111121 1233333332222211224567999999999999999999999999999987776655443
|
|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.27 E-value=2.1e-05 Score=89.27 Aligned_cols=244 Identities=13% Similarity=0.145 Sum_probs=151.9
Q ss_pred EEEEecCCCCEEEEEEecCCCcEEEEEECCCeEEEEECCCCceEEEeeCCCCCeEEEEEcCCC-CEEEEEEcCCeEEEEE
Q 001462 8 LQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAE-VLVLAGASTGVIKLWD 86 (1074)
Q Consensus 8 v~~L~gHs~~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~k~l~sl~~hs~~ItsLafSpdg-~~LatGs~DG~I~VWD 86 (1074)
.+-+.+|...|..++|+|....++..++.+..|+|.|+.+......+..+ ..+++++|.-|. ++|++|...|.|.|||
T Consensus 186 sq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD 264 (463)
T KOG1645|consen 186 SQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYD 264 (463)
T ss_pred hhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEE
Confidence 34567788899999999998668999999999999999999888888877 889999999765 6788888899999999
Q ss_pred cCCCe-eEEEEeC--CCCCeEEEEEcC------CCCEEEEEECCCeEEEEECCCC--e--EEEEEeCCCCCeEEEEEcCC
Q 001462 87 LEESK-MVRTLTG--HKSNCTAVEFHP------FGEFFASGCMDTNLKIWDIRKK--G--CIHTYKGHTRGINTIRFTPD 153 (1074)
Q Consensus 87 l~tgk-~i~tl~~--h~~~VtsLafSP------dg~~LaSgS~DGsI~IWDi~tg--~--~v~~l~~h~~~VtsLafSPd 153 (1074)
++..+ .+..+.. ...+|..++.-+ .|.+++.+.. .+.+|.+.-. . ++..+. ..+.+.++.+++-
T Consensus 265 ~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt--~l~f~ei~~s~~~~p~vlele-~pG~cismqy~~~ 341 (463)
T KOG1645|consen 265 MRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALT--VLQFYEIVFSAECLPCVLELE-PPGICISMQYHGV 341 (463)
T ss_pred ccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeeh--hhhhhhhhccccCCCcccccC-CCcceeeeeecCc
Confidence 98543 2222211 223444443322 2344444332 2666765421 1 222222 3445556666664
Q ss_pred CCEEEEEECCC--------eEEEEECCCCceEEEee-ec-CCCe------EEEEEcCCCcEEE-EEeCCCeEEEEECCCC
Q 001462 154 GRWVVSGGFDN--------VVKVWDLTAGKLLHDFK-FH-EGHI------RSIDFHPLEFLLA-TGSADRTVKFWDLETF 216 (1074)
Q Consensus 154 G~~LaSgs~DG--------sI~VWDl~tgk~v~~~~-~h-~g~I------tsLafSPdg~lLa-TGS~DGtI~IWDl~tg 216 (1074)
.++++...... .+.--|..+|..+...+ .+ .+.- ..+.-.++.++++ +|...+.+.+||..++
T Consensus 342 snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s~ 421 (463)
T KOG1645|consen 342 SNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHSF 421 (463)
T ss_pred cceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEeccchh
Confidence 45554433221 11122333444443322 11 1110 1111123444444 4445578999999999
Q ss_pred cEEEeeCCCCCCeEEEEEec--CCCEEEEEECCcEEEEEecC
Q 001462 217 ELIGSTRPEVTGVHAITFHP--DGRTLFSGFDDNLKVYSWEP 256 (1074)
Q Consensus 217 ~~i~t~~~~~~~ItsIafSP--DG~~LasGsd~~I~Vwd~~s 256 (1074)
+.+..+... .+|.+++... .+.||++-.++.+.||.++.
T Consensus 422 evvQ~l~~~-epv~Dicp~~~n~~syLa~LTd~~v~Iyk~es 462 (463)
T KOG1645|consen 422 EVVQTLALS-EPVLDICPNDTNGSSYLALLTDDRVHIYKNES 462 (463)
T ss_pred heeeecccC-cceeecceeecCCcchhhheecceEEEEecCC
Confidence 998887655 6777776554 35688888899999998864
|
|
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.00075 Score=73.39 Aligned_cols=172 Identities=12% Similarity=0.056 Sum_probs=109.4
Q ss_pred cEEEEEECCCeEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeeEEEEeCCCCCeEEEEE
Q 001462 29 RFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEF 108 (1074)
Q Consensus 29 ~lLaTGs~DGtV~IWDl~t~k~l~sl~~hs~~ItsLafSpdg~~LatGs~DG~I~VWDl~tgk~i~tl~~h~~~VtsLaf 108 (1074)
.+++.|+..|.+++.+..+|.....+.....--......+++..+..|+.|+..+..|..+...+...+.......+-+.
T Consensus 64 dfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i 143 (354)
T KOG4649|consen 64 DFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVI 143 (354)
T ss_pred CEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceecccee
Confidence 46889999999999999999887776543332223445678999999999999999999999888888766665556667
Q ss_pred cCCCCEEEEEECCCeEEEEECCCCe--EEEEEeCCCCCeEE--EEEcCCCCEEEEEECCCeEEEEECCCCceEEEeeecC
Q 001462 109 HPFGEFFASGCMDTNLKIWDIRKKG--CIHTYKGHTRGINT--IRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHE 184 (1074)
Q Consensus 109 SPdg~~LaSgS~DGsI~IWDi~tg~--~v~~l~~h~~~Vts--LafSPdG~~LaSgs~DGsI~VWDl~tgk~v~~~~~h~ 184 (1074)
.+-...|+.+...|.|.--....+. .+.... ...++.. ++. +..+..+.-||.+.-+| ..|+.++.+. ..
T Consensus 144 ~~g~~sly~a~t~G~vlavt~~~~~~~~~w~~~-~~~PiF~splcv---~~sv~i~~VdG~l~~f~-~sG~qvwr~~-t~ 217 (354)
T KOG4649|consen 144 APGDGSLYAAITAGAVLAVTKNPYSSTEFWAAT-RFGPIFASPLCV---GSSVIITTVDGVLTSFD-ESGRQVWRPA-TK 217 (354)
T ss_pred cCCCceEEEEeccceEEEEccCCCCcceehhhh-cCCccccCceec---cceEEEEEeccEEEEEc-CCCcEEEeec-CC
Confidence 7734445555566766666555442 222211 1122211 122 34566677788888888 6777777655 34
Q ss_pred CCeEEE-EEc-CCCcEEEEEeCCC
Q 001462 185 GHIRSI-DFH-PLEFLLATGSADR 206 (1074)
Q Consensus 185 g~ItsL-afS-Pdg~lLaTGS~DG 206 (1074)
++|..- +-+ |..+.|..+..+.
T Consensus 218 GpIf~~Pc~s~Ps~q~i~~~~~~C 241 (354)
T KOG4649|consen 218 GPIFMEPCESRPSCQQISLENENC 241 (354)
T ss_pred CceecccccCCCcceEEEEecCCe
Confidence 444321 112 4445555555443
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=98.24 E-value=0.00037 Score=88.13 Aligned_cols=199 Identities=16% Similarity=0.195 Sum_probs=138.9
Q ss_pred CCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeeEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC----C--
Q 001462 58 SSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIR----K-- 131 (1074)
Q Consensus 58 s~~ItsLafSpdg~~LatGs~DG~I~VWDl~tgk~i~tl~~h~~~VtsLafSPdg~~LaSgS~DGsI~IWDi~----t-- 131 (1074)
...|.++.|..++..++.+...|.|.+.|.++..... ...-...|.+++|+||++.++..+..+++.+-+-. .
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~ei-vg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~ 146 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELEI-VGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEK 146 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEcccccceee-eeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhcc
Confidence 3589999999999999999999999999887764322 22346789999999999999999888877765421 0
Q ss_pred -----------------CeEEEEEeCC---------------------CCCeEEEEEcCCCCEEEEEE----CC-CeEEE
Q 001462 132 -----------------KGCIHTYKGH---------------------TRGINTIRFTPDGRWVVSGG----FD-NVVKV 168 (1074)
Q Consensus 132 -----------------g~~v~~l~~h---------------------~~~VtsLafSPdG~~LaSgs----~D-GsI~V 168 (1074)
|+....+.+. .+.=..++|--||.++++.. .+ ..|++
T Consensus 147 ~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV 226 (1265)
T KOG1920|consen 147 PLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRV 226 (1265)
T ss_pred ccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEE
Confidence 1111112110 11123589999999998843 23 68999
Q ss_pred EECCCCceEEEeeecCCCeEEEEEcCCCcEEEEEe---CCCeEEEEECCC---CcEEEeeCCCCCCeEEEEEecCCCEEE
Q 001462 169 WDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGS---ADRTVKFWDLET---FELIGSTRPEVTGVHAITFHPDGRTLF 242 (1074)
Q Consensus 169 WDl~tgk~v~~~~~h~g~ItsLafSPdg~lLaTGS---~DGtI~IWDl~t---g~~i~t~~~~~~~ItsIafSPDG~~La 242 (1074)
||.. |.+-..-....+--.+++|-|.|.++++-. .|+.|.+|.-+. |+....+......+..++|+.++..|+
T Consensus 227 ~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sdiLA 305 (1265)
T KOG1920|consen 227 YDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSDILA 305 (1265)
T ss_pred eccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecCCCCcee
Confidence 9976 655444444455567899999999988864 456788987553 223333334444589999999999999
Q ss_pred E---EECCc-EEEEEecCCe
Q 001462 243 S---GFDDN-LKVYSWEPVI 258 (1074)
Q Consensus 243 s---Gsd~~-I~Vwd~~s~~ 258 (1074)
+ ...+. |++|.+.+..
T Consensus 306 v~~~~~e~~~v~lwt~~Nyh 325 (1265)
T KOG1920|consen 306 VVTSNLENSLVQLWTTGNYH 325 (1265)
T ss_pred eeecccccceEEEEEecCeE
Confidence 8 33344 8999877643
|
|
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=98.23 E-value=0.0027 Score=77.62 Aligned_cols=188 Identities=13% Similarity=0.085 Sum_probs=120.0
Q ss_pred EEEEEECCCeEEEEECCCCceEEEeeCCC-CCeE---E-------EEEcCCCCEEEEEEcCCeEEEEEcCCCeeEEEEeC
Q 001462 30 FLITGGDDQKVNLWAIGKPTALMSLCGLS-SPVD---S-------VAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTG 98 (1074)
Q Consensus 30 lLaTGs~DGtV~IWDl~t~k~l~sl~~hs-~~It---s-------LafSpdg~~LatGs~DG~I~VWDl~tgk~i~tl~~ 98 (1074)
.|++++.++.|+-+|..+++.+..+.... ..+. + +++ .+..+++++.+|.|..+|..+|+.+.....
T Consensus 71 ~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk~~W~~~~ 148 (527)
T TIGR03075 71 VMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGKVVWSKKN 148 (527)
T ss_pred EEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCCEEeeccc
Confidence 67777788899999999999888765321 1111 1 122 234677788899999999999999877652
Q ss_pred CCCC-eEEEEEcC--CCCEEEEEEC------CCeEEEEECCCCeEEEEEeCCCC--------------------------
Q 001462 99 HKSN-CTAVEFHP--FGEFFASGCM------DTNLKIWDIRKKGCIHTYKGHTR-------------------------- 143 (1074)
Q Consensus 99 h~~~-VtsLafSP--dg~~LaSgS~------DGsI~IWDi~tg~~v~~l~~h~~-------------------------- 143 (1074)
.... -..+.-.| .+..++++.. +|.|+.+|..+|+.+..+..-..
T Consensus 149 ~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~ 228 (527)
T TIGR03075 149 GDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPGDAW 228 (527)
T ss_pred ccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCCCCcc
Confidence 1110 00111111 1334555432 68999999999998877542111
Q ss_pred -----Ce-EEEEEcCCCCEEEEEECC-----C-----------eEEEEECCCCceEEEeeecCCCe---------EEEEE
Q 001462 144 -----GI-NTIRFTPDGRWVVSGGFD-----N-----------VVKVWDLTAGKLLHDFKFHEGHI---------RSIDF 192 (1074)
Q Consensus 144 -----~V-tsLafSPdG~~LaSgs~D-----G-----------sI~VWDl~tgk~v~~~~~h~g~I---------tsLaf 192 (1074)
.+ ..+++.+...+++.+..+ + .|.-.|+++|+....++.....+ .-+.+
T Consensus 229 ~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~ 308 (527)
T TIGR03075 229 KTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDL 308 (527)
T ss_pred ccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEe
Confidence 01 133566655566655421 2 68888999999998887422211 22223
Q ss_pred cCCCc---EEEEEeCCCeEEEEECCCCcEE
Q 001462 193 HPLEF---LLATGSADRTVKFWDLETFELI 219 (1074)
Q Consensus 193 SPdg~---lLaTGS~DGtI~IWDl~tg~~i 219 (1074)
..+|+ .++.+..+|.+++.|-.+|+.+
T Consensus 309 ~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 309 KKDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred ccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 34565 7889999999999999999886
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.23 E-value=2.9e-06 Score=94.38 Aligned_cols=159 Identities=22% Similarity=0.329 Sum_probs=120.2
Q ss_pred EEecCCCcEEEEEECCCeEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCC-----eeEEEE
Q 001462 22 SIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEES-----KMVRTL 96 (1074)
Q Consensus 22 afSPdg~~lLaTGs~DGtV~IWDl~t~k~l~sl~~hs~~ItsLafSpdg~~LatGs~DG~I~VWDl~tg-----k~i~tl 96 (1074)
+|+-+-.-+-++.+.+-.|-|-++.++..-. +. ....|.++.|...++++..|+.+|.|.++|++.+ .+...+
T Consensus 218 awSlni~gyhfs~G~sqqv~L~nvetg~~qs-f~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl 295 (425)
T KOG2695|consen 218 AWSLNIMGYHFSVGLSQQVLLTNVETGHQQS-FQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL 295 (425)
T ss_pred hhhhccceeeecccccceeEEEEeecccccc-cc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEE
Confidence 5554322233555666778888887764322 22 5678899999998999999999999999999854 344555
Q ss_pred eCCCCCeEEEEEcC-CCCEEEEEECCCeEEEEECCCCeE---EEEEeCCCCCeEEE--EEcCCCCEEEEEECCCeEEEEE
Q 001462 97 TGHKSNCTAVEFHP-FGEFFASGCMDTNLKIWDIRKKGC---IHTYKGHTRGINTI--RFTPDGRWVVSGGFDNVVKVWD 170 (1074)
Q Consensus 97 ~~h~~~VtsLafSP-dg~~LaSgS~DGsI~IWDi~tg~~---v~~l~~h~~~VtsL--afSPdG~~LaSgs~DGsI~VWD 170 (1074)
. |...|+++.... ++++|++.+.+|.|.+||++.-++ +..+.+|-..-.-+ -..+....+++++.|...+||.
T Consensus 296 y-h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWs 374 (425)
T KOG2695|consen 296 Y-HDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWS 374 (425)
T ss_pred E-cCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEe
Confidence 4 889999998877 788999999999999999987666 88888886533333 2345566788899999999999
Q ss_pred CCCCceEEEeeec
Q 001462 171 LTAGKLLHDFKFH 183 (1074)
Q Consensus 171 l~tgk~v~~~~~h 183 (1074)
++.|.++.++...
T Consensus 375 l~~ghLl~tipf~ 387 (425)
T KOG2695|consen 375 LDSGHLLCTIPFP 387 (425)
T ss_pred cccCceeeccCCC
Confidence 9999999887643
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.00045 Score=84.01 Aligned_cols=210 Identities=14% Similarity=0.112 Sum_probs=134.7
Q ss_pred cCCCCEEEEE-EcCCeEEEEEcCCCeeEEEEeCCCCCeEEEEEcCCCCEEEEEECC----CeEEEEECCCCeEEEEEeCC
Q 001462 67 DSAEVLVLAG-ASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMD----TNLKIWDIRKKGCIHTYKGH 141 (1074)
Q Consensus 67 Spdg~~LatG-s~DG~I~VWDl~tgk~i~tl~~h~~~VtsLafSPdg~~LaSgS~D----GsI~IWDi~tg~~v~~l~~h 141 (1074)
.+||+.+... -..+.+.++|.++.+...++.-.. ....+.++++|+++++.+.+ +.+...+......+..+...
T Consensus 201 pnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdg-npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~ 279 (635)
T PRK02888 201 PNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDG-NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIA 279 (635)
T ss_pred CCCCCEeecccceeEEEEEEECccceEEEEEEeCC-CcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchH
Confidence 3455544322 224667788888877777766433 45678999999999888642 22333332222222222110
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCeEEEEECCC-----CceEEEeeecCCCeEEEEEcCCCcEEEEEe-CCCeEEEEECCC
Q 001462 142 TRGINTIRFTPDGRWVVSGGFDNVVKVWDLTA-----GKLLHDFKFHEGHIRSIDFHPLEFLLATGS-ADRTVKFWDLET 215 (1074)
Q Consensus 142 ~~~VtsLafSPdG~~LaSgs~DGsI~VWDl~t-----gk~v~~~~~h~g~ItsLafSPdg~lLaTGS-~DGtI~IWDl~t 215 (1074)
.+ -++.++|++...+ ++.|.++|..+ .+.+..+.. ......+.++|||+++++++ .+.++.++|+.+
T Consensus 280 --~i--ea~vkdGK~~~V~--gn~V~VID~~t~~~~~~~v~~yIPV-GKsPHGV~vSPDGkylyVanklS~tVSVIDv~k 352 (635)
T PRK02888 280 --RI--EEAVKAGKFKTIG--GSKVPVVDGRKAANAGSALTRYVPV-PKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRK 352 (635)
T ss_pred --HH--HHhhhCCCEEEEC--CCEEEEEECCccccCCcceEEEEEC-CCCccceEECCCCCEEEEeCCCCCcEEEEEChh
Confidence 00 1334578876653 67899999988 345555553 44578999999999888776 478999999988
Q ss_pred CcE------------EEeeCCCCCCeEEEEEecCCCEEEEE-ECCcEEEEEecC----------CeeeeccccCCceeeE
Q 001462 216 FEL------------IGSTRPEVTGVHAITFHPDGRTLFSG-FDDNLKVYSWEP----------VICHDSVDMGWSTLGD 272 (1074)
Q Consensus 216 g~~------------i~t~~~~~~~ItsIafSPDG~~LasG-sd~~I~Vwd~~s----------~~~~~~l~~~~s~~~~ 272 (1074)
.+. ...... ..+....+|.++|....+- -|..+..|+++. ......++.++.+-..
T Consensus 353 ~k~~~~~~~~~~~~vvaevev-GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~ 431 (635)
T PRK02888 353 LDDLFDGKIKPRDAVVAEPEL-GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHN 431 (635)
T ss_pred hhhhhhccCCccceEEEeecc-CCCcceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCcccee
Confidence 553 233332 2334678899998755553 577799999876 3455666777766665
Q ss_pred EE------ecCCCEEEEEE
Q 001462 273 LC------INDGKLLGCSF 285 (1074)
Q Consensus 273 l~------spDGklLAsgs 285 (1074)
.. .+||+||++..
T Consensus 432 ~~~~g~t~~~dgk~l~~~n 450 (635)
T PRK02888 432 HASMGETKEADGKWLVSLN 450 (635)
T ss_pred eecCCCcCCCCCCEEEEcc
Confidence 55 47999998874
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.00097 Score=80.66 Aligned_cols=234 Identities=15% Similarity=0.168 Sum_probs=144.0
Q ss_pred cEEEEEECCCeEEEEECCCCceEEEeeCCCCC--eEEEEEcC--CCCEEEEEE---------cCCeEEEEEcCCCeeEEE
Q 001462 29 RFLITGGDDQKVNLWAIGKPTALMSLCGLSSP--VDSVAFDS--AEVLVLAGA---------STGVIKLWDLEESKMVRT 95 (1074)
Q Consensus 29 ~lLaTGs~DGtV~IWDl~t~k~l~sl~~hs~~--ItsLafSp--dg~~LatGs---------~DG~I~VWDl~tgk~i~t 95 (1074)
..++.++.+|.|+.+|..+++.+..+...... -..+.-+| .+..++.++ .+|.|..+|..+|+.+..
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~ 190 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWR 190 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeE
Confidence 36777888999999999999998877543221 00111111 124455553 368899999999998887
Q ss_pred EeCCCCC--------------------e-EEEEEcCCCCEEEEEECCC------------------eEEEEECCCCeEEE
Q 001462 96 LTGHKSN--------------------C-TAVEFHPFGEFFASGCMDT------------------NLKIWDIRKKGCIH 136 (1074)
Q Consensus 96 l~~h~~~--------------------V-tsLafSPdg~~LaSgS~DG------------------sI~IWDi~tg~~v~ 136 (1074)
+...... + ....+.+.+..+++++.++ .|+-+|..+|+.+.
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W 270 (488)
T cd00216 191 FYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKW 270 (488)
T ss_pred eeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEE
Confidence 7542110 1 1234444566777776665 79999999999988
Q ss_pred EEeCCCCCeE------EEEEc----CCCC---EEEEEECCCeEEEEECCCCceEEEeeecCCCeEEEEEcCCCcEEEEE-
Q 001462 137 TYKGHTRGIN------TIRFT----PDGR---WVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATG- 202 (1074)
Q Consensus 137 ~l~~h~~~Vt------sLafS----PdG~---~LaSgs~DGsI~VWDl~tgk~v~~~~~h~g~ItsLafSPdg~lLaTG- 202 (1074)
.++....... ...+. -+|. .+++++.+|.++.+|..+|+.+....... ..+...| ..++.+
T Consensus 271 ~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~---~~~~~~~--~~vyv~~ 345 (488)
T cd00216 271 FYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVE---QPMAYDP--GLVYLGA 345 (488)
T ss_pred EeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEeec---cccccCC--ceEEEcc
Confidence 8753211111 11111 1333 57778889999999999999988765321 1233444 233332
Q ss_pred -----------------eCCCeEEEEECCCCcEEEeeCCCC--------CCeEEEEEecCCCEEEEE-ECCcEEEEEecC
Q 001462 203 -----------------SADRTVKFWDLETFELIGSTRPEV--------TGVHAITFHPDGRTLFSG-FDDNLKVYSWEP 256 (1074)
Q Consensus 203 -----------------S~DGtI~IWDl~tg~~i~t~~~~~--------~~ItsIafSPDG~~LasG-sd~~I~Vwd~~s 256 (1074)
..+|.|.-+|+.+|+.+....... .+...-...-.+.+|+++ .++.++.+|.++
T Consensus 346 ~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald~~t 425 (488)
T cd00216 346 FHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFDATT 425 (488)
T ss_pred ccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEECCC
Confidence 236789999999999887765431 111110111234556664 567788888888
Q ss_pred CeeeeccccCC
Q 001462 257 VICHDSVDMGW 267 (1074)
Q Consensus 257 ~~~~~~l~~~~ 267 (1074)
+.....+....
T Consensus 426 G~~lW~~~~~~ 436 (488)
T cd00216 426 GKELWKFRTPS 436 (488)
T ss_pred CceeeEEECCC
Confidence 87766665543
|
The alignment model contains an 8-bladed beta-propeller. |
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.00079 Score=74.27 Aligned_cols=225 Identities=15% Similarity=0.246 Sum_probs=130.0
Q ss_pred EEEecCCCcEEEEEECCCeEEEEECCCC--ceEEEe---eCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeeEEE
Q 001462 21 ISIGKKACRFLITGGDDQKVNLWAIGKP--TALMSL---CGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRT 95 (1074)
Q Consensus 21 IafSPdg~~lLaTGs~DGtV~IWDl~t~--k~l~sl---~~hs~~ItsLafSpdg~~LatGs~DG~I~VWDl~tgk~i~t 95 (1074)
++.+.+| ++||.-. |..|.|-...+. ..+... +...-.=..++|+||+.+||.+...|+|.++|+.... +..
T Consensus 3 ~~~~~~G-k~lAi~q-d~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~-lf~ 79 (282)
T PF15492_consen 3 LALSSDG-KLLAILQ-DQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSE-LFV 79 (282)
T ss_pred eeecCCC-cEEEEEe-ccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccce-eEE
Confidence 5667777 6555543 556666654321 111111 2222234579999999999999999999999997543 333
Q ss_pred EeC-------CCCCeEEEEEcCCC------CEEEEEECCCeEEEEECC-----CCeEEEEEe---CCCCCeEEEEEcCCC
Q 001462 96 LTG-------HKSNCTAVEFHPFG------EFFASGCMDTNLKIWDIR-----KKGCIHTYK---GHTRGINTIRFTPDG 154 (1074)
Q Consensus 96 l~~-------h~~~VtsLafSPdg------~~LaSgS~DGsI~IWDi~-----tg~~v~~l~---~h~~~VtsLafSPdG 154 (1074)
+.. ....|..+.|.+.. ..|++-..+|.++-|-+. .....+.+. .+..+|.++.|+|..
T Consensus 80 I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h 159 (282)
T PF15492_consen 80 IPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKH 159 (282)
T ss_pred cCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCC
Confidence 322 13457777776532 135555678877777653 223344443 246689999999999
Q ss_pred CEEEEEECCCe-----------EEEEECCCCceEEEeeecCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCCcEEEeeC
Q 001462 155 RWVVSGGFDNV-----------VKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTR 223 (1074)
Q Consensus 155 ~~LaSgs~DGs-----------I~VWDl~tgk~v~~~~~h~g~ItsLafSPdg~lLaTGS~DGtI~IWDl~tg~~i~t~~ 223 (1074)
++|++||.... |..|.+-++.+. ......-....-.... +..+|.+-+........
T Consensus 160 ~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Py----------yk~v~~~~~~~~~~~~---~~~~~~~~~~~~fs~~~ 226 (282)
T PF15492_consen 160 RLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPY----------YKQVTSSEDDITASSK---RRGLLRIPSFKFFSRQG 226 (282)
T ss_pred CEEEEeccCCCCCccccccccCceEEEEcCCCCc----------EEEccccCcccccccc---ccceeeccceeeeeccc
Confidence 98888774322 222222111111 0000111111111111 12344444333333334
Q ss_pred CCCCCeEEEEEecCCCEEEEE-ECCcEEEEEecCCeeee
Q 001462 224 PEVTGVHAITFHPDGRTLFSG-FDDNLKVYSWEPVICHD 261 (1074)
Q Consensus 224 ~~~~~ItsIafSPDG~~LasG-sd~~I~Vwd~~s~~~~~ 261 (1074)
.....|..|..+|||..|++. .+|.|.+|++.......
T Consensus 227 ~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~ 265 (282)
T PF15492_consen 227 QEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQR 265 (282)
T ss_pred cCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhc
Confidence 456789999999999999985 67889999987665443
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.00015 Score=88.85 Aligned_cols=200 Identities=14% Similarity=0.139 Sum_probs=136.1
Q ss_pred EEEcCCCCEEEEEEcCCeEEEEEcCCCeeEEEEeCCCCCeEEEEEcCCC-CEEEEEECCC-----eEEEEECCCC-----
Q 001462 64 VAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFG-EFFASGCMDT-----NLKIWDIRKK----- 132 (1074)
Q Consensus 64 LafSpdg~~LatGs~DG~I~VWDl~tgk~i~tl~~h~~~VtsLafSPdg-~~LaSgS~DG-----sI~IWDi~tg----- 132 (1074)
-+|++.+..++.|+.+|.|.+++- .-+.++.++.+...+...-|.-++ .+|++.+.|+ .|+|||++.-
T Consensus 29 sc~~s~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s 107 (933)
T KOG2114|consen 29 SCCSSSTGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS 107 (933)
T ss_pred eEEcCCCceEEEeeccccEEEecc-cceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCC
Confidence 346788899999999999988873 344557777776663333444444 5777766654 5999998642
Q ss_pred -eEE--EEEeC-----CCCCeEEEEEcCCCCEEEEEECCCeEEEEECC----CCceEEEeeecCCCeEEEEEcCCCcEEE
Q 001462 133 -GCI--HTYKG-----HTRGINTIRFTPDGRWVVSGGFDNVVKVWDLT----AGKLLHDFKFHEGHIRSIDFHPLEFLLA 200 (1074)
Q Consensus 133 -~~v--~~l~~-----h~~~VtsLafSPdG~~LaSgs~DGsI~VWDl~----tgk~v~~~~~h~g~ItsLafSPdg~lLa 200 (1074)
.++ +.+.. ...++.+++.+.+-+.+|+|-.+|.|.++.-. .|....-.....++|+.+.+..++..++
T Consensus 108 P~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~l 187 (933)
T KOG2114|consen 108 PQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVL 187 (933)
T ss_pred cceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeE
Confidence 233 12222 24578899999998899999999999988521 1222222223467899999999987744
Q ss_pred EEeCCCeEEEEECCCCcE-EEeeCCCCCCeEEEEEecCCCEEEEEECCcEEEEEecCCeeeeccc
Q 001462 201 TGSADRTVKFWDLETFEL-IGSTRPEVTGVHAITFHPDGRTLFSGFDDNLKVYSWEPVICHDSVD 264 (1074)
Q Consensus 201 TGS~DGtI~IWDl~tg~~-i~t~~~~~~~ItsIafSPDG~~LasGsd~~I~Vwd~~s~~~~~~l~ 264 (1074)
....-..|.+|.+....+ ...+..+.....|..|++...-++++....+.+|+.+.......+.
T Consensus 188 Fv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~e~l~fY~sd~~~~cfaf~ 252 (933)
T KOG2114|consen 188 FVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGSEFLYFYDSDGRGPCFAFE 252 (933)
T ss_pred EEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecCceEEEEcCCCcceeeeec
Confidence 444456799999984442 4446677778888888876665888888889999987554433333
|
|
| >PF08149 BING4CT: BING4CT (NUC141) domain; InterPro: IPR012952 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.17 E-value=9.1e-07 Score=79.50 Aligned_cols=63 Identities=19% Similarity=0.213 Sum_probs=59.5
Q ss_pred CCCCceeEEEEcCCCCcceeEEEEEeccCcceEEeecCCcccceEEEeecCCCCccc-eeeecCCCCCCCCCCCCChhhh
Q 001462 310 PDQSICTEVKFNPPGSHSLEKVGIIGRSTSGFRSTSPDYETKDIKTIYVDSTGGKPV-ASQKIGPLNSPKVVPPLDSEEI 388 (1074)
Q Consensus 310 ~~~~~ItsVaFSPDGs~~Lv~vlavG~stG~~r~ivpD~et~eI~~i~iDs~gGepv-~~~~~sP~~s~k~~~~~~~~~l 388 (1074)
.....|.+++|+|..+ ++++|+..|+..+++|+ +||++ |....+||++.|||++.||+.|
T Consensus 7 ~~~~~v~~~~F~PfED-----vLgvGh~~G~sSiiVPG--------------sGe~NfDs~e~NP~et~kqRrE~EV~~L 67 (80)
T PF08149_consen 7 KPGSPVESLRFCPFED-----VLGVGHSKGFSSIIVPG--------------SGEPNFDSLEANPFETKKQRREREVRSL 67 (80)
T ss_pred CCCCeeeeeEEechHH-----eeEeeccCceeEEeccC--------------CCCCCCCcccCCcccchhHHhHHHHHHH
Confidence 4567899999999999 99999999999999999 99999 9999999999999999999999
Q ss_pred hhh
Q 001462 389 SDL 391 (1074)
Q Consensus 389 ~~~ 391 (1074)
++.
T Consensus 68 LeK 70 (80)
T PF08149_consen 68 LEK 70 (80)
T ss_pred HHh
Confidence 875
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This C-terminal domain is found in the BING4 family of nucleolar WD40 repeat proteins []. |
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.00012 Score=83.40 Aligned_cols=252 Identities=14% Similarity=0.097 Sum_probs=147.0
Q ss_pred EEEEECCCCceEEEeeCCCCCeEEEEEcCCCC-EEEEEEcCCeEEEEEcCCCeeEEEEeCCCCCeEEEEEcCCCC-EEEE
Q 001462 40 VNLWAIGKPTALMSLCGLSSPVDSVAFDSAEV-LVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGE-FFAS 117 (1074)
Q Consensus 40 V~IWDl~t~k~l~sl~~hs~~ItsLafSpdg~-~LatGs~DG~I~VWDl~tgk~i~tl~~h~~~VtsLafSPdg~-~LaS 117 (1074)
|+..+..+.+....+..+...|..++|+|..+ ++..++.+..|.|.|+++...+..+..+ ..+++++|.-+.. +|+.
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYa 253 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYA 253 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEE
Confidence 44555445555556677888999999999776 7888899999999999999888888866 8899999988764 6777
Q ss_pred EECCCeEEEEECCCCeE-EEEEeC--CCCCeEEEEEc------CCCCEEEEEECCCeEEEEECCC--Cc--eEEEeeecC
Q 001462 118 GCMDTNLKIWDIRKKGC-IHTYKG--HTRGINTIRFT------PDGRWVVSGGFDNVVKVWDLTA--GK--LLHDFKFHE 184 (1074)
Q Consensus 118 gS~DGsI~IWDi~tg~~-v~~l~~--h~~~VtsLafS------PdG~~LaSgs~DGsI~VWDl~t--gk--~v~~~~~h~ 184 (1074)
|...|.|+|||++...- +..+.+ ...+|..++.- +.|.+|+....+ +..|.+.. +. ++..+. ..
T Consensus 254 Gl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele-~p 330 (463)
T KOG1645|consen 254 GLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELE-PP 330 (463)
T ss_pred eccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccC-CC
Confidence 77899999999986432 222211 12334444332 234445544433 44565432 22 222222 24
Q ss_pred CCeEEEEEcCCCcE-EEEEeCCC------eEE-EEECCCCcEEEeeCCCC-CC-------eEEEEEecCCCEEEEE--EC
Q 001462 185 GHIRSIDFHPLEFL-LATGSADR------TVK-FWDLETFELIGSTRPEV-TG-------VHAITFHPDGRTLFSG--FD 246 (1074)
Q Consensus 185 g~ItsLafSPdg~l-LaTGS~DG------tI~-IWDl~tg~~i~t~~~~~-~~-------ItsIafSPDG~~LasG--sd 246 (1074)
+.+.++.+++..+. |++.-.+. .|- -.|...|..+....... +. -..+.-.++..+++.- ..
T Consensus 331 G~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~t 410 (463)
T KOG1645|consen 331 GICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDST 410 (463)
T ss_pred cceeeeeecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCc
Confidence 56667777775444 34332221 011 11222333332221111 10 1122223455666653 33
Q ss_pred CcEEEEEecCCeeeeccccCCceeeEEEe--cCCCEEEEEECCCeEEEEEcC
Q 001462 247 DNLKVYSWEPVICHDSVDMGWSTLGDLCI--NDGKLLGCSFYRNSVGIWVAD 296 (1074)
Q Consensus 247 ~~I~Vwd~~s~~~~~~l~~~~s~~~~l~s--pDGklLAsgs~DGsV~IWDld 296 (1074)
+.+.+||.........+............ ..+.||+.- .|..++||..+
T Consensus 411 n~lil~D~~s~evvQ~l~~~epv~Dicp~~~n~~syLa~L-Td~~v~Iyk~e 461 (463)
T KOG1645|consen 411 NELILQDPHSFEVVQTLALSEPVLDICPNDTNGSSYLALL-TDDRVHIYKNE 461 (463)
T ss_pred ceeEEeccchhheeeecccCcceeecceeecCCcchhhhe-ecceEEEEecC
Confidence 45999999988888777776333322222 234566655 56778888654
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.00029 Score=86.31 Aligned_cols=219 Identities=11% Similarity=0.142 Sum_probs=141.9
Q ss_pred CEEEEEEecCCCcEEEEEECCCeEEEEECCCCceEEEeeCCCCCeEEEEEcCCC-CEEEEEEcCC-----eEEEEEcCCC
Q 001462 17 NVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAE-VLVLAGASTG-----VIKLWDLEES 90 (1074)
Q Consensus 17 ~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~k~l~sl~~hs~~ItsLafSpdg-~~LatGs~DG-----~I~VWDl~tg 90 (1074)
.|.| |++.+ ..++.|+.+|.|.+++- ..+.+..+..+...|...-|.-++ .+|++.+.|+ .|+||+++.-
T Consensus 27 ~isc--~~s~~-~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~ 102 (933)
T KOG2114|consen 27 AISC--CSSST-GSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKV 102 (933)
T ss_pred ceeE--EcCCC-ceEEEeeccccEEEecc-cceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEeccccc
Confidence 4444 45665 68999999999888763 334446677777663333344444 6777766654 5899998642
Q ss_pred ---e---eE--EEEeC-----CCCCeEEEEEcCCCCEEEEEECCCeEEEEECC----CCeEEEEEeCCCCCeEEEEEcCC
Q 001462 91 ---K---MV--RTLTG-----HKSNCTAVEFHPFGEFFASGCMDTNLKIWDIR----KKGCIHTYKGHTRGINTIRFTPD 153 (1074)
Q Consensus 91 ---k---~i--~tl~~-----h~~~VtsLafSPdg~~LaSgS~DGsI~IWDi~----tg~~v~~l~~h~~~VtsLafSPd 153 (1074)
. ++ ..+.. ...++.+++.+.+-+.+|+|-.+|.|..+.-. .|...........+|+.++|..+
T Consensus 103 ~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d 182 (933)
T KOG2114|consen 103 DKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSD 182 (933)
T ss_pred CCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecC
Confidence 1 22 11112 24578899999999999999999999998532 12222222334578999999999
Q ss_pred CCEEEEEECCCeEEEEECCCCce-EEEeeecCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCCcEEEeeC-CCCCCeEE
Q 001462 154 GRWVVSGGFDNVVKVWDLTAGKL-LHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTR-PEVTGVHA 231 (1074)
Q Consensus 154 G~~LaSgs~DGsI~VWDl~tgk~-v~~~~~h~g~ItsLafSPdg~lLaTGS~DGtI~IWDl~tg~~i~t~~-~~~~~Its 231 (1074)
+..++.+..-..|.+|.+....+ ...+..|...+.|..+++....+++++ +..|.+||.........+. ++. .-
T Consensus 183 ~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~~~cfaf~~g~k---k~ 258 (933)
T KOG2114|consen 183 GKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGRGPCFAFEVGEK---KE 258 (933)
T ss_pred CceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEec-CceEEEEcCCCcceeeeecCCCe---EE
Confidence 88744444456789999874332 444677788899999988665465555 4579999988655555544 332 23
Q ss_pred EEEecCCCEEEE
Q 001462 232 ITFHPDGRTLFS 243 (1074)
Q Consensus 232 IafSPDG~~Las 243 (1074)
+-|...|.+|++
T Consensus 259 ~~~~~~g~~L~v 270 (933)
T KOG2114|consen 259 MLVFSFGLLLCV 270 (933)
T ss_pred EEEEecCEEEEE
Confidence 334433555554
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.0062 Score=70.76 Aligned_cols=295 Identities=14% Similarity=0.118 Sum_probs=142.4
Q ss_pred ECCCCceEEEeeCCCC-----CeEEEEEcCCCCEEEEEEc-C--CeEEEEEcCCCeeEEEEeCCCCCeEEEEEcCCCCEE
Q 001462 44 AIGKPTALMSLCGLSS-----PVDSVAFDSAEVLVLAGAS-T--GVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFF 115 (1074)
Q Consensus 44 Dl~t~k~l~sl~~hs~-----~ItsLafSpdg~~LatGs~-D--G~I~VWDl~tgk~i~tl~~h~~~VtsLafSPdg~~L 115 (1074)
|..+|..+..+..... ..+.-+|.++|+.|+.++. + ..+.+.|+.+++..+.-.+.........++++++.+
T Consensus 16 D~~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~ 95 (386)
T PF14583_consen 16 DPDTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRAL 95 (386)
T ss_dssp -TTT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEE
T ss_pred CCCCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeE
Confidence 4566766666653332 2333467788987777665 4 468888999988766555433334457788988888
Q ss_pred EEEECCCeEEEEECCCCeEEEEEeCCCCCeEEEEEc--CCCCEEEEEEC----------------------CCeEEEEEC
Q 001462 116 ASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFT--PDGRWVVSGGF----------------------DNVVKVWDL 171 (1074)
Q Consensus 116 aSgS~DGsI~IWDi~tg~~v~~l~~h~~~VtsLafS--PdG~~LaSgs~----------------------DGsI~VWDl 171 (1074)
+.......|.-.|+.+++....+......+-...|. .|+..++-.-. .+.|...|+
T Consensus 96 ~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl 175 (386)
T PF14583_consen 96 YYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDL 175 (386)
T ss_dssp EEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEET
T ss_pred EEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEEC
Confidence 776666789999999988766666666655555664 45655443211 124677788
Q ss_pred CCCceEEEeeecCCCeEEEEEcCCC-cEEEEEeC---CC-eEEEEECCC-CcEEEeeCCCC--CCeEEEEEecCCCEEEE
Q 001462 172 TAGKLLHDFKFHEGHIRSIDFHPLE-FLLATGSA---DR-TVKFWDLET-FELIGSTRPEV--TGVHAITFHPDGRTLFS 243 (1074)
Q Consensus 172 ~tgk~v~~~~~h~g~ItsLafSPdg-~lLaTGS~---DG-tI~IWDl~t-g~~i~t~~~~~--~~ItsIafSPDG~~Las 243 (1074)
.+|+....+. -...+..+.|+|.. .+|..|.. +. .-+||-+++ +.....+..+. ..+..=-|.+||..|..
T Consensus 176 ~tG~~~~v~~-~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y 254 (386)
T PF14583_consen 176 KTGERKVVFE-DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWY 254 (386)
T ss_dssp TT--EEEEEE-ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEE
T ss_pred CCCceeEEEe-cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEE
Confidence 8888766665 45678899999965 44555442 11 124554432 33333333222 23445569999988775
Q ss_pred -EE-CCc----EEEEEecCCeeeeccccCCceeeEEEecCCCEEEEEECCC----------------eEEEEEcCCCcee
Q 001462 244 -GF-DDN----LKVYSWEPVICHDSVDMGWSTLGDLCINDGKLLGCSFYRN----------------SVGIWVADVSHVE 301 (1074)
Q Consensus 244 -Gs-d~~----I~Vwd~~s~~~~~~l~~~~s~~~~l~spDGklLAsgs~DG----------------sV~IWDld~~~l~ 301 (1074)
+. .++ |.-++..+..........+ ......++||++++--+.|. -|.++++..+...
T Consensus 255 ~~~~~~~~~~~i~~~d~~t~~~~~~~~~p~-~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~ 333 (386)
T PF14583_consen 255 DSYTPGGQDFWIAGYDPDTGERRRLMEMPW-CSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFR 333 (386)
T ss_dssp EEEETTT--EEEEEE-TTT--EEEEEEE-S-EEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEE
T ss_pred EeecCCCCceEEEeeCCCCCCceEEEeCCc-eeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCcee
Confidence 32 222 4445555554433344433 23444558999887655542 3455666555544
Q ss_pred eeecCC-----CCCCCC-ceeEEEEcCCCCcceeEEEEEeccCcceEEe
Q 001462 302 PYGVGA-----PEPDQS-ICTEVKFNPPGSHSLEKVGIIGRSTSGFRST 344 (1074)
Q Consensus 302 ~~~~~~-----~~~~~~-~ItsVaFSPDGs~~Lv~vlavG~stG~~r~i 344 (1074)
.+.... ..++.. .-..+.|+|||+. |++.....|.-.++
T Consensus 334 ~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~----VlF~Sd~~G~~~vY 378 (386)
T PF14583_consen 334 KLARHDTSWKVLDGDRQVTHPHPSFSPDGKW----VLFRSDMEGPPAVY 378 (386)
T ss_dssp EEEE-------BTTBSSTT----EE-TTSSE----EEEEE-TTSS-EEE
T ss_pred eeeeccCcceeecCCCccCCCCCccCCCCCE----EEEECCCCCCccEE
Confidence 333210 011111 1246799999996 55555555533333
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.08 E-value=1e-05 Score=62.64 Aligned_cols=39 Identities=28% Similarity=0.634 Sum_probs=37.0
Q ss_pred CceEEEEecCCCCEEEEEEecCCCcEEEEEECCCeEEEEE
Q 001462 5 GYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWA 44 (1074)
Q Consensus 5 G~~v~~L~gHs~~Vt~IafSPdg~~lLaTGs~DGtV~IWD 44 (1074)
|++++.|.+|.+.|++|+|+|++ .+|++|+.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~-~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDG-NFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTS-SEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEeccc-ccceeeCCCCEEEEEC
Confidence 57889999999999999999997 8999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.0057 Score=71.07 Aligned_cols=289 Identities=10% Similarity=0.051 Sum_probs=142.2
Q ss_pred ccCceEEEEecCCCCEEEE-----EEecCCCcEEEEEECCCe--EEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEE
Q 001462 3 KRGYKLQEFVAHSANVNCI-----SIGKKACRFLITGGDDQK--VNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLA 75 (1074)
Q Consensus 3 ktG~~v~~L~gHs~~Vt~I-----afSPdg~~lLaTGs~DGt--V~IWDl~t~k~l~sl~~hs~~ItsLafSpdg~~Lat 75 (1074)
.+|..|.+|..+.+.-..+ +|.++|.++|+.+..||. +++.|+.+++..+...+.........++++++.++.
T Consensus 18 ~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Y 97 (386)
T PF14583_consen 18 DTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYY 97 (386)
T ss_dssp TT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEE
T ss_pred CCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEE
Confidence 4677777776555444433 567888778887777765 555577887766554433233335667788888877
Q ss_pred EEcCCeEEEEEcCCCeeEEEEeCCCCCeEEEEEc--CCCCEEEEEEC----------------------CCeEEEEECCC
Q 001462 76 GASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFH--PFGEFFASGCM----------------------DTNLKIWDIRK 131 (1074)
Q Consensus 76 Gs~DG~I~VWDl~tgk~i~tl~~h~~~VtsLafS--Pdg~~LaSgS~----------------------DGsI~IWDi~t 131 (1074)
......|.-.|+++.+....+......+-...|. .++..++-.-. ...|.-.|+.+
T Consensus 98 v~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~t 177 (386)
T PF14583_consen 98 VKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKT 177 (386)
T ss_dssp EETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT
T ss_pred EECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCC
Confidence 6666789999999988766665555555556664 34555433210 12366678888
Q ss_pred CeEEEEEeCCCCCeEEEEEcCCCC-EEEEEEC------CCeEEEEECCCCceEEEeeecC--CCeEEEEEcCCCcEEEEE
Q 001462 132 KGCIHTYKGHTRGINTIRFTPDGR-WVVSGGF------DNVVKVWDLTAGKLLHDFKFHE--GHIRSIDFHPLEFLLATG 202 (1074)
Q Consensus 132 g~~v~~l~~h~~~VtsLafSPdG~-~LaSgs~------DGsI~VWDl~tgk~v~~~~~h~--g~ItsLafSPdg~lLaTG 202 (1074)
|+....+. ....+..+.|+|... +|..|-+ |..|.+.+.. |.....+..+. ..+..=-|.|||..|..-
T Consensus 178 G~~~~v~~-~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~d-g~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~ 255 (386)
T PF14583_consen 178 GERKVVFE-DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTD-GSNVKKVHRRMEGESVGHEFWVPDGSTIWYD 255 (386)
T ss_dssp --EEEEEE-ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETT-S---EESS---TTEEEEEEEE-TTSS-EEEE
T ss_pred CceeEEEe-cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcC-CCcceeeecCCCCcccccccccCCCCEEEEE
Confidence 77555554 455688999999544 4444443 2234444433 33333333222 224445689999766553
Q ss_pred e-----CCCeEEEEECCCCcEEEeeCCCCCCeEEEEEecCCCEEEE-EECC----------------cEEEEEecCCeee
Q 001462 203 S-----ADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFS-GFDD----------------NLKVYSWEPVICH 260 (1074)
Q Consensus 203 S-----~DGtI~IWDl~tg~~i~t~~~~~~~ItsIafSPDG~~Las-Gsd~----------------~I~Vwd~~s~~~~ 260 (1074)
+ .+..|.-+|+.+++....... .....+..++||++++. |++. -|++++.......
T Consensus 256 ~~~~~~~~~~i~~~d~~t~~~~~~~~~--p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~ 333 (386)
T PF14583_consen 256 SYTPGGQDFWIAGYDPDTGERRRLMEM--PWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFR 333 (386)
T ss_dssp EEETTT--EEEEEE-TTT--EEEEEEE---SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEE
T ss_pred eecCCCCceEEEeeCCCCCCceEEEeC--CceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCcee
Confidence 3 244688888888765432221 23445666789998876 4432 2445555544432
Q ss_pred ecccc--CC---------ceeeEEEecCCCEEEEEE-CCCeEEEEEc
Q 001462 261 DSVDM--GW---------STLGDLCINDGKLLGCSF-YRNSVGIWVA 295 (1074)
Q Consensus 261 ~~l~~--~~---------s~~~~l~spDGklLAsgs-~DGsV~IWDl 295 (1074)
....+ .| .--...|+|||++++..+ ..|...||-+
T Consensus 334 ~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v 380 (386)
T PF14583_consen 334 KLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYLV 380 (386)
T ss_dssp EEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEEE
T ss_pred eeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEEE
Confidence 21111 01 124567889999876655 5677777744
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.00015 Score=88.03 Aligned_cols=70 Identities=9% Similarity=0.213 Sum_probs=62.8
Q ss_pred EEEEEEecCCCcEEEEEECCCeEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcC
Q 001462 18 VNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLE 88 (1074)
Q Consensus 18 Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~k~l~sl~~hs~~ItsLafSpdg~~LatGs~DG~I~VWDl~ 88 (1074)
+.+++|+|.. -+|+.|-.-|.+.+|..++.+.......|..+|..+.||++|..|+++..-|.|.+|...
T Consensus 62 atSLCWHpe~-~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 62 ATSLCWHPEE-FVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred hhhhccChHH-HHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 5679999987 778888889999999998877777777899999999999999999999999999999875
|
|
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.00043 Score=83.55 Aligned_cols=134 Identities=17% Similarity=0.207 Sum_probs=94.8
Q ss_pred CEEEEEEecCCCcEEEEEECCCeEEEEECCCCceEEEe-eCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeeE--
Q 001462 17 NVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSL-CGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMV-- 93 (1074)
Q Consensus 17 ~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~k~l~sl-~~hs~~ItsLafSpdg~~LatGs~DG~I~VWDl~tgk~i-- 93 (1074)
.|.--++.-.+ .+++.|+.-|.+++|+-..++....- .+....+..+..+++..++|+|+..|.|.++-+..+...
T Consensus 35 ~v~lTc~dst~-~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~ 113 (726)
T KOG3621|consen 35 RVKLTCVDATE-EYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDL 113 (726)
T ss_pred eEEEEEeecCC-ceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcc
Confidence 34433444455 79999999999999997666543322 223455667788899999999999999999988764321
Q ss_pred ---EEE-eCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCe----EEEEEeCCCCCeEEEEEc
Q 001462 94 ---RTL-TGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKG----CIHTYKGHTRGINTIRFT 151 (1074)
Q Consensus 94 ---~tl-~~h~~~VtsLafSPdg~~LaSgS~DGsI~IWDi~tg~----~v~~l~~h~~~VtsLafS 151 (1074)
... +.|...|++++|++++..+++|...|.|..-.+.... ..+.+......|..+.+.
T Consensus 114 ~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~ 179 (726)
T KOG3621|consen 114 DYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL 179 (726)
T ss_pred eeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc
Confidence 111 2367889999999999999999999999988877621 122333345667777665
|
|
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.00019 Score=86.55 Aligned_cols=195 Identities=15% Similarity=0.226 Sum_probs=121.9
Q ss_pred CCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeeEEEEe-CCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEE-
Q 001462 58 SSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLT-GHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCI- 135 (1074)
Q Consensus 58 s~~ItsLafSpdg~~LatGs~DG~I~VWDl~tgk~i~tl~-~h~~~VtsLafSPdg~~LaSgS~DGsI~IWDi~tg~~v- 135 (1074)
...|.--+++..+.+++.|+.-|.+++|+-..++....-. +..+.+..+..+++..++|.|+..|.|.++-+..+..-
T Consensus 33 ~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~ 112 (726)
T KOG3621|consen 33 PARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRD 112 (726)
T ss_pred cceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCc
Confidence 3445555677789999999999999999976665433322 23455667788888889999999999999987654321
Q ss_pred ----EEE-eCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC----ceEEEeeecCCCeEEEEEcCCCcEEEEEeCCC
Q 001462 136 ----HTY-KGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAG----KLLHDFKFHEGHIRSIDFHPLEFLLATGSADR 206 (1074)
Q Consensus 136 ----~~l-~~h~~~VtsLafSPdG~~LaSgs~DGsI~VWDl~tg----k~v~~~~~h~g~ItsLafSPdg~lLaTGS~DG 206 (1074)
... +.|...|++++|++++..+++|...|.|.+..+... ...+.+-...+.|..+.+. ++.+|++....
T Consensus 113 ~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~-q~~LLVStl~r- 190 (726)
T KOG3621|consen 113 LDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL-QSYLLVSTLTR- 190 (726)
T ss_pred ceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc-cceehHhhhhh-
Confidence 111 236778999999999999999999999999888762 1122333346777777765 33344433322
Q ss_pred eEEEEECCCCc--EEEeeCCCCCCeEEEEEecC----CCEEEEEECCcEEEEEec
Q 001462 207 TVKFWDLETFE--LIGSTRPEVTGVHAITFHPD----GRTLFSGFDDNLKVYSWE 255 (1074)
Q Consensus 207 tI~IWDl~tg~--~i~t~~~~~~~ItsIafSPD----G~~LasGsd~~I~Vwd~~ 255 (1074)
-.+++.+... .+..-......-...+|-|. ..-.+.+..-+.++|..+
T Consensus 191 -~~Lc~tE~eti~QIG~k~R~~~~~~GACF~~g~~~~q~~~IycaRPG~RlWead 244 (726)
T KOG3621|consen 191 -CILCQTEAETITQIGKKPRKSLIDFGACFFPGQCKAQKPQIYCARPGLRLWEAD 244 (726)
T ss_pred -hheeecchhHHHHhcCCCcCCccccceEEeeccccCCCceEEEecCCCceEEee
Confidence 3344554332 12111111111234455443 233333334445888765
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.0015 Score=78.07 Aligned_cols=226 Identities=12% Similarity=0.049 Sum_probs=117.1
Q ss_pred eeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeeEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCe
Q 001462 54 LCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKG 133 (1074)
Q Consensus 54 l~~hs~~ItsLafSpdg~~LatGs~DG~I~VWDl~tgk~i~tl~~h~~~VtsLafSPdg~~LaSgS~DGsI~IWDi~tg~ 133 (1074)
+......+..+.++|+|++++++ .+|...|+.....+.... +....++|.+.++ +|+-...+.|.|+.--...
T Consensus 28 lg~~~~~p~~ls~npngr~v~V~-g~geY~iyt~~~~r~k~~-----G~g~~~vw~~~n~-yAv~~~~~~I~I~kn~~~~ 100 (443)
T PF04053_consen 28 LGSCEIYPQSLSHNPNGRFVLVC-GDGEYEIYTALAWRNKAF-----GSGLSFVWSSRNR-YAVLESSSTIKIYKNFKNE 100 (443)
T ss_dssp EEE-SS--SEEEE-TTSSEEEEE-ETTEEEEEETTTTEEEEE-----EE-SEEEE-TSSE-EEEE-TTS-EEEEETTEE-
T ss_pred CCCCCcCCeeEEECCCCCEEEEE-cCCEEEEEEccCCccccc-----CceeEEEEecCcc-EEEEECCCeEEEEEcCccc
Confidence 33445567899999999999995 578888888554443332 2345688988554 6666668889997422222
Q ss_pred EEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeeecCCCeEEEEEcCCCcEEEEEeCCCeEEEEEC
Q 001462 134 CIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDL 213 (1074)
Q Consensus 134 ~v~~l~~h~~~VtsLafSPdG~~LaSgs~DGsI~VWDl~tgk~v~~~~~h~g~ItsLafSPdg~lLaTGS~DGtI~IWDl 213 (1074)
....++. ...+..|-. |.+|+..+ ++.|.+||+.+++.+..+... +|..+.|+++|.+++..+.+ .+.|++.
T Consensus 101 ~~k~i~~-~~~~~~If~---G~LL~~~~-~~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~-~i~il~~ 172 (443)
T PF04053_consen 101 VVKSIKL-PFSVEKIFG---GNLLGVKS-SDFICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKD-SIYILKY 172 (443)
T ss_dssp TT------SS-EEEEE----SSSEEEEE-TTEEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S--SEEEEEE
T ss_pred cceEEcC-CcccceEEc---CcEEEEEC-CCCEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCC-eEEEEEe
Confidence 2223331 122444433 77777665 448999999999999998743 38999999999999998855 6777765
Q ss_pred CCC-----------cEEEeeCCCCCCeEEEEEecCCCEEEEEECCcEEEEEecCCeeeeccccCCceeeEEEecCCCEEE
Q 001462 214 ETF-----------ELIGSTRPEVTGVHAITFHPDGRTLFSGFDDNLKVYSWEPVICHDSVDMGWSTLGDLCINDGKLLG 282 (1074)
Q Consensus 214 ~tg-----------~~i~t~~~~~~~ItsIafSPDG~~LasGsd~~I~Vwd~~s~~~~~~l~~~~s~~~~l~spDGklLA 282 (1074)
+.. .....+......|.+.+|..+ .++....+.++. +-.+.............-.-..+..+.+.
T Consensus 173 ~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~~lkY--l~~Ge~~~i~~ld~~~yllgy~~~~~~ly 248 (443)
T PF04053_consen 173 NLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSNHLKY--LVNGETGIIAHLDKPLYLLGYLPKENRLY 248 (443)
T ss_dssp -HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TTEEEE--EETTEEEEEEE-SS--EEEEEETTTTEEE
T ss_pred cchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCCeEEE--EEcCCcceEEEcCCceEEEEEEccCCEEE
Confidence 432 012222221456889999877 444444446554 33333222111121222222234456666
Q ss_pred EEECCCeEEEEEcCCC
Q 001462 283 CSFYRNSVGIWVADVS 298 (1074)
Q Consensus 283 sgs~DGsV~IWDld~~ 298 (1074)
+...|+.|..+.++..
T Consensus 249 ~~Dr~~~v~~~~ld~~ 264 (443)
T PF04053_consen 249 LIDRDGNVISYELDLS 264 (443)
T ss_dssp EE-TT--EEEEE--HH
T ss_pred EEECCCCEEEEEECHH
Confidence 6677777777766533
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.00038 Score=82.61 Aligned_cols=203 Identities=15% Similarity=0.082 Sum_probs=127.6
Q ss_pred CeEEEEEcCCCeeEEEEeCCCCCeEEEEEcCCCCEEEEE---ECC-CeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCC
Q 001462 80 GVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASG---CMD-TNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGR 155 (1074)
Q Consensus 80 G~I~VWDl~tgk~i~tl~~h~~~VtsLafSPdg~~LaSg---S~D-GsI~IWDi~tg~~v~~l~~h~~~VtsLafSPdG~ 155 (1074)
+.+.+-|.+ |.....+......+..-+|+|+++.++.. ... ..++++|+.++....... ..+.-...+|+|||+
T Consensus 173 ~~l~~~D~d-g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~ 250 (425)
T COG0823 173 YELALGDYD-GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGS 250 (425)
T ss_pred ceEEEEccC-CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCC
Confidence 345555554 55556666566778888999999865554 223 469999999887555444 233345679999999
Q ss_pred EEEEEE-CCC--eEEEEECCCCceEEEeeecCCCeEEEEEcCCCcEEEEEeCC-C--eEEEEECCCCcEEEeeCCCCCCe
Q 001462 156 WVVSGG-FDN--VVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSAD-R--TVKFWDLETFELIGSTRPEVTGV 229 (1074)
Q Consensus 156 ~LaSgs-~DG--sI~VWDl~tgk~v~~~~~h~g~ItsLafSPdg~lLaTGS~D-G--tI~IWDl~tg~~i~t~~~~~~~I 229 (1074)
+|+.+. .|| .|+++|+..+.... +....+.-..-.|+|||+.|+..+.. | .|.++++..... ..+....+.-
T Consensus 251 ~l~f~~~rdg~~~iy~~dl~~~~~~~-Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~ 328 (425)
T COG0823 251 KLAFSSSRDGSPDIYLMDLDGKNLPR-LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGN 328 (425)
T ss_pred EEEEEECCCCCccEEEEcCCCCccee-cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCCCC
Confidence 887654 445 57778887766333 44334444467899999988887643 3 477777776554 3333332333
Q ss_pred EEEEEecCCCEEEEEE--CCc--EEEEEecCCeeeeccccCCceeeEEEecCCCEEEEEEC
Q 001462 230 HAITFHPDGRTLFSGF--DDN--LKVYSWEPVICHDSVDMGWSTLGDLCINDGKLLGCSFY 286 (1074)
Q Consensus 230 tsIafSPDG~~LasGs--d~~--I~Vwd~~s~~~~~~l~~~~s~~~~l~spDGklLAsgs~ 286 (1074)
..-.|+|||++|+... ++. +.+++.........+..........+.++|..+...+.
T Consensus 329 ~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~~~~~e~ps~~~ng~~i~~~s~ 389 (425)
T COG0823 329 SNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILTSTYLNESPSWAPNGRMIMFSSG 389 (425)
T ss_pred cCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEccccccCCCCCcCCCCceEEEecc
Confidence 3778999999999854 343 44555544433333444444445556677777665543
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.015 Score=68.19 Aligned_cols=282 Identities=16% Similarity=0.142 Sum_probs=181.0
Q ss_pred EEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEEEEc-CCeEEEEEcCCCeeEEEEeCCCCCeEEEEEcCCCCEEEEE
Q 001462 40 VNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGAS-TGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASG 118 (1074)
Q Consensus 40 V~IWDl~t~k~l~sl~~hs~~ItsLafSpdg~~LatGs~-DG~I~VWDl~tgk~i~tl~~h~~~VtsLafSPdg~~LaSg 118 (1074)
+.+++..+......+..+. ....+.+.+++..++.... ...+...+................-..+.+++.+..+++.
T Consensus 13 ~~v~~~~~~~~~~~~~~~~-~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~ 91 (381)
T COG3391 13 VSVINTGTNKVTAAISLGR-GPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYVT 91 (381)
T ss_pred eEEEeecccEEEEEeecCC-CCceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCCeEEEe
Confidence 5666655554444444333 5566788888855544432 2245555554222222222111334567888888855544
Q ss_pred -ECCCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEEC---CCeEEEEECCCCceEEEeeecCCCeEEEEEcC
Q 001462 119 -CMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGF---DNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHP 194 (1074)
Q Consensus 119 -S~DGsI~IWDi~tg~~v~~l~~h~~~VtsLafSPdG~~LaSgs~---DGsI~VWDl~tgk~v~~~~~h~g~ItsLafSP 194 (1074)
..++.|.+.|.......+...... ....++|+++++.+.++.. ++.+.+.|..+++..........+ ..+++.|
T Consensus 92 ~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p 169 (381)
T COG3391 92 TGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDP 169 (381)
T ss_pred cCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECC
Confidence 446889999988777777665333 5688999999988877665 689999999999888775544444 8899999
Q ss_pred CCcEEEEEe-CCCeEEEEECCCCcEEE-e---eCCCCCCeEEEEEecCCCEEEEEECC----cEEEEEecCCeeeec-cc
Q 001462 195 LEFLLATGS-ADRTVKFWDLETFELIG-S---TRPEVTGVHAITFHPDGRTLFSGFDD----NLKVYSWEPVICHDS-VD 264 (1074)
Q Consensus 195 dg~lLaTGS-~DGtI~IWDl~tg~~i~-t---~~~~~~~ItsIafSPDG~~LasGsd~----~I~Vwd~~s~~~~~~-l~ 264 (1074)
+|..++... .++.|.++|........ . ..........+.++++|.++++..++ .+.+.+......... ..
T Consensus 170 ~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~ 249 (381)
T COG3391 170 DGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLP 249 (381)
T ss_pred CCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccc
Confidence 999766665 68899999987665553 1 11222345788999999988775433 566666666555443 22
Q ss_pred cCC-ceeeEEEecCCCEEEEEEC-CCeEEEEEcCCCceeeeecCCCCCCCCceeEEEEcCCCC
Q 001462 265 MGW-STLGDLCINDGKLLGCSFY-RNSVGIWVADVSHVEPYGVGAPEPDQSICTEVKFNPPGS 325 (1074)
Q Consensus 265 ~~~-s~~~~l~spDGklLAsgs~-DGsV~IWDld~~~l~~~~~~~~~~~~~~ItsVaFSPDGs 325 (1074)
... ........|+|+++.+... .+.+.+-|.....+....... ......+..++|.+...
T Consensus 250 ~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~ 311 (381)
T COG3391 250 VGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTG-NEALGEPVSIAISPLYD 311 (381)
T ss_pred cccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeeccc-ccccccceeccceeecc
Confidence 222 5667778899998888754 478888888766655543211 22234466677776555
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.00047 Score=81.86 Aligned_cols=196 Identities=15% Similarity=0.156 Sum_probs=126.5
Q ss_pred CceEEEEecCCCCEEEEEEecCCCcEEEEEECC---CeEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEEEEc-CC
Q 001462 5 GYKLQEFVAHSANVNCISIGKKACRFLITGGDD---QKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGAS-TG 80 (1074)
Q Consensus 5 G~~v~~L~gHs~~Vt~IafSPdg~~lLaTGs~D---GtV~IWDl~t~k~l~sl~~hs~~ItsLafSpdg~~LatGs~-DG 80 (1074)
|+-.+.+..-...+..-+|+|++..+.+..-.. ..+.++++.+++....+. ....-....|+|||+.|+.+.. ||
T Consensus 182 g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg 260 (425)
T COG0823 182 GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDG 260 (425)
T ss_pred CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCC
Confidence 455555555556777889999996544443222 358999998876655444 3344456789999988776544 45
Q ss_pred --eEEEEEcCCCeeEEEEeCCCCCeEEEEEcCCCCEEEEEECC-C--eEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCC
Q 001462 81 --VIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMD-T--NLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGR 155 (1074)
Q Consensus 81 --~I~VWDl~tgk~i~tl~~h~~~VtsLafSPdg~~LaSgS~D-G--sI~IWDi~tg~~v~~l~~h~~~VtsLafSPdG~ 155 (1074)
.|.++|+..+...+ +....+.-..-.|+|||++++..+.. | .|++++...+.. ..+......-..-.|+|||+
T Consensus 261 ~~~iy~~dl~~~~~~~-Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~~~p~~SpdG~ 338 (425)
T COG0823 261 SPDIYLMDLDGKNLPR-LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGNSNPVWSPDGD 338 (425)
T ss_pred CccEEEEcCCCCccee-cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCCCCcCccCCCCCC
Confidence 57777887776444 55444445578899999998887653 3 477778766654 33333333334788999999
Q ss_pred EEEEEECC-Ce--EEEEECCCCceEEEeeecCCCeEEEEEcCCCcEEEEEeC
Q 001462 156 WVVSGGFD-NV--VKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSA 204 (1074)
Q Consensus 156 ~LaSgs~D-Gs--I~VWDl~tgk~v~~~~~h~g~ItsLafSPdg~lLaTGS~ 204 (1074)
+|+..+.. |. |.++|+.++..+..+. +......-.|.+++..+...+.
T Consensus 339 ~i~~~~~~~g~~~i~~~~~~~~~~~~~lt-~~~~~e~ps~~~ng~~i~~~s~ 389 (425)
T COG0823 339 KIVFESSSGGQWDIDKNDLASGGKIRILT-STYLNESPSWAPNGRMIMFSSG 389 (425)
T ss_pred EEEEEeccCCceeeEEeccCCCCcEEEcc-ccccCCCCCcCCCCceEEEecc
Confidence 99877643 44 6777776665433333 3333445667888876665543
|
|
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.98 E-value=4.7e-05 Score=87.34 Aligned_cols=212 Identities=16% Similarity=0.170 Sum_probs=147.6
Q ss_pred EEEEecCCCCEEEEEEecCCCcEEEEEEC-CCeEEEEECCCCceEEEeeCCCCCeEEEEEc-CCC---CEEEEE-EcCCe
Q 001462 8 LQEFVAHSANVNCISIGKKACRFLITGGD-DQKVNLWAIGKPTALMSLCGLSSPVDSVAFD-SAE---VLVLAG-ASTGV 81 (1074)
Q Consensus 8 v~~L~gHs~~Vt~IafSPdg~~lLaTGs~-DGtV~IWDl~t~k~l~sl~~hs~~ItsLafS-pdg---~~LatG-s~DG~ 81 (1074)
+.+|..|.+.|.+++.+-++ .++++.+. |..++++|+.+...+.-++...-+ ..+.|. ..| ..|+++ ..+|.
T Consensus 46 VKhFraHL~~I~sl~~S~dg-~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lP-g~a~wv~skGd~~s~IAVs~~~sg~ 123 (558)
T KOG0882|consen 46 VKHFRAHLGVILSLAVSYDG-WLFRSVEDPDHSVKVFDVENFDMINMIKLVDLP-GFAEWVTSKGDKISLIAVSLFKSGK 123 (558)
T ss_pred hhhhHHHHHHHHhhhccccc-eeEeeccCcccceeEEEeeccchhhhcccccCC-CceEEecCCCCeeeeEEeecccCCC
Confidence 45678888999999999998 77888777 999999998765444332211111 122232 223 134443 34689
Q ss_pred EEEEEcCCC--eeEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC------CeEEEEE---------eCCCCC
Q 001462 82 IKLWDLEES--KMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRK------KGCIHTY---------KGHTRG 144 (1074)
Q Consensus 82 I~VWDl~tg--k~i~tl~~h~~~VtsLafSPdg~~LaSgS~DGsI~IWDi~t------g~~v~~l---------~~h~~~ 144 (1074)
+.|+|-... +....-.-|..+|.++.+++-++.+++....|.|.-|.... ......+ ......
T Consensus 124 i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~ 203 (558)
T KOG0882|consen 124 IFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTE 203 (558)
T ss_pred cEEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccC
Confidence 999996543 23333346899999999999999999998899999998762 1111122 223445
Q ss_pred eEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeee--------------------------------cC-CCeEEEE
Q 001462 145 INTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKF--------------------------------HE-GHIRSID 191 (1074)
Q Consensus 145 VtsLafSPdG~~LaSgs~DGsI~VWDl~tgk~v~~~~~--------------------------------h~-g~ItsLa 191 (1074)
..+++|+|+|..+.+-+.|..|++++..+|+.++.+.- |. ..-..+.
T Consensus 204 pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~ 283 (558)
T KOG0882|consen 204 PTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAV 283 (558)
T ss_pred ccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeE
Confidence 78999999999999999999999999999876554421 11 1234567
Q ss_pred EcCCCcEEEEEeCCCeEEEEECCCCcEEEee
Q 001462 192 FHPLEFLLATGSADRTVKFWDLETFELIGST 222 (1074)
Q Consensus 192 fSPdg~lLaTGS~DGtI~IWDl~tg~~i~t~ 222 (1074)
|...|++|+.|+-=| |++.++.++.+...+
T Consensus 284 fdes~~flly~t~~g-ikvin~~tn~v~ri~ 313 (558)
T KOG0882|consen 284 FDESGNFLLYGTILG-IKVINLDTNTVVRIL 313 (558)
T ss_pred EcCCCCEEEeeccee-EEEEEeecCeEEEEe
Confidence 888889998887644 889999888766554
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.008 Score=68.76 Aligned_cols=262 Identities=13% Similarity=0.050 Sum_probs=162.5
Q ss_pred CeEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEEEE----------cCCeEEEEEcCCCeeEEEEeCCCC------
Q 001462 38 QKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGA----------STGVIKLWDLEESKMVRTLTGHKS------ 101 (1074)
Q Consensus 38 GtV~IWDl~t~k~l~sl~~hs~~ItsLafSpdg~~LatGs----------~DG~I~VWDl~tgk~i~tl~~h~~------ 101 (1074)
+.++++|..+++.+-.+.. +-.-.+..+|+++.++++. ..-.|.+||..+-....++.-...
T Consensus 17 ~rv~viD~d~~k~lGmi~~--g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~ 94 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDT--GFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVV 94 (342)
T ss_dssp EEEEEEETTTTEEEEEEEE--ESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS
T ss_pred ceEEEEECCCCcEEEEeec--ccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheec
Confidence 4799999988887766653 2334477899999888743 245799999999887775542221
Q ss_pred -CeEEEEEcCCCCEEEEEEC--CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC-CCceE
Q 001462 102 -NCTAVEFHPFGEFFASGCM--DTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLT-AGKLL 177 (1074)
Q Consensus 102 -~VtsLafSPdg~~LaSgS~--DGsI~IWDi~tg~~v~~l~~h~~~VtsLafSPdG~~LaSgs~DGsI~VWDl~-tgk~v 177 (1074)
....+.++.+|+++++... -..|.|.|+..++.+..+... + +..+--. ...-|.+.|.||.+....+. .|+..
T Consensus 95 ~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~P-G-C~~iyP~-~~~~F~~lC~DGsl~~v~Ld~~Gk~~ 171 (342)
T PF06433_consen 95 PYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTP-G-CWLIYPS-GNRGFSMLCGDGSLLTVTLDADGKEA 171 (342)
T ss_dssp --GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGT-S-EEEEEEE-ETTEEEEEETTSCEEEEEETSTSSEE
T ss_pred ccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCC-C-EEEEEec-CCCceEEEecCCceEEEEECCCCCEe
Confidence 2334688889998887643 467999999999998888733 2 2222111 12357788889999999887 56554
Q ss_pred EEee----ecCCCe-EEEEEcCCCcEEEEEeCCCeEEEEECCCCcEE--EeeCC----------CCCCeEEEEEecCCCE
Q 001462 178 HDFK----FHEGHI-RSIDFHPLEFLLATGSADRTVKFWDLETFELI--GSTRP----------EVTGVHAITFHPDGRT 240 (1074)
Q Consensus 178 ~~~~----~h~g~I-tsLafSPdg~lLaTGS~DGtI~IWDl~tg~~i--~t~~~----------~~~~ItsIafSPDG~~ 240 (1074)
.... ....++ ..-++...+..++..+.+|.|+-.|+...... ..+.. -.++..-+++++....
T Consensus 172 ~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~r 251 (342)
T PF06433_consen 172 QKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGR 251 (342)
T ss_dssp EEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTE
T ss_pred EeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCe
Confidence 2221 112222 23344445556666788999999888754321 11111 0134566888876666
Q ss_pred EEEE----ECC-------cEEEEEecCCeeeeccccCCceeeEEEecCCC-EEEEE-ECCCeEEEEEcCCCceeeee
Q 001462 241 LFSG----FDD-------NLKVYSWEPVICHDSVDMGWSTLGDLCINDGK-LLGCS-FYRNSVGIWVADVSHVEPYG 304 (1074)
Q Consensus 241 LasG----sd~-------~I~Vwd~~s~~~~~~l~~~~s~~~~l~spDGk-lLAsg-s~DGsV~IWDld~~~l~~~~ 304 (1074)
|++- .++ .|.+||..+.+.+..++..........+.|.+ +|.+. ..++.|.|||..+++.....
T Consensus 252 lyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~ 328 (342)
T PF06433_consen 252 LYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSI 328 (342)
T ss_dssp EEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE
T ss_pred EEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeeh
Confidence 6552 222 17777777888877777665555666676666 44433 45789999999877655443
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.0042 Score=72.84 Aligned_cols=217 Identities=17% Similarity=0.141 Sum_probs=156.5
Q ss_pred EEEEEEecCCCcEEEEEECCCeEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEEEEc---CCeEEEEEcCCCeeEE
Q 001462 18 VNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGAS---TGVIKLWDLEESKMVR 94 (1074)
Q Consensus 18 Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~k~l~sl~~hs~~ItsLafSpdg~~LatGs~---DG~I~VWDl~tgk~i~ 94 (1074)
-.++++++.+.+.+++...++.|.+.|............- .....++|++++..++++.. ++.+.+.|..+++...
T Consensus 76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG-~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~ 154 (381)
T COG3391 76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVG-LGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTA 154 (381)
T ss_pred ccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeec-cCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEE
Confidence 3467888888667777777889999997776666665432 26678999999988877665 6899999999998888
Q ss_pred EEeCCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEECCCCeEEE-E----EeCCCCCeEEEEEcCCCCEEEEEECC---Ce
Q 001462 95 TLTGHKSNCTAVEFHPFGEFFASGC-MDTNLKIWDIRKKGCIH-T----YKGHTRGINTIRFTPDGRWVVSGGFD---NV 165 (1074)
Q Consensus 95 tl~~h~~~VtsLafSPdg~~LaSgS-~DGsI~IWDi~tg~~v~-~----l~~h~~~VtsLafSPdG~~LaSgs~D---Gs 165 (1074)
.......+ ..+++.|+|++++++. .++.|.+.|........ . +. .......+.+.++|.++.+.... +.
T Consensus 155 ~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~-~~~~P~~i~v~~~g~~~yV~~~~~~~~~ 232 (381)
T COG3391 155 TIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVG-VGTGPAGIAVDPDGNRVYVANDGSGSNN 232 (381)
T ss_pred EEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccc-cCCCCceEEECCCCCEEEEEeccCCCce
Confidence 86644445 8899999999777775 67899999976655442 1 22 22345788999999977665543 58
Q ss_pred EEEEECCCCceEEEeeecCC-CeEEEEEcCCCcEEEEEeC-CCeEEEEECCCCcEEEeeCCCCC---CeEEEEEecC
Q 001462 166 VKVWDLTAGKLLHDFKFHEG-HIRSIDFHPLEFLLATGSA-DRTVKFWDLETFELIGSTRPEVT---GVHAITFHPD 237 (1074)
Q Consensus 166 I~VWDl~tgk~v~~~~~h~g-~ItsLafSPdg~lLaTGS~-DGtI~IWDl~tg~~i~t~~~~~~---~ItsIafSPD 237 (1074)
+...|..++.....-..-.. ....+.++|+|.++.+... .+.+.+.|..+......+..... .+..+++.+.
T Consensus 233 v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 309 (381)
T COG3391 233 VLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAISPL 309 (381)
T ss_pred EEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecccccccccceeccceee
Confidence 99999988877665221122 4677899999999988854 48899999988777666544322 3445555443
|
|
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.0027 Score=74.75 Aligned_cols=236 Identities=17% Similarity=0.175 Sum_probs=137.2
Q ss_pred CEEEEEEecCCCcEEEEEECCCeEEEEECCCCce-------------------------------------------EEE
Q 001462 17 NVNCISIGKKACRFLITGGDDQKVNLWAIGKPTA-------------------------------------------LMS 53 (1074)
Q Consensus 17 ~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~k~-------------------------------------------l~s 53 (1074)
.|.++.|.++. .-|++|...|.|.||.+...+. ...
T Consensus 3 ~v~~vs~a~~t-~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l 81 (395)
T PF08596_consen 3 SVTHVSFAPET-LELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL 81 (395)
T ss_dssp -EEEEEEETTT-TEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred eEEEEEecCCC-ceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence 58899999997 6799999999999997622110 011
Q ss_pred eeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeeEEEEe--C------CCCCeEEEEEcC-----CC---CEEEE
Q 001462 54 LCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLT--G------HKSNCTAVEFHP-----FG---EFFAS 117 (1074)
Q Consensus 54 l~~hs~~ItsLafSpdg~~LatGs~DG~I~VWDl~tgk~i~tl~--~------h~~~VtsLafSP-----dg---~~LaS 117 (1074)
+....++|++++.|.- -++++|..+|.+.|.|++....+..-. . ....++++.|.- |+ -.+++
T Consensus 82 ~~~~~g~vtal~~S~i-GFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~v 160 (395)
T PF08596_consen 82 LDAKQGPVTALKNSDI-GFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLV 160 (395)
T ss_dssp E---S-SEEEEEE-BT-SEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEE
T ss_pred eeccCCcEeEEecCCC-cEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEE
Confidence 1233578999998744 489999999999999998877766522 1 234678888862 22 37889
Q ss_pred EECCCeEEEEECC--C-CeE----EEEEeCCCCCeEEEE-EcCC-C-------------------CEEEEEECCCeEEEE
Q 001462 118 GCMDTNLKIWDIR--K-KGC----IHTYKGHTRGINTIR-FTPD-G-------------------RWVVSGGFDNVVKVW 169 (1074)
Q Consensus 118 gS~DGsI~IWDi~--t-g~~----v~~l~~h~~~VtsLa-fSPd-G-------------------~~LaSgs~DGsI~VW 169 (1074)
|...|.+.+|.+- . +.. ......+.+.|..|. |+.+ | ..++....+..++++
T Consensus 161 GTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~ 240 (395)
T PF08596_consen 161 GTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVF 240 (395)
T ss_dssp EETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE
T ss_pred EeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEE
Confidence 9999999999874 1 211 112223555555554 3221 0 123333446789999
Q ss_pred ECCCCceEEEeeecCCCeEEEEEc-----CCCcEEEEEeCCCeEEEEECCCCcEEEeeCCCC----CCeEEEEEecCCCE
Q 001462 170 DLTAGKLLHDFKFHEGHIRSIDFH-----PLEFLLATGSADRTVKFWDLETFELIGSTRPEV----TGVHAITFHPDGRT 240 (1074)
Q Consensus 170 Dl~tgk~v~~~~~h~g~ItsLafS-----Pdg~lLaTGS~DGtI~IWDl~tg~~i~t~~~~~----~~ItsIafSPDG~~ 240 (1074)
...+.+..+......-.+..+++- ..+..|++-..+|.|++|.+...+.+....... ..+....|+++|..
T Consensus 241 ~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis~~Gdi 320 (395)
T PF08596_consen 241 KPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSISRNGDI 320 (395)
T ss_dssp -TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-TTS-E
T ss_pred eCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccEECCCCCE
Confidence 998887665544221223334442 356788888999999999999988887765532 23456678889988
Q ss_pred EEEEECCcEEEEEe
Q 001462 241 LFSGFDDNLKVYSW 254 (1074)
Q Consensus 241 LasGsd~~I~Vwd~ 254 (1074)
++..+...+.+|.+
T Consensus 321 ~~~~gpsE~~l~sv 334 (395)
T PF08596_consen 321 FYWTGPSEIQLFSV 334 (395)
T ss_dssp EEE-SSSEEEEEEE
T ss_pred EEEeCcccEEEEEE
Confidence 77766655555543
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.0065 Score=70.36 Aligned_cols=271 Identities=14% Similarity=0.163 Sum_probs=142.0
Q ss_pred cCCCCEEEEEE---------cCCeEEEEEcCCCeeEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEE
Q 001462 67 DSAEVLVLAGA---------STGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHT 137 (1074)
Q Consensus 67 Spdg~~LatGs---------~DG~I~VWDl~tgk~i~tl~~h~~~VtsLafSPdg~~LaSgS~DGsI~IWDi~tg~~v~~ 137 (1074)
|||+++++... ..+.+.|||+.+++...... ....+....|+|+|++++... ++.|++++..++...+.
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~-~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~l 78 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTP-PPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQL 78 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS--EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEES
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcC-CccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEe
Confidence 57788777743 24679999999876544433 256788999999999999985 68899999877754432
Q ss_pred EeCC-----------------CCCeEEEEEcCCCCEEEEEECC-CeEEEEEC---CCCceEEEeeecCCCeEEEEEcCCC
Q 001462 138 YKGH-----------------TRGINTIRFTPDGRWVVSGGFD-NVVKVWDL---TAGKLLHDFKFHEGHIRSIDFHPLE 196 (1074)
Q Consensus 138 l~~h-----------------~~~VtsLafSPdG~~LaSgs~D-GsI~VWDl---~tgk~v~~~~~h~g~ItsLafSPdg 196 (1074)
-... -+.-..+.|+|||++|+....| ..|..+.+ ..... ....+..+.+-.-|
T Consensus 79 T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~------~yp~~~~~~YPk~G 152 (353)
T PF00930_consen 79 TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDS------QYPEVESIRYPKAG 152 (353)
T ss_dssp ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTE------SS-EEEEEE--BTT
T ss_pred ccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccc------cCCcccccccCCCC
Confidence 2111 1123568899999999876543 22332221 11110 00123333332122
Q ss_pred cEEEEEeCCCeEEEEECCCCcEEEee-----CCCCCCeEEEEEecCCCEEEE-EECC-----cEEEEEecCCeeee---c
Q 001462 197 FLLATGSADRTVKFWDLETFELIGST-----RPEVTGVHAITFHPDGRTLFS-GFDD-----NLKVYSWEPVICHD---S 262 (1074)
Q Consensus 197 ~lLaTGS~DGtI~IWDl~tg~~i~t~-----~~~~~~ItsIafSPDG~~Las-Gsd~-----~I~Vwd~~s~~~~~---~ 262 (1074)
.-.. .-.+.++|+.+++....- ......+..+.|.+++..|++ -.+. .+.++|..++.+.. .
T Consensus 153 ~~np----~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e 228 (353)
T PF00930_consen 153 DPNP----RVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEE 228 (353)
T ss_dssp S-------EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEE
T ss_pred CcCC----ceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEe
Confidence 2111 124677888877653211 233456889999999994444 3222 16666765544322 2
Q ss_pred cccCCce--eeEEEe-cCC-CEEEEEECCCeEEEEEcCCCceeeeecCCCCCCCCcee-EEEEcCCCCcceeEEEEEecc
Q 001462 263 VDMGWST--LGDLCI-NDG-KLLGCSFYRNSVGIWVADVSHVEPYGVGAPEPDQSICT-EVKFNPPGSHSLEKVGIIGRS 337 (1074)
Q Consensus 263 l~~~~s~--~~~l~s-pDG-klLAsgs~DGsV~IWDld~~~l~~~~~~~~~~~~~~It-sVaFSPDGs~~Lv~vlavG~s 337 (1074)
....|-. ....+. +++ .+|.....+|.-+||-++........+ ....-.|. -+.|.++++. ....+.+..
T Consensus 229 ~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~~l---T~G~~~V~~i~~~d~~~~~--iyf~a~~~~ 303 (353)
T PF00930_consen 229 TSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPRQL---TSGDWEVTSILGWDEDNNR--IYFTANGDN 303 (353)
T ss_dssp ESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEEES---S-SSS-EEEEEEEECTSSE--EEEEESSGG
T ss_pred cCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccceecc---ccCceeecccceEcCCCCE--EEEEecCCC
Confidence 2233322 133333 444 456666678876666554333332232 23344554 4788888773 222222223
Q ss_pred CcceEEeecCCc-ccceE
Q 001462 338 TSGFRSTSPDYE-TKDIK 354 (1074)
Q Consensus 338 tG~~r~ivpD~e-t~eI~ 354 (1074)
.+..+++..+.. .+++.
T Consensus 304 p~~r~lY~v~~~~~~~~~ 321 (353)
T PF00930_consen 304 PGERHLYRVSLDSGGEPK 321 (353)
T ss_dssp TTSBEEEEEETTETTEEE
T ss_pred CCceEEEEEEeCCCCCeE
Confidence 344555555544 34333
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.005 Score=68.13 Aligned_cols=199 Identities=8% Similarity=0.152 Sum_probs=119.2
Q ss_pred EEecCCCCEEEEEEecCCCcEEEEEECCCeEEEEECCCCceEEEeeCC-CCCeEEEEEcCCCCEEEEEEcCCeEEEEEcC
Q 001462 10 EFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGL-SSPVDSVAFDSAEVLVLAGASTGVIKLWDLE 88 (1074)
Q Consensus 10 ~L~gHs~~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~k~l~sl~~h-s~~ItsLafSpdg~~LatGs~DG~I~VWDl~ 88 (1074)
.+.+-...+..|+|.|+...++++....+.|..++. +|+.+..+... ....-.+++..++.++++.-.++.+.++++.
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~ 94 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTID 94 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE-
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEe
Confidence 455666679999999987688888888999988886 57777776533 3567889998888777776668999999884
Q ss_pred CCe------eEEEEe-----CCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC---CeEEEEE--------eCCCCCeE
Q 001462 89 ESK------MVRTLT-----GHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRK---KGCIHTY--------KGHTRGIN 146 (1074)
Q Consensus 89 tgk------~i~tl~-----~h~~~VtsLafSPdg~~LaSgS~DGsI~IWDi~t---g~~v~~l--------~~h~~~Vt 146 (1074)
... ....+. .++..+..++|.+.++.|+++....-..+|.+.. ...+... ......+.
T Consensus 95 ~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S 174 (248)
T PF06977_consen 95 DDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLS 174 (248)
T ss_dssp ---TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---
T ss_pred ccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceecccc
Confidence 321 112221 2455689999999988888877766566665543 2222111 11234578
Q ss_pred EEEEcCC-CCEEEEEECCCeEEEEECCCCceEEEeeecC---------CCeEEEEEcCCCcEEEEEeCCCeEEEE
Q 001462 147 TIRFTPD-GRWVVSGGFDNVVKVWDLTAGKLLHDFKFHE---------GHIRSIDFHPLEFLLATGSADRTVKFW 211 (1074)
Q Consensus 147 sLafSPd-G~~LaSgs~DGsI~VWDl~tgk~v~~~~~h~---------g~ItsLafSPdg~lLaTGS~DGtI~IW 211 (1074)
.++++|. |.+++....+..|..+| .+|+.+..+.... ...-.|+|.++|++.++ +.-+..++|
T Consensus 175 ~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIv-sEpNlfy~f 247 (248)
T PF06977_consen 175 GLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIV-SEPNLFYRF 247 (248)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEE-ETTTEEEEE
T ss_pred ceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEE-cCCceEEEe
Confidence 9999995 45666777888999999 6788776665332 24678999999865554 455554444
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.0042 Score=68.78 Aligned_cols=198 Identities=15% Similarity=0.250 Sum_probs=115.4
Q ss_pred EeeCCCCCeEEEEEcCCCC-EEEEEEcCCeEEEEEcCCCeeEEEEeCC-CCCeEEEEEcCCCCEEEEEECCCeEEEEECC
Q 001462 53 SLCGLSSPVDSVAFDSAEV-LVLAGASTGVIKLWDLEESKMVRTLTGH-KSNCTAVEFHPFGEFFASGCMDTNLKIWDIR 130 (1074)
Q Consensus 53 sl~~hs~~ItsLafSpdg~-~LatGs~DG~I~VWDl~tgk~i~tl~~h-~~~VtsLafSPdg~~LaSgS~DGsI~IWDi~ 130 (1074)
.+.+-...+..++|+|+.. ++++....+.|..++. +|+.++.+.-. .+....|++..++.++++.-.++.++++++.
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~ 94 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTID 94 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE-
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEe
Confidence 4455566799999999755 5556666788888886 57888777543 3568899998878776665568999999884
Q ss_pred CCe------EEEEEe-----CCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC---CceEEEe--e------ecCCCeE
Q 001462 131 KKG------CIHTYK-----GHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTA---GKLLHDF--K------FHEGHIR 188 (1074)
Q Consensus 131 tg~------~v~~l~-----~h~~~VtsLafSPdG~~LaSgs~DGsI~VWDl~t---gk~v~~~--~------~h~g~It 188 (1074)
... ....+. .++..+-.++|.+.++.|+++-+..-..+|.+.. ...+... . .....+.
T Consensus 95 ~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S 174 (248)
T PF06977_consen 95 DDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLS 174 (248)
T ss_dssp ---TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---
T ss_pred ccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceecccc
Confidence 321 112221 2455689999999888777777766666665543 2111111 1 1234578
Q ss_pred EEEEcCC-CcEEEEEeCCCeEEEEECCCCcEEEeeCCCC---------CCeEEEEEecCCCEEEEEECCcEEEE
Q 001462 189 SIDFHPL-EFLLATGSADRTVKFWDLETFELIGSTRPEV---------TGVHAITFHPDGRTLFSGFDDNLKVY 252 (1074)
Q Consensus 189 sLafSPd-g~lLaTGS~DGtI~IWDl~tg~~i~t~~~~~---------~~ItsIafSPDG~~LasGsd~~I~Vw 252 (1074)
+++++|. +.+++.......|..+| ..|+.+..+.-.. ...-.|+|.++|.+.+++--+-.++|
T Consensus 175 ~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvsEpNlfy~f 247 (248)
T PF06977_consen 175 GLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVSEPNLFYRF 247 (248)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEETTTEEEEE
T ss_pred ceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEcCCceEEEe
Confidence 9999996 56677777788899999 5577665543322 24679999999987777755544443
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=97.78 E-value=7.5e-05 Score=57.76 Aligned_cols=39 Identities=41% Similarity=0.846 Sum_probs=36.8
Q ss_pred CeeEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Q 001462 90 SKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWD 128 (1074)
Q Consensus 90 gk~i~tl~~h~~~VtsLafSPdg~~LaSgS~DGsI~IWD 128 (1074)
|+++..+.+|...|.+++|+|++.+|++++.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 467889999999999999999999999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.0045 Score=72.97 Aligned_cols=256 Identities=15% Similarity=0.195 Sum_probs=134.7
Q ss_pred CeEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeeEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC--------
Q 001462 60 PVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRK-------- 131 (1074)
Q Consensus 60 ~ItsLafSpdg~~LatGs~DG~I~VWDl~tgk~i~tl~~h~~~VtsLafSPdg~~LaSgS~DGsI~IWDi~t-------- 131 (1074)
.|+.+.|.++...|++|...|.|.||.+...+... ......-..+.|.+-+ ..++.-.+.|+..
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~--~~~~~~~~~~~~~~~~------~~~~~~~l~di~~r~~~~~~~ 74 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYG--NREQPPDLDYNFRRFS------LNNSPGKLTDISDRAPPSLKE 74 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE--------------------S--------GGGSS-SEEE-GGG--TT-SE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCC--ccCCCcccCccccccc------ccCCCcceEEehhhCCccccc
Confidence 57899999999999999999999999987544322 0011111122222110 1122223333321
Q ss_pred -CeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeee--------cCCCeEEEEEcC-----CC-
Q 001462 132 -KGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKF--------HEGHIRSIDFHP-----LE- 196 (1074)
Q Consensus 132 -g~~v~~l~~h~~~VtsLafSPdG~~LaSgs~DGsI~VWDl~tgk~v~~~~~--------h~g~ItsLafSP-----dg- 196 (1074)
..+...+....++|++++.+.-| +++.|..+|.+.|.|++....++.-.. ....++++.|.. |+
T Consensus 75 gf~P~~l~~~~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~y 153 (395)
T PF08596_consen 75 GFLPLTLLDAKQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGY 153 (395)
T ss_dssp EEEEEEEE---S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSS
T ss_pred ccCchhheeccCCcEeEEecCCCc-EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcc
Confidence 12334445567899999998544 799999999999999998887766331 223577787763 33
Q ss_pred --cEEEEEeCCCeEEEEECC--C-CcE----EEeeCCCCCCeEEEE-EecC---------------------CCEEEEEE
Q 001462 197 --FLLATGSADRTVKFWDLE--T-FEL----IGSTRPEVTGVHAIT-FHPD---------------------GRTLFSGF 245 (1074)
Q Consensus 197 --~lLaTGS~DGtI~IWDl~--t-g~~----i~t~~~~~~~ItsIa-fSPD---------------------G~~LasGs 245 (1074)
-.|++|...|.+.+|.+. . +.. ......+.+.|..|. |+.+ ..++++.+
T Consensus 154 SSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvS 233 (395)
T PF08596_consen 154 SSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVS 233 (395)
T ss_dssp EEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-
T ss_pred cceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEc
Confidence 578899999999999875 1 211 122223445555554 3221 13677788
Q ss_pred CCcEEEEEecCCeeeeccccC-CceeeEEEe-----cCCCEEEEEECCCeEEEEEcCC-CceeeeecCCCCCCCCceeEE
Q 001462 246 DDNLKVYSWEPVICHDSVDMG-WSTLGDLCI-----NDGKLLGCSFYRNSVGIWVADV-SHVEPYGVGAPEPDQSICTEV 318 (1074)
Q Consensus 246 d~~I~Vwd~~s~~~~~~l~~~-~s~~~~l~s-----pDGklLAsgs~DGsV~IWDld~-~~l~~~~~~~~~~~~~~ItsV 318 (1074)
+..++|+..-..+........ .......+. ..+..|++-..+|.|++|.+-. ..+....+. ...+...+...
T Consensus 234 e~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~-~~~d~~~~~~s 312 (395)
T PF08596_consen 234 ESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLP-PPLDSRRLSSS 312 (395)
T ss_dssp SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-S-S---HHHHTT-
T ss_pred ccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCC-Ccccccccccc
Confidence 888999998766554433321 111122221 3567889999999999999843 333333321 12334456677
Q ss_pred EEcCCCC
Q 001462 319 KFNPPGS 325 (1074)
Q Consensus 319 aFSPDGs 325 (1074)
.|+++|+
T Consensus 313 sis~~Gd 319 (395)
T PF08596_consen 313 SISRNGD 319 (395)
T ss_dssp EE-TTS-
T ss_pred EECCCCC
Confidence 8899998
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.011 Score=65.33 Aligned_cols=226 Identities=15% Similarity=0.142 Sum_probs=126.9
Q ss_pred CCCCEEEEEEcCCeEEEEEcCCCeeEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEE----------
Q 001462 68 SAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHT---------- 137 (1074)
Q Consensus 68 pdg~~LatGs~DG~I~VWDl~tgk~i~tl~~h~~~VtsLafSPdg~~LaSgS~DGsI~IWDi~tg~~v~~---------- 137 (1074)
..++.|+.|+.+| |.++++........+. +...|..+...++-+.|++-+ |+.+++|++..-.....
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~-~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~ 81 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRIL-KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSR 81 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEe-ecceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccc
Confidence 3578899999998 8999983332222222 233499999999888777664 69999999875433221
Q ss_pred ----EeCCCCCeEEEE--EcCCCCEEEEEECCCeEEEEECCCC-----ceEEEeeecCCCeEEEEEcCCCcEEEEEeCCC
Q 001462 138 ----YKGHTRGINTIR--FTPDGRWVVSGGFDNVVKVWDLTAG-----KLLHDFKFHEGHIRSIDFHPLEFLLATGSADR 206 (1074)
Q Consensus 138 ----l~~h~~~VtsLa--fSPdG~~LaSgs~DGsI~VWDl~tg-----k~v~~~~~h~g~ItsLafSPdg~lLaTGS~DG 206 (1074)
.......+..++ -...+...++......|.+|.+... +...++.. ...+.+++|. ++.|+.|..+
T Consensus 82 ~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~l-p~~~~~i~~~--~~~i~v~~~~- 157 (275)
T PF00780_consen 82 SLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISL-PDPPSSIAFL--GNKICVGTSK- 157 (275)
T ss_pred cccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEc-CCCcEEEEEe--CCEEEEEeCC-
Confidence 011223344444 1123333344444568888877653 45566653 4678899998 5667777754
Q ss_pred eEEEEECCCCcEEEeeCCCCC-----------CeEEEEEecCCCEEEEEECCcEEEEEecCCeeeeccccCCceeeEEEe
Q 001462 207 TVKFWDLETFELIGSTRPEVT-----------GVHAITFHPDGRTLFSGFDDNLKVYSWEPVICHDSVDMGWSTLGDLCI 275 (1074)
Q Consensus 207 tI~IWDl~tg~~i~t~~~~~~-----------~ItsIafSPDG~~LasGsd~~I~Vwd~~s~~~~~~l~~~~s~~~~l~s 275 (1074)
...+.|+.++.....+..... ....+.--+++.+|++..+-+ .+.+... .........|...-..+.
T Consensus 158 ~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Ll~~~~~g-~fv~~~G-~~~r~~~i~W~~~p~~~~ 235 (275)
T PF00780_consen 158 GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLSDNEFLLCYDNIG-VFVNKNG-EPSRKSTIQWSSAPQSVA 235 (275)
T ss_pred ceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeCCceEEEEecceE-EEEcCCC-CcCcccEEEcCCchhEEE
Confidence 478889997765443322111 112222333456666543322 2333332 222222223332222222
Q ss_pred cCCCEEEEEECCCeEEEEEcCCCceeee
Q 001462 276 NDGKLLGCSFYRNSVGIWVADVSHVEPY 303 (1074)
Q Consensus 276 pDGklLAsgs~DGsV~IWDld~~~l~~~ 303 (1074)
-...||++. .++.|.||++..+.+...
T Consensus 236 ~~~pyli~~-~~~~iEV~~~~~~~lvQ~ 262 (275)
T PF00780_consen 236 YSSPYLIAF-SSNSIEVRSLETGELVQT 262 (275)
T ss_pred EECCEEEEE-CCCEEEEEECcCCcEEEE
Confidence 244566665 456699999987766444
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.025 Score=67.20 Aligned_cols=205 Identities=11% Similarity=0.087 Sum_probs=113.7
Q ss_pred eEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeeEEEE-------eCCCCCeEEEEEcCC
Q 001462 39 KVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTL-------TGHKSNCTAVEFHPF 111 (1074)
Q Consensus 39 tV~IWDl~t~k~l~sl~~hs~~ItsLafSpdg~~LatGs~DG~I~VWDl~tgk~i~tl-------~~h~~~VtsLafSPd 111 (1074)
.|.||+. .|+.+..+.-..+.|.++.|+.+.. |++...||.++++|+.... ...+ .-....+....+..+
T Consensus 62 ~I~iys~-sG~ll~~i~w~~~~iv~~~wt~~e~-LvvV~~dG~v~vy~~~G~~-~fsl~~~i~~~~v~e~~i~~~~~~~~ 138 (410)
T PF04841_consen 62 SIQIYSS-SGKLLSSIPWDSGRIVGMGWTDDEE-LVVVQSDGTVRVYDLFGEF-QFSLGEEIEEEKVLECRIFAIWFYKN 138 (410)
T ss_pred EEEEECC-CCCEeEEEEECCCCEEEEEECCCCe-EEEEEcCCEEEEEeCCCce-eechhhhccccCcccccccccccCCC
Confidence 4888886 5666666654458999999988655 5555689999999986333 1111 111122222233334
Q ss_pred CCEEEEEECCCeEEEEECCCCe-EEEEEeCCCC---------CeEE-EEEcCCCCEEEEEECCCeEEEEECCCCceEEEe
Q 001462 112 GEFFASGCMDTNLKIWDIRKKG-CIHTYKGHTR---------GINT-IRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDF 180 (1074)
Q Consensus 112 g~~LaSgS~DGsI~IWDi~tg~-~v~~l~~h~~---------~Vts-LafSPdG~~LaSgs~DGsI~VWDl~tgk~v~~~ 180 (1074)
| +++-..++.+++..-.... ....+..... .... ..++.++...+....++.+.+.+-...+. +
T Consensus 139 G--ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i 213 (410)
T PF04841_consen 139 G--IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ---I 213 (410)
T ss_pred C--EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc---c
Confidence 5 3333345555555422211 1111110000 0000 22334444444444555555444322211 2
Q ss_pred eecCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCCcEEEeeCCC-CCCeEEEEEecCCCEEEEEECCcEEEEE
Q 001462 181 KFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPE-VTGVHAITFHPDGRTLFSGFDDNLKVYS 253 (1074)
Q Consensus 181 ~~h~g~ItsLafSPdg~lLaTGS~DGtI~IWDl~tg~~i~t~~~~-~~~ItsIafSPDG~~LasGsd~~I~Vwd 253 (1074)
. ..+++..|++||+|++||.-..+|.+.+++..-.+.+..+... ......+.|+.++..++ ...+.+.++.
T Consensus 214 ~-~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~dav~l-~~~~~l~lvg 285 (410)
T PF04841_consen 214 D-SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDAVVL-SWEDELLLVG 285 (410)
T ss_pred c-CCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCcEEE-EeCCEEEEEC
Confidence 2 2468999999999999999999999999987655555555443 34567888887654333 3344444443
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.0035 Score=74.83 Aligned_cols=145 Identities=15% Similarity=0.143 Sum_probs=88.3
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEE
Q 001462 99 HKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLH 178 (1074)
Q Consensus 99 h~~~VtsLafSPdg~~LaSgS~DGsI~IWDi~tg~~v~~l~~h~~~VtsLafSPdG~~LaSgs~DGsI~VWDl~tgk~v~ 178 (1074)
.......+.++|+|++++++ .||...||.......... +....++|.+.++ +|+-..++.|.++.--......
T Consensus 31 ~~~~p~~ls~npngr~v~V~-g~geY~iyt~~~~r~k~~-----G~g~~~vw~~~n~-yAv~~~~~~I~I~kn~~~~~~k 103 (443)
T PF04053_consen 31 CEIYPQSLSHNPNGRFVLVC-GDGEYEIYTALAWRNKAF-----GSGLSFVWSSRNR-YAVLESSSTIKIYKNFKNEVVK 103 (443)
T ss_dssp -SS--SEEEE-TTSSEEEEE-ETTEEEEEETTTTEEEEE-----EE-SEEEE-TSSE-EEEE-TTS-EEEEETTEE-TT-
T ss_pred CCcCCeeEEECCCCCEEEEE-cCCEEEEEEccCCccccc-----CceeEEEEecCcc-EEEEECCCeEEEEEcCccccce
Confidence 44457889999999999985 588888888544443322 2345688988555 6666668889997433333323
Q ss_pred EeeecCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCCcEEEeeCCCCCCeEEEEEecCCCEEEEEECCcEEEEEecCC
Q 001462 179 DFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGFDDNLKVYSWEPV 257 (1074)
Q Consensus 179 ~~~~h~g~ItsLafSPdg~lLaTGS~DGtI~IWDl~tg~~i~t~~~~~~~ItsIafSPDG~~LasGsd~~I~Vwd~~s~ 257 (1074)
.+.. ...+..|-. |.+|+..+. +.|.+||+.+++.+..+... +|..+.|+++|.+++..+++.+.|++.+..
T Consensus 104 ~i~~-~~~~~~If~---G~LL~~~~~-~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~~i~il~~~~~ 175 (443)
T PF04053_consen 104 SIKL-PFSVEKIFG---GNLLGVKSS-DFICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKDSIYILKYNLE 175 (443)
T ss_dssp -----SS-EEEEE----SSSEEEEET-TEEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S-SEEEEEE-HH
T ss_pred EEcC-CcccceEEc---CcEEEEECC-CCEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCCeEEEEEecch
Confidence 3432 223444432 777777764 48999999999999998754 389999999999999999999999887654
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.02 Score=67.38 Aligned_cols=239 Identities=10% Similarity=0.082 Sum_probs=130.9
Q ss_pred EEEEEEecCCCcEEEEEECCCe----EEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEEEEcCC-----------eE
Q 001462 18 VNCISIGKKACRFLITGGDDQK----VNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTG-----------VI 82 (1074)
Q Consensus 18 Vt~IafSPdg~~lLaTGs~DGt----V~IWDl~t~k~l~sl~~hs~~ItsLafSpdg~~LatGs~DG-----------~I 82 (1074)
+..+.++|+|..++++-+..|. ++++|+.+++.+....... ....+.|.++++.|+....+. .|
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~-~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v 204 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP-KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQV 204 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE-ESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc-ccceEEEeCCCCEEEEEEeCcccccccCCCCcEE
Confidence 3357899999555555455554 9999999997765432111 123399999988777665433 37
Q ss_pred EEEEcCCCee--EEEEeCCCCC--eEEEEEcCCCCEEEEEEC---C-CeEEEEECCCC----eEEEEEeCCCCCeEEEEE
Q 001462 83 KLWDLEESKM--VRTLTGHKSN--CTAVEFHPFGEFFASGCM---D-TNLKIWDIRKK----GCIHTYKGHTRGINTIRF 150 (1074)
Q Consensus 83 ~VWDl~tgk~--i~tl~~h~~~--VtsLafSPdg~~LaSgS~---D-GsI~IWDi~tg----~~v~~l~~h~~~VtsLaf 150 (1074)
+.|.+.+... ...+...... ...+.+++++++++.... + ..+++.|+..+ .....+......+....-
T Consensus 205 ~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~ 284 (414)
T PF02897_consen 205 YRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVD 284 (414)
T ss_dssp EEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEE
T ss_pred EEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEE
Confidence 8888876532 2333333322 568889999998776533 2 45888898774 233333333333433332
Q ss_pred cCCCCEEEEEE---CCCeEEEEECCCCce---EEEeeecCC--CeEEEEEcCCCcEEEEEeCCC--eEEEEECC-CCcEE
Q 001462 151 TPDGRWVVSGG---FDNVVKVWDLTAGKL---LHDFKFHEG--HIRSIDFHPLEFLLATGSADR--TVKFWDLE-TFELI 219 (1074)
Q Consensus 151 SPdG~~LaSgs---~DGsI~VWDl~tgk~---v~~~~~h~g--~ItsLafSPdg~lLaTGS~DG--tI~IWDl~-tg~~i 219 (1074)
+..+.+++... .++.|...++..... ...+-.+.. .+..+... .+.+++....++ .|++|++. .....
T Consensus 285 ~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~Lvl~~~~~~~~~l~v~~~~~~~~~~ 363 (414)
T PF02897_consen 285 HHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLF-KDYLVLSYRENGSSRLRVYDLDDGKESR 363 (414)
T ss_dssp EETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEE-TTEEEEEEEETTEEEEEEEETT-TEEEE
T ss_pred ccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEE-CCEEEEEEEECCccEEEEEECCCCcEEe
Confidence 33444444333 346788888887652 224444444 34444443 233444444444 58899999 54444
Q ss_pred EeeCCCCCCeEEEEEecCCCEEEEEEC-----CcEEEEEecCCe
Q 001462 220 GSTRPEVTGVHAITFHPDGRTLFSGFD-----DNLKVYSWEPVI 258 (1074)
Q Consensus 220 ~t~~~~~~~ItsIafSPDG~~LasGsd-----~~I~Vwd~~s~~ 258 (1074)
.......+.|..+...+++..+..... ..++.||+.++.
T Consensus 364 ~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~ 407 (414)
T PF02897_consen 364 EIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGE 407 (414)
T ss_dssp EEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTC
T ss_pred eecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCC
Confidence 444444555666666666666554322 235555555543
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.014 Score=68.63 Aligned_cols=245 Identities=14% Similarity=0.076 Sum_probs=133.1
Q ss_pred EEEEEcCCCCEEEEE-ECCC----eEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCC-----------eEE
Q 001462 104 TAVEFHPFGEFFASG-CMDT----NLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDN-----------VVK 167 (1074)
Q Consensus 104 tsLafSPdg~~LaSg-S~DG----sI~IWDi~tg~~v~~l~~h~~~VtsLafSPdG~~LaSgs~DG-----------sI~ 167 (1074)
..+.++|+|++++.+ +..| .|+++|+.+|+.+...-.. .....+.|.++++.|+....+. .|+
T Consensus 127 ~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~-~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~ 205 (414)
T PF02897_consen 127 GGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN-PKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVY 205 (414)
T ss_dssp EEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE-EESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEE
T ss_pred eeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccc-cccceEEEeCCCCEEEEEEeCcccccccCCCCcEEE
Confidence 357889999998876 3334 4999999999876533111 1123499999988877665332 488
Q ss_pred EEECCCCce--EEEeeecCCC--eEEEEEcCCCcEEEEEeCC----CeEEEEECCCC----cEEEeeCCCCCCeEEEEEe
Q 001462 168 VWDLTAGKL--LHDFKFHEGH--IRSIDFHPLEFLLATGSAD----RTVKFWDLETF----ELIGSTRPEVTGVHAITFH 235 (1074)
Q Consensus 168 VWDl~tgk~--v~~~~~h~g~--ItsLafSPdg~lLaTGS~D----GtI~IWDl~tg----~~i~t~~~~~~~ItsIafS 235 (1074)
+|.+.+... ...+...... ...+..++++++|+..... ..+++.|+..+ .....+......+....-+
T Consensus 206 ~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~ 285 (414)
T PF02897_consen 206 RHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVDH 285 (414)
T ss_dssp EEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEEE
T ss_pred EEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEEc
Confidence 889877643 2344433332 5688899999988765432 35788888864 2233333333333333333
Q ss_pred cCCCEEEEEECC----cEEEEEecCCee---e-eccccCCc-eeeEEEecCCCEEEEEECCC--eEEEEEcC-CCceeee
Q 001462 236 PDGRTLFSGFDD----NLKVYSWEPVIC---H-DSVDMGWS-TLGDLCINDGKLLGCSFYRN--SVGIWVAD-VSHVEPY 303 (1074)
Q Consensus 236 PDG~~LasGsd~----~I~Vwd~~s~~~---~-~~l~~~~s-~~~~l~spDGklLAsgs~DG--sV~IWDld-~~~l~~~ 303 (1074)
..+.+++.+.++ .|...++..... . ..+..... .+..+..-.+.+++....++ .|.+|++. .......
T Consensus 286 ~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~~~~~~~ 365 (414)
T PF02897_consen 286 HGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDGKESREI 365 (414)
T ss_dssp ETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT-TEEEEEE
T ss_pred cCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECCCCcEEeee
Confidence 344555544332 244455554431 1 22233332 33333333445555555565 56777877 4444444
Q ss_pred ecCCCCCCCCceeEEEEcCCCCcceeEEEEEeccCcceEEeecCCcccceEEE
Q 001462 304 GVGAPEPDQSICTEVKFNPPGSHSLEKVGIIGRSTSGFRSTSPDYETKDIKTI 356 (1074)
Q Consensus 304 ~~~~~~~~~~~ItsVaFSPDGs~~Lv~vlavG~stG~~r~ivpD~et~eI~~i 356 (1074)
. .+..+.+..+...++++.+...+...-+.. .++..|..+++....
T Consensus 366 ~----~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~---~~y~~d~~t~~~~~~ 411 (414)
T PF02897_consen 366 P----LPEAGSVSGVSGDFDSDELRFSYSSFTTPP---TVYRYDLATGELTLL 411 (414)
T ss_dssp E----SSSSSEEEEEES-TT-SEEEEEEEETTEEE---EEEEEETTTTCEEEE
T ss_pred c----CCcceEEeccCCCCCCCEEEEEEeCCCCCC---EEEEEECCCCCEEEE
Confidence 3 234556677777777775444333333333 366666666666544
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.027 Score=64.60 Aligned_cols=242 Identities=14% Similarity=0.161 Sum_probs=149.1
Q ss_pred EEEEEecCCCcEEEEEE----------CCCeEEEEECCCCceEEEeeCCC-------CCeEEEEEcCCCCEEEEEEcC--
Q 001462 19 NCISIGKKACRFLITGG----------DDQKVNLWAIGKPTALMSLCGLS-------SPVDSVAFDSAEVLVLAGAST-- 79 (1074)
Q Consensus 19 t~IafSPdg~~lLaTGs----------~DGtV~IWDl~t~k~l~sl~~hs-------~~ItsLafSpdg~~LatGs~D-- 79 (1074)
-.+.++|++ +.++++. ....|.+||..+......+.-.. .....+.++.+|+++++....
T Consensus 39 ~~~~~spdg-k~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa 117 (342)
T PF06433_consen 39 GNVALSPDG-KTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPA 117 (342)
T ss_dssp EEEEE-TTS-SEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSS
T ss_pred CceeECCCC-CEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCC
Confidence 346688998 5555432 24469999999887766543211 123457889999999886543
Q ss_pred CeEEEEEcCCCeeEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC-CCeEEEEEe----CCCCC-eEEEEEcCC
Q 001462 80 GVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIR-KKGCIHTYK----GHTRG-INTIRFTPD 153 (1074)
Q Consensus 80 G~I~VWDl~tgk~i~tl~~h~~~VtsLafSPdg~~LaSgS~DGsI~IWDi~-tg~~v~~l~----~h~~~-VtsLafSPd 153 (1074)
-.|.|.|+..++.+.++.-. .|..+--.. ++.|.+-|.||.+.-..+. .|+...... ...++ +..-++...
T Consensus 118 ~SVtVVDl~~~kvv~ei~~P--GC~~iyP~~-~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~ 194 (342)
T PF06433_consen 118 TSVTVVDLAAKKVVGEIDTP--GCWLIYPSG-NRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRD 194 (342)
T ss_dssp EEEEEEETTTTEEEEEEEGT--SEEEEEEEE-TTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETT
T ss_pred CeEEEEECCCCceeeeecCC--CEEEEEecC-CCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECC
Confidence 57999999999998887632 233222222 2457788899999999887 455443221 11222 223445555
Q ss_pred CCEEEEEECCCeEEEEECCCCceE--EEeee----------cCCCeEEEEEcCCCcEEEEEeCC---C-------eEEEE
Q 001462 154 GRWVVSGGFDNVVKVWDLTAGKLL--HDFKF----------HEGHIRSIDFHPLEFLLATGSAD---R-------TVKFW 211 (1074)
Q Consensus 154 G~~LaSgs~DGsI~VWDl~tgk~v--~~~~~----------h~g~ItsLafSPdg~lLaTGS~D---G-------tI~IW 211 (1074)
+..++..+.+|.|+-.|+...... ..+.. ..+.-.-+++++..+.|++.-.. | .|.+|
T Consensus 195 ~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~ 274 (342)
T PF06433_consen 195 GGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVY 274 (342)
T ss_dssp TTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEE
T ss_pred CCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEE
Confidence 556666788999999998765432 22221 01223457787766555554221 1 48899
Q ss_pred ECCCCcEEEeeCCCCCCeEEEEEecCCC-EEEEE--ECCcEEEEEecCCeeeecccc
Q 001462 212 DLETFELIGSTRPEVTGVHAITFHPDGR-TLFSG--FDDNLKVYSWEPVICHDSVDM 265 (1074)
Q Consensus 212 Dl~tg~~i~t~~~~~~~ItsIafSPDG~-~LasG--sd~~I~Vwd~~s~~~~~~l~~ 265 (1074)
|+.+++.+..+... .++.+|..+.+.+ +|++. .++.+.+||..+++....+..
T Consensus 275 D~~t~krv~Ri~l~-~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 275 DLKTHKRVARIPLE-HPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp ETTTTEEEEEEEEE-EEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred ECCCCeEEEEEeCC-CccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence 99999998887643 4578999999877 44443 345699999999887776653
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.018 Score=63.78 Aligned_cols=222 Identities=13% Similarity=0.137 Sum_probs=131.5
Q ss_pred cEEEEEECCCeEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeeEEE-------------
Q 001462 29 RFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRT------------- 95 (1074)
Q Consensus 29 ~lLaTGs~DGtV~IWDl~t~k~l~sl~~hs~~ItsLafSpdg~~LatGs~DG~I~VWDl~tgk~i~t------------- 95 (1074)
..|+.|..+| +++|+.........+. +...|..+...++-+.|++-+ ||.+.++++..-.....
T Consensus 8 ~~L~vGt~~G-l~~~~~~~~~~~~~i~-~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~~~ 84 (275)
T PF00780_consen 8 DRLLVGTEDG-LYVYDLSDPSKPTRIL-KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRSLP 84 (275)
T ss_pred CEEEEEECCC-EEEEEecCCccceeEe-ecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccccccccc
Confidence 6788999998 8999983333333322 223399999999877777665 59999999875433221
Q ss_pred -EeCCCCCeEEEE--EcCCC-CEEEEEECCCeEEEEECCCC-----eEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeE
Q 001462 96 -LTGHKSNCTAVE--FHPFG-EFFASGCMDTNLKIWDIRKK-----GCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVV 166 (1074)
Q Consensus 96 -l~~h~~~VtsLa--fSPdg-~~LaSgS~DGsI~IWDi~tg-----~~v~~l~~h~~~VtsLafSPdG~~LaSgs~DGsI 166 (1074)
.......+..++ -...+ .+|+++ ....|.+|.+... ...+.+. ....+..++|. ++.|+.|..+ ..
T Consensus 85 ~~~~~~~~v~~f~~~~~~~~~~~L~va-~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~--~~~i~v~~~~-~f 159 (275)
T PF00780_consen 85 TKLPETKGVSFFAVNGGHEGSRRLCVA-VKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFL--GNKICVGTSK-GF 159 (275)
T ss_pred ccccccCCeeEEeeccccccceEEEEE-ECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEe--CCEEEEEeCC-ce
Confidence 111223444444 11233 345554 4568888877542 3455555 44678999998 5567777654 47
Q ss_pred EEEECCCCceEEEeeecC------------CCeEEEEEcCCCcEEEEEeCCCeEEEEECCCCcEEE--eeCCCCCCeEEE
Q 001462 167 KVWDLTAGKLLHDFKFHE------------GHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIG--STRPEVTGVHAI 232 (1074)
Q Consensus 167 ~VWDl~tgk~v~~~~~h~------------g~ItsLafSPdg~lLaTGS~DGtI~IWDl~tg~~i~--t~~~~~~~ItsI 232 (1074)
.+.|+.++.....+.... .++..+.+. ++.+|++. |..-.+.|.. |+... .+.- ...+.++
T Consensus 160 ~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~Ll~~--~~~g~fv~~~-G~~~r~~~i~W-~~~p~~~ 234 (275)
T PF00780_consen 160 YLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLS-DNEFLLCY--DNIGVFVNKN-GEPSRKSTIQW-SSAPQSV 234 (275)
T ss_pred EEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeC-CceEEEEe--cceEEEEcCC-CCcCcccEEEc-CCchhEE
Confidence 889998776544432111 223333333 45555543 3333444443 43322 1111 2234555
Q ss_pred EEecCCCEEEEEECCcEEEEEecCCeeeecccc
Q 001462 233 TFHPDGRTLFSGFDDNLKVYSWEPVICHDSVDM 265 (1074)
Q Consensus 233 afSPDG~~LasGsd~~I~Vwd~~s~~~~~~l~~ 265 (1074)
++. ..||++-.++.|.||++.++.....+..
T Consensus 235 ~~~--~pyli~~~~~~iEV~~~~~~~lvQ~i~~ 265 (275)
T PF00780_consen 235 AYS--SPYLIAFSSNSIEVRSLETGELVQTIPL 265 (275)
T ss_pred EEE--CCEEEEECCCEEEEEECcCCcEEEEEEC
Confidence 553 4588888888899999999877666554
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.68 E-value=1e-05 Score=95.85 Aligned_cols=196 Identities=17% Similarity=0.293 Sum_probs=131.1
Q ss_pred CCEEEEEEecCCC-cEEEEEECCCeEEEEECCCCce--EEEeeCCCCCeEEEEEcC-CCCEEEEEEc----CCeEEEEEc
Q 001462 16 ANVNCISIGKKAC-RFLITGGDDQKVNLWAIGKPTA--LMSLCGLSSPVDSVAFDS-AEVLVLAGAS----TGVIKLWDL 87 (1074)
Q Consensus 16 ~~Vt~IafSPdg~-~lLaTGs~DGtV~IWDl~t~k~--l~sl~~hs~~ItsLafSp-dg~~LatGs~----DG~I~VWDl 87 (1074)
..+.|++++-+.. .++++|..+|.|.+-.+..... .....++...+++++|++ |.++||+|-. |..+.|||+
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi 136 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDI 136 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceec
Confidence 4678888766543 5788999999999988754332 334567888999999998 5567777643 457999999
Q ss_pred CCC--eeE--EEEeC-CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeE-EEEEeCCCCCeEEEEEcC-CCCEEEEE
Q 001462 88 EES--KMV--RTLTG-HKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGC-IHTYKGHTRGINTIRFTP-DGRWVVSG 160 (1074)
Q Consensus 88 ~tg--k~i--~tl~~-h~~~VtsLafSPdg~~LaSgS~DGsI~IWDi~tg~~-v~~l~~h~~~VtsLafSP-dG~~LaSg 160 (1074)
.++ .+. ..+.. ......+++|..+.+.+++|.....+.++|++.... ...+ ....+..+...| .+.|+++-
T Consensus 137 ~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~sv--nTk~vqG~tVdp~~~nY~cs~ 214 (783)
T KOG1008|consen 137 NSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSV--NTKYVQGITVDPFSPNYFCSN 214 (783)
T ss_pred ccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhh--hhhhcccceecCCCCCceecc
Confidence 876 211 12222 334566899998889999998888999999984321 1112 233466677788 67777765
Q ss_pred ECCCeEEEEEC-CCCce-EEEee----ecCCCeEEEEEcCCC-cEEEEE-eCCCeEEEEECC
Q 001462 161 GFDNVVKVWDL-TAGKL-LHDFK----FHEGHIRSIDFHPLE-FLLATG-SADRTVKFWDLE 214 (1074)
Q Consensus 161 s~DGsI~VWDl-~tgk~-v~~~~----~h~g~ItsLafSPdg-~lLaTG-S~DGtI~IWDl~ 214 (1074)
. ||.|.+||. +.-+. +..+. .....+..++|+|.. ..+++. -..++|++||+.
T Consensus 215 ~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 215 S-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred c-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence 4 999999993 33221 11111 112348899999953 234444 455789999876
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0038 Score=74.68 Aligned_cols=115 Identities=16% Similarity=0.216 Sum_probs=82.5
Q ss_pred CCeEEEEEcC-CCCEEEEE----EcCCe----EEEEEcCCCeeEEE---EeCCCCCeEEEEEcCCCCEEEEEECCCeEEE
Q 001462 59 SPVDSVAFDS-AEVLVLAG----ASTGV----IKLWDLEESKMVRT---LTGHKSNCTAVEFHPFGEFFASGCMDTNLKI 126 (1074)
Q Consensus 59 ~~ItsLafSp-dg~~LatG----s~DG~----I~VWDl~tgk~i~t---l~~h~~~VtsLafSPdg~~LaSgS~DGsI~I 126 (1074)
....++.|+. +...+.+. +.+|. -.+|++..++..+. --.....|.+++++|+.+.|+.|+.||.|.+
T Consensus 206 ~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiL 285 (545)
T PF11768_consen 206 NDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIIL 285 (545)
T ss_pred CCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEE
Confidence 3446777876 44445443 22342 34666655443211 1246788999999999999999999999999
Q ss_pred EECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCc
Q 001462 127 WDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGK 175 (1074)
Q Consensus 127 WDi~tg~~v~~l~~h~~~VtsLafSPdG~~LaSgs~DGsI~VWDl~tgk 175 (1074)
||...+..... ...-.+..++|+|+|..|++|+..|.|.+||+.-..
T Consensus 286 yD~~~~~t~~~--ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALsp 332 (545)
T PF11768_consen 286 YDTTRGVTLLA--KAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSP 332 (545)
T ss_pred EEcCCCeeeee--eecccceEEEEcCCCcEEEEEcCCceEEEEEeecCc
Confidence 99876643322 244567899999999999999999999999986543
|
|
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.032 Score=68.37 Aligned_cols=236 Identities=15% Similarity=0.166 Sum_probs=140.5
Q ss_pred EEEEEECCCeEEEEECCCCceEEEeeCCCCC-eEEEEEcC---CCCEEEEEEc------CCeEEEEEcCCCeeEEEEeCC
Q 001462 30 FLITGGDDQKVNLWAIGKPTALMSLCGLSSP-VDSVAFDS---AEVLVLAGAS------TGVIKLWDLEESKMVRTLTGH 99 (1074)
Q Consensus 30 lLaTGs~DGtV~IWDl~t~k~l~sl~~hs~~-ItsLafSp---dg~~LatGs~------DG~I~VWDl~tgk~i~tl~~h 99 (1074)
.++.++.|+.|.-.|..+|+.+......... -..+.-+| ++ .++++.. +|.|..+|.++|+.+..+..-
T Consensus 122 ~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~ 200 (527)
T TIGR03075 122 KVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTV 200 (527)
T ss_pred EEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEeccCc
Confidence 4677888999999999999988776421110 00111112 34 4555432 689999999999988765421
Q ss_pred CC-------------------------------Ce-EEEEEcCCCCEEEEEECC-----C-----------eEEEEECCC
Q 001462 100 KS-------------------------------NC-TAVEFHPFGEFFASGCMD-----T-----------NLKIWDIRK 131 (1074)
Q Consensus 100 ~~-------------------------------~V-tsLafSPdg~~LaSgS~D-----G-----------sI~IWDi~t 131 (1074)
.. .+ ..+.+.+....++.+... + .|.-.|+++
T Consensus 201 p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~T 280 (527)
T TIGR03075 201 PGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDT 280 (527)
T ss_pred CCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEcccc
Confidence 11 11 123556655666655421 2 688889999
Q ss_pred CeEEEEEeCCCCCeEE---------EEEcCCCC---EEEEEECCCeEEEEECCCCceEEE--------ee----ecCC-C
Q 001462 132 KGCIHTYKGHTRGINT---------IRFTPDGR---WVVSGGFDNVVKVWDLTAGKLLHD--------FK----FHEG-H 186 (1074)
Q Consensus 132 g~~v~~l~~h~~~Vts---------LafSPdG~---~LaSgs~DGsI~VWDl~tgk~v~~--------~~----~h~g-~ 186 (1074)
|+....++.....++. +.+..+|+ .++.+..+|.+++.|-.+|+.+.. +. ...+ +
T Consensus 281 G~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~~~~~~~g~p 360 (527)
T TIGR03075 281 GKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWATGVDLKTGRP 360 (527)
T ss_pred CCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceeccccccCCcccccccCCCCCCC
Confidence 9998887653322221 22224665 677899999999999999987622 10 0000 0
Q ss_pred e----------------------------EEEEEcCCCcEEEEEeCC---------------------------------
Q 001462 187 I----------------------------RSIDFHPLEFLLATGSAD--------------------------------- 205 (1074)
Q Consensus 187 I----------------------------tsLafSPdg~lLaTGS~D--------------------------------- 205 (1074)
+ ..++++|+..+++....+
T Consensus 361 ~~~~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~~~ 440 (527)
T TIGR03075 361 IEVPEARSADGKKGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTIKPPPDDHM 440 (527)
T ss_pred ccChhhCcCCCCCCCeeEECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccccCCCCCCCc
Confidence 0 124566655555443322
Q ss_pred CeEEEEECCCCcEEEeeCCCCCCeEEEEEecCCCEEEEEE-CCcEEEEEecCCeeeeccccCC
Q 001462 206 RTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGF-DDNLKVYSWEPVICHDSVDMGW 267 (1074)
Q Consensus 206 GtI~IWDl~tg~~i~t~~~~~~~ItsIafSPDG~~LasGs-d~~I~Vwd~~s~~~~~~l~~~~ 267 (1074)
|.|.-||+.+++.............+... -.|.+++.+. ++.++.||.++++.+..+..+.
T Consensus 441 g~l~AiD~~tGk~~W~~~~~~p~~~~~l~-t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g~ 502 (527)
T TIGR03075 441 GSLIAWDPITGKIVWEHKEDFPLWGGVLA-TAGDLVFYGTLEGYFKAFDAKTGEELWKFKTGS 502 (527)
T ss_pred eeEEEEeCCCCceeeEecCCCCCCCcceE-ECCcEEEEECCCCeEEEEECCCCCEeEEEeCCC
Confidence 45777888888877765433222222212 2344555554 6778889988888776666554
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.02 Score=67.93 Aligned_cols=235 Identities=12% Similarity=0.078 Sum_probs=127.6
Q ss_pred ccCceEEEEecCCCCEEEEEEecCCCcEEEEEECCCeEEEEECCCCceEEEe-------eCCCCCeEEEEEcCCCCEEEE
Q 001462 3 KRGYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSL-------CGLSSPVDSVAFDSAEVLVLA 75 (1074)
Q Consensus 3 ktG~~v~~L~gHs~~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~k~l~sl-------~~hs~~ItsLafSpdg~~Lat 75 (1074)
..|.++..+.--.+.|.++.|..+. .|++-..||.+++||+.. +....+ ......+.+..+..+|-.+++
T Consensus 68 ~sG~ll~~i~w~~~~iv~~~wt~~e--~LvvV~~dG~v~vy~~~G-~~~fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt 144 (410)
T PF04841_consen 68 SSGKLLSSIPWDSGRIVGMGWTDDE--ELVVVQSDGTVRVYDLFG-EFQFSLGEEIEEEKVLECRIFAIWFYKNGIVVLT 144 (410)
T ss_pred CCCCEeEEEEECCCCEEEEEECCCC--eEEEEEcCCEEEEEeCCC-ceeechhhhccccCcccccccccccCCCCEEEEC
Confidence 3577777765555899999998865 466677899999999853 321111 111222333344446644443
Q ss_pred EEcCCeEEEEEcCCCe-eEEEEeCCCC---------CeEE-EEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeCCCCC
Q 001462 76 GASTGVIKLWDLEESK-MVRTLTGHKS---------NCTA-VEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRG 144 (1074)
Q Consensus 76 Gs~DG~I~VWDl~tgk-~i~tl~~h~~---------~Vts-LafSPdg~~LaSgS~DGsI~IWDi~tg~~v~~l~~h~~~ 144 (1074)
.++.+.+..--... ..+.+..... .+.. ..++.+....+....++.+.+.+-..... +. ..++
T Consensus 145 --~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i~-~~~~ 218 (410)
T PF04841_consen 145 --GNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ---ID-SDGP 218 (410)
T ss_pred --CCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc---cc-CCCC
Confidence 34445444322211 1111110000 0000 22333444444444555555444222111 22 2357
Q ss_pred eEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeeec-CCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCCcEEEeeC
Q 001462 145 INTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFH-EGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTR 223 (1074)
Q Consensus 145 VtsLafSPdG~~LaSgs~DGsI~VWDl~tgk~v~~~~~h-~g~ItsLafSPdg~lLaTGS~DGtI~IWDl~tg~~i~t~~ 223 (1074)
+..+++||+|+++|.-..+|.+.++...-.+...++... ......+.|.-++..++.- ...|.++...
T Consensus 219 i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~dav~l~~--~~~l~lvg~~--------- 287 (410)
T PF04841_consen 219 IIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDAVVLSW--EDELLLVGPD--------- 287 (410)
T ss_pred eEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCcEEEEe--CCEEEEECCC---------
Confidence 999999999999999999999999987766777776644 3456777776543332222 3344444321
Q ss_pred CCCCCeEEEEEecCCCEEEEEECCcEEEEEecCCeeeec
Q 001462 224 PEVTGVHAITFHPDGRTLFSGFDDNLKVYSWEPVICHDS 262 (1074)
Q Consensus 224 ~~~~~ItsIafSPDG~~LasGsd~~I~Vwd~~s~~~~~~ 262 (1074)
. ..+.|.-++..++..--++++|+.-+.......
T Consensus 288 --~---~~~~~~~~~~~~l~~E~DG~riit~~~~~~l~~ 321 (410)
T PF04841_consen 288 --G---DSISFWYDGPVILVSEIDGVRIITSTSHEFLQR 321 (410)
T ss_pred --C---CceEEeccCceEEeccCCceEEEeCCceEEEEE
Confidence 1 223444455555556566678776655444333
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0049 Score=73.82 Aligned_cols=116 Identities=17% Similarity=0.178 Sum_probs=83.5
Q ss_pred CCCEEEEEEecCCCcEEEEE----ECCCeE----EEEECCCCce--EEE-eeCCCCCeEEEEEcCCCCEEEEEEcCCeEE
Q 001462 15 SANVNCISIGKKACRFLITG----GDDQKV----NLWAIGKPTA--LMS-LCGLSSPVDSVAFDSAEVLVLAGASTGVIK 83 (1074)
Q Consensus 15 s~~Vt~IafSPdg~~lLaTG----s~DGtV----~IWDl~t~k~--l~s-l~~hs~~ItsLafSpdg~~LatGs~DG~I~ 83 (1074)
.....++.|+-..++.+.+- +.+|.+ .+|++...+. +.. --.....|.|++++|+...|+.|+.||.|.
T Consensus 205 E~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSii 284 (545)
T PF11768_consen 205 ENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSII 284 (545)
T ss_pred cCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEE
Confidence 34557788887554555543 234443 4566644322 111 124678899999999999999999999999
Q ss_pred EEEcCCCeeEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC
Q 001462 84 LWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKK 132 (1074)
Q Consensus 84 VWDl~tgk~i~tl~~h~~~VtsLafSPdg~~LaSgS~DGsI~IWDi~tg 132 (1074)
+||...+.. .+....-....++|||+|..|++|+..|.+.+||+.-.
T Consensus 285 LyD~~~~~t--~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 285 LYDTTRGVT--LLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred EEEcCCCee--eeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence 999876632 23334556788999999999999999999999998643
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.022 Score=64.99 Aligned_cols=217 Identities=16% Similarity=0.126 Sum_probs=137.3
Q ss_pred EEecCCCcEEEEEECCCeEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeeEEEEeCC--
Q 001462 22 SIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGH-- 99 (1074)
Q Consensus 22 afSPdg~~lLaTGs~DGtV~IWDl~t~k~l~sl~~hs~~ItsLafSpdg~~LatGs~DG~I~VWDl~tgk~i~tl~~h-- 99 (1074)
.|.++...++++--..+.|.-|+..+++.. .+. +...+.++..-..+..|+++ ..| +.+++.+.+..+..+...
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~-~~~-~p~~~~~~~~~d~~g~Lv~~-~~g-~~~~~~~~~~~~t~~~~~~~ 106 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGKKR-VFP-SPGGFSSGALIDAGGRLIAC-EHG-VRLLDPDTGGKITLLAEPED 106 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCceE-EEE-CCCCcccceeecCCCeEEEE-ccc-cEEEeccCCceeEEeccccC
Confidence 577777556667667788888888655432 222 22333444444444445444 333 677787666553333211
Q ss_pred ---CCCeEEEEEcCCCCEEEEEEC-----------CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECC-C
Q 001462 100 ---KSNCTAVEFHPFGEFFASGCM-----------DTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFD-N 164 (1074)
Q Consensus 100 ---~~~VtsLafSPdg~~LaSgS~-----------DGsI~IWDi~tg~~v~~l~~h~~~VtsLafSPdG~~LaSgs~D-G 164 (1074)
......+...|+|.+.+.... -|.|+.+|. .+..+..+..+-..-+.|+|+||++.|+.+... +
T Consensus 107 ~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~ 185 (307)
T COG3386 107 GLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPAN 185 (307)
T ss_pred CCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCCCC
Confidence 134567888999986665433 144555554 466666666555667899999999888777654 7
Q ss_pred eEEEEECCC--Cc-----eEEEeeecCCCeEEEEEcCCCcEEEEEeCCC-eEEEEECCCCcEEEeeCCCCCCeEEEEEec
Q 001462 165 VVKVWDLTA--GK-----LLHDFKFHEGHIRSIDFHPLEFLLATGSADR-TVKFWDLETFELIGSTRPEVTGVHAITFHP 236 (1074)
Q Consensus 165 sI~VWDl~t--gk-----~v~~~~~h~g~ItsLafSPdg~lLaTGS~DG-tI~IWDl~tg~~i~t~~~~~~~ItsIafSP 236 (1074)
.|+.|++.. +. ....+....+..-.++...+|.+.+++..+| .|.+|+.. ++.+..+......+++++|--
T Consensus 186 ~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG 264 (307)
T COG3386 186 RIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGG 264 (307)
T ss_pred eEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccceEeC
Confidence 888887752 21 1222223456667788888888876555554 89999998 999988887777788888864
Q ss_pred -CCCEEEEE
Q 001462 237 -DGRTLFSG 244 (1074)
Q Consensus 237 -DG~~LasG 244 (1074)
+.+.|++.
T Consensus 265 ~~~~~L~iT 273 (307)
T COG3386 265 PDLNTLYIT 273 (307)
T ss_pred CCcCEEEEE
Confidence 44555544
|
|
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0074 Score=76.01 Aligned_cols=132 Identities=18% Similarity=0.185 Sum_probs=95.3
Q ss_pred cCCeEEEEEcCCCeeEEEEeCCCCC-eEEEEEcCC-------CCEEEEEECCCeEEEEECCCCe--EEE----EEeCCCC
Q 001462 78 STGVIKLWDLEESKMVRTLTGHKSN-CTAVEFHPF-------GEFFASGCMDTNLKIWDIRKKG--CIH----TYKGHTR 143 (1074)
Q Consensus 78 ~DG~I~VWDl~tgk~i~tl~~h~~~-VtsLafSPd-------g~~LaSgS~DGsI~IWDi~tg~--~v~----~l~~h~~ 143 (1074)
....|+-.|++.|+.+..+..+... |.. |.|+ ....++|-.+..|+.||.+-.. ++. .+ ....
T Consensus 502 ~~~~ly~mDLe~GKVV~eW~~~~~~~v~~--~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y-~~~~ 578 (794)
T PF08553_consen 502 NPNKLYKMDLERGKVVEEWKVHDDIPVVD--IAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQY-SSKN 578 (794)
T ss_pred CCCceEEEecCCCcEEEEeecCCCcceeE--ecccccccccCCCceEEEECCCceEEeccCCCCCceeecccccc-ccCC
Confidence 4578999999999999999877654 444 4443 2335566678889999988542 221 12 1334
Q ss_pred CeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeeecCCCeEEEEEcCCCcEEEEEeCCCeEEEEECC
Q 001462 144 GINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLE 214 (1074)
Q Consensus 144 ~VtsLafSPdG~~LaSgs~DGsI~VWDl~tgk~v~~~~~h~g~ItsLafSPdg~lLaTGS~DGtI~IWDl~ 214 (1074)
...|++-+.+| +||+|+.+|.|++||--.......+.+...+|.+|+.+.||+||++.+ +.+|.+++..
T Consensus 579 ~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t~ 647 (794)
T PF08553_consen 579 NFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATC-KTYLLLIDTL 647 (794)
T ss_pred CceEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEee-cceEEEEEEe
Confidence 57888887777 699999999999999432222334556678999999999999988766 5788888863
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.44 Score=54.43 Aligned_cols=268 Identities=12% Similarity=0.066 Sum_probs=130.1
Q ss_pred CCCCEEEEEEecCCCcEEEEEECCCeEEEEEC-CCCceEEEeeCC-----CCCeEEEEEcCCCCEEEEEEcCCeEEEEEc
Q 001462 14 HSANVNCISIGKKACRFLITGGDDQKVNLWAI-GKPTALMSLCGL-----SSPVDSVAFDSAEVLVLAGASTGVIKLWDL 87 (1074)
Q Consensus 14 Hs~~Vt~IafSPdg~~lLaTGs~DGtV~IWDl-~t~k~l~sl~~h-----s~~ItsLafSpdg~~LatGs~DG~I~VWDl 87 (1074)
-...+..|.|..+. +-+++| ..|.| +.. ..|+.-...... .....++.|..+ ..++ ++..| +.+...
T Consensus 15 t~~~l~dV~F~d~~-~G~~VG-~~g~i--l~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~-~g~i-vG~~g-~ll~T~ 87 (302)
T PF14870_consen 15 TDKPLLDVAFVDPN-HGWAVG-AYGTI--LKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGN-EGWI-VGEPG-LLLHTT 87 (302)
T ss_dssp -SS-EEEEEESSSS--EEEEE-TTTEE--EEESSTTSS-EE-----S-----EEEEEEEETT-EEEE-EEETT-EEEEES
T ss_pred CCCceEEEEEecCC-EEEEEe-cCCEE--EEECCCCccccccccCCCccceeeEEEEEecCC-ceEE-EcCCc-eEEEec
Confidence 35689999998544 445554 44543 333 333322222111 123567777643 3344 44555 444444
Q ss_pred CCCeeEEEEe---CCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEE-EEEeCCCCCeEEEEEcCCCCEEEEEECC
Q 001462 88 EESKMVRTLT---GHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCI-HTYKGHTRGINTIRFTPDGRWVVSGGFD 163 (1074)
Q Consensus 88 ~tgk~i~tl~---~h~~~VtsLafSPdg~~LaSgS~DGsI~IWDi~tg~~v-~~l~~h~~~VtsLafSPdG~~LaSgs~D 163 (1074)
+.|+.-..+. ........+....++..++ ++..|.|+.=. ..|+.- .........+..+..++||.+++++...
T Consensus 88 DgG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l-~~~~G~iy~T~-DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~G 165 (302)
T PF14870_consen 88 DGGKTWERVPLSSKLPGSPFGITALGDGSAEL-AGDRGAIYRTT-DGGKTWQAVVSETSGSINDITRSSDGRYVAVSSRG 165 (302)
T ss_dssp STTSS-EE----TT-SS-EEEEEEEETTEEEE-EETT--EEEES-STTSSEEEEE-S----EEEEEE-TTS-EEEEETTS
T ss_pred CCCCCcEEeecCCCCCCCeeEEEEcCCCcEEE-EcCCCcEEEeC-CCCCCeeEcccCCcceeEeEEECCCCcEEEEECcc
Confidence 5555433332 1223344455444443333 34556544332 333322 2233445678888999999988888766
Q ss_pred CeEEEEECCCCceEEEeeecCCCeEEEEEcCCCcEEEEEeCCCeEEEEE-CCCCcEEEe----eCCCCCCeEEEEEecCC
Q 001462 164 NVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWD-LETFELIGS----TRPEVTGVHAITFHPDG 238 (1074)
Q Consensus 164 GsI~VWDl~tgk~v~~~~~h~g~ItsLafSPdg~lLaTGS~DGtI~IWD-l~tg~~i~t----~~~~~~~ItsIafSPDG 238 (1074)
..+.-||--...-...-......|..|.|.|++.+.+.+ ..|.|++=+ ....+.... +......+..++|.+++
T Consensus 166 ~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~ 244 (302)
T PF14870_consen 166 NFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPN 244 (302)
T ss_dssp SEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS
T ss_pred cEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCccccccccCCcccCceeeEEEEecCCC
Confidence 666678754322222222345779999999998776654 788888887 222222222 11223458999999999
Q ss_pred CEEEEEECCcEEEEEecCCeeeecc----ccCCceeeEEEecCCCEEEEEECCCeEEEE
Q 001462 239 RTLFSGFDDNLKVYSWEPVICHDSV----DMGWSTLGDLCINDGKLLGCSFYRNSVGIW 293 (1074)
Q Consensus 239 ~~LasGsd~~I~Vwd~~s~~~~~~l----~~~~s~~~~l~spDGklLAsgs~DGsV~IW 293 (1074)
...++|..+.+ +...+.++.-... ..........|..+.+-++.| .+|.|.=|
T Consensus 245 ~~wa~gg~G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG-~~G~ll~~ 301 (302)
T PF14870_consen 245 EIWAVGGSGTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVLG-QDGVLLRY 301 (302)
T ss_dssp -EEEEESTT-E-EEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE--STTEEEEE
T ss_pred CEEEEeCCccE-EEeCCCCccceECccccCCCCceEEEEEcCCCceEEEC-CCcEEEEe
Confidence 99998888764 5555554432222 223345566666666777776 78877655
|
|
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.046 Score=62.35 Aligned_cols=172 Identities=14% Similarity=0.165 Sum_probs=105.6
Q ss_pred CeEEEEECCCCceEEEeeCC-CCCeEEE---EEcCC----CCEEEEEEc----------CCeEEEEEcCCC----eeEEE
Q 001462 38 QKVNLWAIGKPTALMSLCGL-SSPVDSV---AFDSA----EVLVLAGAS----------TGVIKLWDLEES----KMVRT 95 (1074)
Q Consensus 38 GtV~IWDl~t~k~l~sl~~h-s~~ItsL---afSpd----g~~LatGs~----------DG~I~VWDl~tg----k~i~t 95 (1074)
..|+|.|..+.+.+..+.-. ...+.++ .|..+ ..+|++|+. .|.|.++++... ..+..
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 35778887777766555322 2234433 33332 467777764 289999999884 12221
Q ss_pred E--eCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCe-EEEEEe-CCCCCeEEEEEcCCCCEEEEEECCCeEEEEEC
Q 001462 96 L--TGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKG-CIHTYK-GHTRGINTIRFTPDGRWVVSGGFDNVVKVWDL 171 (1074)
Q Consensus 96 l--~~h~~~VtsLafSPdg~~LaSgS~DGsI~IWDi~tg~-~v~~l~-~h~~~VtsLafSPdG~~LaSgs~DGsI~VWDl 171 (1074)
+ ....++|++++-. +.+|+++. ++.|++|++...+ ....-. .....+.++... ++++++|+....+.++.+
T Consensus 82 i~~~~~~g~V~ai~~~--~~~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~ 156 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSF--NGRLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRY 156 (321)
T ss_dssp EEEEEESS-EEEEEEE--TTEEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEE
T ss_pred EEEEeecCcceEhhhh--CCEEEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEE
Confidence 1 2357889988877 44455554 5889999998777 433322 122356666555 569999998887877744
Q ss_pred CC-CceEEEee--ecCCCeEEEEEcCCCcEEEEEeCCCeEEEEECC
Q 001462 172 TA-GKLLHDFK--FHEGHIRSIDFHPLEFLLATGSADRTVKFWDLE 214 (1074)
Q Consensus 172 ~t-gk~v~~~~--~h~g~ItsLafSPdg~lLaTGS~DGtI~IWDl~ 214 (1074)
.. +..+..+. .....++++.|-++++.++.+..+|.|.++...
T Consensus 157 ~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 157 DEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp ETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred EccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence 33 33232222 234458888888666799999999999999876
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.096 Score=59.94 Aligned_cols=215 Identities=13% Similarity=0.049 Sum_probs=127.6
Q ss_pred EEEcCCCCEE-EEEEcCCeEEEEEcCCCeeEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeC--
Q 001462 64 VAFDSAEVLV-LAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKG-- 140 (1074)
Q Consensus 64 LafSpdg~~L-atGs~DG~I~VWDl~tgk~i~tl~~h~~~VtsLafSPdg~~LaSgS~DGsI~IWDi~tg~~v~~l~~-- 140 (1074)
..|.++...| .+--..+.|.-|+..+++. ..+. +...+.++.....+..|+++ ..| +.+++...+..+..+..
T Consensus 30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~~-~~~~-~p~~~~~~~~~d~~g~Lv~~-~~g-~~~~~~~~~~~~t~~~~~~ 105 (307)
T COG3386 30 PVWDPDRGALLWVDILGGRIHRLDPETGKK-RVFP-SPGGFSSGALIDAGGRLIAC-EHG-VRLLDPDTGGKITLLAEPE 105 (307)
T ss_pred ccCcCCCCEEEEEeCCCCeEEEecCCcCce-EEEE-CCCCcccceeecCCCeEEEE-ccc-cEEEeccCCceeEEecccc
Confidence 4567766644 4444567899999876643 2222 23334555544445555554 333 77788766655333321
Q ss_pred ---CCCCeEEEEEcCCCCEEEEEEC-----------CCeEEEEECCCCceEEEeeecCCCeEEEEEcCCCcEEEEEeCC-
Q 001462 141 ---HTRGINTIRFTPDGRWVVSGGF-----------DNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSAD- 205 (1074)
Q Consensus 141 ---h~~~VtsLafSPdG~~LaSgs~-----------DGsI~VWDl~tgk~v~~~~~h~g~ItsLafSPdg~lLaTGS~D- 205 (1074)
.......+...|+|.+.+.... -|.|+.+|. .+..+..+..+-..-+.|+|+||++.|+.+...
T Consensus 106 ~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~ 184 (307)
T COG3386 106 DGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPA 184 (307)
T ss_pred CCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCCC
Confidence 1234567888899886554332 144666664 466666666555566889999999888877654
Q ss_pred CeEEEEECCC--Cc----E-EEeeCCCCCCeEEEEEecCCCEEEEEECC--cEEEEEecCCeeeeccccC-CceeeEEE-
Q 001462 206 RTVKFWDLET--FE----L-IGSTRPEVTGVHAITFHPDGRTLFSGFDD--NLKVYSWEPVICHDSVDMG-WSTLGDLC- 274 (1074)
Q Consensus 206 GtI~IWDl~t--g~----~-i~t~~~~~~~ItsIafSPDG~~LasGsd~--~I~Vwd~~s~~~~~~l~~~-~s~~~~l~- 274 (1074)
+.|.-|++.. +. . ...+....+..-.++...+|.+.+++..+ .|.+|+-+ +.....+... ..+.++.+
T Consensus 185 ~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~Fg 263 (307)
T COG3386 185 NRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFG 263 (307)
T ss_pred CeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccceEe
Confidence 7788887752 11 1 12222344566788899999998654433 68888888 6666666555 23333332
Q ss_pred ecCCCEEEEE
Q 001462 275 INDGKLLGCS 284 (1074)
Q Consensus 275 spDGklLAsg 284 (1074)
-++.+.|...
T Consensus 264 G~~~~~L~iT 273 (307)
T COG3386 264 GPDLNTLYIT 273 (307)
T ss_pred CCCcCEEEEE
Confidence 2555544443
|
|
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.00015 Score=86.27 Aligned_cols=195 Identities=20% Similarity=0.322 Sum_probs=125.6
Q ss_pred CCCeEEEEEcCCC--CEEEEEEcCCeEEEEEcCCCee--EEEEeCCCCCeEEEEEcCC-CCEEEEEE----CCCeEEEEE
Q 001462 58 SSPVDSVAFDSAE--VLVLAGASTGVIKLWDLEESKM--VRTLTGHKSNCTAVEFHPF-GEFFASGC----MDTNLKIWD 128 (1074)
Q Consensus 58 s~~ItsLafSpdg--~~LatGs~DG~I~VWDl~tgk~--i~tl~~h~~~VtsLafSPd-g~~LaSgS----~DGsI~IWD 128 (1074)
...+.|++++-+. ..+++|..+|.|.+-.++...- .....++...+++++|++- .+.||+|- .|..+.|||
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd 135 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD 135 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence 4557777776533 4788899999999988765332 2334567888999999984 45666662 356799999
Q ss_pred CCCC--eEE--EEEeC-CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCc-eEEEeeecCCCeEEEEEcC-CCcEEEE
Q 001462 129 IRKK--GCI--HTYKG-HTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGK-LLHDFKFHEGHIRSIDFHP-LEFLLAT 201 (1074)
Q Consensus 129 i~tg--~~v--~~l~~-h~~~VtsLafSPdG~~LaSgs~DGsI~VWDl~tgk-~v~~~~~h~g~ItsLafSP-dg~lLaT 201 (1074)
+.++ .+. ..+.+ ......+++|..+.+++++|.....++++|++..- ....+ ....+..+.+.| .+++++.
T Consensus 136 i~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~sv--nTk~vqG~tVdp~~~nY~cs 213 (783)
T KOG1008|consen 136 INSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSV--NTKYVQGITVDPFSPNYFCS 213 (783)
T ss_pred cccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhh--hhhhcccceecCCCCCceec
Confidence 9876 221 11222 33456789999999999999999999999998432 12222 233456677788 5677766
Q ss_pred EeCCCeEEEEE-CCCCcEE-EeeCC----CCCCeEEEEEecCCCEE-EEEEC--CcEEEEEec
Q 001462 202 GSADRTVKFWD-LETFELI-GSTRP----EVTGVHAITFHPDGRTL-FSGFD--DNLKVYSWE 255 (1074)
Q Consensus 202 GS~DGtI~IWD-l~tg~~i-~t~~~----~~~~ItsIafSPDG~~L-asGsd--~~I~Vwd~~ 255 (1074)
-. ||.|.+|| ..+.+.. ..+.. ....+..++|+|...-+ ++... +.|++|++.
T Consensus 214 ~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 214 NS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred cc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence 55 99999999 4433322 11111 12247899999964333 33333 346666653
|
|
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.077 Score=60.53 Aligned_cols=179 Identities=15% Similarity=0.229 Sum_probs=108.9
Q ss_pred CcEEEEEEC----------CCeEEEEECCCC----ceEEEe--eCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCCe
Q 001462 28 CRFLITGGD----------DQKVNLWAIGKP----TALMSL--CGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESK 91 (1074)
Q Consensus 28 ~~lLaTGs~----------DGtV~IWDl~t~----k~l~sl--~~hs~~ItsLafSpdg~~LatGs~DG~I~VWDl~tgk 91 (1074)
..+|++|.. .|.|.++++... ..+..+ ....++|++++-. ++ +|+++. ++.|.+|++...+
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~~-~lv~~~-g~~l~v~~l~~~~ 118 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-NG-RLVVAV-GNKLYVYDLDNSK 118 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-TT-EEEEEE-TTEEEEEEEETTS
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-CC-EEEEee-cCEEEEEEccCcc
Confidence 468887754 289999999773 223222 3457889998876 34 455544 5789999998877
Q ss_pred -eEEEEe-CCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC-CeEEEEEe--CCCCCeEEEEEcCCCCEEEEEECCCeE
Q 001462 92 -MVRTLT-GHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRK-KGCIHTYK--GHTRGINTIRFTPDGRWVVSGGFDNVV 166 (1074)
Q Consensus 92 -~i~tl~-~h~~~VtsLafSPdg~~LaSgS~DGsI~IWDi~t-g~~v~~l~--~h~~~VtsLafSPdG~~LaSgs~DGsI 166 (1074)
....-. .....+.++... ++++++|+....|.++.+.. ...+..+. .....+.++.|..+++.+++++.+|.|
T Consensus 119 ~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl 196 (321)
T PF03178_consen 119 TLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNL 196 (321)
T ss_dssp SEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEE
T ss_pred cchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeE
Confidence 443322 123356666655 77999998888888875543 33233332 234568888898766799999999999
Q ss_pred EEEECCC-------C--ceEEEeeec-CCCeEEE---EEcC--CC------cEEEEEeCCCeEEEE
Q 001462 167 KVWDLTA-------G--KLLHDFKFH-EGHIRSI---DFHP--LE------FLLATGSADRTVKFW 211 (1074)
Q Consensus 167 ~VWDl~t-------g--k~v~~~~~h-~g~ItsL---afSP--dg------~lLaTGS~DGtI~IW 211 (1074)
.++.... + +.......| ...|+++ ++.| .+ ..++.++.+|.|.+.
T Consensus 197 ~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 197 FVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp EEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred EEEEECCCCcccccccccceeEEEEECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence 9988752 2 233222333 3456666 5555 22 247778888988743
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.033 Score=69.00 Aligned_cols=192 Identities=13% Similarity=0.034 Sum_probs=106.0
Q ss_pred CCeEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEEEE------cCC--eEEEEEcCCCeeEEEEeCCCCCeEEEEE
Q 001462 37 DQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGA------STG--VIKLWDLEESKMVRTLTGHKSNCTAVEF 108 (1074)
Q Consensus 37 DGtV~IWDl~t~k~l~sl~~hs~~ItsLafSpdg~~LatGs------~DG--~I~VWDl~tgk~i~tl~~h~~~VtsLaf 108 (1074)
+|.+.-.+-.....+.-..+....+...+++|+|..++..- .|+ .|.+++. .+.. ..+.. ......-.|
T Consensus 328 ~G~l~~~~~~~~~pv~g~~g~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~-~~lt~-g~~~t~PsW 404 (591)
T PRK13616 328 DGSLVSVDGQGVTPVPGAFGQMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPL-GGVA-VQVLE-GHSLTRPSW 404 (591)
T ss_pred CCeEEEecCCCeeeCCCccccccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeC-CCcc-eeeec-CCCCCCceE
Confidence 66665443222222222223334678899999999887765 233 5666665 2333 33332 234788999
Q ss_pred cCCCCEEEEEECC------------CeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEE---EECCC
Q 001462 109 HPFGEFFASGCMD------------TNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKV---WDLTA 173 (1074)
Q Consensus 109 SPdg~~LaSgS~D------------GsI~IWDi~tg~~v~~l~~h~~~VtsLafSPdG~~LaSgs~DGsI~V---WDl~t 173 (1074)
+|+|+.+++.... +.+++.++..+.... .....|..+.|+|||..++... +|.|++ -....
T Consensus 405 spDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~ 480 (591)
T PRK13616 405 SLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTED 480 (591)
T ss_pred CCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCC
Confidence 9998877776432 233333443332222 2345799999999999888766 577777 44445
Q ss_pred Cce-E---EEeee-cCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCC-CcEEEeeCC--CCCCeEEEEEec
Q 001462 174 GKL-L---HDFKF-HEGHIRSIDFHPLEFLLATGSADRTVKFWDLET-FELIGSTRP--EVTGVHAITFHP 236 (1074)
Q Consensus 174 gk~-v---~~~~~-h~g~ItsLafSPdg~lLaTGS~DGtI~IWDl~t-g~~i~t~~~--~~~~ItsIafSP 236 (1074)
|.. + ..+.. ....+.++.|..++.++ ++..++...+|.+.- |.....+.. ...++..++-++
T Consensus 481 G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~ 550 (591)
T PRK13616 481 GQYALTNPREVGPGLGDTAVSLDWRTGDSLV-VGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASP 550 (591)
T ss_pred CceeecccEEeecccCCccccceEecCCEEE-EEecCCCCceEEEecCCccccccCCCCccCceEEEecCC
Confidence 541 1 11222 22336889999988855 555555444454332 222111122 234566666555
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.17 Score=56.34 Aligned_cols=232 Identities=13% Similarity=0.109 Sum_probs=139.1
Q ss_pred CeEEEEEcCCC-CEEEEEEcCCe-EEEEEcCCCeeEEEEeCCCCC--eEEEEEcCCCCEEEEEECC-----CeEEEEECC
Q 001462 60 PVDSVAFDSAE-VLVLAGASTGV-IKLWDLEESKMVRTLTGHKSN--CTAVEFHPFGEFFASGCMD-----TNLKIWDIR 130 (1074)
Q Consensus 60 ~ItsLafSpdg-~~LatGs~DG~-I~VWDl~tgk~i~tl~~h~~~--VtsLafSPdg~~LaSgS~D-----GsI~IWDi~ 130 (1074)
....++|+|.- .-++.+-.-|+ ..++|....+....+....+. --.-.|+|||.+|+..-.| |.|-|||.+
T Consensus 69 R~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r 148 (366)
T COG3490 69 RGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAR 148 (366)
T ss_pred ccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecc
Confidence 34567888743 45555555554 568888877766555432221 1124799999998887443 789999987
Q ss_pred CC-eEEEEEeCCCCCeEEEEEcCCCCEEEEEEC------------------CCeEEEEECCCCceEEEee----ecCCCe
Q 001462 131 KK-GCIHTYKGHTRGINTIRFTPDGRWVVSGGF------------------DNVVKVWDLTAGKLLHDFK----FHEGHI 187 (1074)
Q Consensus 131 tg-~~v~~l~~h~~~VtsLafSPdG~~LaSgs~------------------DGsI~VWDl~tgk~v~~~~----~h~g~I 187 (1074)
.+ ..+..+..|.-....+.|.+||+.++.+.. .-.+.+.|..+|.++.+.. .+.-.|
T Consensus 149 ~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSi 228 (366)
T COG3490 149 EGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSI 228 (366)
T ss_pred cccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcce
Confidence 54 346667778878899999999998887642 1134555655665544322 234568
Q ss_pred EEEEEcCCCcEEEEEeCCCe-----EEEEECCCCcEEEeeCCC-------CCCeEEEEEecCCCEEEEEE--CCcEEEEE
Q 001462 188 RSIDFHPLEFLLATGSADRT-----VKFWDLETFELIGSTRPE-------VTGVHAITFHPDGRTLFSGF--DDNLKVYS 253 (1074)
Q Consensus 188 tsLafSPdg~lLaTGS~DGt-----I~IWDl~tg~~i~t~~~~-------~~~ItsIafSPDG~~LasGs--d~~I~Vwd 253 (1074)
..++..+||..++.+-..|. -.+=-...++.+.-+... ...|-+|+.+.+..+++..+ .+...+||
T Consensus 229 RHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~d 308 (366)
T COG3490 229 RHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWD 308 (366)
T ss_pred eeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEE
Confidence 88888888877765543331 111111233333333221 23467888887666666653 44578999
Q ss_pred ecCCeeeeccccCCceeeEEEecCCCEEEEEECCCeEEEEE
Q 001462 254 WEPVICHDSVDMGWSTLGDLCINDGKLLGCSFYRNSVGIWV 294 (1074)
Q Consensus 254 ~~s~~~~~~l~~~~s~~~~l~spDGklLAsgs~DGsV~IWD 294 (1074)
..++......... ....+. ..+.-++.++.+|.+.++.
T Consensus 309 a~tG~vv~~a~l~--daaGva-~~~~gf~vssg~G~~~~~s 346 (366)
T COG3490 309 AATGAVVSEAALP--DAAGVA-AAKGGFAVSSGQGRIIFYS 346 (366)
T ss_pred cCCCcEEeccccc--ccccce-eccCceEEecCCceEEecc
Confidence 9988765543322 111122 2333355556788888773
|
|
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.012 Score=74.17 Aligned_cols=134 Identities=14% Similarity=0.099 Sum_probs=96.2
Q ss_pred CCCeEEEEECCCCeEEEEEeCCCCC-eEEEEEcC-----CCCEEEEEECCCeEEEEECCCCc--eEEE-ee--ecCCCeE
Q 001462 120 MDTNLKIWDIRKKGCIHTYKGHTRG-INTIRFTP-----DGRWVVSGGFDNVVKVWDLTAGK--LLHD-FK--FHEGHIR 188 (1074)
Q Consensus 120 ~DGsI~IWDi~tg~~v~~l~~h~~~-VtsLafSP-----dG~~LaSgs~DGsI~VWDl~tgk--~v~~-~~--~h~g~It 188 (1074)
....|+-.|+..|+.+..++.+... |..++-.. +....+.|-.+..|..||.+-.. ++.. .+ .......
T Consensus 502 ~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs 581 (794)
T PF08553_consen 502 NPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFS 581 (794)
T ss_pred CCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCce
Confidence 4578999999999999999877654 44443221 12345667778899999998632 3321 11 1234567
Q ss_pred EEEEcCCCcEEEEEeCCCeEEEEECCCCcEEEeeCCCCCCeEEEEEecCCCEEEEEECCcEEEEEe
Q 001462 189 SIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGFDDNLKVYSW 254 (1074)
Q Consensus 189 sLafSPdg~lLaTGS~DGtI~IWDl~tg~~i~t~~~~~~~ItsIafSPDG~~LasGsd~~I~Vwd~ 254 (1074)
|++-..+| +||+|+.+|.|++||--.......+.+...+|.+|..+.||+||++.++..|.+++.
T Consensus 582 ~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~tyLlLi~t 646 (794)
T PF08553_consen 582 CFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCKTYLLLIDT 646 (794)
T ss_pred EEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeecceEEEEEE
Confidence 78777666 688899999999999543222233455678999999999999999999999888885
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.01 E-value=1.8 Score=55.31 Aligned_cols=328 Identities=13% Similarity=0.108 Sum_probs=181.1
Q ss_pred CCCEEEEEEecC--CCc---EEEEEECCCeEEEEE-CCCCceEEEe--e--CCCCCeEEEEEcCCCCEEEEEEcCCeEEE
Q 001462 15 SANVNCISIGKK--ACR---FLITGGDDQKVNLWA-IGKPTALMSL--C--GLSSPVDSVAFDSAEVLVLAGASTGVIKL 84 (1074)
Q Consensus 15 s~~Vt~IafSPd--g~~---lLaTGs~DGtV~IWD-l~t~k~l~sl--~--~hs~~ItsLafSpdg~~LatGs~DG~I~V 84 (1074)
...|.|+.++|- +.+ +++.|..+..+.+.- ..+...+... . .-...|.-..|-.+..+|+++..||.+.-
T Consensus 530 e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~ 609 (1096)
T KOG1897|consen 530 EYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLY 609 (1096)
T ss_pred cceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEE
Confidence 467999999975 333 888988876665543 3333332222 1 12334555666667889999999998876
Q ss_pred EEc--CCCeeEEEE--eCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEE-EEeCCCCCeEE-EEEcC--CCCE
Q 001462 85 WDL--EESKMVRTL--TGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIH-TYKGHTRGINT-IRFTP--DGRW 156 (1074)
Q Consensus 85 WDl--~tgk~i~tl--~~h~~~VtsLafSPdg~~LaSgS~DGsI~IWDi~tg~~v~-~l~~h~~~Vts-LafSP--dG~~ 156 (1074)
|-+ .+|.....- .-...++.--.|...++.-+.++.|.-..+|..+ ++.+. .+.- ..+.. +.|+. .+..
T Consensus 610 fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n-~kLv~spls~--kev~~~c~f~s~a~~d~ 686 (1096)
T KOG1897|consen 610 FVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSN-GKLVYSPLSL--KEVNHMCPFNSDAYPDS 686 (1096)
T ss_pred EEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecC-CcEEEeccch--HHhhhhcccccccCCce
Confidence 644 444432211 1234566666777666555555567666677643 33322 2211 11111 12322 2234
Q ss_pred EEEEECCCeEEEEECCCCce--EEEeeecCCCeEEEEEcCCCcEEEEEeCC--------------CeEEEEECCCCcEEE
Q 001462 157 VVSGGFDNVVKVWDLTAGKL--LHDFKFHEGHIRSIDFHPLEFLLATGSAD--------------RTVKFWDLETFELIG 220 (1074)
Q Consensus 157 LaSgs~DGsI~VWDl~tgk~--v~~~~~h~g~ItsLafSPdg~lLaTGS~D--------------GtI~IWDl~tg~~i~ 220 (1074)
|+.+. .+.+.+.-+..-+. ++++. -......+++.+....+++.+.. ..++++|-++.+.+.
T Consensus 687 l~~~~-~~~l~i~tid~iqkl~irtvp-l~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~ 764 (1096)
T KOG1897|consen 687 LASAN-GGALTIGTIDEIQKLHIRTVP-LGESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLS 764 (1096)
T ss_pred EEEec-CCceEEEEecchhhcceeeec-CCCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCceeEEe
Confidence 55544 45666665544322 22333 23345667777644444443211 247888888887765
Q ss_pred eeCCCC----CCeEEEEEecC-CCEEEEEE-----------CCcEEEEEecCCeeee---ccccCCceeeEEEecCCCEE
Q 001462 221 STRPEV----TGVHAITFHPD-GRTLFSGF-----------DDNLKVYSWEPVICHD---SVDMGWSTLGDLCINDGKLL 281 (1074)
Q Consensus 221 t~~~~~----~~ItsIafSPD-G~~LasGs-----------d~~I~Vwd~~s~~~~~---~l~~~~s~~~~l~spDGklL 281 (1074)
...... ..+.++.|..| +.++++|. .|.|.||.+....... .......+ ..++.-+|++|
T Consensus 765 ~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav-~aL~~fngkll 843 (1096)
T KOG1897|consen 765 SHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAV-YALVEFNGKLL 843 (1096)
T ss_pred eccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccce-eehhhhCCeEE
Confidence 543322 23555568888 78888874 2447888877622211 11222222 22233477777
Q ss_pred EEEECCCeEEEEEcCCCceeeeecCCCCCCCCceeEEEEcCCCCcceeEEEEEeccCcceEEeecCCcccceEEEeec
Q 001462 282 GCSFYRNSVGIWVADVSHVEPYGVGAPEPDQSICTEVKFNPPGSHSLEKVGIIGRSTSGFRSTSPDYETKDIKTIYVD 359 (1074)
Q Consensus 282 Asgs~DGsV~IWDld~~~l~~~~~~~~~~~~~~ItsVaFSPDGs~~Lv~vlavG~stG~~r~ivpD~et~eI~~i~iD 359 (1074)
|. -+..|++|+...++..... ..+..++..+...-.|+ -+++|...+.+..+..+-..+.++..-.|
T Consensus 844 A~--In~~vrLye~t~~~eLr~e----~~~~~~~~aL~l~v~gd-----eI~VgDlm~Sitll~y~~~eg~f~evArD 910 (1096)
T KOG1897|consen 844 AG--INQSVRLYEWTTERELRIE----CNISNPIIALDLQVKGD-----EIAVGDLMRSITLLQYKGDEGNFEEVARD 910 (1096)
T ss_pred Ee--cCcEEEEEEccccceehhh----hcccCCeEEEEEEecCc-----EEEEeeccceEEEEEEeccCCceEEeehh
Confidence 75 4678999988655322222 45667788888888888 55566655555555555444445544443
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.08 Score=65.68 Aligned_cols=170 Identities=13% Similarity=0.052 Sum_probs=98.7
Q ss_pred CCeEEEEEcCCCeeEEEEeCCCCCeEEEEEcCCCCEEEEEE------CC--CeEEEEECCCCeEEEEEeCCCCCeEEEEE
Q 001462 79 TGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGC------MD--TNLKIWDIRKKGCIHTYKGHTRGINTIRF 150 (1074)
Q Consensus 79 DG~I~VWDl~tgk~i~tl~~h~~~VtsLafSPdg~~LaSgS------~D--GsI~IWDi~tg~~v~~l~~h~~~VtsLaf 150 (1074)
+|.+.-.+-..-..+.-..+....+...+++|+|+.++... .| ..|++++.. +.......+ .......|
T Consensus 328 ~G~l~~~~~~~~~pv~g~~g~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~~~lt~g--~~~t~PsW 404 (591)
T PRK13616 328 DGSLVSVDGQGVTPVPGAFGQMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVAVQVLEG--HSLTRPSW 404 (591)
T ss_pred CCeEEEecCCCeeeCCCccccccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-CcceeeecC--CCCCCceE
Confidence 66665543222122222222334678899999999887765 23 356666752 333222232 23788999
Q ss_pred cCCCCEEEEEECC------------CeEEEEECCCCceEEEeeecCCCeEEEEEcCCCcEEEEEeCCCeEEE---EECCC
Q 001462 151 TPDGRWVVSGGFD------------NVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKF---WDLET 215 (1074)
Q Consensus 151 SPdG~~LaSgs~D------------GsI~VWDl~tgk~v~~~~~h~g~ItsLafSPdg~lLaTGS~DGtI~I---WDl~t 215 (1074)
+|+|.+|++.... +.+.+.++..+.... ...+.|..+.|+|||..|+... +|.|++ -....
T Consensus 405 spDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~ 480 (591)
T PRK13616 405 SLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTED 480 (591)
T ss_pred CCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCC
Confidence 9998877776532 233333444333322 2356799999999999888766 577777 44444
Q ss_pred CcE-E---EeeCC-CCCCeEEEEEecCCCEEEEEECCcEEEEEec
Q 001462 216 FEL-I---GSTRP-EVTGVHAITFHPDGRTLFSGFDDNLKVYSWE 255 (1074)
Q Consensus 216 g~~-i---~t~~~-~~~~ItsIafSPDG~~LasGsd~~I~Vwd~~ 255 (1074)
|.. + ..+.. ....+.++.|..++.+++...+..-.+|.+.
T Consensus 481 G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~V~~~~~~~~v~~v~ 525 (591)
T PRK13616 481 GQYALTNPREVGPGLGDTAVSLDWRTGDSLVVGRSDPEHPVWYVN 525 (591)
T ss_pred CceeecccEEeecccCCccccceEecCCEEEEEecCCCCceEEEe
Confidence 541 1 11222 2233588999999996655444444455544
|
|
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=96.98 E-value=1.9 Score=54.73 Aligned_cols=110 Identities=12% Similarity=0.036 Sum_probs=69.9
Q ss_pred CeEEEEEcCCCCEEEEEEcC-----CeEEEEEcCCCeeEEEEeCCCCCeEEEEEcCCCCEEEEEECC------CeEEEEE
Q 001462 60 PVDSVAFDSAEVLVLAGAST-----GVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMD------TNLKIWD 128 (1074)
Q Consensus 60 ~ItsLafSpdg~~LatGs~D-----G~I~VWDl~tgk~i~tl~~h~~~VtsLafSPdg~~LaSgS~D------GsI~IWD 128 (1074)
.+..+.|+|+|++|+.+... ..|++.|+.+|..+........ ..++|.+|++.|+.+..+ ..|+.|+
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~ 205 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRHT 205 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEEE
Confidence 46678899999988876443 3688999988864322211111 469999999877666442 3688889
Q ss_pred CCCC--eEEEEEeCCCCCeE-EEEEcCCCCEEEEEEC---CCeEEEEEC
Q 001462 129 IRKK--GCIHTYKGHTRGIN-TIRFTPDGRWVVSGGF---DNVVKVWDL 171 (1074)
Q Consensus 129 i~tg--~~v~~l~~h~~~Vt-sLafSPdG~~LaSgs~---DGsI~VWDl 171 (1074)
+.++ +....+........ .+..+.++++++..+. ++.+.+|+.
T Consensus 206 lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~ 254 (686)
T PRK10115 206 IGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA 254 (686)
T ss_pred CCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence 8877 33334443333333 3334448887765443 457888884
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.12 Score=57.83 Aligned_cols=196 Identities=14% Similarity=0.182 Sum_probs=129.5
Q ss_pred eCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeeEEEEeCC-CCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCe
Q 001462 55 CGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGH-KSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKG 133 (1074)
Q Consensus 55 ~~hs~~ItsLafSpdg~~LatGs~DG~I~VWDl~tgk~i~tl~~h-~~~VtsLafSPdg~~LaSgS~DGsI~IWDi~tg~ 133 (1074)
.+....+.++.|+|+.+.|++......-.||=-..|+.+.++.-. -..-..|.|..+|++.++--.++.++++.+..+.
T Consensus 82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t 161 (316)
T COG3204 82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADT 161 (316)
T ss_pred ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCc
Confidence 445556999999999999999888887777776788888887522 2344568888888877777778889988876553
Q ss_pred EEEEE----------eCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCce---EEEeee-------cCCCeEEEEEc
Q 001462 134 CIHTY----------KGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKL---LHDFKF-------HEGHIRSIDFH 193 (1074)
Q Consensus 134 ~v~~l----------~~h~~~VtsLafSPdG~~LaSgs~DGsI~VWDl~tgk~---v~~~~~-------h~g~ItsLafS 193 (1074)
.+... ...+.+...++|.|....|+.+-+-.-+.||.+..+.. ++.... .-..+.++.|+
T Consensus 162 ~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~ 241 (316)
T COG3204 162 TVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFN 241 (316)
T ss_pred cEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceec
Confidence 22221 12256788999999888888888877777776653321 111111 12346778888
Q ss_pred CC-CcEEEEEeCCCeEEEEECCCCcEEEeeCCCC---------CCeEEEEEecCCCEEEEEECCcEEE
Q 001462 194 PL-EFLLATGSADRTVKFWDLETFELIGSTRPEV---------TGVHAITFHPDGRTLFSGFDDNLKV 251 (1074)
Q Consensus 194 Pd-g~lLaTGS~DGtI~IWDl~tg~~i~t~~~~~---------~~ItsIafSPDG~~LasGsd~~I~V 251 (1074)
+. +.+|+.+..++.+.-.|.. |+.+..+.... ...-.++..++|...+++--+..+.
T Consensus 242 ~~~~~LLVLS~ESr~l~Evd~~-G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~lYIvSEPnlfy~ 308 (316)
T COG3204 242 AITNSLLVLSDESRRLLEVDLS-GEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGNLYIVSEPNLFYR 308 (316)
T ss_pred CCCCcEEEEecCCceEEEEecC-CCeeeeEEeccCCCCCcccCCCcceeEECCCCCEEEEecCCccee
Confidence 74 6677777778888777765 44343322111 1245677888877766665554333
|
|
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=96.91 E-value=1.3 Score=56.23 Aligned_cols=234 Identities=6% Similarity=-0.021 Sum_probs=118.0
Q ss_pred CEEEEEEecCCCcEEEEE-ECCC----eEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEEEEcC------CeEEEE
Q 001462 17 NVNCISIGKKACRFLITG-GDDQ----KVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGAST------GVIKLW 85 (1074)
Q Consensus 17 ~Vt~IafSPdg~~lLaTG-s~DG----tV~IWDl~t~k~l~sl~~hs~~ItsLafSpdg~~LatGs~D------G~I~VW 85 (1074)
.+..+.|+||| ++|+.+ ..+| .|++.|+.++..+....... -..++|.+|++.|+....+ ..|+.|
T Consensus 128 ~l~~~~~Spdg-~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~--~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h 204 (686)
T PRK10115 128 TLGGMAITPDN-TIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNV--EPSFVWANDSWTFYYVRKHPVTLLPYQVWRH 204 (686)
T ss_pred EEeEEEECCCC-CEEEEEecCCCcEEEEEEEEECCCCCCCCccccCc--ceEEEEeeCCCEEEEEEecCCCCCCCEEEEE
Confidence 46678899999 555544 3333 47888888776432221111 1469999999877665442 368888
Q ss_pred EcCCC--eeEEEEeCCCCCeE-EEEEcCCCCEEEEEEC---CCeEEEEECC--CCeEEEEEeCCCCCeEEEEEcCCCCEE
Q 001462 86 DLEES--KMVRTLTGHKSNCT-AVEFHPFGEFFASGCM---DTNLKIWDIR--KKGCIHTYKGHTRGINTIRFTPDGRWV 157 (1074)
Q Consensus 86 Dl~tg--k~i~tl~~h~~~Vt-sLafSPdg~~LaSgS~---DGsI~IWDi~--tg~~v~~l~~h~~~VtsLafSPdG~~L 157 (1074)
++.++ +....+........ .+..+.++++++..+. ++.+.+|+.. .+.....+.........+. +..+.++
T Consensus 205 ~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ly 283 (686)
T PRK10115 205 TIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-HYQHRFY 283 (686)
T ss_pred ECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-eCCCEEE
Confidence 88877 33334443333333 3333448887665543 4578888843 3332222322222222222 2223333
Q ss_pred EEEEC---CCeEEEEECCC-CceEEEeeec-C-CCeEEEEEcCCCcEEEEEeCCCeEEEE--ECCCCcEEEeeC-CCCCC
Q 001462 158 VSGGF---DNVVKVWDLTA-GKLLHDFKFH-E-GHIRSIDFHPLEFLLATGSADRTVKFW--DLETFELIGSTR-PEVTG 228 (1074)
Q Consensus 158 aSgs~---DGsI~VWDl~t-gk~v~~~~~h-~-g~ItsLafSPdg~lLaTGS~DGtI~IW--Dl~tg~~i~t~~-~~~~~ 228 (1074)
+.... ...|...++.. ++. ..+-.+ . ..+..+.+. .+.++++...+|.-+++ +...+ .+..+. .....
T Consensus 284 ~~tn~~~~~~~l~~~~~~~~~~~-~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~~~~~~-~~~~l~~~~~~~ 360 (686)
T PRK10115 284 LRSNRHGKNFGLYRTRVRDEQQW-EELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQINRKTR-EVIGIAFDDPAY 360 (686)
T ss_pred EEEcCCCCCceEEEecCCCcccC-eEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEEcCCCC-ceEEecCCCCce
Confidence 33222 23455556552 222 223333 2 357778777 34566666667765554 44333 333332 22222
Q ss_pred eEEEEEe--cCCCEEE-EEE----CCcEEEEEecCC
Q 001462 229 VHAITFH--PDGRTLF-SGF----DDNLKVYSWEPV 257 (1074)
Q Consensus 229 ItsIafS--PDG~~La-sGs----d~~I~Vwd~~s~ 257 (1074)
+..+.++ +++..++ ..+ -..+..||....
T Consensus 361 ~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~ 396 (686)
T PRK10115 361 VTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTG 396 (686)
T ss_pred EeeecccCCCCCceEEEEEecCCCCCEEEEEECCCC
Confidence 3333344 3444333 322 234666666554
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.64 Score=51.94 Aligned_cols=188 Identities=13% Similarity=0.119 Sum_probs=119.7
Q ss_pred eEEEEEcCCCCEEEEEEcCC--eEEEEEcCCCeeEEEEeCCC-CCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEE
Q 001462 61 VDSVAFDSAEVLVLAGASTG--VIKLWDLEESKMVRTLTGHK-SNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHT 137 (1074)
Q Consensus 61 ItsLafSpdg~~LatGs~DG--~I~VWDl~tgk~i~tl~~h~-~~VtsLafSPdg~~LaSgS~DGsI~IWDi~tg~~v~~ 137 (1074)
...+.|..+|.++-+.+.-| .|+.+|+.+|+......-.. .--..++.. +++.+...-.++...+||..+.+.+..
T Consensus 47 TQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~-~d~l~qLTWk~~~~f~yd~~tl~~~~~ 125 (264)
T PF05096_consen 47 TQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL-GDKLYQLTWKEGTGFVYDPNTLKKIGT 125 (264)
T ss_dssp EEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE-TTEEEEEESSSSEEEEEETTTTEEEEE
T ss_pred CccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE-CCEEEEEEecCCeEEEEccccceEEEE
Confidence 34678877787777777666 79999999998776554222 222344444 233344445689999999999998888
Q ss_pred EeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeeecC-----CCeEEEEEcCCCcEEEEEeCCCeEEEEE
Q 001462 138 YKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHE-----GHIRSIDFHPLEFLLATGSADRTVKFWD 212 (1074)
Q Consensus 138 l~~h~~~VtsLafSPdG~~LaSgs~DGsI~VWDl~tgk~v~~~~~h~-----g~ItsLafSPdg~lLaTGS~DGtI~IWD 212 (1074)
+.-. ..=+.++ .||..|+.......|+++|..+.+....+.... ..++-|-|. +|.+.|=.-....|...|
T Consensus 126 ~~y~-~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~~Id 201 (264)
T PF05096_consen 126 FPYP-GEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIVRID 201 (264)
T ss_dssp EE-S-SS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEEEEE
T ss_pred EecC-CcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEEEEe
Confidence 8643 4456777 467778887778899999998888777665322 235556665 576666666677888999
Q ss_pred CCCCcEEEeeCC---------------CCCCeEEEEEecCCCEEEEEECCcEEEEE
Q 001462 213 LETFELIGSTRP---------------EVTGVHAITFHPDGRTLFSGFDDNLKVYS 253 (1074)
Q Consensus 213 l~tg~~i~t~~~---------------~~~~ItsIafSPDG~~LasGsd~~I~Vwd 253 (1074)
..+|+....+.. ...-.+.|+|.|.+..|.+.+..=-++|.
T Consensus 202 p~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK~Wp~lye 257 (264)
T PF05096_consen 202 PETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGKLWPKLYE 257 (264)
T ss_dssp TTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEETT-SEEEE
T ss_pred CCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeCCCCceEE
Confidence 999988765411 12447899999987766665443223443
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.19 Score=56.07 Aligned_cols=205 Identities=19% Similarity=0.171 Sum_probs=126.2
Q ss_pred CCCeEEEEEcCCCC-EEEEEECCCe-EEEEECCCCeEEEEEeCCC--CCeEEEEEcCCCCEEEEEECC-----CeEEEEE
Q 001462 100 KSNCTAVEFHPFGE-FFASGCMDTN-LKIWDIRKKGCIHTYKGHT--RGINTIRFTPDGRWVVSGGFD-----NVVKVWD 170 (1074)
Q Consensus 100 ~~~VtsLafSPdg~-~LaSgS~DGs-I~IWDi~tg~~v~~l~~h~--~~VtsLafSPdG~~LaSgs~D-----GsI~VWD 170 (1074)
......|.|+|.-. -++.+-.-|+ ..++|.........+.... ...-.-+|+|||.+|+..-.| |.|-|||
T Consensus 67 paR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd 146 (366)
T COG3490 67 PARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYD 146 (366)
T ss_pred ccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEe
Confidence 34455688888644 4555544444 6788888777655553221 223345799999998875443 6899999
Q ss_pred CCCC-ceEEEeeecCCCeEEEEEcCCCcEEEEEeC------------------CCeEEEEECCCCcEEEeeCC----CCC
Q 001462 171 LTAG-KLLHDFKFHEGHIRSIDFHPLEFLLATGSA------------------DRTVKFWDLETFELIGSTRP----EVT 227 (1074)
Q Consensus 171 l~tg-k~v~~~~~h~g~ItsLafSPdg~lLaTGS~------------------DGtI~IWDl~tg~~i~t~~~----~~~ 227 (1074)
.+.+ +.+-++..|.-....+.|.+||..|+.+.. .-.+.+.|..+|+.+.+... +..
T Consensus 147 ~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~l 226 (366)
T COG3490 147 AREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQL 226 (366)
T ss_pred cccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhc
Confidence 8754 456778888877889999999999887642 11345556566666654432 345
Q ss_pred CeEEEEEecCCCEEEEEECCc------EEEEEecCCeeeeccccCC-------ceeeEEEec--CCCEEEEEECCCeEEE
Q 001462 228 GVHAITFHPDGRTLFSGFDDN------LKVYSWEPVICHDSVDMGW-------STLGDLCIN--DGKLLGCSFYRNSVGI 292 (1074)
Q Consensus 228 ~ItsIafSPDG~~LasGsd~~------I~Vwd~~s~~~~~~l~~~~-------s~~~~l~sp--DGklLAsgs~DGsV~I 292 (1074)
.|+.++..+||..++.+.-.+ ..|-....+.....++... ..+..+... +|-..+++-..+...|
T Consensus 227 SiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi 306 (366)
T COG3490 227 SIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVI 306 (366)
T ss_pred ceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEE
Confidence 688899999998887753211 2222233333333332221 112223332 4444555556677899
Q ss_pred EEcCCCceeeee
Q 001462 293 WVADVSHVEPYG 304 (1074)
Q Consensus 293 WDld~~~l~~~~ 304 (1074)
||..++.+....
T Consensus 307 ~da~tG~vv~~a 318 (366)
T COG3490 307 WDAATGAVVSEA 318 (366)
T ss_pred EEcCCCcEEecc
Confidence 999988876554
|
|
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.0053 Score=73.75 Aligned_cols=94 Identities=18% Similarity=0.185 Sum_probs=80.7
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeeecCCCeE-EEEEcCCCcEEEEEeCCCeEEEEECCCCcEEE
Q 001462 142 TRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIR-SIDFHPLEFLLATGSADRTVKFWDLETFELIG 220 (1074)
Q Consensus 142 ~~~VtsLafSPdG~~LaSgs~DGsI~VWDl~tgk~v~~~~~h~g~It-sLafSPdg~lLaTGS~DGtI~IWDl~tg~~i~ 220 (1074)
...+.-+.|+|.-.++|.+..+|.|.++.+. .+.++.+..+...++ +++|.|||++|++|-.||+|++.|+.++..+.
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~ 98 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV 98 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence 3457889999999999999999999999987 888889987777777 99999999999999999999999999998877
Q ss_pred eeC-CCCCCeEEEEEec
Q 001462 221 STR-PEVTGVHAITFHP 236 (1074)
Q Consensus 221 t~~-~~~~~ItsIafSP 236 (1074)
.+. .....|.++.|++
T Consensus 99 ~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 99 SFLFSVETDISKGIWDR 115 (665)
T ss_pred ccccccccchheeeccc
Confidence 742 2335678888874
|
|
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=96.76 E-value=1.3 Score=51.17 Aligned_cols=268 Identities=10% Similarity=0.043 Sum_probs=134.2
Q ss_pred CCCEEEEEEecCCCcEEEEEECCCeEEEEEC-CCCceEEEee----CCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCC
Q 001462 15 SANVNCISIGKKACRFLITGGDDQKVNLWAI-GKPTALMSLC----GLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEE 89 (1074)
Q Consensus 15 s~~Vt~IafSPdg~~lLaTGs~DGtV~IWDl-~t~k~l~sl~----~hs~~ItsLafSpdg~~LatGs~DG~I~VWDl~t 89 (1074)
...+.+|.|.... +-+++|. +|.| |.. +.++.-.... .....+.++.|..+ ..+++ +..|.|.. .-+.
T Consensus 45 ~~~l~~v~F~d~~-~g~avG~-~G~i--l~T~DgG~tW~~~~~~~~~~~~~l~~v~~~~~-~~~~~-G~~g~i~~-S~Dg 117 (334)
T PRK13684 45 EANLLDIAFTDPN-HGWLVGS-NRTL--LETNDGGETWEERSLDLPEENFRLISISFKGD-EGWIV-GQPSLLLH-TTDG 117 (334)
T ss_pred CCceEEEEEeCCC-cEEEEEC-CCEE--EEEcCCCCCceECccCCcccccceeeeEEcCC-cEEEe-CCCceEEE-ECCC
Confidence 5589999998554 5555554 4543 332 2232222211 12234677888643 33444 44454322 2222
Q ss_pred CeeEEEEe---CCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEE-eCCCCCeEEEEEcCCCCEEEEEECCCe
Q 001462 90 SKMVRTLT---GHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTY-KGHTRGINTIRFTPDGRWVVSGGFDNV 165 (1074)
Q Consensus 90 gk~i~tl~---~h~~~VtsLafSPdg~~LaSgS~DGsI~IWDi~tg~~v~~l-~~h~~~VtsLafSPdG~~LaSgs~DGs 165 (1074)
|+.-..+. ........+.....+..+++ +..|.|+.=+ ..|+.-..+ ......+..+.+.+++.+++++ ..|.
T Consensus 118 G~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~-g~~G~i~~S~-DgG~tW~~~~~~~~g~~~~i~~~~~g~~v~~g-~~G~ 194 (334)
T PRK13684 118 GKNWTRIPLSEKLPGSPYLITALGPGTAEMA-TNVGAIYRTT-DGGKNWEALVEDAAGVVRNLRRSPDGKYVAVS-SRGN 194 (334)
T ss_pred CCCCeEccCCcCCCCCceEEEEECCCcceee-eccceEEEEC-CCCCCceeCcCCCcceEEEEEECCCCeEEEEe-CCce
Confidence 33222221 01112222222222333333 3455443322 233322222 1224568899999988766554 4565
Q ss_pred EEEEECCCCceEEEe-eecCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCCcEEEeeCC----CCCCeEEEEEecCCCE
Q 001462 166 VKVWDLTAGKLLHDF-KFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRP----EVTGVHAITFHPDGRT 240 (1074)
Q Consensus 166 I~VWDl~tgk~v~~~-~~h~g~ItsLafSPdg~lLaTGS~DGtI~IWDl~tg~~i~t~~~----~~~~ItsIafSPDG~~ 240 (1074)
+..-.-..++.-... ..-...++++.+.+++..+++| ..|.+.+=+...+........ ....+..+.|.+++..
T Consensus 195 i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~ 273 (334)
T PRK13684 195 FYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPGEI 273 (334)
T ss_pred EEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCccccccCCccccccceeeEEEcCCCCE
Confidence 543211222222222 2234568899999998877765 457665433444443332221 1235788999999888
Q ss_pred EEEEECCcEEEEEecCCeeeecc----ccCCceeeEEEecCCCEEEEEECCCeEEEEEc
Q 001462 241 LFSGFDDNLKVYSWEPVICHDSV----DMGWSTLGDLCINDGKLLGCSFYRNSVGIWVA 295 (1074)
Q Consensus 241 LasGsd~~I~Vwd~~s~~~~~~l----~~~~s~~~~l~spDGklLAsgs~DGsV~IWDl 295 (1074)
+++|.++.+ ++..+.+..-... .........++..+++.+++| ..|.|.-|+-
T Consensus 274 ~~~G~~G~v-~~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G-~~G~il~~~~ 330 (334)
T PRK13684 274 WAGGGNGTL-LVSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLG-QRGVLLRYVG 330 (334)
T ss_pred EEEcCCCeE-EEeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEEC-CCceEEEecC
Confidence 888877654 3444433322222 122234455556666776655 7888887753
|
|
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.3 Score=62.34 Aligned_cols=193 Identities=12% Similarity=0.077 Sum_probs=122.6
Q ss_pred cEEEEEECCCeEEEEECCCCceEEEeeCCCCC--------eEEEEEcC----------------CCCEEEEEEcCCeEEE
Q 001462 29 RFLITGGDDQKVNLWAIGKPTALMSLCGLSSP--------VDSVAFDS----------------AEVLVLAGASTGVIKL 84 (1074)
Q Consensus 29 ~lLaTGs~DGtV~IWDl~t~k~l~sl~~hs~~--------ItsLafSp----------------dg~~LatGs~DG~I~V 84 (1074)
..|+.++.++.|.-.|..+|+.+..+...... ...+.+.. .+..++.++.||.|.-
T Consensus 195 g~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~LiA 274 (764)
T TIGR03074 195 DTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLIA 274 (764)
T ss_pred CEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEEE
Confidence 36777888899999999999988887532211 12233321 2347888899999999
Q ss_pred EEcCCCeeEEEEeCCCCCeE-------------EEEEcC--CCCEEEEEEC----------CCeEEEEECCCCeEEEEEe
Q 001462 85 WDLEESKMVRTLTGHKSNCT-------------AVEFHP--FGEFFASGCM----------DTNLKIWDIRKKGCIHTYK 139 (1074)
Q Consensus 85 WDl~tgk~i~tl~~h~~~Vt-------------sLafSP--dg~~LaSgS~----------DGsI~IWDi~tg~~v~~l~ 139 (1074)
.|.++|+.+..+.. .+.|. .+.-.| .+..+++|+. +|.|+-+|.++|+.+..+.
T Consensus 275 LDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~~ 353 (764)
T TIGR03074 275 LDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAWD 353 (764)
T ss_pred EECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEEe
Confidence 99999999877642 22110 011112 1345666643 6889999999999988775
Q ss_pred CC---------CCC--------e-EEEEEcCCCCEEEEEE------------------CCCeEEEEECCCCceEEEeeec
Q 001462 140 GH---------TRG--------I-NTIRFTPDGRWVVSGG------------------FDNVVKVWDLTAGKLLHDFKFH 183 (1074)
Q Consensus 140 ~h---------~~~--------V-tsLafSPdG~~LaSgs------------------~DGsI~VWDl~tgk~v~~~~~h 183 (1074)
.. .+. + ..+++.+...+++.+. ..+.|.-.|..+|+....++..
T Consensus 354 ~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~~ 433 (764)
T TIGR03074 354 PGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQTV 433 (764)
T ss_pred cCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEeccc
Confidence 21 000 1 2334444444333311 2356788899999998888742
Q ss_pred CCCe---------EEEEEcC-CCc---EEEEEeCCCeEEEEECCCCcEEEee
Q 001462 184 EGHI---------RSIDFHP-LEF---LLATGSADRTVKFWDLETFELIGST 222 (1074)
Q Consensus 184 ~g~I---------tsLafSP-dg~---lLaTGS~DGtI~IWDl~tg~~i~t~ 222 (1074)
...+ .-+.+.. +|+ .++.++.+|.++++|-++|+.+...
T Consensus 434 ~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~ 485 (764)
T TIGR03074 434 HHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPV 485 (764)
T ss_pred CCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeec
Confidence 1111 1122322 453 7888999999999999999988654
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.077 Score=65.50 Aligned_cols=211 Identities=10% Similarity=0.059 Sum_probs=103.6
Q ss_pred eEEEEEcCCCeeEE--EEeCCCCCeEEEEEcCCCCEEEEEECC------CeEEEEECCCCeEEEEEeCC---CCCeEEEE
Q 001462 81 VIKLWDLEESKMVR--TLTGHKSNCTAVEFHPFGEFFASGCMD------TNLKIWDIRKKGCIHTYKGH---TRGINTIR 149 (1074)
Q Consensus 81 ~I~VWDl~tgk~i~--tl~~h~~~VtsLafSPdg~~LaSgS~D------GsI~IWDi~tg~~v~~l~~h---~~~VtsLa 149 (1074)
.+..||..+++-.. .+..... -.+++.. ++..+++||.+ ..+..||..+..-. .+..- .... +++
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~-~~~~a~l-~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~-~~~~m~~~R~~~-~~~ 348 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHII-NYASAIV-DNEIIIAGGYNFNNPSLNKVYKINIENKIHV-ELPPMIKNRCRF-SLA 348 (557)
T ss_pred CEEEEeCCCCeEEECCCCCcccc-ceEEEEE-CCEEEEEcCCCCCCCccceEEEEECCCCeEe-eCCCCcchhhce-eEE
Confidence 46778877654221 1111111 1223332 56677777643 34788888766422 11111 1111 222
Q ss_pred EcCCCCEEEEEECCC-----eEEEEECCCCceEE--EeeecCCCeEEEEEcCCCcEEEEEeCCC----------------
Q 001462 150 FTPDGRWVVSGGFDN-----VVKVWDLTAGKLLH--DFKFHEGHIRSIDFHPLEFLLATGSADR---------------- 206 (1074)
Q Consensus 150 fSPdG~~LaSgs~DG-----sI~VWDl~tgk~v~--~~~~h~g~ItsLafSPdg~lLaTGS~DG---------------- 206 (1074)
.-+|+..+.||.++ .+..||..+.+-.. .+.........+.+ +|.+.+.|+.++
T Consensus 349 -~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~--~g~IYviGG~~~~~~~~~~~~~~~~~~~ 425 (557)
T PHA02713 349 -VIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVL--DQYIYIIGGRTEHIDYTSVHHMNSIDME 425 (557)
T ss_pred -EECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEE--CCEEEEEeCCCccccccccccccccccc
Confidence 22577778888754 47889987654221 11111111112222 577777777542
Q ss_pred -------eEEEEECCCCcEEEeeCCCCCCeEEEEEecCCCEEEEEE-CC------cEEEEEecC-Ceee--eccccCCce
Q 001462 207 -------TVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGF-DD------NLKVYSWEP-VICH--DSVDMGWST 269 (1074)
Q Consensus 207 -------tI~IWDl~tg~~i~t~~~~~~~ItsIafSPDG~~LasGs-d~------~I~Vwd~~s-~~~~--~~l~~~~s~ 269 (1074)
.+..||..+.+....-.-........+..-+|+..+.|+ ++ .+..||.+. .... ..+......
T Consensus 426 ~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~ 505 (557)
T PHA02713 426 EDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSA 505 (557)
T ss_pred ccccccceEEEECCCCCeEeecCCCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCccccc
Confidence 477788876543221111111111112223455555553 21 256677665 3332 223222222
Q ss_pred eeEEEecCCCEEEEEECCC--eEEEEEcCCCc
Q 001462 270 LGDLCINDGKLLGCSFYRN--SVGIWVADVSH 299 (1074)
Q Consensus 270 ~~~l~spDGklLAsgs~DG--sV~IWDld~~~ 299 (1074)
..+..-+|++.++|+.+| .+..||..+.+
T Consensus 506 -~~~~~~~~~iyv~Gg~~~~~~~e~yd~~~~~ 536 (557)
T PHA02713 506 -LHTILHDNTIMMLHCYESYMLQDTFNVYTYE 536 (557)
T ss_pred -ceeEEECCEEEEEeeecceeehhhcCccccc
Confidence 233345889999999888 66677665443
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=96.70 E-value=1 Score=50.36 Aligned_cols=181 Identities=11% Similarity=0.049 Sum_probs=116.4
Q ss_pred CEEEEEEecCCCcEEEEEECCC--eEEEEECCCCceEEEeeCCC-CCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeeE
Q 001462 17 NVNCISIGKKACRFLITGGDDQ--KVNLWAIGKPTALMSLCGLS-SPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMV 93 (1074)
Q Consensus 17 ~Vt~IafSPdg~~lLaTGs~DG--tV~IWDl~t~k~l~sl~~hs-~~ItsLafSpdg~~LatGs~DG~I~VWDl~tgk~i 93 (1074)
....+.|..+| .++-+.|.-| .|+.+|+.+++......-.. .---.++... ++.....-.+|...+||..+-+.+
T Consensus 46 FTQGL~~~~~g-~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~-d~l~qLTWk~~~~f~yd~~tl~~~ 123 (264)
T PF05096_consen 46 FTQGLEFLDDG-TLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILG-DKLYQLTWKEGTGFVYDPNTLKKI 123 (264)
T ss_dssp EEEEEEEEETT-EEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEET-TEEEEEESSSSEEEEEETTTTEEE
T ss_pred cCccEEecCCC-EEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEEC-CEEEEEEecCCeEEEEccccceEE
Confidence 45567787777 6666666666 68899999998776554222 1122344443 334444567899999999999988
Q ss_pred EEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeCC-----CCCeEEEEEcCCCCEEEEEECCCeEEE
Q 001462 94 RTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGH-----TRGINTIRFTPDGRWVVSGGFDNVVKV 168 (1074)
Q Consensus 94 ~tl~~h~~~VtsLafSPdg~~LaSgS~DGsI~IWDi~tg~~v~~l~~h-----~~~VtsLafSPdG~~LaSgs~DGsI~V 168 (1074)
.++.- ...=+.++ .+++.|+.......|+++|..+.+....+.-. -..+..+.|- +|...|=.-....|..
T Consensus 124 ~~~~y-~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~~ 199 (264)
T PF05096_consen 124 GTFPY-PGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIVR 199 (264)
T ss_dssp EEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEEE
T ss_pred EEEec-CCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEEE
Confidence 88863 44556676 46778888877888999999888777666422 2246677776 5655554556678899
Q ss_pred EECCCCceEEEeee------------c---CCCeEEEEEcCCCcEEEEEe
Q 001462 169 WDLTAGKLLHDFKF------------H---EGHIRSIDFHPLEFLLATGS 203 (1074)
Q Consensus 169 WDl~tgk~v~~~~~------------h---~g~ItsLafSPdg~lLaTGS 203 (1074)
.|..+|+.+..+.. + ..-.+.|+|+|....|++.+
T Consensus 200 Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 200 IDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp EETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred EeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 99999998877642 0 23478999998766555544
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.91 Score=51.95 Aligned_cols=226 Identities=15% Similarity=0.176 Sum_probs=110.9
Q ss_pred EEEEEEecCCCcEEEEEECCCeEEEEECCCCceEEEee---CCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeeE-
Q 001462 18 VNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLC---GLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMV- 93 (1074)
Q Consensus 18 Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~k~l~sl~---~hs~~ItsLafSpdg~~LatGs~DG~I~VWDl~tgk~i- 93 (1074)
.++|.|..+ ..+++| ..| +.+...+.++.-..+. ........+....++..++ ++..|.|+. ..+.|+.-
T Consensus 64 l~~I~f~~~--~g~ivG-~~g-~ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l-~~~~G~iy~-T~DgG~tW~ 137 (302)
T PF14870_consen 64 LNSISFDGN--EGWIVG-EPG-LLLHTTDGGKTWERVPLSSKLPGSPFGITALGDGSAEL-AGDRGAIYR-TTDGGKTWQ 137 (302)
T ss_dssp EEEEEEETT--EEEEEE-ETT-EEEEESSTTSS-EE----TT-SS-EEEEEEEETTEEEE-EETT--EEE-ESSTTSSEE
T ss_pred EEEEEecCC--ceEEEc-CCc-eEEEecCCCCCcEEeecCCCCCCCeeEEEEcCCCcEEE-EcCCCcEEE-eCCCCCCee
Confidence 566777543 344444 344 3344444555444432 1223334444444443333 344554322 22333322
Q ss_pred EEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC-
Q 001462 94 RTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLT- 172 (1074)
Q Consensus 94 ~tl~~h~~~VtsLafSPdg~~LaSgS~DGsI~IWDi~tg~~v~~l~~h~~~VtsLafSPdG~~LaSgs~DGsI~VWDl~- 172 (1074)
.......+.+..+..+++|++++++.....+.-||--...-...-......|..+.|.|++.+.+. ...|.|++=+..
T Consensus 138 ~~~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~-~~Gg~~~~s~~~~ 216 (302)
T PF14870_consen 138 AVVSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWML-ARGGQIQFSDDPD 216 (302)
T ss_dssp EEE-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEE-ETTTEEEEEE-TT
T ss_pred EcccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEE-eCCcEEEEccCCC
Confidence 223345577888999999999988765444557774332222222224577999999999876554 488999888722
Q ss_pred CCceEEE----eeecCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCCcEEEee---CCCCCCeEEEEEecCCCEEEEEE
Q 001462 173 AGKLLHD----FKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGST---RPEVTGVHAITFHPDGRTLFSGF 245 (1074)
Q Consensus 173 tgk~v~~----~~~h~g~ItsLafSPdg~lLaTGS~DGtI~IWDl~tg~~i~t~---~~~~~~ItsIafSPDG~~LasGs 245 (1074)
....... +......+..++|.+++.+.++|+ .|.+ +.....|+.-... ......++.|.|..+.+-++.|.
T Consensus 217 ~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg-~G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG~ 294 (302)
T PF14870_consen 217 DGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGG-SGTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVLGQ 294 (302)
T ss_dssp EEEEE---B-TTSS--S-EEEEEESSSS-EEEEES-TT-E-EEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE-S
T ss_pred CccccccccCCcccCceeeEEEEecCCCCEEEEeC-CccE-EEeCCCCccceECccccCCCCceEEEEEcCCCceEEECC
Confidence 2221111 111223478999999887777665 4543 4455555544433 23345688999998889999998
Q ss_pred CCcEEEE
Q 001462 246 DDNLKVY 252 (1074)
Q Consensus 246 d~~I~Vw 252 (1074)
++-|.-|
T Consensus 295 ~G~ll~~ 301 (302)
T PF14870_consen 295 DGVLLRY 301 (302)
T ss_dssp TTEEEEE
T ss_pred CcEEEEe
Confidence 8876544
|
|
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.0045 Score=44.38 Aligned_cols=39 Identities=23% Similarity=0.589 Sum_probs=35.3
Q ss_pred CceEEEEecCCCCEEEEEEecCCCcEEEEEECCCeEEEEE
Q 001462 5 GYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWA 44 (1074)
Q Consensus 5 G~~v~~L~gHs~~Vt~IafSPdg~~lLaTGs~DGtV~IWD 44 (1074)
+..+..+..|...|.++.|++++ .++++++.||.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDG-KYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCC-CEEEEecCCCeEEEcC
Confidence 56778889999999999999988 7899999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.0081 Score=72.20 Aligned_cols=94 Identities=16% Similarity=0.288 Sum_probs=79.9
Q ss_pred CCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeeEEEEeCCCCCeE-EEEEcCCCCEEEEEECCCeEEEEECCCCeEEE
Q 001462 58 SSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCT-AVEFHPFGEFFASGCMDTNLKIWDIRKKGCIH 136 (1074)
Q Consensus 58 s~~ItsLafSpdg~~LatGs~DG~I~VWDl~tgk~i~tl~~h~~~Vt-sLafSPdg~~LaSgS~DGsI~IWDi~tg~~v~ 136 (1074)
...|.-+.|+|.-.++|.+..+|.|.+..+. .+.++++.-++..++ +++|.|||+.|++|-.||+|.+.|+.++..+.
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~ 98 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV 98 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence 4567889999999999999999999999987 778888887777777 99999999999999999999999999988776
Q ss_pred EEe-CCCCCeEEEEEcC
Q 001462 137 TYK-GHTRGINTIRFTP 152 (1074)
Q Consensus 137 ~l~-~h~~~VtsLafSP 152 (1074)
... .....|.++-|.+
T Consensus 99 ~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 99 SFLFSVETDISKGIWDR 115 (665)
T ss_pred ccccccccchheeeccc
Confidence 631 2345677888864
|
|
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.057 Score=64.13 Aligned_cols=141 Identities=16% Similarity=0.210 Sum_probs=99.9
Q ss_pred CCEEE-EEEcCCeEEEEEcCCCeeEEEEeCCCCCeEEEEEcCCCC-------EEEEEECCCeEEEEECCCCeE--EEEEe
Q 001462 70 EVLVL-AGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGE-------FFASGCMDTNLKIWDIRKKGC--IHTYK 139 (1074)
Q Consensus 70 g~~La-tGs~DG~I~VWDl~tgk~i~tl~~h~~~VtsLafSPdg~-------~LaSgS~DGsI~IWDi~tg~~--v~~l~ 139 (1074)
.++|+ .+.....|+-.|++.|+.+.+++-+.. |.-+.+.|+.+ .-++|-.+..|+-||.+-... +...+
T Consensus 345 snlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q 423 (644)
T KOG2395|consen 345 SNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQ 423 (644)
T ss_pred cceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeee
Confidence 33333 455556788999999999999986665 77888888754 234556688899999874322 22222
Q ss_pred CC----CCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCc-eEEEeeecCCCeEEEEEcCCCcEEEEEeCCCeEEEEECC
Q 001462 140 GH----TRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGK-LLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLE 214 (1074)
Q Consensus 140 ~h----~~~VtsLafSPdG~~LaSgs~DGsI~VWDl~tgk-~v~~~~~h~g~ItsLafSPdg~lLaTGS~DGtI~IWDl~ 214 (1074)
+| .....|++-..+| ++++|+.+|.|++||- .+. ....+.+...+|..+..+.+|++|+..+ +.+|.+.++.
T Consensus 424 ~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t~ 500 (644)
T KOG2395|consen 424 SKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTYLLLIDTL 500 (644)
T ss_pred ccccccccccceeeecCCc-eEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEec-ccEEEEEEEe
Confidence 22 2235666666565 7999999999999996 443 3445667788999999999999987655 6788887764
|
|
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.16 Score=62.90 Aligned_cols=224 Identities=17% Similarity=0.225 Sum_probs=117.5
Q ss_pred CCCCEEEEEEcCC------eEEEEEcCCCeeEEEEeC-CCCCeEEEEEcCCCCEEEEEECC------CeEEEEECCCCeE
Q 001462 68 SAEVLVLAGASTG------VIKLWDLEESKMVRTLTG-HKSNCTAVEFHPFGEFFASGCMD------TNLKIWDIRKKGC 134 (1074)
Q Consensus 68 pdg~~LatGs~DG------~I~VWDl~tgk~i~tl~~-h~~~VtsLafSPdg~~LaSgS~D------GsI~IWDi~tg~~ 134 (1074)
..+.++++||.++ .+..+|..++.-.....- ....-.++++. ++..+++||.| ..+..||....+-
T Consensus 283 ~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W 361 (571)
T KOG4441|consen 283 VSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQW 361 (571)
T ss_pred CCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCce
Confidence 3456777777763 577888877643222111 22223344444 46788888888 3578888876662
Q ss_pred EEE--EeCCCCCeEEEEEcCCCCEEEEEECCC-----eEEEEECCCCceE--EEeeecCCCeEEEEEcCCCcEEEEEeCC
Q 001462 135 IHT--YKGHTRGINTIRFTPDGRWVVSGGFDN-----VVKVWDLTAGKLL--HDFKFHEGHIRSIDFHPLEFLLATGSAD 205 (1074)
Q Consensus 135 v~~--l~~h~~~VtsLafSPdG~~LaSgs~DG-----sI~VWDl~tgk~v--~~~~~h~g~ItsLafSPdg~lLaTGS~D 205 (1074)
... +...........+ +|...++||.|| .+-.||..+.+-. ..+...........+ +|.+.++||.+
T Consensus 362 ~~~a~M~~~R~~~~v~~l--~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~--~g~iYi~GG~~ 437 (571)
T KOG4441|consen 362 TPVAPMNTKRSDFGVAVL--DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVL--GGKLYIIGGGD 437 (571)
T ss_pred eccCCccCccccceeEEE--CCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEE--CCEEEEEcCcC
Confidence 221 1111111111222 577888999887 4777887665422 111111111122222 57888888865
Q ss_pred C------eEEEEECCCCcEEE--eeCCCCCCeEEEEEecCCCEEEEE-ECC-----cEEEEEecCCeeeeccccCCce-e
Q 001462 206 R------TVKFWDLETFELIG--STRPEVTGVHAITFHPDGRTLFSG-FDD-----NLKVYSWEPVICHDSVDMGWST-L 270 (1074)
Q Consensus 206 G------tI~IWDl~tg~~i~--t~~~~~~~ItsIafSPDG~~LasG-sd~-----~I~Vwd~~s~~~~~~l~~~~s~-~ 270 (1074)
+ ++..||..+..... .+....... .++.. ++.+.++| .++ .+..||.........-.+.... .
T Consensus 438 ~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~-g~a~~-~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~ 515 (571)
T KOG4441|consen 438 GSSNCLNSVECYDPETNTWTLIAPMNTRRSGF-GVAVL-NGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSA 515 (571)
T ss_pred CCccccceEEEEcCCCCceeecCCcccccccc-eEEEE-CCEEEEECCccCCCccceEEEEcCCCCceeEcccCcccccc
Confidence 4 47788887654332 222222222 23333 44555554 443 2667776665443332222221 1
Q ss_pred eEEEecCCCEEEEEECCC-----eEEEEEcCCC
Q 001462 271 GDLCINDGKLLGCSFYRN-----SVGIWVADVS 298 (1074)
Q Consensus 271 ~~l~spDGklLAsgs~DG-----sV~IWDld~~ 298 (1074)
..++.-++++.++|++|| +|..||....
T Consensus 516 ~g~~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d 548 (571)
T KOG4441|consen 516 VGVVVLGGKLYAVGGFDGNNNLNTVECYDPETD 548 (571)
T ss_pred ccEEEECCEEEEEecccCccccceeEEcCCCCC
Confidence 223445778888888776 4666755443
|
|
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.92 Score=53.79 Aligned_cols=217 Identities=16% Similarity=0.186 Sum_probs=106.2
Q ss_pred cEEEEEE-CCCeEEEEECC----CCceEEEeeC---CC----CCeEEEEEcCCCCEEEEEEc------CCeEEEEEcCCC
Q 001462 29 RFLITGG-DDQKVNLWAIG----KPTALMSLCG---LS----SPVDSVAFDSAEVLVLAGAS------TGVIKLWDLEES 90 (1074)
Q Consensus 29 ~lLaTGs-~DGtV~IWDl~----t~k~l~sl~~---hs----~~ItsLafSpdg~~LatGs~------DG~I~VWDl~tg 90 (1074)
++|+..+ .++.|+|+|+. ..+..+.+.. +. .....+..-|+|..++++-. .|-+.++|-++.
T Consensus 88 r~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf 167 (461)
T PF05694_consen 88 RYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGETF 167 (461)
T ss_dssp -EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT-
T ss_pred CcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCccc
Confidence 5666666 67899999986 2333444431 11 12233444578888877432 356889998877
Q ss_pred eeEEEEeCC---CCCeEEEEEcCCCCEEEEEEC--------------------CCeEEEEECCCCeEEEEEeCCCC--Ce
Q 001462 91 KMVRTLTGH---KSNCTAVEFHPFGEFFASGCM--------------------DTNLKIWDIRKKGCIHTYKGHTR--GI 145 (1074)
Q Consensus 91 k~i~tl~~h---~~~VtsLafSPdg~~LaSgS~--------------------DGsI~IWDi~tg~~v~~l~~h~~--~V 145 (1074)
+........ ...-+.+.|.|..+.+++... ..++.+||+.+.+.++.+.-... .+
T Consensus 168 ~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~p 247 (461)
T PF05694_consen 168 EVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMP 247 (461)
T ss_dssp -EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEE
T ss_pred cccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCce
Confidence 777666543 234577889998888888642 25699999999999999875433 35
Q ss_pred EEEEEcCC--CCEEEE-EECCCeEEEEEC-CCCc----eEEEeeec-----------------CCCeEEEEEcCCCcEEE
Q 001462 146 NTIRFTPD--GRWVVS-GGFDNVVKVWDL-TAGK----LLHDFKFH-----------------EGHIRSIDFHPLEFLLA 200 (1074)
Q Consensus 146 tsLafSPd--G~~LaS-gs~DGsI~VWDl-~tgk----~v~~~~~h-----------------~g~ItsLafSPdg~lLa 200 (1074)
..+.|..+ ..+-++ +...+.|..|-- ..++ .+..+... .+-|+.|.++.|.++|+
T Consensus 248 LEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLY 327 (461)
T PF05694_consen 248 LEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLY 327 (461)
T ss_dssp EEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEE
T ss_pred EEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEE
Confidence 56777654 333333 334455555533 3442 12222110 23478999999999998
Q ss_pred EEe-CCCeEEEEECCCC---cEEEeeC----------------CCCCCeEEEEEecCCCEEEEEE
Q 001462 201 TGS-ADRTVKFWDLETF---ELIGSTR----------------PEVTGVHAITFHPDGRTLFSGF 245 (1074)
Q Consensus 201 TGS-~DGtI~IWDl~tg---~~i~t~~----------------~~~~~ItsIafSPDG~~LasGs 245 (1074)
+.+ .+|.|+.||+..- ++..+.. ...++..-+.+|-||+.|++..
T Consensus 328 vs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 328 VSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTN 392 (461)
T ss_dssp EEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE-
T ss_pred EEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEe
Confidence 877 5899999999752 2222211 1122346677888888777653
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >COG1520 FOG: WD40-like repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=96.42 E-value=2.6 Score=49.15 Aligned_cols=193 Identities=17% Similarity=0.088 Sum_probs=114.9
Q ss_pred EEEEEECCCeEEEEECCCCceEEEeeCCC--CCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeeEEEEeCCC-CCeEEE
Q 001462 30 FLITGGDDQKVNLWAIGKPTALMSLCGLS--SPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHK-SNCTAV 106 (1074)
Q Consensus 30 lLaTGs~DGtV~IWDl~t~k~l~sl~~hs--~~ItsLafSpdg~~LatGs~DG~I~VWDl~tgk~i~tl~~h~-~~VtsL 106 (1074)
.++++..+|.|.-.|..++..+....... ..+..-.+..+|+ |++++.+|.+..+|..+|+.+....... ..+..-
T Consensus 70 ~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~~ 148 (370)
T COG1520 70 TVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGGSPYYASP 148 (370)
T ss_pred eEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCCCeEEecC
Confidence 45666788888888888888665433221 2222222333665 7788889999999998999988887555 111222
Q ss_pred EEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeCCCC---CeEEEEEcCCCCEEEEEEC--CCeEEEEECCCCceEEEee
Q 001462 107 EFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTR---GINTIRFTPDGRWVVSGGF--DNVVKVWDLTAGKLLHDFK 181 (1074)
Q Consensus 107 afSPdg~~LaSgS~DGsI~IWDi~tg~~v~~l~~h~~---~VtsLafSPdG~~LaSgs~--DGsI~VWDl~tgk~v~~~~ 181 (1074)
.+-.++ .++.++.+|+++..|..+|.....+..... .+..--...++ .++.+.. ++.+.-+|..+|......+
T Consensus 149 ~v~~~~-~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~vy~~~~~~~~~~~a~~~~~G~~~w~~~ 226 (370)
T COG1520 149 PVVGDG-TVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASG-TVYVGSDGYDGILYALNAEDGTLKWSQK 226 (370)
T ss_pred cEEcCc-EEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecc-eEEEecCCCcceEEEEEccCCcEeeeee
Confidence 222233 334444789999999988988777553221 11110111133 3455554 6678888888888877743
Q ss_pred ecC----CCeEEE-EEcC----CCcEEEEEeCCCeEEEEECCCCcEEEeeCCC
Q 001462 182 FHE----GHIRSI-DFHP----LEFLLATGSADRTVKFWDLETFELIGSTRPE 225 (1074)
Q Consensus 182 ~h~----g~ItsL-afSP----dg~lLaTGS~DGtI~IWDl~tg~~i~t~~~~ 225 (1074)
.+. ..+... .+.. .+.-++.++.++.+...|..+++.+..+...
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~~~~ 279 (370)
T COG1520 227 VSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWSFPAG 279 (370)
T ss_pred eecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCCceEEEEecc
Confidence 211 111001 1110 1223456677888999999999998887663
|
|
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.26 Score=48.13 Aligned_cols=101 Identities=14% Similarity=0.209 Sum_probs=69.7
Q ss_pred EEEEEEe---cCCCcEEEEEECCCeEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeeEE
Q 001462 18 VNCISIG---KKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVR 94 (1074)
Q Consensus 18 Vt~IafS---Pdg~~lLaTGs~DGtV~IWDl~t~k~l~sl~~hs~~ItsLafSpdg~~LatGs~DG~I~VWDl~tgk~i~ 94 (1074)
|+++++. .+|...|++|+.|..|++|+- ...+..+.. ...|.+++-... ..++.+..+|+|-+|+- ...++
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~e-~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~--~~RlW 75 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEITE-TDKVTSLCSLGG-GRFAYALANGTVGVYDR--SQRLW 75 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEec-ccceEEEEEcCC-CEEEEEecCCEEEEEeC--cceee
Confidence 5566554 466689999999999999983 455566553 556777776655 56888899999999974 44455
Q ss_pred EEeCCCCCeEEEEEcC-CC---CEEEEEECCCeEE
Q 001462 95 TLTGHKSNCTAVEFHP-FG---EFFASGCMDTNLK 125 (1074)
Q Consensus 95 tl~~h~~~VtsLafSP-dg---~~LaSgS~DGsI~ 125 (1074)
..+... .+.++.+.. ++ .-|++|-.+|.|-
T Consensus 76 RiKSK~-~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 76 RIKSKN-QVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eeccCC-CeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 565433 356665543 32 2688888888764
|
|
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.069 Score=67.79 Aligned_cols=98 Identities=23% Similarity=0.383 Sum_probs=73.8
Q ss_pred cEEEEEECCCeEEEEECCCC-ceEEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeeEEEEeCCCCCeEEE-
Q 001462 29 RFLITGGDDQKVNLWAIGKP-TALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAV- 106 (1074)
Q Consensus 29 ~lLaTGs~DGtV~IWDl~t~-k~l~sl~~hs~~ItsLafSpdg~~LatGs~DG~I~VWDl~tgk~i~tl~~h~~~VtsL- 106 (1074)
.+++.|+..|.|-+.|+... .....-..-.++|++++|+.+|..++.|-.+|.|.+||...++..+.+..|..+...+
T Consensus 100 ~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi 179 (1206)
T KOG2079|consen 100 VPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVI 179 (1206)
T ss_pred eeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEE
Confidence 46888888888888887442 2222222345799999999999999999999999999999999999888776665544
Q ss_pred --EEcCCCCEEEEEECCCeEEEEE
Q 001462 107 --EFHPFGEFFASGCMDTNLKIWD 128 (1074)
Q Consensus 107 --afSPdg~~LaSgS~DGsI~IWD 128 (1074)
.|..++..++++...|. +|.
T Consensus 180 ~v~~t~~nS~llt~D~~Gs--f~~ 201 (1206)
T KOG2079|consen 180 FVGRTSQNSKLLTSDTGGS--FWK 201 (1206)
T ss_pred EEEEeCCCcEEEEccCCCc--eEE
Confidence 44455667888877776 454
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.23 Score=61.45 Aligned_cols=179 Identities=11% Similarity=0.110 Sum_probs=87.1
Q ss_pred CCCEEEEEEcC------CeEEEEEcCCCeeEEEEeC---CCCCeEEEEEcCCCCEEEEEECCC-----eEEEEECCCCeE
Q 001462 69 AEVLVLAGAST------GVIKLWDLEESKMVRTLTG---HKSNCTAVEFHPFGEFFASGCMDT-----NLKIWDIRKKGC 134 (1074)
Q Consensus 69 dg~~LatGs~D------G~I~VWDl~tgk~i~tl~~---h~~~VtsLafSPdg~~LaSgS~DG-----sI~IWDi~tg~~ 134 (1074)
++..+++||.+ ..+..||..++.-. .+.. ..... +++ .-+|+.++.||.++ .+..||..+..-
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~-~~~~m~~~R~~~-~~~-~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W 379 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHV-ELPPMIKNRCRF-SLA-VIDDTIYAIGGQNGTNVERTIECYTMGDDKW 379 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeEe-eCCCCcchhhce-eEE-EECCEEEEECCcCCCCCCceEEEEECCCCeE
Confidence 56667777753 34778888766421 1111 11111 222 22577778887654 488899876542
Q ss_pred EE--EEeCCCCCeEEEEEcCCCCEEEEEECCC-----------------------eEEEEECCCCceEE--EeeecCCCe
Q 001462 135 IH--TYKGHTRGINTIRFTPDGRWVVSGGFDN-----------------------VVKVWDLTAGKLLH--DFKFHEGHI 187 (1074)
Q Consensus 135 v~--~l~~h~~~VtsLafSPdG~~LaSgs~DG-----------------------sI~VWDl~tgk~v~--~~~~h~g~I 187 (1074)
.. .+.........+.+ +|+..+.||.++ .+..||..+.+-.. .+.......
T Consensus 380 ~~~~~mp~~r~~~~~~~~--~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~ 457 (557)
T PHA02713 380 KMLPDMPIALSSYGMCVL--DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRP 457 (557)
T ss_pred EECCCCCcccccccEEEE--CCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcccccC
Confidence 21 11111111112222 577777777653 47778877654321 111111111
Q ss_pred EEEEEcCCCcEEEEEeCCC------eEEEEECCC-Cc--EEEeeCCCCCCeEEEEEecCCCEEEEEE-CC--cEEEEEec
Q 001462 188 RSIDFHPLEFLLATGSADR------TVKFWDLET-FE--LIGSTRPEVTGVHAITFHPDGRTLFSGF-DD--NLKVYSWE 255 (1074)
Q Consensus 188 tsLafSPdg~lLaTGS~DG------tI~IWDl~t-g~--~i~t~~~~~~~ItsIafSPDG~~LasGs-d~--~I~Vwd~~ 255 (1074)
+++ .-++.+.+.|+.++ .+..||..+ .+ .+..+....... +++.. +|++.++|+ ++ .+..||..
T Consensus 458 -~~~-~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~-~~~~~-~~~iyv~Gg~~~~~~~e~yd~~ 533 (557)
T PHA02713 458 -GVV-SHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSAL-HTILH-DNTIMMLHCYESYMLQDTFNVY 533 (557)
T ss_pred -cEE-EECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccc-eeEEE-CCEEEEEeeecceeehhhcCcc
Confidence 122 22467777776542 467899886 33 233332222222 22222 566666664 33 24445544
Q ss_pred C
Q 001462 256 P 256 (1074)
Q Consensus 256 s 256 (1074)
+
T Consensus 534 ~ 534 (557)
T PHA02713 534 T 534 (557)
T ss_pred c
Confidence 3
|
|
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.48 Score=51.71 Aligned_cols=210 Identities=16% Similarity=0.179 Sum_probs=119.3
Q ss_pred EecCCCcEEEEEECCCeEEEEECCCCceEE-EeeCCCCCeEEEEEcCCC---CEEEEEEcCCeEEEEE--cCCCeeEEEE
Q 001462 23 IGKKACRFLITGGDDQKVNLWAIGKPTALM-SLCGLSSPVDSVAFDSAE---VLVLAGASTGVIKLWD--LEESKMVRTL 96 (1074)
Q Consensus 23 fSPdg~~lLaTGs~DGtV~IWDl~t~k~l~-sl~~hs~~ItsLafSpdg---~~LatGs~DG~I~VWD--l~tgk~i~tl 96 (1074)
|.-....++.+--..|.|.-||+...+... .+.+ .+...+.|--.+ .+.+.++..-.|.-|| .+.....+++
T Consensus 22 w~~~~~sLl~VDi~ag~v~r~D~~qn~v~ra~ie~--p~~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~ 99 (310)
T KOG4499|consen 22 WDVERQSLLYVDIEAGEVHRYDIEQNKVYRAKIEG--PPSAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTL 99 (310)
T ss_pred eEEecceEEEEEeccCceehhhhhhhheEEEEEec--CcceeEEEEecCCCceEEEeecceEEEEEcccccceeeeeeec
Confidence 333333566666666777778886543322 2222 223334442222 2333333333455666 3333444442
Q ss_pred eC-----CCCCeEEEEEcCCCCEEEEEEC---------CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEE-EE
Q 001462 97 TG-----HKSNCTAVEFHPFGEFFASGCM---------DTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVS-GG 161 (1074)
Q Consensus 97 ~~-----h~~~VtsLafSPdg~~LaSgS~---------DGsI~IWDi~tg~~v~~l~~h~~~VtsLafSPdG~~LaS-gs 161 (1074)
.. ......+-..+|+|+|++-.-. .|.++.|-.. ..+..+...-.--..++|+.+.+.+.. -+
T Consensus 100 ~ev~~d~kknR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~--h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDs 177 (310)
T KOG4499|consen 100 FEVQPDRKKNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAG--HQVELIWNCVGISNGLAWDSDAKKFYYIDS 177 (310)
T ss_pred cccCchHHhcccccCccCCCCceeeeeeccccccccccccEEEEeccC--CCceeeehhccCCccccccccCcEEEEEcc
Confidence 21 1334556678899998443221 2455555432 122222223333467889888776654 45
Q ss_pred CCCeEEEEE--CCCCce-----EEEeee----cCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCCcEEEeeCCCCCCeE
Q 001462 162 FDNVVKVWD--LTAGKL-----LHDFKF----HEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVH 230 (1074)
Q Consensus 162 ~DGsI~VWD--l~tgk~-----v~~~~~----h~g~ItsLafSPdg~lLaTGS~DGtI~IWDl~tg~~i~t~~~~~~~It 230 (1074)
.+-.|.-|| ..+|.. +..++. ..-..-.+++.-.|++.++.-..|+|..+|..+|+.+.++......|+
T Consensus 178 ln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qit 257 (310)
T KOG4499|consen 178 LNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQIT 257 (310)
T ss_pred CceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceE
Confidence 567887787 555542 333331 111123455566788888888889999999999999999988888999
Q ss_pred EEEEec
Q 001462 231 AITFHP 236 (1074)
Q Consensus 231 sIafSP 236 (1074)
+++|--
T Consensus 258 sccFgG 263 (310)
T KOG4499|consen 258 SCCFGG 263 (310)
T ss_pred EEEecC
Confidence 999964
|
|
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.061 Score=68.23 Aligned_cols=101 Identities=18% Similarity=0.338 Sum_probs=75.1
Q ss_pred CCCEEEEEEcCCeEEEEEcCCCe-eEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeCCCCCeEE
Q 001462 69 AEVLVLAGASTGVIKLWDLEESK-MVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINT 147 (1074)
Q Consensus 69 dg~~LatGs~DG~I~VWDl~tgk-~i~tl~~h~~~VtsLafSPdg~~LaSgS~DGsI~IWDi~tg~~v~~l~~h~~~Vts 147 (1074)
.+..++.|+..|++...|+...- ....-....++|.+++|+.+|..++.|-.+|.|.+||+..++.++.+..+..+...
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~ 177 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTG 177 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccce
Confidence 45678899999999999986531 11222234678999999999999999999999999999999998888766665444
Q ss_pred E---EEcCCCCEEEEEECCCeEEEEEC
Q 001462 148 I---RFTPDGRWVVSGGFDNVVKVWDL 171 (1074)
Q Consensus 148 L---afSPdG~~LaSgs~DGsI~VWDl 171 (1074)
+ .+..++..++++...|. +|.+
T Consensus 178 vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 178 VIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred EEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 4 34445556777777775 4543
|
|
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.065 Score=63.65 Aligned_cols=137 Identities=16% Similarity=0.169 Sum_probs=97.5
Q ss_pred EEEECCCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCE-------EEEEECCCeEEEEECCCCce--EEEeeecC--
Q 001462 116 ASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRW-------VVSGGFDNVVKVWDLTAGKL--LHDFKFHE-- 184 (1074)
Q Consensus 116 aSgS~DGsI~IWDi~tg~~v~~l~~h~~~VtsLafSPdG~~-------LaSgs~DGsI~VWDl~tgk~--v~~~~~h~-- 184 (1074)
..+.....|+-.|++.|+.+..++-+.. |.-+.+.|+.+. -+.|-.+..|.-||.+-... +...++|.
T Consensus 350 ~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~ 428 (644)
T KOG2395|consen 350 MDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYS 428 (644)
T ss_pred eCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccccc
Confidence 3444456699999999999999987766 777788886541 23466788899999874322 22222222
Q ss_pred --CCeEEEEEcCCCcEEEEEeCCCeEEEEECCCCcEE-EeeCCCCCCeEEEEEecCCCEEEEEECCcEEEEEec
Q 001462 185 --GHIRSIDFHPLEFLLATGSADRTVKFWDLETFELI-GSTRPEVTGVHAITFHPDGRTLFSGFDDNLKVYSWE 255 (1074)
Q Consensus 185 --g~ItsLafSPdg~lLaTGS~DGtI~IWDl~tg~~i-~t~~~~~~~ItsIafSPDG~~LasGsd~~I~Vwd~~ 255 (1074)
....|.+-..+| ++++|+.+|.|++||- .+... ..+.+...+|..+..+.+|++|++.++..+.+.+..
T Consensus 429 ~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~tyLlLi~t~ 500 (644)
T KOG2395|consen 429 TKNNFSCFATTESG-YIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATCKTYLLLIDTL 500 (644)
T ss_pred cccccceeeecCCc-eEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEecccEEEEEEEe
Confidence 234555555444 7888999999999997 44333 345666778999999999999999999987777753
|
|
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=96.13 E-value=1.1 Score=57.53 Aligned_cols=112 Identities=15% Similarity=0.189 Sum_probs=76.5
Q ss_pred CCEEEEEEcCCeEEEEEcCCCeeEEEEeCCCCC--------eEEEEEcC----------------CCCEEEEEECCCeEE
Q 001462 70 EVLVLAGASTGVIKLWDLEESKMVRTLTGHKSN--------CTAVEFHP----------------FGEFFASGCMDTNLK 125 (1074)
Q Consensus 70 g~~LatGs~DG~I~VWDl~tgk~i~tl~~h~~~--------VtsLafSP----------------dg~~LaSgS~DGsI~ 125 (1074)
+..|++++.++.|.-.|..+|+.+..+...... +..+.+.. ++..++.++.|+.|+
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 557778888899999999999998887633211 22233321 244788888999999
Q ss_pred EEECCCCeEEEEEeCCCCCe-------------EEEEEcC--CCCEEEEEEC----------CCeEEEEECCCCceEEEe
Q 001462 126 IWDIRKKGCIHTYKGHTRGI-------------NTIRFTP--DGRWVVSGGF----------DNVVKVWDLTAGKLLHDF 180 (1074)
Q Consensus 126 IWDi~tg~~v~~l~~h~~~V-------------tsLafSP--dG~~LaSgs~----------DGsI~VWDl~tgk~v~~~ 180 (1074)
-.|.++|+.+..+.. .+.+ ..+.-.| .+..+++|+. +|.|+-+|..+|+.+..+
T Consensus 274 ALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~ 352 (764)
T TIGR03074 274 ALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW 352 (764)
T ss_pred EEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence 999999998877642 1111 1111122 2345666643 688999999999999888
Q ss_pred ee
Q 001462 181 KF 182 (1074)
Q Consensus 181 ~~ 182 (1074)
..
T Consensus 353 ~~ 354 (764)
T TIGR03074 353 DP 354 (764)
T ss_pred ec
Confidence 63
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.24 Score=61.34 Aligned_cols=184 Identities=16% Similarity=0.189 Sum_probs=98.9
Q ss_pred cEEEEEECCC------eEEEEECCCCceEEEeeC-CCCCeEEEEEcCCCCEEEEEEcC-C-----eEEEEEcCCCeeEE-
Q 001462 29 RFLITGGDDQ------KVNLWAIGKPTALMSLCG-LSSPVDSVAFDSAEVLVLAGAST-G-----VIKLWDLEESKMVR- 94 (1074)
Q Consensus 29 ~lLaTGs~DG------tV~IWDl~t~k~l~sl~~-hs~~ItsLafSpdg~~LatGs~D-G-----~I~VWDl~tgk~i~- 94 (1074)
.+++.||.++ .+..||..++.......- ....-.+++.. ++...++||.+ | .+..||...++-..
T Consensus 286 ~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~ 364 (571)
T KOG4441|consen 286 KLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPV 364 (571)
T ss_pred eEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCceecc
Confidence 5777777763 577888766633322211 22223344443 45777888888 3 57788877665221
Q ss_pred -EEeCCCCCeEEEEEcCCCCEEEEEECCCe-----EEEEECCCCeEE--EEEeCCCCCeEEEEEcCCCCEEEEEECCC--
Q 001462 95 -TLTGHKSNCTAVEFHPFGEFFASGCMDTN-----LKIWDIRKKGCI--HTYKGHTRGINTIRFTPDGRWVVSGGFDN-- 164 (1074)
Q Consensus 95 -tl~~h~~~VtsLafSPdg~~LaSgS~DGs-----I~IWDi~tg~~v--~~l~~h~~~VtsLafSPdG~~LaSgs~DG-- 164 (1074)
.+........ ++.. +|...++||.||. |-.||..+.+-. ..+...........+ +|.+.++||.++
T Consensus 365 a~M~~~R~~~~-v~~l-~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~--~g~iYi~GG~~~~~ 440 (571)
T KOG4441|consen 365 APMNTKRSDFG-VAVL-DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVL--GGKLYIIGGGDGSS 440 (571)
T ss_pred CCccCccccce-eEEE-CCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEE--CCEEEEEcCcCCCc
Confidence 1111111111 2222 5788889988864 777777654421 111111111222222 577778888654
Q ss_pred ----eEEEEECCCCceEE--EeeecCCCeEEEEEcCCCcEEEEEeCCCe-----EEEEECCCCcEE
Q 001462 165 ----VVKVWDLTAGKLLH--DFKFHEGHIRSIDFHPLEFLLATGSADRT-----VKFWDLETFELI 219 (1074)
Q Consensus 165 ----sI~VWDl~tgk~v~--~~~~h~g~ItsLafSPdg~lLaTGS~DGt-----I~IWDl~tg~~i 219 (1074)
.+..||..+++-.. .+........ ++. -++.+.+.|+.|+. |..||..+.+..
T Consensus 441 ~~l~sve~YDP~t~~W~~~~~M~~~R~~~g-~a~-~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~ 504 (571)
T KOG4441|consen 441 NCLNSVECYDPETNTWTLIAPMNTRRSGFG-VAV-LNGKIYVVGGFDGTSALSSVERYDPETNQWT 504 (571)
T ss_pred cccceEEEEcCCCCceeecCCcccccccce-EEE-ECCEEEEECCccCCCccceEEEEcCCCCcee
Confidence 57788887765322 2221111122 222 25778888887763 777888765543
|
|
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.018 Score=41.18 Aligned_cols=39 Identities=44% Similarity=0.733 Sum_probs=34.0
Q ss_pred CceEEEeeecCCCeEEEEEcCCCcEEEEEeCCCeEEEEE
Q 001462 174 GKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWD 212 (1074)
Q Consensus 174 gk~v~~~~~h~g~ItsLafSPdg~lLaTGS~DGtI~IWD 212 (1074)
++....+..|...|.++.|++.+.++++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 345666777888999999999999999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.48 Score=57.45 Aligned_cols=150 Identities=15% Similarity=0.223 Sum_probs=94.1
Q ss_pred CCCeEEEEEcCCCCEEEEEE---CCCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCC----CCEEEEEECCCeEEEEECC
Q 001462 100 KSNCTAVEFHPFGEFFASGC---MDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPD----GRWVVSGGFDNVVKVWDLT 172 (1074)
Q Consensus 100 ~~~VtsLafSPdg~~LaSgS---~DGsI~IWDi~tg~~v~~l~~h~~~VtsLafSPd----G~~LaSgs~DGsI~VWDl~ 172 (1074)
-.++..++|. ||+.++-.. .+|.+++=| ...+..| ..|..+.|.|- ...|++.-....|.||.+.
T Consensus 19 iHPvhGlaWT-DGkqVvLT~L~l~~gE~kfGd---s~viGqF----EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~ 90 (671)
T PF15390_consen 19 IHPVHGLAWT-DGKQVVLTDLQLHNGEPKFGD---SKVIGQF----EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLC 90 (671)
T ss_pred hccccceEec-CCCEEEEEeeeeeCCccccCC---ccEeecc----ceeeeeeecCcccCCCCceEEEeccceEEEEEec
Confidence 3468889998 565444332 244444333 2233333 45889999984 2245555678899999875
Q ss_pred -----CCceEEEeeecCC---C--eEEEEEcCCCcEEEEEeCCCeEEEEECCCCc-EEEeeCCCCCCeEEEEEecCCCEE
Q 001462 173 -----AGKLLHDFKFHEG---H--IRSIDFHPLEFLLATGSADRTVKFWDLETFE-LIGSTRPEVTGVHAITFHPDGRTL 241 (1074)
Q Consensus 173 -----tgk~v~~~~~h~g---~--ItsLafSPdg~lLaTGS~DGtI~IWDl~tg~-~i~t~~~~~~~ItsIafSPDG~~L 241 (1074)
.++.+..-.++-+ + ...+.|+|...+|++-.....-.++++.... .++.-....+-|.|.+|..||..|
T Consensus 91 ~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RL 170 (671)
T PF15390_consen 91 PSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRL 170 (671)
T ss_pred cCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEE
Confidence 2333322221111 1 2356799999998887766655667766432 232222455779999999999999
Q ss_pred EEEECCcEEEEEecCC
Q 001462 242 FSGFDDNLKVYSWEPV 257 (1074)
Q Consensus 242 asGsd~~I~Vwd~~s~ 257 (1074)
+++-+..+.-|-|+..
T Consensus 171 VVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 171 VVAVGSSLHSYIWDSA 186 (671)
T ss_pred EEEeCCeEEEEEecCc
Confidence 9988778777777653
|
|
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.36 Score=47.09 Aligned_cols=100 Identities=15% Similarity=0.216 Sum_probs=69.6
Q ss_pred eEEEEEcC---CC-CEEEEEEcCCeEEEEEcCCCeeEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEE
Q 001462 61 VDSVAFDS---AE-VLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIH 136 (1074)
Q Consensus 61 ItsLafSp---dg-~~LatGs~DG~I~VWDl~tgk~i~tl~~h~~~VtsLafSPdg~~LaSgS~DGsI~IWDi~tg~~v~ 136 (1074)
|+++++.. +| +.|++|+.|..|++|+ ..+.+.++. ..+.|.+++-... ..|+.+..+|+|-+|+- ...++
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~--~~e~~~Ei~-e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~--~~RlW 75 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFK--GDEIVAEIT-ETDKVTSLCSLGG-GRFAYALANGTVGVYDR--SQRLW 75 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEe--CCcEEEEEe-cccceEEEEEcCC-CEEEEEecCCEEEEEeC--cceee
Confidence 45555543 33 6899999999999998 446777776 4566777777654 66899999999999984 34455
Q ss_pred EEeCCCCCeEEEEEcC-C--C-CEEEEEECCCeEE
Q 001462 137 TYKGHTRGINTIRFTP-D--G-RWVVSGGFDNVVK 167 (1074)
Q Consensus 137 ~l~~h~~~VtsLafSP-d--G-~~LaSgs~DGsI~ 167 (1074)
.++.... +.++++.. + | .-|++|-.+|.|-
T Consensus 76 RiKSK~~-~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 76 RIKSKNQ-VTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eeccCCC-eEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 5554433 56666544 3 2 2688888888764
|
|
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=95.96 E-value=2.1 Score=49.48 Aligned_cols=103 Identities=19% Similarity=0.280 Sum_probs=57.9
Q ss_pred CeEEEEEcCCCCEEEEEEcCCeEEEEEcCCCee---EEEEe----CCCCCeEEEEEcCC---CCEEEEEEC-C-------
Q 001462 60 PVDSVAFDSAEVLVLAGASTGVIKLWDLEESKM---VRTLT----GHKSNCTAVEFHPF---GEFFASGCM-D------- 121 (1074)
Q Consensus 60 ~ItsLafSpdg~~LatGs~DG~I~VWDl~tgk~---i~tl~----~h~~~VtsLafSPd---g~~LaSgS~-D------- 121 (1074)
..+.|+|.|+|++|++ ...|.|++++ .++.. +..+. ........++|+|+ ..+|++... .
T Consensus 3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~ 80 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN 80 (331)
T ss_dssp SEEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred CceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence 3578999999987665 5699999999 44543 22221 23456799999994 334433322 1
Q ss_pred -CeEEEEECCCC--e-----E-EEEEeC---CCCCeEEEEEcCCCCEEEEEECCC
Q 001462 122 -TNLKIWDIRKK--G-----C-IHTYKG---HTRGINTIRFTPDGRWVVSGGFDN 164 (1074)
Q Consensus 122 -GsI~IWDi~tg--~-----~-v~~l~~---h~~~VtsLafSPdG~~LaSgs~DG 164 (1074)
..|.-|....+ . . +..+.. ..+....|.|.|||.++++.+..+
T Consensus 81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~ 135 (331)
T PF07995_consen 81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGG 135 (331)
T ss_dssp EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TT
T ss_pred ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCC
Confidence 23544544333 1 1 112222 234467799999997666665443
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=95.84 E-value=5.7 Score=47.38 Aligned_cols=221 Identities=12% Similarity=0.083 Sum_probs=103.6
Q ss_pred CCCEEEEEE-CCCeEEEEECCC----CeEEEEEeC-------CCCCeEEEEEcCCCCEEEEEE--C----CCeEEEEECC
Q 001462 111 FGEFFASGC-MDTNLKIWDIRK----KGCIHTYKG-------HTRGINTIRFTPDGRWVVSGG--F----DNVVKVWDLT 172 (1074)
Q Consensus 111 dg~~LaSgS-~DGsI~IWDi~t----g~~v~~l~~-------h~~~VtsLafSPdG~~LaSgs--~----DGsI~VWDl~ 172 (1074)
..++|+..+ ..+.|+|+|+.+ -+..+.+.. .-.....+-..|+|..++++- . -|.+.++|-.
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~ 165 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE 165 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence 345777776 568899999873 334444432 112233445567898887743 2 3578899988
Q ss_pred CCceEEEeeecC---CCeEEEEEcCCCcEEEEEeC--------------------CCeEEEEECCCCcEEEeeCCCCCC-
Q 001462 173 AGKLLHDFKFHE---GHIRSIDFHPLEFLLATGSA--------------------DRTVKFWDLETFELIGSTRPEVTG- 228 (1074)
Q Consensus 173 tgk~v~~~~~h~---g~ItsLafSPdg~lLaTGS~--------------------DGtI~IWDl~tg~~i~t~~~~~~~- 228 (1074)
+.+....+.... ..-+.+-|.|..+.+++... ..++.+||+.+.+.++.+......
T Consensus 166 tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~ 245 (461)
T PF05694_consen 166 TFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQ 245 (461)
T ss_dssp T--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEE
T ss_pred cccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCC
Confidence 888887776432 23567788898888888632 357999999999999888654332
Q ss_pred -eEEEEEec--CCCEEEEEECCcEEEEEecC---Ce--eeecccc--------------------CCceeeEEEecCCCE
Q 001462 229 -VHAITFHP--DGRTLFSGFDDNLKVYSWEP---VI--CHDSVDM--------------------GWSTLGDLCINDGKL 280 (1074)
Q Consensus 229 -ItsIafSP--DG~~LasGsd~~I~Vwd~~s---~~--~~~~l~~--------------------~~s~~~~l~spDGkl 280 (1074)
...+.|.. +..+-++|.--+-.||.|-. +. ....+.. ..-+.....+.|.++
T Consensus 246 ~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrf 325 (461)
T PF05694_consen 246 MPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRF 325 (461)
T ss_dssp EEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-E
T ss_pred ceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCE
Confidence 45666654 45555554333323444321 11 1111111 112345556678888
Q ss_pred EEEEE-CCCeEEEEEcCCCcee----eeecCCC-----------CCCCCceeEEEEcCCCCcceeEE
Q 001462 281 LGCSF-YRNSVGIWVADVSHVE----PYGVGAP-----------EPDQSICTEVKFNPPGSHSLEKV 331 (1074)
Q Consensus 281 LAsgs-~DGsV~IWDld~~~l~----~~~~~~~-----------~~~~~~ItsVaFSPDGs~~Lv~v 331 (1074)
|.++. ..|.|+.||+..-... ...++.. ....+...-|..|-||+++.++-
T Consensus 326 LYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 326 LYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTN 392 (461)
T ss_dssp EEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE-
T ss_pred EEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEe
Confidence 87776 5799999998532211 1111110 11233446789999999866553
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >COG5276 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.83 E-value=4.4 Score=45.84 Aligned_cols=270 Identities=11% Similarity=0.060 Sum_probs=148.4
Q ss_pred CCEEEEEEecCCCcEEEEEECCCeEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCC---ee
Q 001462 16 ANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEES---KM 92 (1074)
Q Consensus 16 ~~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~k~l~sl~~hs~~ItsLafSpdg~~LatGs~DG~I~VWDl~tg---k~ 92 (1074)
+-+..+.++. .+++.+..+.-++|.|+.++.....+......=..-.|.-.|++..++..+.-+.+.|+.+. .+
T Consensus 87 ~l~~Dv~vse---~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~vsGn~aYVadlddgfLivdvsdpssP~l 163 (370)
T COG5276 87 DLFADVRVSE---EYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYVSGNYAYVADLDDGFLIVDVSDPSSPQL 163 (370)
T ss_pred hhhheeEecc---cEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEecCCEEEEeeccCcEEEEECCCCCCcee
Confidence 4455666665 36777777778999999877655544322221233344445888888885555778888654 33
Q ss_pred EEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCe---EEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEE
Q 001462 93 VRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKG---CIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVW 169 (1074)
Q Consensus 93 i~tl~~h~~~VtsLafSPdg~~LaSgS~DGsI~IWDi~tg~---~v~~l~~h~~~VtsLafSPdG~~LaSgs~DGsI~VW 169 (1074)
...+......-..++.+ |++-+.++.|+-+.+.|+.... .+..+. ....+.++..+++-.+++.. +--+.+-
T Consensus 164 agrya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n-~g~g~~sv~vsdnr~y~vvy--~egvliv 238 (370)
T COG5276 164 AGRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYN-TGPGTYSVSVSDNRAYLVVY--DEGVLIV 238 (370)
T ss_pred eeeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEEEe-cCCceEEEEecCCeeEEEEc--ccceEEE
Confidence 34444444445677777 8888888899999999987543 233333 23367888887765555544 3346777
Q ss_pred ECCCCceEEEeeec-CCCeEEE-EEcCCCcEEEEEeCCCeEEEEECCCCc--EEEe-eCCCCCCeEEEEEecCCCEEEEE
Q 001462 170 DLTAGKLLHDFKFH-EGHIRSI-DFHPLEFLLATGSADRTVKFWDLETFE--LIGS-TRPEVTGVHAITFHPDGRTLFSG 244 (1074)
Q Consensus 170 Dl~tgk~v~~~~~h-~g~ItsL-afSPdg~lLaTGS~DGtI~IWDl~tg~--~i~t-~~~~~~~ItsIafSPDG~~LasG 244 (1074)
|....+....+... ...+.++ .+.-.+++.+....+.-+.+.|+.+.. .+.. +......-..+.. .|.++...
T Consensus 239 d~s~~ssp~~~gsyet~~p~~~s~v~Vs~~~~Yvadga~gl~~idisnp~spfl~ss~~t~g~~a~gi~a--y~~y~yia 316 (370)
T COG5276 239 DVSGPSSPTVFGSYETSNPVSISTVPVSGEYAYVADGAKGLPIIDISNPPSPFLSSSLDTAGYQAAGIRA--YGNYNYIA 316 (370)
T ss_pred ecCCCCCceEeeccccCCcccccceecccceeeeeccccCceeEeccCCCCCchhccccCCCccccceEE--ecCeeEec
Confidence 87666544443321 1122222 222246666666666667777765421 1111 1111111222222 23444444
Q ss_pred ECCcEEEEEecCCeeeeccccC-CceeeEEEecCCCEEEEEECCCeEEEEEc
Q 001462 245 FDDNLKVYSWEPVICHDSVDMG-WSTLGDLCINDGKLLGCSFYRNSVGIWVA 295 (1074)
Q Consensus 245 sd~~I~Vwd~~s~~~~~~l~~~-~s~~~~l~spDGklLAsgs~DGsV~IWDl 295 (1074)
..+...+-+............. .....+..+-+.+++....+++.+.||+.
T Consensus 317 dkn~g~vV~~s~~s~m~~~~g~~ti~~s~~v~~~~q~~y~~d~~~gl~i~~~ 368 (370)
T COG5276 317 DKNTGAVVDASPPSMMDKRPGRPTIGQSCDVSVDTQIIYSTDYNGGLSIIEY 368 (370)
T ss_pred cCCceEEEeCCChhhcccccCcceEeeecceEEEeeEEEEeecCCCEEEEEe
Confidence 3334445554433222222111 11122223345667888889999999975
|
|
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=95.77 E-value=2.1 Score=50.02 Aligned_cols=142 Identities=13% Similarity=0.104 Sum_probs=80.3
Q ss_pred CCeEEEEEcCCCCEEEEEE-----------CCC-eEEEEECCC--Ce--EEEEEeCCCCCeEEEEEcCCCCEEEEEECCC
Q 001462 101 SNCTAVEFHPFGEFFASGC-----------MDT-NLKIWDIRK--KG--CIHTYKGHTRGINTIRFTPDGRWVVSGGFDN 164 (1074)
Q Consensus 101 ~~VtsLafSPdg~~LaSgS-----------~DG-sI~IWDi~t--g~--~v~~l~~h~~~VtsLafSPdG~~LaSgs~DG 164 (1074)
.....|+|.++|+.+++-. ..+ .|.+++-.. |+ ....+.........++|.++| +++ +....
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~~~ 91 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYV-ATPPD 91 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEE-eCCCe
Confidence 3456789999998766642 223 687776443 22 223443333456889999888 444 44443
Q ss_pred eEEEEECCCC-----ce--E-EEeee----cCCCeEEEEEcCCCcEEEEEeCC-------------------CeEEEEEC
Q 001462 165 VVKVWDLTAG-----KL--L-HDFKF----HEGHIRSIDFHPLEFLLATGSAD-------------------RTVKFWDL 213 (1074)
Q Consensus 165 sI~VWDl~tg-----k~--v-~~~~~----h~g~ItsLafSPdg~lLaTGS~D-------------------GtI~IWDl 213 (1074)
.+++.|.... +. + ..+.. +......+.|.|||.+.++-+.. |.|.-++.
T Consensus 92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~p 171 (367)
T TIGR02604 92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNP 171 (367)
T ss_pred EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEec
Confidence 3334354321 21 1 12222 12346789999999876654421 45666666
Q ss_pred CCCcEEEeeCCCCCCeEEEEEecCCCEEEEEE
Q 001462 214 ETFELIGSTRPEVTGVHAITFHPDGRTLFSGF 245 (1074)
Q Consensus 214 ~tg~~i~t~~~~~~~ItsIafSPDG~~LasGs 245 (1074)
..++. ..+.........++|+++|.++++-.
T Consensus 172 dg~~~-e~~a~G~rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 172 DGGKL-RVVAHGFQNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred CCCeE-EEEecCcCCCccceECCCCCEEEEcc
Confidence 65443 22222223357899999999887643
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.75 E-value=1.2 Score=50.35 Aligned_cols=169 Identities=10% Similarity=0.184 Sum_probs=114.0
Q ss_pred EecCCCCEEEEEEecCCCcEEEEEECCCeEEEEECCCCceEEEeeCC-CCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCC
Q 001462 11 FVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGL-SSPVDSVAFDSAEVLVLAGASTGVIKLWDLEE 89 (1074)
Q Consensus 11 L~gHs~~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~k~l~sl~~h-s~~ItsLafSpdg~~LatGs~DG~I~VWDl~t 89 (1074)
+.|-...|.++.|+|+. +.|++......-.+|=...|+.+..+... -.....+.|..+|.+.++--.++.+.++.+..
T Consensus 81 i~g~~~nvS~LTynp~~-rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~ 159 (316)
T COG3204 81 ILGETANVSSLTYNPDT-RTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDA 159 (316)
T ss_pred cccccccccceeeCCCc-ceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcC
Confidence 34556679999999998 66666666667777766778887776422 23446788888888888888889999888765
Q ss_pred CeeEEEEe---------CC-CCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCe---EEEEEeCC-------CCCeEEEE
Q 001462 90 SKMVRTLT---------GH-KSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKG---CIHTYKGH-------TRGINTIR 149 (1074)
Q Consensus 90 gk~i~tl~---------~h-~~~VtsLafSPdg~~LaSgS~DGsI~IWDi~tg~---~v~~l~~h-------~~~VtsLa 149 (1074)
+..+..+. .+ +.....++|.|.+..|+++-...-+.||.+..+. .++....+ -..+.++.
T Consensus 160 ~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~ 239 (316)
T COG3204 160 DTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLE 239 (316)
T ss_pred CccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccce
Confidence 53221111 12 5567899999999999988777777777655332 11111111 12467888
Q ss_pred EcC-CCCEEEEEECCCeEEEEECCCCceEEEee
Q 001462 150 FTP-DGRWVVSGGFDNVVKVWDLTAGKLLHDFK 181 (1074)
Q Consensus 150 fSP-dG~~LaSgs~DGsI~VWDl~tgk~v~~~~ 181 (1074)
|++ .+.+|+-+.+++.|.-.|.. |..+..+.
T Consensus 240 ~~~~~~~LLVLS~ESr~l~Evd~~-G~~~~~ls 271 (316)
T COG3204 240 FNAITNSLLVLSDESRRLLEVDLS-GEVIELLS 271 (316)
T ss_pred ecCCCCcEEEEecCCceEEEEecC-CCeeeeEE
Confidence 887 45567777788888888864 55554444
|
|
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=95.73 E-value=2 Score=49.67 Aligned_cols=149 Identities=12% Similarity=0.092 Sum_probs=90.1
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCeEEEE-ECCCCeEEEEE-eCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceE
Q 001462 100 KSNCTAVEFHPFGEFFASGCMDTNLKIW-DIRKKGCIHTY-KGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLL 177 (1074)
Q Consensus 100 ~~~VtsLafSPdg~~LaSgS~DGsI~IW-Di~tg~~v~~l-~~h~~~VtsLafSPdG~~LaSgs~DGsI~VWDl~tgk~v 177 (1074)
...+.++.+.+++.+++++ ..|.++.- | ..++....+ ......+..+.+.+++..++++ ..|.+.+-....|..-
T Consensus 172 ~g~~~~i~~~~~g~~v~~g-~~G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW 248 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVS-SRGNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESW 248 (334)
T ss_pred cceEEEEEECCCCeEEEEe-CCceEEEEcC-CCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCcc
Confidence 4568899999988776665 56655432 2 222222222 2334568999999998876665 5677654334444432
Q ss_pred EEeeec----CCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCCcEEEeeC---CCCCCeEEEEEecCCCEEEEEECCcEE
Q 001462 178 HDFKFH----EGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTR---PEVTGVHAITFHPDGRTLFSGFDDNLK 250 (1074)
Q Consensus 178 ~~~~~h----~g~ItsLafSPdg~lLaTGS~DGtI~IWDl~tg~~i~t~~---~~~~~ItsIafSPDG~~LasGsd~~I~ 250 (1074)
.....+ ...+..+.+.+++.++++| .+|.|. +....++...... ........+.|..+++.+++|..+.|.
T Consensus 249 ~~~~~~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~G~il 326 (334)
T PRK13684 249 SKPIIPEITNGYGYLDLAYRTPGEIWAGG-GNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLGQRGVLL 326 (334)
T ss_pred ccccCCccccccceeeEEEcCCCCEEEEc-CCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEECCCceEE
Confidence 222211 2347888999887766554 567554 4445444433332 222357888998888999989888765
Q ss_pred EEE
Q 001462 251 VYS 253 (1074)
Q Consensus 251 Vwd 253 (1074)
.|+
T Consensus 327 ~~~ 329 (334)
T PRK13684 327 RYV 329 (334)
T ss_pred Eec
Confidence 553
|
|
| >COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.97 Score=54.70 Aligned_cols=322 Identities=15% Similarity=0.090 Sum_probs=162.0
Q ss_pred CCCEEEEEEecCCCcEEEEEECCCeEEEEECCCCceEEEeeCCC-CCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeeE
Q 001462 15 SANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLS-SPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMV 93 (1074)
Q Consensus 15 s~~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~k~l~sl~~hs-~~ItsLafSpdg~~LatGs~DG~I~VWDl~tgk~i 93 (1074)
...|..+.+.-.| .+..|+.|| +..||..+++.++.-.... ..|..+.-+-+| .|.+|+.+| |++.+.+..+..
T Consensus 164 d~~V~aLv~D~~g--~lWvgT~dG-L~~fd~~~gkalql~s~~~dk~I~al~~d~qg-~LWVGTdqG-v~~~e~~G~~~s 238 (671)
T COG3292 164 DTPVVALVFDANG--RLWVGTPDG-LSYFDAGRGKALQLASPPLDKAINALIADVQG-RLWVGTDQG-VYLQEAEGWRAS 238 (671)
T ss_pred CccceeeeeeccC--cEEEecCCc-ceEEccccceEEEcCCCcchhhHHHHHHHhcC-cEEEEeccc-eEEEchhhcccc
Confidence 4567788888777 577788887 6677877777666544333 566666655555 467777777 777776553221
Q ss_pred EEEeC-CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEE-eCC--CCCeEEEEEcCCCCEEEEEECCCeEEEE
Q 001462 94 RTLTG-HKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTY-KGH--TRGINTIRFTPDGRWVVSGGFDNVVKVW 169 (1074)
Q Consensus 94 ~tl~~-h~~~VtsLafSPdg~~LaSgS~DGsI~IWDi~tg~~v~~l-~~h--~~~VtsLafSPdG~~LaSgs~DGsI~VW 169 (1074)
..... ..+.|..+.-..+| .+-.|+..|.. .+....+...... +.| ...|.++-...+|. |.++..+|.+.+-
T Consensus 239 n~~~~lp~~~I~ll~qD~qG-~lWiGTenGl~-r~~l~rq~Lq~~~~~~~l~~S~vnsL~~D~dGs-LWv~t~~giv~~~ 315 (671)
T COG3292 239 NWGPMLPSGNILLLVQDAQG-ELWIGTENGLW-RTRLPRQGLQIPLSKMHLGVSTVNSLWLDTDGS-LWVGTYGGIVRYL 315 (671)
T ss_pred ccCCCCcchheeeeecccCC-CEEEeecccce-eEecCCCCccccccccCCccccccceeeccCCC-EeeeccCceEEEe
Confidence 11111 12234333333333 35555555533 2333333322211 212 23456666666776 6666666665544
Q ss_pred ECCCCceEEEeeecCCC-eEEEEEcC--CCcEEEEEeCCCeEEEEECCCCcEEEeeCC-CCCCeEEEEEecCCCEEEEEE
Q 001462 170 DLTAGKLLHDFKFHEGH-IRSIDFHP--LEFLLATGSADRTVKFWDLETFELIGSTRP-EVTGVHAITFHPDGRTLFSGF 245 (1074)
Q Consensus 170 Dl~tgk~v~~~~~h~g~-ItsLafSP--dg~lLaTGS~DGtI~IWDl~tg~~i~t~~~-~~~~ItsIafSPDG~~LasGs 245 (1074)
+ ........+...++. +-.++..| .+..+-....-|.+.+-+-.++..+..... -...|+.+++..+|...+...
T Consensus 316 ~-a~w~~ma~in~~dG~v~~~~~~a~~ll~~~v~~~ns~g~L~van~stG~~v~sv~q~Rg~nit~~~~d~~g~lWlgs~ 394 (671)
T COG3292 316 T-ADWKRMAVINDSDGGVSQYEAVAPALLSWGVRQLNSIGELMVANGSTGELVRSVHQLRGMNITTTLEDSRGRLWLGSM 394 (671)
T ss_pred c-chhhheeeeecCCCchhhhhccCchhcccceeeccccceEEEecCCCCcEEEEeeeccccccchhhhccCCcEEEEec
Confidence 3 223332223322222 11122222 122222222233445555555655544322 224467777777777777666
Q ss_pred CCcEEEEEecC-Ceeeecccc-C-CceeeEEEecCCCEEEEEECCCeEEEEEcCCCceee-eecCCCCCCCCceeEEEEc
Q 001462 246 DDNLKVYSWEP-VICHDSVDM-G-WSTLGDLCINDGKLLGCSFYRNSVGIWVADVSHVEP-YGVGAPEPDQSICTEVKFN 321 (1074)
Q Consensus 246 d~~I~Vwd~~s-~~~~~~l~~-~-~s~~~~l~spDGklLAsgs~DGsV~IWDld~~~l~~-~~~~~~~~~~~~ItsVaFS 321 (1074)
.+++..|+-+. ...+..... . ..+....--++++ |..|+.+|.++. +.+...+.. +..+......+.+..+..-
T Consensus 395 q~GLsrl~n~n~~avlde~agl~ss~V~aived~dns-LWIGTs~Glvk~-~pe~~~v~n~ln~~~~~l~~s~~~~lg~~ 472 (671)
T COG3292 395 QNGLSRLDNKNEWAVLDEDAGLPSSEVSAIVEDPDNS-LWIGTSGGLVKR-DPESGRVLNLLNPGSHGLDGSRVEQLGLG 472 (671)
T ss_pred ccchhhhccCCcccccccccCCcccceeeeeecCCCC-EEEeccCCeEec-CccccchhcccccccCcCCcchhhhhccC
Confidence 76777777666 222222211 1 1222333336777 777778885543 222222222 2222222334567788899
Q ss_pred CCCCcceeEEEEEeccCcceEEeecC
Q 001462 322 PPGSHSLEKVGIIGRSTSGFRSTSPD 347 (1074)
Q Consensus 322 PDGs~~Lv~vlavG~stG~~r~ivpD 347 (1074)
|+|.-.++....+.......+.++|+
T Consensus 473 ~~g~Lw~a~g~gva~~~sq~~~~~~~ 498 (671)
T COG3292 473 PDGRLWLAAGSGVAAWESQRRMFVPI 498 (671)
T ss_pred CCCceEEEecceeeeeccccceeccc
Confidence 99996555555444444333444443
|
|
| >PF14727 PHTB1_N: PTHB1 N-terminus | Back alignment and domain information |
|---|
Probab=95.71 E-value=6.7 Score=46.96 Aligned_cols=145 Identities=11% Similarity=0.188 Sum_probs=91.0
Q ss_pred cCCCcEEEEEECCCeEEEEECCCCc----eEEEeeCCCCCeEEEEEcC-----CCCEEEEEEcCCeEEEEEcCC--Ce--
Q 001462 25 KKACRFLITGGDDQKVNLWAIGKPT----ALMSLCGLSSPVDSVAFDS-----AEVLVLAGASTGVIKLWDLEE--SK-- 91 (1074)
Q Consensus 25 Pdg~~lLaTGs~DGtV~IWDl~t~k----~l~sl~~hs~~ItsLafSp-----dg~~LatGs~DG~I~VWDl~t--gk-- 91 (1074)
+++...|++|+..|.++||+..... .+..-.....+|..+..-. +...||+ -.-..+.||.+.. |.
T Consensus 34 ~~~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~ 112 (418)
T PF14727_consen 34 PSGSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVE 112 (418)
T ss_pred CCCccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCcc
Confidence 3455689999999999999984432 1212233457888777642 2334544 4556788887731 11
Q ss_pred -----eEEEEeCC--CCCeEEEEEcCCC-----CEEEEEECCCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEE
Q 001462 92 -----MVRTLTGH--KSNCTAVEFHPFG-----EFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVS 159 (1074)
Q Consensus 92 -----~i~tl~~h--~~~VtsLafSPdg-----~~LaSgS~DGsI~IWDi~tg~~v~~l~~h~~~VtsLafSPdG~~LaS 159 (1074)
.+..+..| ......+++-|-| .+|.+-+.||.+.+|+-+.......+.. .--...++|.+.-..|++
T Consensus 113 ~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~tDsfvt 191 (418)
T PF14727_consen 113 HGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPRTDSFVT 191 (418)
T ss_pred cCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeecCCEEEE
Confidence 12222223 2334455554432 4778889999999999665444444433 233456788888888999
Q ss_pred EECCCeEEEEEC
Q 001462 160 GGFDNVVKVWDL 171 (1074)
Q Consensus 160 gs~DGsI~VWDl 171 (1074)
++.+..|..|..
T Consensus 192 ~sss~~l~~Yky 203 (418)
T PF14727_consen 192 ASSSWTLECYKY 203 (418)
T ss_pred ecCceeEEEecH
Confidence 998888988865
|
|
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=95.67 E-value=2.6 Score=46.83 Aligned_cols=144 Identities=15% Similarity=0.047 Sum_probs=89.4
Q ss_pred CeEEEEEcCCCCEEEEEE---cCCeEEEEEcCCCeeEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEE-CCCCeE-
Q 001462 60 PVDSVAFDSAEVLVLAGA---STGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWD-IRKKGC- 134 (1074)
Q Consensus 60 ~ItsLafSpdg~~LatGs---~DG~I~VWDl~tgk~i~tl~~h~~~VtsLafSPdg~~LaSgS~DGsI~IWD-i~tg~~- 134 (1074)
.+...++++++..+++.. ....+.++.. +.....+. ....+....|.+++...++...+....++. ...+..
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~--~~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPA--GGPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE 101 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcC--CCcceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence 688999999999887766 2334555553 33333322 234788889999987777666566666663 233322
Q ss_pred EEEEeCC--CCCeEEEEEcCCCCEEEEEE---CCCeEEEEECC---CC------ceEEEeeecCCCeEEEEEcCCCcEEE
Q 001462 135 IHTYKGH--TRGINTIRFTPDGRWVVSGG---FDNVVKVWDLT---AG------KLLHDFKFHEGHIRSIDFHPLEFLLA 200 (1074)
Q Consensus 135 v~~l~~h--~~~VtsLafSPdG~~LaSgs---~DGsI~VWDl~---tg------k~v~~~~~h~g~ItsLafSPdg~lLa 200 (1074)
...+... ...|..+.++|||..++... .++.|.+--+. .+ ............+..+.|.+++.+++
T Consensus 102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V 181 (253)
T PF10647_consen 102 PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVV 181 (253)
T ss_pred eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEE
Confidence 1222211 12799999999999887655 35677776542 23 11112222345789999999998877
Q ss_pred EEeCCC
Q 001462 201 TGSADR 206 (1074)
Q Consensus 201 TGS~DG 206 (1074)
.+...+
T Consensus 182 ~~~~~~ 187 (253)
T PF10647_consen 182 LGRSAG 187 (253)
T ss_pred EeCCCC
Confidence 776544
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=95.57 E-value=4.4 Score=47.42 Aligned_cols=142 Identities=11% Similarity=0.080 Sum_probs=80.3
Q ss_pred CCCEEEEEEecCCCcEEEEEE-----------CCC-eEEEEECC--CCc--eEEEeeCCCCCeEEEEEcCCCCEEEEEEc
Q 001462 15 SANVNCISIGKKACRFLITGG-----------DDQ-KVNLWAIG--KPT--ALMSLCGLSSPVDSVAFDSAEVLVLAGAS 78 (1074)
Q Consensus 15 s~~Vt~IafSPdg~~lLaTGs-----------~DG-tV~IWDl~--t~k--~l~sl~~hs~~ItsLafSpdg~~LatGs~ 78 (1074)
-.....|+|.++| +++++-. ..+ .|.+++-. +++ ....+...-.....++|.++| |++++.
T Consensus 13 ~~~P~~ia~d~~G-~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~ 89 (367)
T TIGR02604 13 LRNPIAVCFDERG-RLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATP 89 (367)
T ss_pred cCCCceeeECCCC-CEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCC
Confidence 4567889999999 5554432 223 67777643 233 233443334456889999988 444444
Q ss_pred CCeEEEE-EcCCC-----ee--E-EEEeC----CCCCeEEEEEcCCCCEEEEEEC-------------------CCeEEE
Q 001462 79 TGVIKLW-DLEES-----KM--V-RTLTG----HKSNCTAVEFHPFGEFFASGCM-------------------DTNLKI 126 (1074)
Q Consensus 79 DG~I~VW-Dl~tg-----k~--i-~tl~~----h~~~VtsLafSPdg~~LaSgS~-------------------DGsI~I 126 (1074)
. .|..| |.... +. + ..+.. +......++|.|||.++++.+. .|.|.-
T Consensus 90 ~-~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r 168 (367)
T TIGR02604 90 P-DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFR 168 (367)
T ss_pred C-eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEE
Confidence 4 34434 54321 21 1 12222 1234678999999986654441 145666
Q ss_pred EECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEE
Q 001462 127 WDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGG 161 (1074)
Q Consensus 127 WDi~tg~~v~~l~~h~~~VtsLafSPdG~~LaSgs 161 (1074)
++...+.. ..+.........++|+++|+++++-.
T Consensus 169 ~~pdg~~~-e~~a~G~rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 169 YNPDGGKL-RVVAHGFQNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred EecCCCeE-EEEecCcCCCccceECCCCCEEEEcc
Confidence 66655443 23322223457899999998776643
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.42 Score=58.47 Aligned_cols=181 Identities=14% Similarity=0.146 Sum_probs=87.6
Q ss_pred cEEEEEECCC------eEEEEECCCCceEEEeeCC---CCCeEEEEEcCCCCEEEEEEcC-----CeEEEEEcCCCeeEE
Q 001462 29 RFLITGGDDQ------KVNLWAIGKPTALMSLCGL---SSPVDSVAFDSAEVLVLAGAST-----GVIKLWDLEESKMVR 94 (1074)
Q Consensus 29 ~lLaTGs~DG------tV~IWDl~t~k~l~sl~~h---s~~ItsLafSpdg~~LatGs~D-----G~I~VWDl~tgk~i~ 94 (1074)
.+++.||.++ .+..||..+.+-. .+... ......+. -++..++.||.+ ..+..||..+++-..
T Consensus 296 ~lyv~GG~~~~~~~~~~v~~yd~~~~~W~-~~~~~~~~R~~~~~~~--~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~ 372 (534)
T PHA03098 296 VIYFIGGMNKNNLSVNSVVSYDTKTKSWN-KVPELIYPRKNPGVTV--FNNRIYVIGGIYNSISLNTVESWKPGESKWRE 372 (534)
T ss_pred EEEEECCCcCCCCeeccEEEEeCCCCeee-ECCCCCcccccceEEE--ECCEEEEEeCCCCCEecceEEEEcCCCCceee
Confidence 5666666543 4667777554432 22111 11112222 256777777765 357778877654221
Q ss_pred --EEeCCCCCeEEEEEcCCCCEEEEEECC------CeEEEEECCCCeEEEEEeCCCC-CeEEEEEcCCCCEEEEEECC--
Q 001462 95 --TLTGHKSNCTAVEFHPFGEFFASGCMD------TNLKIWDIRKKGCIHTYKGHTR-GINTIRFTPDGRWVVSGGFD-- 163 (1074)
Q Consensus 95 --tl~~h~~~VtsLafSPdg~~LaSgS~D------GsI~IWDi~tg~~v~~l~~h~~-~VtsLafSPdG~~LaSgs~D-- 163 (1074)
.+...... .+++. -+++.++.||.+ ..+..||..++.-...-..... .-.+++ ..++..++.||.+
T Consensus 373 ~~~lp~~r~~-~~~~~-~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~-~~~~~iyv~GG~~~~ 449 (534)
T PHA03098 373 EPPLIFPRYN-PCVVN-VNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAI-YHDGKIYVIGGISYI 449 (534)
T ss_pred CCCcCcCCcc-ceEEE-ECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEE-EECCEEEEECCccCC
Confidence 11111111 12222 256667777632 3588899876543221110100 011222 2356666777643
Q ss_pred ------CeEEEEECCCCceEEE--eeecCCCeEEEEEcCCCcEEEEEeCC-----CeEEEEECCCCc
Q 001462 164 ------NVVKVWDLTAGKLLHD--FKFHEGHIRSIDFHPLEFLLATGSAD-----RTVKFWDLETFE 217 (1074)
Q Consensus 164 ------GsI~VWDl~tgk~v~~--~~~h~g~ItsLafSPdg~lLaTGS~D-----GtI~IWDl~tg~ 217 (1074)
..+.+||..+++-... +.........+.+ ++.+++.|+.+ ..|.+||..+.+
T Consensus 450 ~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 514 (534)
T PHA03098 450 DNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NNKIYVVGGDKYEYYINEIEVYDDKTNT 514 (534)
T ss_pred CCCcccceEEEecCCCCceeeCCCCCcccccceEEEE--CCEEEEEcCCcCCcccceeEEEeCCCCE
Confidence 2388899877653321 1111111122222 56777777654 467888877654
|
|
| >PLN00033 photosystem II stability/assembly factor; Provisional | Back alignment and domain information |
|---|
Probab=95.30 E-value=8.8 Score=45.72 Aligned_cols=143 Identities=11% Similarity=0.050 Sum_probs=78.6
Q ss_pred eEEEEEcCCCCEEEEEECCCeEEEEECCCCce--EEEeeecCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCCc-----
Q 001462 145 INTIRFTPDGRWVVSGGFDNVVKVWDLTAGKL--LHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFE----- 217 (1074)
Q Consensus 145 VtsLafSPdG~~LaSgs~DGsI~VWDl~tgk~--v~~~~~h~g~ItsLafSPdg~lLaTGS~DGtI~IWDl~tg~----- 217 (1074)
...+..+++|.+++++.....++-|| .|.. ...-......+..+.|.+++.+++++ .+|.+. |....++
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d--~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~-~S~d~G~~~~~~ 316 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWE--PGQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGLY-VSKGTGLTEEDF 316 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecC--CCCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceEE-EecCCCCccccc
Confidence 34456677887766665433333344 2332 11112234568899999998888765 456543 3344443
Q ss_pred EEEeeCC--CCCCeEEEEEecCCCEEEEEECCcEEEEEecCCeeeeccc----cCCceeeEEEecCCCEEEEEECCCeEE
Q 001462 218 LIGSTRP--EVTGVHAITFHPDGRTLFSGFDDNLKVYSWEPVICHDSVD----MGWSTLGDLCINDGKLLGCSFYRNSVG 291 (1074)
Q Consensus 218 ~i~t~~~--~~~~ItsIafSPDG~~LasGsd~~I~Vwd~~s~~~~~~l~----~~~s~~~~l~spDGklLAsgs~DGsV~ 291 (1074)
....... ....+..+.|.+++..+++|..+.+... .+.++.-.... .........+.++++.++.| .+|.|.
T Consensus 317 ~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~~G~v~~s-~D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G-~~G~il 394 (398)
T PLN00033 317 DFEEADIKSRGFGILDVGYRSKKEAWAAGGSGILLRS-TDGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLG-NDGVLL 394 (398)
T ss_pred ceeecccCCCCcceEEEEEcCCCcEEEEECCCcEEEe-CCCCcceeEccccCCCCcceeEEEEcCCCceEEEe-CCcEEE
Confidence 1222221 2235889999999999888877754333 33333222211 11233344455666766666 788776
Q ss_pred EE
Q 001462 292 IW 293 (1074)
Q Consensus 292 IW 293 (1074)
-|
T Consensus 395 ~~ 396 (398)
T PLN00033 395 RY 396 (398)
T ss_pred Ee
Confidence 55
|
|
| >KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.59 Score=60.07 Aligned_cols=142 Identities=11% Similarity=0.110 Sum_probs=91.1
Q ss_pred CCeEEEEEcCCCCEEEEEEc--CCeEEEEEcCCCee-----EEEEe------CCCCCeEEEEEcCCCC-EEEEEECCCeE
Q 001462 59 SPVDSVAFDSAEVLVLAGAS--TGVIKLWDLEESKM-----VRTLT------GHKSNCTAVEFHPFGE-FFASGCMDTNL 124 (1074)
Q Consensus 59 ~~ItsLafSpdg~~LatGs~--DG~I~VWDl~tgk~-----i~tl~------~h~~~VtsLafSPdg~-~LaSgS~DGsI 124 (1074)
-+|..+...+|+...++... +-.|..||++.-.. ..-|. ....-..++.|+|.-. .++++..|+.|
T Consensus 101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl 180 (1405)
T KOG3630|consen 101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL 180 (1405)
T ss_pred ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence 35556666677665554433 33788999875321 11111 1233456788988533 45666778999
Q ss_pred EEEECCCCeE-EEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeee----cCCCeEEEEEcCCCcEE
Q 001462 125 KIWDIRKKGC-IHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKF----HEGHIRSIDFHPLEFLL 199 (1074)
Q Consensus 125 ~IWDi~tg~~-v~~l~~h~~~VtsLafSPdG~~LaSgs~DGsI~VWDl~tgk~v~~~~~----h~g~ItsLafSPdg~lL 199 (1074)
.+..+..... +..+. .....+|++|+|.|+.++.|..+|.+.-|.. .++....+.+ ..+.|.+|+|-....+|
T Consensus 181 ~V~~~~~~~~~v~s~p-~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P-~leik~~ip~Pp~~e~yrvl~v~Wl~t~efl 258 (1405)
T KOG3630|consen 181 RVKSTKQLAQNVTSFP-VTNSQTAVLWSPRGKQLFIGRNNGTEVQYEP-SLEIKSEIPEPPVEENYRVLSVTWLSTQEFL 258 (1405)
T ss_pred hhhhhhhhhhhhcccC-cccceeeEEeccccceeeEecCCCeEEEeec-ccceeecccCCCcCCCcceeEEEEecceeEE
Confidence 9887654332 22222 3456899999999999999999999998875 3444444332 13679999998776666
Q ss_pred EEE
Q 001462 200 ATG 202 (1074)
Q Consensus 200 aTG 202 (1074)
++-
T Consensus 259 vvy 261 (1405)
T KOG3630|consen 259 VVY 261 (1405)
T ss_pred EEe
Confidence 654
|
|
| >COG1520 FOG: WD40-like repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=95.26 E-value=3.8 Score=47.81 Aligned_cols=147 Identities=16% Similarity=0.052 Sum_probs=91.4
Q ss_pred EEEEEEcCCeEEEEEcCCCeeEEEEeCCC--CCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeCCC-CCeEEE
Q 001462 72 LVLAGASTGVIKLWDLEESKMVRTLTGHK--SNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHT-RGINTI 148 (1074)
Q Consensus 72 ~LatGs~DG~I~VWDl~tgk~i~tl~~h~--~~VtsLafSPdg~~LaSgS~DGsI~IWDi~tg~~v~~l~~h~-~~VtsL 148 (1074)
.++++..+|.|.-+|.+++..+....... ..+..-.+..+|+ +++++.+|.++.+|..+|..+....... ..+..-
T Consensus 70 ~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~~ 148 (370)
T COG1520 70 TVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGGSPYYASP 148 (370)
T ss_pred eEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCCCeEEecC
Confidence 45555788999999999988765444322 2333333333666 7777889999999998999988887555 112222
Q ss_pred EEcCCCCEEEEEECCCeEEEEECCCCceEEEeeecCC---CeEEEEEcCCCcEEEEEeC--CCeEEEEECCCCcEEEe
Q 001462 149 RFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEG---HIRSIDFHPLEFLLATGSA--DRTVKFWDLETFELIGS 221 (1074)
Q Consensus 149 afSPdG~~LaSgs~DGsI~VWDl~tgk~v~~~~~h~g---~ItsLafSPdg~lLaTGS~--DGtI~IWDl~tg~~i~t 221 (1074)
..-.++ .++.++.+|.+...|..+|+....+..... .+..-.. .....++.+.. ++.+.-+|..+|.....
T Consensus 149 ~v~~~~-~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~-~~~~~vy~~~~~~~~~~~a~~~~~G~~~w~ 224 (370)
T COG1520 149 PVVGDG-TVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPA-IASGTVYVGSDGYDGILYALNAEDGTLKWS 224 (370)
T ss_pred cEEcCc-EEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCce-eecceEEEecCCCcceEEEEEccCCcEeee
Confidence 222243 344444789999999999998877654221 1111111 12334555555 56777778888877665
|
|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=95.26 E-value=0.63 Score=56.91 Aligned_cols=183 Identities=15% Similarity=0.184 Sum_probs=88.0
Q ss_pred CCCEEEEEECCC------eEEEEECCCCeEEEEEeC--CCCCeEEEEEcCCCCEEEEEECC-----CeEEEEECCCCceE
Q 001462 111 FGEFFASGCMDT------NLKIWDIRKKGCIHTYKG--HTRGINTIRFTPDGRWVVSGGFD-----NVVKVWDLTAGKLL 177 (1074)
Q Consensus 111 dg~~LaSgS~DG------sI~IWDi~tg~~v~~l~~--h~~~VtsLafSPdG~~LaSgs~D-----GsI~VWDl~tgk~v 177 (1074)
++..++.||.++ .+..||..+......-.. .......+. -++..++.||.+ ..+..||..+++-.
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~--~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~ 371 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTV--FNNRIYVIGGIYNSISLNTVESWKPGESKWR 371 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEE--ECCEEEEEeCCCCCEecceEEEEcCCCCcee
Confidence 456666766542 477888876654221110 111122222 256777778765 35778887765432
Q ss_pred EE--eeecCCCeEEEEEcCCCcEEEEEeCC------CeEEEEECCCCcEEEeeCCCCCCeEEEEEecCCCEEEEEEC---
Q 001462 178 HD--FKFHEGHIRSIDFHPLEFLLATGSAD------RTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGFD--- 246 (1074)
Q Consensus 178 ~~--~~~h~g~ItsLafSPdg~lLaTGS~D------GtI~IWDl~tg~~i~t~~~~~~~ItsIafSPDG~~LasGsd--- 246 (1074)
.. +...... .+++. -++.+++.|+.+ ..+..||+.+.+...............+...++..++.|+.
T Consensus 372 ~~~~lp~~r~~-~~~~~-~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~ 449 (534)
T PHA03098 372 EEPPLIFPRYN-PCVVN-VNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVIGGISYI 449 (534)
T ss_pred eCCCcCcCCcc-ceEEE-ECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEEECCEEEEECCccCC
Confidence 21 1111111 12222 256777777632 35889998865433221111111111122335555555532
Q ss_pred ------CcEEEEEecCCeeeecc--ccCCceeeEEEecCCCEEEEEECC-----CeEEEEEcCCC
Q 001462 247 ------DNLKVYSWEPVICHDSV--DMGWSTLGDLCINDGKLLGCSFYR-----NSVGIWVADVS 298 (1074)
Q Consensus 247 ------~~I~Vwd~~s~~~~~~l--~~~~s~~~~l~spDGklLAsgs~D-----GsV~IWDld~~ 298 (1074)
+.+.+||.........- ...... ..++..++++++.|+.+ +.|.+||.+..
T Consensus 450 ~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~-~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~ 513 (534)
T PHA03098 450 DNIKVYNIVESYNPVTNKWTELSSLNFPRIN-ASLCIFNNKIYVVGGDKYEYYINEIEVYDDKTN 513 (534)
T ss_pred CCCcccceEEEecCCCCceeeCCCCCccccc-ceEEEECCEEEEEcCCcCCcccceeEEEeCCCC
Confidence 12667776654433221 111111 12233478888888754 45777776544
|
|
| >KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=95.24 E-value=14 Score=47.70 Aligned_cols=293 Identities=13% Similarity=0.129 Sum_probs=155.2
Q ss_pred EEEecCCCcEEEEEECCCeEEEEEC--CCCceEEEe--eCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeeEEEE
Q 001462 21 ISIGKKACRFLITGGDDQKVNLWAI--GKPTALMSL--CGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTL 96 (1074)
Q Consensus 21 IafSPdg~~lLaTGs~DGtV~IWDl--~t~k~l~sl--~~hs~~ItsLafSpdg~~LatGs~DG~I~VWDl~tgk~i~tl 96 (1074)
..|-.|. .+|.++..||.+.-|-+ .++..-..- .--..++.--.|+..++.-+.++.|.-..+|.- +++.+..-
T Consensus 589 ~~~e~d~-~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~-n~kLv~sp 666 (1096)
T KOG1897|consen 589 TTFEGDI-HYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSS-NGKLVYSP 666 (1096)
T ss_pred EEeeccc-eEEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEec-CCcEEEec
Confidence 3344444 68888999999876654 444322111 223456666777765554444445555556653 34443321
Q ss_pred eCCCCCeEE-EEEcCC--CCEEEEEECCCeEEEEECCCCeE--EEEEeCCCCCeEEEEEcCCCCEEEEEEC---------
Q 001462 97 TGHKSNCTA-VEFHPF--GEFFASGCMDTNLKIWDIRKKGC--IHTYKGHTRGINTIRFTPDGRWVVSGGF--------- 162 (1074)
Q Consensus 97 ~~h~~~Vts-LafSPd--g~~LaSgS~DGsI~IWDi~tg~~--v~~l~~h~~~VtsLafSPdG~~LaSgs~--------- 162 (1074)
-. -..+.. +.|+.+ ...++++. .+.+.+.-+..-+. ++++. -......+++.+....+.+.+.
T Consensus 667 ls-~kev~~~c~f~s~a~~d~l~~~~-~~~l~i~tid~iqkl~irtvp-l~~~prrI~~q~~sl~~~v~s~r~e~~~~~~ 743 (1096)
T KOG1897|consen 667 LS-LKEVNHMCPFNSDAYPDSLASAN-GGALTIGTIDEIQKLHIRTVP-LGESPRRICYQESSLTFGVLSNRIESSAEYY 743 (1096)
T ss_pred cc-hHHhhhhcccccccCCceEEEec-CCceEEEEecchhhcceeeec-CCCChhheEecccceEEEEEecccccchhhc
Confidence 11 111222 223322 34566654 45677776654332 23333 2344677777764444443331
Q ss_pred --C---CeEEEEECCCCceEEEeeecC----CCeEEEEEcCC-CcEEEEEeC----------CCeEEEEECCCCcEEEee
Q 001462 163 --D---NVVKVWDLTAGKLLHDFKFHE----GHIRSIDFHPL-EFLLATGSA----------DRTVKFWDLETFELIGST 222 (1074)
Q Consensus 163 --D---GsI~VWDl~tgk~v~~~~~h~----g~ItsLafSPd-g~lLaTGS~----------DGtI~IWDl~tg~~i~t~ 222 (1074)
. ..++++|-.+.+.+...+... ..|.++.|..| +.++++|.. .|.|.+|....+..+...
T Consensus 744 ~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v 823 (1096)
T KOG1897|consen 744 GEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELV 823 (1096)
T ss_pred CCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeee
Confidence 1 146777776666554433211 23555668877 677777752 467778777663333322
Q ss_pred CCC--CCCeEEEEEecCCCEEEEEECCcEEEEEecCCeeeec-cccCCceeeEEEecCCCEEEEEECCCeEEEEEcCCCc
Q 001462 223 RPE--VTGVHAITFHPDGRTLFSGFDDNLKVYSWEPVICHDS-VDMGWSTLGDLCINDGKLLGCSFYRNSVGIWVADVSH 299 (1074)
Q Consensus 223 ~~~--~~~ItsIafSPDG~~LasGsd~~I~Vwd~~s~~~~~~-l~~~~s~~~~l~spDGklLAsgs~DGsV~IWDld~~~ 299 (1074)
..+ .+.+.++..- +| .+++|-+..+++|+|...+.... -............-.|..+++|.-=+.+.+-.....+
T Consensus 824 ~e~~v~Gav~aL~~f-ng-kllA~In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~e 901 (1096)
T KOG1897|consen 824 AETVVKGAVYALVEF-NG-KLLAGINQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDE 901 (1096)
T ss_pred eeeeeccceeehhhh-CC-eEEEecCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccC
Confidence 221 2333333221 34 45666677899999988744332 2333334444445688899999877777766554443
Q ss_pred --eeeeecCCCCCCCCceeEEEEcCC
Q 001462 300 --VEPYGVGAPEPDQSICTEVKFNPP 323 (1074)
Q Consensus 300 --l~~~~~~~~~~~~~~ItsVaFSPD 323 (1074)
...... .-+..+.+.+.+--+
T Consensus 902 g~f~evAr---D~~p~Wmtaveil~~ 924 (1096)
T KOG1897|consen 902 GNFEEVAR---DYNPNWMTAVEILDD 924 (1096)
T ss_pred CceEEeeh---hhCccceeeEEEecC
Confidence 333321 344555555555543
|
|
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.13 E-value=0.022 Score=61.48 Aligned_cols=139 Identities=15% Similarity=0.168 Sum_probs=72.5
Q ss_pred EEEEEcCCeEEEEEcCCCeeEEEE-eCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEE-EeCCCCCeEE-EE
Q 001462 73 VLAGASTGVIKLWDLEESKMVRTL-TGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHT-YKGHTRGINT-IR 149 (1074)
Q Consensus 73 LatGs~DG~I~VWDl~tgk~i~tl-~~h~~~VtsLafSPdg~~LaSgS~DGsI~IWDi~tg~~v~~-l~~h~~~Vts-La 149 (1074)
|..-+.+|.|.-+++...+....- .-+... .....-+..+++|+.+|.|++|.......... +......|.+ +.
T Consensus 33 l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~---~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip 109 (238)
T KOG2444|consen 33 LRATSADGLVRERKVRKHKESCRSERFIDEG---QRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIP 109 (238)
T ss_pred hccccCCcccccchhhhhhhhhhhhhhhhcc---eeecccCceEEeecccceEEEecCCccchHHHhhhcccccceeccc
Confidence 334456677777766543321111 011111 11122356789999999999999763222111 1111222222 22
Q ss_pred EcCCCCEEEEEECCCeEEEEECCCCceEEEeeecC-CCeEEEEEcCCCcEEEEE--eCCCeEEEEECC
Q 001462 150 FTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHE-GHIRSIDFHPLEFLLATG--SADRTVKFWDLE 214 (1074)
Q Consensus 150 fSPdG~~LaSgs~DGsI~VWDl~tgk~v~~~~~h~-g~ItsLafSPdg~lLaTG--S~DGtI~IWDl~ 214 (1074)
-..++.+.++++.+|.|+.|++.-++.+.....|. .++..+.....+.+|+.+ +.|..++.|++.
T Consensus 110 ~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 110 NGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred cccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchh
Confidence 23355688899999999999998887776655555 223323233333333333 444444444443
|
|
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=94.90 E-value=0.95 Score=54.94 Aligned_cols=182 Identities=12% Similarity=0.026 Sum_probs=89.1
Q ss_pred CCCEEEEEECCC-----eEEEEECCCCeEEEEE--eCCCCCeEEEEEcCCCCEEEEEECC--CeEEEEECCCCceEEE--
Q 001462 111 FGEFFASGCMDT-----NLKIWDIRKKGCIHTY--KGHTRGINTIRFTPDGRWVVSGGFD--NVVKVWDLTAGKLLHD-- 179 (1074)
Q Consensus 111 dg~~LaSgS~DG-----sI~IWDi~tg~~v~~l--~~h~~~VtsLafSPdG~~LaSgs~D--GsI~VWDl~tgk~v~~-- 179 (1074)
++..+++||.++ .+..||..++.....- ....... +++ .-+|...+.||.+ ..+..||..+++-...
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~-~~v-~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~ 348 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYA-SGV-PANNKLYVVGGLPNPTSVERWFHGDAAWVNMPS 348 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcc-eEE-EECCEEEEECCcCCCCceEEEECCCCeEEECCC
Confidence 355566666542 4777887765532211 1111111 222 2357777777754 3577888765532221
Q ss_pred eeecCCCeEEEEEcCCCcEEEEEeCCC---eEEEEECCCCcEEEeeCCCCCCeEEEEEecCCCEEEEEECCcEEEEEecC
Q 001462 180 FKFHEGHIRSIDFHPLEFLLATGSADR---TVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGFDDNLKVYSWEP 256 (1074)
Q Consensus 180 ~~~h~g~ItsLafSPdg~lLaTGS~DG---tI~IWDl~tg~~i~t~~~~~~~ItsIafSPDG~~LasGsd~~I~Vwd~~s 256 (1074)
+.........+. -+|.+.+.|+.++ .+..||..+.+....-..........+..-+|+..+.|+ ...+||.++
T Consensus 349 l~~~r~~~~~~~--~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~IYv~GG--~~e~ydp~~ 424 (480)
T PHA02790 349 LLKPRCNPAVAS--INNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLFLVGR--NAEFYCESS 424 (480)
T ss_pred CCCCCcccEEEE--ECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEECCEEEEECC--ceEEecCCC
Confidence 111111111222 2577777777653 467888876543322111111111122234566666663 456788765
Q ss_pred CeeeeccccCC-ceeeEEEecCCCEEEEEECC-----CeEEEEEcCCC
Q 001462 257 VICHDSVDMGW-STLGDLCINDGKLLGCSFYR-----NSVGIWVADVS 298 (1074)
Q Consensus 257 ~~~~~~l~~~~-s~~~~l~spDGklLAsgs~D-----GsV~IWDld~~ 298 (1074)
......-++.. .....+..-+|++.++||.+ ..|.+||....
T Consensus 425 ~~W~~~~~m~~~r~~~~~~v~~~~IYviGG~~~~~~~~~ve~Yd~~~~ 472 (480)
T PHA02790 425 NTWTLIDDPIYPRDNPELIIVDNKLLLIGGFYRGSYIDTIEVYNNRTY 472 (480)
T ss_pred CcEeEcCCCCCCccccEEEEECCEEEEECCcCCCcccceEEEEECCCC
Confidence 54433222221 11223344688888888754 34666666544
|
|
| >PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins | Back alignment and domain information |
|---|
Probab=94.89 E-value=6.8 Score=47.73 Aligned_cols=150 Identities=19% Similarity=0.231 Sum_probs=83.9
Q ss_pred EEEEE---EcCCeEEEEEcCCCeeEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeCCCCC---e
Q 001462 72 LVLAG---ASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRG---I 145 (1074)
Q Consensus 72 ~LatG---s~DG~I~VWDl~tgk~i~tl~~h~~~VtsLafSPdg~~LaSgS~DGsI~IWDi~tg~~v~~l~~h~~~---V 145 (1074)
+++.. ...+...++|. .|...+.+.........+.+.++|.+++... +.++.+|+- |+.+..+...... =
T Consensus 117 ~~~~~~~~~~~~~~~~iD~-~G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~--~~~~e~D~~-G~v~~~~~l~~~~~~~H 192 (477)
T PF05935_consen 117 YFVNGNDWDSSSYTYLIDN-NGDVRWYLPLDSGSDNSFKQLPNGNLLIGSG--NRLYEIDLL-GKVIWEYDLPGGYYDFH 192 (477)
T ss_dssp EEEEETT--BEEEEEEEET-TS-EEEEE-GGGT--SSEEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE-B-
T ss_pred EEEeCCCCCCCceEEEECC-CccEEEEEccCccccceeeEcCCCCEEEecC--CceEEEcCC-CCEEEeeecCCcccccc
Confidence 44444 24566777785 5666666653332222267788998777654 789999974 6666666533321 3
Q ss_pred EEEEEcCCCCEEEEEEC-------------CCeEEEEECCCCceEEEeee--cC-------------------------C
Q 001462 146 NTIRFTPDGRWVVSGGF-------------DNVVKVWDLTAGKLLHDFKF--HE-------------------------G 185 (1074)
Q Consensus 146 tsLafSPdG~~LaSgs~-------------DGsI~VWDl~tgk~v~~~~~--h~-------------------------g 185 (1074)
..+.+.|+|++|+.+.. .-.|..+| .+|+.+..+.. |- -
T Consensus 193 HD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~ 271 (477)
T PF05935_consen 193 HDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWL 271 (477)
T ss_dssp S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS-
T ss_pred cccEECCCCCEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCcc
Confidence 56788899999888772 12467777 88888777642 10 1
Q ss_pred CeEEEEEcC-CCcEEEEEeCCCeEEEEECCCCcEEEeeCCCC
Q 001462 186 HIRSIDFHP-LEFLLATGSADRTVKFWDLETFELIGSTRPEV 226 (1074)
Q Consensus 186 ~ItsLafSP-dg~lLaTGS~DGtI~IWDl~tg~~i~t~~~~~ 226 (1074)
.+.++.+.+ ++.+|+++-.-..|..+|..+++....+..+.
T Consensus 272 H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wilg~~~ 313 (477)
T PF05935_consen 272 HINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWILGPPG 313 (477)
T ss_dssp -EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEES-ST
T ss_pred ccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEeCCCC
Confidence 267899988 55666665555689999988888887776554
|
Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A. |
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=94.83 E-value=3 Score=46.39 Aligned_cols=147 Identities=11% Similarity=0.091 Sum_probs=89.3
Q ss_pred CEEEEEEecCCCcEEEEEECCCeEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEE-cCCCeeE-E
Q 001462 17 NVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWD-LEESKMV-R 94 (1074)
Q Consensus 17 ~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~k~l~sl~~hs~~ItsLafSpdg~~LatGs~DG~I~VWD-l~tgk~i-~ 94 (1074)
.+.+.++++++..+.+....++.-.||-...+.....+. ....+....|++++...++...+....++. ...+... .
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~ 103 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPV 103 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcceeE
Confidence 689999999996565555333333444333333332221 233778889999988777766666666663 3333322 1
Q ss_pred EEeC--CCCCeEEEEEcCCCCEEEEEE---CCCeEEEEECC---CC------eEEEEEeCCCCCeEEEEEcCCCCEEEEE
Q 001462 95 TLTG--HKSNCTAVEFHPFGEFFASGC---MDTNLKIWDIR---KK------GCIHTYKGHTRGINTIRFTPDGRWVVSG 160 (1074)
Q Consensus 95 tl~~--h~~~VtsLafSPdg~~LaSgS---~DGsI~IWDi~---tg------~~v~~l~~h~~~VtsLafSPdG~~LaSg 160 (1074)
.+.. ....|..+.++|||..++... .++.|++--+. .+ ............+..+.|.+++.+++.+
T Consensus 104 ~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~ 183 (253)
T PF10647_consen 104 EVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVLG 183 (253)
T ss_pred EecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEEEe
Confidence 2221 122899999999999877765 35777777553 22 1112222234578999999999877766
Q ss_pred ECCC
Q 001462 161 GFDN 164 (1074)
Q Consensus 161 s~DG 164 (1074)
...+
T Consensus 184 ~~~~ 187 (253)
T PF10647_consen 184 RSAG 187 (253)
T ss_pred CCCC
Confidence 5443
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.66 E-value=0.029 Score=69.68 Aligned_cols=175 Identities=17% Similarity=0.235 Sum_probs=94.4
Q ss_pred EecCCCCEEEEEEecCCCcEEEEEECCCeEEEEECC--CCceEE-----EeeCCCCCeEEEEEcC---CCCEEEEEEcCC
Q 001462 11 FVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIG--KPTALM-----SLCGLSSPVDSVAFDS---AEVLVLAGASTG 80 (1074)
Q Consensus 11 L~gHs~~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~--t~k~l~-----sl~~hs~~ItsLafSp---dg~~LatGs~DG 80 (1074)
++|..+.|-.|.|-.-....+. ..-|.+.+|++. .|+... ........+.-+.|.| +..++.++-.+|
T Consensus 128 ~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~ 205 (1283)
T KOG1916|consen 128 AKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGG 205 (1283)
T ss_pred HhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCC
Confidence 3566777888887443222222 334678899873 333222 2223334555666665 667888888888
Q ss_pred eEEEEEcCCCeeEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEE
Q 001462 81 VIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSG 160 (1074)
Q Consensus 81 ~I~VWDl~tgk~i~tl~~h~~~VtsLafSPdg~~LaSgS~DGsI~IWDi~tg~~v~~l~~h~~~VtsLafSPdG~~LaSg 160 (1074)
.|++..+..... ..+.+|...+..++|...|-..+.+ ++|||..|+.+
T Consensus 206 ~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~-------------------------------lSpDGtv~a~a 253 (1283)
T KOG1916|consen 206 EIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLAS-------------------------------LSPDGTVFAWA 253 (1283)
T ss_pred ceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhhee-------------------------------eCCCCcEEEEe
Confidence 988888765432 3344577666666655433211111 55666666666
Q ss_pred ECCCeEEEEEC-----CCCceEEEeeecC-CCeEEEEEcCC-------C--cEEEEEe-CCCeEEEEECCCCcEE
Q 001462 161 GFDNVVKVWDL-----TAGKLLHDFKFHE-GHIRSIDFHPL-------E--FLLATGS-ADRTVKFWDLETFELI 219 (1074)
Q Consensus 161 s~DGsI~VWDl-----~tgk~v~~~~~h~-g~ItsLafSPd-------g--~lLaTGS-~DGtI~IWDl~tg~~i 219 (1074)
+.||.+.+|.+ ....+++.++.|+ ++-.|..|+.+ + .++++++ .+..+++|....++|+
T Consensus 254 ~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 254 ISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred ecCCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence 66665555443 2223444455554 22222223221 1 2334443 4567999988888776
|
|
| >PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A | Back alignment and domain information |
|---|
Probab=94.51 E-value=15 Score=44.73 Aligned_cols=249 Identities=10% Similarity=0.045 Sum_probs=123.2
Q ss_pred cCCCCEEEEEEcCCeEEEEEcCCCe---eEEEEeCC-CCCeEEEEEcCCC-CEEEEEEC--CCeEEEEECCCCeEEEEEe
Q 001462 67 DSAEVLVLAGASTGVIKLWDLEESK---MVRTLTGH-KSNCTAVEFHPFG-EFFASGCM--DTNLKIWDIRKKGCIHTYK 139 (1074)
Q Consensus 67 Spdg~~LatGs~DG~I~VWDl~tgk---~i~tl~~h-~~~VtsLafSPdg-~~LaSgS~--DGsI~IWDi~tg~~v~~l~ 139 (1074)
..++..++.+..+|.+....+.... .+..+ +. .....++.+..+| .+|++|+. |+.++.|....-..+..+.
T Consensus 219 ~~~~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~-g~~~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~~l~~~~~~~ 297 (504)
T PF10433_consen 219 DKDGDRILLQDEDGDLYLLTLDNDGGSISITYL-GTLCSIASSLTYLKNGGDYLFVGSEFGDSQLLQISLSNLEVLDSLP 297 (504)
T ss_dssp STTSSEEEEEETTSEEEEEEEEEEEEEEEEEEE-EE--S-ESEEEEESTT--EEEEEESSS-EEEEEEESESEEEEEEE-
T ss_pred cCCCCEEEEEeCCCeEEEEEEEECCCeEEEEEc-CCcCChhheEEEEcCCCEEEEEEEecCCcEEEEEeCCCcEEEEecc
Confidence 3467788999999999988776533 12222 22 4456677777665 36677765 5667777755555566665
Q ss_pred CCCCCeEEEEEcCC----CC------EEEEEE---CCCeEEEEECCCCceEE----EeeecCC--CeEEEEEcC-CCcEE
Q 001462 140 GHTRGINTIRFTPD----GR------WVVSGG---FDNVVKVWDLTAGKLLH----DFKFHEG--HIRSIDFHP-LEFLL 199 (1074)
Q Consensus 140 ~h~~~VtsLafSPd----G~------~LaSgs---~DGsI~VWDl~tgk~v~----~~~~h~g--~ItsLafSP-dg~lL 199 (1074)
.-++|..+++.+. .. .|++++ .+|.|+++.- |-... ......+ .++.+.... ++.+|
T Consensus 298 -N~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~--Gi~~~~~~~~~~~l~~v~~iW~l~~~~~~~~~l 374 (504)
T PF10433_consen 298 -NWGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRN--GIGIEGLELASSELPGVTGIWTLKLSSSDHSYL 374 (504)
T ss_dssp ----SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEE--SBEEE--EEEEEEESTEEEEEEE-SSSSSBSEE
T ss_pred -CcCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEec--cCCceeeeeeccCCCCceEEEEeeecCCCceEE
Confidence 4567888888531 11 455544 4678888743 32222 1112222 234443332 24677
Q ss_pred EEEeCCCeEEEEECC---CCcEEEeeC--CC---CCCeEEEEEecCCCEEEEEECCcEEEEEecCCeeeeccccCCceee
Q 001462 200 ATGSADRTVKFWDLE---TFELIGSTR--PE---VTGVHAITFHPDGRTLFSGFDDNLKVYSWEPVICHDSVDMGWSTLG 271 (1074)
Q Consensus 200 aTGS~DGtI~IWDl~---tg~~i~t~~--~~---~~~ItsIafSPDG~~LasGsd~~I~Vwd~~s~~~~~~l~~~~s~~~ 271 (1074)
+....+.+ +++.+. ..+.+.... +. ...+.+-.+. +..++=-...+|++.+.................-
T Consensus 375 v~S~~~~T-~vl~~~~~d~~e~~~e~~~~~f~~~~~Tl~~~~~~--~~~ivQVt~~~i~l~~~~~~~~~~~w~~~~~~~I 451 (504)
T PF10433_consen 375 VLSFPNET-RVLQISEGDDGEEVEEVEEDGFDTDEPTLAAGNVG--DGRIVQVTPKGIRLIDLEDGKLTQEWKPPAGSII 451 (504)
T ss_dssp EEEESSEE-EEEEES----SSEEEEE---TS-SSS-EEEEEEET--TTEEEEEESSEEEEEESSSTSEEEEEE-TTS---
T ss_pred EEEcCCce-EEEEEecccCCcchhhhhhccCCCCCCCeEEEEcC--CCeEEEEecCeEEEEECCCCeEEEEEeCCCCCeE
Confidence 77665544 455553 344432221 11 1122222222 4555555667788887665554443322222222
Q ss_pred EEEecCCCEEEEEECCCeEEEEEcCCCceeeeecCC-CCCCCCceeEEEEcC
Q 001462 272 DLCINDGKLLGCSFYRNSVGIWVADVSHVEPYGVGA-PEPDQSICTEVKFNP 322 (1074)
Q Consensus 272 ~l~spDGklLAsgs~DGsV~IWDld~~~l~~~~~~~-~~~~~~~ItsVaFSP 322 (1074)
..++.++.+++.+..++.+.++.++........... .......+.|+..+|
T Consensus 452 ~~a~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eis~l~i~p 503 (504)
T PF10433_consen 452 VAASINDPQVLVALSGGELVYFELDDNKISVSDNDETILELDNEISCLSIEP 503 (504)
T ss_dssp SEEEESSSEEEEEE-TTEEEEEEEETTEEEEEEE----EE-SS-EEEEE---
T ss_pred EEEEECCCEEEEEEeCCcEEEEEEECCceeeeeeccccccCCCceEEEEeCC
Confidence 233334456666667888999988777664333211 011456788877766
|
... |
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=94.19 E-value=1.4 Score=53.49 Aligned_cols=179 Identities=9% Similarity=-0.014 Sum_probs=84.2
Q ss_pred cEEEEEECCC-----eEEEEECCCCceEEE--eeCCCCCeEEEEEcCCCCEEEEEEcC--CeEEEEEcCCCeeEEEEeCC
Q 001462 29 RFLITGGDDQ-----KVNLWAIGKPTALMS--LCGLSSPVDSVAFDSAEVLVLAGAST--GVIKLWDLEESKMVRTLTGH 99 (1074)
Q Consensus 29 ~lLaTGs~DG-----tV~IWDl~t~k~l~s--l~~hs~~ItsLafSpdg~~LatGs~D--G~I~VWDl~tgk~i~tl~~h 99 (1074)
.++++||.++ .+..||..+..-... +.........+. -+|...++||.+ ..+..||..+++-.. +..-
T Consensus 273 ~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~--~~~~iYviGG~~~~~sve~ydp~~n~W~~-~~~l 349 (480)
T PHA02790 273 VVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVP--ANNKLYVVGGLPNPTSVERWFHGDAAWVN-MPSL 349 (480)
T ss_pred EEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEE--ECCEEEEECCcCCCCceEEEECCCCeEEE-CCCC
Confidence 5667777543 466777765432221 111111111222 356677777754 357788876553221 1111
Q ss_pred CCCe-EEEEEcCCCCEEEEEECCC---eEEEEECCCCeEEEE--EeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC
Q 001462 100 KSNC-TAVEFHPFGEFFASGCMDT---NLKIWDIRKKGCIHT--YKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTA 173 (1074)
Q Consensus 100 ~~~V-tsLafSPdg~~LaSgS~DG---sI~IWDi~tg~~v~~--l~~h~~~VtsLafSPdG~~LaSgs~DGsI~VWDl~t 173 (1074)
..+. ......-+|+.++.||.++ .+..||..+..-... +....... +++ .-+|+..+.| |.+.+||..+
T Consensus 350 ~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~-~~~-~~~~~IYv~G---G~~e~ydp~~ 424 (480)
T PHA02790 350 LKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKS-CAL-VFGRRLFLVG---RNAEFYCESS 424 (480)
T ss_pred CCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccc-eEE-EECCEEEEEC---CceEEecCCC
Confidence 1111 1111222577777777553 467888766543221 11011111 222 2245555655 3567888876
Q ss_pred CceEEE--eeecCCCeEEEEEcCCCcEEEEEeCC-----CeEEEEECCCCc
Q 001462 174 GKLLHD--FKFHEGHIRSIDFHPLEFLLATGSAD-----RTVKFWDLETFE 217 (1074)
Q Consensus 174 gk~v~~--~~~h~g~ItsLafSPdg~lLaTGS~D-----GtI~IWDl~tg~ 217 (1074)
++-... +.........+.+ +|.+.++||.+ ..+..||..+.+
T Consensus 425 ~~W~~~~~m~~~r~~~~~~v~--~~~IYviGG~~~~~~~~~ve~Yd~~~~~ 473 (480)
T PHA02790 425 NTWTLIDDPIYPRDNPELIIV--DNKLLLIGGFYRGSYIDTIEVYNNRTYS 473 (480)
T ss_pred CcEeEcCCCCCCccccEEEEE--CCEEEEECCcCCCcccceEEEEECCCCe
Confidence 543321 1111112222222 56777777754 245666666543
|
|
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=94.18 E-value=8.9 Score=49.03 Aligned_cols=93 Identities=15% Similarity=0.232 Sum_probs=51.7
Q ss_pred CCeEEEEEcCCCCEEEEEEcCCeEEEEEcCC-CeeEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEE
Q 001462 59 SPVDSVAFDSAEVLVLAGASTGVIKLWDLEE-SKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHT 137 (1074)
Q Consensus 59 ~~ItsLafSpdg~~LatGs~DG~I~VWDl~t-gk~i~tl~~h~~~VtsLafSPdg~~LaSgS~DGsI~IWDi~tg~~v~~ 137 (1074)
..|..+.++++|.+|+..|..| |.|..+.. ......+.+....|.|-.+.=+..++ .
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~-~-------------------- 142 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFF-T-------------------- 142 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhc-c--------------------
Confidence 4588899999999999988866 55555421 11111222222223222222111111 0
Q ss_pred EeCCCCCeEEEEEcCC---CCEEEEEECCCeEEEEECCCC
Q 001462 138 YKGHTRGINTIRFTPD---GRWVVSGGFDNVVKVWDLTAG 174 (1074)
Q Consensus 138 l~~h~~~VtsLafSPd---G~~LaSgs~DGsI~VWDl~tg 174 (1074)
..+...|..+.|+|. +.+|++-..|+.|++||+...
T Consensus 143 -~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 143 -SNSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDP 181 (717)
T ss_pred -CCCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCC
Confidence 112345677778774 467777777888888887643
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.14 E-value=2.9 Score=45.87 Aligned_cols=140 Identities=15% Similarity=0.154 Sum_probs=87.0
Q ss_pred CeEEEEEcCCCCEEEEEEc----------CCeEEEEEcCCCeeEEEEeCCCCCeEEEEEcCCCCEEEEE-ECCCeEEEEE
Q 001462 60 PVDSVAFDSAEVLVLAGAS----------TGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASG-CMDTNLKIWD 128 (1074)
Q Consensus 60 ~ItsLafSpdg~~LatGs~----------DG~I~VWDl~tgk~i~tl~~h~~~VtsLafSPdg~~LaSg-S~DGsI~IWD 128 (1074)
....-..+|+|+++ .|.. .|.++.|-. +..+..+...-..-..++|+.+.+.|+.- +.+-.|.-||
T Consensus 110 R~NDgkvdP~Gryy-~GtMad~~~~le~~~g~Ly~~~~--~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~d 186 (310)
T KOG4499|consen 110 RLNDGKVDPDGRYY-GGTMADFGDDLEPIGGELYSWLA--GHQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYD 186 (310)
T ss_pred ccccCccCCCCcee-eeeeccccccccccccEEEEecc--CCCceeeehhccCCccccccccCcEEEEEccCceEEeeee
Confidence 44556678999984 3332 234444432 22222222223334568898877766554 5566787787
Q ss_pred --CCCCe-----EEEEEeC----CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeeecCCCeEEEEEcCC-C
Q 001462 129 --IRKKG-----CIHTYKG----HTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPL-E 196 (1074)
Q Consensus 129 --i~tg~-----~v~~l~~----h~~~VtsLafSPdG~~LaSgs~DGsI~VWDl~tgk~v~~~~~h~g~ItsLafSPd-g 196 (1074)
..+|. .+..++. .....-.++...+|+++++.-..|.|..+|..+|+.+.+++.....|+++||--. -
T Consensus 187 yd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgGkn~ 266 (310)
T KOG4499|consen 187 YDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGGKNL 266 (310)
T ss_pred cCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecCCCc
Confidence 44443 2333322 1112234566778898888888999999999999999999988889999999643 2
Q ss_pred cEEEEE
Q 001462 197 FLLATG 202 (1074)
Q Consensus 197 ~lLaTG 202 (1074)
.+|++.
T Consensus 267 d~~yvT 272 (310)
T KOG4499|consen 267 DILYVT 272 (310)
T ss_pred cEEEEE
Confidence 344443
|
|
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=94.07 E-value=16 Score=43.80 Aligned_cols=89 Identities=12% Similarity=0.155 Sum_probs=58.0
Q ss_pred EEEEcCCCCEEEEEEcCCeEEE---EEcC-CC----eeEEEEe---CC--CCCeEEEEEcC-----------CCCEEEEE
Q 001462 63 SVAFDSAEVLVLAGASTGVIKL---WDLE-ES----KMVRTLT---GH--KSNCTAVEFHP-----------FGEFFASG 118 (1074)
Q Consensus 63 sLafSpdg~~LatGs~DG~I~V---WDl~-tg----k~i~tl~---~h--~~~VtsLafSP-----------dg~~LaSg 118 (1074)
.++.+|++.+|+.+..+..+.+ |+.. .+ ....... .+ .+.|+++.|.| |...+++|
T Consensus 6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG 85 (415)
T PF14655_consen 6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVG 85 (415)
T ss_pred eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEE
Confidence 4678899999999877665554 5331 11 1111111 11 15688877754 35689999
Q ss_pred ECCCeEEEEECCCCeEEEEEeCCCCCeEEEEEcC
Q 001462 119 CMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTP 152 (1074)
Q Consensus 119 S~DGsI~IWDi~tg~~v~~l~~h~~~VtsLafSP 152 (1074)
..+|.|++|.- +|..+..-.-|..+|..|.+..
T Consensus 86 ~ssG~vrfyte-~G~LL~~Q~~h~~pV~~ik~~~ 118 (415)
T PF14655_consen 86 TSSGYVRFYTE-NGVLLLSQLLHEEPVLKIKCRS 118 (415)
T ss_pred ecccEEEEEec-cchHHHHHhcCccceEEEEecc
Confidence 99999999994 6666655555777777777643
|
|
| >TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 | Back alignment and domain information |
|---|
Probab=94.07 E-value=14 Score=42.35 Aligned_cols=207 Identities=13% Similarity=0.145 Sum_probs=117.5
Q ss_pred CEEEEEEecCCCcEEEEEECCCeEEEEECC------CCce-EEEeeC-----CCCCeEEEEEcCCCC------------E
Q 001462 17 NVNCISIGKKACRFLITGGDDQKVNLWAIG------KPTA-LMSLCG-----LSSPVDSVAFDSAEV------------L 72 (1074)
Q Consensus 17 ~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~------t~k~-l~sl~~-----hs~~ItsLafSpdg~------------~ 72 (1074)
.-..|+|+|.+ .+-++....+...+||.. ..+. ...+.. .....+.+.|+.... .
T Consensus 24 N~WGia~~p~~-~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~ 102 (336)
T TIGR03118 24 NAWGLSYRPGG-PFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSR 102 (336)
T ss_pred ccceeEecCCC-CEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCccccee
Confidence 34679999988 555555667889999985 2222 233331 234577888874332 3
Q ss_pred EEEEEcCCeEEEEEcCCCee-----EEEEe-CCCCCe-EEEEEcC--CCCEEEEE-ECCCeEEEEECCCCeEEEE---Ee
Q 001462 73 VLAGASTGVIKLWDLEESKM-----VRTLT-GHKSNC-TAVEFHP--FGEFFASG-CMDTNLKIWDIRKKGCIHT---YK 139 (1074)
Q Consensus 73 LatGs~DG~I~VWDl~tgk~-----i~tl~-~h~~~V-tsLafSP--dg~~LaSg-S~DGsI~IWDi~tg~~v~~---l~ 139 (1074)
++.++.||+|.-|...-+.. ...+. .....| ..+++.. .+++|+.+ -..++|.+||-. ...+.. +.
T Consensus 103 Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~-f~~~~~~g~F~ 181 (336)
T TIGR03118 103 FLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGS-FRPPPLPGSFI 181 (336)
T ss_pred EEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCc-cccccCCCCcc
Confidence 67788999999998532221 11222 112233 3345543 35666655 346889999843 222111 11
Q ss_pred CC-----CCC--e---------EEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEee--ecCCCeEEEEEcC------C
Q 001462 140 GH-----TRG--I---------NTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFK--FHEGHIRSIDFHP------L 195 (1074)
Q Consensus 140 ~h-----~~~--V---------tsLafSPdG~~LaSgs~DGsI~VWDl~tgk~v~~~~--~h~g~ItsLafSP------d 195 (1074)
.. ..+ | +-..-.++++.=+.|-.-|.|-+||+ .|..++.+. +.-...+.|+..| .
T Consensus 182 DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~-~G~l~~r~as~g~LNaPWG~a~APa~FG~~s 260 (336)
T TIGR03118 182 DPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTL-NGQLLRRVASSGRLNAPWGLAIAPESFGSLS 260 (336)
T ss_pred CCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcC-CCcEEEEeccCCcccCCceeeeChhhhCCCC
Confidence 00 000 1 11111112211222333478999997 588887774 2223456677765 3
Q ss_pred CcEEEEEeCCCeEEEEECCCCcEEEeeCCCC
Q 001462 196 EFLLATGSADRTVKFWDLETFELIGSTRPEV 226 (1074)
Q Consensus 196 g~lLaTGS~DGtI~IWDl~tg~~i~t~~~~~ 226 (1074)
+.+|+---.||+|..||..+++.+..+....
T Consensus 261 g~lLVGNFGDG~InaFD~~sG~~~g~L~~~~ 291 (336)
T TIGR03118 261 GALLVGNFGDGTINAYDPQSGAQLGQLLDPD 291 (336)
T ss_pred CCeEEeecCCceeEEecCCCCceeeeecCCC
Confidence 5677766789999999999999887776543
|
This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus. |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.01 E-value=2.3 Score=53.00 Aligned_cols=195 Identities=8% Similarity=0.121 Sum_probs=104.9
Q ss_pred CeEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeeEEEE----eCCCCCeEEEEEcCCCC
Q 001462 38 QKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTL----TGHKSNCTAVEFHPFGE 113 (1074)
Q Consensus 38 GtV~IWDl~t~k~l~sl~~hs~~ItsLafSpdg~~LatGs~DG~I~VWDl~tgk~i~tl----~~h~~~VtsLafSPdg~ 113 (1074)
-.|+||++ .|..+..+......+-.+.|+.+.. |++...+|.++||++-. +.+... ......|..+.|..+|=
T Consensus 64 ~~I~If~~-sG~lL~~~~w~~~~lI~mgWs~~ee-LI~v~k~g~v~Vy~~~g-e~ie~~svg~e~~~~~I~ec~~f~~GV 140 (829)
T KOG2280|consen 64 PYIRIFNI-SGQLLGRILWKHGELIGMGWSDDEE-LICVQKDGTVHVYGLLG-EFIESNSVGFESQMSDIVECRFFHNGV 140 (829)
T ss_pred eeEEEEec-cccchHHHHhcCCCeeeecccCCce-EEEEeccceEEEeecch-hhhcccccccccccCceeEEEEecCce
Confidence 45777776 5566655554455888999997765 55557899999999853 332221 22334466666665664
Q ss_pred EEEEEECCCeEEEEECCCCeEEEEEeC-CCCCe--EEEEEcCCCC---EEEEEE-CCCeEEEEECCCCc-eEEEeeecCC
Q 001462 114 FFASGCMDTNLKIWDIRKKGCIHTYKG-HTRGI--NTIRFTPDGR---WVVSGG-FDNVVKVWDLTAGK-LLHDFKFHEG 185 (1074)
Q Consensus 114 ~LaSgS~DGsI~IWDi~tg~~v~~l~~-h~~~V--tsLafSPdG~---~LaSgs-~DGsI~VWDl~tgk-~v~~~~~h~g 185 (1074)
.+.+ .+|.+.+-+-........+.. ..... .|....+++. .++-.. ..| ..++-...+. ....+....+
T Consensus 141 avlt--~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~~~q~~~~~~~~~ 217 (829)
T KOG2280|consen 141 AVLT--VSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEESRVQLHALSWPNS 217 (829)
T ss_pred EEEe--cCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hcccceecccccccccCCCCc
Confidence 3333 456665554222222333322 11111 2222222221 111111 011 1111111111 1122222245
Q ss_pred CeEEEEEcCCCcEEEEEeCCCeEEEEECCCCcEEEeeCCC-CCCeEEEEEecCC
Q 001462 186 HIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPE-VTGVHAITFHPDG 238 (1074)
Q Consensus 186 ~ItsLafSPdg~lLaTGS~DGtI~IWDl~tg~~i~t~~~~-~~~ItsIafSPDG 238 (1074)
.+..+..+|+..+|+.-..+|.|.+-+....++...+... ......++|..+.
T Consensus 218 ~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~~p~qm~Wcgnd 271 (829)
T KOG2280|consen 218 SVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTDHDPPKQMAWCGND 271 (829)
T ss_pred eEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCCCCCchHhceeecCC
Confidence 6788999999999999999999999998877766665422 2233467777654
|
|
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=93.80 E-value=14 Score=42.85 Aligned_cols=226 Identities=15% Similarity=0.151 Sum_probs=111.5
Q ss_pred CEEEEEEecCCCcEEEEEECCCeEEEEECCCCce---EEEe----eCCCCCeEEEEEcCC---CCEEEEEEc-C------
Q 001462 17 NVNCISIGKKACRFLITGGDDQKVNLWAIGKPTA---LMSL----CGLSSPVDSVAFDSA---EVLVLAGAS-T------ 79 (1074)
Q Consensus 17 ~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~k~---l~sl----~~hs~~ItsLafSpd---g~~LatGs~-D------ 79 (1074)
.-..|+|.|+| ++|+ +...|.|++++ ..+.. +..+ .........++|+|+ ..+|++... .
T Consensus 3 ~P~~~a~~pdG-~l~v-~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~ 79 (331)
T PF07995_consen 3 NPRSMAFLPDG-RLLV-AERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGD 79 (331)
T ss_dssp SEEEEEEETTS-CEEE-EETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSS
T ss_pred CceEEEEeCCC-cEEE-EeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCC
Confidence 35789999998 6554 56699999999 34433 2222 233467889999994 234444333 1
Q ss_pred --CeEEEEEcCCC-------e-eEEEEeC---CCCCeEEEEEcCCCCEEEEEECC-------------CeEEEEECCCC-
Q 001462 80 --GVIKLWDLEES-------K-MVRTLTG---HKSNCTAVEFHPFGEFFASGCMD-------------TNLKIWDIRKK- 132 (1074)
Q Consensus 80 --G~I~VWDl~tg-------k-~i~tl~~---h~~~VtsLafSPdg~~LaSgS~D-------------GsI~IWDi~tg- 132 (1074)
..|.-|.+..+ + ++..+.. ....-..|.|.|||.++++.+.. |.|.-.+....
T Consensus 80 ~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG~~ 159 (331)
T PF07995_consen 80 NDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPDGSI 159 (331)
T ss_dssp EEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETTSSB
T ss_pred cceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEecccCcC
Confidence 24555555433 1 1122222 23345679999999766555433 23333332211
Q ss_pred -------------eEEEEEeCCCCCeEEEEEcCC-CCEEEE-EECCC--eEEEEEC--------CC------C-------
Q 001462 133 -------------GCIHTYKGHTRGINTIRFTPD-GRWVVS-GGFDN--VVKVWDL--------TA------G------- 174 (1074)
Q Consensus 133 -------------~~v~~l~~h~~~VtsLafSPd-G~~LaS-gs~DG--sI~VWDl--------~t------g------- 174 (1074)
..+. -.++. ....++|+|. |.++++ -+.++ .|.+..- .. +
T Consensus 160 p~dnP~~~~~~~~~~i~-A~GlR-N~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~ 237 (331)
T PF07995_consen 160 PADNPFVGDDGADSEIY-AYGLR-NPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAP 237 (331)
T ss_dssp -TTSTTTTSTTSTTTEE-EE--S-EEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGS
T ss_pred CCCCccccCCCceEEEE-EeCCC-ccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCcccccc
Confidence 0011 01122 2468899998 654433 11222 2332210 00 0
Q ss_pred ------ceEEEeeecCCCeEEEEEcC-------CCcEEEEEeCCCeEEEEECCCCcEEE---ee-CCCCCCeEEEEEecC
Q 001462 175 ------KLLHDFKFHEGHIRSIDFHP-------LEFLLATGSADRTVKFWDLETFELIG---ST-RPEVTGVHAITFHPD 237 (1074)
Q Consensus 175 ------k~v~~~~~h~g~ItsLafSP-------dg~lLaTGS~DGtI~IWDl~tg~~i~---t~-~~~~~~ItsIafSPD 237 (1074)
.++..+..| ..+..+.|.. .|.+|+.....+.|....+.....+. .+ ......+..+++.||
T Consensus 238 ~~~~~~~P~~~~~~~-~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pD 316 (331)
T PF07995_consen 238 SCPGFVPPVFAYPPH-SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPD 316 (331)
T ss_dssp S-TTS---SEEETTT---EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETT
T ss_pred CCCCcCccceeecCc-cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCC
Confidence 122233323 4456666653 34566655556678777776443221 22 223346889999999
Q ss_pred CCEEEEEE-CCc
Q 001462 238 GRTLFSGF-DDN 248 (1074)
Q Consensus 238 G~~LasGs-d~~ 248 (1074)
|.++++.. ++.
T Consensus 317 G~Lyv~~d~~G~ 328 (331)
T PF07995_consen 317 GALYVSDDSDGK 328 (331)
T ss_dssp SEEEEEE-TTTT
T ss_pred CeEEEEECCCCe
Confidence 88777754 444
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.76 E-value=0.47 Score=60.92 Aligned_cols=140 Identities=11% Similarity=-0.058 Sum_probs=90.0
Q ss_pred CeEEEEEcCCCCEEEEE--ECCCeEEEEECCCCeEEE-----------EEeCCCCCeEEEEEcCCCC-EEEEEECCCeEE
Q 001462 102 NCTAVEFHPFGEFFASG--CMDTNLKIWDIRKKGCIH-----------TYKGHTRGINTIRFTPDGR-WVVSGGFDNVVK 167 (1074)
Q Consensus 102 ~VtsLafSPdg~~LaSg--S~DGsI~IWDi~tg~~v~-----------~l~~h~~~VtsLafSPdG~-~LaSgs~DGsI~ 167 (1074)
.+..+...+|+...++. +.+-.|+.||++...... ..........++.|.|.-- ..+++..|+.|.
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~ 181 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR 181 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence 45556666676654444 334479999987533211 1111234467888988432 345566788888
Q ss_pred EEECCCCceE-EEeeecCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCCcEEEeeCC----CCCCeEEEEEecCCCEEE
Q 001462 168 VWDLTAGKLL-HDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRP----EVTGVHAITFHPDGRTLF 242 (1074)
Q Consensus 168 VWDl~tgk~v-~~~~~h~g~ItsLafSPdg~lLaTGS~DGtI~IWDl~tg~~i~t~~~----~~~~ItsIafSPDG~~La 242 (1074)
+..+...... ..+. .....++++|+|.|+.+++|..+|++.-|... ++....+.. ....|.+++|-..-.+++
T Consensus 182 V~~~~~~~~~v~s~p-~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl~t~eflv 259 (1405)
T KOG3630|consen 182 VKSTKQLAQNVTSFP-VTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWLSTQEFLV 259 (1405)
T ss_pred hhhhhhhhhhhcccC-cccceeeEEeccccceeeEecCCCeEEEeecc-cceeecccCCCcCCCcceeEEEEecceeEEE
Confidence 8876543322 2222 34457999999999999999999999988765 333333221 135689999998877877
Q ss_pred E
Q 001462 243 S 243 (1074)
Q Consensus 243 s 243 (1074)
+
T Consensus 260 v 260 (1405)
T KOG3630|consen 260 V 260 (1405)
T ss_pred E
Confidence 6
|
|
| >PLN00033 photosystem II stability/assembly factor; Provisional | Back alignment and domain information |
|---|
Probab=93.51 E-value=21 Score=42.59 Aligned_cols=136 Identities=11% Similarity=0.039 Sum_probs=75.2
Q ss_pred CeEEEEEcCCCcEEEEEeCCCeEEEEECCCCcEEEeeCCCCCCeEEEEEecCCCEEEEEECCcEEEEEecCCee-----e
Q 001462 186 HIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGFDDNLKVYSWEPVIC-----H 260 (1074)
Q Consensus 186 ~ItsLafSPdg~lLaTGS~DGtI~IWDl~tg~~i~t~~~~~~~ItsIafSPDG~~LasGsd~~I~Vwd~~s~~~-----~ 260 (1074)
....+..++++.+++.+.....++-||--.......-......+..+.|.++|..++++..+.+ ++.-+.+.. .
T Consensus 240 sf~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g~~G~l-~~S~d~G~~~~~~~f 318 (398)
T PLN00033 240 TFSTVNRSPDGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLTRGGGL-YVSKGTGLTEEDFDF 318 (398)
T ss_pred ceeeEEEcCCCCEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEeCCceE-EEecCCCCcccccce
Confidence 3455667788887777654332333443211012222333456889999999999998877764 444444321 1
Q ss_pred ecccc---CCceeeEEEecCCCEEEEEECCCeEEEEEcCCCceeeeecCCCCCCCCceeEEEEcCCCC
Q 001462 261 DSVDM---GWSTLGDLCINDGKLLGCSFYRNSVGIWVADVSHVEPYGVGAPEPDQSICTEVKFNPPGS 325 (1074)
Q Consensus 261 ~~l~~---~~s~~~~l~spDGklLAsgs~DGsV~IWDld~~~l~~~~~~~~~~~~~~ItsVaFSPDGs 325 (1074)
..... ........+.+++..+++| .+|.+....-..+.-.... ........+..+.|.++++
T Consensus 319 ~~~~~~~~~~~l~~v~~~~d~~~~a~G-~~G~v~~s~D~G~tW~~~~--~~~~~~~~ly~v~f~~~~~ 383 (398)
T PLN00033 319 EEADIKSRGFGILDVGYRSKKEAWAAG-GSGILLRSTDGGKSWKRDK--GADNIAANLYSVKFFDDKK 383 (398)
T ss_pred eecccCCCCcceEEEEEcCCCcEEEEE-CCCcEEEeCCCCcceeEcc--ccCCCCcceeEEEEcCCCc
Confidence 11111 1234555566777777666 7776666643322212211 1134456788999988766
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.37 E-value=3.3 Score=51.70 Aligned_cols=204 Identities=12% Similarity=0.066 Sum_probs=99.4
Q ss_pred CeEEEEEcCCCeeEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEE----eCCCCCeEEEEEcCCCC
Q 001462 80 GVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTY----KGHTRGINTIRFTPDGR 155 (1074)
Q Consensus 80 G~I~VWDl~tgk~i~tl~~h~~~VtsLafSPdg~~LaSgS~DGsI~IWDi~tg~~v~~l----~~h~~~VtsLafSPdG~ 155 (1074)
-.|+||+. .|.++..+......+-.+.|+.+.. |++...+|.+++|++-. ..+..+ ......|..+.|..+|-
T Consensus 64 ~~I~If~~-sG~lL~~~~w~~~~lI~mgWs~~ee-LI~v~k~g~v~Vy~~~g-e~ie~~svg~e~~~~~I~ec~~f~~GV 140 (829)
T KOG2280|consen 64 PYIRIFNI-SGQLLGRILWKHGELIGMGWSDDEE-LICVQKDGTVHVYGLLG-EFIESNSVGFESQMSDIVECRFFHNGV 140 (829)
T ss_pred eeEEEEec-cccchHHHHhcCCCeeeecccCCce-EEEEeccceEEEeecch-hhhcccccccccccCceeEEEEecCce
Confidence 45888886 5666666555555888999997665 55557899999999753 222221 12223455555555664
Q ss_pred EEEEEECCCeEEEEECCCCceEEEeee---cCCCeEEEEEcCCC-c--EEEEEe-CCCeEEEEECCCC-cEEEeeCCCCC
Q 001462 156 WVVSGGFDNVVKVWDLTAGKLLHDFKF---HEGHIRSIDFHPLE-F--LLATGS-ADRTVKFWDLETF-ELIGSTRPEVT 227 (1074)
Q Consensus 156 ~LaSgs~DGsI~VWDl~tgk~v~~~~~---h~g~ItsLafSPdg-~--lLaTGS-~DGtI~IWDl~tg-~~i~t~~~~~~ 227 (1074)
.+. ..+|.+.+..-......+.+.. ..-+..|....+++ . .++-.. ..| ..++-.... .....+....+
T Consensus 141 avl--t~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~~~q~~~~~~~~~ 217 (829)
T KOG2280|consen 141 AVL--TVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEESRVQLHALSWPNS 217 (829)
T ss_pred EEE--ecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hcccceecccccccccCCCCc
Confidence 333 3345554433222212222221 11111222222221 1 111100 111 011111111 11122222346
Q ss_pred CeEEEEEecCCCEEEE-EECCcEEEEEecCCeeeeccccCCceeeEEEecCCCEEEEEECCCeEEEEEcC
Q 001462 228 GVHAITFHPDGRTLFS-GFDDNLKVYSWEPVICHDSVDMGWSTLGDLCINDGKLLGCSFYRNSVGIWVAD 296 (1074)
Q Consensus 228 ~ItsIafSPDG~~Las-Gsd~~I~Vwd~~s~~~~~~l~~~~s~~~~l~spDGklLAsgs~DGsV~IWDld 296 (1074)
.+..+..||++++|+. ...|.+.+-+.+...+...+...... .|+ -++.++.|..+.+|...
T Consensus 218 ~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~-----~p~--qm~WcgndaVvl~~e~~ 280 (829)
T KOG2280|consen 218 SVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTDHD-----PPK--QMAWCGNDAVVLSWEVN 280 (829)
T ss_pred eEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCCCCC-----chH--hceeecCCceEEEEeee
Confidence 6888999999999997 45666777776665544333321110 011 23334466666777543
|
|
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=93.33 E-value=13 Score=47.71 Aligned_cols=95 Identities=16% Similarity=0.277 Sum_probs=56.5
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCeEEEEECCC-CeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEE
Q 001462 100 KSNCTAVEFHPFGEFFASGCMDTNLKIWDIRK-KGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLH 178 (1074)
Q Consensus 100 ~~~VtsLafSPdg~~LaSgS~DGsI~IWDi~t-g~~v~~l~~h~~~VtsLafSPdG~~LaSgs~DGsI~VWDl~tgk~v~ 178 (1074)
.-.|..+.++++|.+++..|..| |.|..+.. ...-..+.+....+.|-.+.=+..+ .
T Consensus 84 ~f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~---------------------~ 141 (717)
T PF10168_consen 84 LFEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERF---------------------F 141 (717)
T ss_pred ceeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhh---------------------c
Confidence 34688899999999999988766 55555432 1111222222222322222111111 0
Q ss_pred EeeecCCCeEEEEEcCC---CcEEEEEeCCCeEEEEECCCCc
Q 001462 179 DFKFHEGHIRSIDFHPL---EFLLATGSADRTVKFWDLETFE 217 (1074)
Q Consensus 179 ~~~~h~g~ItsLafSPd---g~lLaTGS~DGtI~IWDl~tg~ 217 (1074)
...+...|..+.|+|. +..|++-..|++|++||+....
T Consensus 142 -~~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 142 -TSNSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred -cCCCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCCC
Confidence 0113345788899996 5788888999999999997543
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2 | Back alignment and domain information |
|---|
Probab=93.26 E-value=19 Score=41.23 Aligned_cols=230 Identities=11% Similarity=0.017 Sum_probs=111.8
Q ss_pred cEEEEEECCCeEEEEECCCC-ceEEEeeCCCCCeEEEEEcCCCCEEEEE-EcCCeEEEEEcCCCee--------------
Q 001462 29 RFLITGGDDQKVNLWAIGKP-TALMSLCGLSSPVDSVAFDSAEVLVLAG-ASTGVIKLWDLEESKM-------------- 92 (1074)
Q Consensus 29 ~lLaTGs~DGtV~IWDl~t~-k~l~sl~~hs~~ItsLafSpdg~~LatG-s~DG~I~VWDl~tgk~-------------- 92 (1074)
++|+.|..+|...+ ++... .....+. +...|+++...+..+.|++- +....++++++..-..
T Consensus 14 ~~lL~GTe~Gly~~-~~~~~~~~~~kl~-~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~~~~~~~~~ 91 (302)
T smart00036 14 KWLLVGTEEGLYVL-NISDQPGTLEKLI-GRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSALVEKKEALGSARLVIRK 91 (302)
T ss_pred cEEEEEeCCceEEE-EcccCCCCeEEec-CcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhhhhhhccCCccccccc
Confidence 58999999985544 45432 2222222 45689999998877665554 4445599999842111
Q ss_pred -EEEEeCCCCCeEEEEEcCCC-CEEEEEECCCeEEEEECCCC--e--EEEEE---e-CCCCCeEEEEEcCC--CCEEEEE
Q 001462 93 -VRTLTGHKSNCTAVEFHPFG-EFFASGCMDTNLKIWDIRKK--G--CIHTY---K-GHTRGINTIRFTPD--GRWVVSG 160 (1074)
Q Consensus 93 -i~tl~~h~~~VtsLafSPdg-~~LaSgS~DGsI~IWDi~tg--~--~v~~l---~-~h~~~VtsLafSPd--G~~LaSg 160 (1074)
....-.+...+..+.+.... ..++++.....|.+|.+... + ....+ . ....++..+..+++ ...++.|
T Consensus 92 ~~~~~~~~tkGc~~~~v~~~~~~~~l~~A~~~~i~l~~~~~~~~~f~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~lcvG 171 (302)
T smart00036 92 NVLTKIPDTKGCHLCAVVNGKRSLFLCVALQSSVVLLQWYNPLKKFKLFKSKFLFPLISPVPVFVELVSSSFERPGICIG 171 (302)
T ss_pred cceEeCCcCCceEEEEEEcCCCcEEEEEEcCCeEEEEEccChhhhhhhhcccccccCCCCccceEeeecccccceEEEEE
Confidence 11112333334444444222 23344445566766644321 1 11110 0 01122333333332 3467777
Q ss_pred ECCCeEEEEECCC--CceEE---E--eeecC-CCeEEEEEcCCCcEEEEEeCCCeEEEEECCCCcEE-EeeCCCCCCeEE
Q 001462 161 GFDNVVKVWDLTA--GKLLH---D--FKFHE-GHIRSIDFHPLEFLLATGSADRTVKFWDLETFELI-GSTRPEVTGVHA 231 (1074)
Q Consensus 161 s~DGsI~VWDl~t--gk~v~---~--~~~h~-g~ItsLafSPdg~lLaTGS~DGtI~IWDl~tg~~i-~t~~~~~~~Its 231 (1074)
+..+...++++.. ..... . ..... .++....+ +++.+|++- |....+.|....... .....-.....+
T Consensus 172 ~~~~~~~~~~~~~~~~~~~d~sl~~~~~~~~~~p~~i~~l-~~~e~Llc~--~~~~v~Vn~~G~~~~r~~~l~w~~~p~~ 248 (302)
T smart00036 172 SDKGGGDVVQFHESLVSKEDLSLPFLSEETSLKPISVVQV-PRDEFLLCY--DEFGVFVNLYGKRRSRNPILHWEFMPES 248 (302)
T ss_pred EcCCCCeEEEEeecccccccccccccccccccCceEEEEE-CCCeEEEEE--CcEEEEEeCCCCccccceEEEcCCcccE
Confidence 6642344444432 11000 0 01011 23333333 345555433 445555565531111 111112234466
Q ss_pred EEEecCCCEEEEEECCcEEEEEecCCeeeecccc
Q 001462 232 ITFHPDGRTLFSGFDDNLKVYSWEPVICHDSVDM 265 (1074)
Q Consensus 232 IafSPDG~~LasGsd~~I~Vwd~~s~~~~~~l~~ 265 (1074)
+++. ..||++-.++.|.|+++.++.....+..
T Consensus 249 ~~~~--~pyll~~~~~~ievr~l~~~~l~q~i~~ 280 (302)
T smart00036 249 FAYH--SPYLLAFHDNGIEIRSIKTGELLQELAD 280 (302)
T ss_pred EEEE--CCEEEEEcCCcEEEEECCCCceEEEEec
Confidence 6666 3677777788899999998876665543
|
Unpublished observations. |
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=93.17 E-value=28 Score=43.01 Aligned_cols=148 Identities=14% Similarity=0.156 Sum_probs=86.5
Q ss_pred CCEEEEEEecCCCcEEEEEE--CCCeEEEEECCCCceEEEeeCCCCCeEEEEEcCCC----CEEEEEEcCCeEEEEEcC-
Q 001462 16 ANVNCISIGKKACRFLITGG--DDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAE----VLVLAGASTGVIKLWDLE- 88 (1074)
Q Consensus 16 ~~Vt~IafSPdg~~lLaTGs--~DGtV~IWDl~t~k~l~sl~~hs~~ItsLafSpdg----~~LatGs~DG~I~VWDl~- 88 (1074)
.+|..++|. ||.+.+++.- .+|.+++= +.. ..+.-..|+.+.|.|-+ ..|++.....+|.||.+.
T Consensus 20 HPvhGlaWT-DGkqVvLT~L~l~~gE~kfG---ds~----viGqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~ 91 (671)
T PF15390_consen 20 HPVHGLAWT-DGKQVVLTDLQLHNGEPKFG---DSK----VIGQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCP 91 (671)
T ss_pred ccccceEec-CCCEEEEEeeeeeCCccccC---Ccc----EeeccceeeeeeecCcccCCCCceEEEeccceEEEEEecc
Confidence 367788886 4445555532 12222221 111 22344568999999843 244555567889999885
Q ss_pred ----CCeeEEEEeCC-CC--C--eEEEEEcCCCCEEEEEECCCeEEEEECCCC--eEEEEEeCCCCCeEEEEEcCCCCEE
Q 001462 89 ----ESKMVRTLTGH-KS--N--CTAVEFHPFGEFFASGCMDTNLKIWDIRKK--GCIHTYKGHTRGINTIRFTPDGRWV 157 (1074)
Q Consensus 89 ----tgk~i~tl~~h-~~--~--VtsLafSPdg~~LaSgS~DGsI~IWDi~tg--~~v~~l~~h~~~VtsLafSPdG~~L 157 (1074)
.++.+..-.++ .+ + -..+.|||....|++-.....=.+++++.. .....++ ..+.|.|.+|.+||..|
T Consensus 92 s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~-~~G~IhCACWT~DG~RL 170 (671)
T PF15390_consen 92 STTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIK-TSGLIHCACWTKDGQRL 170 (671)
T ss_pred CccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEecc-CCceEEEEEecCcCCEE
Confidence 22322221111 11 1 235789999988877665554455665433 2333344 45679999999999987
Q ss_pred EEEE-CCCeEEEEECC
Q 001462 158 VSGG-FDNVVKVWDLT 172 (1074)
Q Consensus 158 aSgs-~DGsI~VWDl~ 172 (1074)
+++- ..=.-++||-.
T Consensus 171 VVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 171 VVAVGSSLHSYIWDSA 186 (671)
T ss_pred EEEeCCeEEEEEecCc
Confidence 6654 33356788853
|
|
| >PLN02153 epithiospecifier protein | Back alignment and domain information |
|---|
Probab=92.91 E-value=13 Score=42.73 Aligned_cols=107 Identities=12% Similarity=0.129 Sum_probs=51.8
Q ss_pred CCCEEEEEECC-----CeEEEEECCCCeEEE--EEeC---CCCCeEEEEEcCCCCEEEEEECC-----------CeEEEE
Q 001462 111 FGEFFASGCMD-----TNLKIWDIRKKGCIH--TYKG---HTRGINTIRFTPDGRWVVSGGFD-----------NVVKVW 169 (1074)
Q Consensus 111 dg~~LaSgS~D-----GsI~IWDi~tg~~v~--~l~~---h~~~VtsLafSPdG~~LaSgs~D-----------GsI~VW 169 (1074)
+++.++.|+.+ ..+.+||+.+..-.. .+.. ........+..-++++++.|+.+ ..|.+|
T Consensus 85 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~y 164 (341)
T PLN02153 85 GTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAY 164 (341)
T ss_pred CCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEE
Confidence 46666777643 357889987654322 1100 11111111222356666777753 247788
Q ss_pred ECCCCceEEEeeec----C-CCeEEEEEcCCCcEEEEEeCC-------------CeEEEEECCCCcEE
Q 001462 170 DLTAGKLLHDFKFH----E-GHIRSIDFHPLEFLLATGSAD-------------RTVKFWDLETFELI 219 (1074)
Q Consensus 170 Dl~tgk~v~~~~~h----~-g~ItsLafSPdg~lLaTGS~D-------------GtI~IWDl~tg~~i 219 (1074)
|..+.+-.. +... . ..-.+++. -++++++.|+.+ ..+.+||+.+.+..
T Consensus 165 d~~~~~W~~-l~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~ 230 (341)
T PLN02153 165 NIADGKWVQ-LPDPGENFEKRGGAGFAV-VQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWT 230 (341)
T ss_pred ECCCCeEee-CCCCCCCCCCCCcceEEE-ECCeEEEEeccccccccCCccceecCceEEEEcCCCcEE
Confidence 887654321 1110 0 00112222 245666655432 35888998876543
|
|
| >KOG2247 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.89 E-value=0.017 Score=67.92 Aligned_cols=144 Identities=13% Similarity=0.158 Sum_probs=102.1
Q ss_pred EEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEE-EEECCCeEEEEECCCCceEEEee-
Q 001462 104 TAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVV-SGGFDNVVKVWDLTAGKLLHDFK- 181 (1074)
Q Consensus 104 tsLafSPdg~~LaSgS~DGsI~IWDi~tg~~v~~l~~h~~~VtsLafSPdG~~La-Sgs~DGsI~VWDl~tgk~v~~~~- 181 (1074)
....|-+.+..++.++.+..+..|| +.++...... ..+....++|..+|..++ .+-..+.+.+||+.+.... ++.
T Consensus 38 i~~~w~~e~~nlavaca~tiv~~YD-~agq~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytq-qLE~ 114 (615)
T KOG2247|consen 38 IIHRWRPEGHNLAVACANTIVIYYD-KAGQVILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQ-QLES 114 (615)
T ss_pred ceeeEecCCCceehhhhhhHHHhhh-hhcceecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHH-HHhc
Confidence 3457888777799988899999999 4455444443 345567888988887554 4556789999999754321 111
Q ss_pred ecCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCCcEEEeeCCCCCCeEEEEEecCCCEEEEEECCcEE
Q 001462 182 FHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGFDDNLK 250 (1074)
Q Consensus 182 ~h~g~ItsLafSPdg~lLaTGS~DGtI~IWDl~tg~~i~t~~~~~~~ItsIafSPDG~~LasGsd~~I~ 250 (1074)
+....-.-+.|++.+..++.|...|.+.||+..+...+.....|.-.+++++|.+.+..+..+.+..+.
T Consensus 115 gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~vil~dcd~~L~ 183 (615)
T KOG2247|consen 115 GGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVILCDCDNTLS 183 (615)
T ss_pred cCcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccceeeecCcHHHHH
Confidence 111111226799988999999899999999988877766666677788999999998877776665433
|
|
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.89 E-value=0.27 Score=53.40 Aligned_cols=102 Identities=20% Similarity=0.280 Sum_probs=65.6
Q ss_pred cEEEEEECCCeEEEEECCCCceEEE-eeCCCCCeEEE-EEcCCCCEEEEEEcCCeEEEEEcCCCeeEEEEeCCC-CCeEE
Q 001462 29 RFLITGGDDQKVNLWAIGKPTALMS-LCGLSSPVDSV-AFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHK-SNCTA 105 (1074)
Q Consensus 29 ~lLaTGs~DGtV~IWDl~t~k~l~s-l~~hs~~ItsL-afSpdg~~LatGs~DG~I~VWDl~tgk~i~tl~~h~-~~Vts 105 (1074)
.-+++|+.+|.|++|..+-...... ...-...|-++ .--.++.+.++++.+|.|+.|++.-++.+.....|. .++..
T Consensus 71 ~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~ 150 (238)
T KOG2444|consen 71 AKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEE 150 (238)
T ss_pred ceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcce
Confidence 4688999999999998862211111 11122233322 222355688999999999999999888888777776 55555
Q ss_pred EEEcCCCCEEEEE--ECCCeEEEEECC
Q 001462 106 VEFHPFGEFFASG--CMDTNLKIWDIR 130 (1074)
Q Consensus 106 LafSPdg~~LaSg--S~DGsI~IWDi~ 130 (1074)
......+.+++.+ +.|..++.|++.
T Consensus 151 ~ivv~sd~~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 151 LIVVGSDEFLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred eEEecCCceEEeeccccchhhhhcchh
Confidence 5555555555555 556666666654
|
|
| >COG4257 Vgb Streptogramin lyase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=92.46 E-value=21 Score=40.29 Aligned_cols=199 Identities=15% Similarity=0.097 Sum_probs=117.4
Q ss_pred CeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEE-E-
Q 001462 102 NCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLH-D- 179 (1074)
Q Consensus 102 ~VtsLafSPdg~~LaSgS~DGsI~IWDi~tg~~v~~l~~h~~~VtsLafSPdG~~LaSgs~DGsI~VWDl~tgk~v~-~- 179 (1074)
.-..++-.|||..-+++...|.|--.|..+|+....--+.......|...|||..-++-+.. -|.-+|-++.+... .
T Consensus 63 ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~f~l 141 (353)
T COG4257 63 APFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTRFPL 141 (353)
T ss_pred CccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEEeec
Confidence 34567888999888888888889889999998776665566667788889998765553322 56666665554321 1
Q ss_pred -eeecCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCCcEEEeeCC-CCCCeEEEEEecCCCEEEEEECCcEEEEEecCC
Q 001462 180 -FKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRP-EVTGVHAITFHPDGRTLFSGFDDNLKVYSWEPV 257 (1074)
Q Consensus 180 -~~~h~g~ItsLafSPdg~lLaTGS~DGtI~IWDl~tg~~i~t~~~-~~~~ItsIafSPDG~~LasGsd~~I~Vwd~~s~ 257 (1074)
.+..........|.+.|++-+++.. |.---.|...+ .+..+.. .......|+..|+|...++...+. .|-.+++.
T Consensus 142 p~~~a~~nlet~vfD~~G~lWFt~q~-G~yGrLdPa~~-~i~vfpaPqG~gpyGi~atpdGsvwyaslagn-aiaridp~ 218 (353)
T COG4257 142 PLEHADANLETAVFDPWGNLWFTGQI-GAYGRLDPARN-VISVFPAPQGGGPYGICATPDGSVWYASLAGN-AIARIDPF 218 (353)
T ss_pred ccccCCCcccceeeCCCccEEEeecc-ccceecCcccC-ceeeeccCCCCCCcceEECCCCcEEEEecccc-ceEEcccc
Confidence 1223456788899999998888753 22111122111 1222222 223457889999999888864443 23333332
Q ss_pred eeeec-ccc----CCceeeEEEecCCCEEEEEECCCeEEEEEcCCCceeeee
Q 001462 258 ICHDS-VDM----GWSTLGDLCINDGKLLGCSFYRNSVGIWVADVSHVEPYG 304 (1074)
Q Consensus 258 ~~~~~-l~~----~~s~~~~l~spDGklLAsgs~DGsV~IWDld~~~l~~~~ 304 (1074)
..+.. +.. ..........+.|..-++....+.++-+|-....-..|.
T Consensus 219 ~~~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~sW~eyp 270 (353)
T COG4257 219 AGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTSWIEYP 270 (353)
T ss_pred cCCcceecCCCcccccccccccCccCcEEEeccCCceeeEeCcccccceeee
Confidence 22211 111 111122223356777777666777777766544434443
|
|
| >PF14727 PHTB1_N: PTHB1 N-terminus | Back alignment and domain information |
|---|
Probab=92.28 E-value=32 Score=41.40 Aligned_cols=142 Identities=11% Similarity=0.145 Sum_probs=87.0
Q ss_pred CCCEEEEEEcCCeEEEEEcCCCe-----eEEEEeCCCCCeEEEEEcC-----CCCEEEEEECCCeEEEEECCC--Ce---
Q 001462 69 AEVLVLAGASTGVIKLWDLEESK-----MVRTLTGHKSNCTAVEFHP-----FGEFFASGCMDTNLKIWDIRK--KG--- 133 (1074)
Q Consensus 69 dg~~LatGs~DG~I~VWDl~tgk-----~i~tl~~h~~~VtsLafSP-----dg~~LaSgS~DGsI~IWDi~t--g~--- 133 (1074)
+...|++|+..|.++||+...+. .+-+. ....+|..+.+-. +...||+ -.-..+.||.+.. |.
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~-~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~ 113 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLET-QLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEH 113 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCccEEEEE-ecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCccc
Confidence 34689999999999999986533 22222 3567888877643 2234555 4567788887621 11
Q ss_pred ----EEEEEeCCC--CCeEEEEEcC----C-CCEEEEEECCCeEEEEECCCCceEEEeeecCCCeEEEEEcCCCcEEEEE
Q 001462 134 ----CIHTYKGHT--RGINTIRFTP----D-GRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATG 202 (1074)
Q Consensus 134 ----~v~~l~~h~--~~VtsLafSP----d-G~~LaSgs~DGsI~VWDl~tgk~v~~~~~h~g~ItsLafSPdg~lLaTG 202 (1074)
.+..+..|. .....+++-| . ..++++-+.||.+.+|+-+..-....+.. ---...++|.+.-..|+++
T Consensus 114 g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~tDsfvt~ 192 (418)
T PF14727_consen 114 GNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPRTDSFVTA 192 (418)
T ss_pred CcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeecCCEEEEe
Confidence 112222222 2234444433 2 35788889999999999655443333332 2223456788888888888
Q ss_pred eCCCeEEEEEC
Q 001462 203 SADRTVKFWDL 213 (1074)
Q Consensus 203 S~DGtI~IWDl 213 (1074)
+.+..|..|..
T Consensus 193 sss~~l~~Yky 203 (418)
T PF14727_consen 193 SSSWTLECYKY 203 (418)
T ss_pred cCceeEEEecH
Confidence 88888888865
|
|
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.26 E-value=0.16 Score=63.37 Aligned_cols=204 Identities=16% Similarity=0.257 Sum_probs=114.6
Q ss_pred eCCCCCeEEEEEcC-CCCEEEEEEcCCeEEEEEcC--CCeeEEEE-----eCCCCCeEEEEEcC---CCCEEEEEECCCe
Q 001462 55 CGLSSPVDSVAFDS-AEVLVLAGASTGVIKLWDLE--ESKMVRTL-----TGHKSNCTAVEFHP---FGEFFASGCMDTN 123 (1074)
Q Consensus 55 ~~hs~~ItsLafSp-dg~~LatGs~DG~I~VWDl~--tgk~i~tl-----~~h~~~VtsLafSP---dg~~LaSgS~DGs 123 (1074)
+++.+.+..+.|-. +...++ -.-|.+.|||+. .|+....+ ......+.-+.|.| +.-++.++..+|.
T Consensus 129 kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~ 206 (1283)
T KOG1916|consen 129 KGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGE 206 (1283)
T ss_pred hcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCc
Confidence 45666777777743 111111 223678899875 45433222 23344556666665 4556777777788
Q ss_pred EEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeeecCCCeEEEEEcCCCcEEEEEe
Q 001462 124 LKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGS 203 (1074)
Q Consensus 124 I~IWDi~tg~~v~~l~~h~~~VtsLafSPdG~~LaSgs~DGsI~VWDl~tgk~v~~~~~h~g~ItsLafSPdg~lLaTGS 203 (1074)
|.+..+..... ..+.+|...+..++|-..|..++.+ ++|||..++.++
T Consensus 207 i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~-------------------------------lSpDGtv~a~a~ 254 (1283)
T KOG1916|consen 207 IRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLAS-------------------------------LSPDGTVFAWAI 254 (1283)
T ss_pred eeEeeechHHH-HHHHhcCCCcccHHHHhhchhhhee-------------------------------eCCCCcEEEEee
Confidence 88777654332 3345577777787777665433332 688888888888
Q ss_pred CCCeEEEEECC-----CCcEEEeeCCCCCC-eEEEEEecC-------C--CEEEEEEC--CcEEEEEecCCeeeeccccC
Q 001462 204 ADRTVKFWDLE-----TFELIGSTRPEVTG-VHAITFHPD-------G--RTLFSGFD--DNLKVYSWEPVICHDSVDMG 266 (1074)
Q Consensus 204 ~DGtI~IWDl~-----tg~~i~t~~~~~~~-ItsIafSPD-------G--~~LasGsd--~~I~Vwd~~s~~~~~~l~~~ 266 (1074)
.||.+++|.+- ...++.....|.+. -.|..|+.+ | .+++++.| ..+++|.-..+.|+ ++..
T Consensus 255 ~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl--l~~~ 332 (1283)
T KOG1916|consen 255 SDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL--LDKL 332 (1283)
T ss_pred cCCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh--hhhc
Confidence 88887777653 23344555555532 222223221 2 34455544 34899998888876 2222
Q ss_pred CceeeEEEecCCCE------------EEEEECCCeEEEEE
Q 001462 267 WSTLGDLCINDGKL------------LGCSFYRNSVGIWV 294 (1074)
Q Consensus 267 ~s~~~~l~spDGkl------------LAsgs~DGsV~IWD 294 (1074)
-..+..+.-+||+. ++....++.|.+|-
T Consensus 333 ~d~v~iV~p~~~~v~~~~~~~~~~~~~v~r~v~~~i~~~q 372 (1283)
T KOG1916|consen 333 IDGVQIVGPHDGEVTDLSMCQWMTTRLVSRSVDGTIKIWQ 372 (1283)
T ss_pred ccceEeecCCCccccchhhhHHHHHHHHHhhhHHHHHHhh
Confidence 22223333344432 22345678888883
|
|
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=92.23 E-value=3.5 Score=51.55 Aligned_cols=111 Identities=16% Similarity=0.198 Sum_probs=73.2
Q ss_pred CCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEee-ecCCCeEEEEEc--CCCcEEEEEeCCCeEEEEECC-----
Q 001462 143 RGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFK-FHEGHIRSIDFH--PLEFLLATGSADRTVKFWDLE----- 214 (1074)
Q Consensus 143 ~~VtsLafSPdG~~LaSgs~DGsI~VWDl~tgk~v~~~~-~h~g~ItsLafS--Pdg~lLaTGS~DGtI~IWDl~----- 214 (1074)
..+.-+.-+.-++..++-+....+.|||...+....+-. ...+.|.++.|. |+|..+++.|..+.|.+|.-.
T Consensus 30 ~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~ 109 (631)
T PF12234_consen 30 SNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYT 109 (631)
T ss_pred CCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhh
Confidence 344455555555555555555689999999887654433 346789999986 578888888888899988542
Q ss_pred ----CCcEEEee--CCC-CCCeEEEEEecCCCEEEEEECCcEEEEEe
Q 001462 215 ----TFELIGST--RPE-VTGVHAITFHPDGRTLFSGFDDNLKVYSW 254 (1074)
Q Consensus 215 ----tg~~i~t~--~~~-~~~ItsIafSPDG~~LasGsd~~I~Vwd~ 254 (1074)
++..+..+ ..+ ..+|.+..|.++|. |++|+++.+.||+-
T Consensus 110 ~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~-LvV~sGNqlfv~dk 155 (631)
T PF12234_consen 110 NKGPSWAPIRKIDISSHTPHPIGDSIWLKDGT-LVVGSGNQLFVFDK 155 (631)
T ss_pred cCCcccceeEEEEeecCCCCCccceeEecCCe-EEEEeCCEEEEECC
Confidence 12233332 222 25688999999986 45566777777753
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=91.98 E-value=4 Score=51.05 Aligned_cols=110 Identities=15% Similarity=0.229 Sum_probs=72.6
Q ss_pred CeEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeeEEEEe-CCCCCeEEEEEc--CCCCEEEEEECCCeEEEEECC------
Q 001462 60 PVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLT-GHKSNCTAVEFH--PFGEFFASGCMDTNLKIWDIR------ 130 (1074)
Q Consensus 60 ~ItsLafSpdg~~LatGs~DG~I~VWDl~tgk~i~tl~-~h~~~VtsLafS--Pdg~~LaSgS~DGsI~IWDi~------ 130 (1074)
.+.-+.-+.-++..++.+....+.|||...+.....-. ...+.|.++.|. |+|+.+++.|..+.|.+|.-.
T Consensus 31 ~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~ 110 (631)
T PF12234_consen 31 NPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTN 110 (631)
T ss_pred CcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhc
Confidence 34444444555555555555689999998887443322 357889999995 688888888889999999532
Q ss_pred ---CCeEEEEE--eCCC-CCeEEEEEcCCCCEEEEEECCCeEEEEEC
Q 001462 131 ---KKGCIHTY--KGHT-RGINTIRFTPDGRWVVSGGFDNVVKVWDL 171 (1074)
Q Consensus 131 ---tg~~v~~l--~~h~-~~VtsLafSPdG~~LaSgs~DGsI~VWDl 171 (1074)
....+..+ ..+. .+|.+..|.++|.+++.+ +..+.|+|-
T Consensus 111 ~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s--GNqlfv~dk 155 (631)
T PF12234_consen 111 KGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS--GNQLFVFDK 155 (631)
T ss_pred CCcccceeEEEEeecCCCCCccceeEecCCeEEEEe--CCEEEEECC
Confidence 11223332 2233 678999999999655443 467888874
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >TIGR03547 muta_rot_YjhT mutatrotase, YjhT family | Back alignment and domain information |
|---|
Probab=91.88 E-value=28 Score=40.01 Aligned_cols=53 Identities=11% Similarity=0.038 Sum_probs=26.0
Q ss_pred CCCEEEEEEcC-----------CeEEEEEcCCCeeEEEEeCCCCCeE--EEEEcCCCCEEEEEECC
Q 001462 69 AEVLVLAGAST-----------GVIKLWDLEESKMVRTLTGHKSNCT--AVEFHPFGEFFASGCMD 121 (1074)
Q Consensus 69 dg~~LatGs~D-----------G~I~VWDl~tgk~i~tl~~h~~~Vt--sLafSPdg~~LaSgS~D 121 (1074)
++.+.++|+.+ ..+..||..+.+-............ +....-+++.++.|+.+
T Consensus 63 ~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~ 128 (346)
T TIGR03547 63 DGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVN 128 (346)
T ss_pred CCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCCCCCCcccceeEEEEeCCEEEEEcCcC
Confidence 56667777653 2477788776542221111111111 11213467777777654
|
Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein. |
| >smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2 | Back alignment and domain information |
|---|
Probab=91.68 E-value=29 Score=39.70 Aligned_cols=229 Identities=8% Similarity=0.007 Sum_probs=107.1
Q ss_pred CCCEEEEEEcCCeEEEEEcCC--CeeEEEEeCCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEECCCCeE-----------
Q 001462 69 AEVLVLAGASTGVIKLWDLEE--SKMVRTLTGHKSNCTAVEFHPFGEFFASGC-MDTNLKIWDIRKKGC----------- 134 (1074)
Q Consensus 69 dg~~LatGs~DG~I~VWDl~t--gk~i~tl~~h~~~VtsLafSPdg~~LaSgS-~DGsI~IWDi~tg~~----------- 134 (1074)
++++|+.|+.+| +.+.++.. ++..+.+ +...|.++...+..+.|++-+ ....++.|++..-..
T Consensus 12 ~~~~lL~GTe~G-ly~~~~~~~~~~~~kl~--~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~~~~~~ 88 (302)
T smart00036 12 DGKWLLVGTEEG-LYVLNISDQPGTLEKLI--GRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSALVEKKEALGSARLV 88 (302)
T ss_pred CCcEEEEEeCCc-eEEEEcccCCCCeEEec--CcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhhhhhhccCCcccc
Confidence 346899999999 55556654 3344433 466899999998877666554 334599999842211
Q ss_pred ----EEEEeCCCCCeEEEEEcCCC-CEEEEEECCCeEEEEECCCC----ceEEEe---e-ecCCCeEEEEEcCC--CcEE
Q 001462 135 ----IHTYKGHTRGINTIRFTPDG-RWVVSGGFDNVVKVWDLTAG----KLLHDF---K-FHEGHIRSIDFHPL--EFLL 199 (1074)
Q Consensus 135 ----v~~l~~h~~~VtsLafSPdG-~~LaSgs~DGsI~VWDl~tg----k~v~~~---~-~h~g~ItsLafSPd--g~lL 199 (1074)
....-.+..+...+++.... ..++++.....|.++.+... .....+ . ....++..+..+++ ...|
T Consensus 89 ~~~~~~~~~~~tkGc~~~~v~~~~~~~~l~~A~~~~i~l~~~~~~~~~f~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~l 168 (302)
T smart00036 89 IRKNVLTKIPDTKGCHLCAVVNGKRSLFLCVALQSSVVLLQWYNPLKKFKLFKSKFLFPLISPVPVFVELVSSSFERPGI 168 (302)
T ss_pred ccccceEeCCcCCceEEEEEEcCCCcEEEEEEcCCeEEEEEccChhhhhhhhcccccccCCCCccceEeeecccccceEE
Confidence 01111233333333333222 23344455566666544322 112211 0 11223333433433 4567
Q ss_pred EEEeCCCeEEEEECCC--CcEEE---e--eCCCCCCeEEEEEecCCCEEEEEECCcEEEEEecCCeeeeccccCCceeeE
Q 001462 200 ATGSADRTVKFWDLET--FELIG---S--TRPEVTGVHAITFHPDGRTLFSGFDDNLKVYSWEPVICHDSVDMGWSTLGD 272 (1074)
Q Consensus 200 aTGS~DGtI~IWDl~t--g~~i~---t--~~~~~~~ItsIafSPDG~~LasGsd~~I~Vwd~~s~~~~~~l~~~~s~~~~ 272 (1074)
..|+..+...++++.. ...-. . .........++..-+++.+|++-.+.+ .+.+.............|.....
T Consensus 169 cvG~~~~~~~~~~~~~~~~~~~d~sl~~~~~~~~~~p~~i~~l~~~e~Llc~~~~~-v~Vn~~G~~~~r~~~l~w~~~p~ 247 (302)
T smart00036 169 CIGSDKGGGDVVQFHESLVSKEDLSLPFLSEETSLKPISVVQVPRDEFLLCYDEFG-VFVNLYGKRRSRNPILHWEFMPE 247 (302)
T ss_pred EEEEcCCCCeEEEEeecccccccccccccccccccCceEEEEECCCeEEEEECcEE-EEEeCCCCccccceEEEcCCccc
Confidence 7777642344455432 11000 0 011110233344444555555543333 33344321111111222332212
Q ss_pred EEecCCCEEEEEECCCeEEEEEcCCCceee
Q 001462 273 LCINDGKLLGCSFYRNSVGIWVADVSHVEP 302 (1074)
Q Consensus 273 l~spDGklLAsgs~DGsV~IWDld~~~l~~ 302 (1074)
.+.-...+|+.- .++.|.||++.++.+..
T Consensus 248 ~~~~~~pyll~~-~~~~ievr~l~~~~l~q 276 (302)
T smart00036 248 SFAYHSPYLLAF-HDNGIEIRSIKTGELLQ 276 (302)
T ss_pred EEEEECCEEEEE-cCCcEEEEECCCCceEE
Confidence 222223555544 35669999998776543
|
Unpublished observations. |
| >TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein | Back alignment and domain information |
|---|
Probab=91.35 E-value=28 Score=39.77 Aligned_cols=105 Identities=13% Similarity=0.194 Sum_probs=52.7
Q ss_pred CCCEEEEEEcC-----CeEEEEEcCCCee---EEEEeCCCCCe--EEEEEcCCCCEEEEEEC-----CCeEEEEECCCCe
Q 001462 69 AEVLVLAGAST-----GVIKLWDLEESKM---VRTLTGHKSNC--TAVEFHPFGEFFASGCM-----DTNLKIWDIRKKG 133 (1074)
Q Consensus 69 dg~~LatGs~D-----G~I~VWDl~tgk~---i~tl~~h~~~V--tsLafSPdg~~LaSgS~-----DGsI~IWDi~tg~ 133 (1074)
++.+++.|+.+ ..+..||+.+.+- ...+..-.... .+++.. +++.++.|+. ...+..||+.+.+
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~-~~~iYv~GG~~~~~~~~~v~~yd~~~~~ 150 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYK-DGTLYVGGGNRNGKPSNKSYLFNLETQE 150 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEE-CCEEEEEeCcCCCccCceEEEEcCCCCC
Confidence 45566677654 3566777766542 12222111111 222222 4666666664 2358888987654
Q ss_pred EEEE--EeCCCCCeEEEEEcCCCCEEEEEECCC----eEEEEECCCCc
Q 001462 134 CIHT--YKGHTRGINTIRFTPDGRWVVSGGFDN----VVKVWDLTAGK 175 (1074)
Q Consensus 134 ~v~~--l~~h~~~VtsLafSPdG~~LaSgs~DG----sI~VWDl~tgk 175 (1074)
-... +.. .......+..-++++++.|+.++ .+.+||..+.+
T Consensus 151 W~~~~~~p~-~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~ 197 (323)
T TIGR03548 151 WFELPDFPG-EPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQ 197 (323)
T ss_pred eeECCCCCC-CCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCe
Confidence 3221 111 11112222233567777777654 35688887654
|
Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat. |
| >PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins | Back alignment and domain information |
|---|
Probab=91.25 E-value=11 Score=46.10 Aligned_cols=145 Identities=14% Similarity=0.086 Sum_probs=78.0
Q ss_pred CCCeEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeeEEEEeCCCCC---eEEEEEcCCC
Q 001462 36 DDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSN---CTAVEFHPFG 112 (1074)
Q Consensus 36 ~DGtV~IWDl~t~k~l~sl~~hs~~ItsLafSpdg~~LatGs~DG~I~VWDl~tgk~i~tl~~h~~~---VtsLafSPdg 112 (1074)
..+...++|. .|.....+.........+.+.++|.+++... +.+..+|+. |+.+......... -..+.+.|+|
T Consensus 126 ~~~~~~~iD~-~G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~--~~~~e~D~~-G~v~~~~~l~~~~~~~HHD~~~l~nG 201 (477)
T PF05935_consen 126 SSSYTYLIDN-NGDVRWYLPLDSGSDNSFKQLPNGNLLIGSG--NRLYEIDLL-GKVIWEYDLPGGYYDFHHDIDELPNG 201 (477)
T ss_dssp BEEEEEEEET-TS-EEEEE-GGGT--SSEEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE-B-S-EEE-TTS
T ss_pred CCceEEEECC-CccEEEEEccCccccceeeEcCCCCEEEecC--CceEEEcCC-CCEEEeeecCCcccccccccEECCCC
Confidence 4455666664 4455544432222222266778998876654 789999984 6666655432322 3568888999
Q ss_pred CEEEEEEC-------------CCeEEEEECCCCeEEEEEeC--CC-------------------------CCeEEEEEcC
Q 001462 113 EFFASGCM-------------DTNLKIWDIRKKGCIHTYKG--HT-------------------------RGINTIRFTP 152 (1074)
Q Consensus 113 ~~LaSgS~-------------DGsI~IWDi~tg~~v~~l~~--h~-------------------------~~VtsLafSP 152 (1074)
++|+.+.. .-.|..+| .+|+.+..+.. |- -.+.++.+.+
T Consensus 202 n~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~ 280 (477)
T PF05935_consen 202 NLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDP 280 (477)
T ss_dssp -EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEET
T ss_pred CEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeC
Confidence 99888871 12377777 77877766531 10 1377899988
Q ss_pred CCCEEEEEEC-CCeEEEEECCCCceEEEeeecCC
Q 001462 153 DGRWVVSGGF-DNVVKVWDLTAGKLLHDFKFHEG 185 (1074)
Q Consensus 153 dG~~LaSgs~-DGsI~VWDl~tgk~v~~~~~h~g 185 (1074)
....|+..+. -..|...|..+++..+.+-.+.+
T Consensus 281 ~dd~iivSsR~~s~V~~Id~~t~~i~Wilg~~~~ 314 (477)
T PF05935_consen 281 SDDSIIVSSRHQSAVIKIDYRTGKIKWILGPPGG 314 (477)
T ss_dssp TTTEEEEEETTT-EEEEEE-TTS-EEEEES-STT
T ss_pred CCCeEEEEcCcceEEEEEECCCCcEEEEeCCCCC
Confidence 4444544454 45899999899998888876543
|
Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A. |
| >TIGR03547 muta_rot_YjhT mutatrotase, YjhT family | Back alignment and domain information |
|---|
Probab=91.15 E-value=29 Score=39.92 Aligned_cols=53 Identities=17% Similarity=0.310 Sum_probs=26.2
Q ss_pred CCCEEEEEECC-----------CeEEEEECCCCeEEEEEeCCCCCeEEE-EE-cCCCCEEEEEECC
Q 001462 111 FGEFFASGCMD-----------TNLKIWDIRKKGCIHTYKGHTRGINTI-RF-TPDGRWVVSGGFD 163 (1074)
Q Consensus 111 dg~~LaSgS~D-----------GsI~IWDi~tg~~v~~l~~h~~~VtsL-af-SPdG~~LaSgs~D 163 (1074)
+++.++.|+.+ ..+..||..+..-...-.......... +. .-++++.+.|+.+
T Consensus 63 ~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~ 128 (346)
T TIGR03547 63 DGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVN 128 (346)
T ss_pred CCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCCCCCCcccceeEEEEeCCEEEEEcCcC
Confidence 56777777643 247778877654322111111111111 11 2367777777754
|
Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein. |
| >PLN02153 epithiospecifier protein | Back alignment and domain information |
|---|
Probab=91.01 E-value=35 Score=39.35 Aligned_cols=182 Identities=15% Similarity=0.164 Sum_probs=85.6
Q ss_pred cEEEEEECC-------CeEEEEECCCCceEEEeeCC---CC----CeEEEEEcCCCCEEEEEEcC-----CeEEEEEcCC
Q 001462 29 RFLITGGDD-------QKVNLWAIGKPTALMSLCGL---SS----PVDSVAFDSAEVLVLAGAST-----GVIKLWDLEE 89 (1074)
Q Consensus 29 ~lLaTGs~D-------GtV~IWDl~t~k~l~sl~~h---s~----~ItsLafSpdg~~LatGs~D-----G~I~VWDl~t 89 (1074)
.+++.|+.+ ..+.+||+.+.+-. .+... .. ....+.+ ++.+++.|+.+ ..+.+||..+
T Consensus 34 ~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~-~~~~~~~~p~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~t 110 (341)
T PLN02153 34 KLYSFGGELKPNEHIDKDLYVFDFNTHTWS-IAPANGDVPRISCLGVRMVAV--GTKLYIFGGRDEKREFSDFYSYDTVK 110 (341)
T ss_pred EEEEECCccCCCCceeCcEEEEECCCCEEE-EcCccCCCCCCccCceEEEEE--CCEEEEECCCCCCCccCcEEEEECCC
Confidence 566667653 24777887664322 11111 00 1112222 45666777653 2578888876
Q ss_pred CeeEE--EEeC---CCCC-eEEEEEcCCCCEEEEEECC-----------CeEEEEECCCCeEEEEEeCCC-----CCeEE
Q 001462 90 SKMVR--TLTG---HKSN-CTAVEFHPFGEFFASGCMD-----------TNLKIWDIRKKGCIHTYKGHT-----RGINT 147 (1074)
Q Consensus 90 gk~i~--tl~~---h~~~-VtsLafSPdg~~LaSgS~D-----------GsI~IWDi~tg~~v~~l~~h~-----~~Vts 147 (1074)
.+-.. .+.. .... -.+++ .-+++.++.|+.+ ..|.+||..+..-.. +.... ..-.+
T Consensus 111 ~~W~~~~~~~~~~~p~~R~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~-l~~~~~~~~~r~~~~ 188 (341)
T PLN02153 111 NEWTFLTKLDEEGGPEARTFHSMA-SDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQ-LPDPGENFEKRGGAG 188 (341)
T ss_pred CEEEEeccCCCCCCCCCceeeEEE-EECCEEEEECCccCCCccCCCcccceEEEEECCCCeEee-CCCCCCCCCCCCcce
Confidence 54221 1110 0111 12222 2346666776643 247788887654221 11110 01112
Q ss_pred EEEcCCCCEEEEEECC-------------CeEEEEECCCCceEEEeee---cCC-CeEEEEEcCCCcEEEEEeCC-----
Q 001462 148 IRFTPDGRWVVSGGFD-------------NVVKVWDLTAGKLLHDFKF---HEG-HIRSIDFHPLEFLLATGSAD----- 205 (1074)
Q Consensus 148 LafSPdG~~LaSgs~D-------------GsI~VWDl~tgk~v~~~~~---h~g-~ItsLafSPdg~lLaTGS~D----- 205 (1074)
++. -++++++.|+.+ ..|.+||..+.+-...-.. ... ...++. .-++.+++.|+..
T Consensus 189 ~~~-~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~r~~~~~~-~~~~~iyv~GG~~~~~~~ 266 (341)
T PLN02153 189 FAV-VQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSARSVFAHA-VVGKYIIIFGGEVWPDLK 266 (341)
T ss_pred EEE-ECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCCCcceeeeE-EECCEEEEECcccCCccc
Confidence 222 256666655432 3588899877653322110 011 111222 2246777777742
Q ss_pred ---------CeEEEEECCCCc
Q 001462 206 ---------RTVKFWDLETFE 217 (1074)
Q Consensus 206 ---------GtI~IWDl~tg~ 217 (1074)
..|..||+.+..
T Consensus 267 ~~~~~~~~~n~v~~~d~~~~~ 287 (341)
T PLN02153 267 GHLGPGTLSNEGYALDTETLV 287 (341)
T ss_pred cccccccccccEEEEEcCccE
Confidence 257788887654
|
|
| >COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.99 E-value=0.56 Score=55.08 Aligned_cols=229 Identities=12% Similarity=0.120 Sum_probs=131.0
Q ss_pred CCcEEEEEECCCeEEEEECCCCc----eEEEeeCCCCCeEEEEEcCCCC--------EEEEEEcCCeEEEEEcCC-----
Q 001462 27 ACRFLITGGDDQKVNLWAIGKPT----ALMSLCGLSSPVDSVAFDSAEV--------LVLAGASTGVIKLWDLEE----- 89 (1074)
Q Consensus 27 g~~lLaTGs~DGtV~IWDl~t~k----~l~sl~~hs~~ItsLafSpdg~--------~LatGs~DG~I~VWDl~t----- 89 (1074)
|..+++.|..+|.+.+..-.-.. .-..+. -.-.-++..+.|+ +.+.+..+....++|...
T Consensus 126 gqp~~alglsngqv~v~qp~~s~t~p~pg~~Fp---~g~~p~aLd~qgr~leh~~~~lalA~~~~~qf~~~~~t~~~~~L 202 (733)
T COG4590 126 GQPWFALGLSNGQVAVVQPQLSHTMPTPGREFP---PGLEPLALDEQGRLLEHPLQQLALALTAEAQFATYDNTQQIQIL 202 (733)
T ss_pred CCceEEEeccCCeEEEEeccccccCCCCCccCC---CCCCccccCcccCcccchHHHhhhccchhhHHHHhhhhhhhhhh
Confidence 55688889999999887542100 001111 1111122233332 333444444444554422
Q ss_pred -------CeeEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEE-EEE-eC-CC---CCeE-EEEEcCCCC
Q 001462 90 -------SKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCI-HTY-KG-HT---RGIN-TIRFTPDGR 155 (1074)
Q Consensus 90 -------gk~i~tl~~h~~~VtsLafSPdg~~LaSgS~DGsI~IWDi~tg~~v-~~l-~~-h~---~~Vt-sLafSPdG~ 155 (1074)
++.+..+......|..+-..|||+.+++-+. ..+.++++.+.... ..+ .. .. ..|. .+.....|.
T Consensus 203 ~g~~t~q~e~i~~L~~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~ 281 (733)
T COG4590 203 RGDRTTQQEIIRLLSVPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGF 281 (733)
T ss_pred hcccCchhhhhhhcCCCccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCce
Confidence 2233334455667888899999998887754 67888887654321 111 11 11 1121 122233566
Q ss_pred EEEEEECCCeEEEE-ECCCCc-----eEEEeeecCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCCcEEEeeCCCCCCe
Q 001462 156 WVVSGGFDNVVKVW-DLTAGK-----LLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGV 229 (1074)
Q Consensus 156 ~LaSgs~DGsI~VW-Dl~tgk-----~v~~~~~h~g~ItsLafSPdg~lLaTGS~DGtI~IWDl~tg~~i~t~~~~~~~I 229 (1074)
-+++++.||.|.-| |.+.+. .++.++.....+..+.-..+.+-++.-+.+|++.++.....+.+-. ......+
T Consensus 282 SLLv~~~dG~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~-~~~~~~~ 360 (733)
T COG4590 282 SLLVVHEDGLVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLF-ERAYQAP 360 (733)
T ss_pred eEEEEcCCCceeeeeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceeh-hhhhcCc
Confidence 78888999988877 554332 2333333333444443333456677778888888876554443322 2223356
Q ss_pred EEEEEecCCCEEEEEECCcEEEEEecCCeee
Q 001462 230 HAITFHPDGRTLFSGFDDNLKVYSWEPVICH 260 (1074)
Q Consensus 230 tsIafSPDG~~LasGsd~~I~Vwd~~s~~~~ 260 (1074)
.-++++|.+.++++-..++++++.+++....
T Consensus 361 ~~~~~Sp~~~~Ll~e~~gki~~~~l~Nr~Pe 391 (733)
T COG4590 361 QLVAMSPNQAYLLSEDQGKIRLAQLENRNPE 391 (733)
T ss_pred ceeeeCcccchheeecCCceEEEEecCCCCC
Confidence 7889999999999998999999999876543
|
|
| >PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12 | Back alignment and domain information |
|---|
Probab=90.91 E-value=33 Score=39.00 Aligned_cols=164 Identities=16% Similarity=0.240 Sum_probs=92.6
Q ss_pred eEEEEEcCCCeeEEEEeCC------CCCeEEEEEcCCC-----CEEEEEE-CCCeEEEEECCCCeEEEEEeC--------
Q 001462 81 VIKLWDLEESKMVRTLTGH------KSNCTAVEFHPFG-----EFFASGC-MDTNLKIWDIRKKGCIHTYKG-------- 140 (1074)
Q Consensus 81 ~I~VWDl~tgk~i~tl~~h------~~~VtsLafSPdg-----~~LaSgS-~DGsI~IWDi~tg~~v~~l~~-------- 140 (1074)
.|.+||+.+++.++.+.-. ...+..+.+.... .+++.+. ..+-|.+||+.+++..+....
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~ 114 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA 114 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence 7889999999988776522 3456777776522 2444443 345799999998876554432
Q ss_pred -----------CCCCeEEEEEcC---CCCEEEEEECCC-eEEEEEC---CCC---------ceEEEeeecCCCeEEEEEc
Q 001462 141 -----------HTRGINTIRFTP---DGRWVVSGGFDN-VVKVWDL---TAG---------KLLHDFKFHEGHIRSIDFH 193 (1074)
Q Consensus 141 -----------h~~~VtsLafSP---dG~~LaSgs~DG-sI~VWDl---~tg---------k~v~~~~~h~g~ItsLafS 193 (1074)
....+..++.+| +|++|+.+...+ .++-... +.. ..+..+-...+....++++
T Consensus 115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D 194 (287)
T PF03022_consen 115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSRKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAID 194 (287)
T ss_dssp EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEEE
T ss_pred cceeccCceEecCCCccccccCCCCCCccEEEEEeCCCCcEEEEEHHHhhCccccccccccccceeccccCCCCceEEEC
Confidence 112355666655 666666665443 2322221 111 1122221112456778899
Q ss_pred CCCcEEEEEeCCCeEEEEECCC------CcEEEeeCCCCCCeEEEEEec--CCCEEEEE
Q 001462 194 PLEFLLATGSADRTVKFWDLET------FELIGSTRPEVTGVHAITFHP--DGRTLFSG 244 (1074)
Q Consensus 194 Pdg~lLaTGS~DGtI~IWDl~t------g~~i~t~~~~~~~ItsIafSP--DG~~LasG 244 (1074)
++|.++++--..+.|..|+..+ .+.+..-...-..+.++.+.+ +|.+.+..
T Consensus 195 ~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~s 253 (287)
T PF03022_consen 195 PNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLS 253 (287)
T ss_dssp TTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE
T ss_pred CCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEE
Confidence 9999998888899999999886 122222222235677888887 55544443
|
5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B. |
| >COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=90.31 E-value=12 Score=40.70 Aligned_cols=172 Identities=10% Similarity=0.060 Sum_probs=97.3
Q ss_pred CCCEEEEEEcC--CeEEEEEcCCCeeEEEEeCCCCCeEEEEEcCCCCEEEE-EECCCeEEEEECCCCeEEEEEeCCCCCe
Q 001462 69 AEVLVLAGAST--GVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFAS-GCMDTNLKIWDIRKKGCIHTYKGHTRGI 145 (1074)
Q Consensus 69 dg~~LatGs~D--G~I~VWDl~tgk~i~tl~~h~~~VtsLafSPdg~~LaS-gS~DGsI~IWDi~tg~~v~~l~~h~~~V 145 (1074)
+|.++.+.+.- ..|++||+.+|+.+..-.-....+..=-...-|++|.. .-.+|.-..||.++.+++..+.- .+.-
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y-~GeG 133 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSY-EGEG 133 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhccccc-CCcc
Confidence 45555555443 47999999999887665422122221111112333332 24578889999988888777653 3334
Q ss_pred EEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeee--cCC---CeEEEEEcCCCcEEEEEeCCCeEEEEECCCCcEEE
Q 001462 146 NTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKF--HEG---HIRSIDFHPLEFLLATGSADRTVKFWDLETFELIG 220 (1074)
Q Consensus 146 tsLafSPdG~~LaSgs~DGsI~VWDl~tgk~v~~~~~--h~g---~ItsLafSPdg~lLaTGS~DGtI~IWDl~tg~~i~ 220 (1074)
+.++. |++-|+.++....++.-|..+......+.. ... .+.-+.|- +|.+.|-.-.+..|...|..+|+.+.
T Consensus 134 WgLt~--d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~sGrV~~ 210 (262)
T COG3823 134 WGLTS--DDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARIDPDSGRVVA 210 (262)
T ss_pred eeeec--CCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEcCCCCcEEE
Confidence 55554 555577776666777777766544333321 111 22333443 45555555555566666777776655
Q ss_pred eeCC------------CCCCeEEEEEecCC-CEEEEE
Q 001462 221 STRP------------EVTGVHAITFHPDG-RTLFSG 244 (1074)
Q Consensus 221 t~~~------------~~~~ItsIafSPDG-~~LasG 244 (1074)
.+.. +..-.+.|++.|++ +++++|
T Consensus 211 widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 211 WIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred EEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 4321 22346788999887 555555
|
|
| >PRK14131 N-acetylneuraminic acid mutarotase; Provisional | Back alignment and domain information |
|---|
Probab=90.21 E-value=31 Score=40.47 Aligned_cols=53 Identities=11% Similarity=0.070 Sum_probs=25.4
Q ss_pred CCCEEEEEEcC-----------CeEEEEEcCCCeeEEEEeCCCCCe--EEEEEcCCCCEEEEEECC
Q 001462 69 AEVLVLAGAST-----------GVIKLWDLEESKMVRTLTGHKSNC--TAVEFHPFGEFFASGCMD 121 (1074)
Q Consensus 69 dg~~LatGs~D-----------G~I~VWDl~tgk~i~tl~~h~~~V--tsLafSPdg~~LaSgS~D 121 (1074)
++.+.+.|+.. ..+..||..+.+-...-....... .+....-+++.++.|+.+
T Consensus 84 ~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~ 149 (376)
T PRK14131 84 DGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTRSPVGLAGHVAVSLHNGKAYITGGVN 149 (376)
T ss_pred CCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCCCCCCcccceEEEEeeCCEEEEECCCC
Confidence 46666666653 247778877654222111011111 122221467777777654
|
|
| >TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein | Back alignment and domain information |
|---|
Probab=90.19 E-value=39 Score=38.58 Aligned_cols=106 Identities=13% Similarity=0.150 Sum_probs=53.5
Q ss_pred CCCEEEEEECC-----CeEEEEECCCCeE---EEEEeCCCCCe--EEEEEcCCCCEEEEEEC-----CCeEEEEECCCCc
Q 001462 111 FGEFFASGCMD-----TNLKIWDIRKKGC---IHTYKGHTRGI--NTIRFTPDGRWVVSGGF-----DNVVKVWDLTAGK 175 (1074)
Q Consensus 111 dg~~LaSgS~D-----GsI~IWDi~tg~~---v~~l~~h~~~V--tsLafSPdG~~LaSgs~-----DGsI~VWDl~tgk 175 (1074)
++..++.|+.+ ..+..||+.+... ...+.....+. .+++.. ++++++.|+. ...+..||+.+.+
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~-~~~iYv~GG~~~~~~~~~v~~yd~~~~~ 150 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYK-DGTLYVGGGNRNGKPSNKSYLFNLETQE 150 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEE-CCEEEEEeCcCCCccCceEEEEcCCCCC
Confidence 46666777654 3577778766543 12221111111 122222 4666666664 2368888987654
Q ss_pred eEE--EeeecCCCeEEEEEcCCCcEEEEEeCCC----eEEEEECCCCcE
Q 001462 176 LLH--DFKFHEGHIRSIDFHPLEFLLATGSADR----TVKFWDLETFEL 218 (1074)
Q Consensus 176 ~v~--~~~~h~g~ItsLafSPdg~lLaTGS~DG----tI~IWDl~tg~~ 218 (1074)
-.. .+.. .......+..-++++.+.|+.++ .+.+||+.+.+.
T Consensus 151 W~~~~~~p~-~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W 198 (323)
T TIGR03548 151 WFELPDFPG-EPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQW 198 (323)
T ss_pred eeECCCCCC-CCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCee
Confidence 322 1211 11112222233567777787654 356888886543
|
Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat. |
| >PRK14131 N-acetylneuraminic acid mutarotase; Provisional | Back alignment and domain information |
|---|
Probab=90.09 E-value=38 Score=39.73 Aligned_cols=53 Identities=13% Similarity=0.285 Sum_probs=25.9
Q ss_pred CCCEEEEEECC-----------CeEEEEECCCCeEEEEEeCCCCCe--EEEEEcCCCCEEEEEECC
Q 001462 111 FGEFFASGCMD-----------TNLKIWDIRKKGCIHTYKGHTRGI--NTIRFTPDGRWVVSGGFD 163 (1074)
Q Consensus 111 dg~~LaSgS~D-----------GsI~IWDi~tg~~v~~l~~h~~~V--tsLafSPdG~~LaSgs~D 163 (1074)
++..++.|+.+ ..+..||..+..-...-....... .+.+..-++++++.|+.+
T Consensus 84 ~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~ 149 (376)
T PRK14131 84 DGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTRSPVGLAGHVAVSLHNGKAYITGGVN 149 (376)
T ss_pred CCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCCCCCCcccceEEEEeeCCEEEEECCCC
Confidence 46667777643 247788877654322111011111 112221467777777754
|
|
| >COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=90.05 E-value=3.7 Score=49.27 Aligned_cols=139 Identities=16% Similarity=0.204 Sum_probs=89.5
Q ss_pred EEEEEECCCeEEEEECCCCceEEEeeCCCCCeEEEEEcCCCC-------EEEEEEcCCeEEEEEcCC-CeeEEEEeCCCC
Q 001462 30 FLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEV-------LVLAGASTGVIKLWDLEE-SKMVRTLTGHKS 101 (1074)
Q Consensus 30 lLaTGs~DGtV~IWDl~t~k~l~sl~~hs~~ItsLafSpdg~-------~LatGs~DG~I~VWDl~t-gk~i~tl~~h~~ 101 (1074)
++..|+....++-.|+..|+.+..+..|..- -+.|.|..+ .-++|-.+..|.-.|.+- |..+.... ...
T Consensus 482 i~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~e-sKd 558 (776)
T COG5167 482 IYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVE-SKD 558 (776)
T ss_pred EEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeee-ehh
Confidence 3445566667888888999999888877655 567777432 234455556666666542 32222211 122
Q ss_pred CeEEEEEcC----CCCEEEEEECCCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC
Q 001462 102 NCTAVEFHP----FGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLT 172 (1074)
Q Consensus 102 ~VtsLafSP----dg~~LaSgS~DGsI~IWDi~tg~~v~~l~~h~~~VtsLafSPdG~~LaSgs~DGsI~VWDl~ 172 (1074)
.++--.|+. ...|+++|+..|.|++||--.......+.+....|..+..+.+|+++++.+. ..|.+.|+.
T Consensus 559 Y~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk-~yllL~d~~ 632 (776)
T COG5167 559 YKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCK-NYLLLTDVP 632 (776)
T ss_pred ccccccccccccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeec-ceEEEEecc
Confidence 222223332 3458999999999999995444444455667788999999999999887764 567777764
|
|
| >PLN02193 nitrile-specifier protein | Back alignment and domain information |
|---|
Probab=89.91 E-value=40 Score=40.96 Aligned_cols=105 Identities=11% Similarity=0.129 Sum_probs=53.6
Q ss_pred CCCEEEEEECC-----CeEEEEECCCCeEEEEEeC---C-CCCeEEEEEcCCCCEEEEEECCC-----eEEEEECCCCce
Q 001462 111 FGEFFASGCMD-----TNLKIWDIRKKGCIHTYKG---H-TRGINTIRFTPDGRWVVSGGFDN-----VVKVWDLTAGKL 176 (1074)
Q Consensus 111 dg~~LaSgS~D-----GsI~IWDi~tg~~v~~l~~---h-~~~VtsLafSPdG~~LaSgs~DG-----sI~VWDl~tgk~ 176 (1074)
++..++.|+.+ ..+.+||+.+..-...-.. . ...-.+++. -++++++.|+.++ .+..||+.+.+-
T Consensus 228 ~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~-~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W 306 (470)
T PLN02193 228 GSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAA-DEENVYVFGGVSATARLKTLDSYNIVDKKW 306 (470)
T ss_pred CCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEE-ECCEEEEECCCCCCCCcceEEEEECCCCEE
Confidence 45666666654 3588899877543221110 0 111122222 2456667776543 467788776543
Q ss_pred EEEee-----ecCCCeEEEEEcCCCcEEEEEeCC----CeEEEEECCCCcE
Q 001462 177 LHDFK-----FHEGHIRSIDFHPLEFLLATGSAD----RTVKFWDLETFEL 218 (1074)
Q Consensus 177 v~~~~-----~h~g~ItsLafSPdg~lLaTGS~D----GtI~IWDl~tg~~ 218 (1074)
...-. ..... ..++. -++++++.++.+ ..+.+||+.+.+.
T Consensus 307 ~~~~~~~~~~~~R~~-~~~~~-~~gkiyviGG~~g~~~~dv~~yD~~t~~W 355 (470)
T PLN02193 307 FHCSTPGDSFSIRGG-AGLEV-VQGKVWVVYGFNGCEVDDVHYYDPVQDKW 355 (470)
T ss_pred EeCCCCCCCCCCCCC-cEEEE-ECCcEEEEECCCCCccCceEEEECCCCEE
Confidence 21110 00111 12222 256777777655 4589999987654
|
|
| >COG5276 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=89.80 E-value=42 Score=38.39 Aligned_cols=151 Identities=11% Similarity=0.095 Sum_probs=95.0
Q ss_pred CCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeeEEEEeC--CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCe--
Q 001462 58 SSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTG--HKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKG-- 133 (1074)
Q Consensus 58 s~~ItsLafSpdg~~LatGs~DG~I~VWDl~tgk~i~tl~~--h~~~VtsLafSPdg~~LaSgS~DGsI~IWDi~tg~-- 133 (1074)
..-+..+.++ +++.+.+..+.-++|+|+.+-.....+.. ..+.-.++.. .|++..++..|.-+.++|+.+..
T Consensus 86 ~~l~~Dv~vs--e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~v--sGn~aYVadlddgfLivdvsdpssP 161 (370)
T COG5276 86 RDLFADVRVS--EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYV--SGNYAYVADLDDGFLIVDVSDPSSP 161 (370)
T ss_pred hhhhheeEec--ccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEe--cCCEEEEeeccCcEEEEECCCCCCc
Confidence 3445566676 44555555666699999976543333221 1233344444 49999999866668888886543
Q ss_pred -EEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCce---EEEeeecCCCeEEEEEcCCCcEEEEEeCCCeEE
Q 001462 134 -CIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKL---LHDFKFHEGHIRSIDFHPLEFLLATGSADRTVK 209 (1074)
Q Consensus 134 -~v~~l~~h~~~VtsLafSPdG~~LaSgs~DGsI~VWDl~tgk~---v~~~~~h~g~ItsLafSPdg~lLaTGS~DGtI~ 209 (1074)
....+.......+.++.+ |++-..+..|+-+.+.|+..... +.... ....+.++..+++..+++... .-+.
T Consensus 162 ~lagrya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n-~g~g~~sv~vsdnr~y~vvy~--egvl 236 (370)
T COG5276 162 QLAGRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYN-TGPGTYSVSVSDNRAYLVVYD--EGVL 236 (370)
T ss_pred eeeeeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEEEe-cCCceEEEEecCCeeEEEEcc--cceE
Confidence 334444444444677776 77778888899999999976532 22222 233678888887776666553 4467
Q ss_pred EEECCCCc
Q 001462 210 FWDLETFE 217 (1074)
Q Consensus 210 IWDl~tg~ 217 (1074)
+-|.....
T Consensus 237 ivd~s~~s 244 (370)
T COG5276 237 IVDVSGPS 244 (370)
T ss_pred EEecCCCC
Confidence 77777655
|
|
| >PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast) | Back alignment and domain information |
|---|
Probab=89.71 E-value=68 Score=40.65 Aligned_cols=234 Identities=15% Similarity=0.146 Sum_probs=119.5
Q ss_pred EEEcCCCCEEEEEEcCCeEEEEEcC-CCeeEEEEe-CCCCCeEEEEEcCC---CCEEEEEECC-CeEEEEECCCC-----
Q 001462 64 VAFDSAEVLVLAGASTGVIKLWDLE-ESKMVRTLT-GHKSNCTAVEFHPF---GEFFASGCMD-TNLKIWDIRKK----- 132 (1074)
Q Consensus 64 LafSpdg~~LatGs~DG~I~VWDl~-tgk~i~tl~-~h~~~VtsLafSPd---g~~LaSgS~D-GsI~IWDi~tg----- 132 (1074)
..++|+.+.+-.|=....|.-|=+. +.+.++.+. .....|.||..... .+.+++|-.+ +.-++..+..+
T Consensus 33 ~~~s~~sn~IdiGIS~S~ISsYIi~PTPKLiwsypi~pt~iV~~~dV~~~~~~~~~~~~glt~rKk~~ll~i~~~~~~~~ 112 (670)
T PF10395_consen 33 DDFSPDSNQIDIGISGSAISSYIIKPTPKLIWSYPISPTTIVECCDVLEKSDGKKLYCVGLTERKKFKLLLIERKVGSTE 112 (670)
T ss_pred cccCCCCceEEEEeccchhhheecCCCcceeEeeccCcCceEEEEEeEecCCCcEEEEEEEeeCCeeEEEEEEccCcccc
Confidence 3566777766666554455544433 445555554 23445677766433 2345555333 32333322222
Q ss_pred ------e--EEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEE--Eeee-cCCCeEEEEEcC------C
Q 001462 133 ------G--CIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLH--DFKF-HEGHIRSIDFHP------L 195 (1074)
Q Consensus 133 ------~--~v~~l~~h~~~VtsLafSPdG~~LaSgs~DGsI~VWDl~tgk~v~--~~~~-h~g~ItsLafSP------d 195 (1074)
. ....++ -.+.|..+.|..+++.+++...+|.|.+||...+.... .+.. +...+.--+|-+ .
T Consensus 113 ~~~~~~e~~~~~~~k-l~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~ 191 (670)
T PF10395_consen 113 DGTVNSETTNEFELK-LDDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENG 191 (670)
T ss_pred ccccCccccceEEEE-cccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccC
Confidence 1 122333 35678999999999999999999999999993332211 2221 111111112222 1
Q ss_pred CcEEEEEeC-C---CeEEEEECC-CCcEEEeeC---CCCCCeEEEEEecCCCEEEEEECCcEEEEEecCCeeeeccccCC
Q 001462 196 EFLLATGSA-D---RTVKFWDLE-TFELIGSTR---PEVTGVHAITFHPDGRTLFSGFDDNLKVYSWEPVICHDSVDMGW 267 (1074)
Q Consensus 196 g~lLaTGS~-D---GtI~IWDl~-tg~~i~t~~---~~~~~ItsIafSPDG~~LasGsd~~I~Vwd~~s~~~~~~l~~~~ 267 (1074)
..++++.+. + -..+++.+. ....+..+. .+........|+-+...|+.-.++.|.+|++........+....
T Consensus 192 ~~~ll~v~~~~~~k~~ykL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l~~~~i~~ysip~f~~~~tI~l~~ 271 (670)
T PF10395_consen 192 KDLLLTVSQLSNSKLSYKLISLSNESSSIFELSSTILENFGLEDSKFCYQFGKLYQLSKKTISSYSIPNFQIQKTISLPS 271 (670)
T ss_pred CceEEEEEEcCCCcEEEEEEEeccCCcceEEeehheeccCCcccceEEEeCCEEEEEeCCEEEEEEcCCceEEEEEEech
Confidence 234444443 2 246777771 122222221 22233334444443333444477889999997776655544331
Q ss_pred ------ceeeEEEecCCCEEEEEECCCeEEEEEcCCCc
Q 001462 268 ------STLGDLCINDGKLLGCSFYRNSVGIWVADVSH 299 (1074)
Q Consensus 268 ------s~~~~l~spDGklLAsgs~DGsV~IWDld~~~ 299 (1074)
.....+..+..+.+..+ .++.|+++|+....
T Consensus 272 ii~~~~~~~vSl~~~s~nRvLLs-~~nkIyLld~~~~s 308 (670)
T PF10395_consen 272 IIDKESDDLVSLKPPSPNRVLLS-VNNKIYLLDLKFES 308 (670)
T ss_pred hhccccccceEeecCCCCeEEEE-cCCEEEEEeehhhh
Confidence 11223333444444443 57889999975443
|
It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex []. |
| >COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=89.41 E-value=70 Score=40.39 Aligned_cols=276 Identities=12% Similarity=0.128 Sum_probs=132.1
Q ss_pred EecCCCCEEEEEEecCCCcEEEEEECCC--eEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEEEE------cCCe-
Q 001462 11 FVAHSANVNCISIGKKACRFLITGGDDQ--KVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGA------STGV- 81 (1074)
Q Consensus 11 L~gHs~~Vt~IafSPdg~~lLaTGs~DG--tV~IWDl~t~k~l~sl~~hs~~ItsLafSpdg~~LatGs------~DG~- 81 (1074)
+..+...+..+.|+|+| .+++..+.++ ...+|-+.... .+..+...+....|++++..++... .++.
T Consensus 55 ~~~~~~~~~~~~~spdg-~~~~~~~~~~~~~~~l~l~~~~g---~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~~~~~ 130 (620)
T COG1506 55 LLTFGGGVSELRWSPDG-SVLAFVSTDGGRVAQLYLVDVGG---LITKTAFGVSDARWSPDGDRIAFLTAEGASKRDGGD 130 (620)
T ss_pred ccccCCcccccccCCCC-CEEEEEeccCCCcceEEEEecCC---ceeeeecccccceeCCCCCeEEEEecccccccCCce
Confidence 45677888999999999 5555554322 23344332221 3444566778889999988877721 1232
Q ss_pred ------EEEEEcCCC-ee-----------EEEEeCCCCCeEEEEEcCCCCEEEEEECCCe-------EEEEECCCCeEEE
Q 001462 82 ------IKLWDLEES-KM-----------VRTLTGHKSNCTAVEFHPFGEFFASGCMDTN-------LKIWDIRKKGCIH 136 (1074)
Q Consensus 82 ------I~VWDl~tg-k~-----------i~tl~~h~~~VtsLafSPdg~~LaSgS~DGs-------I~IWDi~tg~~v~ 136 (1074)
+.+|....+ .. ..........+....+++++..++....+.. ..+|...++. +.
T Consensus 131 ~~~~~~~~~~~~~~g~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 209 (620)
T COG1506 131 HLFVDRLPVWFDGRGGERSDLYVVDIESKLIKLGLGNLDVVSFATDGDGRLVASIRLDDDADPWVTNLYVLIEGNGE-LE 209 (620)
T ss_pred eeeecccceeecCCCCcccceEEEccCcccccccCCCCceeeeeeCCCCceeEEeeeccccCCceEeeEEEecCCCc-eE
Confidence 334433333 11 1112223455667777776776666544332 3333332333 34
Q ss_pred EEeCCCCCeEEEEEcCCCCEEEEEEC-CC-------eEEEEECCCCceEEEeeecC--CCeEEEEE-cCCCcEEEEEeC-
Q 001462 137 TYKGHTRGINTIRFTPDGRWVVSGGF-DN-------VVKVWDLTAGKLLHDFKFHE--GHIRSIDF-HPLEFLLATGSA- 204 (1074)
Q Consensus 137 ~l~~h~~~VtsLafSPdG~~LaSgs~-DG-------sI~VWDl~tgk~v~~~~~h~--g~ItsLaf-SPdg~lLaTGS~- 204 (1074)
.+......+..+.|.++|+.++..+. .. .+.+++...++....+.... .....+.+ -+++..++++..
T Consensus 210 ~~~~~~~~~~~~~~~~~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (620)
T COG1506 210 SLTPGEGSISKLAFDADGKSIALLGTESDRGLAEGDFILLLDGELGEVDGDLSSGDDTRGAWAVEGGLDGDGLLFIATDG 289 (620)
T ss_pred EEcCCCceeeeeeeCCCCCeeEEeccCCccCccccceEEEEeccccccceeeccCCcccCcHHhccccCCCcEEEEEecC
Confidence 44445556888899999985554332 22 24444422222222111100 00001111 122333434333
Q ss_pred CCeEEEEECCCCc-EEEeeCCCCCCeEEEEEecCCCEEEEEECC-----cEEEEEecCCeeeeccccCCceeeEEEecCC
Q 001462 205 DRTVKFWDLETFE-LIGSTRPEVTGVHAITFHPDGRTLFSGFDD-----NLKVYSWEPVICHDSVDMGWSTLGDLCINDG 278 (1074)
Q Consensus 205 DGtI~IWDl~tg~-~i~t~~~~~~~ItsIafSPDG~~LasGsd~-----~I~Vwd~~s~~~~~~l~~~~s~~~~l~spDG 278 (1074)
.|...++...... .........+.+..+.+ ++..++....+ .+.+|+. .....................-
T Consensus 290 ~g~~~l~~~~~~~~~~~~~~~~~~~v~~f~~--~~~~~~~~~s~~~~p~~i~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 365 (620)
T COG1506 290 GGSSPLFRVDDLGGGVEGLSGDDGGVPGFDV--DGRKLALAYSSPTEPPEIYLYDR--GEEAKLTSSNNSGLKKVKLAEP 365 (620)
T ss_pred CCceEEEEEeccCCceeeecCCCceEEEEee--CCCEEEEEecCCCCccceEEEcC--CCceEEeecccccccccccCCc
Confidence 5666666655322 22223333355555555 77777664222 2445443 1111111111111111222344
Q ss_pred CEEEEEECCC-eEEEEEc
Q 001462 279 KLLGCSFYRN-SVGIWVA 295 (1074)
Q Consensus 279 klLAsgs~DG-sV~IWDl 295 (1074)
+.+-..+.|| .|.-|-+
T Consensus 366 e~~~~~~~dG~~i~~~l~ 383 (620)
T COG1506 366 EPVTYKSNDGETIHGWLY 383 (620)
T ss_pred eEEEEEcCCCCEEEEEEe
Confidence 5566666677 7777765
|
|
| >COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=89.39 E-value=4 Score=48.99 Aligned_cols=136 Identities=13% Similarity=0.129 Sum_probs=89.7
Q ss_pred EEECCCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCC-------EEEEEECCCeEEEEECCC-CceEEEeeecCCCeE
Q 001462 117 SGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGR-------WVVSGGFDNVVKVWDLTA-GKLLHDFKFHEGHIR 188 (1074)
Q Consensus 117 SgS~DGsI~IWDi~tg~~v~~l~~h~~~VtsLafSPdG~-------~LaSgs~DGsI~VWDl~t-gk~v~~~~~h~g~It 188 (1074)
.|+....++-.|+..|+.+..+..|..- -+.|.|+.+ .-++|-.+..|.-.|.+- |..+.... .....+
T Consensus 485 dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~e-sKdY~t 561 (776)
T COG5167 485 DGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVE-SKDYKT 561 (776)
T ss_pred cCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeee-ehhccc
Confidence 3444567888899999999999877663 577877532 123455566666666653 32222221 111222
Q ss_pred EEEEcC----CCcEEEEEeCCCeEEEEECCCCcEEEeeCCCCCCeEEEEEecCCCEEEEEECCcEEEEEec
Q 001462 189 SIDFHP----LEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGFDDNLKVYSWE 255 (1074)
Q Consensus 189 sLafSP----dg~lLaTGS~DGtI~IWDl~tg~~i~t~~~~~~~ItsIafSPDG~~LasGsd~~I~Vwd~~ 255 (1074)
.-.|+. ...++++++..|.|++||--.......+.+....|..|..+.+|+++++.+...+.+.|+.
T Consensus 562 Kn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~yllL~d~~ 632 (776)
T COG5167 562 KNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKNYLLLTDVP 632 (776)
T ss_pred cccccccccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecceEEEEecc
Confidence 222322 3458999999999999996544333445556677899999999999999999988888764
|
|
| >KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.24 E-value=9.3 Score=50.63 Aligned_cols=231 Identities=17% Similarity=0.166 Sum_probs=103.8
Q ss_pred CCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeeEEEEeCCCC-CeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEE
Q 001462 57 LSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKS-NCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCI 135 (1074)
Q Consensus 57 hs~~ItsLafSpdg~~LatGs~DG~I~VWDl~tgk~i~tl~~h~~-~VtsLafSPdg~~LaSgS~DGsI~IWDi~tg~~v 135 (1074)
.......++|++...+++.|...|.|.++-...-+.......... .+..+.|............+..+.+|.......+
T Consensus 34 ~~~~~~~~afD~~q~llai~t~tg~i~~yg~~~ve~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~ 113 (993)
T KOG1983|consen 34 FPSTPSALAFDPTQGLLAIGTRTGAIKIYGQPGVEFVGLHPKQNQINVTRIELLVGISRNLVLSDDDSLHLWSIKIKTGV 113 (993)
T ss_pred CCCCCcceeeccccceEEEEEecccEEEecccceEEEeccccccchhhhheeeeecccccceeecccceeeeccccccee
Confidence 334567799999999999999999999997544333222221111 1111222111111222233444555554322211
Q ss_pred EEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEee--ecCCCe-EEEEEcCCCcEEEEEeCCCeEEEEE
Q 001462 136 HTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFK--FHEGHI-RSIDFHPLEFLLATGSADRTVKFWD 212 (1074)
Q Consensus 136 ~~l~~h~~~VtsLafSPdG~~LaSgs~DGsI~VWDl~tgk~v~~~~--~h~g~I-tsLafSPdg~lLaTGS~DGtI~IWD 212 (1074)
. ....+.+....+--.+ +.| ..+.+++||..-... ..+. .-.... .-..+.+...-+..--.+-.-.+|.
T Consensus 114 ~----~~~~~~~~~~~~~~~~-~~g-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 186 (993)
T KOG1983|consen 114 F----LKQEITSFVTDPPPDW-LIG-ENGLVKVSDVLRHQL-SDLKYAGTESSNFVPYESLSPTLSIEGLVIDLDTVLIS 186 (993)
T ss_pred e----cCCcceeccCCCCcch-hcc-cCceeeEeeechhhh-ccceeccccccccceeeeeccceeeeccccccccceee
Confidence 1 1222333333322234 445 788888888643221 1111 000000 0000000000000000000011111
Q ss_pred CCCCcEEEeeCCCCCCeEEEEEecCCCEEEEEECCcEEEEEecCCeeeeccccCCceeeEEEecCCCEEEEEECCCeEEE
Q 001462 213 LETFELIGSTRPEVTGVHAITFHPDGRTLFSGFDDNLKVYSWEPVICHDSVDMGWSTLGDLCINDGKLLGCSFYRNSVGI 292 (1074)
Q Consensus 213 l~tg~~i~t~~~~~~~ItsIafSPDG~~LasGsd~~I~Vwd~~s~~~~~~l~~~~s~~~~l~spDGklLAsgs~DGsV~I 292 (1074)
+.--. ..+..+...+.+..+......+..+..+.+-+|+.........+. ........++..++++..||.+.+
T Consensus 187 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~v~~h~Dgs~~f 260 (993)
T KOG1983|consen 187 LPDAY--LGLSLIEYESLQVLYYSPTKILIGFNRGLVVIKDRASKYVQSAYL----PNGQLESRDGSHFVSYHTDGSYAF 260 (993)
T ss_pred ccccc--ccccccccccceeeeecCCCcceeeeeeeeeehhcccccchhhcc----cccccCccCCceEEEEEecCCEEe
Confidence 11000 112222334445555445555555555555555554433322222 111222678999999999999999
Q ss_pred EEcCCCce
Q 001462 293 WVADVSHV 300 (1074)
Q Consensus 293 WDld~~~l 300 (1074)
||++.++.
T Consensus 261 Wd~s~g~~ 268 (993)
T KOG1983|consen 261 WDVSSGKL 268 (993)
T ss_pred eecCCCce
Confidence 99988655
|
|
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=89.23 E-value=0.9 Score=37.65 Aligned_cols=34 Identities=18% Similarity=0.293 Sum_probs=30.0
Q ss_pred CCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCCee
Q 001462 58 SSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKM 92 (1074)
Q Consensus 58 s~~ItsLafSpdg~~LatGs~DG~I~VWDl~tgk~ 92 (1074)
...|.+++|+|...+||.|..+|.|.++.+ +++.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 457999999999999999999999999998 5543
|
|
| >PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal | Back alignment and domain information |
|---|
Probab=88.93 E-value=9.7 Score=38.62 Aligned_cols=114 Identities=15% Similarity=0.207 Sum_probs=73.8
Q ss_pred EEEEcCCCCEEEEEEcCCeEEEEEcCCC--------eeEEEEeCCCCCeEEEEEcC-----CCCEEEEEECCCeEEEEEC
Q 001462 63 SVAFDSAEVLVLAGASTGVIKLWDLEES--------KMVRTLTGHKSNCTAVEFHP-----FGEFFASGCMDTNLKIWDI 129 (1074)
Q Consensus 63 sLafSpdg~~LatGs~DG~I~VWDl~tg--------k~i~tl~~h~~~VtsLafSP-----dg~~LaSgS~DGsI~IWDi 129 (1074)
.-.|......|++++..|.|.|++.... ..+..+. ....|++++--+ ..+.|+.|+ ..+|..||+
T Consensus 3 iGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt-~t~llaYDV 80 (136)
T PF14781_consen 3 IGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDV 80 (136)
T ss_pred EEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEc
Confidence 3456666678889999999999987633 2344444 566777776543 245677775 567999999
Q ss_pred CCCeEEEEEeCCCCCeEEEEEcC----CCCEEEEEECCCeEEEEECCCCceEEEe
Q 001462 130 RKKGCIHTYKGHTRGINTIRFTP----DGRWVVSGGFDNVVKVWDLTAGKLLHDF 180 (1074)
Q Consensus 130 ~tg~~v~~l~~h~~~VtsLafSP----dG~~LaSgs~DGsI~VWDl~tgk~v~~~ 180 (1074)
.....+..-. -.+.|.++.+-. +..++++ +.+..|.-||....+..+..
T Consensus 81 ~~N~d~Fyke-~~DGvn~i~~g~~~~~~~~l~iv-GGncsi~Gfd~~G~e~fWtV 133 (136)
T PF14781_consen 81 ENNSDLFYKE-VPDGVNAIVIGKLGDIPSPLVIV-GGNCSIQGFDYEGNEIFWTV 133 (136)
T ss_pred ccCchhhhhh-CccceeEEEEEecCCCCCcEEEE-CceEEEEEeCCCCcEEEEEe
Confidence 8766544333 446788887743 2334444 44778888887655555544
|
|
| >PF13449 Phytase-like: Esterase-like activity of phytase | Back alignment and domain information |
|---|
Probab=88.45 E-value=54 Score=37.86 Aligned_cols=143 Identities=17% Similarity=0.274 Sum_probs=85.9
Q ss_pred CCeEEEEEcCCCCEEEEEEcCCe------EEEEEcCC--C--eeE-----EEEeCCCC--------CeEEEEEcCCCCEE
Q 001462 59 SPVDSVAFDSAEVLVLAGASTGV------IKLWDLEE--S--KMV-----RTLTGHKS--------NCTAVEFHPFGEFF 115 (1074)
Q Consensus 59 ~~ItsLafSpdg~~LatGs~DG~------I~VWDl~t--g--k~i-----~tl~~h~~--------~VtsLafSPdg~~L 115 (1074)
+.+..+.|.+++..+++.+.+|. +..+++.. + ..+ ..+....+ ...+|++.++|.++
T Consensus 20 GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~~ 99 (326)
T PF13449_consen 20 GGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSFW 99 (326)
T ss_pred CcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCEE
Confidence 45677888865656666677777 66665543 1 111 11111111 34578887788877
Q ss_pred EEEECC------CeEEEEECCCCeEEEEEe---------------CCCCCeEEEEEcCCCCEEEEEECC-----C-----
Q 001462 116 ASGCMD------TNLKIWDIRKKGCIHTYK---------------GHTRGINTIRFTPDGRWVVSGGFD-----N----- 164 (1074)
Q Consensus 116 aSgS~D------GsI~IWDi~tg~~v~~l~---------------~h~~~VtsLafSPdG~~LaSgs~D-----G----- 164 (1074)
++.-.+ ..|+.++.. |.....+. ..+..+-.|+++|+|+.|+++.+. +
T Consensus 100 is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~~ 178 (326)
T PF13449_consen 100 ISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRANP 178 (326)
T ss_pred EEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCccccc
Confidence 776666 778888865 55543331 134568899999999976665432 2
Q ss_pred ------eEEEEECCC-CceEEEe----ee-----cCCCeEEEEEcCCCcEEEEE
Q 001462 165 ------VVKVWDLTA-GKLLHDF----KF-----HEGHIRSIDFHPLEFLLATG 202 (1074)
Q Consensus 165 ------sI~VWDl~t-gk~v~~~----~~-----h~g~ItsLafSPdg~lLaTG 202 (1074)
.|..||..+ +.....+ .. ....+..+.+-+++.+|+.=
T Consensus 179 ~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLE 232 (326)
T PF13449_consen 179 DNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLE 232 (326)
T ss_pred ccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEE
Confidence 244556554 3232222 21 24568888898988876653
|
|
| >COG4257 Vgb Streptogramin lyase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=88.25 E-value=52 Score=37.40 Aligned_cols=224 Identities=14% Similarity=0.100 Sum_probs=134.2
Q ss_pred CCEEEEEEecCCCcEEEEEECCCeEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeeEE-
Q 001462 16 ANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVR- 94 (1074)
Q Consensus 16 ~~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~k~l~sl~~hs~~ItsLafSpdg~~LatGs~DG~I~VWDl~tgk~i~- 94 (1074)
+.-..++-.||| ..-+++...|.|--.|-.+++....-.+.......+..-|||..-++-+.. -|.-+|-++.+...
T Consensus 62 ~ap~dvapapdG-~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~f 139 (353)
T COG4257 62 SAPFDVAPAPDG-AVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTRF 139 (353)
T ss_pred CCccccccCCCC-ceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEEe
Confidence 345667777777 556666666666666777777665555555666778888888766664433 45555554443221
Q ss_pred E--EeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeC-CCCCeEEEEEcCCCCEEEEEECCCeEEEEEC
Q 001462 95 T--LTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKG-HTRGINTIRFTPDGRWVVSGGFDNVVKVWDL 171 (1074)
Q Consensus 95 t--l~~h~~~VtsLafSPdg~~LaSgS~DGsI~IWDi~tg~~v~~l~~-h~~~VtsLafSPdG~~LaSgs~DGsI~VWDl 171 (1074)
. ............|.+.|+.-+++. .|..--.|... ..+..+.. .....+.||..|+|...++.-.+..|...|.
T Consensus 140 ~lp~~~a~~nlet~vfD~~G~lWFt~q-~G~yGrLdPa~-~~i~vfpaPqG~gpyGi~atpdGsvwyaslagnaiaridp 217 (353)
T COG4257 140 PLPLEHADANLETAVFDPWGNLWFTGQ-IGAYGRLDPAR-NVISVFPAPQGGGPYGICATPDGSVWYASLAGNAIARIDP 217 (353)
T ss_pred ecccccCCCcccceeeCCCccEEEeec-cccceecCccc-CceeeeccCCCCCCcceEECCCCcEEEEeccccceEEccc
Confidence 1 122345677889999999888874 33222222211 22333332 2335678899999997777667778888887
Q ss_pred CCCceEEEe--eecCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCCcEEE-eeCCCCCCeEEEEEecCCCEEEE
Q 001462 172 TAGKLLHDF--KFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIG-STRPEVTGVHAITFHPDGRTLFS 243 (1074)
Q Consensus 172 ~tgk~v~~~--~~h~g~ItsLafSPdg~lLaTGS~DGtI~IWDl~tg~~i~-t~~~~~~~ItsIafSPDG~~Las 243 (1074)
.++.....- .........+--+|.|..-++-...+.+..||......+. .+......-.++.....|+...+
T Consensus 218 ~~~~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~sW~eypLPgs~arpys~rVD~~grVW~s 292 (353)
T COG4257 218 FAGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTSWIEYPLPGSKARPYSMRVDRHGRVWLS 292 (353)
T ss_pred ccCCcceecCCCcccccccccccCccCcEEEeccCCceeeEeCcccccceeeeCCCCCCCcceeeeccCCcEEee
Confidence 776322111 1212234556667788888887778889888877554322 22223333456666666665554
|
|
| >PF13449 Phytase-like: Esterase-like activity of phytase | Back alignment and domain information |
|---|
Probab=87.99 E-value=36 Score=39.28 Aligned_cols=155 Identities=18% Similarity=0.253 Sum_probs=92.4
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCe------EEEEECCC--C--eEE-----EEEeCCCC--------CeEEEEEcCCCCE
Q 001462 100 KSNCTAVEFHPFGEFFASGCMDTN------LKIWDIRK--K--GCI-----HTYKGHTR--------GINTIRFTPDGRW 156 (1074)
Q Consensus 100 ~~~VtsLafSPdg~~LaSgS~DGs------I~IWDi~t--g--~~v-----~~l~~h~~--------~VtsLafSPdG~~ 156 (1074)
-+.+..+.+.+++..+++.+.+|. ++.+++.. + ..+ ..+....+ ..-+|++.++|.+
T Consensus 19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~ 98 (326)
T PF13449_consen 19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSF 98 (326)
T ss_pred cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCE
Confidence 455778888866656666677777 66666543 1 111 11111111 2447888778887
Q ss_pred EEEEECC------CeEEEEECCCCceEEEee---------------ecCCCeEEEEEcCCCcEEEEEeC-----CC----
Q 001462 157 VVSGGFD------NVVKVWDLTAGKLLHDFK---------------FHEGHIRSIDFHPLEFLLATGSA-----DR---- 206 (1074)
Q Consensus 157 LaSgs~D------GsI~VWDl~tgk~v~~~~---------------~h~g~ItsLafSPdg~lLaTGS~-----DG---- 206 (1074)
+++.-.+ ..|+.++.. |+....+. ..+...-+|+++|+|..|+++.. |+
T Consensus 99 ~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~ 177 (326)
T PF13449_consen 99 WISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRAN 177 (326)
T ss_pred EEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCcccc
Confidence 7776666 788888876 66544431 12345789999999997666643 22
Q ss_pred -------eEEEEECCC-CcE----EEeeCC-----CCCCeEEEEEecCCCEEEEEE------CCcEEEEEec
Q 001462 207 -------TVKFWDLET-FEL----IGSTRP-----EVTGVHAITFHPDGRTLFSGF------DDNLKVYSWE 255 (1074)
Q Consensus 207 -------tI~IWDl~t-g~~----i~t~~~-----~~~~ItsIafSPDG~~LasGs------d~~I~Vwd~~ 255 (1074)
.|..||..+ +.. ...+.. ....+..+.+.+++++|+.=- ...++||.++
T Consensus 178 ~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~~~ri~~v~ 249 (326)
T PF13449_consen 178 PDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGNYKRIYRVD 249 (326)
T ss_pred cccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccceEEEEEEE
Confidence 233445544 222 222222 346788999999999887632 2235555554
|
|
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=87.98 E-value=1.3 Score=36.78 Aligned_cols=35 Identities=17% Similarity=0.260 Sum_probs=30.3
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceE
Q 001462 142 TRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLL 177 (1074)
Q Consensus 142 ~~~VtsLafSPdG~~LaSgs~DGsI~VWDl~tgk~v 177 (1074)
...|.+++|+|...+||.|..+|.|.+|.+ +++.+
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qri 45 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQRI 45 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcCc
Confidence 456999999999999999999999999998 55543
|
|
| >COG5290 IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=87.88 E-value=16 Score=46.06 Aligned_cols=108 Identities=15% Similarity=0.287 Sum_probs=63.4
Q ss_pred eEEEEEcCCCCEEEEEECCC-----eEEEEECCCCceEEEe---eecCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCC
Q 001462 145 INTIRFTPDGRWVVSGGFDN-----VVKVWDLTAGKLLHDF---KFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETF 216 (1074)
Q Consensus 145 VtsLafSPdG~~LaSgs~DG-----sI~VWDl~tgk~v~~~---~~h~g~ItsLafSPdg~lLaTGS~DGtI~IWDl~tg 216 (1074)
-..+.|-|.|..+++-+.|| .|.++.- +|-.-..+ .+.+..+..++|+-....++.+. ...|.+|-..+.
T Consensus 249 e~~LSWkpqgS~~ati~td~~~~S~~ViFfEr-NGLrHGef~lr~~~dEk~~~~~wn~~s~vlav~~-~n~~~lwttkNy 326 (1243)
T COG5290 249 EHQLSWKPQGSKYATIGTDGCSTSESVIFFER-NGLRHGEFDLRVGCDEKAFLENWNLLSTVLAVAE-GNLLKLWTTKNY 326 (1243)
T ss_pred hhccccccCCceeeeeccCCCCCcceEEEEcc-CCcccCCccccCCchhhhhhhhhhHHHHHHHHhh-cceEEEEEccce
Confidence 34589999999999877655 3445542 22111111 11233456677876666665543 468999998887
Q ss_pred cEEEeeCCCCCCeEEEEEecCCCE-EEEEECCcEEEEEe
Q 001462 217 ELIGSTRPEVTGVHAITFHPDGRT-LFSGFDDNLKVYSW 254 (1074)
Q Consensus 217 ~~i~t~~~~~~~ItsIafSPDG~~-LasGsd~~I~Vwd~ 254 (1074)
...-.......++.-+.|+|.... |.....+.|...++
T Consensus 327 hWYLK~e~~ip~~s~vkwhpe~~nTl~f~d~~~I~~V~f 365 (1243)
T COG5290 327 HWYLKVERQIPGISYVKWHPEEKNTLLFRDGERILRVFF 365 (1243)
T ss_pred EEEEEEeecCCCcceeeeccccCcEEEEecCCeEEEEEe
Confidence 665554445566788899996433 33333334443333
|
|
| >PF14761 HPS3_N: Hermansky-Pudlak syndrome 3 | Back alignment and domain information |
|---|
Probab=87.76 E-value=31 Score=37.73 Aligned_cols=104 Identities=16% Similarity=0.182 Sum_probs=67.6
Q ss_pred CEEEEEECCCeEEEEECC--CCceEEEeeecCCCeEEEEEcCCCcEEEEEeCC---C---eEEEE-ECCC----CcEEE-
Q 001462 155 RWVVSGGFDNVVKVWDLT--AGKLLHDFKFHEGHIRSIDFHPLEFLLATGSAD---R---TVKFW-DLET----FELIG- 220 (1074)
Q Consensus 155 ~~LaSgs~DGsI~VWDl~--tgk~v~~~~~h~g~ItsLafSPdg~lLaTGS~D---G---tI~IW-Dl~t----g~~i~- 220 (1074)
+.|+.+...+.|.+|++. ..+....|.. -+.|..+.++..|++|++--.+ . .+++| +.+. ...+.
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v 107 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV 107 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence 445444667889999987 3456667764 3789999999999999997432 2 55665 1111 11111
Q ss_pred eeC---------------------CCCCCeEEEEEecCCCEEEEEECCcEEEEEecCCee
Q 001462 221 STR---------------------PEVTGVHAITFHPDGRTLFSGFDDNLKVYSWEPVIC 259 (1074)
Q Consensus 221 t~~---------------------~~~~~ItsIafSPDG~~LasGsd~~I~Vwd~~s~~~ 259 (1074)
.+. +....+.+++..|-..-|++|.++.+.+|.+.....
T Consensus 108 RiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~~~l~lf~l~~~~~ 167 (215)
T PF14761_consen 108 RIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCGNKLVLFTLKYQTI 167 (215)
T ss_pred EEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcCCEEEEEEEEEEEE
Confidence 111 112356788888876667888899999998865443
|
|
| >PLN02193 nitrile-specifier protein | Back alignment and domain information |
|---|
Probab=86.38 E-value=41 Score=40.84 Aligned_cols=105 Identities=15% Similarity=0.187 Sum_probs=53.1
Q ss_pred CCCEEEEEEcC-----CeEEEEEcCCCeeEEEEeC----CCCCeEEEEEcCCCCEEEEEECCC-----eEEEEECCCCeE
Q 001462 69 AEVLVLAGAST-----GVIKLWDLEESKMVRTLTG----HKSNCTAVEFHPFGEFFASGCMDT-----NLKIWDIRKKGC 134 (1074)
Q Consensus 69 dg~~LatGs~D-----G~I~VWDl~tgk~i~tl~~----h~~~VtsLafSPdg~~LaSgS~DG-----sI~IWDi~tg~~ 134 (1074)
++.+++.|+.+ ..+.+||+.+.+-...-.. ....-.++.. -+++.++.|+.++ .+..||+.+..-
T Consensus 228 ~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~-~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W 306 (470)
T PLN02193 228 GSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAA-DEENVYVFGGVSATARLKTLDSYNIVDKKW 306 (470)
T ss_pred CCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEE-ECCEEEEECCCCCCCCcceEEEEECCCCEE
Confidence 45566666654 3578888876543221110 0111122222 2466666666543 467888776543
Q ss_pred EEEEe-----CCCCCeEEEEEcCCCCEEEEEECC----CeEEEEECCCCce
Q 001462 135 IHTYK-----GHTRGINTIRFTPDGRWVVSGGFD----NVVKVWDLTAGKL 176 (1074)
Q Consensus 135 v~~l~-----~h~~~VtsLafSPdG~~LaSgs~D----GsI~VWDl~tgk~ 176 (1074)
...-. ..... ..++. -++++++.++.+ ..+.+||+.+.+-
T Consensus 307 ~~~~~~~~~~~~R~~-~~~~~-~~gkiyviGG~~g~~~~dv~~yD~~t~~W 355 (470)
T PLN02193 307 FHCSTPGDSFSIRGG-AGLEV-VQGKVWVVYGFNGCEVDDVHYYDPVQDKW 355 (470)
T ss_pred EeCCCCCCCCCCCCC-cEEEE-ECCcEEEEECCCCCccCceEEEECCCCEE
Confidence 21110 00111 12222 256777777755 4588999887654
|
|
| >PF14761 HPS3_N: Hermansky-Pudlak syndrome 3 | Back alignment and domain information |
|---|
Probab=85.95 E-value=29 Score=37.97 Aligned_cols=138 Identities=11% Similarity=0.162 Sum_probs=80.1
Q ss_pred CEEEEEECCCeEEEEECC--CCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCC------eEEEE-ECCC----CceEE-
Q 001462 113 EFFASGCMDTNLKIWDIR--KKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDN------VVKVW-DLTA----GKLLH- 178 (1074)
Q Consensus 113 ~~LaSgS~DGsI~IWDi~--tg~~v~~l~~h~~~VtsLafSPdG~~LaSgs~DG------sI~VW-Dl~t----gk~v~- 178 (1074)
+.|+.+...+.|.+|++. .......+. .-+.|..+.++..|+||++--.+. .+++| +++. ...+.
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~-Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v 107 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFS-TVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV 107 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEc-chhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence 455554567889999988 334556665 347899999999999999865432 45554 2221 11111
Q ss_pred Eeee---------------------cCCCeEEEEEcCC-CcEEEEEeCCCeEEEEECCCCcE-EE-----eeC----CCC
Q 001462 179 DFKF---------------------HEGHIRSIDFHPL-EFLLATGSADRTVKFWDLETFEL-IG-----STR----PEV 226 (1074)
Q Consensus 179 ~~~~---------------------h~g~ItsLafSPd-g~lLaTGS~DGtI~IWDl~tg~~-i~-----t~~----~~~ 226 (1074)
.+-+ -..++.+++..|- |++| +|+ ++.+.+|.+..... .. .+. .+.
T Consensus 108 RiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~Ll-Vg~-~~~l~lf~l~~~~~~~~~~~~lDFe~~l~~~~ 185 (215)
T PF14761_consen 108 RIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLL-VGC-GNKLVLFTLKYQTIQSEKFSFLDFERSLIDHI 185 (215)
T ss_pred EEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEE-EEc-CCEEEEEEEEEEEEecccccEEechhhhhhee
Confidence 1111 1335677888774 5554 444 56899998764332 11 110 111
Q ss_pred C--CeEEEEEecCCCEEEEEECCcEEEEEec
Q 001462 227 T--GVHAITFHPDGRTLFSGFDDNLKVYSWE 255 (1074)
Q Consensus 227 ~--~ItsIafSPDG~~LasGsd~~I~Vwd~~ 255 (1074)
. ....++|. +.|+|..++..++++.+.
T Consensus 186 ~~~~p~~v~ic--~~yiA~~s~~ev~Vlkl~ 214 (215)
T PF14761_consen 186 DNFKPTQVAIC--EGYIAVMSDLEVLVLKLE 214 (215)
T ss_pred cCceEEEEEEE--eeEEEEecCCEEEEEEEe
Confidence 1 13344443 568888888877777653
|
|
| >PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins | Back alignment and domain information |
|---|
Probab=85.79 E-value=34 Score=40.71 Aligned_cols=32 Identities=28% Similarity=0.482 Sum_probs=25.1
Q ss_pred CCCeEEEEEcCCCcEEEEEeCCCeEEEEECCC
Q 001462 184 EGHIRSIDFHPLEFLLATGSADRTVKFWDLET 215 (1074)
Q Consensus 184 ~g~ItsLafSPdg~lLaTGS~DGtI~IWDl~t 215 (1074)
...|.++++.+..++|++...+|.|.+|++..
T Consensus 189 ~~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 189 RPKIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp ---EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred hhceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 34488999998889999999999999999974
|
RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A. |
| >KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=84.78 E-value=39 Score=44.02 Aligned_cols=227 Identities=16% Similarity=0.065 Sum_probs=104.5
Q ss_pred cEEEEEECCCeEEEEECCCCce---EEE------e--eCCCCCeEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeeEEEEe
Q 001462 29 RFLITGGDDQKVNLWAIGKPTA---LMS------L--CGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLT 97 (1074)
Q Consensus 29 ~lLaTGs~DGtV~IWDl~t~k~---l~s------l--~~hs~~ItsLafSpdg~~LatGs~DG~I~VWDl~tgk~i~tl~ 97 (1074)
..++.|+.+|.+.+|.+..... ... + .-+..+|..+...+.-.++++- .|+.|.++++.+-+......
T Consensus 27 ~~l~vGt~~G~L~lY~i~~~~~~~~~~~~~~~~~~~~~~~kk~i~~l~~~~~~~~ll~l-~dsqi~~~~l~~~~~~~~~~ 105 (877)
T KOG2063|consen 27 NHLYVGTRDGDLYLYSIYERGNPESVELVTETVKFEKEFSKKPINKLLVCASLELLLIL-SDSQIAVHKLPELEPVPSGT 105 (877)
T ss_pred CEEEEEcCCCcEEEEeccccccccchhhhcchhHHhhhhccchhHHHhhcchhcchhee-cCCcceeeecCccccccccc
Confidence 5799999999999998843211 100 0 0123556655555544444443 46678888776544321111
Q ss_pred CCCCCeEEEEE--cC--CC--CEEEEEEC--CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEE
Q 001462 98 GHKSNCTAVEF--HP--FG--EFFASGCM--DTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVW 169 (1074)
Q Consensus 98 ~h~~~VtsLaf--SP--dg--~~LaSgS~--DGsI~IWDi~tg~~v~~l~~h~~~VtsLafSPdG~~LaSgs~DGsI~VW 169 (1074)
+-.++...++ .+ .| .+.++... .....+|+-+.+-.+..--+.......++|. |..+.+|-.+....+|
T Consensus 106 -~~Kg~~~f~~~~~~~s~~~~~~~i~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~--~~~~c~~~~~~~~ii~ 182 (877)
T KOG2063|consen 106 -RLKGASLFTIDLRPISTGPSVYEICLSVRKRLIRFFWNGRDGIVLVKELGFPDVPKARAWC--GHIVCLGLKKSYYIIN 182 (877)
T ss_pred -ccccceeeccccccccCCcceEEEEeeccceEEEEEecCCCceEEEEecccccchhhhccc--ceeEEEeecceeEEEe
Confidence 1111111111 11 12 23333332 2334455544444333332333334445553 4444444443344444
Q ss_pred ECCCCceEEEeeec---CCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCCcEE-EeeCCCCCCeEEEEEecCCCEEEEEE
Q 001462 170 DLTAGKLLHDFKFH---EGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELI-GSTRPEVTGVHAITFHPDGRTLFSGF 245 (1074)
Q Consensus 170 Dl~tgk~v~~~~~h---~g~ItsLafSPdg~lLaTGS~DGtI~IWDl~tg~~i-~t~~~~~~~ItsIafSPDG~~LasGs 245 (1074)
...++.....+-.. ...-..+.-..++..++.| .|+...+-|.. |... ..-.........+. -+..|+++-.
T Consensus 183 ~~~~~~~~~~~~s~~~~~s~~P~I~~l~~~~~ll~~-kd~~gv~vd~~-G~~~~~~~l~ws~~P~~v~--~~~PYlIa~~ 258 (877)
T KOG2063|consen 183 NTSKGVGPNLFPSSMDNESRKPLIKSLSDQSELLLG-KDNIGVVVDLN-GIIAQRGTLVWSEVPLSVV--VESPYLIALL 258 (877)
T ss_pred cCCCccccceeeeccccccCCCeEEEecCCceEEEc-cCceEEEEecC-CcccCCCceEecccchhhc--ccCceEEEEc
Confidence 44444211111100 1111223333455455555 56666666644 3221 00000000011111 1456888877
Q ss_pred CCcEEEEEecCCeeeecc
Q 001462 246 DDNLKVYSWEPVICHDSV 263 (1074)
Q Consensus 246 d~~I~Vwd~~s~~~~~~l 263 (1074)
+..+.||+..+..++..+
T Consensus 259 ~~~veI~s~~~~qlvQSI 276 (877)
T KOG2063|consen 259 DRSVEIRSKLDGQLVQSI 276 (877)
T ss_pred cccEEEEeccCHHHhhcc
Confidence 789999999988766665
|
|
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=84.78 E-value=19 Score=45.65 Aligned_cols=152 Identities=13% Similarity=0.190 Sum_probs=92.3
Q ss_pred CCCEEEEEEecCCCcEEEEEECCCeEEEEECCCCceEE------Eee----------------CCCCCeEEEEEcC--CC
Q 001462 15 SANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALM------SLC----------------GLSSPVDSVAFDS--AE 70 (1074)
Q Consensus 15 s~~Vt~IafSPdg~~lLaTGs~DGtV~IWDl~t~k~l~------sl~----------------~hs~~ItsLafSp--dg 70 (1074)
.+...++.= . .+|++|. .+.|.||++....... .+. .....|..+.... +.
T Consensus 40 KNNLtalsq---~-n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~ 114 (717)
T PF08728_consen 40 KNNLTALSQ---R-NLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGE 114 (717)
T ss_pred ccceeEEec---C-CEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCe
Confidence 344455432 3 4666655 5789999984322211 110 0112344444332 45
Q ss_pred CEEEEEEcCCeEEEEEcCC-------C----e---------eEEEEeCCCCCeEEEEEc--CCCCEEEEEECCCeEEEEE
Q 001462 71 VLVLAGASTGVIKLWDLEE-------S----K---------MVRTLTGHKSNCTAVEFH--PFGEFFASGCMDTNLKIWD 128 (1074)
Q Consensus 71 ~~LatGs~DG~I~VWDl~t-------g----k---------~i~tl~~h~~~VtsLafS--Pdg~~LaSgS~DGsI~IWD 128 (1074)
..|+++..||.|.+|.++. . + +...+. ....++.++++ ...++||+++....|.||-
T Consensus 115 EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFa 193 (717)
T PF08728_consen 115 EVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIAVSSNSQEVTVFA 193 (717)
T ss_pred eEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEEEecCCceEEEEE
Confidence 6889999999999997631 1 0 111122 34578999998 7788899988888888886
Q ss_pred CCCC--eEEE-EEeCCCCCeEEEEEcCCC---C---EEEEEECCCeEEEEECC
Q 001462 129 IRKK--GCIH-TYKGHTRGINTIRFTPDG---R---WVVSGGFDNVVKVWDLT 172 (1074)
Q Consensus 129 i~tg--~~v~-~l~~h~~~VtsLafSPdG---~---~LaSgs~DGsI~VWDl~ 172 (1074)
+... +... .-..+...|-+++|.++. . ++++++-.|.+.+|++.
T Consensus 194 f~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I~ 246 (717)
T PF08728_consen 194 FALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKIK 246 (717)
T ss_pred EeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEEE
Confidence 5432 1111 011255668899998743 2 78888999999998873
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >COG5290 IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=84.44 E-value=31 Score=43.72 Aligned_cols=72 Identities=15% Similarity=0.103 Sum_probs=44.8
Q ss_pred CCeEEEEEcCCCcEEEEEeCCCe-----EEEEECCCCcEEEee---CCCCCCeEEEEEecCCCEEEEEECCcEEEEEecC
Q 001462 185 GHIRSIDFHPLEFLLATGSADRT-----VKFWDLETFELIGST---RPEVTGVHAITFHPDGRTLFSGFDDNLKVYSWEP 256 (1074)
Q Consensus 185 g~ItsLafSPdg~lLaTGS~DGt-----I~IWDl~tg~~i~t~---~~~~~~ItsIafSPDG~~LasGsd~~I~Vwd~~s 256 (1074)
|.-..+.|-|+|..+++-+.||. |.++.-+.. .-..+ .+....+...+|.-....++....+.+.+|-..+
T Consensus 247 g~e~~LSWkpqgS~~ati~td~~~~S~~ViFfErNGL-rHGef~lr~~~dEk~~~~~wn~~s~vlav~~~n~~~lwttkN 325 (1243)
T COG5290 247 GMEHQLSWKPQGSKYATIGTDGCSTSESVIFFERNGL-RHGEFDLRVGCDEKAFLENWNLLSTVLAVAEGNLLKLWTTKN 325 (1243)
T ss_pred cchhccccccCCceeeeeccCCCCCcceEEEEccCCc-ccCCccccCCchhhhhhhhhhHHHHHHHHhhcceEEEEEccc
Confidence 33456899999999999886663 555543321 11111 1222345667787777777777777788887654
Q ss_pred C
Q 001462 257 V 257 (1074)
Q Consensus 257 ~ 257 (1074)
.
T Consensus 326 y 326 (1243)
T COG5290 326 Y 326 (1243)
T ss_pred e
Confidence 3
|
|
| >PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12 | Back alignment and domain information |
|---|
Probab=84.43 E-value=81 Score=35.94 Aligned_cols=163 Identities=11% Similarity=0.154 Sum_probs=90.6
Q ss_pred eEEEEECCCCceEEEeeCC------CCCeEEEEEcCCC-----CEEEEEE-cCCeEEEEEcCCCeeEEEEeCC-------
Q 001462 39 KVNLWAIGKPTALMSLCGL------SSPVDSVAFDSAE-----VLVLAGA-STGVIKLWDLEESKMVRTLTGH------- 99 (1074)
Q Consensus 39 tV~IWDl~t~k~l~sl~~h------s~~ItsLafSpdg-----~~LatGs-~DG~I~VWDl~tgk~i~tl~~h------- 99 (1074)
.|.+||+.+.+.++.+.-. ...+..+.+.... .+++... ..+-|.|+|+.+++..+.+..+
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~ 114 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA 114 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence 7899999999988776532 3456677776521 2343333 3457999999998766554322
Q ss_pred ------------CCCeEEEEEcC---CCCEEEEEECCCeEEEEECC-----CC---------eEEEEEeCCCCCeEEEEE
Q 001462 100 ------------KSNCTAVEFHP---FGEFFASGCMDTNLKIWDIR-----KK---------GCIHTYKGHTRGINTIRF 150 (1074)
Q Consensus 100 ------------~~~VtsLafSP---dg~~LaSgS~DGsI~IWDi~-----tg---------~~v~~l~~h~~~VtsLaf 150 (1074)
...+..++.+| ++++|+.+...+ -.+|.+. .. ..++.+-........+++
T Consensus 115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss-~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~ 193 (287)
T PF03022_consen 115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS-RKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAI 193 (287)
T ss_dssp EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT--SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEE
T ss_pred cceeccCceEecCCCccccccCCCCCCccEEEEEeCCC-CcEEEEEHHHhhCccccccccccccceeccccCCCCceEEE
Confidence 12355555554 555565554333 2223221 11 012222112235667889
Q ss_pred cCCCCEEEEEECCCeEEEEECCCC----ceEEEeee-c-CCCeEEEEEcC--CCcEEEEE
Q 001462 151 TPDGRWVVSGGFDNVVKVWDLTAG----KLLHDFKF-H-EGHIRSIDFHP--LEFLLATG 202 (1074)
Q Consensus 151 SPdG~~LaSgs~DGsI~VWDl~tg----k~v~~~~~-h-~g~ItsLafSP--dg~lLaTG 202 (1074)
+++|.++++--..+.|..|+..+. ........ . -..+..+.+.+ +|.+.+..
T Consensus 194 D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~s 253 (287)
T PF03022_consen 194 DPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLS 253 (287)
T ss_dssp ETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE
T ss_pred CCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEE
Confidence 999988888888899999998762 11111121 1 34678888888 66554444
|
5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B. |
| >PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes | Back alignment and domain information |
|---|
Probab=84.06 E-value=21 Score=39.78 Aligned_cols=138 Identities=14% Similarity=0.172 Sum_probs=79.7
Q ss_pred eEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEEC-C--CeEEEEECCC----CceEE---EeeecCCCeEEEEE
Q 001462 123 NLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGF-D--NVVKVWDLTA----GKLLH---DFKFHEGHIRSIDF 192 (1074)
Q Consensus 123 sI~IWDi~tg~~v~~l~~h~~~VtsLafSPdG~~LaSgs~-D--GsI~VWDl~t----gk~v~---~~~~h~g~ItsLaf 192 (1074)
.-.+||+.+++....--...-.+..-.|.+||++|.+|+. + ..+++++... ..... .+ ....+--+...
T Consensus 47 ~s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m-~~~RWYpT~~~ 125 (243)
T PF07250_consen 47 HSVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDM-QSGRWYPTATT 125 (243)
T ss_pred EEEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccc-cCCCccccceE
Confidence 3568998887643322223334455568899999999875 2 3577777544 11110 11 12233445556
Q ss_pred cCCCcEEEEEeCCC-eEEEEECCC--CcEEE-eeC------CCCCCeEEEEEecCCCEEEEEECCcEEEEEecCCeeeec
Q 001462 193 HPLEFLLATGSADR-TVKFWDLET--FELIG-STR------PEVTGVHAITFHPDGRTLFSGFDDNLKVYSWEPVICHDS 262 (1074)
Q Consensus 193 SPdg~lLaTGS~DG-tI~IWDl~t--g~~i~-t~~------~~~~~ItsIafSPDG~~LasGsd~~I~Vwd~~s~~~~~~ 262 (1074)
-|||+.|+.|+.+. +..+|.-.. ..... .+. ........+...|+|++++.+..+. .|||+........
T Consensus 126 L~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s-~i~d~~~n~v~~~ 204 (243)
T PF07250_consen 126 LPDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGS-IIYDYKTNTVVRT 204 (243)
T ss_pred CCCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCc-EEEeCCCCeEEee
Confidence 67999999998764 344554321 11111 111 1122344677789999998887766 6889887755433
|
Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium []. |
| >PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast) | Back alignment and domain information |
|---|
Probab=83.98 E-value=1.3e+02 Score=38.14 Aligned_cols=234 Identities=10% Similarity=0.149 Sum_probs=118.5
Q ss_pred EEecCCCcEEEEEECCCeEEEEEC-CCCceEEEeeC-CCCCeEEEEEcCC---CCEEEEEEcCC-eEEEEEcCCC-----
Q 001462 22 SIGKKACRFLITGGDDQKVNLWAI-GKPTALMSLCG-LSSPVDSVAFDSA---EVLVLAGASTG-VIKLWDLEES----- 90 (1074)
Q Consensus 22 afSPdg~~lLaTGs~DGtV~IWDl-~t~k~l~sl~~-hs~~ItsLafSpd---g~~LatGs~DG-~I~VWDl~tg----- 90 (1074)
.++|+. ..+-.|=....|--|=+ .+++.++.+.- ...-|.||..... ..+.++|-.++ .-++..+..+
T Consensus 34 ~~s~~s-n~IdiGIS~S~ISsYIi~PTPKLiwsypi~pt~iV~~~dV~~~~~~~~~~~~glt~rKk~~ll~i~~~~~~~~ 112 (670)
T PF10395_consen 34 DFSPDS-NQIDIGISGSAISSYIIKPTPKLIWSYPISPTTIVECCDVLEKSDGKKLYCVGLTERKKFKLLLIERKVGSTE 112 (670)
T ss_pred ccCCCC-ceEEEEeccchhhheecCCCcceeEeeccCcCceEEEEEeEecCCCcEEEEEEEeeCCeeEEEEEEccCcccc
Confidence 556666 33333333333444433 35666666543 3445666665432 23444443333 2333332222
Q ss_pred ------e--eEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeE--EEEEeC-CCCCeEEEEEcC------C
Q 001462 91 ------K--MVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGC--IHTYKG-HTRGINTIRFTP------D 153 (1074)
Q Consensus 91 ------k--~i~tl~~h~~~VtsLafSPdg~~LaSgS~DGsI~IWDi~tg~~--v~~l~~-h~~~VtsLafSP------d 153 (1074)
+ ....++ -.+.|-.+.|..+++.+++...+|.|.+||...+.. +..+.. +...+..=+|-+ .
T Consensus 113 ~~~~~~e~~~~~~~k-l~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~ 191 (670)
T PF10395_consen 113 DGTVNSETTNEFELK-LDDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENG 191 (670)
T ss_pred ccccCccccceEEEE-cccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccC
Confidence 1 112233 367789999999999999999999999999833221 112211 111111112222 2
Q ss_pred CCEEEEEEC-C---CeEEEEEC-CCCceEEEee---ecCCCe--EEEEEcCCCcEEEEEeCCCeEEEEECCCCcEEEeeC
Q 001462 154 GRWVVSGGF-D---NVVKVWDL-TAGKLLHDFK---FHEGHI--RSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTR 223 (1074)
Q Consensus 154 G~~LaSgs~-D---GsI~VWDl-~tgk~v~~~~---~h~g~I--tsLafSPdg~lLaTGS~DGtI~IWDl~tg~~i~t~~ 223 (1074)
..++++.+. + -..+++.+ .....+.++. .+.... ..+++. +|.+... .++.|.+|++...+...++.
T Consensus 192 ~~~ll~v~~~~~~k~~ykL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~-~G~LY~l--~~~~i~~ysip~f~~~~tI~ 268 (670)
T PF10395_consen 192 KDLLLTVSQLSNSKLSYKLISLSNESSSIFELSSTILENFGLEDSKFCYQ-FGKLYQL--SKKTISSYSIPNFQIQKTIS 268 (670)
T ss_pred CceEEEEEEcCCCcEEEEEEEeccCCcceEEeehheeccCCcccceEEEe-CCEEEEE--eCCEEEEEEcCCceEEEEEE
Confidence 234444443 2 24566776 1122222222 112122 223333 4544433 67899999999887666543
Q ss_pred CC-----C-CCeEEEEEecCCCEEEEEECCcEEEEEecCCeeee
Q 001462 224 PE-----V-TGVHAITFHPDGRTLFSGFDDNLKVYSWEPVICHD 261 (1074)
Q Consensus 224 ~~-----~-~~ItsIafSPDG~~LasGsd~~I~Vwd~~s~~~~~ 261 (1074)
.. . ..+.++. .|....++.+.++.|++.|+.-.....
T Consensus 269 l~~ii~~~~~~~vSl~-~~s~nRvLLs~~nkIyLld~~~~siLs 311 (670)
T PF10395_consen 269 LPSIIDKESDDLVSLK-PPSPNRVLLSVNNKIYLLDLKFESILS 311 (670)
T ss_pred echhhccccccceEee-cCCCCeEEEEcCCEEEEEeehhhhhhh
Confidence 22 1 1223332 345566777778889999886444333
|
It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex []. |
| >COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=83.81 E-value=37 Score=37.13 Aligned_cols=170 Identities=13% Similarity=0.107 Sum_probs=95.3
Q ss_pred cEEEEEEC--CCeEEEEECCCCceEEEeeCCCCCeEEEEEcCCCCE-EEEEEcCCeEEEEEcCCCeeEEEEeCCCCCeEE
Q 001462 29 RFLITGGD--DQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVL-VLAGASTGVIKLWDLEESKMVRTLTGHKSNCTA 105 (1074)
Q Consensus 29 ~lLaTGs~--DGtV~IWDl~t~k~l~sl~~hs~~ItsLafSpdg~~-LatGs~DG~I~VWDl~tgk~i~tl~~h~~~Vts 105 (1074)
.++.+.+. ...|+.||+.+++.+....-....+..=-...-|.+ ....-.+|.-.++|..+-+.+..+. ..+.-+.
T Consensus 57 ~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~-y~GeGWg 135 (262)
T COG3823 57 HILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFS-YEGEGWG 135 (262)
T ss_pred EEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccc-cCCccee
Confidence 56665554 346999999988887765432111111111111222 2233467888899988877776665 3333344
Q ss_pred EEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEe----C-CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEe
Q 001462 106 VEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYK----G-HTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDF 180 (1074)
Q Consensus 106 LafSPdg~~LaSgS~DGsI~IWDi~tg~~v~~l~----~-h~~~VtsLafSPdG~~LaSgs~DGsI~VWDl~tgk~v~~~ 180 (1074)
++ .|++.|+.++....+++-|.++......+. + .-..+..+.|- +|...+-.-.+..|...|..+|+.+..+
T Consensus 136 Lt--~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~sGrV~~wi 212 (262)
T COG3823 136 LT--SDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARIDPDSGRVVAWI 212 (262)
T ss_pred ee--cCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEcCCCCcEEEEE
Confidence 44 356667777666677777776554433322 1 11223445554 4554444445556666777777766554
Q ss_pred e------------ecCCCeEEEEEcCCC-cEEEEE
Q 001462 181 K------------FHEGHIRSIDFHPLE-FLLATG 202 (1074)
Q Consensus 181 ~------------~h~g~ItsLafSPdg-~lLaTG 202 (1074)
. .|..-...+++.|++ +++++|
T Consensus 213 dlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 213 DLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred EccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 3 233456788888877 444544
|
|
| >KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=83.51 E-value=38 Score=45.10 Aligned_cols=26 Identities=19% Similarity=0.290 Sum_probs=23.7
Q ss_pred cCCCcEEEEEeCCCeEEEEECCCCcE
Q 001462 193 HPLEFLLATGSADRTVKFWDLETFEL 218 (1074)
Q Consensus 193 SPdg~lLaTGS~DGtI~IWDl~tg~~ 218 (1074)
..++..++++..||.+.+||...++.
T Consensus 243 ~~~~~~~v~~h~Dgs~~fWd~s~g~~ 268 (993)
T KOG1983|consen 243 SRDGSHFVSYHTDGSYAFWDVSSGKL 268 (993)
T ss_pred ccCCceEEEEEecCCEEeeecCCCce
Confidence 77899999999999999999998765
|
|
| >KOG2247 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=83.04 E-value=0.18 Score=59.75 Aligned_cols=147 Identities=10% Similarity=0.155 Sum_probs=100.0
Q ss_pred eEEEEEcCCCCEEEEEEcCCeEEEEEcCCCeeEEEEeCCCCCeEEEEEcCCCCEEEE-EECCCeEEEEECCCCeEEEEEe
Q 001462 61 VDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFAS-GCMDTNLKIWDIRKKGCIHTYK 139 (1074)
Q Consensus 61 ItsLafSpdg~~LatGs~DG~I~VWDl~tgk~i~tl~~h~~~VtsLafSPdg~~LaS-gS~DGsI~IWDi~tg~~v~~l~ 139 (1074)
.....|-+.+.-++.++.+..+..||- .++....+. ..+....++|..++..+++ +-..+.+++||+.+....+.-.
T Consensus 37 pi~~~w~~e~~nlavaca~tiv~~YD~-agq~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~ 114 (615)
T KOG2247|consen 37 PIIHRWRPEGHNLAVACANTIVIYYDK-AGQVILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLES 114 (615)
T ss_pred cceeeEecCCCceehhhhhhHHHhhhh-hcceecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhc
Confidence 345678887777888888888999984 444444443 4566778999988875544 4457889999987543211111
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEeeecCCCeEEEEEcCCCcEEEEEeCCCeEEE
Q 001462 140 GHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKF 210 (1074)
Q Consensus 140 ~h~~~VtsLafSPdG~~LaSgs~DGsI~VWDl~tgk~v~~~~~h~g~ItsLafSPdg~lLaTGS~DGtI~I 210 (1074)
+....-.-+.|++.+..++.|...|.+.+|+..+.+.+...-.|...+.+++|.+.+.. +.++.|..+.+
T Consensus 115 gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~v-il~dcd~~L~v 184 (615)
T KOG2247|consen 115 GGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYV-ILCDCDNTLSV 184 (615)
T ss_pred cCcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEeccccee-eecCcHHHHHH
Confidence 11222223788988888899989999999998877666555557888999999986644 44444544433
|
|
| >PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin | Back alignment and domain information |
|---|
Probab=82.26 E-value=7.5 Score=42.48 Aligned_cols=67 Identities=9% Similarity=0.082 Sum_probs=50.8
Q ss_pred cCCCcEEEEEeCCCeEEEEECCCCcEEEee-------C-------CCCCCeEEEEEecCCCEEEEEECCcEEEEEecCCe
Q 001462 193 HPLEFLLATGSADRTVKFWDLETFELIGST-------R-------PEVTGVHAITFHPDGRTLFSGFDDNLKVYSWEPVI 258 (1074)
Q Consensus 193 SPdg~lLaTGS~DGtI~IWDl~tg~~i~t~-------~-------~~~~~ItsIafSPDG~~LasGsd~~I~Vwd~~s~~ 258 (1074)
..++.+|++.+.+|.+++||+.+++.+... . .....|..+.++.+|.-|++-+++..+.|+.+-..
T Consensus 19 ~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~~L~~ 98 (219)
T PF07569_consen 19 ECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYSPDLGC 98 (219)
T ss_pred EeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEeccccce
Confidence 346788999999999999999988765432 1 24456888889989988888778877888776544
Q ss_pred e
Q 001462 259 C 259 (1074)
Q Consensus 259 ~ 259 (1074)
.
T Consensus 99 W 99 (219)
T PF07569_consen 99 W 99 (219)
T ss_pred e
Confidence 3
|
These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus |
| >PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes | Back alignment and domain information |
|---|
Probab=82.24 E-value=22 Score=39.65 Aligned_cols=144 Identities=17% Similarity=0.229 Sum_probs=82.1
Q ss_pred eEEEEEcCCCeeEEEEeCCCCCeEEEEEcCCCCEEEEEEC-C--CeEEEEECCC--CeEEE-----EEeCCCCCeEEEEE
Q 001462 81 VIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCM-D--TNLKIWDIRK--KGCIH-----TYKGHTRGINTIRF 150 (1074)
Q Consensus 81 ~I~VWDl~tgk~i~tl~~h~~~VtsLafSPdg~~LaSgS~-D--GsI~IWDi~t--g~~v~-----~l~~h~~~VtsLaf 150 (1074)
.-.+||+.+++....-....--+.+-.|.+||+.+.+|+. + ..+++++... +.+-. .+. ....--....
T Consensus 47 ~s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~-~~RWYpT~~~ 125 (243)
T PF07250_consen 47 HSVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQ-SGRWYPTATT 125 (243)
T ss_pred EEEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECccccc-CCCccccceE
Confidence 3558999887653332223344555678899999998865 2 3477887543 11111 111 1222334555
Q ss_pred cCCCCEEEEEECCC-eEEEEECCC-CceEEEe--e------ecCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCCcEEE
Q 001462 151 TPDGRWVVSGGFDN-VVKVWDLTA-GKLLHDF--K------FHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIG 220 (1074)
Q Consensus 151 SPdG~~LaSgs~DG-sI~VWDl~t-gk~v~~~--~------~h~g~ItsLafSPdg~lLaTGS~DGtI~IWDl~tg~~i~ 220 (1074)
.+||+.|+.|+... ..-+|.-.. ......+ - ....---.+...|+|++++.+..+ -.|||..+.+.+.
T Consensus 126 L~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~--s~i~d~~~n~v~~ 203 (243)
T PF07250_consen 126 LPDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRG--SIIYDYKTNTVVR 203 (243)
T ss_pred CCCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCC--cEEEeCCCCeEEe
Confidence 67999999988764 344555321 1111111 1 011112346678999999888764 4677888887766
Q ss_pred eeCCCCC
Q 001462 221 STRPEVT 227 (1074)
Q Consensus 221 t~~~~~~ 227 (1074)
.+....+
T Consensus 204 ~lP~lPg 210 (243)
T PF07250_consen 204 TLPDLPG 210 (243)
T ss_pred eCCCCCC
Confidence 6655433
|
Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium []. |
| >PRK05560 DNA gyrase subunit A; Validated | Back alignment and domain information |
|---|
Probab=81.62 E-value=1.8e+02 Score=38.03 Aligned_cols=205 Identities=9% Similarity=-0.010 Sum_probs=102.2
Q ss_pred cEEEEEECCCeEEEEEC---CC------CceE---EEeeCCCCCeEEEEEcC--CCCEEEEEEcCCeEEEEEcCC-----
Q 001462 29 RFLITGGDDQKVNLWAI---GK------PTAL---MSLCGLSSPVDSVAFDS--AEVLVLAGASTGVIKLWDLEE----- 89 (1074)
Q Consensus 29 ~lLaTGs~DGtV~IWDl---~t------~k~l---~sl~~hs~~ItsLafSp--dg~~LatGs~DG~I~VWDl~t----- 89 (1074)
..|+..+..|.+..... .. |..+ ..+.....-+.++.+.. +..+++..+.+|.++-.++..
T Consensus 549 d~LllfTs~Grv~~l~v~~iP~~~~~~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~e~~lvlvTk~GyiKRi~l~~~~~~~ 628 (805)
T PRK05560 549 DTLLFFTNRGRVYRLKVYEIPEASRTARGRPIVNLLPLEPGEKITAILPVREFDDDKYLFFATKNGTVKKTSLSEFSNIR 628 (805)
T ss_pred CeEEEEecCCeEEEEEhhhCcCCCcCCCCeEHHHhcCCCCCceEEEEEeccCCCCCCEEEEEeCCCEEEEEEhHHhhhcc
Confidence 34555566677665543 21 2222 12222223345555552 567889999999998776643
Q ss_pred --CeeEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC---------CeEEEEEeCCCCCeEE-EEEcCCCCEE
Q 001462 90 --SKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRK---------KGCIHTYKGHTRGINT-IRFTPDGRWV 157 (1074)
Q Consensus 90 --gk~i~tl~~h~~~VtsLafSPdg~~LaSgS~DGsI~IWDi~t---------g~~v~~l~~h~~~Vts-LafSPdG~~L 157 (1074)
|.....+.. .+.+..+........++..+..|.+..+.... |.....+. ....|.. +.+.+++.++
T Consensus 629 r~G~~~ikLke-~D~lv~v~~~~~~d~lll~T~~Gr~~r~~~~eIp~~gr~~~Gv~~i~L~-~~E~Vv~~~~v~~~~~~i 706 (805)
T PRK05560 629 SNGIIAINLDE-GDELIGVRLTDGDDDILLATKNGKAIRFPESDVRPMGRTARGVRGIKLR-EGDEVVSMDVVREDSQEI 706 (805)
T ss_pred cCCceeeccCC-CCEEEEEEEeCCCCEEEEEECCCcEEEEEhhhcCccCcccCCcccccCC-CCCEEEEEEEEcCCCcEE
Confidence 222223332 33444444444455666667788877776532 11222222 2233333 3444444467
Q ss_pred EEEECCCeEEEEECCC-------CceEEEe--eecCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCCcEEEeeCCCCCC
Q 001462 158 VSGGFDNVVKVWDLTA-------GKLLHDF--KFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTG 228 (1074)
Q Consensus 158 aSgs~DGsI~VWDl~t-------gk~v~~~--~~h~g~ItsLafSPdg~lLaTGS~DGtI~IWDl~tg~~i~t~~~~~~~ 228 (1074)
+..+..|.++...+.. ++-+..+ ....+.+..+........++..+.+|.+..++...- ........+
T Consensus 707 l~vTk~G~iKr~~l~e~~~~~R~~kG~~~lkl~~~~d~lv~v~~v~~~~~v~i~T~~G~~lrf~~~eI---~~~gR~a~G 783 (805)
T PRK05560 707 LTVTENGYGKRTPVSEYRLQGRGGKGVITIKITEKNGKLVGALPVDDDDEIMLITDSGKLIRTRVSEI---SITGRNTQG 783 (805)
T ss_pred EEEEeCCeEEEEEHHHhhccCCCCCcEEeeeccCCCCeEEEEEEecCCCeEEEEecCCeEEEEEHHHC---CccccCCCC
Confidence 7888889888776432 1122222 222233333322223344555666777777766432 112222344
Q ss_pred eEEEEEecCC
Q 001462 229 VHAITFHPDG 238 (1074)
Q Consensus 229 ItsIafSPDG 238 (1074)
+..+.+..++
T Consensus 784 Vk~I~L~~~D 793 (805)
T PRK05560 784 VRLIRLDEGD 793 (805)
T ss_pred eeeEecCCCC
Confidence 5666664443
|
|
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=81.38 E-value=14 Score=44.15 Aligned_cols=83 Identities=14% Similarity=0.269 Sum_probs=60.7
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeCCCCCeEEEEEcC---C-C----------------C-E
Q 001462 98 GHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTP---D-G----------------R-W 156 (1074)
Q Consensus 98 ~h~~~VtsLafSPdg~~LaSgS~DGsI~IWDi~tg~~v~~l~~h~~~VtsLafSP---d-G----------------~-~ 156 (1074)
.....+.+++.+|++++.++...-|.|.++|+..+..++.+++..+. .+.|.. . . . +
T Consensus 305 D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdA--qc~wi~~~~~~~~~~~~~~~~~~~~~~~l~L 382 (415)
T PF14655_consen 305 DSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDA--QCGWIEVPEEGDRDRSNSNSPKSSSRFALFL 382 (415)
T ss_pred cCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccc--eEEEEEeecccccccccccccCCCCcceEEE
Confidence 34456889999999998888877799999999999988888875542 122211 1 1 1 2
Q ss_pred EEEEECCCeEEEEECCCCceEEEeee
Q 001462 157 VVSGGFDNVVKVWDLTAGKLLHDFKF 182 (1074)
Q Consensus 157 LaSgs~DGsI~VWDl~tgk~v~~~~~ 182 (1074)
++.+-.-|.|-||.++.|..+..+..
T Consensus 383 vIyaprRg~lEvW~~~~g~Rv~a~~v 408 (415)
T PF14655_consen 383 VIYAPRRGILEVWSMRQGPRVAAFNV 408 (415)
T ss_pred EEEeccCCeEEEEecCCCCEEEEEEe
Confidence 34456688999999999988877764
|
|
| >PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal | Back alignment and domain information |
|---|
Probab=81.06 E-value=41 Score=34.22 Aligned_cols=112 Identities=13% Similarity=0.137 Sum_probs=69.9
Q ss_pred EEEcCCCCEEEEEECCCeEEEEECCCC--------eEEEEEeCCCCCeEEEEEcC-----CCCEEEEEECCCeEEEEECC
Q 001462 106 VEFHPFGEFFASGCMDTNLKIWDIRKK--------GCIHTYKGHTRGINTIRFTP-----DGRWVVSGGFDNVVKVWDLT 172 (1074)
Q Consensus 106 LafSPdg~~LaSgS~DGsI~IWDi~tg--------~~v~~l~~h~~~VtsLafSP-----dG~~LaSgs~DGsI~VWDl~ 172 (1074)
-.|......|++++.-|+|.|++.... ..+..+. ....|++|+-.+ +...|+.|+ ...|..||+.
T Consensus 4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt-~t~llaYDV~ 81 (136)
T PF14781_consen 4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDVE 81 (136)
T ss_pred EEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEcc
Confidence 456656667888888999999987533 2344444 445677776544 234666665 5678999998
Q ss_pred CCceEEEeeecCCCeEEEEEcC----CCcEEEEEeCCCeEEEEECCCCcEEEe
Q 001462 173 AGKLLHDFKFHEGHIRSIDFHP----LEFLLATGSADRTVKFWDLETFELIGS 221 (1074)
Q Consensus 173 tgk~v~~~~~h~g~ItsLafSP----dg~lLaTGS~DGtI~IWDl~tg~~i~t 221 (1074)
...-+.....+ ..+.++.+-. ...++++| .+..|.-||....+..+.
T Consensus 82 ~N~d~Fyke~~-DGvn~i~~g~~~~~~~~l~ivG-Gncsi~Gfd~~G~e~fWt 132 (136)
T PF14781_consen 82 NNSDLFYKEVP-DGVNAIVIGKLGDIPSPLVIVG-GNCSIQGFDYEGNEIFWT 132 (136)
T ss_pred cCchhhhhhCc-cceeEEEEEecCCCCCcEEEEC-ceEEEEEeCCCCcEEEEE
Confidence 77655444433 4466666632 23445544 467788888765554443
|
|
| >KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=80.59 E-value=20 Score=47.78 Aligned_cols=139 Identities=16% Similarity=0.185 Sum_probs=89.8
Q ss_pred EECCCeEEEEECCCCceEEEeeCCCCCeEEEEEc--------CCCCEEEEEEcCCeEEEEEcCCCee---------EEEE
Q 001462 34 GGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFD--------SAEVLVLAGASTGVIKLWDLEESKM---------VRTL 96 (1074)
Q Consensus 34 Gs~DGtV~IWDl~t~k~l~sl~~hs~~ItsLafS--------pdg~~LatGs~DG~I~VWDl~tgk~---------i~tl 96 (1074)
.+.|..+.+|+++++.....+.+....|..+..- |.=++|++.+.--.|.++-+.-.+. ...+
T Consensus 95 iTiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i 174 (1311)
T KOG1900|consen 95 ITIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKI 174 (1311)
T ss_pred EEeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceee
Confidence 3458899999999988888888877777776542 2223444444445566665432211 1222
Q ss_pred eCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC--CC---e-E----------------EEEEe-CCCCCeEEEEEcCC
Q 001462 97 TGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIR--KK---G-C----------------IHTYK-GHTRGINTIRFTPD 153 (1074)
Q Consensus 97 ~~h~~~VtsLafSPdg~~LaSgS~DGsI~IWDi~--tg---~-~----------------v~~l~-~h~~~VtsLafSPd 153 (1074)
...+-.|.|+....+|+.|++| .||.|+-.-.. .+ + + +..+. .+.++|..++....
T Consensus 175 ~~dg~~V~~I~~t~nGRIF~~G-~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~S 253 (1311)
T KOG1900|consen 175 SVDGVSVNCITYTENGRIFFAG-RDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNS 253 (1311)
T ss_pred ecCCceEEEEEeccCCcEEEee-cCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEeccc
Confidence 2345678899988888877765 66744432221 11 0 0 01112 35678999999888
Q ss_pred CCEEEEEECCCeEEEEECCC
Q 001462 154 GRWVVSGGFDNVVKVWDLTA 173 (1074)
Q Consensus 154 G~~LaSgs~DGsI~VWDl~t 173 (1074)
-..+.+-+..|.|.+||+..
T Consensus 254 R~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 254 RNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred cceeeeeccCceEEEEEccC
Confidence 78889999999999999975
|
|
| >KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=80.12 E-value=2.3e+02 Score=38.19 Aligned_cols=142 Identities=18% Similarity=0.257 Sum_probs=77.1
Q ss_pred CEEEEEEC---------CCeEEEEECCC-----Ce-----EEEEE--eCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEC
Q 001462 113 EFFASGCM---------DTNLKIWDIRK-----KG-----CIHTY--KGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDL 171 (1074)
Q Consensus 113 ~~LaSgS~---------DGsI~IWDi~t-----g~-----~v~~l--~~h~~~VtsLafSPdG~~LaSgs~DGsI~VWDl 171 (1074)
.||++|.. .|.++|||+-. |+ .++.+ +...+.|..+|= -+|. |+++ ....|.+|++
T Consensus 1047 ~ylavGT~~~~gEDv~~RGr~hi~diIeVVPepgkP~t~~KlKel~~eE~KGtVsavce-V~G~-l~~~-~GqKI~v~~l 1123 (1366)
T KOG1896|consen 1047 PYLAVGTAFIQGEDVPARGRIHIFDIIEVVPEPGKPFTKNKLKELYIEEQKGTVSAVCE-VRGH-LLSS-QGQKIIVRKL 1123 (1366)
T ss_pred ceEEEEEeecccccccCcccEEEEEEEEecCCCCCCcccceeeeeehhhcccceEEEEE-eccE-EEEc-cCcEEEEEEe
Confidence 37777732 38899999732 22 12222 224456665553 3564 4443 4568999999
Q ss_pred -CCCceEEEeeecCCCeEEEEEcCCCcEEEEEeCCCeEEEEECCCC-cEEEeeCC--CCCCeEEEEEecCCCEEEE---E
Q 001462 172 -TAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETF-ELIGSTRP--EVTGVHAITFHPDGRTLFS---G 244 (1074)
Q Consensus 172 -~tgk~v~~~~~h~g~ItsLafSPdg~lLaTGS~DGtI~IWDl~tg-~~i~t~~~--~~~~ItsIafSPDG~~Las---G 244 (1074)
+...++-. ..-+-+++.....--+++|+.|..-..|.+.-.... ..+..+.. ..-.+.++.|--||.-|.. -
T Consensus 1124 ~r~~~ligV-aFiD~~~yv~s~~~vknlIl~gDV~ksisfl~fqeep~rlsL~srd~~~l~v~s~EFLVdg~~L~flvsD 1202 (1366)
T KOG1896|consen 1124 DRDSELIGV-AFIDLPLYVHSMKVVKNLILAGDVMKSISFLGFQEEPYRLSLLSRDFEPLNVYSTEFLVDGSNLSFLVSD 1202 (1366)
T ss_pred ccCCcceee-EEeccceeEEehhhhhhheehhhhhhceEEEEEccCceEEEEeecCCchhhceeeeeEEcCCeeEEEEEc
Confidence 44443322 112333444444444677777776666666554421 12222221 2234678888877754432 3
Q ss_pred ECCcEEEEEecCCe
Q 001462 245 FDDNLKVYSWEPVI 258 (1074)
Q Consensus 245 sd~~I~Vwd~~s~~ 258 (1074)
.+++|.+|-+.+..
T Consensus 1203 a~rNi~vy~Y~Pe~ 1216 (1366)
T KOG1896|consen 1203 ADRNIHVYMYAPEN 1216 (1366)
T ss_pred CCCcEEEEEeCCCC
Confidence 56778998877643
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 1074 | ||||
| 2ymu_A | 577 | Structure Of A Highly Repetitive Propeller Structur | 7e-26 | ||
| 2ymu_A | 577 | Structure Of A Highly Repetitive Propeller Structur | 2e-17 | ||
| 3mxx_A | 315 | Crystal Structure Of Wdr5 Mutant (S62a) Length = 31 | 1e-22 | ||
| 3mxx_A | 315 | Crystal Structure Of Wdr5 Mutant (S62a) Length = 31 | 6e-22 | ||
| 2xl2_A | 334 | Wdr5 In Complex With An Rbbp5 Peptide Recruited To | 2e-22 | ||
| 2xl2_A | 334 | Wdr5 In Complex With An Rbbp5 Peptide Recruited To | 3e-21 | ||
| 2g9a_A | 311 | Structural Basis For The Specific Recognition Of Me | 2e-22 | ||
| 2g9a_A | 311 | Structural Basis For The Specific Recognition Of Me | 2e-21 | ||
| 2gnq_A | 336 | Structure Of Wdr5 Length = 336 | 2e-22 | ||
| 2gnq_A | 336 | Structure Of Wdr5 Length = 336 | 4e-21 | ||
| 2co0_A | 315 | Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs | 2e-22 | ||
| 2co0_A | 315 | Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs | 4e-21 | ||
| 2h9l_A | 329 | Wdr5delta23 Length = 329 | 2e-22 | ||
| 2h9l_A | 329 | Wdr5delta23 Length = 329 | 2e-21 | ||
| 2g99_A | 308 | Structural Basis For The Specific Recognition Of Me | 2e-22 | ||
| 2g99_A | 308 | Structural Basis For The Specific Recognition Of Me | 3e-21 | ||
| 2h13_A | 317 | Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length | 2e-22 | ||
| 2h13_A | 317 | Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length | 2e-21 | ||
| 3smr_A | 312 | Crystal Structure Of Human Wd Repeat Domain 5 With | 2e-22 | ||
| 3smr_A | 312 | Crystal Structure Of Human Wd Repeat Domain 5 With | 3e-21 | ||
| 3psl_A | 318 | Fine-Tuning The Stimulation Of Mll1 Methyltransfera | 2e-22 | ||
| 3psl_A | 318 | Fine-Tuning The Stimulation Of Mll1 Methyltransfera | 2e-21 | ||
| 3emh_A | 318 | Structural Basis Of Wdr5-Mll Interaction Length = 3 | 2e-22 | ||
| 3emh_A | 318 | Structural Basis Of Wdr5-Mll Interaction Length = 3 | 3e-21 | ||
| 2h68_A | 312 | Histone H3 Recognition And Presentation By The Wdr5 | 3e-22 | ||
| 2h68_A | 312 | Histone H3 Recognition And Presentation By The Wdr5 | 2e-21 | ||
| 2h9m_A | 313 | Wdr5 In Complex With Unmodified H3k4 Peptide Length | 3e-22 | ||
| 2h9m_A | 313 | Wdr5 In Complex With Unmodified H3k4 Peptide Length | 2e-21 | ||
| 4a7j_A | 318 | Symmetric Dimethylation Of H3 Arginine 2 Is A Novel | 3e-22 | ||
| 4a7j_A | 318 | Symmetric Dimethylation Of H3 Arginine 2 Is A Novel | 3e-21 | ||
| 2cnx_A | 315 | Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2. | 3e-22 | ||
| 2cnx_A | 315 | Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2. | 6e-21 | ||
| 2ovp_B | 445 | Structure Of The Skp1-Fbw7 Complex Length = 445 | 8e-22 | ||
| 2ovp_B | 445 | Structure Of The Skp1-Fbw7 Complex Length = 445 | 5e-06 | ||
| 3n0e_A | 315 | Crystal Structure Of Wdr5 Mutant (W330y) Length = 3 | 1e-21 | ||
| 3n0e_A | 315 | Crystal Structure Of Wdr5 Mutant (W330y) Length = 3 | 1e-21 | ||
| 3n0d_A | 315 | Crystal Structure Of Wdr5 Mutant (W330f) Length = 3 | 1e-21 | ||
| 1vyh_C | 410 | Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | 2e-21 | ||
| 1vyh_C | 410 | Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | 3e-08 | ||
| 3zey_7 | 318 | High-resolution Cryo-electron Microscopy Structure | 5e-21 | ||
| 1erj_A | 393 | Crystal Structure Of The C-Terminal Wd40 Domain Of | 4e-18 | ||
| 1erj_A | 393 | Crystal Structure Of The C-Terminal Wd40 Domain Of | 7e-16 | ||
| 1erj_A | 393 | Crystal Structure Of The C-Terminal Wd40 Domain Of | 5e-06 | ||
| 2yno_A | 310 | Yeast Betaprime Cop 1-304h6 Length = 310 | 8e-18 | ||
| 2yno_A | 310 | Yeast Betaprime Cop 1-304h6 Length = 310 | 3e-08 | ||
| 2ynn_A | 304 | Yeast Betaprime Cop 1-304 With Ktktn Motif Length = | 8e-18 | ||
| 2ynn_A | 304 | Yeast Betaprime Cop 1-304 With Ktktn Motif Length = | 3e-08 | ||
| 3dm0_A | 694 | Maltose Binding Protein Fusion With Rack1 From A. T | 8e-18 | ||
| 3dm0_A | 694 | Maltose Binding Protein Fusion With Rack1 From A. T | 2e-13 | ||
| 3ow8_A | 321 | Crystal Structure Of The Wd Repeat-Containing Prote | 1e-17 | ||
| 3mkq_A | 814 | Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco | 2e-17 | ||
| 2ynp_A | 604 | Yeast Betaprime Cop 1-604 With Ktktn Motif Length = | 3e-17 | ||
| 3izb_a | 319 | Localization Of The Small Subunit Ribosomal Protein | 4e-17 | ||
| 3rfh_A | 319 | Crystal Structure Of The Yeast Rack1 Dimer In Space | 4e-17 | ||
| 3rfg_A | 319 | Crystal Structure Of The Yeast Rack1 Dimer In Space | 5e-17 | ||
| 1trj_A | 314 | Homology Model Of Yeast Rack1 Protein Fitted Into 1 | 5e-17 | ||
| 3jyv_R | 313 | Structure Of The 40s Rrna And Proteins And PE TRNA | 6e-17 | ||
| 3frx_A | 319 | Crystal Structure Of The Yeast Orthologue Of Rack1, | 1e-16 | ||
| 3sfz_A | 1249 | Crystal Structure Of Full-Length Murine Apaf-1 Leng | 1e-16 | ||
| 3sfz_A | 1249 | Crystal Structure Of Full-Length Murine Apaf-1 Leng | 5e-08 | ||
| 3shf_A | 1256 | Crystal Structure Of The R265s Mutant Of Full-Lengt | 2e-16 | ||
| 3shf_A | 1256 | Crystal Structure Of The R265s Mutant Of Full-Lengt | 5e-08 | ||
| 4ggd_A | 431 | Structural Analysis Of Human Cdc20 Supports Multisi | 2e-16 | ||
| 4ggd_A | 431 | Structural Analysis Of Human Cdc20 Supports Multisi | 6e-04 | ||
| 4gga_A | 420 | Structural Analysis Of Human Cdc20 Supports Multi-S | 2e-16 | ||
| 4gga_A | 420 | Structural Analysis Of Human Cdc20 Supports Multi-S | 7e-04 | ||
| 2pbi_B | 354 | The Multifunctional Nature Of Gbeta5RGS9 REVEALED F | 3e-16 | ||
| 2pbi_B | 354 | The Multifunctional Nature Of Gbeta5RGS9 REVEALED F | 2e-04 | ||
| 1p22_A | 435 | Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex | 3e-16 | ||
| 1p22_A | 435 | Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex | 1e-04 | ||
| 4ggc_A | 318 | Structural Analysis Of Human Cdc20 Supports Multi-S | 3e-15 | ||
| 2zkq_a | 317 | Structure Of A Mammalian Ribosomal 40s Subunit With | 4e-15 | ||
| 2bcj_B | 340 | Crystal Structure Of G Protein-coupled Receptor Kin | 5e-15 | ||
| 2bcj_B | 340 | Crystal Structure Of G Protein-coupled Receptor Kin | 1e-12 | ||
| 1gg2_B | 340 | G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet | 5e-15 | ||
| 1gg2_B | 340 | G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet | 1e-12 | ||
| 1a0r_B | 340 | Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA- | 5e-15 | ||
| 1a0r_B | 340 | Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA- | 1e-12 | ||
| 1got_B | 340 | Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer | 5e-15 | ||
| 1got_B | 340 | Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer | 1e-12 | ||
| 4aow_A | 340 | Crystal Structure Of The Human Rack1 Protein At A R | 5e-15 | ||
| 3sn6_B | 351 | Crystal Structure Of The Beta2 Adrenergic Receptor- | 6e-15 | ||
| 3sn6_B | 351 | Crystal Structure Of The Beta2 Adrenergic Receptor- | 1e-12 | ||
| 3iza_B | 1263 | Structure Of An Apoptosome-Procaspase-9 Card Comple | 5e-14 | ||
| 3iza_B | 1263 | Structure Of An Apoptosome-Procaspase-9 Card Comple | 3e-04 | ||
| 1gxr_A | 337 | Wd40 Region Of Human Groucho/tle1 Length = 337 | 6e-14 | ||
| 2xzm_R | 343 | Crystal Structure Of The Eukaryotic 40s Ribosomal S | 4e-13 | ||
| 2xzm_R | 343 | Crystal Structure Of The Eukaryotic 40s Ribosomal S | 3e-07 | ||
| 2xyi_A | 430 | Crystal Structure Of Nurf55 In Complex With A H4 Pe | 2e-12 | ||
| 3c99_A | 432 | Structural Basis Of Histone H4 Recognition By P55 L | 2e-12 | ||
| 3mks_B | 464 | Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH | 3e-12 | ||
| 3mks_B | 464 | Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH | 7e-10 | ||
| 1nex_B | 464 | Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp | 3e-12 | ||
| 1nex_B | 464 | Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp | 4e-09 | ||
| 2yba_A | 422 | Crystal Structure Of Nurf55 In Complex With Histone | 3e-12 | ||
| 3gfc_A | 425 | Crystal Structure Of Histone-Binding Protein Rbbp4 | 5e-12 | ||
| 4aez_A | 401 | Crystal Structure Of Mitotic Checkpoint Complex Len | 6e-11 | ||
| 3cfv_B | 414 | Structural Basis Of The Interaction Of Rbap46RBAP48 | 6e-11 | ||
| 3cfs_B | 414 | Structural Basis Of The Interaction Of Rbap46RBAP48 | 6e-11 | ||
| 3fm0_A | 345 | Crystal Structure Of Wd40 Protein Ciao1 Length = 34 | 2e-10 | ||
| 2hes_X | 330 | Cytosolic Iron-sulphur Assembly Protein- 1 Length = | 3e-10 | ||
| 3iz6_a | 380 | Localization Of The Small Subunit Ribosomal Protein | 3e-10 | ||
| 3odt_A | 313 | Crystal Structure Of Wd40 Beta Propeller Domain Of | 6e-09 | ||
| 3acp_A | 417 | Crystal Structure Of Yeast Rpn14, A Chaperone Of Th | 7e-08 | ||
| 3vl1_A | 420 | Crystal Structure Of Yeast Rpn14 Length = 420 | 8e-08 | ||
| 4a11_B | 408 | Structure Of The Hsddb1-Hscsa Complex Length = 408 | 3e-07 | ||
| 4e54_B | 435 | Damaged Dna Induced Uv-Damaged Dna-Binding Protein | 3e-07 | ||
| 3ei4_B | 436 | Structure Of The Hsddb1-Hsddb2 Complex Length = 436 | 3e-07 | ||
| 4e5z_B | 436 | Damaged Dna Induced Uv-Damaged Dna-Binding Protein | 4e-07 | ||
| 2pm9_A | 416 | Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT O | 4e-07 | ||
| 2pm9_A | 416 | Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT O | 2e-05 | ||
| 3zwl_B | 369 | Structure Of Eukaryotic Translation Initiation Fact | 5e-07 | ||
| 1nr0_A | 611 | Two Seven-Bladed Beta-Propeller Domains Revealed By | 1e-06 | ||
| 2aq5_A | 402 | Crystal Structure Of Murine Coronin-1 Length = 402 | 4e-06 | ||
| 2b4e_A | 402 | Crystal Structure Of Murine Coronin-1: Monoclinic F | 5e-06 | ||
| 3mmy_A | 368 | Structural And Functional Analysis Of The Interacti | 4e-05 | ||
| 4i79_A | 399 | Crystal Structure Of Human Nup43 Length = 399 | 5e-05 |
| >pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577 | Back alignment and structure |
|
| >pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577 | Back alignment and structure |
|
| >pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315 | Back alignment and structure |
|
| >pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315 | Back alignment and structure |
|
| >pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334 | Back alignment and structure |
|
| >pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334 | Back alignment and structure |
|
| >pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311 | Back alignment and structure |
|
| >pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311 | Back alignment and structure |
|
| >pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336 | Back alignment and structure |
|
| >pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336 | Back alignment and structure |
|
| >pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2H9L|A Chain A, Wdr5delta23 Length = 329 | Back alignment and structure |
|
| >pdb|2H9L|A Chain A, Wdr5delta23 Length = 329 | Back alignment and structure |
|
| >pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308 | Back alignment and structure |
|
| >pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308 | Back alignment and structure |
|
| >pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317 | Back alignment and structure |
|
| >pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317 | Back alignment and structure |
|
| >pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312 | Back alignment and structure |
|
| >pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312 | Back alignment and structure |
|
| >pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318 | Back alignment and structure |
|
| >pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318 | Back alignment and structure |
|
| >pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318 | Back alignment and structure |
|
| >pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318 | Back alignment and structure |
|
| >pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312 | Back alignment and structure |
|
| >pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312 | Back alignment and structure |
|
| >pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313 | Back alignment and structure |
|
| >pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313 | Back alignment and structure |
|
| >pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318 | Back alignment and structure |
|
| >pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318 | Back alignment and structure |
|
| >pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445 | Back alignment and structure |
|
| >pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445 | Back alignment and structure |
|
| >pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315 | Back alignment and structure |
|
| >pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315 | Back alignment and structure |
|
| >pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315 | Back alignment and structure |
|
| >pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | Back alignment and structure |
|
| >pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | Back alignment and structure |
|
| >pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318 | Back alignment and structure |
|
| >pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393 | Back alignment and structure |
|
| >pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393 | Back alignment and structure |
|
| >pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393 | Back alignment and structure |
|
| >pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310 | Back alignment and structure |
|
| >pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310 | Back alignment and structure |
|
| >pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304 | Back alignment and structure |
|
| >pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304 | Back alignment and structure |
|
| >pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694 | Back alignment and structure |
|
| >pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694 | Back alignment and structure |
|
| >pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321 | Back alignment and structure |
|
| >pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814 | Back alignment and structure |
|
| >pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604 | Back alignment and structure |
|
| >pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319 | Back alignment and structure |
|
| >pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319 | Back alignment and structure |
|
| >pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319 | Back alignment and structure |
|
| >pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314 | Back alignment and structure |
|
| >pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313 | Back alignment and structure |
|
| >pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319 | Back alignment and structure |
|
| >pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249 | Back alignment and structure |
|
| >pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249 | Back alignment and structure |
|
| >pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256 | Back alignment and structure |
|
| >pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256 | Back alignment and structure |
|
| >pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite Degron Recognition By ApcC. Length = 431 | Back alignment and structure |
|
| >pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite Degron Recognition By ApcC. Length = 431 | Back alignment and structure |
|
| >pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 420 | Back alignment and structure |
|
| >pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 420 | Back alignment and structure |
|
| >pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354 | Back alignment and structure |
|
| >pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354 | Back alignment and structure |
|
| >pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435 | Back alignment and structure |
|
| >pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435 | Back alignment and structure |
|
| >pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 318 | Back alignment and structure |
|
| >pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317 | Back alignment and structure |
|
| >pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340 | Back alignment and structure |
|
| >pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340 | Back alignment and structure |
|
| >pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340 | Back alignment and structure |
|
| >pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340 | Back alignment and structure |
|
| >pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340 | Back alignment and structure |
|
| >pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340 | Back alignment and structure |
|
| >pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340 | Back alignment and structure |
|
| >pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340 | Back alignment and structure |
|
| >pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340 | Back alignment and structure |
|
| >pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351 | Back alignment and structure |
|
| >pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351 | Back alignment and structure |
|
| >pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1 Length = 337 | Back alignment and structure |
|
| >pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343 | Back alignment and structure |
|
| >pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343 | Back alignment and structure |
|
| >pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide Length = 430 | Back alignment and structure |
|
| >pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55 Length = 432 | Back alignment and structure |
|
| >pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464 | Back alignment and structure |
|
| >pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464 | Back alignment and structure |
|
| >pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464 | Back alignment and structure |
|
| >pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464 | Back alignment and structure |
|
| >pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3 Length = 422 | Back alignment and structure |
|
| >pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4 Length = 425 | Back alignment and structure |
|
| >pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex Length = 401 | Back alignment and structure |
|
| >pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414 | Back alignment and structure |
|
| >pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414 | Back alignment and structure |
|
| >pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345 | Back alignment and structure |
|
| >pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1 Length = 330 | Back alignment and structure |
|
| >pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380 | Back alignment and structure |
|
| >pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1 Length = 313 | Back alignment and structure |
|
| >pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s Reg Particle Of The Proteasome Length = 417 | Back alignment and structure |
|
| >pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14 Length = 420 | Back alignment and structure |
|
| >pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex Length = 408 | Back alignment and structure |
|
| >pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein (Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna Repair Length = 435 | Back alignment and structure |
|
| >pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex Length = 436 | Back alignment and structure |
|
| >pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein (Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna Repair Length = 436 | Back alignment and structure |
|
| >pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE Copii Vesicular Coat Length = 416 | Back alignment and structure |
|
| >pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE Copii Vesicular Coat Length = 416 | Back alignment and structure |
|
| >pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor Eif3i Complex With Eif3b C-Terminus (655-700) Length = 369 | Back alignment and structure |
|
| >pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The Structure Of A C. Elegans Homologue Of Yeast Actin Interacting Protein 1 (Aip1). Length = 611 | Back alignment and structure |
|
| >pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1 Length = 402 | Back alignment and structure |
|
| >pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form Length = 402 | Back alignment and structure |
|
| >pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction Between The Nucleoporin Nup98 And The Mrna Export Factor Rae1 Length = 368 | Back alignment and structure |
|
| >pdb|4I79|A Chain A, Crystal Structure Of Human Nup43 Length = 399 | Back alignment and structure |
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1074 | ||||
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 8e-37 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 2e-36 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 1e-25 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 1e-34 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 2e-28 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 3e-28 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 3e-19 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 3e-29 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 1e-25 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 7e-23 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 2e-19 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 2e-27 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 1e-26 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 3e-21 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 6e-09 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 9e-23 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 3e-22 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 8e-18 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 2e-15 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 3e-21 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 1e-17 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 3e-12 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 7e-12 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 1e-11 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 1e-09 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 2e-05 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 2e-19 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 2e-17 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 1e-15 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 3e-10 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 9e-09 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 6e-18 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 1e-14 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 2e-14 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 3e-17 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 3e-17 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 1e-14 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 2e-09 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 2e-07 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 5e-17 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 2e-13 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 3e-13 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 7e-12 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 1e-11 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 3e-08 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 0.003 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 2e-16 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 2e-15 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 6e-14 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 9e-14 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 9e-12 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 3e-15 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 1e-13 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 1e-12 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 5e-12 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 9e-11 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 1e-09 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 3e-05 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 4e-04 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 4e-15 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 3e-13 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 2e-12 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 2e-11 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 2e-11 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 5e-09 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 3e-06 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 0.002 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 2e-14 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 8e-13 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 2e-11 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 1e-08 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 1e-07 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 2e-14 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 2e-13 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 2e-11 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 8e-10 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 3e-09 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 1e-08 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 4e-08 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 1e-13 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 3e-08 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 0.004 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 2e-13 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 6e-13 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 6e-12 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 1e-11 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 9e-10 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 3e-13 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 2e-11 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 2e-10 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 2e-09 | |
| d1mdah_ | 368 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 6e-10 | |
| d1mdah_ | 368 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 5e-09 | |
| d1mdah_ | 368 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 2e-06 | |
| d1qksa2 | 432 | b.70.2.1 (A:136-567) C-terminal (heme d1) domain o | 7e-10 | |
| d1qksa2 | 432 | b.70.2.1 (A:136-567) C-terminal (heme d1) domain o | 8e-08 | |
| d1qksa2 | 432 | b.70.2.1 (A:136-567) C-terminal (heme d1) domain o | 3e-07 | |
| d1hzua2 | 426 | b.70.2.1 (A:118-543) C-terminal (heme d1) domain o | 7e-10 | |
| d1hzua2 | 426 | b.70.2.1 (A:118-543) C-terminal (heme d1) domain o | 7e-07 | |
| d1hzua2 | 426 | b.70.2.1 (A:118-543) C-terminal (heme d1) domain o | 3e-04 | |
| d1hzua2 | 426 | b.70.2.1 (A:118-543) C-terminal (heme d1) domain o | 3e-04 | |
| d1l0qa2 | 301 | b.69.2.3 (A:1-301) Surface layer protein {Archaeon | 4e-08 | |
| d1l0qa2 | 301 | b.69.2.3 (A:1-301) Surface layer protein {Archaeon | 1e-07 | |
| d1l0qa2 | 301 | b.69.2.3 (A:1-301) Surface layer protein {Archaeon | 1e-07 | |
| d1l0qa2 | 301 | b.69.2.3 (A:1-301) Surface layer protein {Archaeon | 7e-07 | |
| d1l0qa2 | 301 | b.69.2.3 (A:1-301) Surface layer protein {Archaeon | 3e-06 | |
| d1qnia2 | 441 | b.69.3.1 (A:10-450) Nitrous oxide reductase, N-ter | 3e-06 | |
| d1qnia2 | 441 | b.69.3.1 (A:10-450) Nitrous oxide reductase, N-ter | 2e-05 | |
| d1qnia2 | 441 | b.69.3.1 (A:10-450) Nitrous oxide reductase, N-ter | 4e-05 | |
| d1ri6a_ | 333 | b.69.11.1 (A:) Putative isomerase YbhE {Escherichi | 1e-05 | |
| d1ri6a_ | 333 | b.69.11.1 (A:) Putative isomerase YbhE {Escherichi | 5e-05 | |
| d1ri6a_ | 333 | b.69.11.1 (A:) Putative isomerase YbhE {Escherichi | 1e-04 | |
| d1rwia_ | 260 | b.68.9.1 (A:) Serine/threonine-protein kinase PknD | 0.001 | |
| d1pjxa_ | 314 | b.68.6.1 (A:) Diisopropylfluorophosphatase (phosph | 0.003 | |
| d2hqsa1 | 269 | b.68.4.1 (A:163-431) TolB, C-terminal domain {Esch | 0.003 | |
| d2p4oa1 | 302 | b.68.6.3 (A:4-305) Hypothetical protein All0351 ho | 0.004 |
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 139 bits (350), Expect = 8e-37
Identities = 42/204 (20%), Positives = 83/204 (40%), Gaps = 20/204 (9%)
Query: 29 RFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLE 88
+++ D+ + +W + + + G V V + L+ + ++ +++W +
Sbjct: 114 DHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVA 173
Query: 89 ESKMVRTLTGHKSNCTAVEFH--------------------PFGEFFASGCMDTNLKIWD 128
+ L H+ + + G F SG D +K+WD
Sbjct: 174 TKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWD 233
Query: 129 IRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIR 188
+ C+ T GH + + F G++++S D ++VWD + + HE +
Sbjct: 234 VSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVT 293
Query: 189 SIDFHPLEFLLATGSADRTVKFWD 212
S+DFH + TGS D+TVK W+
Sbjct: 294 SLDFHKTAPYVVTGSVDQTVKVWE 317
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 138 bits (347), Expect = 2e-36
Identities = 53/314 (16%), Positives = 108/314 (34%), Gaps = 64/314 (20%)
Query: 4 RGYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDS 63
R + H + V + +++ +D + +W +L G + V
Sbjct: 6 RPPEKYALSGHRSPVTRVIFHPVF-SVMVSASEDATIKVWDYETGDFERTLKGHTDSVQD 64
Query: 64 VAFDSAEV------------------------------------------LVLAGASTGV 81
++FD + +++ +
Sbjct: 65 ISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKT 124
Query: 82 IKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGH 141
IK+W+++ V+T TGH+ V + G AS D +++W + K C + H
Sbjct: 125 IKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREH 184
Query: 142 TRGINTIRFT--------------------PDGRWVVSGGFDNVVKVWDLTAGKLLHDFK 181
+ I + G +++SG D +K+WD++ G L
Sbjct: 185 RHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLV 244
Query: 182 FHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTL 241
H+ +R + FH + + + D+T++ WD + + + V ++ FH +
Sbjct: 245 GHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYV 304
Query: 242 FSGFDDNLKVYSWE 255
+G D V WE
Sbjct: 305 VTGSVDQ-TVKVWE 317
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 106 bits (265), Expect = 1e-25
Identities = 70/307 (22%), Positives = 123/307 (40%), Gaps = 27/307 (8%)
Query: 42 LWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKS 101
W I +P +L G SPV V F ++++ + IK+WD E RTL GH
Sbjct: 2 EW-IPRPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTD 60
Query: 102 NCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGG 161
+ + F G+ AS D +K+WD + CI T GH ++++ P+G +VS
Sbjct: 61 SVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSAS 120
Query: 162 FDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGS 221
D +K+W++ G + F H +R + + L+A+ S D+TV+ W + T E
Sbjct: 121 RDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAE 180
Query: 222 TRP--------------------EVTGVHAITFHPDGRTLFSGFDDN-LKVYSWEPVICH 260
R E TG G L SG D +K++ +C
Sbjct: 181 LREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCL 240
Query: 261 DSVDMGWSTLGDLCIN-DGKLLGCSFYRNSVGIWVADVSHVEPYGVGAPEPDQSICTEVK 319
++ + + + + GK + ++ +W D + + + T +
Sbjct: 241 MTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVW--DYKNKRC--MKTLNAHEHFVTSLD 296
Query: 320 FNPPGSH 326
F+ +
Sbjct: 297 FHKTAPY 303
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 133 bits (335), Expect = 1e-34
Identities = 39/143 (27%), Positives = 66/143 (46%), Gaps = 2/143 (1%)
Query: 72 LVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKI--WDI 129
L ++GA KLWD+ E +T TGH+S+ A+ F P G FA+G D ++
Sbjct: 198 LFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRA 257
Query: 130 RKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRS 189
++ +++ GI ++ F+ GR +++G D VWD H+ +
Sbjct: 258 DQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSC 317
Query: 190 IDFHPLEFLLATGSADRTVKFWD 212
+ +ATGS D +K W+
Sbjct: 318 LGVTDDGMAVATGSWDSFLKIWN 340
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 115 bits (287), Expect = 2e-28
Identities = 34/145 (23%), Positives = 61/145 (42%), Gaps = 2/145 (1%)
Query: 28 CRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDL 87
R ++G D LW + + + G S ++++ F G+ +L+DL
Sbjct: 196 TRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDL 255
Query: 88 EESKMVRTLTGHKSNC--TAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGI 145
+ + T + C T+V F G +G D N +WD K GH +
Sbjct: 256 RADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRV 315
Query: 146 NTIRFTPDGRWVVSGGFDNVVKVWD 170
+ + T DG V +G +D+ +K+W+
Sbjct: 316 SCLGVTDDGMAVATGSWDSFLKIWN 340
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 114 bits (286), Expect = 3e-28
Identities = 63/292 (21%), Positives = 114/292 (39%), Gaps = 8/292 (2%)
Query: 9 QEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDS 68
+ H A + + G R L++ D K+ +W + ++ SS V + A+
Sbjct: 49 RTLRGHLAKIYAMHWGTD-SRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAP 107
Query: 69 AEVLVLAGASTGVIKLWDLEESKMVRTLTGHKS---NCTAVEFHPFGEFFASGCMDTNLK 125
+ V G + +++L+ + ++ + + + DT
Sbjct: 108 SGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCA 167
Query: 126 IWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEG 185
+WDI T+ GHT + ++ PD R VSG D K+WD+ G F HE
Sbjct: 168 LWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHES 227
Query: 186 HIRSIDFHPLEFLLATGSADRTVKF--WDLETFELIGSTRPEVTGVHAITFHPDGRTLFS 243
I +I F P ATGS D T + + + S + G+ +++F GR L +
Sbjct: 228 DINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLA 287
Query: 244 GFDDN-LKVYSWEPVICHDSVDMGWSTLGDLCIN-DGKLLGCSFYRNSVGIW 293
G+DD V+ + + + L + DG + + + + IW
Sbjct: 288 GYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 87.9 bits (216), Expect = 3e-19
Identities = 46/285 (16%), Positives = 85/285 (29%), Gaps = 53/285 (18%)
Query: 91 KMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRF 150
+ RTL GH + A+ + S D L IWD +H + + T +
Sbjct: 46 RTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAY 105
Query: 151 TPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGH------------------------ 186
P G +V GG DN+ +++L +
Sbjct: 106 APSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTT 165
Query: 187 ---------------------IRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPE 225
+ S+ P L +G+ D + K WD+ +
Sbjct: 166 CALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGH 225
Query: 226 VTGVHAITFHPDGRTLFSGFDDN-LKVYSWEPVICHDSVDMGWSTLGDLCI---NDGKLL 281
+ ++AI F P+G +G DD +++ + G + G+LL
Sbjct: 226 ESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLL 285
Query: 282 GCSFYRNSVGIWVADVSHVEPYGVGAPEPDQSICTEVKFNPPGSH 326
+ + +W D + G + + + G
Sbjct: 286 LAGYDDFNCNVW--DALKADR--AGVLAGHDNRVSCLGVTDDGMA 326
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 117 bits (294), Expect = 3e-29
Identities = 63/250 (25%), Positives = 106/250 (42%), Gaps = 15/250 (6%)
Query: 14 HSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLV 73
+ + + + +++G D + +W I L L G + V V +D V+
Sbjct: 93 LYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVS 152
Query: 74 LAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKG 133
GA ++K+WD E + TL GH + +++F G SG +DT++++WD+
Sbjct: 153 --GAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFD--GIHVVSGSLDTSIRVWDVETGN 208
Query: 134 CIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFH 193
CIHT GH + + +VSG D+ VK+WD+ G+ L + H ++
Sbjct: 209 CIHTLTGHQSLTSGMEL--KDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCL 266
Query: 194 PL-EFLLATGSADRTVKFWDLETFELIGSTRPEVTG-----VHAITFHPDGRTLFSGFDD 247
+ + T S D TVK WDL+T E I + +G V I G +
Sbjct: 267 QFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRN 326
Query: 248 N---LKVYSW 254
K+
Sbjct: 327 GTEETKLLVL 336
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 107 bits (267), Expect = 1e-25
Identities = 53/207 (25%), Positives = 96/207 (46%), Gaps = 14/207 (6%)
Query: 17 NVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAG 76
+V + + R +++G D V +W T L +L G ++ V S+ FD + V++G
Sbjct: 136 HVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDG--IHVVSG 193
Query: 77 ASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIH 136
+ I++WD+E + TLTGH+S + +E SG D+ +KIWDI+ C+
Sbjct: 194 SLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD--NILVSGNADSTVKIWDIKTGQCLQ 251
Query: 137 TYKGHTRGINTIRFTP-DGRWVVSGGFDNVVKVWDLTAGKLLHDFKF-----HEGHIRSI 190
T +G + + + + +V++ D VK+WDL G+ + + G + I
Sbjct: 252 TLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRI 311
Query: 191 DFHPLEFLLATGSADRT----VKFWDL 213
+ + A GS + T + D
Sbjct: 312 RASNTKLVCAVGSRNGTEETKLLVLDF 338
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 99.1 bits (245), Expect = 7e-23
Identities = 57/326 (17%), Positives = 109/326 (33%), Gaps = 49/326 (15%)
Query: 43 WAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSN 102
W G+ + L G V + +++G+ +K+W K +RTL GH
Sbjct: 1 WRRGELKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGG 59
Query: 103 CTAVEFHP--------------------------------------FGEFFASGCMDTNL 124
+ + + SG D L
Sbjct: 60 VWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATL 119
Query: 125 KIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHE 184
++WDI C+H GH + +++ R VVSG +D +VKVWD LH + H
Sbjct: 120 RVWDIETGQCLHVLMGHVAAVRCVQYDG--RRVVSGAYDFMVKVWDPETETCLHTLQGHT 177
Query: 185 GHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSG 244
+ S+ F + + +GS D +++ WD+ET I + + + + L SG
Sbjct: 178 NRVYSLQFDGI--HVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDN--ILVSG 233
Query: 245 FDDN-LKVYS--WEPVICHDSVDMGWSTLGDLCINDGKLLGCSFYRNSVGIW-VADVSHV 300
D+ +K++ + + + + S +V +W + +
Sbjct: 234 NADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFI 293
Query: 301 EPYGVGAPEPDQSICTEVKFNPPGSH 326
+ ++ +
Sbjct: 294 RNLVTLESGGSGGVVWRIRASNTKLV 319
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 88.7 bits (218), Expect = 2e-19
Identities = 31/174 (17%), Positives = 65/174 (37%), Gaps = 15/174 (8%)
Query: 8 LQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFD 67
L H+ V + +++G D + +W + + +L G S +
Sbjct: 170 LHTLQGHTNRVYSLQFDGI---HVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK 226
Query: 68 SAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPF-GEFFASGCMDTNLKI 126
++++G + +K+WD++ + ++TL G + +AV F F + D +K+
Sbjct: 227 DN--ILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKL 284
Query: 127 WDIRKKGCIHTYK-----GHTRGINTIRFTPDGRWVVSGGFDN----VVKVWDL 171
WD++ I G + IR + G + + V D
Sbjct: 285 WDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDF 338
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 113 bits (282), Expect = 2e-27
Identities = 48/212 (22%), Positives = 85/212 (40%), Gaps = 25/212 (11%)
Query: 28 CRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDL 87
L++G D+ V +W + ++L + AG+ +++WD
Sbjct: 175 GDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDS 234
Query: 88 EESKMVRTL-------TGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKG------- 133
E +V L TGHK + +V F G+ SG +D ++K+W+++
Sbjct: 235 ETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKT 294
Query: 134 -----CIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIR 188
C TY GH + ++ T + +++SG D V WD +G L + H +
Sbjct: 295 PNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVI 354
Query: 189 SID------FHPLEFLLATGSADRTVKFWDLE 214
S+ P + ATGS D + W +
Sbjct: 355 SVAVANGSSLGPEYNVFATGSGDCKARIWKYK 386
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 111 bits (276), Expect = 1e-26
Identities = 53/280 (18%), Positives = 111/280 (39%), Gaps = 27/280 (9%)
Query: 4 RGYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDS 63
+ + + +FL TG +D+ + +W I +M L G + S
Sbjct: 110 ENLNTSSSPSSDLYIRSVCFSPD-GKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYS 168
Query: 64 VAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTN 123
+ + + +++G+ +++WDL + TL+ T G++ A+G +D
Sbjct: 169 LDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRA 228
Query: 124 LKIWDIRKKGCIHTYK-------GHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKL 176
+++WD + GH + ++ FT DG+ VVSG D VK+W+L
Sbjct: 229 VRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANN 288
Query: 177 ------------LHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRP 224
+ H+ + S+ + + +GS DR V FWD ++ + +
Sbjct: 289 KSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQG 348
Query: 225 EVTGVHAI------TFHPDGRTLFSGFDDN-LKVYSWEPV 257
V ++ + P+ +G D +++ ++ +
Sbjct: 349 HRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKI 388
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 94.9 bits (234), Expect = 3e-21
Identities = 66/331 (19%), Positives = 114/331 (34%), Gaps = 44/331 (13%)
Query: 6 YKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKP----TALMSLCGLSSPV 61
Y + + + + ++ + + L+ P L +S V
Sbjct: 6 YNQRANHSKPIPPFLLDLDSQSVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTSVV 65
Query: 62 DSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTG------------------HKSNC 103
V F S + LA +++ + + +V L+
Sbjct: 66 CCVKF-SNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYI 124
Query: 104 TAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFD 163
+V F P G+F A+G D ++IWDI + + +GH + I ++ + P G +VSG D
Sbjct: 125 RSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGD 184
Query: 164 NVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTR 223
V++WDL G+ +G +A GS DR V+ WD ET L+
Sbjct: 185 RTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLD 244
Query: 224 PEVT-------GVHAITFHPDGRTLFSGFDDN-----------LKVYSWEPVICHDSVDM 265
E V+++ F DG+++ SG D K S P V
Sbjct: 245 SENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTY 304
Query: 266 GWSTLGDLCI---NDGKLLGCSFYRNSVGIW 293
L + + + + V W
Sbjct: 305 IGHKDFVLSVATTQNDEYILSGSKDRGVLFW 335
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 57.1 bits (136), Expect = 6e-09
Identities = 21/204 (10%), Positives = 55/204 (26%), Gaps = 30/204 (14%)
Query: 100 KSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCI----HTYKGHTRGINTIRFTPDGR 155
++ + + +++ I H HT + ++F+ DG
Sbjct: 17 PPFLLDLDSQSVPDAL-KKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGE 75
Query: 156 WVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLET 215
++ +G + +V+ ++ G L+ + + ++
Sbjct: 76 YLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLY----------- 123
Query: 216 FELIGSTRPEVTGVHAITFHPDGRTLFSGFDDNLKVYSWEPVICHDSVDMGWSTLGDLCI 275
+ ++ F PDG+ L +G +D L + G
Sbjct: 124 -------------IRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLD 170
Query: 276 NDGKLLGCSFYRNSVGIWVADVSH 299
+ + D+
Sbjct: 171 YFPSGDKLVSGSGDRTVRIWDLRT 194
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 97.6 bits (241), Expect = 9e-23
Identities = 42/142 (29%), Positives = 63/142 (44%), Gaps = 15/142 (10%)
Query: 80 GVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYK 139
IK+W+ + VRTL GHK +++ SG D +++WDI C+ +
Sbjct: 158 RTIKVWNTSTCEFVRTLNGHKRGIACLQYRD--RLVVSGSSDNTIRLWDIECGACLRVLE 215
Query: 140 GHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAG---------KLLHDFKFHEGHIRSI 190
GH + IRF + +VSG +D +KVWDL A L H G + +
Sbjct: 216 GHEELVRCIRFDN--KRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRL 273
Query: 191 DFHPLEFLLATGSADRTVKFWD 212
F F + + S D T+ WD
Sbjct: 274 QFDE--FQIVSSSHDDTILIWD 293
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 96.1 bits (237), Expect = 3e-22
Identities = 54/298 (18%), Positives = 99/298 (33%), Gaps = 60/298 (20%)
Query: 7 KLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAF 66
++ S V C+ + +++G D + +W L G + V + +
Sbjct: 7 RIHCRSETSKGVYCLQYDD---QKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY 63
Query: 67 DSAEVLVLAGA--------------------------------------STGVIKLWD-- 86
D ++ + I +WD
Sbjct: 64 DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMA 123
Query: 87 -LEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGI 145
+ + R L GH++ V+F ASG D +K+W+ + T GH RGI
Sbjct: 124 SPTDITLRRVLVGHRAAVNVVDFDDKYIVSASG--DRTIKVWNTSTCEFVRTLNGHKRGI 181
Query: 146 NTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSAD 205
+++ R VVSG DN +++WD+ G L + H + +G+ D
Sbjct: 182 ACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGH--EELVRCIRFDNKRIVSGAYD 237
Query: 206 RTVKFWDLETFELIGSTRPEVTGVHAITFH--------PDGRTLFSGFDDNLKVYSWE 255
+K WDL + + + + H D + S D+ + W+
Sbjct: 238 GKIKVWDLVAALDPRAPAGTLC-LRTLVEHSGRVFRLQFDEFQIVSSSHDD-TILIWD 293
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 83.0 bits (203), Expect = 8e-18
Identities = 51/270 (18%), Positives = 90/270 (33%), Gaps = 51/270 (18%)
Query: 58 SSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFAS 117
S V + +D +++G IK+WD + R LTGH + +++ S
Sbjct: 15 SKGVYCLQYDDQ--KIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGS 72
Query: 118 GCMDT--------------------------------------NLKIWDIRKKGCIHTY- 138
++ +WD+ I
Sbjct: 73 SDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRR 132
Query: 139 --KGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLE 196
GH +N + F SG D +KVW+ + + + H+ I + +
Sbjct: 133 VLVGHRAAVNVVDFDDKYIVSASG--DRTIKVWNTSTCEFVRTLNGHKRGIACLQYRD-- 188
Query: 197 FLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGFDDNLKVYSWEP 256
L+ +GS+D T++ WD+E + V D + + SG D K+ W+
Sbjct: 189 RLVVSGSSDNTIRLWDIECGACLRVLEGHEELVR--CIRFDNKRIVSGAYDG-KIKVWDL 245
Query: 257 VICHDSVDM-GWSTLGDLCINDGKLLGCSF 285
V D G L L + G++ F
Sbjct: 246 VAALDPRAPAGTLCLRTLVEHSGRVFRLQF 275
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 76.0 bits (185), Expect = 2e-15
Identities = 36/243 (14%), Positives = 81/243 (33%), Gaps = 45/243 (18%)
Query: 91 KMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRF 150
+ + + +++ + SG D +KIWD C GHT + +++
Sbjct: 6 QRIHCRSETSKGVYCLQYD--DQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY 63
Query: 151 --------------------------------------TPDGRWVVSGGFDNVVKVWDLT 172
+ +V+ D + VWD+
Sbjct: 64 DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMA 123
Query: 173 AGKLLHDFKFHEGHIRS-IDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHA 231
+ + + GH + + + + S DRT+K W+ T E + + G+
Sbjct: 124 SPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIA- 182
Query: 232 ITFHPDGRTLFSGFDDN-LKVYSWEPVICHDSVDMGWSTLGDLCINDGKLLGCSFYRNSV 290
R + SG DN ++++ E C ++ + + ++ +++ Y +
Sbjct: 183 -CLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIV-SGAYDGKI 240
Query: 291 GIW 293
+W
Sbjct: 241 KVW 243
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 94.5 bits (233), Expect = 3e-21
Identities = 26/116 (22%), Positives = 51/116 (43%), Gaps = 2/116 (1%)
Query: 98 GHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWV 157
S ++ + P GE+ A G +N+++ + K + H + +++F G+W
Sbjct: 222 DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHL-HESCVLSLKFAYCGKWF 280
Query: 158 VSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDL 213
VS G DN++ W G + K + S D + + TGS D+ +++
Sbjct: 281 VSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 83.3 bits (204), Expect = 1e-17
Identities = 41/300 (13%), Positives = 78/300 (26%), Gaps = 53/300 (17%)
Query: 4 RGYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAI-----GKPTALMSLCGLS 58
R + + H V ++I R + TGG V +W I P + +
Sbjct: 40 RHARQINTLNHGEVVCAVTISNPT-RHVYTGGKG-CVKVWDISHPGNKSPVSQLDCLNRD 97
Query: 59 SPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASG 118
+ + S ++ G + +WDL S +
Sbjct: 98 NYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCF 157
Query: 119 CM-------------------------------------------DTNLKIWDIRKKGCI 135
N ++G
Sbjct: 158 SCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQ 217
Query: 136 HTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPL 195
T I ++ + P G W+ G + V+V + + HE + S+ F
Sbjct: 218 LQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDK-YQLHLHESCVLSLKFAYC 276
Query: 196 EFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGFDDNLKVYSWE 255
+ D + W I ++ + V + D + + +G D K +E
Sbjct: 277 GKWFVSTGKDNLLNAWRTPYGASIFQSKES-SSVLSCDISVDDKYIVTGSGDK-KATVYE 334
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 67.1 bits (162), Expect = 3e-12
Identities = 22/118 (18%), Positives = 39/118 (33%), Gaps = 8/118 (6%)
Query: 58 SSPVDSVAFD-SAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFA 116
S P S ++ + +I ++ + TL H AV
Sbjct: 9 SKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTL-NHGEVVCAVTISNPTRHVY 67
Query: 117 SGCMDTNLKIWDIRKKGCIHT-----YKGHTRGINTIRFTPDGRWVVSGGFDNVVKVW 169
+G +K+WDI G I + + PDG ++ GG + + +W
Sbjct: 68 TGGKGC-VKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIW 124
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 65.6 bits (158), Expect = 7e-12
Identities = 32/211 (15%), Positives = 53/211 (25%), Gaps = 8/211 (3%)
Query: 121 DTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGK----- 175
D + R I+T H + + + R V +GG VKVWD++
Sbjct: 31 DALIGPGIPRHARQINTL-NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPV 88
Query: 176 LLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFH 235
D + +IRS P L G T+ WDL +
Sbjct: 89 SQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALA 148
Query: 236 PDGRTLFSGFDDNLKVYSWEPVICHDSVDMGWSTLGDLCINDGKLLGCSFYRNSVGIWVA 295
+ + + + V D G + + V
Sbjct: 149 ISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTV- 207
Query: 296 DVSHVEPYGVGAPEPDQSICTEVKFNPPGSH 326
+ S + + P G
Sbjct: 208 RSWDLREGRQLQQHDFTSQIFSLGYCPTGEW 238
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 64.8 bits (156), Expect = 1e-11
Identities = 6/67 (8%), Positives = 22/67 (32%), Gaps = 1/67 (1%)
Query: 63 SVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDT 122
S+ F ++ ++ W + S+ + + ++ +G D
Sbjct: 270 SLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVTGSGDK 328
Query: 123 NLKIWDI 129
++++
Sbjct: 329 KATVYEV 335
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 59.1 bits (141), Expect = 1e-09
Identities = 18/107 (16%), Positives = 32/107 (29%), Gaps = 8/107 (7%)
Query: 148 IRFTPDGRW-VVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADR 206
T DG+ V D ++ + ++ H + ++ + TG
Sbjct: 15 FHVTADGQMQPVPFPPDALIGPGIPRHARQINTLN-HGEVVCAVTISNPTRHVYTGG-KG 72
Query: 207 TVKFWDLETFELIGSTRPEVTGVH-----AITFHPDGRTLFSGFDDN 248
VK WD+ + PDG TL G + +
Sbjct: 73 CVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEAS 119
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.0 bits (107), Expect = 2e-05
Identities = 11/74 (14%), Positives = 28/74 (37%), Gaps = 2/74 (2%)
Query: 14 HSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLV 73
H + V + ++ ++ G D +N W ++ SS V S + +
Sbjct: 264 HESCVLSLKFAYC-GKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYI 321
Query: 74 LAGASTGVIKLWDL 87
+ G+ ++++
Sbjct: 322 VTGSGDKKATVYEV 335
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 89.5 bits (220), Expect = 2e-19
Identities = 46/342 (13%), Positives = 104/342 (30%), Gaps = 35/342 (10%)
Query: 18 VNCISIGKKACRFLITGGDDQKVNLWAI--GKPTALMSLCGLSSPVDSVAFDSAEVLVLA 75
++C + K + ++ +V+++ K + L + V V + ++
Sbjct: 10 ISCHAWNKD-RTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVT 68
Query: 76 GASTGVIKLWDLEES--KMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKG 133
+ +W L+ K + V + P + FA G + I ++
Sbjct: 69 CGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQEN 128
Query: 134 ----CIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHD---------- 179
C H K + ++ + P+ + +G D +++ ++
Sbjct: 129 DWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKM 188
Query: 180 --------FKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHA 231
G + + F +A S D TV D + + + E + A
Sbjct: 189 PFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLA 248
Query: 232 ITFHPDGRTLFSGFDDNLKVYSWEPVICHDSVDMGWSTLGDLCINDGKLLGCSFYRNSVG 291
+TF + + +G D ++++ DS S G L + R
Sbjct: 249 VTFITESSLVAAGHDCFPVLFTY------DSAAGKLSFGGRLDVPKQSSQRGLTARERFQ 302
Query: 292 IWVADVSHVEPYGVGAPEPD--QSICTEVKFNPPGSHSLEKV 331
S GA ++ +++ G +
Sbjct: 303 NLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQF 344
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 83.0 bits (203), Expect = 2e-17
Identities = 43/272 (15%), Positives = 86/272 (31%), Gaps = 31/272 (11%)
Query: 57 LSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKM--VRTLTGHKSNCTAVEFHPFGEF 114
L P+ A++ + + + +++ +K V L H T V++ P
Sbjct: 6 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNR 65
Query: 115 FASGCMDTNLKIWDIRKKG--CIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLT 172
+ D N +W ++ + R +R+ P+ + G V+ +
Sbjct: 66 IVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFE 125
Query: 173 AGKLLHDFKFHEGH----IRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVT- 227
K + + S+D+HP LLA GS D + + E+ P
Sbjct: 126 QENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWG 185
Query: 228 -----------------GVHAITFHPDGRTLFSGFDDNLKVYSWEPVICHDSVDMGWSTL 270
VH + F +G + D+ V + + TL
Sbjct: 186 SKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDS-TVCLADADKKMAVATLASETL 244
Query: 271 GDL---CINDGKLLGCSFYRNSVGIWVADVSH 299
L I + L+ + + ++ D +
Sbjct: 245 PLLAVTFITESSLV-AAGHDCFPVLFTYDSAA 275
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 77.6 bits (189), Expect = 1e-15
Identities = 25/170 (14%), Positives = 41/170 (24%), Gaps = 6/170 (3%)
Query: 52 MSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPF 111
V V F + V + + L D ++ V TL AV F
Sbjct: 195 FESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITE 254
Query: 112 GEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDL 171
A+G D ++ ++ G D
Sbjct: 255 SSLVAAGH-DCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEG- 312
Query: 172 TAGKLLHDFKFHEGHIRSIDFHP----LEFLLATGSADRTVKFWDLETFE 217
+A H+ + I T D + WD+ + E
Sbjct: 313 SAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLE 362
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 61.0 bits (146), Expect = 3e-10
Identities = 10/88 (11%), Positives = 24/88 (27%), Gaps = 3/88 (3%)
Query: 182 FHEGHIRSIDFHPLEFLLATGSADRTVKFWDLET--FELIGSTRPEVTGVHAITFHPDGR 239
F I ++ +A + V ++ + + + V + + PD
Sbjct: 5 FLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSN 64
Query: 240 TLFSGFDDNLKVYSWEPVICHDSVDMGW 267
+ + D Y W +
Sbjct: 65 RIVTCGTDR-NAYVWTLKGRTWKPTLVI 91
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 56.4 bits (134), Expect = 9e-09
Identities = 48/317 (15%), Positives = 90/317 (28%), Gaps = 33/317 (10%)
Query: 7 KLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLS--SPVDSV 64
++ E H+ V + ++T G D+ +W + T +L L V
Sbjct: 43 QVHELKEHNGQVTGVDWAPD-SNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCV 101
Query: 65 AFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNC----TAVEFHPFGEFFASGCM 120
+ E G+ + VI + E+ K ++++HP A+G
Sbjct: 102 RWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSC 161
Query: 121 DTNLKIWDIRKKG------------------CIHTYKGHTRGINTIRFTPDGRWVVSGGF 162
D +I+ K + ++ + F+ +G V
Sbjct: 162 DFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSH 221
Query: 163 DNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKF-WDLETFELIGS 221
D+ V + D + + ++ F L+A G V F +D +L
Sbjct: 222 DSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFG 281
Query: 222 TRPEVTGVHAITFHPDGRTLFSGFDDNLKVYSWEPVIC-----HDSVDMGWSTLGDLCIN 276
R +V + R F D H + S L
Sbjct: 282 GRLDVPKQSS-QRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAK 340
Query: 277 DGKLLGCSFYRNSVGIW 293
+ + IW
Sbjct: 341 CSQFCTTG-MDGGMSIW 356
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 84.6 bits (207), Expect = 6e-18
Identities = 27/187 (14%), Positives = 50/187 (26%), Gaps = 3/187 (1%)
Query: 95 TLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDG 154
TL GH ++ + +G D ++++D K + GH G+ +++ G
Sbjct: 7 TLRGHMTSVITC-LQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG 65
Query: 155 RWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEF-LLATGSADRTVKFWDL 213
V V + + TGS D T+ W L
Sbjct: 66 ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKL 125
Query: 214 ETFELIGSTRPE-VTGVHAITFHPDGRTLFSGFDDNLKVYSWEPVICHDSVDMGWSTLGD 272
+ E + T + + V + +TL
Sbjct: 126 PKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIV 185
Query: 273 LCINDGK 279
+ K
Sbjct: 186 WDVAQMK 192
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 74.5 bits (181), Expect = 1e-14
Identities = 43/346 (12%), Positives = 99/346 (28%), Gaps = 107/346 (30%)
Query: 14 HSANV-NCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVL 72
H +V C+ ++ITG DD+ + ++ L+ L G V ++ + +L
Sbjct: 11 HMTSVITCLQFED---NYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGIL 67
Query: 73 V-------------------------------------------LAGASTGVIKLWDLEE 89
V + G+ + +W L +
Sbjct: 68 VSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPK 127
Query: 90 SKMVRTL---------------------TGHKSNCTAVEFHPFGEFFASGCMDTNLKIWD 128
V + G SG D L +WD
Sbjct: 128 ESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWD 187
Query: 129 IRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFK------- 181
+ + C++ GHT I + + + + +S D +++WDL G+L++ +
Sbjct: 188 VAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVG 247
Query: 182 -------------------------------FHEGHIRSIDFHPLEFLLATGSADRTVKF 210
+H ++ +I + + ++
Sbjct: 248 LLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQFNI 307
Query: 211 WDLETFELIGSTRPEVTG-VHAITFHPDGRTLFSGFDDNLKVYSWE 255
++L + +L+ + + + ++ F D + +
Sbjct: 308 YNLRSGKLVHANILKDADQIWSVNFKGKTLVAAVEKDGQSFLEILD 353
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 73.8 bits (179), Expect = 2e-14
Identities = 25/123 (20%), Positives = 52/123 (42%), Gaps = 5/123 (4%)
Query: 136 HTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPL 195
T +GH + T + +V++G D +++V+D K L H+G + ++ +
Sbjct: 6 TTLRGHMTSVITC-LQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAH- 63
Query: 196 EFLLATGSADRTVKFWDLETFELIGSTRPEVTG---VHAITFHPDGRTLFSGFDDNLKVY 252
+L +GS DRTV+ WD++ + + + + + D+ L V+
Sbjct: 64 GGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVW 123
Query: 253 SWE 255
Sbjct: 124 KLP 126
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 82.6 bits (202), Expect = 3e-17
Identities = 13/158 (8%), Positives = 34/158 (21%), Gaps = 18/158 (11%)
Query: 72 LVLAGASTGVIKLWDLEESKM-------VRTLTGHKSNCTAVEFHPFGEFFASGCMDTN- 123
+ + + D + + + P +G D N
Sbjct: 192 NLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLND 251
Query: 124 ------LKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLL 177
D I + + + V+ +D+ K+
Sbjct: 252 MYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKV- 310
Query: 178 HDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLET 215
+ ++ + + D + + LE
Sbjct: 311 ---TEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEK 345
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 82.6 bits (202), Expect = 3e-17
Identities = 20/184 (10%), Positives = 47/184 (25%), Gaps = 20/184 (10%)
Query: 85 WDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGC-------IHT 137
+D+E K+ T S+ A F + + D
Sbjct: 164 YDMEGRKIFAA-TTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFV 222
Query: 138 YKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTA-------GKLLHDFKFHEGHIRSI 190
N + P +G +D + +++ +
Sbjct: 223 IPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVP 282
Query: 191 DFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGFDDNLK 250
+ +D++T ++ + + D +T+ DD K
Sbjct: 283 VHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVKN----NLTDLRLSADRKTVMVRKDDG-K 337
Query: 251 VYSW 254
+Y++
Sbjct: 338 IYTF 341
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 74.9 bits (182), Expect = 1e-14
Identities = 17/182 (9%), Positives = 42/182 (23%), Gaps = 26/182 (14%)
Query: 28 CRFLITGGDDQKVNLWAIG-------KPTALMSLCGLSSPVDSVAFDSAEVLVLAG---- 76
+ L + + + + + AG
Sbjct: 190 SKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDL 249
Query: 77 ---ASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKG 133
D + +M+ L + F ++ L +D++ +
Sbjct: 250 NDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTR- 308
Query: 134 CIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFH 193
+ +R + D + V+ D + + L + + D
Sbjct: 309 ---KVTEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPE--------DERTVETDKR 357
Query: 194 PL 195
PL
Sbjct: 358 PL 359
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 58.3 bits (139), Expect = 2e-09
Identities = 46/309 (14%), Positives = 82/309 (26%), Gaps = 24/309 (7%)
Query: 105 AVEFHPF-GEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFD 163
A +F P G+ A I D+ + I +R D + G
Sbjct: 7 AEDFSPLDGDLIAFVSRGQ-AFIQDVSGTYVLKV--PEPLRIRYVRRGGDTKVAFIHGTR 63
Query: 164 --NVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGS 221
+ + ++D GK F+ + G++ ++ + + DLET +
Sbjct: 64 EGDFLGIYDYRTGKAEK-FEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVI 122
Query: 222 TRPEVTGVHAITFHPDGRT-----------LFSGFDDNLKVYSWEPVICHDSVDMGWSTL 270
R + T + R + VY E +
Sbjct: 123 ERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDY 182
Query: 271 GDLCINDGKLLGCSFYRNSVGIW---VADVSHVEPYGVGAPEPDQSICTEVKFNPPGSHS 327
D K L YR+ V + S K P S
Sbjct: 183 APAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTS 242
Query: 328 LEKVGIIGRSTSGFRSTSPDYETKDIKTIYVDSTGGKPVASQKIGPLNSPKVVPPLDSE- 386
+ G + RS+ + + D + I + + G + P
Sbjct: 243 --EAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVL 300
Query: 387 EISDLQTEK 395
D++T K
Sbjct: 301 LKYDVKTRK 309
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 52.2 bits (123), Expect = 2e-07
Identities = 26/187 (13%), Positives = 59/187 (31%), Gaps = 16/187 (8%)
Query: 74 LAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTN--LKIWDIRK 131
+A S G + D+ + +++ V + L I+D +
Sbjct: 18 IAFVSRGQAFIQDVSGTYVLKV--PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDY-R 74
Query: 132 KGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSID 191
G ++ + + + +G++ V + DL GK + E I
Sbjct: 75 TGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFT 134
Query: 192 FHPLEFLLA----------TGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTL 241
+A G + + +D+E ++ +T + +A F D + L
Sbjct: 135 ISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTEN-SHDYAPAFDADSKNL 193
Query: 242 FSGFDDN 248
+ +
Sbjct: 194 YYLSYRS 200
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 81.4 bits (199), Expect = 5e-17
Identities = 34/314 (10%), Positives = 66/314 (21%), Gaps = 75/314 (23%)
Query: 13 AHSANVNCISIGKKACRFLITGGDDQKVNLWAI---GKPTALMSLCGLSSPVDSVAFDSA 69
A ++ I I L+ D + ++ K L+ P+ F
Sbjct: 9 APKDYISDIKIIPSK-SLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDN 67
Query: 70 EVLVLAGASTGVIKL--------------------------------------------W 85
L + + L
Sbjct: 68 TDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVI 127
Query: 86 DLEESKMVRTLTGHKS------NCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYK 139
D + + G ++ ++ + + +
Sbjct: 128 DPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTI 187
Query: 140 GHTRGINTIR----FTPDGRWVVSGGFDNVVKVWDLTAG---------------KLLHDF 180
+ IR + D V V +L
Sbjct: 188 EESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKD 247
Query: 181 KFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRT 240
+ SI+F P L T +D + W+L+T + I + +
Sbjct: 248 TNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKI-KNFAKFNEDSVVKIACSDNI 306
Query: 241 LFSGF-DDNLKVYS 253
L DD K +
Sbjct: 307 LCLATSDDTFKTNA 320
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 70.6 bits (171), Expect = 2e-13
Identities = 14/114 (12%), Positives = 36/114 (31%), Gaps = 7/114 (6%)
Query: 83 KLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHT 142
K + ++ T ++EF P +F + D + W+++ + I +
Sbjct: 234 KRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFN 293
Query: 143 RGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDF--HP 194
+ ++ + D+ K + + + I I +P
Sbjct: 294 -EDSVVKIACSDNILCLATSDDTFKTN----AAIDQTIELNASSIYIIFDYENP 342
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 69.9 bits (169), Expect = 3e-13
Identities = 22/160 (13%), Positives = 49/160 (30%), Gaps = 22/160 (13%)
Query: 80 GVIKLWDLEESKMVRTLTGHKSNCTA----VEFHPFGEFFASGCMDTNLKIWDIRKKGCI 135
++ + L + E +A +D + + +G
Sbjct: 170 SQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDD 229
Query: 136 ---------------HTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDF 180
+N+I F+P +++ + G D ++ W+L K + +F
Sbjct: 230 YNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNF 289
Query: 181 KFHEGHIRSIDFHPLEFLLATGSADRTVKFWDL--ETFEL 218
+ + +L ++D T K +T EL
Sbjct: 290 AKFNE-DSVVKIACSDNILCLATSDDTFKTNAAIDQTIEL 328
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 65.6 bits (158), Expect = 7e-12
Identities = 10/87 (11%), Positives = 26/87 (29%), Gaps = 4/87 (4%)
Query: 134 CIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGH---IRSI 190
+ + I+ I+ P ++ +D + V+ D + +
Sbjct: 3 IVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCC 62
Query: 191 DFHP-LEFLLATGSADRTVKFWDLETF 216
+F + + G+ + DL
Sbjct: 63 NFIDNTDLQIYVGTVQGEILKVDLIGS 89
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 65.3 bits (157), Expect = 1e-11
Identities = 7/74 (9%), Positives = 21/74 (28%), Gaps = 3/74 (4%)
Query: 91 KMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYK---GHTRGINT 147
++V+ K + ++ P D +L ++ + + +
Sbjct: 2 QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLC 61
Query: 148 IRFTPDGRWVVSGG 161
F + + G
Sbjct: 62 CNFIDNTDLQIYVG 75
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 54.5 bits (129), Expect = 3e-08
Identities = 25/249 (10%), Positives = 63/249 (25%), Gaps = 18/249 (7%)
Query: 58 SSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTL---TGHKSNCTAVEFHPFGE- 113
+ + ++ L+L + G + ++ + L +K F +
Sbjct: 11 KDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDL 70
Query: 114 --FFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDL 171
+ + + T GI I D + + + + +
Sbjct: 71 QIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPR 130
Query: 172 TAGKLLHDFKFHEGHIRSIDFHPLEF-----LLATGSADRTVKFWDLETFELIGSTRPEV 226
G + K + + L G + V+++ L E T E
Sbjct: 131 NYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEES 190
Query: 227 T----GVHAITFHPDGRTLFSGFDDN-LKVYSWEPVICHDSVDMGWSTLGDLCINDGKLL 281
+ D + V ++ + ++ + K
Sbjct: 191 GLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAF--RCHRLNLKDT 248
Query: 282 GCSFYRNSV 290
++ NS+
Sbjct: 249 NLAYPVNSI 257
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 38.7 bits (88), Expect = 0.003
Identities = 14/99 (14%), Positives = 34/99 (34%), Gaps = 6/99 (6%)
Query: 3 KRGYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVD 62
+ + + VN I + +FL T G D ++ W + + + +
Sbjct: 239 RCHRLNLKDTNLAYPVNSIEFSPR-HKFLYTAGSDGIISCWNLQTRKKIKNFAKF-NEDS 296
Query: 63 SVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKS 101
V ++ ++ S K + + +T+ + S
Sbjct: 297 VVKIACSDNILCLATSDDTFKTN----AAIDQTIELNAS 331
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 80.3 bits (196), Expect = 2e-16
Identities = 36/323 (11%), Positives = 80/323 (24%), Gaps = 62/323 (19%)
Query: 4 RGYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDS 63
+ + + H + I + T + + I + + +
Sbjct: 55 SHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLD 114
Query: 64 VAFDSAEVLVLA---------------GASTGVIKLWDLEESKM---------------- 92
L G +W
Sbjct: 115 SDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQ 174
Query: 93 --VRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWD------IRKKGCIHTYKGHTRG 144
V + T+V+ G A+G + ++I + + H+ ++
Sbjct: 175 GTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNS 233
Query: 145 INTIRFTPDGRWVVSGGFDNVVKVW----------------DLTAGKLLHDFKFHEGHIR 188
I +++F+P G + N + + H +
Sbjct: 234 IRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVM 293
Query: 189 SIDFHPLEFLLATGSADRTVKFWDLETFELI----GSTRPEVTGVHAITFHPDGRTLFSG 244
S+ F+ L + D ++FWD++T E I + G +L
Sbjct: 294 SLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEP 353
Query: 245 FDDNLKVY--SWEPVICHDSVDM 265
++K W + D +
Sbjct: 354 GVFDVKFLKKGWRSGMGADLNES 376
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 77.2 bits (188), Expect = 2e-15
Identities = 41/231 (17%), Positives = 78/231 (33%), Gaps = 43/231 (18%)
Query: 7 KLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSS------P 60
++ + S + I ++ + TG ++ V + + L + S
Sbjct: 176 TVESPMTPSQFATSVDISER--GLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNS 233
Query: 61 VDSVAFDSAEVLVLAGASTG---VIKLWDLEESKMVRT-------------LTGHKSNCT 104
+ SV F L+ + I L++ E + + + H S
Sbjct: 234 IRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVM 293
Query: 105 AVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGI----NTIRFTPDGRWVVSG 160
++ F+ GE S D L+ WD++ K I T H I + + G +
Sbjct: 294 SLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEP 353
Query: 161 GFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFW 211
G V+D+ KF + RS L L DR+++++
Sbjct: 354 G------VFDV---------KFLKKGWRSGMGADLNESLCCVCLDRSIRWF 389
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 73.0 bits (177), Expect = 6e-14
Identities = 25/224 (11%), Positives = 61/224 (27%), Gaps = 24/224 (10%)
Query: 58 SSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESK------MVRTLTGHKSNCTAVEF--- 108
+ + SV+ ++ ++ + G +K+WD + + HKS V+
Sbjct: 14 DADIFSVSACNS--FTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQA 71
Query: 109 ----HPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDN 164
A+ +L + I ++ + W + G N
Sbjct: 72 IERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASN 131
Query: 165 VVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRP 224
+ +G FHP + + + + LE + S
Sbjct: 132 DRLLSHRLV------ATDVKGTTYIWKFHPFADESNSLTLNWS---PTLELQGTVESPMT 182
Query: 225 EVTGVHAITFHPDGRTLFSGFDDNLKVYSWEPVICHDSVDMGWS 268
++ G + +++ + + + S
Sbjct: 183 PSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHS 226
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 72.2 bits (175), Expect = 9e-14
Identities = 42/312 (13%), Positives = 90/312 (28%), Gaps = 73/312 (23%)
Query: 13 AHSANVNCISIGKKACRFLITGGDDQKVNLW------------AIGKPTALMSLCGLSSP 60
AH A++ +S F ++ D + +W S
Sbjct: 12 AHDADIFSVSACNS---FTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDV 68
Query: 61 VDSVAFDSAEVLVLAGAST-GVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFG------- 112
+ ++ D+ E+ ++A S G + + + + + K + +
Sbjct: 69 LQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWG 128
Query: 113 --------EFFASGCMDTNLKIWDIRKKG------------------CIHTYKGHTRGIN 146
+ + IW + + ++
Sbjct: 129 ASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFAT 188
Query: 147 TIRFTPDGRWVVSGGFDNVVKV------WDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLA 200
++ + G + +G + V++ L + H + IRS+ F P LLA
Sbjct: 189 SVDISERGL-IATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLA 247
Query: 201 TGSADRTV---KFWDLETFELIGSTRPEVT-------------GVHAITFHPDGRTLFSG 244
+ ++ E E IGS V +++F+ G TL S
Sbjct: 248 IAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSA 307
Query: 245 FDDN-LKVYSWE 255
D L+ + +
Sbjct: 308 GWDGKLRFWDVK 319
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 66.0 bits (159), Expect = 9e-12
Identities = 28/204 (13%), Positives = 51/204 (25%), Gaps = 26/204 (12%)
Query: 134 CIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKF------HEGHI 187
+ K H I ++ + VS D +KVWD + H+ +
Sbjct: 6 TANAGKAHDADIFSVSACNS--FTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGL 63
Query: 188 RSIDF-------HPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRT 240
+D L+AT S + F+ + + E +
Sbjct: 64 HHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFW 123
Query: 241 LFSGFDDNLKVYSWEPVICHDSVDMGWSTLGDLCINDGKLLGCSFYRNSVGIWVADVSHV 300
W +T K + NS+ + + +
Sbjct: 124 ----------ALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLEL 173
Query: 301 EPYGVGAPEPDQSICTEVKFNPPG 324
V +P T V + G
Sbjct: 174 -QGTVESPMTPSQFATSVDISERG 196
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 75.7 bits (184), Expect = 3e-15
Identities = 19/115 (16%), Positives = 44/115 (38%), Gaps = 8/115 (6%)
Query: 108 FHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGI-------NTIRFTPDGRWVVSG 160
++P G FAS D + +++ ++ + + ++PDG + S
Sbjct: 197 YNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASA 256
Query: 161 GFDNVVKVWDLTAGKLLHDFKFHEGH-IRSIDFHPLEFLLATGSADRTVKFWDLE 214
D +K+W++ K+ + + + L + SA+ + F + E
Sbjct: 257 SADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPE 311
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 71.1 bits (172), Expect = 1e-13
Identities = 14/88 (15%), Positives = 27/88 (30%), Gaps = 1/88 (1%)
Query: 85 WDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRG 144
H + + + P G AS D +KIW++ T TR
Sbjct: 223 KTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRI 282
Query: 145 INT-IRFTPDGRWVVSGGFDNVVKVWDL 171
+ + + +VS + + +
Sbjct: 283 EDQQLGIIWTKQALVSISANGFINFVNP 310
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 68.0 bits (164), Expect = 1e-12
Identities = 16/93 (17%), Positives = 30/93 (32%), Gaps = 3/93 (3%)
Query: 104 TAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFD 163
+ P G+ T++ + Y H+ + +P G + SG
Sbjct: 21 VVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVH 79
Query: 164 NVVKVWDLTAG--KLLHDFKFHEGHIRSIDFHP 194
V++WD T L G ++ I +
Sbjct: 80 GNVRIWDTTQTTHILKTTIPVFSGPVKDISWDS 112
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 66.1 bits (159), Expect = 5e-12
Identities = 38/267 (14%), Positives = 81/267 (30%), Gaps = 15/267 (5%)
Query: 3 KRGYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSL-----CGL 57
+ + HS +G V +W + T ++ G
Sbjct: 46 GSLTDTEIYTEHSHQTTVAKTSPSGYY-CASGDVHGNVRIWDTTQTTHILKTTIPVFSGP 104
Query: 58 SSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFAS 117
+ + V G + ++ + S
Sbjct: 105 VKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIIS 164
Query: 118 GCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLL 177
G D + I++ T+ HT+ ++++R+ PDG S G D + +++ G
Sbjct: 165 GSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKT 224
Query: 178 H-------DFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGS-TRPEVTGV 229
H G + + + P +A+ SAD+T+K W++ T ++ +
Sbjct: 225 GVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIED 284
Query: 230 HAITFHPDGRTLFSGFDDNLKVYSWEP 256
+ + L S + + P
Sbjct: 285 QQLGIIWTKQALVSISANG-FINFVNP 310
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 62.2 bits (149), Expect = 9e-11
Identities = 12/73 (16%), Positives = 20/73 (27%), Gaps = 2/73 (2%)
Query: 140 GHTRGINT-IRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFL 198
RG + TP G + V + + + H P +
Sbjct: 14 RTARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYY 72
Query: 199 LATGSADRTVKFW 211
A+G V+ W
Sbjct: 73 CASGDVHGNVRIW 85
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 58.4 bits (139), Expect = 1e-09
Identities = 14/85 (16%), Positives = 29/85 (34%), Gaps = 2/85 (2%)
Query: 74 LAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKK- 132
+ + + + T H T + P G + ASG + N++IWD +
Sbjct: 32 IQYCNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTT 91
Query: 133 -GCIHTYKGHTRGINTIRFTPDGRW 156
T + + I + + +
Sbjct: 92 HILKTTIPVFSGPVKDISWDSESKR 116
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 44.9 bits (104), Expect = 3e-05
Identities = 9/83 (10%), Positives = 17/83 (20%), Gaps = 2/83 (2%)
Query: 185 GHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSG 244
G + P + + +V + + P G SG
Sbjct: 18 GTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASG 76
Query: 245 FDDNLKVYSWEPVICHDSVDMGW 267
V W+ +
Sbjct: 77 DVHG-NVRIWDTTQTTHILKTTI 98
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 41.4 bits (95), Expect = 4e-04
Identities = 5/62 (8%), Positives = 22/62 (35%), Gaps = 1/62 (1%)
Query: 28 CRFLITGGDDQKVNLWAIGKPTALMSLCGLSS-PVDSVAFDSAEVLVLAGASTGVIKLWD 86
+ + D+ + +W + ++ + + + +++ ++ G I +
Sbjct: 250 GTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVN 309
Query: 87 LE 88
E
Sbjct: 310 PE 311
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 75.4 bits (183), Expect = 4e-15
Identities = 16/86 (18%), Positives = 27/86 (31%), Gaps = 2/86 (2%)
Query: 134 CIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDF-KFHEGHIRSIDF 192
GH + I + + DG+ + S + + WD++ G F H I I
Sbjct: 4 IDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKT 63
Query: 193 HPLEFLLATGSADRTVKFWDLETFEL 218
L D +K +
Sbjct: 64 TSKGDLFTVSW-DDHLKVVPAGGSGV 88
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 69.6 bits (168), Expect = 3e-13
Identities = 16/104 (15%), Positives = 31/104 (29%), Gaps = 2/104 (1%)
Query: 91 KMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTY-KGHTRGINTIR 149
+ + GH TA+ G+ S + ++ WDI + H I I+
Sbjct: 3 SIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIK 62
Query: 150 FTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFH 193
T + + +D+ +KV +
Sbjct: 63 TTSK-GDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGL 105
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 67.3 bits (162), Expect = 2e-12
Identities = 15/76 (19%), Positives = 30/76 (39%), Gaps = 2/76 (2%)
Query: 99 HKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIH--TYKGHTRGINTIRFTPDGRW 156
H + V + P A+G +D ++ +W++ K H +
Sbjct: 223 HTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETT 282
Query: 157 VVSGGFDNVVKVWDLT 172
+VS G D+ +K W++
Sbjct: 283 IVSAGQDSNIKFWNVP 298
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 64.2 bits (154), Expect = 2e-11
Identities = 31/294 (10%), Positives = 69/294 (23%), Gaps = 50/294 (17%)
Query: 8 LQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLC-GLSSPVDSVAF 66
Q H+ + +S + L + + +N W I + ++ + +
Sbjct: 5 DQVRYGHNKAITALSSSADG-KTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKT 63
Query: 67 DSAEVLVLAGASTGVIKLWDLEESK---MVRTLTGHKSNCTAVEFHPFGEFFASGCMDTN 123
S L +K+ S S + G+ + C
Sbjct: 64 TSKGDLFTVS-WDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHI 122
Query: 124 LKIWDIRKKGCIHTY-----------------------------------------KGHT 142
+ +Y
Sbjct: 123 AIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEI 182
Query: 143 RGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATG 202
+ V + + + FH + + + P LATG
Sbjct: 183 TSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATG 242
Query: 203 SADRTVKFWDLETFELIGSTRPEVTGVHAIT--FHPDGRTLFSGFDDN-LKVYS 253
S D +V W++ + ++ + T+ S D+ +K ++
Sbjct: 243 SLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWN 296
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 64.2 bits (154), Expect = 2e-11
Identities = 17/119 (14%), Positives = 41/119 (34%), Gaps = 2/119 (1%)
Query: 97 TGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRW 156
++ F + + + +++ HT + + ++PD
Sbjct: 179 PAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVR 238
Query: 157 VVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSID--FHPLEFLLATGSADRTVKFWDL 213
+ +G DN V VW++ + S++ E + + D +KFW++
Sbjct: 239 LATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNV 297
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 56.9 bits (135), Expect = 5e-09
Identities = 16/95 (16%), Positives = 27/95 (28%), Gaps = 1/95 (1%)
Query: 174 GKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTG-VHAI 232
G + H I ++ L + A+ + WD+ T + I
Sbjct: 2 GSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGI 61
Query: 233 TFHPDGRTLFSGFDDNLKVYSWEPVICHDSVDMGW 267
G +DD+LKV S +
Sbjct: 62 KTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVAN 96
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 47.7 bits (111), Expect = 3e-06
Identities = 8/57 (14%), Positives = 20/57 (35%), Gaps = 2/57 (3%)
Query: 75 AGASTGVIKLWDLEESKMVRTLT--GHKSNCTAVEFHPFGEFFASGCMDTNLKIWDI 129
G+ + +W++ + + H + S D+N+K W++
Sbjct: 241 TGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNV 297
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 39.2 bits (89), Expect = 0.002
Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 4/63 (6%)
Query: 28 CRFLITGGDDQKVNLWAIGKPTALMSLCGLS---SPVDSVAFDSAEVLVLAGASTGVIKL 84
L TG D V +W + KP+ + + S V+SV + + +V + IK
Sbjct: 236 NVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIV-SAGQDSNIKF 294
Query: 85 WDL 87
W++
Sbjct: 295 WNV 297
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 73.7 bits (179), Expect = 2e-14
Identities = 17/164 (10%), Positives = 34/164 (20%), Gaps = 4/164 (2%)
Query: 28 CRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDL 87
+ + A + DL
Sbjct: 167 VEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDL 226
Query: 88 EESKMVRT-LTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGIN 146
E +M + + +P L+ +D+ K I
Sbjct: 227 ETGEMAMREVRIMDVFYFSTAVNPAKTRAF--GAYNVLESFDLEKNASIKRV-PLPHSYY 283
Query: 147 TIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSI 190
++ + DG V GG + +D + S+
Sbjct: 284 SVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLPGNASMSL 327
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 68.7 bits (166), Expect = 8e-13
Identities = 23/241 (9%), Positives = 47/241 (19%), Gaps = 27/241 (11%)
Query: 113 EFFASGCMDTNLKIWDIRKKGCIHTYKGHTRG--INTIRFTPDGRWV-VSGGFDNVVKVW 169
++ + L + D K G P GR + +
Sbjct: 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKI 61
Query: 170 DLTAGKLLHDFKFHEGH-----IRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTR- 223
DL G+ L + P LA + ++ E +
Sbjct: 62 DLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYD 121
Query: 224 ----------PEVTGVHAITFHPDGRTLFSGFDDNLKVYSWEPVICH------DSVDMGW 267
+ + + DG L+ D + + +
Sbjct: 122 AETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYA 181
Query: 268 STLGDLCINDGKLLGCSFYRNSVGIWVAD--VSHVEPYGVGAPEPDQSICTEVKFNPPGS 325
N + G D G+ + + +
Sbjct: 182 QPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDV 241
Query: 326 H 326
Sbjct: 242 F 242
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 64.1 bits (154), Expect = 2e-11
Identities = 16/135 (11%), Positives = 32/135 (23%), Gaps = 2/135 (1%)
Query: 99 HKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVV 158
+ T L D+ + +
Sbjct: 196 GVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIM-DVFYFSTAVNPAKTR 254
Query: 159 SGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFEL 218
+ G NV++ +DL + S++ + G A + +D ET E
Sbjct: 255 AFGAYNVLESFDLEKNASIKRVP-LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEK 313
Query: 219 IGSTRPEVTGVHAIT 233
G ++
Sbjct: 314 KGQVDLPGNASMSLA 328
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 56.0 bits (133), Expect = 1e-08
Identities = 25/266 (9%), Positives = 59/266 (22%), Gaps = 42/266 (15%)
Query: 29 RFLITGGDDQKVNLW--AIGKPTA---LMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIK 83
T + + G+ L + + A + S ++
Sbjct: 47 IAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLE 106
Query: 84 LWDLEESKM-----------VRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIR-- 130
L E R T + + G D ++ +
Sbjct: 107 LTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTL 166
Query: 131 -------------------KKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDL 171
D + + DL
Sbjct: 167 VEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDL 226
Query: 172 TAGKLLH-DFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVH 230
G++ + + + S +P + ++ +DLE I +
Sbjct: 227 ETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLP-HSYY 283
Query: 231 AITFHPDGRTLFSGFDDNLKVYSWEP 256
++ DG T++ G + +++
Sbjct: 284 SVNVSTDGSTVWLGGALG-DLAAYDA 308
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 52.9 bits (125), Expect = 1e-07
Identities = 25/210 (11%), Positives = 59/210 (28%), Gaps = 24/210 (11%)
Query: 72 LVLAGASTGVIKLWDLEESKMVRTLT--GHKSNCTAVEFHPFGEF-FASGCMDTNLKIWD 128
+LA A + + D E+ + + +T P G +A+ +L D
Sbjct: 3 YILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKID 62
Query: 129 IRKKGCIHTYKGHT-----RGINTIRFTPDGRWVVSGGFDNVVKV------------WDL 171
+ + T + + +PDG+ + +++ +D
Sbjct: 63 LVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDA 122
Query: 172 TAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHA 231
F+ I + + L D V + T + +
Sbjct: 123 ETLSRRKAFEAP-RQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETY- 180
Query: 232 ITFHPDGRTLFSGFDDNLKVYSWEPVICHD 261
PD +++ + + + + D
Sbjct: 181 --AQPDVLAVWNQHESSGVMATPFYTARKD 208
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 72.7 bits (176), Expect = 2e-14
Identities = 18/73 (24%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
Query: 99 HKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKG-CIHTYKGHTRGINTIRFTPDGRWV 157
+ A E + A+G +DTN+ I+ +++ I H G+N + + +
Sbjct: 214 KPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-L 272
Query: 158 VSGGFDNVVKVWD 170
VS G D +K W+
Sbjct: 273 VSSGADACIKRWN 285
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 70.0 bits (169), Expect = 2e-13
Identities = 12/115 (10%), Positives = 30/115 (26%), Gaps = 2/115 (1%)
Query: 99 HKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVV 158
A + I+ + V
Sbjct: 172 PSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVA 231
Query: 159 SGGFDNVVKVWDL-TAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWD 212
+G D + ++ + K++ H+ + ++ + L + AD +K W+
Sbjct: 232 TGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWET-PSTLVSSGADACIKRWN 285
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 63.8 bits (153), Expect = 2e-11
Identities = 34/290 (11%), Positives = 85/290 (29%), Gaps = 54/290 (18%)
Query: 8 LQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFD 67
L+ H+ + +++ LI+G D ++ W+ S+ + S+
Sbjct: 6 LKTISGHNKGITALTVNP-----LISGSYDGRIMEWSSSS-----MHQDHSNLIVSLDNS 55
Query: 68 SAEVLVLAG--------------------------------ASTGVIKLWDLEESKMVRT 95
A+ + L + +
Sbjct: 56 KAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIK 115
Query: 96 LTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGR 155
S +AV +T + + I +P
Sbjct: 116 SVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSET 175
Query: 156 WVVSGGFDNVVKVWDLTAGKL-----------LHDFKFHEGHIRSIDFHPLEFLLATGSA 204
++ +G + ++DL + ++ ++ + + + E L+ATGS
Sbjct: 176 YIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSL 235
Query: 205 DRTVKFWDLETF-ELIGSTRPEVTGVHAITFHPDGRTLFSGFDDNLKVYS 253
D + + ++ ++I + GV+ + + + SG D +K ++
Sbjct: 236 DTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPSTLVSSGADACIKRWN 285
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 58.8 bits (140), Expect = 8e-10
Identities = 12/69 (17%), Positives = 28/69 (40%), Gaps = 9/69 (13%)
Query: 89 ESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTI 148
++++T++GH TA+ +P SG D + W ++ H+ I ++
Sbjct: 2 HDEVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSS-----MHQDHSNLIVSL 52
Query: 149 RFTPDGRWV 157
+ +
Sbjct: 53 DNSKAQEYS 61
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 57.3 bits (136), Expect = 3e-09
Identities = 24/134 (17%), Positives = 44/134 (32%), Gaps = 17/134 (12%)
Query: 134 CIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFH 193
+ T GH +GI + P ++SG +D + W ++ + H I S+D
Sbjct: 5 VLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSM-----HQDHSNLIVSLDNS 55
Query: 194 PLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGFDDNLKVYS 253
+ + WD + + + + DG T DD+L +
Sbjct: 56 KAQEYSSI--------SWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQ 107
Query: 254 WEPVICHDSVDMGW 267
SV +
Sbjct: 108 SFTGDIIKSVRLNS 121
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 55.4 bits (131), Expect = 1e-08
Identities = 10/55 (18%), Positives = 23/55 (41%), Gaps = 2/55 (3%)
Query: 76 GASTGVIKLWDLEES-KMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDI 129
G+ I ++ ++ K+++ L HK + + S D +K W++
Sbjct: 233 GSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWET-PSTLVSSGADACIKRWNV 286
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 53.8 bits (127), Expect = 4e-08
Identities = 14/94 (14%), Positives = 28/94 (29%), Gaps = 9/94 (9%)
Query: 174 GKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAIT 233
++L H I ++ +PL +GS D + W + + + ++
Sbjct: 3 DEVLKTISGHNKGITALTVNPL----ISGSYDGRIMEWSSSSMH-----QDHSNLIVSLD 53
Query: 234 FHPDGRTLFSGFDDNLKVYSWEPVICHDSVDMGW 267
+DD LKV +
Sbjct: 54 NSKAQEYSSISWDDTLKVNGITKHEFGSQPKVAS 87
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 71.4 bits (173), Expect = 1e-13
Identities = 32/232 (13%), Positives = 56/232 (24%), Gaps = 32/232 (13%)
Query: 11 FVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAE 70
+ +A + + G + + ++ A+
Sbjct: 152 HIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEF-----LINHPAYSQKA 206
Query: 71 VLVLAGASTGVIKLWDLEESK--MVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWD 128
++ TG I DL + + A + P G + +
Sbjct: 207 GRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYL- 265
Query: 129 IRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIR 188
V V D G+ L F+ I
Sbjct: 266 ---------------------LVDQRDEWRHKTASRFVVVLDAKTGERLAKFE-MGHEID 303
Query: 189 SIDFHP--LEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDG 238
SI+ L A + D+T+ D E+ E + S G IT G
Sbjct: 304 SINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITTADMG 355
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 54.8 bits (130), Expect = 3e-08
Identities = 37/281 (13%), Positives = 70/281 (24%), Gaps = 44/281 (15%)
Query: 12 VAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEV 71
+ + + I+ + G V ++ + +P V
Sbjct: 52 PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMT 111
Query: 72 LVLAGASTG---------VIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDT 122
+ T + + DLE R L F + F C D
Sbjct: 112 SLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDC---YHIFPTAPDTFFMHCRDG 168
Query: 123 NLKIWDIRKKGCIHTYKGHTRG------INTIRFTPDGRWVVSGGFDNVVKVWDLTAGKL 176
+L +G IN ++ +V + + DL++G
Sbjct: 169 SLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDA 228
Query: 177 --LHDFKFHEGHIRSIDFHPLEFLLATGSAD--------------------RTVKFWDLE 214
L + R+ + P + R V D +
Sbjct: 229 KFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAK 288
Query: 215 TFELIGSTRPEVTGVHAITFHPDGRTLF---SGFDDNLKVY 252
T E + + +I D + L S D L ++
Sbjct: 289 TGERLA-KFEMGHEIDSINVSQDEKPLLYALSTGDKTLYIH 328
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 38.2 bits (87), Expect = 0.004
Identities = 8/44 (18%), Positives = 13/44 (29%), Gaps = 2/44 (4%)
Query: 200 ATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFS 243
A +A D E +IG + + DG +
Sbjct: 22 AHFAAVTQQFVIDGEAGRVIGMI--DGGFLPNPVVADDGSFIAH 63
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 70.5 bits (171), Expect = 2e-13
Identities = 17/129 (13%), Positives = 36/129 (27%), Gaps = 3/129 (2%)
Query: 60 PVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMV-RTLTGHKSNCTAVEFHPFGEFFASG 118
F + DL+ K + P G
Sbjct: 210 LYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYG 269
Query: 119 CMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLH 178
++ L +D++++ I + F G + GG N + V++ + +
Sbjct: 270 VLNR-LAKYDLKQRKLIKAAN-LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVK 327
Query: 179 DFKFHEGHI 187
+ K G +
Sbjct: 328 NIKLPGGDM 336
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 69.0 bits (167), Expect = 6e-13
Identities = 18/119 (15%), Positives = 37/119 (31%), Gaps = 3/119 (2%)
Query: 104 TAVEFHPFGEFFASGCMDTNLKIWDIRKKGCI-HTYKGHTRGINTIRFTPDGRWVVSGGF 162
T F + A+ + D++ + T T +P + G
Sbjct: 212 TIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV- 270
Query: 163 DNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGS 221
N + +DL KL+ + + F L G + ++ +T E + +
Sbjct: 271 LNRLAKYDLKQRKLIKAAN-LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKN 328
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 66.3 bits (160), Expect = 6e-12
Identities = 25/305 (8%), Positives = 70/305 (22%), Gaps = 48/305 (15%)
Query: 12 VAHSANVNCISIGKKACRFLITGGDDQKVNLW------------------AIGKPTALMS 53
+ + + + +G+ +
Sbjct: 36 MPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFA 95
Query: 54 LCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGE 113
+ V + + + ++++ + + + V +
Sbjct: 96 ISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPM-PRQVYLMRAAD 154
Query: 114 FFASGCMDTNLKIWDIRKKGCIHTYKGHTRG-------------------------INTI 148
+ ++ D++
Sbjct: 155 DGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIA 214
Query: 149 RFTPDGRWVVSGGFDNVVKVWDLTAGK-LLHDFKFHEGHIRSIDFHPLEFLLATGSADRT 207
RF D + + DL GK +F + P + G +
Sbjct: 215 RFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLN-R 273
Query: 208 VKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGFDDN-LKVYSWEPVICHDSVDMG 266
+ +DL+ +LI + + F G L+ G N L V++ + + ++ +
Sbjct: 274 LAKYDLKQRKLIK-AANLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLP 332
Query: 267 WSTLG 271
+
Sbjct: 333 GGDMS 337
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 65.1 bits (157), Expect = 1e-11
Identities = 21/236 (8%), Positives = 61/236 (25%), Gaps = 25/236 (10%)
Query: 150 FTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEG-HIRSIDFHP-LEFLLATGSADRT 207
+++ + N + V D+ + + + + P +
Sbjct: 4 LKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGD 63
Query: 208 VKFWDLETFELI------GSTRPEVTGVHAITFHPDGRTLFSGFDDN------------- 248
+ DL+T + +++ PDG+ +++ +
Sbjct: 64 IYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPR 123
Query: 249 LKVYSWEPVICHDSVDMGWSTLGDLCI---NDGKLLGCSFYRNSVGIWVADVSHVEPYGV 305
L+V+S + V + +DG L + + + P
Sbjct: 124 LEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRN 183
Query: 306 GAPEPDQSIC-TEVKFNPPGSHSLEKVGIIGRSTSGFRSTSPDYETKDIKTIYVDS 360
+ + + H + I R + + ++ + +
Sbjct: 184 WNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKT 239
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 59.4 bits (142), Expect = 9e-10
Identities = 28/324 (8%), Positives = 67/324 (20%), Gaps = 34/324 (10%)
Query: 64 VAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLT-GHKSNCTAVEFHPFGEF-FASGCMD 121
A + ++ + + D+ + ++ K P +
Sbjct: 2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHY 61
Query: 122 TNLKIWDIRKKGCIH------TYKGHTRGINTIRFTPDGRWVVSGGFD------------ 163
++ D+ R + + +PDG+ V +
Sbjct: 62 GDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKP 121
Query: 164 NVVKVWDLTAGKLLHDFKFHEGH--IRSIDFHPLEFLLATGSADRTVKFWDLETFELIGS 221
++V+ G + + + L G + + +
Sbjct: 122 PRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPL 181
Query: 222 TRPEVTGVHAITFHPDGRTLF-SGFDDNLKVYSWEPVICHDSVDMGWSTLGDLCINDGKL 280
PD + + + D + L
Sbjct: 182 R----NWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDL 237
Query: 281 LGCSFYRNSVGIWVADVSHVEPYGVGAPEPDQSICTEVKFNPPGSHSLEKVGIIGRSTSG 340
E Y G P N + L++ +I +
Sbjct: 238 KTGKT------HTQEFADLTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAANLD 291
Query: 341 FRSTSPDYETKDIKTIYVDSTGGK 364
+ K +Y+ T
Sbjct: 292 HTYYCVAF-DKKGDKLYLGGTFND 314
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 69.9 bits (169), Expect = 3e-13
Identities = 35/225 (15%), Positives = 68/225 (30%), Gaps = 12/225 (5%)
Query: 1 MAKRGYKLQEFVAHSANVNCISIGKKACRFLITGGD-DQKVNLWAIGKPTALMSLCGLSS 59
+ EF + ++ IS + R + G D + +L + G S
Sbjct: 101 NSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQ 160
Query: 60 PVDSVAFDSAEVLVLAGASTGVIK----LWDLEESKMVRTLTGHKSNCTAVEFHP----F 111
+++ + + + S RT S VEF P F
Sbjct: 161 RINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEF 220
Query: 112 GEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDL 171
S + I + +G D + + G D ++VWD+
Sbjct: 221 VITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDV 280
Query: 172 TAGKLLHDFKFHEGHIRSID---FHPLEFLLATGSADRTVKFWDL 213
T K + + + + + + + S D T+ F++L
Sbjct: 281 TTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL 325
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 64.6 bits (155), Expect = 2e-11
Identities = 41/296 (13%), Positives = 90/296 (30%), Gaps = 28/296 (9%)
Query: 59 SPVDSVAFD-SAEVLVLAGASTGVIKLWDLEESKM--VRTLTGHKSN-CTAVEFHPF--G 112
+ +++D + + + ++ D +SK+ V TGH S+ T V+F P
Sbjct: 18 NFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGS 77
Query: 113 EFFASGCMDTNLKIWDIRKKGCIHT--------YKGHTRGINTIRFTPDGRWVV--SGGF 162
++ SG + +W ++ ++ I+ I + +GR + G
Sbjct: 78 QYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGR 137
Query: 163 DNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGST 222
DN +G L + H I + + + D + ++
Sbjct: 138 DNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSAS 197
Query: 223 RPEVTG----VHAITFHPDGRTLFSGFDDNLKVYSWEPVICHDSVDMGWSTLG------D 272
V + F PD + K+ ++ +
Sbjct: 198 DRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFA 257
Query: 273 LCINDGKLLGCSFYRNSVGIWVADVSHVEPYGVGAPEPDQSICTEVKFNPPGSHSL 328
L D + ++ +W DV+ + + Q +V G+ +
Sbjct: 258 LSWLDSQKFATVGADATIRVW--DVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRI 311
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 61.1 bits (146), Expect = 2e-10
Identities = 28/185 (15%), Positives = 57/185 (30%), Gaps = 16/185 (8%)
Query: 99 HKSNCTAVEFHPFGEFFASGCMDTN-LKIWDI--RKKGCIHTYKGH-TRGINTIRFTP-- 152
++ T + + P A C + ++ D K + + GH + + T++F+P
Sbjct: 16 QRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIK 75
Query: 153 DGRWVVSGGFDNVVKVWDLTAGKLLHDFKF--------HEGHIRSIDFHP--LEFLLATG 202
+++ SG V VW T K + + G I I + +
Sbjct: 76 GSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGE 135
Query: 203 SADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGFDDNLKVYSWEPVICHDS 262
D F ++ +G ++A D+ V ++ S
Sbjct: 136 GRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFS 195
Query: 263 VDMGW 267
Sbjct: 196 ASDRT 200
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 58.4 bits (139), Expect = 2e-09
Identities = 41/262 (15%), Positives = 88/262 (33%), Gaps = 23/262 (8%)
Query: 14 HSANVNCISIG-KKACRFLITGGDDQKVNLWAIGKPTALMSLC--------GLSSPVDSV 64
S+ V + K ++L +G + KV +W S+ L+ P+ +
Sbjct: 62 GSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDI 121
Query: 65 AF--DSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDT 122
++ + + V+ + + ++GH A + D
Sbjct: 122 SWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDD 181
Query: 123 NLK----IWDIRKKGCIHTYKGHTRGINTIRFTPD-GRWVVSGGFDNVVKVWDLTAGKLL 177
+ T+ + + F+PD G +V++ G D + +D +G+ L
Sbjct: 182 GSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFL 241
Query: 178 HDFKFHEGHIRSIDFHPLEF---LLATGSADRTVKFWDLETFELIGSTRPEVTGVH---- 230
+ + ++ F AT AD T++ WD+ T + + + +
Sbjct: 242 KYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQV 301
Query: 231 AITFHPDGRTLFSGFDDNLKVY 252
+ +GR + D L Y
Sbjct: 302 GVVATGNGRIISLSLDGTLNFY 323
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 60.0 bits (144), Expect = 6e-10
Identities = 23/238 (9%), Positives = 45/238 (18%), Gaps = 33/238 (13%)
Query: 43 WAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSN 102
I P A G + SA +L + + + +
Sbjct: 110 ADIELPDAPRFSVGPRVHIIGNCASSACLLF-FLFGSSAAAGLSVPGASDDQLTKSASC- 167
Query: 103 CTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIH------TYKGHTRGINTIRFTPDGRW 156
G +L D+ + G
Sbjct: 168 --FHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGML 225
Query: 157 VVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKF------ 210
V + + + +E ++ +F F + +
Sbjct: 226 VWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEH 285
Query: 211 -------------WDLETFELIGSTRPEVTGVHAITFHPDGRTLF---SGFDDNLKVY 252
+ G AI DG + S + L +Y
Sbjct: 286 SRSCLAAAENTSSVTASVGQTSG-PISNGHDSDAIIAAQDGASDNYANSAGTEVLDIY 342
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 56.9 bits (136), Expect = 5e-09
Identities = 19/224 (8%), Positives = 41/224 (18%), Gaps = 30/224 (13%)
Query: 55 CGLSSPVDSVAF--DSAEVLVLAGAS---TGVIKLWDLEESKMVRTLTGHKSNCTAVEF- 108
S + A T + + G +
Sbjct: 16 AASDGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLSLAVAGHS 75
Query: 109 -------HPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGI-------NTIRFTPDG 154
A G ++++D I + + I
Sbjct: 76 GSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASS 135
Query: 155 RWVVSGGF-DNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDL 213
++ F + + K GS ++ DL
Sbjct: 136 ACLLFFLFGSSAAAGLSVPGASDDQLTKSASC---FHIHPGAAATHYLGSCPASLAASDL 192
Query: 214 ET------FELIGSTRPEVTGVHAITFHPDGRTLFSGFDDNLKV 251
T + A + G +++ L+
Sbjct: 193 AAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQG 236
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 48.8 bits (115), Expect = 2e-06
Identities = 19/177 (10%), Positives = 45/177 (25%), Gaps = 24/177 (13%)
Query: 29 RFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLE 88
+ +G + + + +LV A AS+ +
Sbjct: 186 SLAASDLAAAPAAAGIVGAQCTG----AQNCSSQAAQANYPGMLVWAVASSILQGDIPAA 241
Query: 89 ESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHT------ 142
+ M + G++S A F G + +T+ + +
Sbjct: 242 GATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTA 301
Query: 143 ------------RGINTIRFTPDGRW--VVSGGFDNVVKVWDLTAGKLLHDFKFHEG 185
+ I DG + V+ ++D + + + +G
Sbjct: 302 SVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKG 358
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Score = 60.2 bits (145), Expect = 7e-10
Identities = 18/125 (14%), Positives = 33/125 (26%), Gaps = 7/125 (5%)
Query: 121 DTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDF 180
+ + D ++ R + GR++ G D V + DL +
Sbjct: 41 AGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVA 99
Query: 181 KF-----HEGHIRSIDFHP-LEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITF 234
+ S ++ +A D ET E +
Sbjct: 100 EIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEY 159
Query: 235 HPDGR 239
HP+ R
Sbjct: 160 HPEPR 164
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Score = 53.6 bits (128), Expect = 8e-08
Identities = 11/132 (8%), Positives = 31/132 (23%), Gaps = 6/132 (4%)
Query: 128 DIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHI 187
++R+ +H + + + V+ + + D + ++
Sbjct: 6 EMRESWKVHVAPEDRPTQQMNDWDLENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYAV- 64
Query: 188 RSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTG-----VHAITFHPDGRTLF 242
L D V DL E ++ + + +
Sbjct: 65 HISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAI 124
Query: 243 SGFDDNLKVYSW 254
+G +
Sbjct: 125 AGAYWPPQYVIM 136
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Score = 51.7 bits (123), Expect = 3e-07
Identities = 29/242 (11%), Positives = 57/242 (23%), Gaps = 39/242 (16%)
Query: 30 FLITGGDDQKVNLW--AIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDL 87
F +T D ++ L + + ++ V ++ + G + + DL
Sbjct: 34 FSVTLRDAGQIALIDGSTYEIKTVLDT---GYAVHISRLSASGRYLFVIGRDGKVNMIDL 90
Query: 88 EESKM-----VRTLTGHKSNCTAVEFHPFG-EFFASGCMDTNLKIWDIRKKGCIHTYKGH 141
+ ++ + +S T+ A I D
Sbjct: 91 WMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTR 150
Query: 142 TRGINT-----------IRFTPDG-RWVVSGGFDNVVKVWDLT-----------AGKLLH 178
+ I + ++V+ + + D T A + LH
Sbjct: 151 GMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLH 210
Query: 179 DFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDG 238
D H I L +T + G A HP
Sbjct: 211 DGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDT-----GGQTPHPGRGANFVHPTF 265
Query: 239 RT 240
Sbjct: 266 GP 267
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 60.0 bits (144), Expect = 7e-10
Identities = 30/248 (12%), Positives = 65/248 (26%), Gaps = 26/248 (10%)
Query: 67 DSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKI 126
D + + G I L D + K+V+ + + G + D + +
Sbjct: 29 DLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYAVH-ISRMSASGRYLLVIGRDARIDM 87
Query: 127 WDIRKKGC-----IHTYKGHTRGINTIRFTPDGRWV-VSGGFDNVVKVWDLTAGKLLHDF 180
D+ K I ++ + R+ + + D +
Sbjct: 88 IDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIV 147
Query: 181 KFHEGHIRSIDFHPL-------------EFLLATGSADRTVKFWDLETFELIGSTRPEVT 227
+ + +HP EF++ + + + L ++
Sbjct: 148 STRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAP 207
Query: 228 GVHAITFHPDGRTLFSGFDDNLKVYSWEPVICHDSVDMGWSTLGDLCINDGKLLGCSFYR 287
+ + R + + V DS D S L D+ G +F
Sbjct: 208 FLADGGWDSSHRYFMTAA------NNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVH 261
Query: 288 NSVGIWVA 295
G +
Sbjct: 262 PKYGPVWS 269
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 50.3 bits (119), Expect = 7e-07
Identities = 14/129 (10%), Positives = 28/129 (21%), Gaps = 10/129 (7%)
Query: 150 FTPDGRW--VVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRT 207
D V+ + + D + K++ L D
Sbjct: 26 NDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYAV-HISRMSASGRYLLVIGRDAR 84
Query: 208 VKFWDLETFELIGSTRPEVTGVHA-----ITFHPDGRTLFSG--FDDNLKVYSWEPVICH 260
+ DL E ++ + R +G + + E +
Sbjct: 85 IDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPK 144
Query: 261 DSVDMGWST 269
V T
Sbjct: 145 QIVSTRGMT 153
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 42.2 bits (98), Expect = 3e-04
Identities = 18/140 (12%), Positives = 36/140 (25%), Gaps = 24/140 (17%)
Query: 60 PVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFA--- 116
PV S + + L G + K V L G ++ HP
Sbjct: 266 PVWSTSHLGDGSISLIGTDPKNHPQYA---WKKVAELQGQGGGSLFIKTHPKSSHLYVDT 322
Query: 117 ----SGCMDTNLKIWDIRKKGCIHTYKGHT---------RGINTIRFTPDGRWVV----- 158
+ ++ ++D++ + + + + G V
Sbjct: 323 TFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWN 382
Query: 159 SGGFDNVVKVWDLTAGKLLH 178
+ + V D KL
Sbjct: 383 GKNDSSALVVVDDKTLKLKA 402
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 42.2 bits (98), Expect = 3e-04
Identities = 21/168 (12%), Positives = 37/168 (22%), Gaps = 27/168 (16%)
Query: 92 MVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFT 151
R V + + T+ K + +G G I+
Sbjct: 253 PGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTH 312
Query: 152 PDGRWVV-------SGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHP----LEF--- 197
P + V V+DL + + E+
Sbjct: 313 PKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKR 372
Query: 198 -------LLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDG 238
+ + + D +T +L V IT P G
Sbjct: 373 GDEVWFSVWNGKNDSSALVVVDDKTLKLKA----VVKDPRLIT--PTG 414
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Score = 54.1 bits (128), Expect = 4e-08
Identities = 22/154 (14%), Positives = 46/154 (29%), Gaps = 3/154 (1%)
Query: 115 FASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWV-VSGGFDNVVKVWDLTA 173
+ + N+ + D+ T +PDG V V+ N V + D
Sbjct: 5 YIANSESDNISVIDVTSNKVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTAT 63
Query: 174 GKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAIT 233
++ + + T A T+ D + + G+ + + +
Sbjct: 64 NNVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKS-PLGLA 122
Query: 234 FHPDGRTLFSGFDDNLKVYSWEPVICHDSVDMGW 267
PDG+ L+ + + V V +
Sbjct: 123 LSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSV 156
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Score = 52.6 bits (124), Expect = 1e-07
Identities = 14/89 (15%), Positives = 20/89 (22%), Gaps = 2/89 (2%)
Query: 98 GHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWV 157
S + + D I TPDG+ V
Sbjct: 200 AAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVG-PDPAGIAVTPDGKKV 258
Query: 158 -VSGGFDNVVKVWDLTAGKLLHDFKFHEG 185
V+ F N V V D + +
Sbjct: 259 YVALSFCNTVSVIDTATNTITATMAVGKN 287
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Score = 52.2 bits (123), Expect = 1e-07
Identities = 11/74 (14%), Positives = 25/74 (33%), Gaps = 3/74 (4%)
Query: 197 FLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLF--SGFDDNLKVYSW 254
F S + D+ + ++ T P + PDG ++ + +++ +
Sbjct: 3 FAYIANSESDNISVIDVTSNKVTA-TIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDT 61
Query: 255 EPVICHDSVDMGWS 268
+V G S
Sbjct: 62 ATNNVIATVPAGSS 75
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Score = 49.9 bits (117), Expect = 7e-07
Identities = 31/253 (12%), Positives = 67/253 (26%), Gaps = 3/253 (1%)
Query: 75 AGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEF-FASGCMDTNLKIWDIRKKG 133
A + + I + D+ +K+ T+ SN P G + + ++ I D
Sbjct: 7 ANSESDNISVIDVTSNKVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNN 65
Query: 134 CIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFH 193
I T + + V+ + + V D T+ + K + +
Sbjct: 66 VIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGK-SPLGLALS 124
Query: 194 PLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGFDDNLKVYS 253
P L + + + +T I PDG ++ D++ +
Sbjct: 125 PDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISV 184
Query: 254 WEPVICHDSVDMGWSTLGDLCINDGKLLGCSFYRNSVGIWVADVSHVEPYGVGAPEPDQS 313
+ V + + + + + A P
Sbjct: 185 IDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP 244
Query: 314 ICTEVKFNPPGSH 326
+ P G
Sbjct: 245 DPAGIAVTPDGKK 257
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Score = 47.9 bits (112), Expect = 3e-06
Identities = 38/267 (14%), Positives = 77/267 (28%), Gaps = 7/267 (2%)
Query: 7 KLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAF 66
K+ + +N I + + V++ + ++ SSP
Sbjct: 23 KVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAVS 82
Query: 67 DSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKI 126
+ + + ++ + + D + + T + + P G+
Sbjct: 83 PDGKQVYVTNMASSTLSVIDTTSNTVAGT-VKTGKSPLGLALSPDGKKLYVTNNGDKTVS 141
Query: 127 WDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGH 186
+ R I TPDG V FD++ T + D E
Sbjct: 142 VINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAA 201
Query: 187 IRSIDFHPLEFLLATGSAD---RTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLF- 242
I +P + D TV D T ++ P I PDG+ ++
Sbjct: 202 PSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITA-RIPVGPDPAGIAVTPDGKKVYV 260
Query: 243 -SGFDDNLKVYSWEPVICHDSVDMGWS 268
F + + V ++ +G +
Sbjct: 261 ALSFCNTVSVIDTATNTITATMAVGKN 287
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} Length = 441 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Score = 48.4 bits (115), Expect = 3e-06
Identities = 19/95 (20%), Positives = 30/95 (31%), Gaps = 5/95 (5%)
Query: 150 FTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHP-LEFLLATGSADRTV 208
F D G N K L + + H HI D ++L A+ V
Sbjct: 40 FNVDS-ATGWG-ITNESKEI-LGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKANTRV 96
Query: 209 KFWDLETFELIGSTR-PEVTGVHAITFHPDGRTLF 242
L+ + T P V +H + +T +
Sbjct: 97 ARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNY 131
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} Length = 441 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Score = 45.7 bits (108), Expect = 2e-05
Identities = 22/169 (13%), Positives = 40/169 (23%), Gaps = 33/169 (19%)
Query: 105 AVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGR-WVVSGGFD 163
G F G + + + + + +PDG+ ++ +G
Sbjct: 222 IAAAVKAGNFKTIG-DSKVPVVDGRGESEFTRYIPVP-KNPHGLNTSPDGKYFIANGKLS 279
Query: 164 NVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLE-------------FLLATGSADRTVKF 210
V V + KL F+ +I P T D V
Sbjct: 280 PTVSVIAID--KLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRGNAYTTLFIDSQVCK 337
Query: 211 WDLE-TFELIGSTRPEVTG--------------VHAITFHPDGRTLFSG 244
W++ + R + DG+ L
Sbjct: 338 WNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGKWLVVL 386
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} Length = 441 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Score = 44.9 bits (106), Expect = 4e-05
Identities = 27/281 (9%), Positives = 67/281 (23%), Gaps = 42/281 (14%)
Query: 71 VLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIR 130
+G G +++ + + + + F+ G + + +I
Sbjct: 12 YGFWSGGHQGEVRVLGVPSMRELMRIP---------VFNVDSAT-GWGITNESKEILGGD 61
Query: 131 KKGCIHTYKGHTRGINTIRFTPDGRWV-VSGGFDNVVKVWDLTAGKLLHDFKFHEGH-IR 188
++ H I+ DG+++ ++ + V L K I
Sbjct: 62 QQY--LNGDCHHPHISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIH 119
Query: 189 SIDFHP---LEFLLATGS----------------ADRTVKFWDLETFELIGSTRPEVTGV 229
+ ++ + D ET ++ + +
Sbjct: 120 GLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQVIVD-GNL 178
Query: 230 HAITFHPDGRTLFSGFDDNLKVYSWEPV--ICHDSVDMGWSTLGDLCINDGKLLGCSFYR 287
G+ S ++ + D V + + G
Sbjct: 179 DNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFK----TI 234
Query: 288 NSVGIWVADVSHVEPYGVGAPEPDQSICTEVKFNPPGSHSL 328
+ V D + P P +P G + +
Sbjct: 235 GDSKVPVVDGRGESEFTRYIPVPKNPHGLNT--SPDGKYFI 273
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Score = 46.0 bits (107), Expect = 1e-05
Identities = 25/282 (8%), Positives = 55/282 (19%), Gaps = 30/282 (10%)
Query: 5 GYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDS- 63
L + V V + + + + +V + I ++ S+ S
Sbjct: 26 ALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSL 85
Query: 64 --VAFDSAEVLVLA-----GASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFA 116
++ D V G + L + + + +
Sbjct: 86 THISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVP 145
Query: 117 SGCMDTNLKIWDIRKKGCIHTYKGHT--------RGINTIRFTPDGRWVVSGGFDNVVKV 168
+ D + R + V V
Sbjct: 146 ALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWE 205
Query: 169 WDLTAGK---------LLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLET---F 216
G + +F L A + + +
Sbjct: 206 LKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSV 265
Query: 217 ELIGSTRPEVTGVHAITFHPDGRTLFSG--FDDNLKVYSWEP 256
+P T G+ L + ++ VY
Sbjct: 266 LSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVG 307
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Score = 44.4 bits (103), Expect = 5e-05
Identities = 14/116 (12%), Positives = 34/116 (29%), Gaps = 6/116 (5%)
Query: 158 VSGGFDNVVKVWDLTAGKLLHDFKF--HEGHIRSIDFHP-LEFLLATGSADRTVKFWDLE 214
++ + VW+L L + G ++ + P +L + V + +
Sbjct: 8 IASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIA 67
Query: 215 TFELIGSTRPE---VTGVHAITFHPDGRTLFSGFDDNLKVYSWEPVICHDSVDMGW 267
+ + E + I+ G+ +F G + V +
Sbjct: 68 PDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDV 123
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Score = 43.3 bits (100), Expect = 1e-04
Identities = 13/84 (15%), Positives = 24/84 (28%), Gaps = 6/84 (7%)
Query: 196 EFLLATGSADRTVKFWDLET---FELIGSTRPEVTGVHAITFHPDGRTLFSG--FDDNLK 250
+ + + + W+L L V + PD R L+ G + +
Sbjct: 4 QTVYIASPESQQIHVWNLNHEGALTLT-QVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVL 62
Query: 251 VYSWEPVICHDSVDMGWSTLGDLC 274
Y P + + G L
Sbjct: 63 AYRIAPDDGALTFAAESALPGSLT 86
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} Length = 260 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 39.5 bits (90), Expect = 0.001
Identities = 25/216 (11%), Positives = 54/216 (25%), Gaps = 2/216 (0%)
Query: 33 TGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKM 92
G + V L T ++ GL P +A D A + + + V+ L ++
Sbjct: 32 EGMYGRVVKLATGSTGTTVLPFNGLYQPQG-LAVDGAGTVYVTDFNNRVVTLAAGSNNQT 90
Query: 93 VRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTP 152
V G + G + + + + K + +
Sbjct: 91 VLPFDGLNYPEG-LAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDN 149
Query: 153 DGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWD 212
G V+ +N V + + + I + T V
Sbjct: 150 SGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLL 209
Query: 213 LETFELIGSTRPEVTGVHAITFHPDGRTLFSGFDDN 248
+ + A+ D + ++
Sbjct: 210 AGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGND 245
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} Length = 314 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Score = 38.5 bits (88), Expect = 0.003
Identities = 19/129 (14%), Positives = 39/129 (30%), Gaps = 12/129 (9%)
Query: 126 IWDIRKKGCIHTYKGHTRGINTIRFTPDG-----RWVVSGGFDNVVKVWDLTAGKLLHDF 180
I+ G + + N I + +V+ + +D+ + +
Sbjct: 155 IYCFTTDGQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENK 214
Query: 181 KF-------HEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAIT 233
K HEG +DF LL ++ + + + R +
Sbjct: 215 KVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLH 274
Query: 234 FHPDGRTLF 242
F P +T+F
Sbjct: 275 FKPQTKTIF 283
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 269 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Score = 38.3 bits (87), Expect = 0.003
Identities = 15/117 (12%), Positives = 28/117 (23%), Gaps = 4/117 (3%)
Query: 82 IKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGH 141
+ ++ R N A I
Sbjct: 153 VYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSS 212
Query: 142 TRGINTIRFTPDGRWVV---SGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPL 195
T T P+G V+ S G +V+ + G+ +G ++ + P
Sbjct: 213 TFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKARLPATDGQVKFPAWSPY 268
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} Length = 302 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Score = 38.1 bits (87), Expect = 0.004
Identities = 40/263 (15%), Positives = 74/263 (28%), Gaps = 42/263 (15%)
Query: 135 IHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHP 194
I ++ +T + + PDG V+ ++ +T EG + + F
Sbjct: 21 ITSFPVNTF-LENLASAPDGTIFVTNHEVG--EIVSITPDGNQQIHATVEGKVSGLAFTS 77
Query: 195 LEFLLATGSADRTVKFWDL---ETFELIGSTRPEVTGVHAITFHPDGRTLFSGFDDNLK- 250
L+ATG ++ L + T P+ ++ IT D + L +
Sbjct: 78 NGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIW 137
Query: 251 --------------------VYSWEPVICHDSVDMGWSTLGDLCINDGKLLGC-SFYRNS 289
S + + + L LL +
Sbjct: 138 LIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFLYVSNTEKMLLLRIPVDSTDK 197
Query: 290 VGIWVADVSHVEPYGVGAPEPDQSIC-------TEVKFNPPGSHSLEKVGIIGRSTSGFR 342
G V A + + ++ + V+ P S ++ I
Sbjct: 198 PGEPEIFVEQTNIDDF-AFDVEGNLYGATHIYNSVVRIAPDRSTTI----IAQAEQGVIG 252
Query: 343 STSP--DYETKDIKTIYVDSTGG 363
ST+ D IYV + GG
Sbjct: 253 STAVAFGQTEGDCTAIYVVTNGG 275
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1074 | |||
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 100.0 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 100.0 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 100.0 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 100.0 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 100.0 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 100.0 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 100.0 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 100.0 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 100.0 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 100.0 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 100.0 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 99.98 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.98 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.97 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.97 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.96 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.96 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.96 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.95 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.95 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.95 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.95 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.95 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.94 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.94 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.93 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.92 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.92 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.9 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.88 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.88 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.88 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.88 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.86 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.86 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.8 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.75 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.72 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.66 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.63 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.57 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 99.52 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 99.49 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 99.47 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.45 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 99.4 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 99.36 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 99.35 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 99.35 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 99.35 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 99.34 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 99.27 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 99.26 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 99.06 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 99.04 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 99.01 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 98.98 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 98.94 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 98.78 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 98.69 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 98.67 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 98.6 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 98.53 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 98.44 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 98.2 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 98.18 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 98.16 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 97.89 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 97.59 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 97.56 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 97.51 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 97.4 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 97.33 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 97.2 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 96.6 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 96.5 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 96.41 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 96.28 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 95.84 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 95.21 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 94.94 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 94.35 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 93.22 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 92.82 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 91.46 | |
| d1xipa_ | 381 | Nucleoporin NUP159 {Baker's yeast (Saccharomyces c | 91.37 | |
| d1xipa_ | 381 | Nucleoporin NUP159 {Baker's yeast (Saccharomyces c | 90.8 | |
| d1zgka1 | 288 | Kelch-like ECH-associated protein 1, KEAP1 {Human | 89.79 | |
| d1zgka1 | 288 | Kelch-like ECH-associated protein 1, KEAP1 {Human | 88.57 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 80.71 |
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=7e-41 Score=284.91 Aligned_cols=288 Identities=21% Similarity=0.366 Sum_probs=254.5
Q ss_pred CCCCEEEEEECCCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCE-----EEEEECCCCCEEEEEECCCCCEEEEEE
Q ss_conf 667227998447998799999128993999997899099998799933-----799507998947999938999999998
Q 001462 3 KRGYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTA-----LMSLCGLSSPVDSVAFDSAEVLVLAGA 77 (1074)
Q Consensus 3 ktG~~v~~L~gHss~VtsIafSPdg~~lLaTGs~DGtI~IWDi~t~k~-----l~sl~~hs~~VtsIafSpdg~~LatGs 77 (1074)
+..+.++.+ .|.+.|.|++|+|++ ++|++|+ ||.|+|||+..... ......|...|.+++|+|++++|++++
T Consensus 40 ~~~~~~~~~-~H~~~V~~v~fs~~g-~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~ 116 (337)
T d1gxra_ 40 RHARQINTL-NHGEVVCAVTISNPT-RHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGG 116 (337)
T ss_dssp SEEEEEEEE-CCSSCCCEEEECSSS-SEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEE
T ss_pred CCCEEEEEC-CCCCCEEEEEECCCC-CEEEEEE-CCEEEEEECCCCCCCCEEEEEEECCCCCCEEEEEECCCCCEEEEEE
T ss_conf 875499987-999928999998999-9999997-9988997736776331168764048899689999867998898861
Q ss_pred CCCEEEEEECCC--CEEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCC
Q ss_conf 699199998699--906999807899838999937998999997898099998899907999817998748999968999
Q 001462 78 STGVIKLWDLEE--SKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGR 155 (1074)
Q Consensus 78 ~DG~I~IWDl~s--gk~i~tl~~h~~~VtsIafSPdg~~LaSgs~DGsI~IWDi~sg~~i~~lk~h~~~VssIafSPdG~ 155 (1074)
.||.|++||+.. .+....+..|...+.++.|+|++.++++++.|+.|.+|++.++.+......|...+.+++|++++.
T Consensus 117 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~ 196 (337)
T d1gxra_ 117 EASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGT 196 (337)
T ss_dssp SSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSS
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 23321111111111111111111111111111111111111111111111111111111111111111111012344432
Q ss_pred EEEEEECCCEEEEEECCCCCEEEEEEECCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEEE
Q ss_conf 99999779949999989990689963048875899975999699999689939999889970887517998884799991
Q 001462 156 WVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFH 235 (1074)
Q Consensus 156 ~LvSgs~DGsI~IWDl~tgk~i~~l~~h~g~ItsLafSPdg~lLaTGs~DGtI~IWDl~tge~i~~l~~~~~~ItsIafS 235 (1074)
++++++.|+.+++||+++++.+..+. +.+.|.+++|+|++.+|++++.|+.+++||+...+.. ....|...|.+++|+
T Consensus 197 ~~~~~~~d~~v~i~d~~~~~~~~~~~-~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~-~~~~~~~~i~~v~~s 274 (337)
T d1gxra_ 197 KLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-QLHLHESCVLSLKFA 274 (337)
T ss_dssp EEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE-EECCCSSCEEEEEEC
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCC-CCCCEEEEEECCCCCCCCEECCCCCCCCCCCCCCCCC-CCCCCCCCCCEEEEC
T ss_conf 11223566553211111100000246-6661579997153030000002564211111111100-001245654169998
Q ss_pred CCCCEEEEEE-CCCEEEEEECCCEEEECCCCCCCEEEEEEECCCCEEEEEECCCEEEEEEC
Q ss_conf 6998999997-99499999368723201026876145799459999999987992999994
Q 001462 236 PDGRTLFSGF-DDNLKVYSWEPVICHDSVDMGWSTLGDLCINDGKLLGCSFYRNSVGIWVA 295 (1074)
Q Consensus 236 PDG~~LasGs-d~~I~Iwdl~s~~~~~~i~~~~s~~~~l~spDGklLatgs~DGsI~IWDl 295 (1074)
|++++|++++ ++.+++|++..+...........+....+++++++|++++.||.|+||++
T Consensus 275 ~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~s~D~~I~vWdl 335 (337)
T d1gxra_ 275 YCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp TTSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred CCCCEEEEEECCCEEEEEECCCCCEEEECCCCCCEEEEEEECCCCEEEEEECCCEEEEEEE
T ss_conf 9999999994899699998999979999269998799999279999999908996999977
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=6.2e-39 Score=271.89 Aligned_cols=290 Identities=22% Similarity=0.420 Sum_probs=265.9
Q ss_pred CCCEEEEEECCCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEE
Q ss_conf 67227998447998799999128993999997899099998799933799507998947999938999999998699199
Q 001462 4 RGYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIK 83 (1074)
Q Consensus 4 tG~~v~~L~gHss~VtsIafSPdg~~lLaTGs~DGtI~IWDi~t~k~l~sl~~hs~~VtsIafSpdg~~LatGs~DG~I~ 83 (1074)
.......|.||.+.|++++|+|++ .+|++|+.||.|+|||+.+++.+..+.+|...|.+++|++++.+++.+..++.+.
T Consensus 6 ~~~~~~~L~GH~~~I~~l~~sp~~-~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~ 84 (317)
T d1vyhc1 6 RPPEKYALSGHRSPVTRVIFHPVF-SVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIK 84 (317)
T ss_dssp CSSCSCEEECCSSCEEEEEECSSS-SEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCC
T ss_pred CCCCCEEECCCCCCEEEEEECCCC-CEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEEECCCCCCCCCCCCCCCC
T ss_conf 898448985888876899993898-9999993899299998999979999957888677776301111011111111101
Q ss_pred EEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECC
Q ss_conf 99869990699980789983899993799899999789809999889990799981799874899996899999999779
Q 001462 84 LWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFD 163 (1074)
Q Consensus 84 IWDl~sgk~i~tl~~h~~~VtsIafSPdg~~LaSgs~DGsI~IWDi~sg~~i~~lk~h~~~VssIafSPdG~~LvSgs~D 163 (1074)
+|+.........+..|...+.++.|+++++.+++++.|+.+.+||+.++..+..+..|...+.+++|++++.+|++++.|
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 164 (317)
T d1vyhc1 85 LWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSND 164 (317)
T ss_dssp EEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred CCCCCCCCCCCCCCCCCCCCEEEECCCCCCEEEEECCCCCEEEEECCCCEEEEEECCCCCCCEEEECCCCCCEEEEEECC
T ss_conf 11001111111100000000000016998557765267523575114430346871677763000016679999999279
Q ss_pred CEEEEEECCCCCEEEEEEECCCCEEEEEECCCC--------------------CEEEEEECCCEEEEEECCCCCEEEEEC
Q ss_conf 949999989990689963048875899975999--------------------699999689939999889970887517
Q 001462 164 NVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLE--------------------FLLATGSADRTVKFWDLETFELIGSTR 223 (1074)
Q Consensus 164 GsI~IWDl~tgk~i~~l~~h~g~ItsLafSPdg--------------------~lLaTGs~DGtI~IWDl~tge~i~~l~ 223 (1074)
+.|++|+...++....+..|...+.++.|+|++ .++++++.|+.|++|++.+++++..+.
T Consensus 165 ~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~ 244 (317)
T d1vyhc1 165 QTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLV 244 (317)
T ss_dssp SCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred CEEEEEEECCCEEEEEEECCCCCCEEEEEEECCCCCEEECCCCCEEEEECCCCCEEEECCCCCEEEEEECCCCCEEEEEE
T ss_conf 82999751254034788247787337998632564111034563034302588614751699789998889996889996
Q ss_pred CCCCCEEEEEEECCCCEEEEEE-CCCEEEEEECCCEEEECCCCCCC-EEEEEEECCCCEEEEEECCCEEEEEE
Q ss_conf 9988847999916998999997-99499999368723201026876-14579945999999998799299999
Q 001462 224 PEVTGVHAITFHPDGRTLFSGF-DDNLKVYSWEPVICHDSVDMGWS-TLGDLCINDGKLLGCSFYRNSVGIWV 294 (1074)
Q Consensus 224 ~~~~~ItsIafSPDG~~LasGs-d~~I~Iwdl~s~~~~~~i~~~~s-~~~~l~spDGklLatgs~DGsI~IWD 294 (1074)
.|...+.+++|+|++.+|++|+ ++.|++|++........+..+.. +....+.+++++|++++.||.|+|||
T Consensus 245 ~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd 317 (317)
T d1vyhc1 245 GHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317 (317)
T ss_dssp CCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred CCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEC
T ss_conf 8899879999879999999997989499999999919999928999889999949999999992899499829
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=7.2e-39 Score=271.47 Aligned_cols=286 Identities=21% Similarity=0.407 Sum_probs=237.2
Q ss_pred EEEEECCCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEE------------------CCCCCEEEEEECCC
Q ss_conf 799844799879999912899399999789909999879993379950------------------79989479999389
Q 001462 8 LQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLC------------------GLSSPVDSVAFDSA 69 (1074)
Q Consensus 8 v~~L~gHss~VtsIafSPdg~~lLaTGs~DGtI~IWDi~t~k~l~sl~------------------~hs~~VtsIafSpd 69 (1074)
+....+|.+.|+|++|+|+| ++|++|+ |+.|+||++.+++.+..+. .|...|.+++|+|+
T Consensus 55 l~~~~~H~~~V~~l~fs~dg-~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~ 132 (388)
T d1erja_ 55 LHKSLDHTSVVCCVKFSNDG-EYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPD 132 (388)
T ss_dssp EEEEEECSSCCCEEEECTTS-SEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTT
T ss_pred EEEECCCCCCEEEEEECCCC-CEEEEEE-CCEEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCC
T ss_conf 07607999968999999999-9999994-994899981364057663166544324432111014677898899998899
Q ss_pred CCEEEEEECCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEEECCCCCEEEEE
Q ss_conf 99999998699199998699906999807899838999937998999997898099998899907999817998748999
Q 001462 70 EVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIR 149 (1074)
Q Consensus 70 g~~LatGs~DG~I~IWDl~sgk~i~tl~~h~~~VtsIafSPdg~~LaSgs~DGsI~IWDi~sg~~i~~lk~h~~~VssIa 149 (1074)
+++|++|+.||.|++|+...++....+.+|...|.++.|++++..+++++.++.+++||............+.. ..++.
T Consensus 133 ~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~ 211 (388)
T d1erja_ 133 GKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDG-VTTVA 211 (388)
T ss_dssp SSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSC-EEEEE
T ss_pred CCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCC-CCCCC
T ss_conf 98012134441111211111111111111111111101111111111222101565410111111000012454-42112
Q ss_pred ECC-CCCEEEEEECCCEEEEEECCCCCEEEEEE-------ECCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCC----
Q ss_conf 968-99999999779949999989990689963-------048875899975999699999689939999889970----
Q 001462 150 FTP-DGRWVVSGGFDNVVKVWDLTAGKLLHDFK-------FHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFE---- 217 (1074)
Q Consensus 150 fSP-dG~~LvSgs~DGsI~IWDl~tgk~i~~l~-------~h~g~ItsLafSPdg~lLaTGs~DGtI~IWDl~tge---- 217 (1074)
+.+ ++.+|++++.||.|++|+..++.....+. .|.+.|.+++|+|++.+|++++.||.|++||+....
T Consensus 212 ~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~ 291 (388)
T d1erja_ 212 VSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSD 291 (388)
T ss_dssp ECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC--------
T ss_pred CCCCCCCEEEEECCCCEEEEEECCCCCCCEEECCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCCC
T ss_conf 36887875899738981999634557300010244333457789878999979999999997899289875157764321
Q ss_pred --------EEEEECCCCCCEEEEEEECCCCEEEEEEC-CCEEEEEECCCEEEECCCCCCCEEEEEE-------ECCCCEE
Q ss_conf --------88751799888479999169989999979-9499999368723201026876145799-------4599999
Q 001462 218 --------LIGSTRPEVTGVHAITFHPDGRTLFSGFD-DNLKVYSWEPVICHDSVDMGWSTLGDLC-------INDGKLL 281 (1074)
Q Consensus 218 --------~i~~l~~~~~~ItsIafSPDG~~LasGsd-~~I~Iwdl~s~~~~~~i~~~~s~~~~l~-------spDGklL 281 (1074)
.......|...+.+++|+|++.+|++|+. +.|++|++..+.....+..+...+..+. .+++.+|
T Consensus 292 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~~V~~~~~~~~~~~spd~~~l 371 (388)
T d1erja_ 292 SKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVF 371 (388)
T ss_dssp -------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEE
T ss_pred CCCCCCCCEEEECCCCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEEECCCCCCCCCCEE
T ss_conf 01344420011012455327899988999999999698979999999996999996889978999984674258999999
Q ss_pred EEEECCCEEEEEECC
Q ss_conf 999879929999947
Q 001462 282 GCSFYRNSVGIWVAD 296 (1074)
Q Consensus 282 atgs~DGsI~IWDld 296 (1074)
++|+.||.|+||++.
T Consensus 372 ~s~s~Dg~I~iW~~~ 386 (388)
T d1erja_ 372 ATGSGDCKARIWKYK 386 (388)
T ss_dssp EEEETTSEEEEEEEE
T ss_pred EEEECCCEEEEEEEE
T ss_conf 999189979997621
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=2.4e-38 Score=267.96 Aligned_cols=244 Identities=14% Similarity=0.196 Sum_probs=214.3
Q ss_pred CCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCC--EEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCE
Q ss_conf 799879999912899399999789909999879993--379950799894799993899999999869919999869990
Q 001462 14 HSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPT--ALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESK 91 (1074)
Q Consensus 14 Hss~VtsIafSPdg~~lLaTGs~DGtI~IWDi~t~k--~l~sl~~hs~~VtsIafSpdg~~LatGs~DG~I~IWDl~sgk 91 (1074)
+.++|+|++|+|++ .+|++|+.||.|+||+...++ ....+.+|..+|.+++|+|++++|++++.|+.|++||+..+.
T Consensus 6 ~~~pIt~~~~s~dg-~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~ 84 (371)
T d1k8kc_ 6 LVEPISCHAWNKDR-TQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRT 84 (371)
T ss_dssp CSSCCCEEEECTTS-SEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTE
T ss_pred CCCCEEEEEECCCC-CEEEEEECCCEEEEEECCCCCEEEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEEECCCC
T ss_conf 99883899998999-99999948898999988899789999955889988899997999999999799939998620332
Q ss_pred EE--EEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCEE----EEEEECCCCCEEEEEECCCCCEEEEEECCCE
Q ss_conf 69--99807899838999937998999997898099998899907----9998179987489999689999999977994
Q 001462 92 MV--RTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGC----IHTYKGHTRGINTIRFTPDGRWVVSGGFDNV 165 (1074)
Q Consensus 92 ~i--~tl~~h~~~VtsIafSPdg~~LaSgs~DGsI~IWDi~sg~~----i~~lk~h~~~VssIafSPdG~~LvSgs~DGs 165 (1074)
.. ..+..|...|.+++|+|++++|++++.|+.+++|++..... ......|...|.+++|+|++.+|++|+.|+.
T Consensus 85 ~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~ 164 (371)
T d1k8kc_ 85 WKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFK 164 (371)
T ss_dssp EEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCE
T ss_conf 11001223221100011111112110000025763025442033433111001011122211111111111000134767
Q ss_pred EEEEECCCC------------------CEEEEEEECCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCC
Q ss_conf 999998999------------------06899630488758999759996999996899399998899708875179988
Q 001462 166 VKVWDLTAG------------------KLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVT 227 (1074)
Q Consensus 166 I~IWDl~tg------------------k~i~~l~~h~g~ItsLafSPdg~lLaTGs~DGtI~IWDl~tge~i~~l~~~~~ 227 (1074)
|++|+.... ........|.+.+.+++|+|++.+|++++.|+.|++||+..+..+..+..+..
T Consensus 165 v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~ 244 (371)
T d1k8kc_ 165 CRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETL 244 (371)
T ss_dssp EEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSC
T ss_pred EEEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEEECCCCCCCCCCCCCCCEEEEEECCCCEEEEECCCC
T ss_conf 99984015764310012211111111011244047667478987512332100001478605886410121000001466
Q ss_pred CEEEEEEECCCCEEEEEECCCEEEEEECCCE
Q ss_conf 8479999169989999979949999936872
Q 001462 228 GVHAITFHPDGRTLFSGFDDNLKVYSWEPVI 258 (1074)
Q Consensus 228 ~ItsIafSPDG~~LasGsd~~I~Iwdl~s~~ 258 (1074)
+|.+++|++++.++++|.++.+.+|.++...
T Consensus 245 ~v~s~~fs~d~~~la~g~d~~~~~~~~~~~~ 275 (371)
T d1k8kc_ 245 PLLAVTFITESSLVAAGHDCFPVLFTYDSAA 275 (371)
T ss_dssp CEEEEEEEETTEEEEEETTSSCEEEEEETTT
T ss_pred CCEEEEECCCCCEEEEECCCCEEEEEEECCC
T ss_conf 5203654699979999819926787760898
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=2.2e-38 Score=268.29 Aligned_cols=282 Identities=15% Similarity=0.192 Sum_probs=243.3
Q ss_pred CCCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCEE
Q ss_conf 47998799999128993999997899099998799933799507998947999938999999998699199998699906
Q 001462 13 AHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKM 92 (1074)
Q Consensus 13 gHss~VtsIafSPdg~~lLaTGs~DGtI~IWDi~t~k~l~sl~~hs~~VtsIafSpdg~~LatGs~DG~I~IWDl~sgk~ 92 (1074)
.+.+.+.+++++|++ ..|+.+. ++.+.+|++.+......+.+|...|.+++|+|++++|++|+.||.|++||+..+..
T Consensus 15 ~~r~~~~~~a~~~~g-~~l~~~~-~~~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~ 92 (311)
T d1nr0a1 15 TARGTAVVLGNTPAG-DKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTH 92 (311)
T ss_dssp CCTTCCCCCEECTTS-SEEEEEE-TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTC
T ss_pred CCCCCEEEEEECCCC-CEEEEEE-CCEEEEEECCCCCEEEEECCCCCCEEEEEEECCCCEEECCCCCCEEEEEEEECCCC
T ss_conf 778875999996998-9999996-99999999999966179747888889999948999672255673674663101111
Q ss_pred --EEEEECCCCCEEEEEECCCCCEEEEEEC--CCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCE-EEEEECCCEEE
Q ss_conf --9998078998389999379989999978--980999988999079998179987489999689999-99997799499
Q 001462 93 --VRTLTGHKSNCTAVEFHPFGEFFASGCM--DTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRW-VVSGGFDNVVK 167 (1074)
Q Consensus 93 --i~tl~~h~~~VtsIafSPdg~~LaSgs~--DGsI~IWDi~sg~~i~~lk~h~~~VssIafSPdG~~-LvSgs~DGsI~ 167 (1074)
...+..|...|.+++|+|+++++++++. +..+.+|++..++....+.+|...|.+++|+|++.+ |++|+.||.|+
T Consensus 93 ~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~ 172 (311)
T d1nr0a1 93 ILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVA 172 (311)
T ss_dssp CEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCC
T ss_conf 00001343357543323331110001111221111111111111111111111111111111211101200011221111
Q ss_pred EEECCCCCEEEEEEECCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEC-------CCCCCEEEEEEECCCCE
Q ss_conf 99989990689963048875899975999699999689939999889970887517-------99888479999169989
Q 001462 168 VWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTR-------PEVTGVHAITFHPDGRT 240 (1074)
Q Consensus 168 IWDl~tgk~i~~l~~h~g~ItsLafSPdg~lLaTGs~DGtI~IWDl~tge~i~~l~-------~~~~~ItsIafSPDG~~ 240 (1074)
+||+++++....+..|...|.++.|+|++.++++++.|+.|++||...+.....+. .|...|.+++|+|++.+
T Consensus 173 i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~ 252 (311)
T d1nr0a1 173 IFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTK 252 (311)
T ss_dssp EEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCE
T ss_conf 11111111111111111111112347642212111111111000124464112221111111002465321024788999
Q ss_pred EEEEE-CCCEEEEEECCCEEEECCCCCCCE--EEEEEECCCCEEEEEECCCEEEEEECC
Q ss_conf 99997-994999993687232010268761--457994599999999879929999947
Q 001462 241 LFSGF-DDNLKVYSWEPVICHDSVDMGWST--LGDLCINDGKLLGCSFYRNSVGIWVAD 296 (1074)
Q Consensus 241 LasGs-d~~I~Iwdl~s~~~~~~i~~~~s~--~~~l~spDGklLatgs~DGsI~IWDld 296 (1074)
|++|+ |+.+++|++.++.+...+..+... ....+.+++.+|++++.||.|++||.+
T Consensus 253 l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~~~~~~~~~l~s~s~dG~i~~wd~d 311 (311)
T d1nr0a1 253 IASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPE 311 (311)
T ss_dssp EEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETT
T ss_pred EEEEECCCEEEEEECCCCCEEEEEECCCCCCCEEEEEEECCCEEEEEECCCEEEEEECC
T ss_conf 99993799699999999969999979998633299999519999999899979999588
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=3.3e-36 Score=253.74 Aligned_cols=288 Identities=24% Similarity=0.380 Sum_probs=252.2
Q ss_pred CCEEEEEECCCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEE
Q ss_conf 72279984479987999991289939999978990999987999337995079989479999389999999986991999
Q 001462 5 GYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKL 84 (1074)
Q Consensus 5 G~~v~~L~gHss~VtsIafSPdg~~lLaTGs~DGtI~IWDi~t~k~l~sl~~hs~~VtsIafSpdg~~LatGs~DG~I~I 84 (1074)
....+.|.||.+.|+|++|+|++ .+|++|+.||.|++||+.+++.+..+..|...|.+++|+|++.++++++.|+.+.+
T Consensus 45 ~~~~~tL~GH~~~I~~l~~s~~~-~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~ 123 (340)
T d1tbga_ 45 MRTRRTLRGHLAKIYAMHWGTDS-RLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSI 123 (340)
T ss_dssp CCEEEEECCCSSCEEEEEECTTS-SEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEE
T ss_pred EEEEEEECCCCCCEEEEEECCCC-CEEEEEECCCCEEEEECCCCEEEEEEECCCCCEEEEEEECCCEEEEEECCCCEEEC
T ss_conf 06527988878988899998999-99999978995556310210257997246533775676012114431013320101
Q ss_pred EECCCC----EEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEE
Q ss_conf 986999----0699980789983899993799899999789809999889990799981799874899996899999999
Q 001462 85 WDLEES----KMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSG 160 (1074)
Q Consensus 85 WDl~sg----k~i~tl~~h~~~VtsIafSPdg~~LaSgs~DGsI~IWDi~sg~~i~~lk~h~~~VssIafSPdG~~LvSg 160 (1074)
|+.... .....+.+|........+.. +..+.....+.....|.............+...+....+.+.+.+++++
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (340)
T d1tbga_ 124 YNLKTREGNVRVSRELAGHTGYLSCCRFLD-DNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSG 202 (340)
T ss_dssp EESSSSCSCCCEEEEECCCSSCEEEEEEEE-TTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred CCCCCCCCCCCCCEECCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEE
T ss_conf 332222122211100135421101111111-1111111244543200123221111123310157630012442126876
Q ss_pred ECCCEEEEEECCCCCEEEEEEECCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEC--CCCCCEEEEEEECCC
Q ss_conf 779949999989990689963048875899975999699999689939999889970887517--998884799991699
Q 001462 161 GFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTR--PEVTGVHAITFHPDG 238 (1074)
Q Consensus 161 s~DGsI~IWDl~tgk~i~~l~~h~g~ItsLafSPdg~lLaTGs~DGtI~IWDl~tge~i~~l~--~~~~~ItsIafSPDG 238 (1074)
+.|+.|++||+++++.+..+..|.+.|.+++|+|++.+|++++.||.|++|++........+. .+...+.+++|++++
T Consensus 203 ~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~ 282 (340)
T d1tbga_ 203 ACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSG 282 (340)
T ss_dssp ETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSS
T ss_pred ECCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCCEEEEEECCCC
T ss_conf 05736999999999488999578898589999799899999969996999752122111111122445745899998999
Q ss_pred CEEEEEE-CCCEEEEEECCCEEEECCCCCCC-EEEEEEECCCCEEEEEECCCEEEEEE
Q ss_conf 8999997-99499999368723201026876-14579945999999998799299999
Q 001462 239 RTLFSGF-DDNLKVYSWEPVICHDSVDMGWS-TLGDLCINDGKLLGCSFYRNSVGIWV 294 (1074)
Q Consensus 239 ~~LasGs-d~~I~Iwdl~s~~~~~~i~~~~s-~~~~l~spDGklLatgs~DGsI~IWD 294 (1074)
.+|++|+ ++.+++|++..+.....+..+.. +....+.+++.+|++|+.||.|+|||
T Consensus 283 ~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd 340 (340)
T d1tbga_ 283 RLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp CEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred CEEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEEECCCCEEEEECCCCEEEEEC
T ss_conf 9999997979899999999939899848999789999908999999990699799859
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3.7e-36 Score=253.40 Aligned_cols=283 Identities=18% Similarity=0.218 Sum_probs=242.0
Q ss_pred CEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCE-----EEEEEECCCCCEEEEEECCCCCEEEEEECCCE
Q ss_conf 3379950799894799993899999999869919999869990-----69998078998389999379989999978980
Q 001462 49 TALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESK-----MVRTLTGHKSNCTAVEFHPFGEFFASGCMDTN 123 (1074)
Q Consensus 49 k~l~sl~~hs~~VtsIafSpdg~~LatGs~DG~I~IWDl~sgk-----~i~tl~~h~~~VtsIafSPdg~~LaSgs~DGs 123 (1074)
+.+..+ .|...|.+++|++++.+|++|+ ||.|++||+..+. .......|...|.+++|+|++++|++++.||.
T Consensus 43 ~~~~~~-~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~ 120 (337)
T d1gxra_ 43 RQINTL-NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEAST 120 (337)
T ss_dssp EEEEEE-CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSE
T ss_pred EEEEEC-CCCCCEEEEEECCCCCEEEEEE-CCEEEEEECCCCCCCCEEEEEEECCCCCCEEEEEECCCCCEEEEEECCCC
T ss_conf 499987-9999289999989999999997-99889977367763311687640488996899998679988988612332
Q ss_pred EEEEECCCC--EEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEECCCCEEEEEECCCCCEEEE
Q ss_conf 999988999--079998179987489999689999999977994999998999068996304887589997599969999
Q 001462 124 LKIWDIRKK--GCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLAT 201 (1074)
Q Consensus 124 I~IWDi~sg--~~i~~lk~h~~~VssIafSPdG~~LvSgs~DGsI~IWDl~tgk~i~~l~~h~g~ItsLafSPdg~lLaT 201 (1074)
|++||+... .....+..|...+.+++|+|++.++++++.++.|.+|++.+++.......|...+.+++|++++..+++
T Consensus 121 i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~~~~ 200 (337)
T d1gxra_ 121 LSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWT 200 (337)
T ss_dssp EEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 11111111111111111111111111111111111111111111111111111111111111111110123444321122
Q ss_pred EECCCEEEEEECCCCCEEEEECCCCCCEEEEEEECCCCEEEEEE-CCCEEEEEECCCEEEECCCCCCCEEEEEEECCCCE
Q ss_conf 96899399998899708875179988847999916998999997-99499999368723201026876145799459999
Q 001462 202 GSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGF-DDNLKVYSWEPVICHDSVDMGWSTLGDLCINDGKL 280 (1074)
Q Consensus 202 Gs~DGtI~IWDl~tge~i~~l~~~~~~ItsIafSPDG~~LasGs-d~~I~Iwdl~s~~~~~~i~~~~s~~~~l~spDGkl 280 (1074)
++.|+.+++||+++++.+..+. +...|.+++|+|++.++++++ ++.+++|++..............+....+.+++++
T Consensus 201 ~~~d~~v~i~d~~~~~~~~~~~-~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~v~~s~~g~~ 279 (337)
T d1gxra_ 201 GGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKW 279 (337)
T ss_dssp EETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEECCCSSCEEEEEECTTSSE
T ss_pred CCCCCCCCCCCCCCCEEECCCC-CCCCEEEEEECCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCE
T ss_conf 3566553211111100000246-666157999715303000000256421111111110000124565416999899999
Q ss_pred EEEEECCCEEEEEECCCCCEEEEECCCCCCCCCCEEEEEECCCCCCCEEEEEEEECCCCCEEEE
Q ss_conf 9999879929999947993245312789999986319999699992104999896147606896
Q 001462 281 LGCSFYRNSVGIWVADVSHVEPYGVGAPEPDQSICTEVKFNPPGSHSLEKVGIIGRSTSGFRST 344 (1074)
Q Consensus 281 Latgs~DGsI~IWDld~~~l~~~~l~~~~~~~~~ItsVaFSPDGs~~La~vlavG~stG~lr~i 344 (1074)
|++++.||.|++|++..+..... ..+...+.+++|+|||+ .++.|..+|.++++
T Consensus 280 l~s~s~Dg~i~iwd~~~~~~~~~-----~~~~~~v~~~~~s~d~~-----~l~t~s~D~~I~vW 333 (337)
T d1gxra_ 280 FVSTGKDNLLNAWRTPYGASIFQ-----SKESSSVLSCDISVDDK-----YIVTGSGDKKATVY 333 (337)
T ss_dssp EEEEETTSEEEEEETTTCCEEEE-----EECSSCEEEEEECTTSC-----EEEEEETTSCEEEE
T ss_pred EEEEECCCEEEEEECCCCCEEEE-----CCCCCCEEEEEEECCCC-----EEEEEECCCEEEEE
T ss_conf 99994899699998999979999-----26999879999927999-----99999089969999
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.6e-35 Score=249.17 Aligned_cols=324 Identities=19% Similarity=0.310 Sum_probs=258.1
Q ss_pred EEEEEECCCCCE-EEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEE
Q ss_conf 279984479987-9999912899399999789909999879993379950799894799993899999999869919999
Q 001462 7 KLQEFVAHSANV-NCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLW 85 (1074)
Q Consensus 7 ~v~~L~gHss~V-tsIafSPdg~~lLaTGs~DGtI~IWDi~t~k~l~sl~~hs~~VtsIafSpdg~~LatGs~DG~I~IW 85 (1074)
+...|.||.+.| +|+.| ++ ++|++|+.||.|++||+.+++.+..+.+|..+|.+++|+++ .+|++++.||.|++|
T Consensus 4 ~~~tL~GH~~~vitc~~~--~~-~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw 79 (355)
T d1nexb2 4 QRTTLRGHMTSVITCLQF--ED-NYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVW 79 (355)
T ss_dssp EEEEEECCSSSCEEEEEE--ET-TEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETT-TEEEEEETTCCEEEE
T ss_pred CCEEECCCCCCCEEEEEE--CC-CEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEECCC-CEEEEEECCCCCCCC
T ss_conf 758889837886999998--89-99999918990999989999399999789998899998699-999999645244321
Q ss_pred ECCCCEEEEEEECCCCC--EEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEE-----------------------EC
Q ss_conf 86999069998078998--389999379989999978980999988999079998-----------------------17
Q 001462 86 DLEESKMVRTLTGHKSN--CTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTY-----------------------KG 140 (1074)
Q Consensus 86 Dl~sgk~i~tl~~h~~~--VtsIafSPdg~~LaSgs~DGsI~IWDi~sg~~i~~l-----------------------k~ 140 (1074)
++............... .....+.+++.++++++.|+.|++|++......... ..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (355)
T d1nexb2 80 DIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRG 159 (355)
T ss_dssp ETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEEC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEECCCCCEECCCCCCCEECCCEECCCCCCCEEEEEEE
T ss_conf 11111111111001111111111111232204554388868999856773001246520001000001123401210110
Q ss_pred CCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEECCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEE
Q ss_conf 99874899996899999999779949999989990689963048875899975999699999689939999889970887
Q 001462 141 HTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIG 220 (1074)
Q Consensus 141 h~~~VssIafSPdG~~LvSgs~DGsI~IWDl~tgk~i~~l~~h~g~ItsLafSPdg~lLaTGs~DGtI~IWDl~tge~i~ 220 (1074)
|...+. .+.+++.+++.+..|+.|++||+.+++.+..+..+...+.++.|++++.++++++.|+.|++|++.++..+.
T Consensus 160 ~~~~v~--~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~ 237 (355)
T d1nexb2 160 HMASVR--TVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMY 237 (355)
T ss_dssp CSSCEE--EEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEE
T ss_pred CCCCCC--CCCCCCCEEEEECCCCEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCEEEECCCCCCEEEEEECCCCCCCC
T ss_conf 022210--000256334421144204443013110001100012332111111210021012456368763012211111
Q ss_pred EECCCCCCEEEEEEECCCCEEEEE-ECCCEEEEEECCCEEEECCCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCC
Q ss_conf 517998884799991699899999-7994999993687232010268761457994599999999879929999947993
Q 001462 221 STRPEVTGVHAITFHPDGRTLFSG-FDDNLKVYSWEPVICHDSVDMGWSTLGDLCINDGKLLGCSFYRNSVGIWVADVSH 299 (1074)
Q Consensus 221 ~l~~~~~~ItsIafSPDG~~LasG-sd~~I~Iwdl~s~~~~~~i~~~~s~~~~l~spDGklLatgs~DGsI~IWDld~~~ 299 (1074)
.+..|...|.++.|++ .+|+++ .++.+++|+....................+.+++.++++| .||.|++||+..+.
T Consensus 238 ~~~~h~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g-~d~~i~vwd~~tg~ 314 (355)
T d1nexb2 238 TLQGHTALVGLLRLSD--KFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSG-SENQFNIYNLRSGK 314 (355)
T ss_dssp EECCCSSCCCEEEECS--SEEEEECTTSEEEEEETTTCCEEEEEECTTCCCCCEEEECSSEEEEE-ETTEEEEEETTTCC
T ss_pred CCCCCCCCCCCCCCCC--CEEEEEECCCCCCCCCCCCCCEECCCCCCCCEEEEEECCCCCEEEEE-ECCEEEEEECCCCC
T ss_conf 1111111111112321--00333201111111111111100012468822999984999899998-09979999999997
Q ss_pred EEEEECCCCCCCCCCEEEEEECCCCCCCEEEEEEEECCCCCEEEEECCC
Q ss_conf 2453127899999863199996999921049998961476068963577
Q 001462 300 VEPYGVGAPEPDQSICTEVKFNPPGSHSLEKVGIIGRSTSGFRSTSPDY 348 (1074)
Q Consensus 300 l~~~~l~~~~~~~~~ItsVaFSPDGs~~La~vlavG~stG~lr~ivpD~ 348 (1074)
...... .+|.+.|.+++|+|+ . +++.+..+|.....+.||
T Consensus 315 ~~~~~~---~~~~~~V~~v~~~~~-~-----~~~~~s~dg~~~l~~~df 354 (355)
T d1nexb2 315 LVHANI---LKDADQIWSVNFKGK-T-----LVAAVEKDGQSFLEILDF 354 (355)
T ss_dssp BCCSCT---TTTCSEEEEEEEETT-E-----EEEEEESSSCEEEEEEEC
T ss_pred EEEEEE---CCCCCCEEEEEECCC-E-----EEEEEECCCCEEEEEEEC
T ss_conf 988884---589998999998399-1-----999998989099999958
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=1.1e-35 Score=250.17 Aligned_cols=285 Identities=15% Similarity=0.190 Sum_probs=231.7
Q ss_pred CCEEEEEECCCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEE-CCCCCEEEEEECCCCCEEEEEECCCEEE
Q ss_conf 722799844799879999912899399999789909999879993379950-7998947999938999999998699199
Q 001462 5 GYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLC-GLSSPVDSVAFDSAEVLVLAGASTGVIK 83 (1074)
Q Consensus 5 G~~v~~L~gHss~VtsIafSPdg~~lLaTGs~DGtI~IWDi~t~k~l~sl~-~hs~~VtsIafSpdg~~LatGs~DG~I~ 83 (1074)
|...+.+.||.+.|+|++|+|++ ++|++|+.||.|++||+.+++....+. .|...|.+++|++++.++ +++.|+.++
T Consensus 2 g~~~~~~~GH~~~V~~l~~s~dg-~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~~~-~~~~d~~v~ 79 (299)
T d1nr0a2 2 GSIDQVRYGHNKAITALSSSADG-KTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLF-TVSWDDHLK 79 (299)
T ss_dssp TEEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEE-EEETTTEEE
T ss_pred CCCCEECCCCCCCCEEEEECCCC-CEEEEECCCCEEEEEECCCCCEEEEECCCCCCCEEEEEEECCCEEE-CCCCEEEEE
T ss_conf 86136848888782899997999-9999990899299999999968899837887748998840331121-023102688
Q ss_pred EEECCCCEE---EEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEE
Q ss_conf 998699906---99980789983899993799899999789809999889990799981799874899996899999999
Q 001462 84 LWDLEESKM---VRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSG 160 (1074)
Q Consensus 84 IWDl~sgk~---i~tl~~h~~~VtsIafSPdg~~LaSgs~DGsI~IWDi~sg~~i~~lk~h~~~VssIafSPdG~~LvSg 160 (1074)
+|+...... ......+...+.++.|++++.++++++ ++.+.+|+.. +..... ....+.+++|+|++.+++++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~-~~~i~~~~~~--~~~~~~--~~~~~~~~~~s~~~~~l~~g 154 (299)
T d1nr0a2 80 VVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAAC-YKHIAIYSHG--KLTEVP--ISYNSSCVALSNDKQFVAVG 154 (299)
T ss_dssp EECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEE-SSEEEEEETT--EEEEEE--CSSCEEEEEECTTSCEEEEE
T ss_pred EECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCC--CCCCCC--CCCCCCCCCCCCCCCCCCCC
T ss_conf 731677620111000111134432100112211111222-2222111111--111101--11123322111111111111
Q ss_pred ECCCEEEEEECCCCCEEE-EEEECCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEE---EECCCCCCEEEEEEEC
Q ss_conf 779949999989990689-963048875899975999699999689939999889970887---5179988847999916
Q 001462 161 GFDNVVKVWDLTAGKLLH-DFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIG---STRPEVTGVHAITFHP 236 (1074)
Q Consensus 161 s~DGsI~IWDl~tgk~i~-~l~~h~g~ItsLafSPdg~lLaTGs~DGtI~IWDl~tge~i~---~l~~~~~~ItsIafSP 236 (1074)
+.||.|.+||+.+++... ....|...|.+++|+|++.+|++++.|+.|++||+.++.... .+..|...|.+++|+|
T Consensus 155 ~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~ 234 (299)
T d1nr0a2 155 GQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSP 234 (299)
T ss_dssp ETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECT
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 11111111111111111111111111111111111111111111111111111111111111111111111111112466
Q ss_pred CCCEEEEEE-CCCEEEEEECCCEEEECC---CCCCCEEEEEEECCCCEEEEEECCCEEEEEECC
Q ss_conf 998999997-994999993687232010---268761457994599999999879929999947
Q 001462 237 DGRTLFSGF-DDNLKVYSWEPVICHDSV---DMGWSTLGDLCINDGKLLGCSFYRNSVGIWVAD 296 (1074)
Q Consensus 237 DG~~LasGs-d~~I~Iwdl~s~~~~~~i---~~~~s~~~~l~spDGklLatgs~DGsI~IWDld 296 (1074)
++.+|++|+ |+.+++|+++........ ......+..++++++.+|++++.||.|++||+.
T Consensus 235 ~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~s~D~~i~iWdl~ 298 (299)
T d1nr0a2 235 DNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNVP 298 (299)
T ss_dssp TSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETTEEEEEETTSCEEEEECC
T ss_pred CCCCEEEECCCCEEEEEECCCCCCCEEEEECCCCCCCEEEEEECCCCEEEEEECCCEEEEEECC
T ss_conf 6451388828997999989999731489834898896899997798999999289979999444
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=3.1e-36 Score=253.92 Aligned_cols=281 Identities=16% Similarity=0.186 Sum_probs=224.5
Q ss_pred CCCEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCEE--E
Q ss_conf 98947999938999999998699199998699906999807899838999937998999997898099998899907--9
Q 001462 58 SSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGC--I 135 (1074)
Q Consensus 58 s~~VtsIafSpdg~~LatGs~DG~I~IWDl~sgk~i~tl~~h~~~VtsIafSPdg~~LaSgs~DGsI~IWDi~sg~~--i 135 (1074)
.+.+..++++|++..|+.+. ++.|.+|++.+......+.+|...|.+++|+|++++|++|+.||.|++||+..+.. .
T Consensus 17 r~~~~~~a~~~~g~~l~~~~-~~~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~ 95 (311)
T d1nr0a1 17 RGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILK 95 (311)
T ss_dssp TTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEE
T ss_pred CCCEEEEEECCCCCEEEEEE-CCEEEEEECCCCCEEEEECCCCCCEEEEEEECCCCEEECCCCCCEEEEEEEECCCCCCC
T ss_conf 88759999969989999996-99999999999966179747888889999948999672255673674663101111000
Q ss_pred EEEECCCCCEEEEEECCCCCEEEEEEC--CCEEEEEECCCCCEEEEEEECCCCEEEEEECCCCC-EEEEEECCCEEEEEE
Q ss_conf 998179987489999689999999977--99499999899906899630488758999759996-999996899399998
Q 001462 136 HTYKGHTRGINTIRFTPDGRWVVSGGF--DNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEF-LLATGSADRTVKFWD 212 (1074)
Q Consensus 136 ~~lk~h~~~VssIafSPdG~~LvSgs~--DGsI~IWDl~tgk~i~~l~~h~g~ItsLafSPdg~-lLaTGs~DGtI~IWD 212 (1074)
..+..|...|.+++|+|++.+|++++. +..+.+|++.+++....+.+|...|.+++|+|++. .|++|+.|+.|++||
T Consensus 96 ~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d 175 (311)
T d1nr0a1 96 TTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFE 175 (311)
T ss_dssp EEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCC
T ss_conf 01343357543323331110001111221111111111111111111111111111111211101200011221111111
Q ss_pred CCCCCEEEEECCCCCCEEEEEEECCCCEEEEEE-CCCEEEEEECCCEEEECCCC--------CCCEEEEEEECCCCEEEE
Q ss_conf 899708875179988847999916998999997-99499999368723201026--------876145799459999999
Q 001462 213 LETFELIGSTRPEVTGVHAITFHPDGRTLFSGF-DDNLKVYSWEPVICHDSVDM--------GWSTLGDLCINDGKLLGC 283 (1074)
Q Consensus 213 l~tge~i~~l~~~~~~ItsIafSPDG~~LasGs-d~~I~Iwdl~s~~~~~~i~~--------~~s~~~~l~spDGklLat 283 (1074)
+++++....+..|...|.++.|+|++.++++++ ++.+.+|++........+.. ...+....+.+++++|++
T Consensus 176 ~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~t 255 (311)
T d1nr0a1 176 GPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIAS 255 (311)
T ss_dssp TTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEE
T ss_conf 11111111111111111112347642212111111111000124464112221111111002465321024788999999
Q ss_pred EECCCEEEEEECCCCCEEEEECCCCCCCCCCEEEEEECCCCCCCEEEEEEEECCCCCEEEEECC
Q ss_conf 9879929999947993245312789999986319999699992104999896147606896357
Q 001462 284 SFYRNSVGIWVADVSHVEPYGVGAPEPDQSICTEVKFNPPGSHSLEKVGIIGRSTSGFRSTSPD 347 (1074)
Q Consensus 284 gs~DGsI~IWDld~~~l~~~~l~~~~~~~~~ItsVaFSPDGs~~La~vlavG~stG~lr~ivpD 347 (1074)
|+.||.|+|||+..+......... ......+.++.|+ ++ .++.+...|.++++-||
T Consensus 256 gs~Dg~v~iwd~~t~~~~~~l~~~-~~~~~~~~~~~~~--~~-----~l~s~s~dG~i~~wd~d 311 (311)
T d1nr0a1 256 ASADKTIKIWNVATLKVEKTIPVG-TRIEDQQLGIIWT--KQ-----ALVSISANGFINFVNPE 311 (311)
T ss_dssp EETTSEEEEEETTTTEEEEEEECC-SSGGGCEEEEEEC--SS-----CEEEEETTCCEEEEETT
T ss_pred EECCCEEEEEECCCCCEEEEEECC-CCCCCEEEEEEEC--CC-----EEEEEECCCEEEEEECC
T ss_conf 937996999999999699999799-9863329999951--99-----99999899979999588
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.4e-34 Score=242.91 Aligned_cols=305 Identities=21% Similarity=0.308 Sum_probs=246.8
Q ss_pred EEEEEECCCEEEEEECCCCCE----EEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEEE--------
Q ss_conf 999997899099998799933----79950799894799993899999999869919999869990699980--------
Q 001462 30 FLITGGDDQKVNLWAIGKPTA----LMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLT-------- 97 (1074)
Q Consensus 30 lLaTGs~DGtI~IWDi~t~k~----l~sl~~hs~~VtsIafSpdg~~LatGs~DG~I~IWDl~sgk~i~tl~-------- 97 (1074)
..+.+..++...+|+...... +....+|...|+|++|+|+|++|++|+ |+.|++||+.+++.+..+.
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~ 108 (388)
T d1erja_ 30 DALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKD 108 (388)
T ss_dssp TTSEEECSSCEEEECTTSCCCEEEEEEEEEECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-------
T ss_pred CCCCCCCCCCEEEECCCCCCCEEEEEEEECCCCCCEEEEEECCCCCEEEEEE-CCEEEEEEECCCCEEEEECCCCCCCCC
T ss_conf 3224688970898688777620541076079999689999999999999994-994899981364057663166544324
Q ss_pred ----------CCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEE
Q ss_conf ----------7899838999937998999997898099998899907999817998748999968999999997799499
Q 001462 98 ----------GHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVK 167 (1074)
Q Consensus 98 ----------~h~~~VtsIafSPdg~~LaSgs~DGsI~IWDi~sg~~i~~lk~h~~~VssIafSPdG~~LvSgs~DGsI~ 167 (1074)
.|...|.+++|+|++++|++|+.||.|++|+...+..+..+.+|...|.++.|++++..+++++.++.++
T Consensus 109 ~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~ 188 (388)
T d1erja_ 109 PENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVR 188 (388)
T ss_dssp ----------CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred CCCCCCCCCCCCCCCEEEEEECCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEE
T ss_conf 43211101467789889999889998012134441111211111111111111111111101111111111222101565
Q ss_pred EEECCCCCEEEEEEECCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEC-------CCCCCEEEEEEECCCCE
Q ss_conf 99989990689963048875899975999699999689939999889970887517-------99888479999169989
Q 001462 168 VWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTR-------PEVTGVHAITFHPDGRT 240 (1074)
Q Consensus 168 IWDl~tgk~i~~l~~h~g~ItsLafSPdg~lLaTGs~DGtI~IWDl~tge~i~~l~-------~~~~~ItsIafSPDG~~ 240 (1074)
+||............+...+....+.+++.+|++++.|+.|++|+..++.....+. .|...|.++.|+|++.+
T Consensus 189 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~ 268 (388)
T d1erja_ 189 IWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQS 268 (388)
T ss_dssp EEETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSE
T ss_pred EEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCEEEEEECCCCCCCEEECCCCCCCCCCCCCEEEEEECCCCCE
T ss_conf 41011111100001245442112368878758997389819996345573000102443334577898789999799999
Q ss_pred EEEEE-CCCEEEEEECCCEEEEC-------------CCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCEEEEECC
Q ss_conf 99997-99499999368723201-------------02687614579945999999998799299999479932453127
Q 001462 241 LFSGF-DDNLKVYSWEPVICHDS-------------VDMGWSTLGDLCINDGKLLGCSFYRNSVGIWVADVSHVEPYGVG 306 (1074)
Q Consensus 241 LasGs-d~~I~Iwdl~s~~~~~~-------------i~~~~s~~~~l~spDGklLatgs~DGsI~IWDld~~~l~~~~l~ 306 (1074)
|++++ ++.+++|++........ ......+....+.+++++|++|+.||.|++||+..+......
T Consensus 269 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l-- 346 (388)
T d1erja_ 269 VVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLML-- 346 (388)
T ss_dssp EEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEE--
T ss_pred EEEEECCCCEEEEECCCCCCCCCCCCCCCCCEEEECCCCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEE--
T ss_conf 999978992898751577643210134442001101245532789998899999999969897999999999699999--
Q ss_pred CCCCCCCCEEEEEE------CCCCCCCEEEEEEEECCCCCEEEE
Q ss_conf 89999986319999------699992104999896147606896
Q 001462 307 APEPDQSICTEVKF------NPPGSHSLEKVGIIGRSTSGFRST 344 (1074)
Q Consensus 307 ~~~~~~~~ItsVaF------SPDGs~~La~vlavG~stG~lr~i 344 (1074)
.+|.+.|.+++| +|||. +++.|..+|.+++.
T Consensus 347 --~~H~~~V~~~~~~~~~~~spd~~-----~l~s~s~Dg~I~iW 383 (388)
T d1erja_ 347 --QGHRNSVISVAVANGSSLGPEYN-----VFATGSGDCKARIW 383 (388)
T ss_dssp --ECCSSCEEEEEECSSCTTCTTCE-----EEEEEETTSEEEEE
T ss_pred --ECCCCCEEEEEEECCCCCCCCCC-----EEEEEECCCEEEEE
T ss_conf --68899789999846742589999-----99999189979997
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=4.1e-35 Score=246.42 Aligned_cols=292 Identities=24% Similarity=0.440 Sum_probs=255.9
Q ss_pred EEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECC
Q ss_conf 99879993379950799894799993899999999869919999869990699980789983899993799899999789
Q 001462 42 LWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMD 121 (1074)
Q Consensus 42 IWDi~t~k~l~sl~~hs~~VtsIafSpdg~~LatGs~DG~I~IWDl~sgk~i~tl~~h~~~VtsIafSPdg~~LaSgs~D 121 (1074)
.|.. .+.....+.+|..+|++++|+|++.+|++|+.||.|++||+.+++.+..+..|...|.+++|++++.+++.+..+
T Consensus 2 ~w~p-~~~~~~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~ 80 (317)
T d1vyhc1 2 EWIP-RPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSAD 80 (317)
T ss_dssp CCCC-CSSCSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred CCCC-CCCCCEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEEECCCCCCCCCCCC
T ss_conf 3689-898448985888876899993898999999389929999899997999995788867777630111101111111
Q ss_pred CEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEECCCCEEEEEECCCCCEEEE
Q ss_conf 80999988999079998179987489999689999999977994999998999068996304887589997599969999
Q 001462 122 TNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLAT 201 (1074)
Q Consensus 122 GsI~IWDi~sg~~i~~lk~h~~~VssIafSPdG~~LvSgs~DGsI~IWDl~tgk~i~~l~~h~g~ItsLafSPdg~lLaT 201 (1074)
+.+.+|+.........+..|...+.++.|++++..+++++.|+.+.+||+.+++....+..|...+.+++|++++.+|++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 160 (317)
T d1vyhc1 81 MTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIAS 160 (317)
T ss_dssp SCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCEEEEECCCCCEEEEECCCCEEEEEECCCCCCCEEEECCCCCCEEEE
T ss_conf 11011100111111110000000000001699855776526752357511443034687167776300001667999999
Q ss_pred EECCCEEEEEECCCCCEEEEECCCCCCEEEEEEECCC--------------------CEEEEEE-CCCEEEEEECCCEEE
Q ss_conf 9689939999889970887517998884799991699--------------------8999997-994999993687232
Q 001462 202 GSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDG--------------------RTLFSGF-DDNLKVYSWEPVICH 260 (1074)
Q Consensus 202 Gs~DGtI~IWDl~tge~i~~l~~~~~~ItsIafSPDG--------------------~~LasGs-d~~I~Iwdl~s~~~~ 260 (1074)
++.|+.|++|++........+..+...+.++.|++++ .++++++ ++.+++|+.....+.
T Consensus 161 ~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~ 240 (317)
T d1vyhc1 161 CSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCL 240 (317)
T ss_dssp EETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEE
T ss_pred EECCCEEEEEEECCCEEEEEEECCCCCCEEEEEEECCCCCEEECCCCCEEEEECCCCCEEEECCCCCEEEEEECCCCCEE
T ss_conf 92798299975125403478824778733799863256411103456303430258861475169978999888999688
Q ss_pred ECCCCCCC-EEEEEEECCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCCCCCEEEEEECCCCCCCEEEEEEEECCCC
Q ss_conf 01026876-14579945999999998799299999479932453127899999863199996999921049998961476
Q 001462 261 DSVDMGWS-TLGDLCINDGKLLGCSFYRNSVGIWVADVSHVEPYGVGAPEPDQSICTEVKFNPPGSHSLEKVGIIGRSTS 339 (1074)
Q Consensus 261 ~~i~~~~s-~~~~l~spDGklLatgs~DGsI~IWDld~~~l~~~~l~~~~~~~~~ItsVaFSPDGs~~La~vlavG~stG 339 (1074)
..+..+.. +....+.+++++|++++.||.|++|++..+...... .+|.+.|++++|+|+|. .++.|..+|
T Consensus 241 ~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~----~~h~~~V~~~~~s~~~~-----~l~s~s~Dg 311 (317)
T d1vyhc1 241 MTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTL----NAHEHFVTSLDFHKTAP-----YVVTGSVDQ 311 (317)
T ss_dssp EEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEE----ECCSSCEEEEEECSSSS-----CEEEEETTS
T ss_pred EEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEE----CCCCCCEEEEEECCCCC-----EEEEEECCC
T ss_conf 999688998799998799999999979894999999999199999----28999889999949999-----999992899
Q ss_pred CEEE
Q ss_conf 0689
Q 001462 340 GFRS 343 (1074)
Q Consensus 340 ~lr~ 343 (1074)
.+++
T Consensus 312 ~i~i 315 (317)
T d1vyhc1 312 TVKV 315 (317)
T ss_dssp EEEE
T ss_pred EEEE
T ss_conf 4998
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=4.8e-33 Score=232.59 Aligned_cols=329 Identities=21% Similarity=0.371 Sum_probs=260.7
Q ss_pred CCCEEEEEECCCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEE
Q ss_conf 67227998447998799999128993999997899099998799933799507998947999938999999998699199
Q 001462 4 RGYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIK 83 (1074)
Q Consensus 4 tG~~v~~L~gHss~VtsIafSPdg~~lLaTGs~DGtI~IWDi~t~k~l~sl~~hs~~VtsIafSpdg~~LatGs~DG~I~ 83 (1074)
..++.+.|.||.+.|.+ +++++| ++|++|+.||.|+|||+.+++.+..+.+|...|.+++|+++ +|++++.|+.++
T Consensus 5 ~~~~~~~l~GH~~~V~s-~~~~~g-~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~~--~l~s~s~D~~~~ 80 (342)
T d2ovrb2 5 ELKSPKVLKGHDDHVIT-CLQFCG-NRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN--IIISGSTDRTLK 80 (342)
T ss_dssp CCCCCEEEECSTTSCEE-EEEEET-TEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETT--EEEEEETTSCEE
T ss_pred CCCCCEEECCCCCCEEE-EEEECC-CEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEECCC--CCCCCEECCCCC
T ss_conf 88758898886875099-999789-99999918990999989999799999488999899994798--632100000111
Q ss_pred EEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECC
Q ss_conf 99869990699980789983899993799899999789809999889990799981799874899996899999999779
Q 001462 84 LWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFD 163 (1074)
Q Consensus 84 IWDl~sgk~i~tl~~h~~~VtsIafSPdg~~LaSgs~DGsI~IWDi~sg~~i~~lk~h~~~VssIafSPdG~~LvSgs~D 163 (1074)
+|+............+...+....+. ...+..+..|+.+.+|+...+.....+........ .+......++.++.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~d 156 (342)
T d2ovrb2 81 VWNAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVR--CVQYDGRRVVSGAYD 156 (342)
T ss_dssp EEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEE--EEEECSSCEEEEETT
T ss_pred CCCCCCCCCEECCCCCCEEEEEEECC--CCCCCCCCCCEEEEEEECCCCCCEEEEECCCCCCE--EECCCCCEEEEECCC
T ss_conf 11111000000012333047652024--65221234440378740355630011100111100--000133302433589
Q ss_pred CEEEEEECCCCCEEEEEEECCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEEECCCCEEEE
Q ss_conf 94999998999068996304887589997599969999968993999988997088751799888479999169989999
Q 001462 164 NVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFS 243 (1074)
Q Consensus 164 GsI~IWDl~tgk~i~~l~~h~g~ItsLafSPdg~lLaTGs~DGtI~IWDl~tge~i~~l~~~~~~ItsIafSPDG~~Las 243 (1074)
+.|++||......+..+..|...+..+.+ ++.++++++.||.|++||+..++.+..+..|...+.++.+++ .+|++
T Consensus 157 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~--~~l~s 232 (342)
T d2ovrb2 157 FMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD--NILVS 232 (342)
T ss_dssp SCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEET--TEEEE
T ss_pred CEEEEEECCCCEEEEEECCCCCCCCCCCC--CCCEEEEEECCCEEEEEECCCCEEEEEECCCCCCEEEEECCC--CEEEE
T ss_conf 86999525234366787275444210068--999999995899399952556536567416653205770689--99999
Q ss_pred EE-CCCEEEEEECCCEEEECCCCCC--CEEEEEEECCCCEEEEEECCCEEEEEECCCCCEE-EEECCCCCCCCCCEEEEE
Q ss_conf 97-9949999936872320102687--6145799459999999987992999994799324-531278999998631999
Q 001462 244 GF-DDNLKVYSWEPVICHDSVDMGW--STLGDLCINDGKLLGCSFYRNSVGIWVADVSHVE-PYGVGAPEPDQSICTEVK 319 (1074)
Q Consensus 244 Gs-d~~I~Iwdl~s~~~~~~i~~~~--s~~~~l~spDGklLatgs~DGsI~IWDld~~~l~-~~~l~~~~~~~~~ItsVa 319 (1074)
++ ++.+++|+.........+.... ......+..++.++++++.||.|++|++..+... .+......++...|.+++
T Consensus 233 ~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~ 312 (342)
T d2ovrb2 233 GNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIR 312 (342)
T ss_dssp EETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEE
T ss_pred ECCCCEEEEEECCCCCCCCCCCCCCEEEECEEECCCCCCEEEEECCCCEEEEEECCCCCEEEEEECCCCCCCCCCEEEEE
T ss_conf 74898899986554422111221000110100001379844999089989999999997989986234789889789999
Q ss_pred ECCCCCCCEEEEEEEECCCCC--EEEEECCCC
Q ss_conf 969999210499989614760--689635776
Q 001462 320 FNPPGSHSLEKVGIIGRSTSG--FRSTSPDYE 349 (1074)
Q Consensus 320 FSPDGs~~La~vlavG~stG~--lr~ivpD~e 349 (1074)
|+|+|. +++.|...|. .+..+.||+
T Consensus 313 ~s~~~~-----~la~g~~dGt~~~~l~~~Df~ 339 (342)
T d2ovrb2 313 ASNTKL-----VCAVGSRNGTEETKLLVLDFD 339 (342)
T ss_dssp ECSSEE-----EEEEECSSSSSCCEEEEEECC
T ss_pred ECCCCC-----EEEEEECCCCCEEEEEEEECC
T ss_conf 879998-----999996899970489999389
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=2.7e-32 Score=227.55 Aligned_cols=286 Identities=18% Similarity=0.302 Sum_probs=244.2
Q ss_pred CCEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEE
Q ss_conf 93379950799894799993899999999869919999869990699980789983899993799899999789809999
Q 001462 48 PTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIW 127 (1074)
Q Consensus 48 ~k~l~sl~~hs~~VtsIafSpdg~~LatGs~DG~I~IWDl~sgk~i~tl~~h~~~VtsIafSPdg~~LaSgs~DGsI~IW 127 (1074)
.+...++.+|...|++++|+|++.+|++|+.||.|++||+.+++.+..+..|...|.+++|+|++.++++++.|+.+.+|
T Consensus 45 ~~~~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~ 124 (340)
T d1tbga_ 45 MRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIY 124 (340)
T ss_dssp CCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEE
T ss_pred EEEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEEECCCCCEEEEEEECCCEEEEEECCCCEEECC
T ss_conf 06527988878988899998999999999789955563102102579972465337756760121144310133201013
Q ss_pred ECCCC----EEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEECCCCEEEEEECCCCCEEEEEE
Q ss_conf 88999----07999817998748999968999999997799499999899906899630488758999759996999996
Q 001462 128 DIRKK----GCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGS 203 (1074)
Q Consensus 128 Di~sg----~~i~~lk~h~~~VssIafSPdG~~LvSgs~DGsI~IWDl~tgk~i~~l~~h~g~ItsLafSPdg~lLaTGs 203 (1074)
+.... .....+.+|........+. .+..+.....+.....+.............+...+....+.+.+.++++++
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (340)
T d1tbga_ 125 NLKTREGNVRVSRELAGHTGYLSCCRFL-DDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGA 203 (340)
T ss_dssp ESSSSCSCCCEEEEECCCSSCEEEEEEE-ETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred CCCCCCCCCCCCEECCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEE
T ss_conf 3222212221110013542110111111-111111112445432001232211111233101576300124421268760
Q ss_pred CCCEEEEEECCCCCEEEEECCCCCCEEEEEEECCCCEEEEEE-CCCEEEEEECCCEEEECCC---CCCCEEEEEEECCCC
Q ss_conf 899399998899708875179988847999916998999997-9949999936872320102---687614579945999
Q 001462 204 ADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGF-DDNLKVYSWEPVICHDSVD---MGWSTLGDLCINDGK 279 (1074)
Q Consensus 204 ~DGtI~IWDl~tge~i~~l~~~~~~ItsIafSPDG~~LasGs-d~~I~Iwdl~s~~~~~~i~---~~~s~~~~l~spDGk 279 (1074)
.|+.|++||+.+++.+..+..|...|.+++|+|++.+|++|+ ++.+++|++........+. ....+....+.+++.
T Consensus 204 ~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~ 283 (340)
T d1tbga_ 204 CDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGR 283 (340)
T ss_dssp TTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSSC
T ss_pred CCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCC
T ss_conf 57369999999994889995788985899997998999999699969997521221111111224457458999989999
Q ss_pred EEEEEECCCEEEEEECCCCCEEEEECCCCCCCCCCEEEEEECCCCCCCEEEEEEEECCCCCEEE
Q ss_conf 9999987992999994799324531278999998631999969999210499989614760689
Q 001462 280 LLGCSFYRNSVGIWVADVSHVEPYGVGAPEPDQSICTEVKFNPPGSHSLEKVGIIGRSTSGFRS 343 (1074)
Q Consensus 280 lLatgs~DGsI~IWDld~~~l~~~~l~~~~~~~~~ItsVaFSPDGs~~La~vlavG~stG~lr~ 343 (1074)
+|++|+.||.|++||+..+...... .+|.+.|.+++|+|||. .++.|..+|.+++
T Consensus 284 ~l~~g~~dg~i~iwd~~~~~~~~~~----~~H~~~V~~l~~s~d~~-----~l~s~s~Dg~v~i 338 (340)
T d1tbga_ 284 LLLAGYDDFNCNVWDALKADRAGVL----AGHDNRVSCLGVTDDGM-----AVATGSWDSFLKI 338 (340)
T ss_dssp EEEEEETTSCEEEEETTTCCEEEEE----CCCSSCEEEEEECTTSS-----CEEEEETTSCEEE
T ss_pred EEEEEECCCEEEEEECCCCCEEEEE----CCCCCCEEEEEEECCCC-----EEEEECCCCEEEE
T ss_conf 9999979798999999999398998----48999789999908999-----9999906997998
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=2.3e-32 Score=228.08 Aligned_cols=238 Identities=17% Similarity=0.240 Sum_probs=179.4
Q ss_pred CCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCE--EEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCEE
Q ss_conf 99894799993899999999869919999869990--6999807899838999937998999997898099998899907
Q 001462 57 LSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESK--MVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGC 134 (1074)
Q Consensus 57 hs~~VtsIafSpdg~~LatGs~DG~I~IWDl~sgk--~i~tl~~h~~~VtsIafSPdg~~LaSgs~DGsI~IWDi~sg~~ 134 (1074)
...+|+|++|+|++.+|++++.+|.|.+|++..++ .+..+.+|...|.+++|+|++++|++++.|+.|++||+..+..
T Consensus 6 ~~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~ 85 (371)
T d1k8kc_ 6 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTW 85 (371)
T ss_dssp CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEE
T ss_pred CCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEEECCCCC
T ss_conf 99883899998999999999488989999888997899999558899888999979999999997999399986203321
Q ss_pred E--EEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEE----EEEEECCCCEEEEEECCCCCEEEEEECCCEE
Q ss_conf 9--998179987489999689999999977994999998999068----9963048875899975999699999689939
Q 001462 135 I--HTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLL----HDFKFHEGHIRSIDFHPLEFLLATGSADRTV 208 (1074)
Q Consensus 135 i--~~lk~h~~~VssIafSPdG~~LvSgs~DGsI~IWDl~tgk~i----~~l~~h~g~ItsLafSPdg~lLaTGs~DGtI 208 (1074)
. ..+..|...+.+++|+|++++|++++.|+.+++|++...... .....|...|.+++|+|++.+|++|+.|+.|
T Consensus 86 ~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v 165 (371)
T d1k8kc_ 86 KPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKC 165 (371)
T ss_dssp EEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCEE
T ss_conf 10012232211000111111121100000257630254420334331110010111222111111111110001347679
Q ss_pred EEEECCCCC------------------EEEEECCCCCCEEEEEEECCCCEEEEEE-CCCEEEEEECCCEEEECCCCCCC-
Q ss_conf 999889970------------------8875179988847999916998999997-99499999368723201026876-
Q 001462 209 KFWDLETFE------------------LIGSTRPEVTGVHAITFHPDGRTLFSGF-DDNLKVYSWEPVICHDSVDMGWS- 268 (1074)
Q Consensus 209 ~IWDl~tge------------------~i~~l~~~~~~ItsIafSPDG~~LasGs-d~~I~Iwdl~s~~~~~~i~~~~s- 268 (1074)
++|+..... .+.....|...+.+++|+|+|.+|++++ ++.+.+|++........+..+..
T Consensus 166 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~ 245 (371)
T d1k8kc_ 166 RIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLP 245 (371)
T ss_dssp EEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCC
T ss_pred EEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEEECCCCCCCCCCCCCCCEEEEEECCCCEEEEECCCCC
T ss_conf 99840157643100122111111110112440476674789875123321000014786058864101210000014665
Q ss_pred EEEEEEECCCCEEEEEECCCEEEEEEC
Q ss_conf 145799459999999987992999994
Q 001462 269 TLGDLCINDGKLLGCSFYRNSVGIWVA 295 (1074)
Q Consensus 269 ~~~~l~spDGklLatgs~DGsI~IWDl 295 (1074)
+....|.+|+++|++| .|+.+.+|..
T Consensus 246 v~s~~fs~d~~~la~g-~d~~~~~~~~ 271 (371)
T d1k8kc_ 246 LLAVTFITESSLVAAG-HDCFPVLFTY 271 (371)
T ss_dssp EEEEEEEETTEEEEEE-TTSSCEEEEE
T ss_pred CEEEEECCCCCEEEEE-CCCCEEEEEE
T ss_conf 2036546999799998-1992678776
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=3.8e-32 Score=226.61 Aligned_cols=280 Identities=13% Similarity=0.152 Sum_probs=221.6
Q ss_pred CCCEEEEEEECCCCCEEEEEECCC-EEEEEECCCC--CEEEEEECCC-CCEEEEEECC--CCCEEEEEECCCEEEEEECC
Q ss_conf 998799999128993999997899-0999987999--3379950799-8947999938--99999999869919999869
Q 001462 15 SANVNCISIGKKACRFLITGGDDQ-KVNLWAIGKP--TALMSLCGLS-SPVDSVAFDS--AEVLVLAGASTGVIKLWDLE 88 (1074)
Q Consensus 15 ss~VtsIafSPdg~~lLaTGs~DG-tI~IWDi~t~--k~l~sl~~hs-~~VtsIafSp--dg~~LatGs~DG~I~IWDl~ 88 (1074)
.+.+.+++|+|++ ..|+.++.+. .++.|+.... .....+.+|. ..|++++|+| ++.+|++|+.||.|++||+.
T Consensus 17 ~~~~t~l~~~~~~-~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~ 95 (325)
T d1pgua1 17 RNFTTHLSYDPTT-NAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWT 95 (325)
T ss_dssp TTCCCCCEEETTT-TEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEE
T ss_pred CCCEEEEEECCCC-CEEEEEECCCEEEEEEECCCCCCCCEEEEECCCCCCEEEEEEEECCCCCEEEEEECCCCEEEEEEC
T ss_conf 9984799998997-999999699879999768888765028990789998899998117999799999489977985405
Q ss_pred CCE--------EEEEEECCCCCEEEEEECCCCCEEEEEEC--CCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCE-E
Q ss_conf 990--------69998078998389999379989999978--980999988999079998179987489999689999-9
Q 001462 89 ESK--------MVRTLTGHKSNCTAVEFHPFGEFFASGCM--DTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRW-V 157 (1074)
Q Consensus 89 sgk--------~i~tl~~h~~~VtsIafSPdg~~LaSgs~--DGsI~IWDi~sg~~i~~lk~h~~~VssIafSPdG~~-L 157 (1074)
.+. ....+..|...|.+++|+++++++++++. ++.+.+|+...+..+..+.+|...+.+++|+|++.+ +
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~ 175 (325)
T d1pgua1 96 FDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRS 175 (325)
T ss_dssp EEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEE
T ss_pred CCCCEEEEECCCCCCCCCCCCCEEEEEECCCCCCCCEEECCCCCEEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCEE
T ss_conf 88621565100254113656737799989998822010012440478885023311001200123432111123432068
Q ss_pred EEEECCCEEEEEECCCCCEEEEEE---ECCCCEEEEEECCC-CCEEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEE
Q ss_conf 999779949999989990689963---04887589997599-96999996899399998899708875179988847999
Q 001462 158 VSGGFDNVVKVWDLTAGKLLHDFK---FHEGHIRSIDFHPL-EFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAIT 233 (1074)
Q Consensus 158 vSgs~DGsI~IWDl~tgk~i~~l~---~h~g~ItsLafSPd-g~lLaTGs~DGtI~IWDl~tge~i~~l~~~~~~ItsIa 233 (1074)
++++.|+.+++||...++....+. .|...|.+++|+|+ +.+|++++.|+.|++||+.+++.+..+..|...+..+.
T Consensus 176 ~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~ 255 (325)
T d1pgua1 176 MTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGI 255 (325)
T ss_dssp EEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCE
T ss_pred EEEECCCCCCCCCCCCCCCCEECCCCCCCCCCCEEEEECCCCCEECCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCE
T ss_conf 88621112211112211000000001577775277630345310000112332101343001222111111111111100
Q ss_pred EE---CCCCEEEEEE-CCCEEEEEECCCEEEECCCCCCCEE----EEEEECCCCEEEEEECCCEEEEEEC
Q ss_conf 91---6998999997-9949999936872320102687614----5799459999999987992999994
Q 001462 234 FH---PDGRTLFSGF-DDNLKVYSWEPVICHDSVDMGWSTL----GDLCINDGKLLGCSFYRNSVGIWVA 295 (1074)
Q Consensus 234 fS---PDG~~LasGs-d~~I~Iwdl~s~~~~~~i~~~~s~~----~~l~spDGklLatgs~DGsI~IWDl 295 (1074)
|+ ++|.+|++++ |+.++||++....+...+..+.... ..+..+.+.+|++++.||.|++||+
T Consensus 256 ~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~vwdl 325 (325)
T d1pgua1 256 FALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL 325 (325)
T ss_dssp EEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEET
T ss_pred EEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEECCCCCCCEEEEEEECCCCEEEEEECCCEEEEEEC
T ss_conf 0000368999999958993999999999788999954874067699999889999999979999999979
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=8e-31 Score=217.77 Aligned_cols=286 Identities=19% Similarity=0.349 Sum_probs=186.3
Q ss_pred CCCCEEEEEECCCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCC--CEEEEEECCCCCEEEEEECCC
Q ss_conf 667227998447998799999128993999997899099998799933799507998--947999938999999998699
Q 001462 3 KRGYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSS--PVDSVAFDSAEVLVLAGASTG 80 (1074)
Q Consensus 3 ktG~~v~~L~gHss~VtsIafSPdg~~lLaTGs~DGtI~IWDi~t~k~l~sl~~hs~--~VtsIafSpdg~~LatGs~DG 80 (1074)
.++++++.|.+|.+.|.+++|++++ +|++|+.||.|++|+............... ......+.+++.++++++.|+
T Consensus 41 ~~~~~~~~l~~H~~~V~~l~~s~~~--~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 118 (355)
T d1nexb2 41 INKKFLLQLSGHDGGVWALKYAHGG--ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDN 118 (355)
T ss_dssp TTTEEEEEEECCSSCEEEEEEETTT--EEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTS
T ss_pred CCCCEEEEEECCCCCEEEEEECCCC--EEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCC
T ss_conf 9993999997899988999986999--99999645244321111111111110011111111111112322045543888
Q ss_pred EEEEEECCCCEEEEEE-----------------------ECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEE
Q ss_conf 1999986999069998-----------------------07899838999937998999997898099998899907999
Q 001462 81 VIKLWDLEESKMVRTL-----------------------TGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHT 137 (1074)
Q Consensus 81 ~I~IWDl~sgk~i~tl-----------------------~~h~~~VtsIafSPdg~~LaSgs~DGsI~IWDi~sg~~i~~ 137 (1074)
.|++|++......... ..|...+. .+.+++++++.+..|+.|++||+..+..+..
T Consensus 119 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~ 196 (355)
T d1nexb2 119 TLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVR--TVSGHGNIVVSGSYDNTLIVWDVAQMKCLYI 196 (355)
T ss_dssp EEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEE--EEEEETTEEEEEETTSCEEEEETTTTEEEEE
T ss_pred CEEEEECCCCCEECCCCCCCEECCCEECCCCCCCEEEEEEECCCCCC--CCCCCCCEEEEECCCCEEEEEECCCCCCEEE
T ss_conf 68999856773001246520001000001123401210110022210--0002563344211442044430131100011
Q ss_pred EECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEECCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCC
Q ss_conf 81799874899996899999999779949999989990689963048875899975999699999689939999889970
Q 001462 138 YKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFE 217 (1074)
Q Consensus 138 lk~h~~~VssIafSPdG~~LvSgs~DGsI~IWDl~tgk~i~~l~~h~g~ItsLafSPdg~lLaTGs~DGtI~IWDl~tge 217 (1074)
...+...+.++.|++++.++++++.|+.|++||..++..+..+.+|...|.++.|+ +.+|++++.||.|++||+.+..
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~~--~~~l~~~~~dg~i~iwd~~~~~ 274 (355)
T d1nexb2 197 LSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYS 274 (355)
T ss_dssp ECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEECCCSSCCCEEEEC--SSEEEEECTTSEEEEEETTTCC
T ss_pred EECCCCCCCCCCCCCCCEEEECCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCC--CCEEEEEECCCCCCCCCCCCCC
T ss_conf 00012332111111210021012456368763012211111111111111111232--1003332011111111111111
Q ss_pred EEEEECCCCCCEEE-EEEECCCCEEEEEECCCEEEEEECCCEEEEC-CCCCCCEEEEEEECCCCEEEEEECCCEEEEEEC
Q ss_conf 88751799888479-9991699899999799499999368723201-026876145799459999999987992999994
Q 001462 218 LIGSTRPEVTGVHA-ITFHPDGRTLFSGFDDNLKVYSWEPVICHDS-VDMGWSTLGDLCINDGKLLGCSFYRNSVGIWVA 295 (1074)
Q Consensus 218 ~i~~l~~~~~~Its-IafSPDG~~LasGsd~~I~Iwdl~s~~~~~~-i~~~~s~~~~l~spDGklLatgs~DGsI~IWDl 295 (1074)
..... |...+.. ..|++++.++++|+++.+++|+++.+++... +..+...+..+.+....++++++.||.+.||.+
T Consensus 275 ~~~~~--~~~~~~~~~~~~~~~~~l~~g~d~~i~vwd~~tg~~~~~~~~~~~~~V~~v~~~~~~~~~~~s~dg~~~l~~~ 352 (355)
T d1nexb2 275 RKFSY--HHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKTLVAAVEKDGQSFLEIL 352 (355)
T ss_dssp EEEEE--ECTTCCCCCEEEECSSEEEEEETTEEEEEETTTCCBCCSCTTTTCSEEEEEEEETTEEEEEEESSSCEEEEEE
T ss_pred EECCC--CCCCCEEEEEECCCCCEEEEEECCEEEEEECCCCCEEEEEECCCCCCEEEEEECCCEEEEEEECCCCEEEEEE
T ss_conf 00012--4688229999849998999980997999999999798888458999899999839919999989890999999
Q ss_pred C
Q ss_conf 7
Q 001462 296 D 296 (1074)
Q Consensus 296 d 296 (1074)
+
T Consensus 353 d 353 (355)
T d1nexb2 353 D 353 (355)
T ss_dssp E
T ss_pred E
T ss_conf 5
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=7.9e-30 Score=211.13 Aligned_cols=285 Identities=14% Similarity=0.127 Sum_probs=216.3
Q ss_pred CCEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEEE-CCCCCEEEEEECCCCCEEEEEECCCEEEE
Q ss_conf 93379950799894799993899999999869919999869990699980-78998389999379989999978980999
Q 001462 48 PTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLT-GHKSNCTAVEFHPFGEFFASGCMDTNLKI 126 (1074)
Q Consensus 48 ~k~l~sl~~hs~~VtsIafSpdg~~LatGs~DG~I~IWDl~sgk~i~tl~-~h~~~VtsIafSPdg~~LaSgs~DGsI~I 126 (1074)
|.....+.+|..+|++++|+|++++|++|+.||.|++||+.+++....+. .|...|.+++|+|++.+ ++++.|+.+++
T Consensus 2 g~~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~~-~~~~~d~~v~~ 80 (299)
T d1nr0a2 2 GSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDL-FTVSWDDHLKV 80 (299)
T ss_dssp TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCE-EEEETTTEEEE
T ss_pred CCCCEECCCCCCCCEEEEECCCCCEEEEECCCCEEEEEECCCCCEEEEECCCCCCCEEEEEEECCCEE-ECCCCEEEEEE
T ss_conf 86136848888782899997999999999089929999999996889983788774899884033112-10231026887
Q ss_pred EECCCCEE---EEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEECCCCEEEEEECCCCCEEEEEE
Q ss_conf 98899907---999817998748999968999999997799499999899906899630488758999759996999996
Q 001462 127 WDIRKKGC---IHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGS 203 (1074)
Q Consensus 127 WDi~sg~~---i~~lk~h~~~VssIafSPdG~~LvSgs~DGsI~IWDl~tgk~i~~l~~h~g~ItsLafSPdg~lLaTGs 203 (1074)
|+...... ......+...+.+++|++++.+++++. ++.+.+|+.. +..... ....+.+++|+|++.+|++++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~-~~~i~~~~~~--~~~~~~--~~~~~~~~~~s~~~~~l~~g~ 155 (299)
T d1nr0a2 81 VPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAAC-YKHIAIYSHG--KLTEVP--ISYNSSCVALSNDKQFVAVGG 155 (299)
T ss_dssp ECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEE-SSEEEEEETT--EEEEEE--CSSCEEEEEECTTSCEEEEEE
T ss_pred ECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCC--CCCCCC--CCCCCCCCCCCCCCCCCCCCC
T ss_conf 31677620111000111134432100112211111222-2222111111--111101--111233221111111111111
Q ss_pred CCCEEEEEECCCCCEEE-EECCCCCCEEEEEEECCCCEEEEEE-CCCEEEEEECCCEEEECC---CCCC-CEEEEEEECC
Q ss_conf 89939999889970887-5179988847999916998999997-994999993687232010---2687-6145799459
Q 001462 204 ADRTVKFWDLETFELIG-STRPEVTGVHAITFHPDGRTLFSGF-DDNLKVYSWEPVICHDSV---DMGW-STLGDLCIND 277 (1074)
Q Consensus 204 ~DGtI~IWDl~tge~i~-~l~~~~~~ItsIafSPDG~~LasGs-d~~I~Iwdl~s~~~~~~i---~~~~-s~~~~l~spD 277 (1074)
.|+.|++||+.+..... ....|...|.+++|+|++.+|++++ ++.+++|++......... ..+. .+....+.++
T Consensus 156 ~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~ 235 (299)
T d1nr0a2 156 QDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPD 235 (299)
T ss_dssp TTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTT
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 11111111111111111111111111111111111111111111111111111111111111111111111111124666
Q ss_pred CCEEEEEECCCEEEEEECCCCCEEEEECCCCCCCCCCEEEEEECCCCCCCEEEEEEEECCCCCEEEEE
Q ss_conf 99999998799299999479932453127899999863199996999921049998961476068963
Q 001462 278 GKLLGCSFYRNSVGIWVADVSHVEPYGVGAPEPDQSICTEVKFNPPGSHSLEKVGIIGRSTSGFRSTS 345 (1074)
Q Consensus 278 GklLatgs~DGsI~IWDld~~~l~~~~l~~~~~~~~~ItsVaFSPDGs~~La~vlavG~stG~lr~iv 345 (1074)
+.+|++++.||.|++|++............ ..+...+.++.|. ++. .++.+..+|.++..-
T Consensus 236 ~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~-~~~~~~v~~~~~~-~~~-----~l~s~s~D~~i~iWd 296 (299)
T d1nr0a2 236 NVRLATGSLDNSVIVWNMNKPSDHPIIIKG-AHAMSSVNSVIWL-NET-----TIVSAGQDSNIKFWN 296 (299)
T ss_dssp SSEEEEEETTSCEEEEETTCTTSCCEEETT-SSTTSCEEEEEEE-ETT-----EEEEEETTSCEEEEE
T ss_pred CCCEEEECCCCEEEEEECCCCCCCEEEEEC-CCCCCCEEEEEEC-CCC-----EEEEEECCCEEEEEE
T ss_conf 451388828997999989999731489834-8988968999977-989-----999992899799994
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.2e-30 Score=216.49 Aligned_cols=280 Identities=16% Similarity=0.175 Sum_probs=199.8
Q ss_pred CCEEEEEECCCCCEEEEEECCC-EEEEEECCCC--EEEEEEECCC-CCEEEEEECC--CCCEEEEEECCCEEEEEECCCC
Q ss_conf 8947999938999999998699-1999986999--0699980789-9838999937--9989999978980999988999
Q 001462 59 SPVDSVAFDSAEVLVLAGASTG-VIKLWDLEES--KMVRTLTGHK-SNCTAVEFHP--FGEFFASGCMDTNLKIWDIRKK 132 (1074)
Q Consensus 59 ~~VtsIafSpdg~~LatGs~DG-~I~IWDl~sg--k~i~tl~~h~-~~VtsIafSP--dg~~LaSgs~DGsI~IWDi~sg 132 (1074)
..+.+++|+|++..|+.++.+. .|+.|+.... .....+.+|. ..|++++|+| ++.++++|+.||.|++||+..+
T Consensus 18 ~~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~ 97 (325)
T d1pgua1 18 NFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFD 97 (325)
T ss_dssp TCCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEE
T ss_pred CCEEEEEECCCCCEEEEEECCCEEEEEEECCCCCCCCEEEEECCCCCCEEEEEEEECCCCCEEEEEECCCCEEEEEECCC
T ss_conf 98479999899799999969987999976888876502899078999889999811799979999948997798540588
Q ss_pred EE--------EEEEECCCCCEEEEEECCCCCEEEEEEC--CCEEEEEECCCCCEEEEEEECCCCEEEEEECCCCCE-EEE
Q ss_conf 07--------9998179987489999689999999977--994999998999068996304887589997599969-999
Q 001462 133 GC--------IHTYKGHTRGINTIRFTPDGRWVVSGGF--DNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFL-LAT 201 (1074)
Q Consensus 133 ~~--------i~~lk~h~~~VssIafSPdG~~LvSgs~--DGsI~IWDl~tgk~i~~l~~h~g~ItsLafSPdg~l-LaT 201 (1074)
.. ...+..|..+|.+++|++++.++++++. ++.+.+|+..+++.+..+..|...+.+++|+|++.+ +++
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~ 177 (325)
T d1pgua1 98 KESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMT 177 (325)
T ss_dssp GGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEE
T ss_pred CCEEEEECCCCCCCCCCCCCEEEEEECCCCCCCCEEECCCCCEEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCEEEE
T ss_conf 62156510025411365673779998999882201001244047888502331100120012343211112343206888
Q ss_pred EECCCEEEEEECCCCCEEEEE---CCCCCCEEEEEEECC-CCEEEEE-ECCCEEEEEECCCEEEECCCCCCCE----EEE
Q ss_conf 968993999988997088751---799888479999169-9899999-7994999993687232010268761----457
Q 001462 202 GSADRTVKFWDLETFELIGST---RPEVTGVHAITFHPD-GRTLFSG-FDDNLKVYSWEPVICHDSVDMGWST----LGD 272 (1074)
Q Consensus 202 Gs~DGtI~IWDl~tge~i~~l---~~~~~~ItsIafSPD-G~~LasG-sd~~I~Iwdl~s~~~~~~i~~~~s~----~~~ 272 (1074)
++.|+.+++|+....+..... ..+...|.+++|+|+ +.+++++ .++.+++|+.+.......+..+... ...
T Consensus 178 ~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s 257 (325)
T d1pgua1 178 VGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFA 257 (325)
T ss_dssp EETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEE
T ss_pred EECCCCCCCCCCCCCCCCEECCCCCCCCCCCEEEEECCCCCEECCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCEEE
T ss_conf 62111221111221100000000157777527763034531000011233210134300122211111111111110000
Q ss_pred EEECCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCCCCCEEEEEECCCCCCCEEEEEEEECCCCCEEEE
Q ss_conf 994599999999879929999947993245312789999986319999699992104999896147606896
Q 001462 273 LCINDGKLLGCSFYRNSVGIWVADVSHVEPYGVGAPEPDQSICTEVKFNPPGSHSLEKVGIIGRSTSGFRST 344 (1074)
Q Consensus 273 l~spDGklLatgs~DGsI~IWDld~~~l~~~~l~~~~~~~~~ItsVaFSPDGs~~La~vlavG~stG~lr~i 344 (1074)
..++|+++|++++.|+.|+|||+..+........ ..+...+..++|.+.++. .++.+..+|.++++
T Consensus 258 ~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~----~l~s~s~dg~i~vw 323 (325)
T d1pgua1 258 LSWLDSQKFATVGADATIRVWDVTTSKCVQKWTL--DKQQLGNQQVGVVATGNG----RIISLSLDGTLNFY 323 (325)
T ss_dssp EEESSSSEEEEEETTSEEEEEETTTTEEEEEEEC--CTTCGGGCEEEEEEEETT----EEEEEETTSCEEEE
T ss_pred EECCCCCEEEEEECCCEEEEEECCCCCEEEEEEE--CCCCCCCEEEEEEECCCC----EEEEEECCCEEEEE
T ss_conf 0036899999995899399999999978899995--487406769999988999----99999799999999
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.3e-28 Score=201.37 Aligned_cols=275 Identities=20% Similarity=0.406 Sum_probs=220.3
Q ss_pred CEEEEEECCCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEE
Q ss_conf 22799844799879999912899399999789909999879993379950799894799993899999999869919999
Q 001462 6 YKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLW 85 (1074)
Q Consensus 6 ~~v~~L~gHss~VtsIafSPdg~~lLaTGs~DGtI~IWDi~t~k~l~sl~~hs~~VtsIafSpdg~~LatGs~DG~I~IW 85 (1074)
+.++.+..|...|+|+.| ++ ++|++|+.||.|+|||+.+++.+..+.+|...|.++.| ++++|++|+.||.|.+|
T Consensus 6 ~~i~~~~~~~~~V~c~~~--d~-~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~ 80 (293)
T d1p22a2 6 QRIHCRSETSKGVYCLQY--DD-QKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVW 80 (293)
T ss_dssp CCEECCCSSCCCEEEEEC--CS-SEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEE
T ss_pred EEEECCCCCCCCEEEEEE--CC-CEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEC--CCCEEECCCCCCCCCCC
T ss_conf 898432899998899987--69-99999928993999999999199999267787763423--63002100111011000
Q ss_pred ECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCE---EEEEEECCCCCEEEEEECCCCCEEEEEEC
Q ss_conf 869990699980789983899993799899999789809999889990---79998179987489999689999999977
Q 001462 86 DLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKG---CIHTYKGHTRGINTIRFTPDGRWVVSGGF 162 (1074)
Q Consensus 86 Dl~sgk~i~tl~~h~~~VtsIafSPdg~~LaSgs~DGsI~IWDi~sg~---~i~~lk~h~~~VssIafSPdG~~LvSgs~ 162 (1074)
++..+........+.... ..+......++++..++.+.+|+..... ....+..|...+.++.+. ...+++++.
T Consensus 81 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~s~ 156 (293)
T d1p22a2 81 DVNTGEMLNTLIHHCEAV--LHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASG 156 (293)
T ss_dssp ESSSCCEEEEECCCCSCE--EEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEE--TTEEEEEET
T ss_pred CCCCCCCCCCCCCCCCCC--CCCCCCCCCEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCEEC--CCCCCCCCC
T ss_conf 002464100111111000--0111111000001356630686134454442121000113543110000--022011069
Q ss_pred CCEEEEEECCCCCEEEEEEECCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEEECCCCEEE
Q ss_conf 99499999899906899630488758999759996999996899399998899708875179988847999916998999
Q 001462 163 DNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLF 242 (1074)
Q Consensus 163 DGsI~IWDl~tgk~i~~l~~h~g~ItsLafSPdg~lLaTGs~DGtI~IWDl~tge~i~~l~~~~~~ItsIafSPDG~~La 242 (1074)
|+.|++||..+++.+..+.++...+..+.++ +.++++++.||.|++||+.+...+..+..+...+.. +.+++.+|+
T Consensus 157 d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~--~~~~~~~l~ 232 (293)
T d1p22a2 157 DRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRC--IRFDNKRIV 232 (293)
T ss_dssp TSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEE--EECCSSEEE
T ss_pred CCCEEEECCCCCCEEEEECCCCCCCCCCCCC--CCEEEEECCCCEEEEEECCCCEEEEEECCCCEEEEE--CCCCCEEEE
T ss_conf 9860410078883889971554453221689--875887658998999866556146652143100000--145410799
Q ss_pred EEE-CCCEEEEEECCC---------EEEECCCCCCCEEEEEEECCCCEEEEEECCCEEEEEE
Q ss_conf 997-994999993687---------2320102687614579945999999998799299999
Q 001462 243 SGF-DDNLKVYSWEPV---------ICHDSVDMGWSTLGDLCINDGKLLGCSFYRNSVGIWV 294 (1074)
Q Consensus 243 sGs-d~~I~Iwdl~s~---------~~~~~i~~~~s~~~~l~spDGklLatgs~DGsI~IWD 294 (1074)
+|+ ++.+++|++... .....+..+...+..+.+ ++.+|++++.||.|+|||
T Consensus 233 sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~-d~~~l~s~s~Dg~i~iWD 293 (293)
T d1p22a2 233 SGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF-DEFQIVSSSHDDTILIWD 293 (293)
T ss_dssp EEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE-CSSCEEECCSSSEEEEEC
T ss_pred EECCCCEEEEEECCCCCCCCCCCCCEEEEEECCCCCCEEEEEE-CCCEEEEEECCCEEEEEC
T ss_conf 9867997999988888644456775455784588998899997-199999992299899959
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.6e-28 Score=202.48 Aligned_cols=273 Identities=18% Similarity=0.215 Sum_probs=196.9
Q ss_pred EEEEECCCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCC------EEEEEECCCCCEEEEEEC------C-CCCEEE
Q ss_conf 799844799879999912899399999789909999879993------379950799894799993------8-999999
Q 001462 8 LQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPT------ALMSLCGLSSPVDSVAFD------S-AEVLVL 74 (1074)
Q Consensus 8 v~~L~gHss~VtsIafSPdg~~lLaTGs~DGtI~IWDi~t~k------~l~sl~~hs~~VtsIafS------p-dg~~La 74 (1074)
.....+|.+.|.++++++ +++++++.|+.|+||+..... .......|...+..+.+. . ++.+++
T Consensus 7 ~~~~~~H~~~I~~v~~~~---~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (393)
T d1sq9a_ 7 ANAGKAHDADIFSVSACN---SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVA 83 (393)
T ss_dssp EEESSCSSSCEEEEEECS---SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEE
T ss_pred EECCCCCCCCCEEEEEEC---CEEEEEECCCEEEEEECCCCCCCCCCCEEEEEEECCCCCEEEEEEEEECCCCCCCCEEE
T ss_conf 520876367127999969---99999979996998789878877654046765420477167666750015799876899
Q ss_pred EEECCCEEEEEECCCCEE---E--EEEE-----CCCCCEEEEEECCC-----CCEEEEEECCCEEEEEECCCCE------
Q ss_conf 998699199998699906---9--9980-----78998389999379-----9899999789809999889990------
Q 001462 75 AGASTGVIKLWDLEESKM---V--RTLT-----GHKSNCTAVEFHPF-----GEFFASGCMDTNLKIWDIRKKG------ 133 (1074)
Q Consensus 75 tGs~DG~I~IWDl~sgk~---i--~tl~-----~h~~~VtsIafSPd-----g~~LaSgs~DGsI~IWDi~sg~------ 133 (1074)
+++.||.|.+|++..... . .... .+...+..+.|.++ +.++++++.||.+.+|++....
T Consensus 84 s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~ 163 (393)
T d1sq9a_ 84 TTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSL 163 (393)
T ss_dssp EEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHT
T ss_pred EEECCCCEEEEECCCCCCEEEEECCCCCEEEECCCCCCEEEEEEECCCCCCCCCEEEEECCCCCEEEEEEECCCCCCCEE
T ss_conf 99489919999822898205651245632431157896689998447886542179998389819998740477534102
Q ss_pred ---------EEEE---EECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEE------ECCCCEEEEEECCC
Q ss_conf ---------7999---81799874899996899999999779949999989990689963------04887589997599
Q 001462 134 ---------CIHT---YKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFK------FHEGHIRSIDFHPL 195 (1074)
Q Consensus 134 ---------~i~~---lk~h~~~VssIafSPdG~~LvSgs~DGsI~IWDl~tgk~i~~l~------~h~g~ItsLafSPd 195 (1074)
.... ...+...+.+++|+|++ +|++|+.||.|++||+.+++.+..+. .|..+|.+++|+|+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd 242 (393)
T d1sq9a_ 164 TLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQ 242 (393)
T ss_dssp TTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSS
T ss_pred EEEECCCEECCCCEECCCCCCCCEEEEEECCCC-EEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCEEEECCCCCC
T ss_conf 331032000145100025789867899978999-8999938982999860233211000011111242563877004665
Q ss_pred CCEEEEEECCC---EEEEEECCCCCEEEEEC-------------CCCCCEEEEEEECCCCEEEEEE-CCCEEEEEECCCE
Q ss_conf 96999996899---39999889970887517-------------9988847999916998999997-9949999936872
Q 001462 196 EFLLATGSADR---TVKFWDLETFELIGSTR-------------PEVTGVHAITFHPDGRTLFSGF-DDNLKVYSWEPVI 258 (1074)
Q Consensus 196 g~lLaTGs~DG---tI~IWDl~tge~i~~l~-------------~~~~~ItsIafSPDG~~LasGs-d~~I~Iwdl~s~~ 258 (1074)
+.+|++|+.|+ .|++||+.+++.+..+. +|...|++++|+|++++|++++ |+.|++|+++++.
T Consensus 243 g~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~ 322 (393)
T d1sq9a_ 243 GSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKE 322 (393)
T ss_dssp TTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTE
T ss_pred CCEEEEECCCCCCCEEEECCCCCCEEEEEECCCCCCCCCEEEEECCCCCEEEECCCCCCCEEEEECCCCEEEEEECCCCC
T ss_conf 32011242898842100103532134443115666643102320235866600138988806987799989999999997
Q ss_pred EEECCCCCCCEE-----EEEEECCCCEEEEE
Q ss_conf 320102687614-----57994599999999
Q 001462 259 CHDSVDMGWSTL-----GDLCINDGKLLGCS 284 (1074)
Q Consensus 259 ~~~~i~~~~s~~-----~~l~spDGklLatg 284 (1074)
+...+..+...+ ...+.+++..++.+
T Consensus 323 ~~~~l~gH~~~v~~~~~~~~~~~~~~~~~~~ 353 (393)
T d1sq9a_ 323 RITTLNMHCDDIEIEEDILAVDEHGDSLAEP 353 (393)
T ss_dssp EEEEEECCGGGCSSGGGCCCBCTTSCBCSSC
T ss_pred EEEEECCCCCCCCCCCCEEEECCCCCEEEEC
T ss_conf 9999988687613773489999999999983
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.98 E-value=1.7e-26 Score=188.98 Aligned_cols=295 Identities=24% Similarity=0.366 Sum_probs=202.2
Q ss_pred EECCCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCC
Q ss_conf 98799933799507998947999938999999998699199998699906999807899838999937998999997898
Q 001462 43 WAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDT 122 (1074)
Q Consensus 43 WDi~t~k~l~sl~~hs~~VtsIafSpdg~~LatGs~DG~I~IWDl~sgk~i~tl~~h~~~VtsIafSPdg~~LaSgs~DG 122 (1074)
|+....+....+.+|...|.+ +++++|++|++|+.||.|++||+.+++++..+.+|...|.+++|++ ++|++++.|+
T Consensus 1 W~~~~~~~~~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~--~~l~s~s~D~ 77 (342)
T d2ovrb2 1 WRRGELKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRD--NIIISGSTDR 77 (342)
T ss_dssp HHHSCCCCCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEET--TEEEEEETTS
T ss_pred CCCCCCCCCEEECCCCCCEEE-EEEECCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEECC--CCCCCCEECC
T ss_conf 989988758898886875099-9997899999991899099998999979999948899989999479--8632100000
Q ss_pred EEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEECCCCEEEEEECCCCCEEEEE
Q ss_conf 09999889990799981799874899996899999999779949999989990689963048875899975999699999
Q 001462 123 NLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATG 202 (1074)
Q Consensus 123 sI~IWDi~sg~~i~~lk~h~~~VssIafSPdG~~LvSgs~DGsI~IWDl~tgk~i~~l~~h~g~ItsLafSPdg~lLaTG 202 (1074)
.+++|+............+...+....+. ...+..+..|+.+.+|+..+++....+........ .+.+....++.+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 153 (342)
T d2ovrb2 78 TLKVWNAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVR--CVQYDGRRVVSG 153 (342)
T ss_dssp CEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEE--EEEECSSCEEEE
T ss_pred CCCCCCCCCCCCEECCCCCCEEEEEEECC--CCCCCCCCCCEEEEEEECCCCCCEEEEECCCCCCE--EECCCCCEEEEE
T ss_conf 11111111000000012333047652024--65221234440378740355630011100111100--000133302433
Q ss_pred ECCCEEEEEECCCCCEEEEECCCCCCEEEEEEECCCCEEEEEE-CCCEEEEEECCCEEEECCCCCCCEEEEEEECCCCEE
Q ss_conf 6899399998899708875179988847999916998999997-994999993687232010268761457994599999
Q 001462 203 SADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGF-DDNLKVYSWEPVICHDSVDMGWSTLGDLCINDGKLL 281 (1074)
Q Consensus 203 s~DGtI~IWDl~tge~i~~l~~~~~~ItsIafSPDG~~LasGs-d~~I~Iwdl~s~~~~~~i~~~~s~~~~l~spDGklL 281 (1074)
+.|+.|++||......+..+..+...+.. +.+++.++++++ ++.+++|++...........+......+ .+++++|
T Consensus 154 ~~d~~i~~~d~~~~~~~~~~~~~~~~~~~--~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~-~~~~~~l 230 (342)
T d2ovrb2 154 AYDFMVKVWDPETETCLHTLQGHTNRVYS--LQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGM-ELKDNIL 230 (342)
T ss_dssp ETTSCEEEEEGGGTEEEEEECCCSSCEEE--EEECSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEE-EEETTEE
T ss_pred CCCCEEEEEECCCCEEEEEECCCCCCCCC--CCCCCCEEEEEECCCEEEEEECCCCEEEEEECCCCCCEEEE-ECCCCEE
T ss_conf 58986999525234366787275444210--06899999999589939995255653656741665320577-0689999
Q ss_pred EEEECCCEEEEEECCCCCEEEEECCCCCCCCCCEEEEEECCCCCCCEEEEEEEECCCCCEEEEECCCCCCCEEEEE
Q ss_conf 9998799299999479932453127899999863199996999921049998961476068963577643069986
Q 001462 282 GCSFYRNSVGIWVADVSHVEPYGVGAPEPDQSICTEVKFNPPGSHSLEKVGIIGRSTSGFRSTSPDYETKDIKTIY 357 (1074)
Q Consensus 282 atgs~DGsI~IWDld~~~l~~~~l~~~~~~~~~ItsVaFSPDGs~~La~vlavG~stG~lr~ivpD~et~eIv~i~ 357 (1074)
++++.||.|++|+............. ..+...+.++.|++ + .++.+...|.++ +.|.++++.+...
T Consensus 231 ~s~s~d~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~-----~~~s~s~Dg~i~--iwd~~tg~~i~~~ 296 (342)
T d2ovrb2 231 VSGNADSTVKIWDIKTGQCLQTLQGP-NKHQSAVTCLQFNK--N-----FVITSSDDGTVK--LWDLKTGEFIRNL 296 (342)
T ss_dssp EEEETTSCEEEEETTTCCEEEEECST-TSCSSCEEEEEECS--S-----EEEEEETTSEEE--EEETTTCCEEEEE
T ss_pred EEECCCCEEEEEECCCCCCCCCCCCC-CEEEECEEECCCCC--C-----EEEEECCCCEEE--EEECCCCCEEEEE
T ss_conf 99748988999865544221112210-00110100001379--8-----449990899899--9999999798998
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.98 E-value=1.2e-28 Score=203.32 Aligned_cols=268 Identities=16% Similarity=0.168 Sum_probs=191.3
Q ss_pred CCCEEEEEECCCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEE
Q ss_conf 67227998447998799999128993999997899099998799933799507998947999938999999998699199
Q 001462 4 RGYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIK 83 (1074)
Q Consensus 4 tG~~v~~L~gHss~VtsIafSPdg~~lLaTGs~DGtI~IWDi~t~k~l~sl~~hs~~VtsIafSpdg~~LatGs~DG~I~ 83 (1074)
.+++++.|.||.++|+|++|+| |++|+.||.|++|++.++ ...|...|.++.|++++ .+++++.|+.++
T Consensus 2 ~~~~i~~l~gH~~~I~~l~~s~-----l~sgs~Dg~v~~Wd~~~~-----~~~h~~~V~~~~~~~~~-~~~s~s~D~~v~ 70 (287)
T d1pgua2 2 HDEVLKTISGHNKGITALTVNP-----LISGSYDGRIMEWSSSSM-----HQDHSNLIVSLDNSKAQ-EYSSISWDDTLK 70 (287)
T ss_dssp EEEEEEEECCCSSCEEEEETTT-----TEEEETTSCEEETTTTEE-----ECCCCSCEEEEECCSTT-CCEEEETTTEEE
T ss_pred CCCEEEEECCCCCCEEEEEECC-----EEEEECCCEEEEEECCCC-----CCCCCCCEEEEEECCCC-EEEEEEECCCCC
T ss_conf 9603499988798649999895-----789848991999989998-----88877878999965997-289886101222
Q ss_pred EEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECC
Q ss_conf 99869990699980789983899993799899999789809999889990799981799874899996899999999779
Q 001462 84 LWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFD 163 (1074)
Q Consensus 84 IWDl~sgk~i~tl~~h~~~VtsIafSPdg~~LaSgs~DGsI~IWDi~sg~~i~~lk~h~~~VssIafSPdG~~LvSgs~D 163 (1074)
+|++...+ ....+..+.+++++..++++ .++.+.+|+...+..+..+..+ ..+ .++++++..+++++.+
T Consensus 71 ~w~~~~~~-------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~v~~~~ 139 (287)
T d1pgua2 71 VNGITKHE-------FGSQPKVASANNDGFTAVLT-NDDDLLILQSFTGDIIKSVRLN-SPG--SAVSLSQNYVAVGLEE 139 (287)
T ss_dssp ETTEEEEE-------CSSCEEEEEECSSSEEEEEE-TTSEEEEEETTTCCEEEEEECS-SCE--EEEEECSSEEEEEETT
T ss_pred CCCCCCCC-------CCCCEEEEEECCCCCEEEEE-ECCCCEEEECCCEEEEEECCCC-CEE--EEEECCCCCEEEECCC
T ss_conf 11111111-------12210146641678569996-0332100001100354310122-203--5652147511100022
Q ss_pred C-EEEEEECCCCCEEEEEE-ECCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEE-EECCCCCCEEEEEEECCCC-
Q ss_conf 9-49999989990689963-048875899975999699999689939999889970887-5179988847999916998-
Q 001462 164 N-VVKVWDLTAGKLLHDFK-FHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIG-STRPEVTGVHAITFHPDGR- 239 (1074)
Q Consensus 164 G-sI~IWDl~tgk~i~~l~-~h~g~ItsLafSPdg~lLaTGs~DGtI~IWDl~tge~i~-~l~~~~~~ItsIafSPDG~- 239 (1074)
+ .+++|++........+. .+.+.+.+++|+|++.+|++|+.||.|++||+.++.... .+..|...|.+++|+|.+.
T Consensus 140 ~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~ 219 (287)
T d1pgua2 140 GNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKG 219 (287)
T ss_dssp TSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC--
T ss_pred CCEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCEEEECCCCCC
T ss_conf 10002100012210001210247853699951676521101111110000002332110001111111100000136541
Q ss_pred ---------EEEEEE-CCCEEEEEECC-CEEEECCCCCCC-EEEEEEECCCCEEEEEECCCEEEEEE
Q ss_conf ---------999997-99499999368-723201026876-14579945999999998799299999
Q 001462 240 ---------TLFSGF-DDNLKVYSWEP-VICHDSVDMGWS-TLGDLCINDGKLLGCSFYRNSVGIWV 294 (1074)
Q Consensus 240 ---------~LasGs-d~~I~Iwdl~s-~~~~~~i~~~~s-~~~~l~spDGklLatgs~DGsI~IWD 294 (1074)
++++|+ |+.+++|+++. .........+.. +....+.+++ .|++++.||.|++|+
T Consensus 220 ~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~-~l~s~g~D~~v~iW~ 285 (287)
T d1pgua2 220 ANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-TLVSSGADACIKRWN 285 (287)
T ss_dssp ----CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETT-EEEEEETTSCEEEEE
T ss_pred CCCCCCCCCEEEEECCCCEEEEEECCCCCEEEEEECCCCCCEEEEEECCCC-EEEEEECCCEEEEEE
T ss_conf 001267887027664999599988899975899927878985899998999-899997999299999
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=2.4e-29 Score=207.92 Aligned_cols=289 Identities=13% Similarity=0.062 Sum_probs=206.8
Q ss_pred CEEEEEECCCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCEE---EEEECCCCCEEEEEECCC-CCEEEEEECCCE
Q ss_conf 2279984479987999991289939999978990999987999337---995079989479999389-999999986991
Q 001462 6 YKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTAL---MSLCGLSSPVDSVAFDSA-EVLVLAGASTGV 81 (1074)
Q Consensus 6 ~~v~~L~gHss~VtsIafSPdg~~lLaTGs~DGtI~IWDi~t~k~l---~sl~~hs~~VtsIafSpd-g~~LatGs~DG~ 81 (1074)
+.++..++|++.|++|+|+|++ .+|++|+.||.|+|||+...... ....+|..+|.+++|+++ +.+|++|+.||.
T Consensus 2 ~~v~~~~~h~d~I~~l~fsp~~-~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~ 80 (342)
T d1yfqa_ 2 QIVQIEQAPKDYISDIKIIPSK-SLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGE 80 (342)
T ss_dssp EEEECSSCCSSCEEEEEEEGGG-TEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSC
T ss_pred CEEECCCCCCCCEEEEEEECCC-CEEEEEECCCEEEEEECCCCCCCEEEEEECCCCCCEEEEEEECCCCCEEEECCCCCC
T ss_conf 7597688998978889995899-999999799929999756998636898855899988999995899978998126531
Q ss_pred EEEEECCCCEEEEEEECCCCC-EEEEEECCCCCEEEEEECCCEEEEEECCCCEE----EEEEECC--CCCEEEEEECCCC
Q ss_conf 999986999069998078998-38999937998999997898099998899907----9998179--9874899996899
Q 001462 82 IKLWDLEESKMVRTLTGHKSN-CTAVEFHPFGEFFASGCMDTNLKIWDIRKKGC----IHTYKGH--TRGINTIRFTPDG 154 (1074)
Q Consensus 82 I~IWDl~sgk~i~tl~~h~~~-VtsIafSPdg~~LaSgs~DGsI~IWDi~sg~~----i~~lk~h--~~~VssIafSPdG 154 (1074)
|.+|++...........+... .....+.++...+++++.++.+.+||++.... ......+ ......+.+.+.+
T Consensus 81 v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (342)
T d1yfqa_ 81 ILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNS 160 (342)
T ss_dssp EEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECS
T ss_pred EEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEEECCCCCCCCCCEEEEEEEECCC
T ss_conf 14542044320000011111111111111111111110122211102023444330230002430012000001000168
Q ss_pred CEEEEEECCCEEEEEECCCCCEEEE---EEECCCCEEEEEECC-CCCEEEEEECCCEEEEEECCCCCEEE----------
Q ss_conf 9999997799499999899906899---630488758999759-99699999689939999889970887----------
Q 001462 155 RWVVSGGFDNVVKVWDLTAGKLLHD---FKFHEGHIRSIDFHP-LEFLLATGSADRTVKFWDLETFELIG---------- 220 (1074)
Q Consensus 155 ~~LvSgs~DGsI~IWDl~tgk~i~~---l~~h~g~ItsLafSP-dg~lLaTGs~DGtI~IWDl~tge~i~---------- 220 (1074)
..+++++.|+.|++|++........ ...+...+.+..+.+ ++..+++++.||.+.+|+........
T Consensus 161 ~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~ 240 (342)
T d1yfqa_ 161 SRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRC 240 (342)
T ss_dssp SEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEEC
T ss_pred CCEEEECCCCCEEEEECCCCCCCCEEEEECCCCCCEEEEEEECCCCCEEEEECCCCEEEEEEECCCCCEEECCCCCEEEE
T ss_conf 70246517984788760567634111210254221014676369998788654899599998059864011123512565
Q ss_pred -----EECCCCCCEEEEEEECCCCEEEEEE-CCCEEEEEECCCEEEECCCCCCCEEEEEEECCCCEEEEEECCCEEEEEE
Q ss_conf -----5179988847999916998999997-9949999936872320102687614579945999999998799299999
Q 001462 221 -----STRPEVTGVHAITFHPDGRTLFSGF-DDNLKVYSWEPVICHDSVDMGWSTLGDLCINDGKLLGCSFYRNSVGIWV 294 (1074)
Q Consensus 221 -----~l~~~~~~ItsIafSPDG~~LasGs-d~~I~Iwdl~s~~~~~~i~~~~s~~~~l~spDGklLatgs~DGsI~IWD 294 (1074)
....+...+.+++|+|++.+|++|+ |+.|++||++.......+..........+.+++.++++++.|+.+++|.
T Consensus 241 ~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~~~~~~~~~s~~~~~l~~a~sdd~~~~~~ 320 (342)
T d1yfqa_ 241 HRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLATSDDTFKTNA 320 (342)
T ss_dssp CCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEEECSSEEEEEEECTHHHHCS
T ss_pred EEECCCCCCCCCCCEEEEECCCCCEEEEECCCCEEEEEECCCCCEEEEECCCCCCEEEEEEECCCEEEEEECCCCEEEEE
T ss_conf 55314777623543159966984479998799989999999894988705899987999994799999999199278830
Q ss_pred C
Q ss_conf 4
Q 001462 295 A 295 (1074)
Q Consensus 295 l 295 (1074)
.
T Consensus 321 ~ 321 (342)
T d1yfqa_ 321 A 321 (342)
T ss_dssp S
T ss_pred E
T ss_conf 1
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.97 E-value=5.8e-29 Score=205.38 Aligned_cols=309 Identities=9% Similarity=0.023 Sum_probs=225.2
Q ss_pred EEEEEC-CCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCC--EEEEEECCCCEEEEEE
Q ss_conf 999912-8993999997899099998799933799507998947999938999999998699--1999986999069998
Q 001462 20 CISIGK-KACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTG--VIKLWDLEESKMVRTL 96 (1074)
Q Consensus 20 sIafSP-dg~~lLaTGs~DGtI~IWDi~t~k~l~sl~~hs~~VtsIafSpdg~~LatGs~DG--~I~IWDl~sgk~i~tl 96 (1074)
.-.||| || +++++++ +|.|++|+...+.... + .|...|.+++|+|+|+.|++++.+. .|++||+.+++.. .+
T Consensus 7 ~~~fSP~dG-~~~a~~~-~g~v~v~d~~~~~~~~-~-~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~-~~ 81 (360)
T d1k32a3 7 AEDFSPLDG-DLIAFVS-RGQAFIQDVSGTYVLK-V-PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAE-KF 81 (360)
T ss_dssp EEEEEECGG-GCEEEEE-TTEEEEECTTSSBEEE-C-SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEE-EC
T ss_pred CCCCCCCCC-CEEEEEE-CCEEEEEECCCCCEEE-C-CCCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCCCEE-EE
T ss_conf 051468899-9999998-9969999899994899-1-6999888899989999999999289989999989999488-75
Q ss_pred ECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEE----------CCCEE
Q ss_conf 07899838999937998999997898099998899907999817998748999968999999997----------79949
Q 001462 97 TGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGG----------FDNVV 166 (1074)
Q Consensus 97 ~~h~~~VtsIafSPdg~~LaSgs~DGsI~IWDi~sg~~i~~lk~h~~~VssIafSPdG~~LvSgs----------~DGsI 166 (1074)
..|...+.+++|+|+++++++++.++.+++|+...+.....+..+...+.+++|+|+|++|+.+. .++.+
T Consensus 82 ~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~ 161 (360)
T d1k32a3 82 EENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAI 161 (360)
T ss_dssp CCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEE
T ss_pred ECCCCEEEEEEECCCCCCCCEECCCCCCCCCCCCCCCEEEEEECCCCCCCCHHHCCCEEEEEEECCCCCCCEEECCCCCE
T ss_conf 08971277412114543210001111100000122210000001355202301213225665212331211000256542
Q ss_pred EEEECCCCCEEEEEEECCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEE-------EEECCCCCCEEEEEEECCCC
Q ss_conf 99998999068996304887589997599969999968993999988997088-------75179988847999916998
Q 001462 167 KVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELI-------GSTRPEVTGVHAITFHPDGR 239 (1074)
Q Consensus 167 ~IWDl~tgk~i~~l~~h~g~ItsLafSPdg~lLaTGs~DGtI~IWDl~tge~i-------~~l~~~~~~ItsIafSPDG~ 239 (1074)
++|+..+++..... .+...+..+.|+|+|..|++++.++.+.+|+....... .....+......+.|++++.
T Consensus 162 ~v~d~~~~~~~~~~-~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 240 (360)
T d1k32a3 162 HVYDMEGRKIFAAT-TENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSM 240 (360)
T ss_dssp EEEETTTTEEEECS-CSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGG
T ss_pred EEECCCCCCEEEEC-CCCCCCCCCCCCCCCCEEEEEECCCCEECCCCCCCCEEECCCCCEEEEECCCCCCCCCEECCCCC
T ss_conf 66304557135303-54322110012577999999959985575333544023203641179852469601206877767
Q ss_pred EEEEEECC----CEEEEEE--CCCEEEECCCCCCCEEEEEEECC---CCEEEEEECCCEEEEEECCCCCEEEEECCCCCC
Q ss_conf 99999799----4999993--68723201026876145799459---999999987992999994799324531278999
Q 001462 240 TLFSGFDD----NLKVYSW--EPVICHDSVDMGWSTLGDLCIND---GKLLGCSFYRNSVGIWVADVSHVEPYGVGAPEP 310 (1074)
Q Consensus 240 ~LasGsd~----~I~Iwdl--~s~~~~~~i~~~~s~~~~l~spD---GklLatgs~DGsI~IWDld~~~l~~~~l~~~~~ 310 (1074)
.+..+... ..++|.+ ...................+... +.+++.+..++.|.+|++..++...+
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~------- 313 (360)
T d1k32a3 241 TSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEV------- 313 (360)
T ss_dssp SCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEEE-------
T ss_pred CCCCCCEEECCCCCCEEECCCCCCCEEEEEECCCCCEEEEEEECCCCEEEEEECCCCCEEEEEECCCCEEEEE-------
T ss_conf 1553113652665400101247675267541389856999973599706999648998799997999749886-------
Q ss_pred CCCCEEEEEECCCCCCCEEEEEEEECCCCCEEEEECC
Q ss_conf 9986319999699992104999896147606896357
Q 001462 311 DQSICTEVKFNPPGSHSLEKVGIIGRSTSGFRSTSPD 347 (1074)
Q Consensus 311 ~~~~ItsVaFSPDGs~~La~vlavG~stG~lr~ivpD 347 (1074)
.+.+.+++|||||+ .++.+...|.++.+-.+
T Consensus 314 -~~~v~~~~~SpDG~-----~l~~~~~Dg~i~v~d~~ 344 (360)
T d1k32a3 314 -KNNLTDLRLSADRK-----TVMVRKDDGKIYTFPLE 344 (360)
T ss_dssp -EEEEEEEEECTTSC-----EEEEEETTSCEEEEESS
T ss_pred -CCCCCEEEECCCCC-----EEEEEECCCEEEEEECC
T ss_conf -48868799999898-----99999789949999999
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.96 E-value=3e-26 Score=187.30 Aligned_cols=281 Identities=8% Similarity=-0.008 Sum_probs=200.4
Q ss_pred CEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCEE---EEEEECCCCCEEEEEECCCC-CEEEEEECCCEE
Q ss_conf 33799507998947999938999999998699199998699906---99980789983899993799-899999789809
Q 001462 49 TALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKM---VRTLTGHKSNCTAVEFHPFG-EFFASGCMDTNL 124 (1074)
Q Consensus 49 k~l~sl~~hs~~VtsIafSpdg~~LatGs~DG~I~IWDl~sgk~---i~tl~~h~~~VtsIafSPdg-~~LaSgs~DGsI 124 (1074)
+.+....+|...|++++|+|++++|++|+.||.|++||+..+.. ......|...|.+++|++++ .+|++|+.||.|
T Consensus 2 ~~v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v 81 (342)
T d1yfqa_ 2 QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEI 81 (342)
T ss_dssp EEEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCE
T ss_pred CEEECCCCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCCCEEEEEECCCCCCEEEEEEECCCCCEEEECCCCCCE
T ss_conf 75976889989788899958999999997999299997569986368988558999889999958999789981265311
Q ss_pred EEEECCCCEEEEEEECCCCC-EEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEE----EEC--CCCEEEEEECCCCC
Q ss_conf 99988999079998179987-489999689999999977994999998999068996----304--88758999759996
Q 001462 125 KIWDIRKKGCIHTYKGHTRG-INTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDF----KFH--EGHIRSIDFHPLEF 197 (1074)
Q Consensus 125 ~IWDi~sg~~i~~lk~h~~~-VssIafSPdG~~LvSgs~DGsI~IWDl~tgk~i~~l----~~h--~g~ItsLafSPdg~ 197 (1074)
++|++...........+... .....+.++...+++++.++.+++||++.+...... ..+ ......+.+.+.+.
T Consensus 82 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (342)
T d1yfqa_ 82 LKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSS 161 (342)
T ss_dssp EEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSS
T ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEEECCCCCCCCCCEEEEEEEECCCC
T ss_conf 45420443200000111111111111111111111101222111020234443302300024300120000010001687
Q ss_pred EEEEEECCCEEEEEECCCCCEE---EEECCCCCCEEEEEEE-CCCCEEEEEE-CCCEEEEEECCCEEEECC---------
Q ss_conf 9999968993999988997088---7517998884799991-6998999997-994999993687232010---------
Q 001462 198 LLATGSADRTVKFWDLETFELI---GSTRPEVTGVHAITFH-PDGRTLFSGF-DDNLKVYSWEPVICHDSV--------- 263 (1074)
Q Consensus 198 lLaTGs~DGtI~IWDl~tge~i---~~l~~~~~~ItsIafS-PDG~~LasGs-d~~I~Iwdl~s~~~~~~i--------- 263 (1074)
.+++++.|+.|++|++...... .........+.+..+. .++..+++++ ++.+.+|.++........
T Consensus 162 ~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~ 241 (342)
T d1yfqa_ 162 RLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCH 241 (342)
T ss_dssp EEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECC
T ss_pred CEEEECCCCCEEEEECCCCCCCCEEEEECCCCCCEEEEEEECCCCCEEEEECCCCEEEEEEECCCCCEEECCCCCEEEEE
T ss_conf 02465179847887605676341112102542210146763699987886548995999980598640111235125655
Q ss_pred -------CCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCCCCCEEEEEECCCCCCCEEEEEEEEC
Q ss_conf -------2687614579945999999998799299999479932453127899999863199996999921049998961
Q 001462 264 -------DMGWSTLGDLCINDGKLLGCSFYRNSVGIWVADVSHVEPYGVGAPEPDQSICTEVKFNPPGSHSLEKVGIIGR 336 (1074)
Q Consensus 264 -------~~~~s~~~~l~spDGklLatgs~DGsI~IWDld~~~l~~~~l~~~~~~~~~ItsVaFSPDGs~~La~vlavG~ 336 (1074)
..........+.|++.+|++|+.||.|++||+..+...... ........++|+|+|+ .++++.
T Consensus 242 ~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~-----~~~~~~~~~~~s~~~~-----~l~~a~ 311 (342)
T d1yfqa_ 242 RLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNF-----AKFNEDSVVKIACSDN-----ILCLAT 311 (342)
T ss_dssp CCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEEC-----CCCSSSEEEEEEECSS-----EEEEEE
T ss_pred EECCCCCCCCCCCEEEEECCCCCEEEEECCCCEEEEEECCCCCEEEEE-----CCCCCCEEEEEEECCC-----EEEEEE
T ss_conf 531477762354315996698447999879998999999989498870-----5899987999994799-----999999
Q ss_pred CCC
Q ss_conf 476
Q 001462 337 STS 339 (1074)
Q Consensus 337 stG 339 (1074)
..+
T Consensus 312 sdd 314 (342)
T d1yfqa_ 312 SDD 314 (342)
T ss_dssp ECT
T ss_pred CCC
T ss_conf 199
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=4.7e-24 Score=172.63 Aligned_cols=276 Identities=17% Similarity=0.321 Sum_probs=211.9
Q ss_pred EEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEEC
Q ss_conf 37995079989479999389999999986991999986999069998078998389999379989999978980999988
Q 001462 50 ALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDI 129 (1074)
Q Consensus 50 ~l~sl~~hs~~VtsIafSpdg~~LatGs~DG~I~IWDl~sgk~i~tl~~h~~~VtsIafSPdg~~LaSgs~DGsI~IWDi 129 (1074)
.+.....|...|+|+.| ++++|++|+.||.|++||+.+++++..+.+|...|.++.| ++++|++++.||.|++|++
T Consensus 7 ~i~~~~~~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~ 82 (293)
T d1p22a2 7 RIHCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDV 82 (293)
T ss_dssp CEECCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEES
T ss_pred EEECCCCCCCCEEEEEE--CCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEC--CCCEEECCCCCCCCCCCCC
T ss_conf 98432899998899987--6999999928993999999999199999267787763423--6300210011101100000
Q ss_pred CCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCE---EEEEEECCCCEEEEEECCCCCEEEEEECCC
Q ss_conf 99907999817998748999968999999997799499999899906---899630488758999759996999996899
Q 001462 130 RKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKL---LHDFKFHEGHIRSIDFHPLEFLLATGSADR 206 (1074)
Q Consensus 130 ~sg~~i~~lk~h~~~VssIafSPdG~~LvSgs~DGsI~IWDl~tgk~---i~~l~~h~g~ItsLafSPdg~lLaTGs~DG 206 (1074)
..+........+.... ..+......++++..++.+.+|+...... ...+..|...+..+.+. ...+++++.|+
T Consensus 83 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~s~d~ 158 (293)
T d1p22a2 83 NTGEMLNTLIHHCEAV--LHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDR 158 (293)
T ss_dssp SSCCEEEEECCCCSCE--EEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEE--TTEEEEEETTS
T ss_pred CCCCCCCCCCCCCCCC--CCCCCCCCCEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCEEC--CCCCCCCCCCC
T ss_conf 2464100111111000--0111111000001356630686134454442121000113543110000--02201106998
Q ss_pred EEEEEECCCCCEEEEECCCCCCEEEEEEECCCCEEEEE-ECCCEEEEEECCCEEEECCCCCCCEEEEEEECCCCEEEEEE
Q ss_conf 39999889970887517998884799991699899999-79949999936872320102687614579945999999998
Q 001462 207 TVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSG-FDDNLKVYSWEPVICHDSVDMGWSTLGDLCINDGKLLGCSF 285 (1074)
Q Consensus 207 tI~IWDl~tge~i~~l~~~~~~ItsIafSPDG~~LasG-sd~~I~Iwdl~s~~~~~~i~~~~s~~~~l~spDGklLatgs 285 (1074)
.|++||+.+++.+..+..+...+..+.++ +.+++++ .++.+++|++................. .+..++.+|++++
T Consensus 159 ~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~-~~~~~~~~l~sg~ 235 (293)
T d1p22a2 159 TIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVR-CIRFDNKRIVSGA 235 (293)
T ss_dssp EEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEE-EEECCSSEEEEEE
T ss_pred CEEEECCCCCCEEEEECCCCCCCCCCCCC--CCEEEEECCCCEEEEEECCCCEEEEEECCCCEEEE-ECCCCCEEEEEEC
T ss_conf 60410078883889971554453221689--87588765899899986655614665214310000-0145410799986
Q ss_pred CCCEEEEEECCCCCEE-----EEECCCCCCCCCCEEEEEECCCCCCCEEEEEEEECCCCCEEE
Q ss_conf 7992999994799324-----531278999998631999969999210499989614760689
Q 001462 286 YRNSVGIWVADVSHVE-----PYGVGAPEPDQSICTEVKFNPPGSHSLEKVGIIGRSTSGFRS 343 (1074)
Q Consensus 286 ~DGsI~IWDld~~~l~-----~~~l~~~~~~~~~ItsVaFSPDGs~~La~vlavG~stG~lr~ 343 (1074)
.||.|++|++...... ........+|.+.|.+++|+ +. .++.+..+|.++.
T Consensus 236 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~d--~~-----~l~s~s~Dg~i~i 291 (293)
T d1p22a2 236 YDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD--EF-----QIVSSSHDDTILI 291 (293)
T ss_dssp TTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEEC--SS-----CEEECCSSSEEEE
T ss_pred CCCEEEEEECCCCCCCCCCCCCEEEEEECCCCCCEEEEEEC--CC-----EEEEEECCCEEEE
T ss_conf 79979999888886444567754557845889988999971--99-----9999922998999
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.96 E-value=2.5e-26 Score=187.76 Aligned_cols=268 Identities=15% Similarity=0.156 Sum_probs=190.7
Q ss_pred EEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCE------EEEEEECCCCCEEEEEEC---C----CCCEEEEE
Q ss_conf 9950799894799993899999999869919999869990------699980789983899993---7----99899999
Q 001462 52 MSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESK------MVRTLTGHKSNCTAVEFH---P----FGEFFASG 118 (1074)
Q Consensus 52 ~sl~~hs~~VtsIafSpdg~~LatGs~DG~I~IWDl~sgk------~i~tl~~h~~~VtsIafS---P----dg~~LaSg 118 (1074)
....+|...|.++++++ +++++++.|+.|++||..... .......|...+..+.+. + +...++++
T Consensus 8 ~~~~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 85 (393)
T d1sq9a_ 8 NAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATT 85 (393)
T ss_dssp EESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEE
T ss_pred ECCCCCCCCCEEEEEEC--CEEEEEECCCEEEEEECCCCCCCCCCCEEEEEEECCCCCEEEEEEEEECCCCCCCCEEEEE
T ss_conf 20876367127999969--9999997999699878987887765404676542047716766675001579987689999
Q ss_pred ECCCEEEEEECCCCEE---E--EEEE-----CCCCCEEEEEECCC-----CCEEEEEECCCEEEEEECCCCC--------
Q ss_conf 7898099998899907---9--9981-----79987489999689-----9999999779949999989990--------
Q 001462 119 CMDTNLKIWDIRKKGC---I--HTYK-----GHTRGINTIRFTPD-----GRWVVSGGFDNVVKVWDLTAGK-------- 175 (1074)
Q Consensus 119 s~DGsI~IWDi~sg~~---i--~~lk-----~h~~~VssIafSPd-----G~~LvSgs~DGsI~IWDl~tgk-------- 175 (1074)
+.||.|.+|++..... . .... .+...+..++|.++ +.++++++.||.+.+|++....
T Consensus 86 ~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~ 165 (393)
T d1sq9a_ 86 SFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTL 165 (393)
T ss_dssp ETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTT
T ss_pred ECCCCEEEEECCCCCCEEEEECCCCCEEEECCCCCCEEEEEEECCCCCCCCCEEEEECCCCCEEEEEEECCCCCCCEEEE
T ss_conf 48991999982289820565124563243115789668999844788654217999838981999874047753410233
Q ss_pred -------EEEE---EEECCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEE------CCCCCCEEEEEEECCCC
Q ss_conf -------6899---6304887589997599969999968993999988997088751------79988847999916998
Q 001462 176 -------LLHD---FKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGST------RPEVTGVHAITFHPDGR 239 (1074)
Q Consensus 176 -------~i~~---l~~h~g~ItsLafSPdg~lLaTGs~DGtI~IWDl~tge~i~~l------~~~~~~ItsIafSPDG~ 239 (1074)
.... ...+...+.+++|+|++ +|++|+.|+.|++||+.+++.+..+ ..|..+|.+++|+|+|+
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~ 244 (393)
T d1sq9a_ 166 NWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGS 244 (393)
T ss_dssp CCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTT
T ss_pred EECCCEECCCCEECCCCCCCCEEEEEECCCC-EEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCEEEECCCCCCCC
T ss_conf 1032000145100025789867899978999-899993898299986023321100001111124256387700466532
Q ss_pred EEEEEECCC----EEEEEECCCEEEECCC--------------CCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCEE
Q ss_conf 999997994----9999936872320102--------------6876145799459999999987992999994799324
Q 001462 240 TLFSGFDDN----LKVYSWEPVICHDSVD--------------MGWSTLGDLCINDGKLLGCSFYRNSVGIWVADVSHVE 301 (1074)
Q Consensus 240 ~LasGsd~~----I~Iwdl~s~~~~~~i~--------------~~~s~~~~l~spDGklLatgs~DGsI~IWDld~~~l~ 301 (1074)
+|++|+++. +++|+.+.+.....+. +...+....|.+|+++|++++.|+.|++||+..+...
T Consensus 245 ~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~~~ 324 (393)
T d1sq9a_ 245 LLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERI 324 (393)
T ss_dssp EEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEE
T ss_pred EEEEECCCCCCCEEEECCCCCCEEEEEECCCCCCCCCEEEEECCCCCEEEECCCCCCCEEEEECCCCEEEEEECCCCCEE
T ss_conf 01124289884210010353213444311566664310232023586660013898880698779998999999999799
Q ss_pred EEECCCCCCCCCCE----EEEEECCCCCC
Q ss_conf 53127899999863----19999699992
Q 001462 302 PYGVGAPEPDQSIC----TEVKFNPPGSH 326 (1074)
Q Consensus 302 ~~~l~~~~~~~~~I----tsVaFSPDGs~ 326 (1074)
... .+|.+.| ..+.|+|+|..
T Consensus 325 ~~l----~gH~~~v~~~~~~~~~~~~~~~ 349 (393)
T d1sq9a_ 325 TTL----NMHCDDIEIEEDILAVDEHGDS 349 (393)
T ss_dssp EEE----ECCGGGCSSGGGCCCBCTTSCB
T ss_pred EEE----CCCCCCCCCCCCEEEECCCCCE
T ss_conf 999----8868761377348999999999
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.95 E-value=1.6e-24 Score=175.71 Aligned_cols=318 Identities=13% Similarity=0.010 Sum_probs=201.9
Q ss_pred CEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCEE--EEEEE---CCCCCE
Q ss_conf 3999997899099998799933799507998947999938999999998699199998699906--99980---789983
Q 001462 29 RFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKM--VRTLT---GHKSNC 103 (1074)
Q Consensus 29 ~lLaTGs~DGtI~IWDi~t~k~l~sl~~hs~~VtsIafSpdg~~LatGs~DG~I~IWDl~sgk~--i~tl~---~h~~~V 103 (1074)
-++++.+.+|.|.+||..+++.+..+..+ ..+..++|+|||+++++++.||.+.+||+.+++. ...+. .|...+
T Consensus 33 ~~~v~~~d~g~v~v~D~~t~~v~~~~~~g-~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~ 111 (432)
T d1qksa2 33 LFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIE 111 (432)
T ss_dssp EEEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEE
T ss_pred EEEEEECCCCEEEEEECCCCCEEEEEECC-CCEEEEEECCCCCEEEEECCCCCEEEEEEECCCCEEEEEEECCCCCCCEE
T ss_conf 89999769997999989998399997379-97137998899999999828999789981089812889984488987769
Q ss_pred EEEEECCCCCEE-EEEECCCEEEEEECCCCEEEEEEECC-----------CCCEEEEEECCCCCEEE-EEECCCEEEEEE
Q ss_conf 899993799899-99978980999988999079998179-----------98748999968999999-997799499999
Q 001462 104 TAVEFHPFGEFF-ASGCMDTNLKIWDIRKKGCIHTYKGH-----------TRGINTIRFTPDGRWVV-SGGFDNVVKVWD 170 (1074)
Q Consensus 104 tsIafSPdg~~L-aSgs~DGsI~IWDi~sg~~i~~lk~h-----------~~~VssIafSPdG~~Lv-Sgs~DGsI~IWD 170 (1074)
.+..|+|||+++ +++..++.|.+||..+++++..+..+ ......+.+++++..++ +...++.|.+|+
T Consensus 112 ~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d 191 (432)
T d1qksa2 112 TSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVD 191 (432)
T ss_dssp ECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEE
T ss_pred EECCCCCCCCEEEEECCCCCEEEEEECCCCCCEEEECCCCCCCCCEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEEE
T ss_conf 84321888888999817898279990765542254024776435220168885058998789998999981688299998
Q ss_pred CCCCCEEEEEE-ECCCCEEEEEECCCCCEEEEEEC-CCEEEEEECCCCCEEEEECC-----CCCCEEEEEEECCCCEEEE
Q ss_conf 89990689963-04887589997599969999968-99399998899708875179-----9888479999169989999
Q 001462 171 LTAGKLLHDFK-FHEGHIRSIDFHPLEFLLATGSA-DRTVKFWDLETFELIGSTRP-----EVTGVHAITFHPDGRTLFS 243 (1074)
Q Consensus 171 l~tgk~i~~l~-~h~g~ItsLafSPdg~lLaTGs~-DGtI~IWDl~tge~i~~l~~-----~~~~ItsIafSPDG~~Las 243 (1074)
..+++...... .+...+..+.|+|++.++++++. ++.+.++|..+.+....+.. +........+...+.....
T Consensus 192 ~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~ 271 (432)
T d1qksa2 192 YTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWAT 271 (432)
T ss_dssp TTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEE
T ss_pred CCCCCCCEEEEECCCCCCCCCEECCCCCEEEEECCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCEECCCCCCEECC
T ss_conf 43787522799833675426538898879999516663677761445268887214862245676641014898831021
Q ss_pred EE--CCCEEEEEECCCEEEECCCCCCCEEEEEEE-----------------------------------CCCCEEEEEEC
Q ss_conf 97--994999993687232010268761457994-----------------------------------59999999987
Q 001462 244 GF--DDNLKVYSWEPVICHDSVDMGWSTLGDLCI-----------------------------------NDGKLLGCSFY 286 (1074)
Q Consensus 244 Gs--d~~I~Iwdl~s~~~~~~i~~~~s~~~~l~s-----------------------------------pDGklLatgs~ 286 (1074)
.. ++.+.+|....... ....|.....++. +|++.+++++.
T Consensus 272 ~~lg~~~v~~~~~~~~~~---~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~~~~~~~~sv~vpDg~~la~~s~ 348 (432)
T d1qksa2 272 SHMGDDSVALIGTDPEGH---PDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGS 348 (432)
T ss_dssp EBSSSSEEEEEECCTTTC---TTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSS
T ss_pred CCCCCCEEEECCCCCCCC---CCCCCEEEEEEECCCCCEEEEEECCCCCCEEECCCCCCCCCEEEEEEEEECHHHCCCCC
T ss_conf 356883587624566555---46565777998868997688872688641021126788877035999996246104556
Q ss_pred CCEEEEEECCCCCEEEEECCCCCCCCCCEEEEEECCCCCCCEEEEEEEECCCCCEEEEECCCCCCCEEEEEEC
Q ss_conf 9929999947993245312789999986319999699992104999896147606896357764306998636
Q 001462 287 RNSVGIWVADVSHVEPYGVGAPEPDQSICTEVKFNPPGSHSLEKVGIIGRSTSGFRSTSPDYETKDIKTIYVD 359 (1074)
Q Consensus 287 DGsI~IWDld~~~l~~~~l~~~~~~~~~ItsVaFSPDGs~~La~vlavG~stG~lr~ivpD~et~eIv~i~iD 359 (1074)
|+.+++|++.. ...+ ..+...+..++|||||++++..+-+.+...| +..+.|..+.++......
T Consensus 349 d~~~k~w~~~~--~~~l-----~~~~~~v~~~~fS~DG~~v~~S~~~~~~~~g--~i~i~D~~T~k~~~~i~~ 412 (432)
T d1qksa2 349 DPEFKTLPIAE--WAGI-----TEGQPRVVQGEFNKDGTEVWFSVWNGKDQES--ALVVVDDKTLELKHVIKD 412 (432)
T ss_dssp CCCEEEECHHH--HHTC-----CSSCCEEEEEEECTTSSEEEEEEECCTTSCC--EEEEEETTTTEEEEEECC
T ss_pred CCCEEECCCCC--CCCC-----CCCCCCEEEEEECCCCCEEEEEEECCCCCCC--CEEEEECCCCEEEEEECC
T ss_conf 78448633434--4445-----7899868976798999999999704888888--689999999558868468
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.95 E-value=1.6e-25 Score=182.46 Aligned_cols=291 Identities=10% Similarity=0.042 Sum_probs=210.3
Q ss_pred CCEEEEEECCCCCEEEEEEECCCCCEEEEEE-CCC-EEEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCEE
Q ss_conf 7227998447998799999128993999997-899-09999879993379950799894799993899999999869919
Q 001462 5 GYKLQEFVAHSANVNCISIGKKACRFLITGG-DDQ-KVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVI 82 (1074)
Q Consensus 5 G~~v~~L~gHss~VtsIafSPdg~~lLaTGs-~DG-tI~IWDi~t~k~l~sl~~hs~~VtsIafSpdg~~LatGs~DG~I 82 (1074)
+..+.++ +|...|.+++|+||| ++|++++ .+| .|++|+..+++ ...+..|...+.+++|+|++++|++++.++.+
T Consensus 33 ~~~~~~~-~~~~~v~~~~~spDg-~~l~~~~~~~g~~v~v~d~~~~~-~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~ 109 (360)
T d1k32a3 33 GTYVLKV-PEPLRIRYVRRGGDT-KVAFIHGTREGDFLGIYDYRTGK-AEKFEENLGNVFAMGVDRNGKFAVVANDRFEI 109 (360)
T ss_dssp SSBEEEC-SCCSCEEEEEECSSS-EEEEEEEETTEEEEEEEETTTCC-EEECCCCCCSEEEEEECTTSSEEEEEETTSEE
T ss_pred CCCEEEC-CCCCCEEEEEECCCC-CEEEEEECCCCCEEEEEECCCCC-EEEEECCCCEEEEEEECCCCCCCCEECCCCCC
T ss_conf 9948991-699988889998999-99999992899899999899994-88750897127741211454321000111110
Q ss_pred EEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEE----------CCCEEEEEECCCCEEEEEEECCCCCEEEEEECC
Q ss_conf 9998699906999807899838999937998999997----------898099998899907999817998748999968
Q 001462 83 KLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGC----------MDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTP 152 (1074)
Q Consensus 83 ~IWDl~sgk~i~tl~~h~~~VtsIafSPdg~~LaSgs----------~DGsI~IWDi~sg~~i~~lk~h~~~VssIafSP 152 (1074)
.+|++..++....+..+...+.+++|+|++++|+.+. .++.+++|++..+...... .+...+..++|+|
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~-~~~~~~~~~~~sp 188 (360)
T d1k32a3 110 MTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAAT-TENSHDYAPAFDA 188 (360)
T ss_dssp EEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECS-CSSSBEEEEEECT
T ss_pred CCCCCCCCCEEEEEECCCCCCCCHHHCCCEEEEEEECCCCCCCEEECCCCCEEEECCCCCCEEEEC-CCCCCCCCCCCCC
T ss_conf 000012221000000135520230121322566521233121100025654266304557135303-5432211001257
Q ss_pred CCCEEEEEECCCEEEEEECCCCCE-------EEEEEECCCCEEEEEECCCCCEEEEEECCC-----EEEEEECCCCCEEE
Q ss_conf 999999997799499999899906-------899630488758999759996999996899-----39999889970887
Q 001462 153 DGRWVVSGGFDNVVKVWDLTAGKL-------LHDFKFHEGHIRSIDFHPLEFLLATGSADR-----TVKFWDLETFELIG 220 (1074)
Q Consensus 153 dG~~LvSgs~DGsI~IWDl~tgk~-------i~~l~~h~g~ItsLafSPdg~lLaTGs~DG-----tI~IWDl~tge~i~ 220 (1074)
+|++|++++.++.+.+|+...... ...+..+......+.|++++..++.+..+. .+..++...+...
T Consensus 189 dg~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 267 (360)
T d1k32a3 189 DSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYR- 267 (360)
T ss_dssp TSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEE-
T ss_pred CCCEEEEEECCCCEECCCCCCCCEEECCCCCEEEEECCCCCCCCCEECCCCCCCCCCCEEECCCCCCEEECCCCCCCEE-
T ss_conf 7999999959985575333544023203641179852469601206877767155311365266540010124767526-
Q ss_pred EECCCCCCEEEEEEECCCC---EEEEEE-CCCEEEEEECCCEEEECCCCCCCEEEEEEECCCCEEEEEECCCEEEEEECC
Q ss_conf 5179988847999916998---999997-994999993687232010268761457994599999999879929999947
Q 001462 221 STRPEVTGVHAITFHPDGR---TLFSGF-DDNLKVYSWEPVICHDSVDMGWSTLGDLCINDGKLLGCSFYRNSVGIWVAD 296 (1074)
Q Consensus 221 ~l~~~~~~ItsIafSPDG~---~LasGs-d~~I~Iwdl~s~~~~~~i~~~~s~~~~l~spDGklLatgs~DGsI~IWDld 296 (1074)
.+..+.+.+..+.+...+. +++.+. ++.+++|++...+..... ..+....+++||++|++++.||.|++|+++
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~---~~v~~~~~SpDG~~l~~~~~Dg~i~v~d~~ 344 (360)
T d1k32a3 268 MIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVK---NNLTDLRLSADRKTVMVRKDDGKIYTFPLE 344 (360)
T ss_dssp EEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEEEE---EEEEEEEECTTSCEEEEEETTSCEEEEESS
T ss_pred EEEECCCCCEEEEEEECCCCEEEEEECCCCCEEEEEECCCCEEEEEC---CCCCEEEECCCCCEEEEEECCCEEEEEECC
T ss_conf 75413898569999735997069996489987999979997498864---886879999989899999789949999999
Q ss_pred CCCEEEE
Q ss_conf 9932453
Q 001462 297 VSHVEPY 303 (1074)
Q Consensus 297 ~~~l~~~ 303 (1074)
.+..+..
T Consensus 345 ~~~~~~~ 351 (360)
T d1k32a3 345 KPEDERT 351 (360)
T ss_dssp CTTSCEE
T ss_pred CCCCCEE
T ss_conf 9985459
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.95 E-value=1e-24 Score=176.98 Aligned_cols=335 Identities=11% Similarity=-0.029 Sum_probs=221.1
Q ss_pred EEECCCCC-EEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEE--EE-
Q ss_conf 99128993-999997899099998799933799507998947999938999999998699199998699906999--80-
Q 001462 22 SIGKKACR-FLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRT--LT- 97 (1074)
Q Consensus 22 afSPdg~~-lLaTGs~DGtI~IWDi~t~k~l~sl~~hs~~VtsIafSpdg~~LatGs~DG~I~IWDl~sgk~i~t--l~- 97 (1074)
.+..+... ++++...||.|++||..+++.+..+..+ ..+..++|+|||++|++++.||.|.+||+.+++.... +.
T Consensus 25 ~~~~d~~~~~~V~~~~dg~v~vwD~~t~~~~~~l~~g-~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~ 103 (426)
T d1hzua2 25 LNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTG-YAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKI 103 (426)
T ss_dssp CSCCCGGGEEEEEETTTTEEEEEETTTCSEEEEEECC-SSEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEEC
T ss_pred CCCCCCCEEEEEEECCCCEEEEEECCCCCEEEEEECC-CCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEEEEC
T ss_conf 2167987089999759997999999999599999689-980389998999999999589988999756886048999867
Q ss_pred --CCCCCEEEEEECCCCCEEEEE-ECCCEEEEEECCCCEEEEEEECCCCC-----------EEEEEECCCCCEEEEEEC-
Q ss_conf --789983899993799899999-78980999988999079998179987-----------489999689999999977-
Q 001462 98 --GHKSNCTAVEFHPFGEFFASG-CMDTNLKIWDIRKKGCIHTYKGHTRG-----------INTIRFTPDGRWVVSGGF- 162 (1074)
Q Consensus 98 --~h~~~VtsIafSPdg~~LaSg-s~DGsI~IWDi~sg~~i~~lk~h~~~-----------VssIafSPdG~~LvSgs~- 162 (1074)
+|...+.++.|+|||++++++ ..++.+.+||...+.+...+..+... ...+.+++++..++....
T Consensus 104 ~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~ 183 (426)
T d1hzua2 104 GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKE 183 (426)
T ss_dssp CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETT
T ss_pred CCCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCCCEEEEEECCCCCCCCEEECCCCCEEEEEECCCCCEEEEECCC
T ss_conf 88876458850026889879996358976999857764125786226777364364278850389987878788885278
Q ss_pred CCEEEEEECCCCCEE-EEEEECCCCEEEEEECCCCCEEEEEE-CCCEEEEEECCCCCEEEEECCCC--CCEEEEEEECCC
Q ss_conf 994999998999068-99630488758999759996999996-89939999889970887517998--884799991699
Q 001462 163 DNVVKVWDLTAGKLL-HDFKFHEGHIRSIDFHPLEFLLATGS-ADRTVKFWDLETFELIGSTRPEV--TGVHAITFHPDG 238 (1074)
Q Consensus 163 DGsI~IWDl~tgk~i-~~l~~h~g~ItsLafSPdg~lLaTGs-~DGtI~IWDl~tge~i~~l~~~~--~~ItsIafSPDG 238 (1074)
.+.+.+++....... .....+...+..+.|+|++.+++++. .+..+.+|+..+++......... .......+...+
T Consensus 184 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (426)
T d1hzua2 184 TGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPK 263 (426)
T ss_dssp TTEEEEEECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETT
T ss_pred CCEEEEEEECCCCCEEEEEECCCCCCEEEEECCCCCEEEEEEECCCCEEEEECCCCCEEEEECCCCCCCCCCEEEEECCC
T ss_conf 97699999246652045775667753761377888678864201100000002556278875058744434201100698
Q ss_pred CE--EEEE--ECCCEEEEEECCC-------EEEECCCC-CCCEEEEEEECCCCEEEE-------EECCCEEEEEECCCCC
Q ss_conf 89--9999--7994999993687-------23201026-876145799459999999-------9879929999947993
Q 001462 239 RT--LFSG--FDDNLKVYSWEPV-------ICHDSVDM-GWSTLGDLCINDGKLLGC-------SFYRNSVGIWVADVSH 299 (1074)
Q Consensus 239 ~~--LasG--sd~~I~Iwdl~s~-------~~~~~i~~-~~s~~~~l~spDGklLat-------gs~DGsI~IWDld~~~ 299 (1074)
.. .+.. .++.+.+|..... .....+.. ...+....++||+++|++ +..++.|+|||+....
T Consensus 264 ~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~ 343 (426)
T d1hzua2 264 YGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLD 343 (426)
T ss_dssp TEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTT
T ss_pred CCCEEEECCCCCCEEEEEECCCCCCCCCCCEEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCCCCCCEEEEEECCCCC
T ss_conf 77457741578965988522566520330258689866887636787489986188850679880228879999898787
Q ss_pred EEEEEC-----CCCCCCCCCEEEEEECCCCCCCEEEEEEEECCCCCEEEEECCCCCCCEEEEEEC
Q ss_conf 245312-----789999986319999699992104999896147606896357764306998636
Q 001462 300 VEPYGV-----GAPEPDQSICTEVKFNPPGSHSLEKVGIIGRSTSGFRSTSPDYETKDIKTIYVD 359 (1074)
Q Consensus 300 l~~~~l-----~~~~~~~~~ItsVaFSPDGs~~La~vlavG~stG~lr~ivpD~et~eIv~i~iD 359 (1074)
...... .....+...+..++|||||+.+++.+...+...| .+.+.|..+.+++.....
T Consensus 344 ~~~~~~~~~~~~~~~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~--~i~v~D~~T~k~~~~i~~ 406 (426)
T d1hzua2 344 AKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSS--ALVVVDDKTLKLKAVVKD 406 (426)
T ss_dssp SCCEEECHHHHHCCCSSCCCEEEEEECSSSSEEEEEECCCTTSCC--EEEEEETTTTEEEEEECC
T ss_pred CCEEEECCCHHCCCCCCCCCEEEEEECCCCCEEEEEEECCCCCCC--EEEEEECCCCEEEEEECC
T ss_conf 670895021102567788518987999999999999724888898--299999998738999878
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=2.3e-24 Score=174.66 Aligned_cols=266 Identities=13% Similarity=0.165 Sum_probs=198.7
Q ss_pred CCEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEE
Q ss_conf 93379950799894799993899999999869919999869990699980789983899993799899999789809999
Q 001462 48 PTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIW 127 (1074)
Q Consensus 48 ~k~l~sl~~hs~~VtsIafSpdg~~LatGs~DG~I~IWDl~sgk~i~tl~~h~~~VtsIafSPdg~~LaSgs~DGsI~IW 127 (1074)
.+.+..+.+|..+|++++|++ |++|+.||.|++||+.++ ...|...|.++.|++++ .+++++.|+.+++|
T Consensus 3 ~~~i~~l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~-----~~~h~~~V~~~~~~~~~-~~~s~s~D~~v~~w 72 (287)
T d1pgua2 3 DEVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSM-----HQDHSNLIVSLDNSKAQ-EYSSISWDDTLKVN 72 (287)
T ss_dssp EEEEEEECCCSSCEEEEETTT----TEEEETTSCEEETTTTEE-----ECCCCSCEEEEECCSTT-CCEEEETTTEEEET
T ss_pred CCEEEEECCCCCCEEEEEECC----EEEEECCCEEEEEECCCC-----CCCCCCCEEEEEECCCC-EEEEEEECCCCCCC
T ss_conf 603499988798649999895----789848991999989998-----88877878999965997-28988610122211
Q ss_pred ECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEECCCCEEEEEECCCCCEEEEEECCC-
Q ss_conf 8899907999817998748999968999999997799499999899906899630488758999759996999996899-
Q 001462 128 DIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADR- 206 (1074)
Q Consensus 128 Di~sg~~i~~lk~h~~~VssIafSPdG~~LvSgs~DGsI~IWDl~tgk~i~~l~~h~g~ItsLafSPdg~lLaTGs~DG- 206 (1074)
++... . ....+.++.+.+++..+++ +.++.+.+|+...++.+..+.. ...+. ++++++..+++++.++
T Consensus 73 ~~~~~------~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~v~~~~~~ 141 (287)
T d1pgua2 73 GITKH------E-FGSQPKVASANNDGFTAVL-TNDDDLLILQSFTGDIIKSVRL-NSPGS--AVSLSQNYVAVGLEEGN 141 (287)
T ss_dssp TEEEE------E-CSSCEEEEEECSSSEEEEE-ETTSEEEEEETTTCCEEEEEEC-SSCEE--EEEECSSEEEEEETTTS
T ss_pred CCCCC------C-CCCCEEEEEECCCCCEEEE-EECCCCEEEECCCEEEEEECCC-CCEEE--EEECCCCCEEEECCCCC
T ss_conf 11111------1-1221014664167856999-6033210000110035431012-22035--65214751110002210
Q ss_pred EEEEEECCCCCEEEEEC-CCCCCEEEEEEECCCCEEEEEE-CCCEEEEEECCCEEEEC-CCCCCCEEE-EEEE-------
Q ss_conf 39999889970887517-9988847999916998999997-99499999368723201-026876145-7994-------
Q 001462 207 TVKFWDLETFELIGSTR-PEVTGVHAITFHPDGRTLFSGF-DDNLKVYSWEPVICHDS-VDMGWSTLG-DLCI------- 275 (1074)
Q Consensus 207 tI~IWDl~tge~i~~l~-~~~~~ItsIafSPDG~~LasGs-d~~I~Iwdl~s~~~~~~-i~~~~s~~~-~l~s------- 275 (1074)
.+++|++........+. .+...+.+++|+|++.+|++|+ ++.+++|+......... +..+...+. ..+.
T Consensus 142 ~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~ 221 (287)
T d1pgua2 142 TIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGAN 221 (287)
T ss_dssp CEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC----
T ss_pred EEEEEECCCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCEEEECCCCCCCC
T ss_conf 00210001221000121024785369995167652110111111000000233211000111111110000013654100
Q ss_pred ---CCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCCCCCEEEEEECCCCCCCEEEEEEEECCCCCEEE
Q ss_conf ---59999999987992999994799324531278999998631999969999210499989614760689
Q 001462 276 ---NDGKLLGCSFYRNSVGIWVADVSHVEPYGVGAPEPDQSICTEVKFNPPGSHSLEKVGIIGRSTSGFRS 343 (1074)
Q Consensus 276 ---pDGklLatgs~DGsI~IWDld~~~l~~~~l~~~~~~~~~ItsVaFSPDGs~~La~vlavG~stG~lr~ 343 (1074)
.++.+|++|+.|+.|+||++.......... .+|...+.++.|+|++. ++..|. .|.+++
T Consensus 222 ~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~---~~h~~~V~~v~~~~~~~-----l~s~g~-D~~v~i 283 (287)
T d1pgua2 222 EEEIEEDLVATGSLDTNIFIYSVKRPMKIIKAL---NAHKDGVNNLLWETPST-----LVSSGA-DACIKR 283 (287)
T ss_dssp --CCSCCEEEEEETTSCEEEEESSCTTCCEEET---TSSTTCEEEEEEEETTE-----EEEEET-TSCEEE
T ss_pred CCCCCCCEEEEECCCCEEEEEECCCCCEEEEEE---CCCCCCEEEEEECCCCE-----EEEEEC-CCEEEE
T ss_conf 126788702766499959998889997589992---78789858999989998-----999979-992999
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.95 E-value=5.2e-22 Score=158.99 Aligned_cols=266 Identities=14% Similarity=0.188 Sum_probs=214.2
Q ss_pred EEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEE-EEECCCEEEEEECCCCEEEEEEECCCCCEEEEEEC
Q ss_conf 99997899099998799933799507998947999938999999-99869919999869990699980789983899993
Q 001462 31 LITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVL-AGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFH 109 (1074)
Q Consensus 31 LaTGs~DGtI~IWDi~t~k~l~sl~~hs~~VtsIafSpdg~~La-tGs~DG~I~IWDl~sgk~i~tl~~h~~~VtsIafS 109 (1074)
+++++.|+.|.+||+.+++.+..+.. ...+..++|+|+|++|+ ++..++.|.+||+.+++.+..+..+. ....+.|+
T Consensus 5 yV~~~~~~~v~v~D~~t~~~~~~i~~-g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~-~~~~~~~~ 82 (301)
T d1l0qa2 5 YIANSESDNISVIDVTSNKVTATIPV-GSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVS 82 (301)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEEEC-SSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEEC
T ss_pred EEEECCCCEEEEEECCCCEEEEEEEC-CCCCEEEEEECCCCEEEEEECCCCEEEEEECCCCCEEEEEECCC-CCCCCCCC
T ss_conf 99978999899999999959999988-99836999928989999997899989999999894103200024-64311000
Q ss_pred CCCCEEEEE-ECCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEE-EECCCEEEEEECCCCCEEEEEEECCCCE
Q ss_conf 799899999-78980999988999079998179987489999689999999-9779949999989990689963048875
Q 001462 110 PFGEFFASG-CMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVS-GGFDNVVKVWDLTAGKLLHDFKFHEGHI 187 (1074)
Q Consensus 110 Pdg~~LaSg-s~DGsI~IWDi~sg~~i~~lk~h~~~VssIafSPdG~~LvS-gs~DGsI~IWDl~tgk~i~~l~~h~g~I 187 (1074)
+++.+++++ ..++.+.+|+...+.....+..+ ....+++|+|++..++. +..++.+.+|+..++.....+.. ...+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 160 (301)
T d1l0qa2 83 PDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSV-GRSP 160 (301)
T ss_dssp TTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC-CSSE
T ss_pred CCCCCCCCCCCCCCEEEECCCCCCEEEEECCCC-CCCEEEEEECCCCEEEEEECCCCCEEEEECCCCCEEEECCC-CCCC
T ss_conf 111111111111100110012430243202444-44237876058971554201111001100014630353156-7884
Q ss_pred EEEEECCCCCEEEEEECC-CEEEEEECCCCCEEEEECCCCCCEEEEEEECCCCEEEEE-EC---CCEEEEEECCCEEEEC
Q ss_conf 899975999699999689-939999889970887517998884799991699899999-79---9499999368723201
Q 001462 188 RSIDFHPLEFLLATGSAD-RTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSG-FD---DNLKVYSWEPVICHDS 262 (1074)
Q Consensus 188 tsLafSPdg~lLaTGs~D-GtI~IWDl~tge~i~~l~~~~~~ItsIafSPDG~~LasG-sd---~~I~Iwdl~s~~~~~~ 262 (1074)
..+.++|++..++++..+ +.+.+|+............+ ..+..++|++++..++++ .+ +.+.+|+.........
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~ 239 (301)
T d1l0qa2 161 KGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVE-AAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITAR 239 (301)
T ss_dssp EEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEE
T ss_pred EEEEEECCCCCEEEECCCCCCCCCCCCCCEEEEECCCCC-CCCCEEECCCCCCCCCCCCCCCEEEEEEEEECCCCEEEEE
T ss_conf 288860465401310121111111111100011101335-7750311011110111100210000232365699819999
Q ss_pred CCCCCCEEEEEEECCCCEE-EEEECCCEEEEEECCCCCEE
Q ss_conf 0268761457994599999-99987992999994799324
Q 001462 263 VDMGWSTLGDLCINDGKLL-GCSFYRNSVGIWVADVSHVE 301 (1074)
Q Consensus 263 i~~~~s~~~~l~spDGklL-atgs~DGsI~IWDld~~~l~ 301 (1074)
+..+..+....+++||++| ++++.++.|.+||+..+.+.
T Consensus 240 ~~~~~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~~~ 279 (301)
T d1l0qa2 240 IPVGPDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTIT 279 (301)
T ss_dssp EECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEE
T ss_pred ECCCCCEEEEEEECCCCEEEEEECCCCEEEEEECCCCEEE
T ss_conf 8489987799991898999999899996999999999599
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.94 E-value=5.1e-23 Score=165.71 Aligned_cols=289 Identities=13% Similarity=0.088 Sum_probs=212.9
Q ss_pred CEEEEEECCCEEEEEECCCCCEEEEEECC--CCCEEEEEECCCCCEEE-EEECCCEEEEEECCCCEEEEEEECCCC----
Q ss_conf 39999978990999987999337995079--98947999938999999-998699199998699906999807899----
Q 001462 29 RFLITGGDDQKVNLWAIGKPTALMSLCGL--SSPVDSVAFDSAEVLVL-AGASTGVIKLWDLEESKMVRTLTGHKS---- 101 (1074)
Q Consensus 29 ~lLaTGs~DGtI~IWDi~t~k~l~sl~~h--s~~VtsIafSpdg~~La-tGs~DG~I~IWDl~sgk~i~tl~~h~~---- 101 (1074)
.|+++++.|+.|.+||+.+++.+..+..+ ...+.+++|+|+|++++ +++.++.|.+||+.+++.+..+..+..
T Consensus 2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~ 81 (337)
T d1pbyb_ 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV 81 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred EEEEEECCCCEEEEEECCCCEEEEEEECCCCCCCCCEEEECCCCCEEEEEECCCCEEEEEECCCCCEEEEEECCCCCCCC
T ss_conf 69999767998999999999499999877889982379999998999999789994999999999298887247773125
Q ss_pred -CEEEEEECCCCCEEEEEE------------CCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEE
Q ss_conf -838999937998999997------------8980999988999079998179987489999689999999977994999
Q 001462 102 -NCTAVEFHPFGEFFASGC------------MDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKV 168 (1074)
Q Consensus 102 -~VtsIafSPdg~~LaSgs------------~DGsI~IWDi~sg~~i~~lk~h~~~VssIafSPdG~~LvSgs~DGsI~I 168 (1074)
.+..+.|+|++++++++. .++.+.+||...+.....+.. ...+..++|+++|.++++++. .+.+
T Consensus 82 ~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~--~~~~ 158 (337)
T d1pbyb_ 82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGLGR--DLHV 158 (337)
T ss_dssp ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEESS--SEEE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCEEEECCCCCCCEEECCCCCCEEEEECCC-CCCCEEEEECCCCCEEEEECC--CCCE
T ss_conf 4025489868775799950477620342034555212035667759884145-687218998688888999717--7505
Q ss_pred EECCCCCEEEEEEECCCCEEEEEECCCCCE------------------------EEEEECCCEEEEEECCCCCEEEE-EC
Q ss_conf 998999068996304887589997599969------------------------99996899399998899708875-17
Q 001462 169 WDLTAGKLLHDFKFHEGHIRSIDFHPLEFL------------------------LATGSADRTVKFWDLETFELIGS-TR 223 (1074)
Q Consensus 169 WDl~tgk~i~~l~~h~g~ItsLafSPdg~l------------------------LaTGs~DGtI~IWDl~tge~i~~-l~ 223 (1074)
||..+++....+..+... ....+.+++.. +..+..++.+.+|+...+..... +.
T Consensus 159 ~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (337)
T d1pbyb_ 159 MDPEAGTLVEDKPIQSWE-AETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVR 237 (337)
T ss_dssp EETTTTEEEEEECSTTTT-TTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEE
T ss_pred EEEECCCEEEEEECCCCC-CCCEECCCCCEEECCCCCCCEEEEEEEEEEECCCEEEECCCCCCEEEEECCCCCEEEEEEC
T ss_conf 663037278886147754-3311357763140146653124663244410366045403676179998688858889832
Q ss_pred CCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCEEEECCCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCEE-E
Q ss_conf 998884799991699899999799499999368723201026876145799459999999987992999994799324-5
Q 001462 224 PEVTGVHAITFHPDGRTLFSGFDDNLKVYSWEPVICHDSVDMGWSTLGDLCINDGKLLGCSFYRNSVGIWVADVSHVE-P 302 (1074)
Q Consensus 224 ~~~~~ItsIafSPDG~~LasGsd~~I~Iwdl~s~~~~~~i~~~~s~~~~l~spDGklLatgs~DGsI~IWDld~~~l~-~ 302 (1074)
.+...+..+.+++++.+++.+ ++.+.+|++........+.....+....+++||++|++++.++.|.+||....+.. .
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~-~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~~~v~~ 316 (337)
T d1pbyb_ 238 IMDVFYFSTAVNPAKTRAFGA-YNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQ 316 (337)
T ss_dssp ECSSCEEEEEECTTSSEEEEE-ESEEEEEETTTTEEEEEEECSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEE
T ss_pred CCCCCEEEEEECCCCEEEEEC-CCCEEEEECCCCCEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEE
T ss_conf 887505888742661399973-5528999898896999974899889999978999999994999299999998769899
Q ss_pred EECCCCCCCCCCEEEEEECCC
Q ss_conf 312789999986319999699
Q 001462 303 YGVGAPEPDQSICTEVKFNPP 323 (1074)
Q Consensus 303 ~~l~~~~~~~~~ItsVaFSPD 323 (1074)
+.... .+......-.-|++|
T Consensus 317 i~~~g-~~~~~~~~~~~~~~~ 336 (337)
T d1pbyb_ 317 VDLPG-NASMSLASVRLFTRD 336 (337)
T ss_dssp EECGG-GCCCBTCCCEEEECC
T ss_pred EECCC-CCCCCEEEEEEECCC
T ss_conf 98899-986512652587278
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.94 E-value=6.3e-22 Score=158.41 Aligned_cols=300 Identities=11% Similarity=0.071 Sum_probs=206.0
Q ss_pred CCCCEEEEEECCCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEE--EE---CCCCCEEEEEECCCCCEEEEE-
Q ss_conf 667227998447998799999128993999997899099998799933799--50---799894799993899999999-
Q 001462 3 KRGYKLQEFVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMS--LC---GLSSPVDSVAFDSAEVLVLAG- 76 (1074)
Q Consensus 3 ktG~~v~~L~gHss~VtsIafSPdg~~lLaTGs~DGtI~IWDi~t~k~l~s--l~---~hs~~VtsIafSpdg~~LatG- 76 (1074)
.+++.+..+..|. .+..++|+||| ++|++++.|+.+++||+.+++.... +. +|...+.+++|+|+|++++++
T Consensus 50 ~t~~~~~~l~~g~-~~~~vafSPDG-k~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~ 127 (426)
T d1hzua2 50 DSKKIVKVIDTGY-AVHISRMSASG-RYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGA 127 (426)
T ss_dssp TTCSEEEEEECCS-SEEEEEECTTS-CEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEE
T ss_pred CCCCEEEEEECCC-CEEEEEECCCC-CEEEEEECCCCEEEEECCCCCEEEEEEEECCCCCCCEEEEEEECCCCCEEEEEE
T ss_conf 9995999996899-80389998999-999999589988999756886048999867888764588500268898799963
Q ss_pred ECCCEEEEEECCCCEEEEEEECCCCC-----------EEEEEECCCCCEEEEEEC-CCEEEEEECCCCEE-EEEEECCCC
Q ss_conf 86991999986999069998078998-----------389999379989999978-98099998899907-999817998
Q 001462 77 ASTGVIKLWDLEESKMVRTLTGHKSN-----------CTAVEFHPFGEFFASGCM-DTNLKIWDIRKKGC-IHTYKGHTR 143 (1074)
Q Consensus 77 s~DG~I~IWDl~sgk~i~tl~~h~~~-----------VtsIafSPdg~~LaSgs~-DGsI~IWDi~sg~~-i~~lk~h~~ 143 (1074)
..++.+.+||...+.+...+..+... ...+.+++++..++.... .+.+.+++...... ......+..
T Consensus 128 ~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 207 (426)
T d1hzua2 128 YWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAP 207 (426)
T ss_dssp EESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEEECCS
T ss_pred CCCCEEEEECCCCCCEEEEEECCCCCCCCEEECCCCCEEEEEECCCCCEEEEECCCCCEEEEEEECCCCCEEEEEECCCC
T ss_conf 58976999857764125786226777364364278850389987878788885278976999992466520457756677
Q ss_pred CEEEEEECCCCCEEEEEE-CCCEEEEEECCCCCEEEEEEECCC--CEEEEEECC-CC-CEE-EEEECCCEEEEEECCC--
Q ss_conf 748999968999999997-799499999899906899630488--758999759-99-699-9996899399998899--
Q 001462 144 GINTIRFTPDGRWVVSGG-FDNVVKVWDLTAGKLLHDFKFHEG--HIRSIDFHP-LE-FLL-ATGSADRTVKFWDLET-- 215 (1074)
Q Consensus 144 ~VssIafSPdG~~LvSgs-~DGsI~IWDl~tgk~i~~l~~h~g--~ItsLafSP-dg-~lL-aTGs~DGtI~IWDl~t-- 215 (1074)
.+..+.|+|++++++++. .+..+.+|+..+++.+..+..... ......+.. .. ... +....|+.+.+|+...
T Consensus 208 ~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~ 287 (426)
T d1hzua2 208 FLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKN 287 (426)
T ss_dssp SEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTT
T ss_pred CCEEEEECCCCCEEEEEEECCCCEEEEECCCCCEEEEECCCCCCCCCCEEEEECCCCCCEEEECCCCCCEEEEEECCCCC
T ss_conf 53761377888678864201100000002556278875058744434201100698774577415789659885225665
Q ss_pred -----CCEEEEECCCCCCEEEEEEECCCCEEEEE--------ECCCEEEEEECCCEEEECC----------CCCCCEEEE
Q ss_conf -----70887517998884799991699899999--------7994999993687232010----------268761457
Q 001462 216 -----FELIGSTRPEVTGVHAITFHPDGRTLFSG--------FDDNLKVYSWEPVICHDSV----------DMGWSTLGD 272 (1074)
Q Consensus 216 -----ge~i~~l~~~~~~ItsIafSPDG~~LasG--------sd~~I~Iwdl~s~~~~~~i----------~~~~s~~~~ 272 (1074)
++....+..|...+..++|+|++++|++. .++.+++|+..+......+ .........
T Consensus 288 ~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~ 367 (426)
T d1hzua2 288 HPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQP 367 (426)
T ss_dssp CTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEE
T ss_pred CCCCCCEEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCCCCCCEEEEEECCCCCCCEEEECCCHHCCCCCCCCCEEEE
T ss_conf 20330258689866887636787489986188850679880228879999898787670895021102567788518987
Q ss_pred EEECCCCEEEEEE-----CCCEEEEEECCCCCEEEEE
Q ss_conf 9945999999998-----7992999994799324531
Q 001462 273 LCINDGKLLGCSF-----YRNSVGIWVADVSHVEPYG 304 (1074)
Q Consensus 273 l~spDGklLatgs-----~DGsI~IWDld~~~l~~~~ 304 (1074)
.|++||++++.+. .+|.|.|||....++....
T Consensus 368 ~fSpDGk~i~vs~~~~~~~~~~i~v~D~~T~k~~~~i 404 (426)
T d1hzua2 368 EYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVV 404 (426)
T ss_dssp EECSSSSEEEEEECCCTTSCCEEEEEETTTTEEEEEE
T ss_pred EECCCCCEEEEEEECCCCCCCEEEEEECCCCEEEEEE
T ss_conf 9999999999997248888982999999987389998
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.93 E-value=3.2e-20 Score=147.07 Aligned_cols=269 Identities=17% Similarity=0.156 Sum_probs=194.2
Q ss_pred EEEECCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEE-EEECCCEEEEEECCCCEEEEEEECCCCCEEEEEECC
Q ss_conf 9998699199998699906999807899838999937998999-997898099998899907999817998748999968
Q 001462 74 LAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFA-SGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTP 152 (1074)
Q Consensus 74 atGs~DG~I~IWDl~sgk~i~tl~~h~~~VtsIafSPdg~~La-Sgs~DGsI~IWDi~sg~~i~~lk~h~~~VssIafSP 152 (1074)
++++.++.|.+||+.+++.+..+.. ......++|+|+|++++ ++..++.|.+||+.++..+..+..+. .+..+.|++
T Consensus 6 V~~~~~~~v~v~D~~t~~~~~~i~~-g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~-~~~~~~~~~ 83 (301)
T d1l0qa2 6 IANSESDNISVIDVTSNKVTATIPV-GSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSP 83 (301)
T ss_dssp EEETTTTEEEEEETTTTEEEEEEEC-SSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECT
T ss_pred EEECCCCEEEEEECCCCEEEEEEEC-CCCCEEEEEECCCCEEEEEECCCCEEEEEECCCCCEEEEEECCC-CCCCCCCCC
T ss_conf 9978999899999999959999988-99836999928989999997899989999999894103200024-643110001
Q ss_pred CCCEEEE-EECCCEEEEEECCCCCEEEEEEECCCCEEEEEECCCCCEEEEE-ECCCEEEEEECCCCCEEEEECCCCCCEE
Q ss_conf 9999999-9779949999989990689963048875899975999699999-6899399998899708875179988847
Q 001462 153 DGRWVVS-GGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATG-SADRTVKFWDLETFELIGSTRPEVTGVH 230 (1074)
Q Consensus 153 dG~~LvS-gs~DGsI~IWDl~tgk~i~~l~~h~g~ItsLafSPdg~lLaTG-s~DGtI~IWDl~tge~i~~l~~~~~~It 230 (1074)
++.++++ +..++.+.+|+..+++....+.. .....++.|+|++..++.. ..++.+.+|+..+......+..+ ..+.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 161 (301)
T d1l0qa2 84 DGKQVYVTNMASSTLSVIDTTSNTVAGTVKT-GKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-RSPK 161 (301)
T ss_dssp TSSEEEEEETTTTEEEEEETTTTEEEEEEEC-SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC-SSEE
T ss_pred CCCCCCCCCCCCCEEEECCCCCCEEEEECCC-CCCCEEEEEECCCCEEEEEECCCCCEEEEECCCCCEEEECCCC-CCCE
T ss_conf 1111111111110011001243024320244-4442378760589715542011110011000146303531567-8842
Q ss_pred EEEEECCCCEEEEEEC--CCEEEEEECCCEEEECCCCCCCEEEEEEECCCCEEEEEEC---CCEEEEEECCCCCEEEEEC
Q ss_conf 9999169989999979--9499999368723201026876145799459999999987---9929999947993245312
Q 001462 231 AITFHPDGRTLFSGFD--DNLKVYSWEPVICHDSVDMGWSTLGDLCINDGKLLGCSFY---RNSVGIWVADVSHVEPYGV 305 (1074)
Q Consensus 231 sIafSPDG~~LasGsd--~~I~Iwdl~s~~~~~~i~~~~s~~~~l~spDGklLatgs~---DGsI~IWDld~~~l~~~~l 305 (1074)
.+.|++++..++++.. ..+.+|................+....+.+++..++.+.. ++.|.+||..........
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~- 240 (301)
T d1l0qa2 162 GIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARI- 240 (301)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEE-
T ss_pred EEEEECCCCCEEEECCCCCCCCCCCCCCEEEEECCCCCCCCCEEECCCCCCCCCCCCCCCEEEEEEEEECCCCEEEEEE-
T ss_conf 8886046540131012111111111110001110133577503110111101111002100002323656998199998-
Q ss_pred CCCCCCCCCEEEEEECCCCCCCEEEEEEEECCCCCEEEEECCCCCCCEEEEE
Q ss_conf 7899999863199996999921049998961476068963577643069986
Q 001462 306 GAPEPDQSICTEVKFNPPGSHSLEKVGIIGRSTSGFRSTSPDYETKDIKTIY 357 (1074)
Q Consensus 306 ~~~~~~~~~ItsVaFSPDGs~~La~vlavG~stG~lr~ivpD~et~eIv~i~ 357 (1074)
.....+.+++|+|||+. +.+.+...+ ...+.|.+++++....
T Consensus 241 ----~~~~~~~~va~spdg~~----l~va~~~~~--~i~v~D~~t~~~~~~~ 282 (301)
T d1l0qa2 241 ----PVGPDPAGIAVTPDGKK----VYVALSFCN--TVSVIDTATNTITATM 282 (301)
T ss_dssp ----ECCSSEEEEEECTTSSE----EEEEETTTT--EEEEEETTTTEEEEEE
T ss_pred ----CCCCCEEEEEEECCCCE----EEEEECCCC--EEEEEECCCCEEEEEE
T ss_conf ----48998779999189899----999989999--6999999999599999
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.92 E-value=2.8e-22 Score=160.78 Aligned_cols=275 Identities=12% Similarity=0.023 Sum_probs=190.8
Q ss_pred EEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEE-CCCCCEEEEEECCCCCEEEEE-ECCCEEEEEECCCCEEEEEEEC
Q ss_conf 99912899399999789909999879993379950-799894799993899999999-8699199998699906999807
Q 001462 21 ISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLC-GLSSPVDSVAFDSAEVLVLAG-ASTGVIKLWDLEESKMVRTLTG 98 (1074)
Q Consensus 21 IafSPdg~~lLaTGs~DGtI~IWDi~t~k~l~sl~-~hs~~VtsIafSpdg~~LatG-s~DG~I~IWDl~sgk~i~tl~~ 98 (1074)
++|++++ +||++++.++.|.+||+.+++.+..+. .+...+.+++|+|||++++++ ..++.|.+||+.+++.+..+..
T Consensus 2 ~a~~~~~-~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~ 80 (346)
T d1jmxb_ 2 PALKAGH-EYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANL 80 (346)
T ss_dssp CCCCTTC-EEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEES
T ss_pred CCCCCCC-CEEEEECCCCEEEEEECCCCCEEEEEECCCCCCCCEEEECCCCCEEEEEECCCCCEEEEECCCCEEEEEECC
T ss_conf 5588999-699998699979999999998999999489997045999789899999978999399996756713123103
Q ss_pred CCC------CEEEEEECCCCCEEEEEE------------CCCEEEEEECCCCEEEEEEE--CCCCCEEEEEECCCCCEEE
Q ss_conf 899------838999937998999997------------89809999889990799981--7998748999968999999
Q 001462 99 HKS------NCTAVEFHPFGEFFASGC------------MDTNLKIWDIRKKGCIHTYK--GHTRGINTIRFTPDGRWVV 158 (1074)
Q Consensus 99 h~~------~VtsIafSPdg~~LaSgs------------~DGsI~IWDi~sg~~i~~lk--~h~~~VssIafSPdG~~Lv 158 (1074)
... .+..+.|+|+|+++++++ .++.+.+|+...+.....+. .....+..+.+++++.+++
T Consensus 81 ~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (346)
T d1jmxb_ 81 SSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYV 160 (346)
T ss_dssp CCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEE
T ss_pred CCCCCCCCCCEEEEEEECCCCEEEEEECCCCCEEEEECCCCCEEEEEECCCCEEEEEEEEEECCCCEEEEEECCCCEEEE
T ss_conf 65434547741799990588889997057752156514676248998525632656887310247439999527878998
Q ss_pred EEECCCEEEEEECCCCCEEEEEEECCCCEEEEEECCCCCEEE--------------------------EEECCCEEEEEE
Q ss_conf 997799499999899906899630488758999759996999--------------------------996899399998
Q 001462 159 SGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLA--------------------------TGSADRTVKFWD 212 (1074)
Q Consensus 159 Sgs~DGsI~IWDl~tgk~i~~l~~h~g~ItsLafSPdg~lLa--------------------------TGs~DGtI~IWD 212 (1074)
. ++.+.+|++.+++.+..+..+. ....+.++|++..++ ++..+..+.+|+
T Consensus 161 ~---~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (346)
T d1jmxb_ 161 A---GPDIYKMDVKTGKYTVALPLRN-WNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVD 236 (346)
T ss_dssp E---SSSEEEECTTTCCEEEEECSTT-CCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEE
T ss_pred E---CCCCEEEECCCCCEEEEEECCC-CCCCEEEECCCCEEEEEECCCCCEEEEEEEEEECCCCEEEEECCCCCEEEEEE
T ss_conf 4---7962699806997899996489-86623771255289998649981676512311126732575404783499997
Q ss_pred CCCCCEEEE-ECCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCEEEECCCCCCCEEEEEEECCCCEEEEEECCCEEE
Q ss_conf 899708875-1799888479999169989999979949999936872320102687614579945999999998799299
Q 001462 213 LETFELIGS-TRPEVTGVHAITFHPDGRTLFSGFDDNLKVYSWEPVICHDSVDMGWSTLGDLCINDGKLLGCSFYRNSVG 291 (1074)
Q Consensus 213 l~tge~i~~-l~~~~~~ItsIafSPDG~~LasGsd~~I~Iwdl~s~~~~~~i~~~~s~~~~l~spDGklLatgs~DGsI~ 291 (1074)
..++..... ...+...+..+.+++++.+++....+.+.+|+....+....+..+..+....+++||++|++++.|+.|.
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~va~s~DG~~l~v~~~d~~v~ 316 (346)
T d1jmxb_ 237 LKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTFNDLA 316 (346)
T ss_dssp TTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEEESEEEEEETTTTEEEEEEECSSCCCEEEECSSSSCEEEESBSSEEE
T ss_pred CCCCCEEEEEEECCCCEEEEEEEECCCCEEEEECCCEEEEEECCCCCEEEEECCCCCEEEEEECCCCCEEEEEECCCCEE
T ss_conf 77883687876315660688897179978999429838999899993999974999778999968999999994899299
Q ss_pred EEECCCCCE
Q ss_conf 999479932
Q 001462 292 IWVADVSHV 300 (1074)
Q Consensus 292 IWDld~~~l 300 (1074)
+||....+.
T Consensus 317 v~D~~t~~~ 325 (346)
T d1jmxb_ 317 VFNPDTLEK 325 (346)
T ss_dssp EEETTTTEE
T ss_pred EEECCCCCE
T ss_conf 999965879
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.92 E-value=2.8e-21 Score=154.14 Aligned_cols=245 Identities=11% Similarity=-0.012 Sum_probs=133.3
Q ss_pred EEEEEECCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCEE--EEEEE---CCCCCEE
Q ss_conf 999998699199998699906999807899838999937998999997898099998899907--99981---7998748
Q 001462 72 LVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGC--IHTYK---GHTRGIN 146 (1074)
Q Consensus 72 ~LatGs~DG~I~IWDl~sgk~i~tl~~h~~~VtsIafSPdg~~LaSgs~DGsI~IWDi~sg~~--i~~lk---~h~~~Vs 146 (1074)
++++.+.+|.|.+||..+++.+..+..+ ..+..++|+|||+++++++.|+.+.+||+.+++. ...+. .|...+.
T Consensus 34 ~~v~~~d~g~v~v~D~~t~~v~~~~~~g-~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~ 112 (432)
T d1qksa2 34 FSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIET 112 (432)
T ss_dssp EEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEE
T ss_pred EEEEECCCCEEEEEECCCCCEEEEEECC-CCEEEEEECCCCCEEEEECCCCCEEEEEEECCCCEEEEEEECCCCCCCEEE
T ss_conf 9999769997999989998399997379-971379988999999998289997899810898128899844889877698
Q ss_pred EEEECCCCCEE-EEEECCCEEEEEECCCCCEEEEEEEC-----------CCCEEEEEECCCCCEEE-EEECCCEEEEEEC
Q ss_conf 99996899999-99977994999998999068996304-----------88758999759996999-9968993999988
Q 001462 147 TIRFTPDGRWV-VSGGFDNVVKVWDLTAGKLLHDFKFH-----------EGHIRSIDFHPLEFLLA-TGSADRTVKFWDL 213 (1074)
Q Consensus 147 sIafSPdG~~L-vSgs~DGsI~IWDl~tgk~i~~l~~h-----------~g~ItsLafSPdg~lLa-TGs~DGtI~IWDl 213 (1074)
+..|+|||++| +++..++.|.+||..+++++..+..+ .+....+.++|++..++ +...++.|.+|+.
T Consensus 113 s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~ 192 (432)
T d1qksa2 113 SKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDY 192 (432)
T ss_dssp CCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEET
T ss_pred ECCCCCCCCEEEEECCCCCEEEEEECCCCCCEEEECCCCCCCCCEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEEEC
T ss_conf 43218888889998178982799907655422540247764352201688850589987899989999816882999984
Q ss_pred CCCCEEEEEC-CCCCCEEEEEEECCCCEEEEEE--CCCEEEEEECCCEEEECCCCCCC-----EEEEEEECCC-CEEEEE
Q ss_conf 9970887517-9988847999916998999997--99499999368723201026876-----1457994599-999999
Q 001462 214 ETFELIGSTR-PEVTGVHAITFHPDGRTLFSGF--DDNLKVYSWEPVICHDSVDMGWS-----TLGDLCINDG-KLLGCS 284 (1074)
Q Consensus 214 ~tge~i~~l~-~~~~~ItsIafSPDG~~LasGs--d~~I~Iwdl~s~~~~~~i~~~~s-----~~~~l~spDG-klLatg 284 (1074)
...+...... .....+..+.|+|+|+++++++ .+.+.+++.........+..+.. .......+.+ ...+..
T Consensus 193 ~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~ 272 (432)
T d1qksa2 193 TDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATS 272 (432)
T ss_dssp TCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEE
T ss_pred CCCCCCEEEEECCCCCCCCCEECCCCCEEEEECCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCEECCCCCCEECCC
T ss_conf 37875227998336754265388988799995166636777614452688872148622456766410148988310213
Q ss_pred E-CCCEEEEEECCCCCEEEEECCCCCCCCCCEEEEEECCCCC
Q ss_conf 8-7992999994799324531278999998631999969999
Q 001462 285 F-YRNSVGIWVADVSHVEPYGVGAPEPDQSICTEVKFNPPGS 325 (1074)
Q Consensus 285 s-~DGsI~IWDld~~~l~~~~l~~~~~~~~~ItsVaFSPDGs 325 (1074)
. .++.|.+|....... ..+...+....|+|+|.
T Consensus 273 ~lg~~~v~~~~~~~~~~--------~~~~~~v~~~~~~~~g~ 306 (432)
T d1qksa2 273 HMGDDSVALIGTDPEGH--------PDNAWKILDSFPALGGG 306 (432)
T ss_dssp BSSSSEEEEEECCTTTC--------TTTBTSEEEEEECSCSC
T ss_pred CCCCCEEEECCCCCCCC--------CCCCCEEEEEEECCCCC
T ss_conf 56883587624566555--------46565777998868997
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.90 E-value=3.7e-18 Score=133.28 Aligned_cols=283 Identities=9% Similarity=-0.072 Sum_probs=176.0
Q ss_pred EECCCCCEEEEEEECCCCCEEEEE----ECCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEEEC--------
Q ss_conf 844799879999912899399999----78990999987999337995079989479999389999999986--------
Q 001462 11 FVAHSANVNCISIGKKACRFLITG----GDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGAS-------- 78 (1074)
Q Consensus 11 L~gHss~VtsIafSPdg~~lLaTG----s~DGtI~IWDi~t~k~l~sl~~hs~~VtsIafSpdg~~LatGs~-------- 78 (1074)
...+.+++.+++++|++.+++++. +..+.|.+||..+++.+..+..+..+ .+.|+|+|++|+++..
T Consensus 16 ~~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~~--~~a~SpDG~~l~va~~~~~~~~~~ 93 (373)
T d2madh_ 16 AGAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKG 93 (373)
T ss_pred CCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEEEEECCCCCEEEEEECCCCC--CEEECCCCCEEEEEEECCCCCCCC
T ss_conf 456789865630189997899973422578765999989999799999579886--079868999899996057753212
Q ss_pred --CCEEEEEECCCCEEEEEEECCCCCE-------EEEEECCCCCEEEEEE--CCCEEEEEECCCCEEEEEEECCCCCEEE
Q ss_conf --9919999869990699980789983-------8999937998999997--8980999988999079998179987489
Q 001462 79 --TGVIKLWDLEESKMVRTLTGHKSNC-------TAVEFHPFGEFFASGC--MDTNLKIWDIRKKGCIHTYKGHTRGINT 147 (1074)
Q Consensus 79 --DG~I~IWDl~sgk~i~tl~~h~~~V-------tsIafSPdg~~LaSgs--~DGsI~IWDi~sg~~i~~lk~h~~~Vss 147 (1074)
++.|.+||..+++.+..+..+.... ..+.|+++++.+++.. .++.+.+|+.......... ....+
T Consensus 94 ~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ 169 (373)
T d2madh_ 94 KRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLL----SSPTC 169 (373)
T ss_pred CCCEEEEEEECCCCCEEEEEECCCCCEEEECCCCCCEEEEECCCCEEEEEECCCCCEEEEECCCCEEEEEE----CCCEE
T ss_conf 45318999977789388897268851368516897089985899379999869874677623687289982----45206
Q ss_pred EEECCCCCEE-EEEECCCEEEEEECCCCCEEEEEEECC------CCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEE
Q ss_conf 9996899999-999779949999989990689963048------875899975999699999689939999889970887
Q 001462 148 IRFTPDGRWV-VSGGFDNVVKVWDLTAGKLLHDFKFHE------GHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIG 220 (1074)
Q Consensus 148 IafSPdG~~L-vSgs~DGsI~IWDl~tgk~i~~l~~h~------g~ItsLafSPdg~lLaTGs~DGtI~IWDl~tge~i~ 220 (1074)
+.|++++..+ ++.+.|+.+.+|+...+........+. .....+.+.+++.++ ..+.++.+.+|+........
T Consensus 170 ~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~ 248 (373)
T d2madh_ 170 YHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIV-WPVYSGKILQADISAAGATN 248 (373)
T ss_pred EEEECCCCCEEEEECCCCEEEEEECCCCEEEEEEEEECCCCCCCCEEEEEEECCCCEEE-EECCCCEEEEEECCCCEEEE
T ss_conf 99962899199999479939999747742667886300366753043458878994299-92589659999768990789
Q ss_pred --EECCCCCCEEEE----------EEECCCCEEEEE-----------ECCCEEEEEECCCEEEECCCCCCCEEEEEEECC
Q ss_conf --517998884799----------991699899999-----------799499999368723201026876145799459
Q 001462 221 --STRPEVTGVHAI----------TFHPDGRTLFSG-----------FDDNLKVYSWEPVICHDSVDMGWSTLGDLCIND 277 (1074)
Q Consensus 221 --~l~~~~~~ItsI----------afSPDG~~LasG-----------sd~~I~Iwdl~s~~~~~~i~~~~s~~~~l~spD 277 (1074)
............ ++++++..++.. ..+.+.+|+.........+..+..+....+++|
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~a~spD 328 (373)
T d2madh_ 249 KAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGHDVDAISVAQD 328 (373)
T ss_pred EEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCEEEEEECCCCCEEEEECCCCCEEEEEECCC
T ss_conf 77630564757866413674133577149975999548882478625898699998999969898668998258999989
Q ss_pred CC--EEEEEECCCEEEEEECCCCCE
Q ss_conf 99--999998799299999479932
Q 001462 278 GK--LLGCSFYRNSVGIWVADVSHV 300 (1074)
Q Consensus 278 Gk--lLatgs~DGsI~IWDld~~~l 300 (1074)
|+ ++++++.|+.|++||...++.
T Consensus 329 G~~~l~vt~~~d~~v~v~D~~tg~~ 353 (373)
T d2madh_ 329 GGPDLYALSAGTEVLHIYDAGAGDQ 353 (373)
T ss_pred CCEEEEEEECCCCEEEEEECCCCCE
T ss_conf 9989999967999299999999989
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.88 E-value=5.4e-18 Score=132.19 Aligned_cols=275 Identities=14% Similarity=0.177 Sum_probs=182.1
Q ss_pred CEEEEEECCCEEEEEECCCCCEEE--EEECCCCCEEEEEECCCCCEEEEEEC-CCEEEEEECCCCEEEEE---EECCCCC
Q ss_conf 399999789909999879993379--95079989479999389999999986-99199998699906999---8078998
Q 001462 29 RFLITGGDDQKVNLWAIGKPTALM--SLCGLSSPVDSVAFDSAEVLVLAGAS-TGVIKLWDLEESKMVRT---LTGHKSN 102 (1074)
Q Consensus 29 ~lLaTGs~DGtI~IWDi~t~k~l~--sl~~hs~~VtsIafSpdg~~LatGs~-DG~I~IWDl~sgk~i~t---l~~h~~~ 102 (1074)
..++++..|+.|++|++.....+. ....+...+..++|+|||++|++++. ++.|.+|++........ ...+...
T Consensus 5 ~v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~ 84 (333)
T d1ri6a_ 5 TVYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGS 84 (333)
T ss_dssp EEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSC
T ss_pred EEEEECCCCCCEEEEEECCCCCEEEEEEECCCCCEEEEEEECCCCEEEEEECCCCEEEEEEEECCCCCEEEEEECCCCCC
T ss_conf 99998789993899998399976999997579988689995897999999778996999999689870798530136998
Q ss_pred EEEEEECCCCCEEEEEEC-CCEEEEEECCCCEEEEE--EECCCCCEEEEEECCCCCEEEEEEC-CCEEEEEECCCCCEEE
Q ss_conf 389999379989999978-98099998899907999--8179987489999689999999977-9949999989990689
Q 001462 103 CTAVEFHPFGEFFASGCM-DTNLKIWDIRKKGCIHT--YKGHTRGINTIRFTPDGRWVVSGGF-DNVVKVWDLTAGKLLH 178 (1074)
Q Consensus 103 VtsIafSPdg~~LaSgs~-DGsI~IWDi~sg~~i~~--lk~h~~~VssIafSPdG~~LvSgs~-DGsI~IWDl~tgk~i~ 178 (1074)
+..++|+|+|+++++++. ++.+.+|+......... ...+...+.++.++|++++++.++. +..|.+|+........
T Consensus 85 p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~ 164 (333)
T d1ri6a_ 85 LTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLV 164 (333)
T ss_dssp CSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEE
T ss_pred CEEEEECCCCCEEEECCCCCCCEEEECCCCCCCEECCCCCCCCCCCEEEEEEECCEEEECCCCCCCEEEEEEECCCCCCE
T ss_conf 54999959998874205688830220011100000010037785314988630101310256554205689732687410
Q ss_pred EEE------ECCCCEEEEEECCCCCEEEEEE-CCCEEEEEECCCCC----EEEEEC------CCCCCEEEEEEECCCCEE
Q ss_conf 963------0488758999759996999996-89939999889970----887517------998884799991699899
Q 001462 179 DFK------FHEGHIRSIDFHPLEFLLATGS-ADRTVKFWDLETFE----LIGSTR------PEVTGVHAITFHPDGRTL 241 (1074)
Q Consensus 179 ~l~------~h~g~ItsLafSPdg~lLaTGs-~DGtI~IWDl~tge----~i~~l~------~~~~~ItsIafSPDG~~L 241 (1074)
... ........+.|++++.+++... ..+...+|+..... ...... ........++++++++++
T Consensus 165 ~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~ 244 (333)
T d1ri6a_ 165 AQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHL 244 (333)
T ss_dssp EEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEE
T ss_pred EEECEEEEEECCCCCCEEEEECCCEEEEEECCCCCCEEEEEECCCCCCEEEEEEEEEEECCCCCCCCCEEEEEECCCCCE
T ss_conf 01000133403887527999602014786204667217885103555202100223430687765531268995156720
Q ss_pred EEEE--CCCEEEEEECCCEEEE----CCCCCCCEEEEEEECCCCEEEEEEC-CCEEEEEECCC--CCEEEE
Q ss_conf 9997--9949999936872320----1026876145799459999999987-99299999479--932453
Q 001462 242 FSGF--DDNLKVYSWEPVICHD----SVDMGWSTLGDLCINDGKLLGCSFY-RNSVGIWVADV--SHVEPY 303 (1074)
Q Consensus 242 asGs--d~~I~Iwdl~s~~~~~----~i~~~~s~~~~l~spDGklLatgs~-DGsI~IWDld~--~~l~~~ 303 (1074)
+... .+.+.+|.+....... .......+....++|||++|++++. ++.|.+|+++. +.++..
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~id~~tG~l~~~ 315 (333)
T d1ri6a_ 245 YACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEK 315 (333)
T ss_dssp EEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEEEE
T ss_pred EEECCCCCEEEEEEECCCCCEEEEEEEECCCCCEEEEEEECCCCEEEEEECCCCEEEEEEEECCCCCEEEE
T ss_conf 55045688278788739997899999967899762899907989999998899939999997999968999
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.88 E-value=5e-19 Score=139.07 Aligned_cols=269 Identities=14% Similarity=0.030 Sum_probs=190.7
Q ss_pred CEEEEEECCCEEEEEECCCCEEEEEEECC--CCCEEEEEECCCCCEEE-EEECCCEEEEEECCCCEEEEEEECCCC----
Q ss_conf 99999986991999986999069998078--99838999937998999-997898099998899907999817998----
Q 001462 71 VLVLAGASTGVIKLWDLEESKMVRTLTGH--KSNCTAVEFHPFGEFFA-SGCMDTNLKIWDIRKKGCIHTYKGHTR---- 143 (1074)
Q Consensus 71 ~~LatGs~DG~I~IWDl~sgk~i~tl~~h--~~~VtsIafSPdg~~La-Sgs~DGsI~IWDi~sg~~i~~lk~h~~---- 143 (1074)
.++++++.|+.|.+||+.+++.+..+..+ ...+.+++|+|||++++ +++.++.|.+||+.+++.+..+..+..
T Consensus 2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~ 81 (337)
T d1pbyb_ 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV 81 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred EEEEEECCCCEEEEEECCCCEEEEEEECCCCCCCCCEEEECCCCCEEEEEECCCCEEEEEECCCCCEEEEEECCCCCCCC
T ss_conf 69999767998999999999499999877889982379999998999999789994999999999298887247773125
Q ss_pred -CEEEEEECCCCCEEEEEE------------CCCEEEEEECCCCCEEEEEEECCCCEEEEEECCCCCEEEEEECCCEEEE
Q ss_conf -748999968999999997------------7994999998999068996304887589997599969999968993999
Q 001462 144 -GINTIRFTPDGRWVVSGG------------FDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKF 210 (1074)
Q Consensus 144 -~VssIafSPdG~~LvSgs------------~DGsI~IWDl~tgk~i~~l~~h~g~ItsLafSPdg~lLaTGs~DGtI~I 210 (1074)
.+..++|+|++++++++. .++.+.+||..++.....+.. ...+..++|+|++.++++++. .+.+
T Consensus 82 ~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~--~~~~ 158 (337)
T d1pbyb_ 82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGLGR--DLHV 158 (337)
T ss_dssp ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEESS--SEEE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCEEEECCCCCCCEEECCCCCCEEEEECCC-CCCCEEEEECCCCCEEEEECC--CCCE
T ss_conf 4025489868775799950477620342034555212035667759884145-687218998688888999717--7505
Q ss_pred EECCCCCEEEEECCCCCCEEEEEEECCCCEEE-------------------------EEECCCEEEEEECCCEEEEC--C
Q ss_conf 98899708875179988847999916998999-------------------------99799499999368723201--0
Q 001462 211 WDLETFELIGSTRPEVTGVHAITFHPDGRTLF-------------------------SGFDDNLKVYSWEPVICHDS--V 263 (1074)
Q Consensus 211 WDl~tge~i~~l~~~~~~ItsIafSPDG~~La-------------------------sGsd~~I~Iwdl~s~~~~~~--i 263 (1074)
||..+++....+..+... ....+.+++..+. ...+..+.+|++..+..... .
T Consensus 159 ~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (337)
T d1pbyb_ 159 MDPEAGTLVEDKPIQSWE-AETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVR 237 (337)
T ss_dssp EETTTTEEEEEECSTTTT-TTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEE
T ss_pred EEEECCCEEEEEECCCCC-CCCEECCCCCEEECCCCCCCEEEEEEEEEEECCCEEEECCCCCCEEEEECCCCCEEEEEEC
T ss_conf 663037278886147754-3311357763140146653124663244410366045403676179998688858889832
Q ss_pred CCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCCCCCEEEEEECCCCCCCEEEEEEEECCCCCEEE
Q ss_conf 26876145799459999999987992999994799324531278999998631999969999210499989614760689
Q 001462 264 DMGWSTLGDLCINDGKLLGCSFYRNSVGIWVADVSHVEPYGVGAPEPDQSICTEVKFNPPGSHSLEKVGIIGRSTSGFRS 343 (1074)
Q Consensus 264 ~~~~s~~~~l~spDGklLatgs~DGsI~IWDld~~~l~~~~l~~~~~~~~~ItsVaFSPDGs~~La~vlavG~stG~lr~ 343 (1074)
..........+.+++.+++.. ++.|.+||+......... .+...+.+++|+|||+ .++++...|. +
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~~~~~~-----~~~~~~~~~~~s~dG~-----~l~v~~~~~~--i 303 (337)
T d1pbyb_ 238 IMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRV-----PLPHSYYSVNVSTDGS-----TVWLGGALGD--L 303 (337)
T ss_dssp ECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEE-----ECSSCCCEEEECTTSC-----EEEEESBSSE--E
T ss_pred CCCCCEEEEEECCCCEEEEEC--CCCEEEEECCCCCEEEEE-----CCCCCEEEEEECCCCC-----EEEEEECCCC--E
T ss_conf 887505888742661399973--552899989889699997-----4899889999978999-----9999949992--9
Q ss_pred EECCCCCCCEEEEE
Q ss_conf 63577643069986
Q 001462 344 TSPDYETKDIKTIY 357 (1074)
Q Consensus 344 ivpD~et~eIv~i~ 357 (1074)
.+.|.++.+.+...
T Consensus 304 ~v~D~~t~~~v~~i 317 (337)
T d1pbyb_ 304 AAYDAETLEKKGQV 317 (337)
T ss_dssp EEEETTTCCEEEEE
T ss_pred EEEECCCCCEEEEE
T ss_conf 99999987698999
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.88 E-value=4.8e-18 Score=132.50 Aligned_cols=289 Identities=12% Similarity=0.118 Sum_probs=192.1
Q ss_pred EEEEEECCCEEEEEECCCCEE---EEEEECCCCCEEEEEECCCCCEEEEEEC-CCEEEEEECCCCEEEE---EEECCCCC
Q ss_conf 999998699199998699906---9998078998389999379989999978-9809999889990799---98179987
Q 001462 72 LVLAGASTGVIKLWDLEESKM---VRTLTGHKSNCTAVEFHPFGEFFASGCM-DTNLKIWDIRKKGCIH---TYKGHTRG 144 (1074)
Q Consensus 72 ~LatGs~DG~I~IWDl~sgk~---i~tl~~h~~~VtsIafSPdg~~LaSgs~-DGsI~IWDi~sg~~i~---~lk~h~~~ 144 (1074)
.++++..++.|++|++..... +..+ .+.+.+..++|+|||++|++++. |+.|.+|++....... ....+...
T Consensus 6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~-~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~ 84 (333)
T d1ri6a_ 6 VYIASPESQQIHVWNLNHEGALTLTQVV-DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGS 84 (333)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSC
T ss_pred EEEECCCCCCEEEEEECCCCCEEEEEEE-CCCCCEEEEEEECCCCEEEEEECCCCEEEEEEEECCCCCEEEEEECCCCCC
T ss_conf 9998789993899998399976999997-579988689995897999999778996999999689870798530136998
Q ss_pred EEEEEECCCCCEEEEEEC-CCEEEEEECCCCCEEEEE--EECCCCEEEEEECCCCCEEEEEE-CCCEEEEEECCCCCEEE
Q ss_conf 489999689999999977-994999998999068996--30488758999759996999996-89939999889970887
Q 001462 145 INTIRFTPDGRWVVSGGF-DNVVKVWDLTAGKLLHDF--KFHEGHIRSIDFHPLEFLLATGS-ADRTVKFWDLETFELIG 220 (1074)
Q Consensus 145 VssIafSPdG~~LvSgs~-DGsI~IWDl~tgk~i~~l--~~h~g~ItsLafSPdg~lLaTGs-~DGtI~IWDl~tge~i~ 220 (1074)
+..++|+|||++|++++. ++.+.+|+.......... ..+...+.++.++|++.+++.++ .+..|.+|+........
T Consensus 85 p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~ 164 (333)
T d1ri6a_ 85 LTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLV 164 (333)
T ss_dssp CSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEE
T ss_pred CEEEEECCCCCEEEECCCCCCCEEEECCCCCCCEECCCCCCCCCCCEEEEEEECCEEEECCCCCCCEEEEEEECCCCCCE
T ss_conf 54999959998874205688830220011100000010037785314988630101310256554205689732687410
Q ss_pred ------EECCCCCCEEEEEEECCCCEEEEEE--CCCEEEEEECCCEEEE-------C----CCCCCCEEEEEEECCCCEE
Q ss_conf ------5179988847999916998999997--9949999936872320-------1----0268761457994599999
Q 001462 221 ------STRPEVTGVHAITFHPDGRTLFSGF--DDNLKVYSWEPVICHD-------S----VDMGWSTLGDLCINDGKLL 281 (1074)
Q Consensus 221 ------~l~~~~~~ItsIafSPDG~~LasGs--d~~I~Iwdl~s~~~~~-------~----i~~~~s~~~~l~spDGklL 281 (1074)
...........++|++++.+++... .+...+|.+....... . ...........+.+|++++
T Consensus 165 ~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~ 244 (333)
T d1ri6a_ 165 AQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHL 244 (333)
T ss_dssp EEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEE
T ss_pred EEECEEEEEECCCCCCEEEEECCCEEEEEECCCCCCEEEEEECCCCCCEEEEEEEEEEECCCCCCCCCEEEEEECCCCCE
T ss_conf 01000133403887527999602014786204667217885103555202100223430687765531268995156720
Q ss_pred EEEE-CCCEEEEEECCCCCEEEEECCCCCCCCCCEEEEEECCCCCCCEEEEEEEECCCCCEEEEECCCCCCCEEEEEECC
Q ss_conf 9998-799299999479932453127899999863199996999921049998961476068963577643069986369
Q 001462 282 GCSF-YRNSVGIWVADVSHVEPYGVGAPEPDQSICTEVKFNPPGSHSLEKVGIIGRSTSGFRSTSPDYETKDIKTIYVDS 360 (1074)
Q Consensus 282 atgs-~DGsI~IWDld~~~l~~~~l~~~~~~~~~ItsVaFSPDGs~~La~vlavG~stG~lr~ivpD~et~eIv~i~iDs 360 (1074)
.... .++.+.+|+++........... ......+..++|+|||+. +.+.+...+.++.+..|.+++.+..+..-.
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~p~~~a~spDGk~----l~va~~~~~~v~v~~id~~tG~l~~~~~~~ 319 (333)
T d1ri6a_ 245 YACDRTASLITVFSVSEDGSVLSKEGF-QPTETQPRGFNVDHSGKY----LIAAGQKSHHISVYEIVGEQGLLHEKGRYA 319 (333)
T ss_dssp EEEETTTTEEEEEEECTTSCCEEEEEE-EECSSSCCCEEECTTSSE----EEEECTTTCEEEEEEEETTTTEEEEEEEEE
T ss_pred EEECCCCCEEEEEEECCCCCEEEEEEE-ECCCCCEEEEEEECCCCE----EEEEECCCCEEEEEEEECCCCCEEEEEECC
T ss_conf 550456882787887399978999999-678997628999079899----999988999399999979999689998334
Q ss_pred CCCCCC
Q ss_conf 999421
Q 001462 361 TGGKPV 366 (1074)
Q Consensus 361 ~gGEpv 366 (1074)
.|+.|+
T Consensus 320 ~g~~p~ 325 (333)
T d1ri6a_ 320 VGQGPM 325 (333)
T ss_dssp CSSSCC
T ss_pred CCCCCC
T ss_conf 799985
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.88 E-value=2e-19 Score=141.76 Aligned_cols=278 Identities=9% Similarity=-0.033 Sum_probs=192.8
Q ss_pred EEECCCCCEEEEEECCCEEEEEECCCCEEEEEEE-CCCCCEEEEEECCCCCEEEEE-ECCCEEEEEECCCCEEEEEEECC
Q ss_conf 9993899999999869919999869990699980-789983899993799899999-78980999988999079998179
Q 001462 64 VAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLT-GHKSNCTAVEFHPFGEFFASG-CMDTNLKIWDIRKKGCIHTYKGH 141 (1074)
Q Consensus 64 IafSpdg~~LatGs~DG~I~IWDl~sgk~i~tl~-~h~~~VtsIafSPdg~~LaSg-s~DGsI~IWDi~sg~~i~~lk~h 141 (1074)
++|++++++|++++.++.|.+||+.+++.+.++. .+.....+++|+|||++++++ ..++.|++||+.+++.+..+...
T Consensus 2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~ 81 (346)
T d1jmxb_ 2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLS 81 (346)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESC
T ss_pred CCCCCCCCEEEEECCCCEEEEEECCCCCEEEEEECCCCCCCCEEEECCCCCEEEEEECCCCCEEEEECCCCEEEEEECCC
T ss_conf 55889996999986999799999999989999994899970459997898999999789993999967567131231036
Q ss_pred CC------CEEEEEECCCCCEEEEEE------------CCCEEEEEECCCCCEEEEEEEC--CCCEEEEEECCCCCEEEE
Q ss_conf 98------748999968999999997------------7994999998999068996304--887589997599969999
Q 001462 142 TR------GINTIRFTPDGRWVVSGG------------FDNVVKVWDLTAGKLLHDFKFH--EGHIRSIDFHPLEFLLAT 201 (1074)
Q Consensus 142 ~~------~VssIafSPdG~~LvSgs------------~DGsI~IWDl~tgk~i~~l~~h--~g~ItsLafSPdg~lLaT 201 (1074)
.. .+..++|+|||+++++++ .++.+.+|+..+++....+..+ ...+..+.+++++.+++.
T Consensus 82 ~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (346)
T d1jmxb_ 82 SVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVA 161 (346)
T ss_dssp CSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEEE
T ss_pred CCCCCCCCCEEEEEEECCCCEEEEEECCCCCEEEEECCCCCEEEEEECCCCEEEEEEEEEECCCCEEEEEECCCCEEEEE
T ss_conf 54345477417999905888899970577521565146762489985256326568873102474399995278789984
Q ss_pred EECCCEEEEEECCCCCEEEEECCCCCCEEEEEEECCCCEEEEE---------------------------ECCCEEEEEE
Q ss_conf 9689939999889970887517998884799991699899999---------------------------7994999993
Q 001462 202 GSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSG---------------------------FDDNLKVYSW 254 (1074)
Q Consensus 202 Gs~DGtI~IWDl~tge~i~~l~~~~~~ItsIafSPDG~~LasG---------------------------sd~~I~Iwdl 254 (1074)
++.+.+|++.+++.+..+..+. ....+.++|++..++.. ....+.+|++
T Consensus 162 ---~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (346)
T d1jmxb_ 162 ---GPDIYKMDVKTGKYTVALPLRN-WNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDL 237 (346)
T ss_dssp ---SSSEEEECTTTCCEEEEECSTT-CCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEET
T ss_pred ---CCCCEEEECCCCCEEEEEECCC-CCCCEEEECCCCEEEEEECCCCCEEEEEEEEEECCCCEEEEECCCCCEEEEEEC
T ss_conf ---7962699806997899996489-866237712552899986499816765123111267325754047834999977
Q ss_pred CCCEEEECC--CCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCCCCCEEEEEECCCCCCCEEEEE
Q ss_conf 687232010--268761457994599999999879929999947993245312789999986319999699992104999
Q 001462 255 EPVICHDSV--DMGWSTLGDLCINDGKLLGCSFYRNSVGIWVADVSHVEPYGVGAPEPDQSICTEVKFNPPGSHSLEKVG 332 (1074)
Q Consensus 255 ~s~~~~~~i--~~~~s~~~~l~spDGklLatgs~DGsI~IWDld~~~l~~~~l~~~~~~~~~ItsVaFSPDGs~~La~vl 332 (1074)
......... ..........+++++.+++... ++.|.+||...+...... .....+.+++|+|||+ .+
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~v~d~~~~~~~~~~-----~~~~~~~~va~s~DG~-----~l 306 (346)
T d1jmxb_ 238 KTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQRKLIKAA-----NLDHTYYCVAFDKKGD-----KL 306 (346)
T ss_dssp TTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE-ESEEEEEETTTTEEEEEE-----ECSSCCCEEEECSSSS-----CE
T ss_pred CCCCEEEEEEECCCCEEEEEEEECCCCEEEEEC-CCEEEEEECCCCCEEEEE-----CCCCCEEEEEECCCCC-----EE
T ss_conf 788368787631566068889717997899942-983899989999399997-----4999778999968999-----99
Q ss_pred EEECCCCCEEEEECCCCCCCEEEEEE
Q ss_conf 89614760689635776430699863
Q 001462 333 IIGRSTSGFRSTSPDYETKDIKTIYV 358 (1074)
Q Consensus 333 avG~stG~lr~ivpD~et~eIv~i~i 358 (1074)
+++...|. ..+.|.++.+.+....
T Consensus 307 ~v~~~d~~--v~v~D~~t~~~i~~i~ 330 (346)
T d1jmxb_ 307 YLGGTFND--LAVFNPDTLEKVKNIK 330 (346)
T ss_dssp EEESBSSE--EEEEETTTTEEEEEEE
T ss_pred EEEECCCC--EEEEECCCCCEEEEEE
T ss_conf 99948992--9999996587979998
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.86 E-value=1.8e-16 Score=122.07 Aligned_cols=289 Identities=9% Similarity=-0.088 Sum_probs=196.0
Q ss_pred ECCCCCEEEEEECCCCCEEEEEE-----CCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEEC---------
Q ss_conf 07998947999938999999998-----6991999986999069998078998389999379989999978---------
Q 001462 55 CGLSSPVDSVAFDSAEVLVLAGA-----STGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCM--------- 120 (1074)
Q Consensus 55 ~~hs~~VtsIafSpdg~~LatGs-----~DG~I~IWDl~sgk~i~tl~~h~~~VtsIafSPdg~~LaSgs~--------- 120 (1074)
..+..++..++++|+++.+++.. ..+.|.+||..+++.+..+..+... .+.|+|||+++++++.
T Consensus 17 ~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~~--~~a~SpDG~~l~va~~~~~~~~~~~ 94 (373)
T d2madh_ 17 GAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGK 94 (373)
T ss_pred CCCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEEEEECCCCCEEEEEECCCCC--CEEECCCCCEEEEEEECCCCCCCCC
T ss_conf 56789865630189997899973422578765999989999799999579886--0798689998999960577532124
Q ss_pred -CCEEEEEECCCCEEEEEEECCCCCE-------EEEEECCCCCEEEEEE--CCCEEEEEECCCCCEEEEEEECCCCEEEE
Q ss_conf -9809999889990799981799874-------8999968999999997--79949999989990689963048875899
Q 001462 121 -DTNLKIWDIRKKGCIHTYKGHTRGI-------NTIRFTPDGRWVVSGG--FDNVVKVWDLTAGKLLHDFKFHEGHIRSI 190 (1074)
Q Consensus 121 -DGsI~IWDi~sg~~i~~lk~h~~~V-------ssIafSPdG~~LvSgs--~DGsI~IWDl~tgk~i~~l~~h~g~ItsL 190 (1074)
++.|.+||..+++.+..+..+.... ..+.|+++++.++... .++.+.+|+....+..... ....++
T Consensus 95 ~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 170 (373)
T d2madh_ 95 RTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLL----SSPTCY 170 (373)
T ss_pred CCEEEEEEECCCCCEEEEEECCCCCEEEECCCCCCEEEEECCCCEEEEEECCCCCEEEEECCCCEEEEEE----CCCEEE
T ss_conf 5318999977789388897268851368516897089985899379999869874677623687289982----452069
Q ss_pred EECCCCCEE-EEEECCCEEEEEECCCCCEEEEECCC------CCCEEEEEEECCCCEEEEEECCCEEEEEECCCEEEECC
Q ss_conf 975999699-99968993999988997088751799------88847999916998999997994999993687232010
Q 001462 191 DFHPLEFLL-ATGSADRTVKFWDLETFELIGSTRPE------VTGVHAITFHPDGRTLFSGFDDNLKVYSWEPVICHDSV 263 (1074)
Q Consensus 191 afSPdg~lL-aTGs~DGtI~IWDl~tge~i~~l~~~------~~~ItsIafSPDG~~LasGsd~~I~Iwdl~s~~~~~~i 263 (1074)
.++|++..+ ++.+.|+.+.+|+...+......... ......+.+.+++.+++.+.++.+.+|+..........
T Consensus 171 ~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 250 (373)
T d2madh_ 171 HIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKA 250 (373)
T ss_pred EEECCCCCEEEEECCCCEEEEEECCCCEEEEEEEEECCCCCCCCEEEEEEECCCCEEEEECCCCEEEEEECCCCEEEEEE
T ss_conf 99628991999994799399997477426678863003667530434588789942999258965999976899078977
Q ss_pred CCC-------------CCEEEEEEECC----------CCEEEEEECCCEEEEEECCCCCEEEEECCCCCCCCCCEEEEEE
Q ss_conf 268-------------76145799459----------9999999879929999947993245312789999986319999
Q 001462 264 DMG-------------WSTLGDLCIND----------GKLLGCSFYRNSVGIWVADVSHVEPYGVGAPEPDQSICTEVKF 320 (1074)
Q Consensus 264 ~~~-------------~s~~~~l~spD----------GklLatgs~DGsI~IWDld~~~l~~~~l~~~~~~~~~ItsVaF 320 (1074)
... .......+.++ +..++....++.+.+||...+...... .+...+..++|
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~-----~~~~~~~~~a~ 325 (373)
T d2madh_ 251 PIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQI-----SLGHDVDAISV 325 (373)
T ss_pred EECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCEEEEEECCCCCEEEEE-----CCCCCEEEEEE
T ss_conf 6305647578664136741335771499759995488824786258986999989999698986-----68998258999
Q ss_pred CCCCCCCEEEEEEEECCCCCEEEEECCCCCCCEEEEEEC
Q ss_conf 699992104999896147606896357764306998636
Q 001462 321 NPPGSHSLEKVGIIGRSTSGFRSTSPDYETKDIKTIYVD 359 (1074)
Q Consensus 321 SPDGs~~La~vlavG~stG~lr~ivpD~et~eIv~i~iD 359 (1074)
+|||+.++ .+.+...+ ...+.|..+++++.....
T Consensus 326 spDG~~~l---~vt~~~d~--~v~v~D~~tg~~~~~~~~ 359 (373)
T d2madh_ 326 AQDGGPDL---YALSAGTE--VLHIYDAGAGDQDQSTVE 359 (373)
T ss_pred CCCCCEEE---EEEECCCC--EEEEEECCCCCEEEEECC
T ss_conf 98999899---99967999--299999999989999888
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.86 E-value=9.9e-18 Score=130.42 Aligned_cols=299 Identities=10% Similarity=-0.061 Sum_probs=194.0
Q ss_pred CEEEEEEECCCCCEEEEE----ECCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEEE----------CCCEE
Q ss_conf 879999912899399999----7899099998799933799507998947999938999999998----------69919
Q 001462 17 NVNCISIGKKACRFLITG----GDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGA----------STGVI 82 (1074)
Q Consensus 17 ~VtsIafSPdg~~lLaTG----s~DGtI~IWDi~t~k~l~sl~~hs~~VtsIafSpdg~~LatGs----------~DG~I 82 (1074)
++.-.+.+||+.+++++. ..+..|.+||..+++.+..+..+..+ .++|+|+|++|++.+ .++.|
T Consensus 3 p~~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~~~--~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v 80 (355)
T d2bbkh_ 3 PRILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYV 80 (355)
T ss_dssp CCBCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEE
T ss_pred CCEEEEECCCCCEEEEEECCCCCCCCEEEEEECCCCCEEEEEECCCCC--CEEECCCCCEEEEEECCCCCCCCCCCCCEE
T ss_conf 717476589999999982664777671999999999499999899998--569948999999996777642015899989
Q ss_pred EEEECCCCEEEEEEECCC-------CCEEEEEECCCCCEEEEEEC--CCEEEEEECCCCEEEEEEECCCCCEEEEEECCC
Q ss_conf 999869990699980789-------98389999379989999978--980999988999079998179987489999689
Q 001462 83 KLWDLEESKMVRTLTGHK-------SNCTAVEFHPFGEFFASGCM--DTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPD 153 (1074)
Q Consensus 83 ~IWDl~sgk~i~tl~~h~-------~~VtsIafSPdg~~LaSgs~--DGsI~IWDi~sg~~i~~lk~h~~~VssIafSPd 153 (1074)
.+||..+++....+..+. .....+.|++++++++++.. +..+.+|+..++..+..+..+... .... ..
T Consensus 81 ~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~ 157 (355)
T d2bbkh_ 81 EVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCY-HIFP--TA 157 (355)
T ss_dssp EEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEE-EEEE--EE
T ss_pred EEEECCCCCEEEEEECCCCCEEECCCCCCEEEEECCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCC-EEEE--CC
T ss_conf 99999999798898058864031179873499933887157732798820454305788376677058740-4730--69
Q ss_pred CCEEEEEECCCEEEEEECCCCCEEEEEE------ECCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEE--ECCC
Q ss_conf 9999999779949999989990689963------0488758999759996999996899399998899708875--1799
Q 001462 154 GRWVVSGGFDNVVKVWDLTAGKLLHDFK------FHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGS--TRPE 225 (1074)
Q Consensus 154 G~~LvSgs~DGsI~IWDl~tgk~i~~l~------~h~g~ItsLafSPdg~lLaTGs~DGtI~IWDl~tge~i~~--l~~~ 225 (1074)
...++..+.|+...++..........+. .+...+....+.+++..++.++.++.+++|++..+..... ...+
T Consensus 158 ~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 237 (355)
T d2bbkh_ 158 PDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEAL 237 (355)
T ss_dssp TTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESS
T ss_pred CCCEEEECCCCCEEEEEECCCCEEEEEECCCCCCEECCEEEECCCCCCCCEEEEECCCCEEEEEECCCCCEEEEECCCCC
T ss_conf 96369993899989998347873799962433300011061021538997388746998299996589907998445784
Q ss_pred ----------CCCEEEEEEECCCCEEEEEEC-----------CCEEEEEECCCEEEECCCCCCCEEEEEEECCCC--EEE
Q ss_conf ----------888479999169989999979-----------949999936872320102687614579945999--999
Q 001462 226 ----------VTGVHAITFHPDGRTLFSGFD-----------DNLKVYSWEPVICHDSVDMGWSTLGDLCINDGK--LLG 282 (1074)
Q Consensus 226 ----------~~~ItsIafSPDG~~LasGsd-----------~~I~Iwdl~s~~~~~~i~~~~s~~~~l~spDGk--lLa 282 (1074)
......+++++++..++.... +.+.+|+.........+..+..+....+++||+ +++
T Consensus 238 ~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~~~~~~~~a~spDG~~~l~v 317 (355)
T d2bbkh_ 238 TEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYA 317 (355)
T ss_dssp CHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSSSCEEEE
T ss_pred CCCEEEEEEECCCEEEEEEECCCCEEEEEECCCCCEEECCCCCEEEEEECCCCCEEEEECCCCCEEEEEECCCCCEEEEE
T ss_conf 41268543303510899980799767887406871265179975999867888498996689987799992899969999
Q ss_pred EEECCCEEEEEECCCCCEEEEECCCCCCCCCCEEEEEECCCC
Q ss_conf 998799299999479932453127899999863199996999
Q 001462 283 CSFYRNSVGIWVADVSHVEPYGVGAPEPDQSICTEVKFNPPG 324 (1074)
Q Consensus 283 tgs~DGsI~IWDld~~~l~~~~l~~~~~~~~~ItsVaFSPDG 324 (1074)
++..|+.|.+||...++..... ..+......+.+.++|
T Consensus 318 ~~~~d~~i~v~D~~tg~~~~~i----~~~G~~p~~i~~~d~~ 355 (355)
T d2bbkh_ 318 LSTGDKTLYIHDAESGEELRSV----NQLGHGPQVITTADMG 355 (355)
T ss_dssp EETTTTEEEEEETTTCCEEEEE----CCCCSSCCEEECCCCC
T ss_pred EECCCCEEEEEECCCCCEEEEE----ECCCCCCCEEEECCCC
T ss_conf 9789998999999999899999----2869796589969999
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.80 E-value=9.2e-16 Score=117.30 Aligned_cols=304 Identities=10% Similarity=0.085 Sum_probs=179.3
Q ss_pred EEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEC-----CCCCEEEEEECCCCCEEEEEEC---------CCEEEE
Q ss_conf 99999128993999997899099998799933799507-----9989479999389999999986---------991999
Q 001462 19 NCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCG-----LSSPVDSVAFDSAEVLVLAGAS---------TGVIKL 84 (1074)
Q Consensus 19 tsIafSPdg~~lLaTGs~DGtI~IWDi~t~k~l~sl~~-----hs~~VtsIafSpdg~~LatGs~---------DG~I~I 84 (1074)
..+.|.+++ .+++. .++.+.+||..+++....+.. +...|.++.|+||+++|+.++. ++.+.+
T Consensus 20 ~~~~W~~d~-~~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l 96 (470)
T d2bgra1 20 YSLRWISDH-EYLYK--QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDI 96 (470)
T ss_dssp CCCEECSSS-EEEEE--SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEE
T ss_pred CCCEECCCC-EEEEE--CCCCEEEEECCCCCEEEEECHHHHHHCCCCCCEEEECCCCCEEEEEECCCCEEEECCCCEEEE
T ss_conf 578968999-79997--599499998899978999701564431676540599898897999977710001046734999
Q ss_pred EECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEEECC------------------CCCEE
Q ss_conf 986999069998078998389999379989999978980999988999079998179------------------98748
Q 001462 85 WDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGH------------------TRGIN 146 (1074)
Q Consensus 85 WDl~sgk~i~tl~~h~~~VtsIafSPdg~~LaSgs~DGsI~IWDi~sg~~i~~lk~h------------------~~~Vs 146 (1074)
||+.+++. ..+..+...+..+.|+|+|++++.. .++.+++|+...+......... .+...
T Consensus 97 ~d~~~~~~-~~l~~~~~~~~~~~~SPDG~~ia~~-~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~ 174 (470)
T d2bgra1 97 YDLNKRQL-ITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYS 174 (470)
T ss_dssp EETTTTEE-CCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSB
T ss_pred EECCCCCC-CCCCCCCCCCCCCCCCCCCCEEEEE-ECCCCEEEECCCCCEEEEEECCCCCCCCCCCCCEEEEEEECCCCC
T ss_conf 98988851-3124687423101014676413575-146413798899946532101477740535432011210047765
Q ss_pred EEEECCCCCEEEEEECCCE-EEEEE-----------------------------------CCCCCEEEEEE---------
Q ss_conf 9999689999999977994-99999-----------------------------------89990689963---------
Q 001462 147 TIRFTPDGRWVVSGGFDNV-VKVWD-----------------------------------LTAGKLLHDFK--------- 181 (1074)
Q Consensus 147 sIafSPdG~~LvSgs~DGs-I~IWD-----------------------------------l~tgk~i~~l~--------- 181 (1074)
.+.|+|||++|+....|.. +..|. +..+.......
T Consensus 175 ~~~wSPDGk~ia~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 254 (470)
T d2bgra1 175 ALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPAS 254 (470)
T ss_dssp CEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEEGGGCCSSSCCCEEEECCCHH
T ss_pred CCEECCCCCCCCEEEECCCCCCEEEEEEECCCCCCCCEEEEECCCCCCCCCCCCEEEEEECCCCCEEEECCCCCCCCCCC
T ss_conf 30799998722026863776706998766047778871354036654546886257999988861455203322478633
Q ss_pred --ECCCCEEEEEECCCCCEEEEEE-CCC-----EEEEEECCCCCEEEEEC------CCCC-----CEEEEEEECCCC--E
Q ss_conf --0488758999759996999996-899-----39999889970887517------9988-----847999916998--9
Q 001462 182 --FHEGHIRSIDFHPLEFLLATGS-ADR-----TVKFWDLETFELIGSTR------PEVT-----GVHAITFHPDGR--T 240 (1074)
Q Consensus 182 --~h~g~ItsLafSPdg~lLaTGs-~DG-----tI~IWDl~tge~i~~l~------~~~~-----~ItsIafSPDG~--~ 240 (1074)
.....+..+.|.+++.+++... ..+ .+..+|..++....... .... ......|.+++. +
T Consensus 255 ~~~~~~~~~~~~w~~~~~~~~~~~~r~~~~~~~~~~~~d~~tg~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 334 (470)
T d2bgra1 255 MLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFY 334 (470)
T ss_dssp HHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEE
T ss_pred CCCCCCEEEEEEECCCCCEEEEEEECCCCCEEEEEEEECCCCCCEEEEEEEEEEEEECCCEEECCCCCCCEEEECCCCCE
T ss_conf 47898667788876878334787304688159999996188894789998751466214335313577724542378847
Q ss_pred EEEEE-CCC--EEEEEECCCEEEECCCCCCCEEEEEEECCCCEE-EEEECC----CEEEEEEC--CCCCEEEEECCCCCC
Q ss_conf 99997-994--999993687232010268761457994599999-999879----92999994--799324531278999
Q 001462 241 LFSGF-DDN--LKVYSWEPVICHDSVDMGWSTLGDLCINDGKLL-GCSFYR----NSVGIWVA--DVSHVEPYGVGAPEP 310 (1074)
Q Consensus 241 LasGs-d~~--I~Iwdl~s~~~~~~i~~~~s~~~~l~spDGklL-atgs~D----GsI~IWDl--d~~~l~~~~l~~~~~ 310 (1074)
++.+. ++. |++|+.+...........+.+..... .+++.+ +++..+ +.-+||.+ +.+............
T Consensus 335 ~~~s~~dg~~~ly~~~~~g~~~~~lt~g~~~v~~~~~-~d~~~iyf~a~~~~~~p~~~~ly~v~~~g~~~~~~lt~~~~~ 413 (470)
T d2bgra1 335 KIISNEEGYRHICYFQIDKKDCTFITKGTWEVIGIEA-LTSDYLYYISNEYKGMPGGRNLYKIQLSDYTKVTCLSCELNP 413 (470)
T ss_dssp EEEECTTSCEEEEEEETTCSCCEESCCSSSCEEEEEE-ECSSEEEEEESCGGGCTTCBEEEEEETTCTTCEEESSTTTST
T ss_pred EEEECCCCCCEEEEEECCCCCEEEECCCCEEEEEEEE-ECCCEEEEEEECCCCCCCEEEEEEEECCCCCCEEEECCCCCC
T ss_conf 9874367576459995268730451169804878789-779999999956899835179999988899860570354358
Q ss_pred CCCCEEEEEECCCCCCCE
Q ss_conf 998631999969999210
Q 001462 311 DQSICTEVKFNPPGSHSL 328 (1074)
Q Consensus 311 ~~~~ItsVaFSPDGs~~L 328 (1074)
+...+.+++|||||+.++
T Consensus 414 ~~~~~~s~~fSpdgky~~ 431 (470)
T d2bgra1 414 ERCQYYSVSFSKEAKYYQ 431 (470)
T ss_dssp TTBCBEEEEECTTSSEEE
T ss_pred CCCCEEEEEECCCCCEEE
T ss_conf 889879999998999999
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.75 E-value=1.1e-14 Score=110.14 Aligned_cols=289 Identities=11% Similarity=-0.061 Sum_probs=182.4
Q ss_pred CEEEEEECCCCCEEEEEE-----CCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEE----------CCCEE
Q ss_conf 947999938999999998-----699199998699906999807899838999937998999997----------89809
Q 001462 60 PVDSVAFDSAEVLVLAGA-----STGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGC----------MDTNL 124 (1074)
Q Consensus 60 ~VtsIafSpdg~~LatGs-----~DG~I~IWDl~sgk~i~tl~~h~~~VtsIafSPdg~~LaSgs----------~DGsI 124 (1074)
++...+.+|+++.+++.. .+..|.+||..+++.+..+..+..+ .++|+|+++++++++ .++.|
T Consensus 3 p~~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~~~--~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v 80 (355)
T d2bbkh_ 3 PRILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYV 80 (355)
T ss_dssp CCBCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEE
T ss_pred CCEEEEECCCCCEEEEEECCCCCCCCEEEEEECCCCCEEEEEECCCCC--CEEECCCCCEEEEEECCCCCCCCCCCCCEE
T ss_conf 717476589999999982664777671999999999499999899998--569948999999996777642015899989
Q ss_pred EEEECCCCEEEEEEECCCC-------CEEEEEECCCCCEEEEEE--CCCEEEEEECCCCCEEEEEEECCCC-------EE
Q ss_conf 9998899907999817998-------748999968999999997--7994999998999068996304887-------58
Q 001462 125 KIWDIRKKGCIHTYKGHTR-------GINTIRFTPDGRWVVSGG--FDNVVKVWDLTAGKLLHDFKFHEGH-------IR 188 (1074)
Q Consensus 125 ~IWDi~sg~~i~~lk~h~~-------~VssIafSPdG~~LvSgs--~DGsI~IWDl~tgk~i~~l~~h~g~-------It 188 (1074)
.+||..+++.+..+..+.. ....++|++++++++++. .+..+.+|+..+++.+..+..+... ..
T Consensus 81 ~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (355)
T d2bbkh_ 81 EVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDT 160 (355)
T ss_dssp EEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTE
T ss_pred EEEECCCCCEEEEEECCCCCEEECCCCCCEEEEECCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCCEEEECCCCC
T ss_conf 99999999798898058864031179873499933887157732798820454305788376677058740473069963
Q ss_pred EEEECCCCCEEEEEE-CCCEEEEEECCCCCEEEEECCCCCCEEEEEEECCCCEEEEEE-CCCEEEEEECCCEEEECC---
Q ss_conf 999759996999996-899399998899708875179988847999916998999997-994999993687232010---
Q 001462 189 SIDFHPLEFLLATGS-ADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGF-DDNLKVYSWEPVICHDSV--- 263 (1074)
Q Consensus 189 sLafSPdg~lLaTGs-~DGtI~IWDl~tge~i~~l~~~~~~ItsIafSPDG~~LasGs-d~~I~Iwdl~s~~~~~~i--- 263 (1074)
.+.+++++..++... .++.+.+++...... .+...+....+.+++..++.+. ++.+++|++.........
T Consensus 161 ~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 235 (355)
T d2bbkh_ 161 FFMHCRDGSLAKVAFGTEGTPEITHTEVFHP-----EDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVE 235 (355)
T ss_dssp EEEEETTSCEEEEECCSSSCCEEEECCCCSC-----TTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEE
T ss_pred EEEECCCCCEEEEEECCCCEEEEEECCCCCC-----EECCEEEECCCCCCCCEEEEECCCCEEEEEECCCCCEEEEECCC
T ss_conf 6999389998999834787379996243330-----00110610215389973887469982999965899079984457
Q ss_pred -------CCC---CCEEEEEEECCCCEEEEEECC----------CEEEEEECCCCCEEEEECCCCCCCCCCEEEEEECCC
Q ss_conf -------268---761457994599999999879----------929999947993245312789999986319999699
Q 001462 264 -------DMG---WSTLGDLCINDGKLLGCSFYR----------NSVGIWVADVSHVEPYGVGAPEPDQSICTEVKFNPP 323 (1074)
Q Consensus 264 -------~~~---~s~~~~l~spDGklLatgs~D----------GsI~IWDld~~~l~~~~l~~~~~~~~~ItsVaFSPD 323 (1074)
... .......+.+++..++....+ ..|.+||...+...... .....+.+++|+||
T Consensus 236 ~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~-----~~~~~~~~~a~spD 310 (355)
T d2bbkh_ 236 ALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKF-----EMGHEIDSINVSQD 310 (355)
T ss_dssp SSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEE-----EEEEEECEEEECCS
T ss_pred CCCCCEEEEEEECCCEEEEEEECCCCEEEEEECCCCCEEECCCCCEEEEEECCCCCEEEEE-----CCCCCEEEEEECCC
T ss_conf 8441268543303510899980799767887406871265179975999867888498996-----68998779999289
Q ss_pred CCCCEEEEEEEECCCCCEEEEECCCCCCCEEEEEECCCCCCCC
Q ss_conf 9921049998961476068963577643069986369999421
Q 001462 324 GSHSLEKVGIIGRSTSGFRSTSPDYETKDIKTIYVDSTGGKPV 366 (1074)
Q Consensus 324 Gs~~La~vlavG~stG~lr~ivpD~et~eIv~i~iDs~gGEpv 366 (1074)
|+.++ .+.+...+ .+.+.|.+++++...... .|..|.
T Consensus 311 G~~~l---~v~~~~d~--~i~v~D~~tg~~~~~i~~-~G~~p~ 347 (355)
T d2bbkh_ 311 EKPLL---YALSTGDK--TLYIHDAESGEELRSVNQ-LGHGPQ 347 (355)
T ss_dssp SSCEE---EEEETTTT--EEEEEETTTCCEEEEECC-CCSSCC
T ss_pred CCEEE---EEEECCCC--EEEEEECCCCCEEEEEEC-CCCCCC
T ss_conf 99699---99978999--899999999989999928-697965
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.72 E-value=8.7e-15 Score=110.79 Aligned_cols=282 Identities=9% Similarity=-0.069 Sum_probs=182.7
Q ss_pred CCCCEEEEEEECCCCCEEEE--EECCC--EEEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEEE----------CC
Q ss_conf 79987999991289939999--97899--099998799933799507998947999938999999998----------69
Q 001462 14 HSANVNCISIGKKACRFLIT--GGDDQ--KVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGA----------ST 79 (1074)
Q Consensus 14 Hss~VtsIafSPdg~~lLaT--Gs~DG--tI~IWDi~t~k~l~sl~~hs~~VtsIafSpdg~~LatGs----------~D 79 (1074)
+.+....++..+++.+..++ ...+| .+.+||..+++.+..+..+..+ .+.|+|+++.|++.+ .+
T Consensus 18 ~~g~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d 95 (368)
T d1mdah_ 18 SDGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRT 95 (368)
T ss_dssp CCCCCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEE
T ss_pred CCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEECCCCCEEEEEECCCCC--CCEECCCCCEEEEECCCCCCCCCCCCC
T ss_conf 679866645589876126972045788621799708998377888578777--513989998899975567640103567
Q ss_pred CEEEEEECCCCEEEEEEECCCC-------CEEEEEECCCCCEEEEEE-CCCEEEEEECCCCEEEEEEECCCCCEEEEEEC
Q ss_conf 9199998699906999807899-------838999937998999997-89809999889990799981799874899996
Q 001462 80 GVIKLWDLEESKMVRTLTGHKS-------NCTAVEFHPFGEFFASGC-MDTNLKIWDIRKKGCIHTYKGHTRGINTIRFT 151 (1074)
Q Consensus 80 G~I~IWDl~sgk~i~tl~~h~~-------~VtsIafSPdg~~LaSgs-~DGsI~IWDi~sg~~i~~lk~h~~~VssIafS 151 (1074)
+.|.+||..+++....+..+.. ....+.|+|||++++++. .++.+.+||+.+++....+..+..... +.
T Consensus 96 ~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~---~~ 172 (368)
T d1mdah_ 96 DYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHI---HP 172 (368)
T ss_dssp EEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCC---EE
T ss_pred CEEEEEECCCCCEEEEECCCCCCEECCCCCCCCEEECCCCCEEEEEECCCCEEEEEECCCCCEEEEEECCCCCEE---CC
T ss_conf 869999899993830643785421024688640588789989999968998599998998938678604675237---46
Q ss_pred CCCCEEEEEECCCEEEEEECCCCCEEEEE------EECCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEC--
Q ss_conf 89999999977994999998999068996------3048875899975999699999689939999889970887517--
Q 001462 152 PDGRWVVSGGFDNVVKVWDLTAGKLLHDF------KFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTR-- 223 (1074)
Q Consensus 152 PdG~~LvSgs~DGsI~IWDl~tgk~i~~l------~~h~g~ItsLafSPdg~lLaTGs~DGtI~IWDl~tge~i~~l~-- 223 (1074)
.....++..+.||.+.+|+.......... ..+...+....+.+++..+... ++.+++++...........
T Consensus 173 ~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~v~~~~~~~~~~~~~~~~~ 250 (368)
T d1mdah_ 173 GAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAV--ASSILQGDIPAAGATMKAAID 250 (368)
T ss_dssp EETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECB--SSCCEEEECCSSCCEEECCCC
T ss_pred CCCCEEEEECCCCCEEEEEECCCCEEEEEEECCCCCCCCCCEEECCCCCCCEEEEEC--CCCEEEEEECCCCEEEEEECC
T ss_conf 998239999489988999826896266653031113566646601015586899934--897799960699369976024
Q ss_pred CC----------CCCEEEEEEECCCCEEEEEE-CC---------CEEEEEECCCEEEECCCCCCCEEEEEEECCCC-E-E
Q ss_conf 99----------88847999916998999997-99---------49999936872320102687614579945999-9-9
Q 001462 224 PE----------VTGVHAITFHPDGRTLFSGF-DD---------NLKVYSWEPVICHDSVDMGWSTLGDLCINDGK-L-L 281 (1074)
Q Consensus 224 ~~----------~~~ItsIafSPDG~~LasGs-d~---------~I~Iwdl~s~~~~~~i~~~~s~~~~l~spDGk-l-L 281 (1074)
.. ......+++++++..+++.. ++ .+.+|+..++.....+..+..+....+++||+ + +
T Consensus 251 ~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~a~spDG~~~ly 330 (368)
T d1mdah_ 251 GNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNY 330 (368)
T ss_dssp SSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEE
T ss_pred CCCCEEEEEEECCCCCEEEEECCCCCEEEEEECCCCCEEECCCCEEEEEECCCCCEEEEECCCCCEEEEEECCCCCEEEE
T ss_conf 65430455401278835688717998799983589733405886499998999948689558996517999989998999
Q ss_pred EEEECCCEEEEEECCCCCEEE
Q ss_conf 999879929999947993245
Q 001462 282 GCSFYRNSVGIWVADVSHVEP 302 (1074)
Q Consensus 282 atgs~DGsI~IWDld~~~l~~ 302 (1074)
+++..++.|.+||...++...
T Consensus 331 ~s~~~~~~v~v~D~~tgk~~~ 351 (368)
T d1mdah_ 331 ANSAGTEVLDIYDAASDQDQS 351 (368)
T ss_dssp EEETTTTEEEEEESSSCEEEE
T ss_pred EEECCCCEEEEEECCCCCEEE
T ss_conf 994899969999899997999
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.66 E-value=2.2e-15 Score=114.78 Aligned_cols=299 Identities=9% Similarity=0.037 Sum_probs=198.6
Q ss_pred EEEEEECCCEEEEEECCCCCEEEEEECC------------------------------CCCEEEEEECCCCCEEEEEE-C
Q ss_conf 9999978990999987999337995079------------------------------98947999938999999998-6
Q 001462 30 FLITGGDDQKVNLWAIGKPTALMSLCGL------------------------------SSPVDSVAFDSAEVLVLAGA-S 78 (1074)
Q Consensus 30 lLaTGs~DGtI~IWDi~t~k~l~sl~~h------------------------------s~~VtsIafSpdg~~LatGs-~ 78 (1074)
.+++++.+|.|.+|++..++.+..+..+ .-......++|||++|++.. .
T Consensus 13 ~f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~ 92 (441)
T d1qnia2 13 GFWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKA 92 (441)
T ss_dssp EEEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEETT
T ss_pred EEEECCCCCCEEEEECCCCCEEEEEEEECCCCCEEEEECCCCCEEEECCCCCCCCCCCCCCCCEECCCCCCCEEEEECCC
T ss_conf 99968877748999678980799997675789879998886504783133225675567772210326888889997389
Q ss_pred CCEEEEEECCCCEEEEEEE-CCCCCEEEEEECCCCC--EEEEEECCC-----------------EEEEEECCCCEEEEEE
Q ss_conf 9919999869990699980-7899838999937998--999997898-----------------0999988999079998
Q 001462 79 TGVIKLWDLEESKMVRTLT-GHKSNCTAVEFHPFGE--FFASGCMDT-----------------NLKIWDIRKKGCIHTY 138 (1074)
Q Consensus 79 DG~I~IWDl~sgk~i~tl~-~h~~~VtsIafSPdg~--~LaSgs~DG-----------------sI~IWDi~sg~~i~~l 138 (1074)
+..|.+||+.+++....+. ........++|+|+++ |++..+.+. .+..+|..+......+
T Consensus 93 ~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI 172 (441)
T d1qnia2 93 NTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQV 172 (441)
T ss_dssp TTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEEE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEEE
T ss_conf 99799998877847557956788786434870569989999566775443676630014555323886637556064787
Q ss_pred ECCCCCEEEEEECCCCCEEEEEECCC-EEEEEECCCCCEEEEEEECCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCC
Q ss_conf 17998748999968999999997799-49999989990689963048875899975999699999689939999889970
Q 001462 139 KGHTRGINTIRFTPDGRWVVSGGFDN-VVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFE 217 (1074)
Q Consensus 139 k~h~~~VssIafSPdG~~LvSgs~DG-sI~IWDl~tgk~i~~l~~h~g~ItsLafSPdg~lLaTGs~DGtI~IWDl~tge 217 (1074)
... .....+.|+|+|+++++.+.+. .+..++..+......+.... ....+.+.|+|+++..+ .++.+.+++.....
T Consensus 173 ~v~-~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n-~p~~~~~~~dGk~~~v~-~~~v~vvd~~~~~~ 249 (441)
T d1qnia2 173 IVD-GNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFN-VERIAAAVKAGNFKTIG-DSKVPVVDGRGESE 249 (441)
T ss_dssp EES-SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEE-HHHHHHHHHTTCCBCCT-TCCCCEEECSSSCS
T ss_pred ECC-CCCCCEEECCCCCEEEEEECCCCCEEEEECCCCCEEEEEEECC-CCCEEEEECCCCEEEEC-CCCCEEEECCCCCC
T ss_conf 369-9865469879999899985178731898515712178999688-51107996699999969-99828998036870
Q ss_pred EEEEECCCCCCEEEEEEECCCCEEEEE--ECCCEEEEEECCCEE------------EECCCCCCCEEEEEEECCCCEEEE
Q ss_conf 887517998884799991699899999--799499999368723------------201026876145799459999999
Q 001462 218 LIGSTRPEVTGVHAITFHPDGRTLFSG--FDDNLKVYSWEPVIC------------HDSVDMGWSTLGDLCINDGKLLGC 283 (1074)
Q Consensus 218 ~i~~l~~~~~~ItsIafSPDG~~LasG--sd~~I~Iwdl~s~~~------------~~~i~~~~s~~~~l~spDGklLat 283 (1074)
.+..+.... ....+.++|||++++++ .++.+.+|+++.... ......+..++...|.++|..+.+
T Consensus 250 v~~~IPvgk-sPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~~g~~yts 328 (441)
T d1qnia2 250 FTRYIPVPK-NPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRGNAYTT 328 (441)
T ss_dssp SEEEECCBS-SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEECSSSEEEEE
T ss_pred EEEEEECCC-CCCCCEECCCCCEEEEECCCCCCEEEEEEEHHHHHHHCCCCCCEEEEEECCCCCCCCCCEECCCCEEEEC
T ss_conf 689971798-8667268999878999077599389998322445752568842479960145547665226578559985
Q ss_pred EECCCEEEEEECCC-------C----CEEEEECCCCCCCCCCEEEEEECCCCCCCEEEEEEEECC
Q ss_conf 98799299999479-------9----324531278999998631999969999210499989614
Q 001462 284 SFYRNSVGIWVADV-------S----HVEPYGVGAPEPDQSICTEVKFNPPGSHSLEKVGIIGRS 337 (1074)
Q Consensus 284 gs~DGsI~IWDld~-------~----~l~~~~l~~~~~~~~~ItsVaFSPDGs~~La~vlavG~s 337 (1074)
.+.|..|..|+++. . ....+.+.-..+|...+.+..|+|||+ .++.+.-
T Consensus 329 ~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk-----~l~s~~k 388 (441)
T d1qnia2 329 LFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGK-----WLVVLSK 388 (441)
T ss_dssp ETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCCC-----EEEEEES
T ss_pred CCCCCEEEEECCCHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCC-----EEEECCC
T ss_conf 24431689723542213322677765686453266898775245422389884-----8996574
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.63 E-value=9.7e-14 Score=103.80 Aligned_cols=284 Identities=7% Similarity=-0.140 Sum_probs=174.3
Q ss_pred CCCEEEEEECCCCCEEEEE---ECC--CEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEE----------CCC
Q ss_conf 9894799993899999999---869--9199998699906999807899838999937998999997----------898
Q 001462 58 SSPVDSVAFDSAEVLVLAG---AST--GVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGC----------MDT 122 (1074)
Q Consensus 58 s~~VtsIafSpdg~~LatG---s~D--G~I~IWDl~sgk~i~tl~~h~~~VtsIafSPdg~~LaSgs----------~DG 122 (1074)
..+...++..++++..... ..+ ..+.+||..+++.+..+..+... .+.|+|+++++++.+ .|+
T Consensus 19 ~g~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d~ 96 (368)
T d1mdah_ 19 DGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTD 96 (368)
T ss_dssp CCCCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEE
T ss_pred CCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEECCCCCEEEEEECCCCC--CCEECCCCCEEEEECCCCCCCCCCCCCC
T ss_conf 79866645589876126972045788621799708998377888578777--5139899988999755676401035678
Q ss_pred EEEEEECCCCEEEEEEECCCC-------CEEEEEECCCCCEEEEEE-CCCEEEEEECCCCCEEEEEEECCCCEEEEEECC
Q ss_conf 099998899907999817998-------748999968999999997-799499999899906899630488758999759
Q 001462 123 NLKIWDIRKKGCIHTYKGHTR-------GINTIRFTPDGRWVVSGG-FDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHP 194 (1074)
Q Consensus 123 sI~IWDi~sg~~i~~lk~h~~-------~VssIafSPdG~~LvSgs-~DGsI~IWDl~tgk~i~~l~~h~g~ItsLafSP 194 (1074)
.|.+||..+++.+..+..+.. ....++|+|||++++++. .++.+.+||+.+++....+..+...... ..
T Consensus 97 ~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~---~~ 173 (368)
T d1mdah_ 97 YVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIH---PG 173 (368)
T ss_dssp EEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCCE---EE
T ss_pred EEEEEECCCCCEEEEECCCCCCEECCCCCCCCEEECCCCCEEEEEECCCCEEEEEECCCCCEEEEEECCCCCEEC---CC
T ss_conf 699998999938306437854210246886405887899899999689985999989989386786046752374---69
Q ss_pred CCCEEEEEECCCEEEEEECCCCCEEEE------ECCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCEEEECC-----
Q ss_conf 996999996899399998899708875------179988847999916998999997994999993687232010-----
Q 001462 195 LEFLLATGSADRTVKFWDLETFELIGS------TRPEVTGVHAITFHPDGRTLFSGFDDNLKVYSWEPVICHDSV----- 263 (1074)
Q Consensus 195 dg~lLaTGs~DGtI~IWDl~tge~i~~------l~~~~~~ItsIafSPDG~~LasGsd~~I~Iwdl~s~~~~~~i----- 263 (1074)
....++..+.||.+.+|++........ +..+...+....+.+++..+.. ..+.++++++.........
T Consensus 174 ~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~ 252 (368)
T d1mdah_ 174 AAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWA-VASSILQGDIPAAGATMKAAIDGN 252 (368)
T ss_dssp ETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEEC-BSSCCEEEECCSSCCEEECCCCSS
T ss_pred CCCEEEEECCCCCEEEEEECCCCEEEEEEECCCCCCCCCCEEECCCCCCCEEEEE-CCCCEEEEEECCCCEEEEEECCCC
T ss_conf 9823999948998899982689626665303111356664660101558689993-489779996069936997602465
Q ss_pred -----CCCC---CEEEEEEECCCCEEEEEECC---------CEEEEEECCCCCEEEEECCCCCCCCCCEEEEEECCCCCC
Q ss_conf -----2687---61457994599999999879---------929999947993245312789999986319999699992
Q 001462 264 -----DMGW---STLGDLCINDGKLLGCSFYR---------NSVGIWVADVSHVEPYGVGAPEPDQSICTEVKFNPPGSH 326 (1074)
Q Consensus 264 -----~~~~---s~~~~l~spDGklLatgs~D---------GsI~IWDld~~~l~~~~l~~~~~~~~~ItsVaFSPDGs~ 326 (1074)
...+ ......+.+++..++....+ ..|.+||...+...... .....+..++|+|||+.
T Consensus 253 ~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~-----~~~~~~~~~a~spDG~~ 327 (368)
T d1mdah_ 253 ESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPI-----SNGHDSDAIIAAQDGAS 327 (368)
T ss_dssp CTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECC-----EEEEEECEEEECCSSSC
T ss_pred CCEEEEEEECCCCCEEEEECCCCCEEEEEECCCCCEEECCCCEEEEEECCCCCEEEEE-----CCCCCEEEEEECCCCCE
T ss_conf 4304554012788356887179987999835897334058864999989999486895-----58996517999989998
Q ss_pred CEEEEEEEECCCCCEEEEECCCCCCCEEEEE
Q ss_conf 1049998961476068963577643069986
Q 001462 327 SLEKVGIIGRSTSGFRSTSPDYETKDIKTIY 357 (1074)
Q Consensus 327 ~La~vlavG~stG~lr~ivpD~et~eIv~i~ 357 (1074)
.+ .+.+...+ .+.+.|..+++.....
T Consensus 328 ~l---y~s~~~~~--~v~v~D~~tgk~~~~i 353 (368)
T d1mdah_ 328 DN---YANSAGTE--VLDIYDAASDQDQSSV 353 (368)
T ss_dssp EE---EEEETTTT--EEEEEESSSCEEEEEC
T ss_pred EE---EEEECCCC--EEEEEECCCCCEEEEE
T ss_conf 99---99948999--6999989999799998
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.57 E-value=1.1e-11 Score=90.04 Aligned_cols=140 Identities=14% Similarity=0.075 Sum_probs=95.2
Q ss_pred EEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEEECC-----CCCEEEEEECCCCCEEEEEEC---------CCEEEEE
Q ss_conf 79999389999999986991999986999069998078-----998389999379989999978---------9809999
Q 001462 62 DSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGH-----KSNCTAVEFHPFGEFFASGCM---------DTNLKIW 127 (1074)
Q Consensus 62 tsIafSpdg~~LatGs~DG~I~IWDl~sgk~i~tl~~h-----~~~VtsIafSPdg~~LaSgs~---------DGsI~IW 127 (1074)
..+.|.+++.++.. .++.+.+||+.+++....+..+ ...|.++.|+||+++|+.++. ++.+++|
T Consensus 20 ~~~~W~~d~~~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~ 97 (470)
T d2bgra1 20 YSLRWISDHEYLYK--QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIY 97 (470)
T ss_dssp CCCEECSSSEEEEE--SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEE
T ss_pred CCCEECCCCEEEEE--CCCCEEEEECCCCCEEEEECHHHHHHCCCCCCEEEECCCCCEEEEEECCCCEEEECCCCEEEEE
T ss_conf 57896899979997--5994999988999789997015644316765405998988979999777100010467349999
Q ss_pred ECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEEC------------------CCCEEE
Q ss_conf 88999079998179987489999689999999977994999998999068996304------------------887589
Q 001462 128 DIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFH------------------EGHIRS 189 (1074)
Q Consensus 128 Di~sg~~i~~lk~h~~~VssIafSPdG~~LvSgs~DGsI~IWDl~tgk~i~~l~~h------------------~g~Its 189 (1074)
|+.+++ +..+..+...+....|+|||++++... ++.+++|+...++.......+ .+....
T Consensus 98 d~~~~~-~~~l~~~~~~~~~~~~SPDG~~ia~~~-~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~ 175 (470)
T d2bgra1 98 DLNKRQ-LITEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSA 175 (470)
T ss_dssp ETTTTE-ECCSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBC
T ss_pred ECCCCC-CCCCCCCCCCCCCCCCCCCCCEEEEEE-CCCCEEEECCCCCEEEEEECCCCCCCCCCCCCEEEEEEECCCCCC
T ss_conf 898885-131246874231010146764135751-464137988999465321014777405354320112100477653
Q ss_pred EEECCCCCEEEEEECC
Q ss_conf 9975999699999689
Q 001462 190 IDFHPLEFLLATGSAD 205 (1074)
Q Consensus 190 LafSPdg~lLaTGs~D 205 (1074)
+.|+|||+.|+....|
T Consensus 176 ~~wSPDGk~ia~~~~d 191 (470)
T d2bgra1 176 LWWSPNGTFLAYAQFN 191 (470)
T ss_dssp EEECTTSSEEEEEEEE
T ss_pred CEECCCCCCCCEEEEC
T ss_conf 0799998722026863
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=99.52 E-value=1.2e-09 Score=76.53 Aligned_cols=289 Identities=11% Similarity=0.060 Sum_probs=163.1
Q ss_pred EEEEEEC--CCEEEEEEC--CCCCEE--EEE-ECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCC-CEEEEEE-ECCC
Q ss_conf 9999978--990999987--999337--995-07998947999938999999998699199998699-9069998-0789
Q 001462 30 FLITGGD--DQKVNLWAI--GKPTAL--MSL-CGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEE-SKMVRTL-TGHK 100 (1074)
Q Consensus 30 lLaTGs~--DGtI~IWDi--~t~k~l--~sl-~~hs~~VtsIafSpdg~~LatGs~DG~I~IWDl~s-gk~i~tl-~~h~ 100 (1074)
.|++|.. .+.|+.+.+ +++... ... ......+..++|+++++.|++... +.+..|.+.. +...... ....
T Consensus 4 ~l~vGtyt~~~~i~~~~fd~~~~~l~~~~~~~~~~~~~~s~la~s~d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~~~ 82 (365)
T d1jofa_ 4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAM-KKWSSFAVKSPTEIVHEASHPIG 82 (365)
T ss_dssp EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEB-TEEEEEEEEETTEEEEEEEEECC
T ss_pred EEEEEEECCCCCEEEEEECCCCCEEEEEEEEECCCCCCCCEEEECCCCCEEEEEEC-CCEEEEEEECCCCEEEEEEECCC
T ss_conf 99999314999899999858889389845445168999777999489899999938-94789999089976987641289
Q ss_pred CCEEEEEECCCCCEEEEEE---CCCEEEEEECCCC-EE---------------EEEE-ECCCCCEEEEEECCCCCEEEEE
Q ss_conf 9838999937998999997---8980999988999-07---------------9998-1799874899996899999999
Q 001462 101 SNCTAVEFHPFGEFFASGC---MDTNLKIWDIRKK-GC---------------IHTY-KGHTRGINTIRFTPDGRWVVSG 160 (1074)
Q Consensus 101 ~~VtsIafSPdg~~LaSgs---~DGsI~IWDi~sg-~~---------------i~~l-k~h~~~VssIafSPdG~~LvSg 160 (1074)
.....+.++++++.+++.. ..+.+..+.+... .. .... ......+.++.|+|+|++++++
T Consensus 83 ~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~ 162 (365)
T d1jofa_ 83 GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSA 162 (365)
T ss_dssp SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEE
T ss_pred CCCEEEEECCCCCEEEEEEECCCCCEEEEEECCCCCCCCEEEEEEECCEECCCCCCCCCCCCCCCEEEEECCCCCEEEEE
T ss_conf 98678998789987999993279978998674578874206866403300476467556889811597888999989982
Q ss_pred EC-CCEEEEEECCCC-CEE--EEEE--ECCCCEEEEEECCCCCEEEEEE-CCCEEEEEECCCCCEE--EE---E--C---
Q ss_conf 77-994999998999-068--9963--0488758999759996999996-8993999988997088--75---1--7---
Q 001462 161 GF-DNVVKVWDLTAG-KLL--HDFK--FHEGHIRSIDFHPLEFLLATGS-ADRTVKFWDLETFELI--GS---T--R--- 223 (1074)
Q Consensus 161 s~-DGsI~IWDl~tg-k~i--~~l~--~h~g~ItsLafSPdg~lLaTGs-~DGtI~IWDl~tge~i--~~---l--~--- 223 (1074)
+. ...|.+|+.... ... .... ........+.|+|+++++++.. .++.|.+|++...... .. . .
T Consensus 163 d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~ 242 (365)
T d1jofa_ 163 DLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPG 242 (365)
T ss_dssp ETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTT
T ss_pred ECCCCEEEEEECCCCCCEEECCCEEECCCCCCEEEEEECCCCCEEEEECCCCCEEEEEEECCCCCEEEEEEEEECCCCCC
T ss_conf 07998799997068871665251111278874089998899866999515899899999559875377873124024556
Q ss_pred ---------CCCCCEEEEEEECCCCEEEEEE--CCC-----EEEEEECCCEEEE-------CCCCCCCEEEEEEEC-CCC
Q ss_conf ---------9988847999916998999997--994-----9999936872320-------102687614579945-999
Q 001462 224 ---------PEVTGVHAITFHPDGRTLFSGF--DDN-----LKVYSWEPVICHD-------SVDMGWSTLGDLCIN-DGK 279 (1074)
Q Consensus 224 ---------~~~~~ItsIafSPDG~~LasGs--d~~-----I~Iwdl~s~~~~~-------~i~~~~s~~~~l~sp-DGk 279 (1074)
........+.++|+|++|+++. ++. +..|......... ....+..+....+.+ +|+
T Consensus 243 ~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~ 322 (365)
T d1jofa_ 243 IPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDE 322 (365)
T ss_dssp CCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTT
T ss_pred CCCCCCCCCCCCCCCCCEEECCCCCEEEEECCCCCCCCCEEEEEEEECCCCCEEEEEEEEEEECCCCCCCEEEECCCCCC
T ss_conf 55666544443577631699899997899713578754227999985688714467676677767998647896489999
Q ss_pred EEEEEE-CCCEEEEEECCCCCEEEEECCCCCCCCCCEEEEEE
Q ss_conf 999998-79929999947993245312789999986319999
Q 001462 280 LLGCSF-YRNSVGIWVADVSHVEPYGVGAPEPDQSICTEVKF 320 (1074)
Q Consensus 280 lLatgs-~DGsI~IWDld~~~l~~~~l~~~~~~~~~ItsVaF 320 (1074)
+|+++. .++.|.+|+++...+....... .+......++.|
T Consensus 323 ~l~va~~~s~~v~v~~~~~~~l~~~~~~~-vp~p~~~~~~~w 363 (365)
T d1jofa_ 323 WMAITDDQEGWLEIYRWKDEFLHRVARVR-IPEPGFGMNAIW 363 (365)
T ss_dssp EEEEECSSSCEEEEEEEETTEEEEEEEEE-CCSTTEEEEEEE
T ss_pred EEEEEECCCCEEEEEEEECCCCCEEEEEE-CCCCCCCEEEEE
T ss_conf 99999679994999998288672789998-899999768796
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.49 E-value=2.6e-10 Score=80.90 Aligned_cols=302 Identities=13% Similarity=0.081 Sum_probs=163.2
Q ss_pred EEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECC---CCCEEEEEECCCCCEEEEEEC---------CCEEEEEECC
Q ss_conf 9991289939999978990999987999337995079---989479999389999999986---------9919999869
Q 001462 21 ISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGL---SSPVDSVAFDSAEVLVLAGAS---------TGVIKLWDLE 88 (1074)
Q Consensus 21 IafSPdg~~lLaTGs~DGtI~IWDi~t~k~l~sl~~h---s~~VtsIafSpdg~~LatGs~---------DG~I~IWDl~ 88 (1074)
..|.+++ .++. -..+|.+.+|+..+++....+... ...+....|+||+++++.... .+.+.++|+.
T Consensus 22 ~~W~~~~-~~~~-~~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~ 99 (465)
T d1xfda1 22 AKWISDT-EFIY-REQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIP 99 (465)
T ss_dssp CCBSSSS-CBCC-CCSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESS
T ss_pred CEEECCC-CEEE-EECCCCEEEEECCCCCEEEEECCCCCCCCCCCEEEECCCCCEEEEEECCCCEEEEECCCCEEEEECC
T ss_conf 7891798-4899-9289969999878998899872764444553213898988869999845100476033528999856
Q ss_pred CCEEEEEEEC--CCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEEECCC-C-----------------CEEEE
Q ss_conf 9906999807--89983899993799899999789809999889990799981799-8-----------------74899
Q 001462 89 ESKMVRTLTG--HKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHT-R-----------------GINTI 148 (1074)
Q Consensus 89 sgk~i~tl~~--h~~~VtsIafSPdg~~LaSgs~DGsI~IWDi~sg~~i~~lk~h~-~-----------------~VssI 148 (1074)
++........ ....+....|+|+|+.++... ++.|++.+...+..++...... . .-..+
T Consensus 100 ~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~ 178 (465)
T d1xfda1 100 HGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAH 178 (465)
T ss_dssp SCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEE
T ss_pred CCCEEECCCCCCCCCCCCEEEECCCCCEEEEEE-CCEEEEEECCCCCEEEEECCCCCCEEECCCCCHHHHHHHCCCCCEE
T ss_conf 884564157667764311002426785699996-1329999548996589711267660443664310012303664348
Q ss_pred EECCCCCEEEEEECC-C---------------------------------EEEEEECCCCCEEEEEE------ECCCCEE
Q ss_conf 996899999999779-9---------------------------------49999989990689963------0488758
Q 001462 149 RFTPDGRWVVSGGFD-N---------------------------------VVKVWDLTAGKLLHDFK------FHEGHIR 188 (1074)
Q Consensus 149 afSPdG~~LvSgs~D-G---------------------------------sI~IWDl~tgk~i~~l~------~h~g~It 188 (1074)
.|+|||++|+....| . .+.++|+..+....... .....+.
T Consensus 179 ~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~ 258 (465)
T d1xfda1 179 WWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYIT 258 (465)
T ss_dssp EECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEE
T ss_pred EECCCCCEEEEEEECCCCCCEEECCCCCCCCCCEEEEEECCCCCCCCCCEEEEEEECCCCCEEEEEECCCCCCCCCCEEE
T ss_conf 97798986899995366661464123445444313345302568889721379983689817899952576766663045
Q ss_pred EEEECCCCCEEEEEEC-C---CEEEEEECCCCCEEEEECCC-CCC----EEEEEEECCCCEEEE--EE--C--CCEEEEE
Q ss_conf 9997599969999968-9---93999988997088751799-888----479999169989999--97--9--9499999
Q 001462 189 SIDFHPLEFLLATGSA-D---RTVKFWDLETFELIGSTRPE-VTG----VHAITFHPDGRTLFS--GF--D--DNLKVYS 253 (1074)
Q Consensus 189 sLafSPdg~lLaTGs~-D---GtI~IWDl~tge~i~~l~~~-~~~----ItsIafSPDG~~Las--Gs--d--~~I~Iwd 253 (1074)
.+.|.+++.+++.... + ..|.++|..++++...+... .+. -....|+++|..++. .. + +.++.+.
T Consensus 259 ~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~dg~~~~fi~~se~~g~~~ly~~~ 338 (465)
T d1xfda1 259 MVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHIT 338 (465)
T ss_dssp EEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEE
T ss_pred EEEECCCCEEEEEEECCCCCCCEEEEECCCCCCEEEEEEECCCCEEECCCCCEEECCCCCEEEEEEEEEECCCCCEEEEE
T ss_conf 66875799389999741003013799707999278778972785173567860574689805777765431667168998
Q ss_pred EC-------CCEEEECCCCCCCEEEEEEE-CCCCEEE-EEECC--CEEEEEECCC--CCEEEEECCCCCCCCCCEEEEEE
Q ss_conf 36-------87232010268761457994-5999999-99879--9299999479--93245312789999986319999
Q 001462 254 WE-------PVICHDSVDMGWSTLGDLCI-NDGKLLG-CSFYR--NSVGIWVADV--SHVEPYGVGAPEPDQSICTEVKF 320 (1074)
Q Consensus 254 l~-------s~~~~~~i~~~~s~~~~l~s-pDGklLa-tgs~D--GsI~IWDld~--~~l~~~~l~~~~~~~~~ItsVaF 320 (1074)
+. ...........|.+...+.+ .+++.+. ++..+ +.-++|.++. +......... ....+...++.|
T Consensus 339 ~~~~~~~~~~~~~~~LT~G~w~V~~i~~~d~~~~~vyF~a~~~~p~~~hly~v~l~g~~~~~~lt~~-~~~~~~~~~~~~ 417 (465)
T d1xfda1 339 VSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCD-LVENCTYFSASF 417 (465)
T ss_dssp EECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTT-SSSSCCCCEEEE
T ss_pred ECCCCCCCCCCEEEEECCCCCEEEEEEEECCCCCEEEEEEECCCCCCEEEEEEECCCCCCCEEECCC-CCCCCCEEEEEE
T ss_conf 3156666788626982269921997789838999999999689998268999977899860553144-678898799999
Q ss_pred CCCCCC
Q ss_conf 699992
Q 001462 321 NPPGSH 326 (1074)
Q Consensus 321 SPDGs~ 326 (1074)
||||+.
T Consensus 418 S~~~~y 423 (465)
T d1xfda1 418 SHSMDF 423 (465)
T ss_dssp CTTSSE
T ss_pred CCCCCE
T ss_conf 999999
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.47 E-value=8.8e-11 Score=84.05 Aligned_cols=246 Identities=10% Similarity=0.002 Sum_probs=141.4
Q ss_pred EEECCC--CCEEEEEEECCCCCEEEE-EECCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEE
Q ss_conf 984479--987999991289939999-97899099998799933799507998947999938999999998699199998
Q 001462 10 EFVAHS--ANVNCISIGKKACRFLIT-GGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWD 86 (1074)
Q Consensus 10 ~L~gHs--s~VtsIafSPdg~~lLaT-Gs~DGtI~IWDi~t~k~l~sl~~hs~~VtsIafSpdg~~LatGs~DG~I~IWD 86 (1074)
-+.++. -.-..+++.++| .++++ .+..+.+..++...................+++++++.++++....+.+.+++
T Consensus 6 ~~~~~~~~~~P~~vavd~dG-~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~~g~i~v~d~~~~~i~~~~ 84 (260)
T d1rwia_ 6 PFTGIDFRLSPSGVAVDSAG-NVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAA 84 (260)
T ss_dssp CCCSCCSCCCEEEEEECTTC-CEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECT
T ss_pred ECCCCCCCCCCCEEEECCCC-CEEEEECCCCCEEEEECCCCCEEEEECCCCCCCCEEEEECCCCCEEEEEEEECEEEEEE
T ss_conf 31557776987889996999-99999718998899993899668974369866840899938998898631000035542
Q ss_pred CCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCEE
Q ss_conf 69990699980789983899993799899999789809999889990799981799874899996899999999779949
Q 001462 87 LEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVV 166 (1074)
Q Consensus 87 l~sgk~i~tl~~h~~~VtsIafSPdg~~LaSgs~DGsI~IWDi~sg~~i~~lk~h~~~VssIafSPdG~~LvSgs~DGsI 166 (1074)
-.......... .......+++.++++++++-.....+..++...................+++.++++++++...++.|
T Consensus 85 ~~~~~~~~~~~-~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~~~v~~~~~~~i 163 (260)
T d1rwia_ 85 GSNNQTVLPFD-GLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRV 163 (260)
T ss_dssp TCSCCEECCCC-SCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECTTCCEEEEEGGGTEE
T ss_pred ECCCEEEEEEE-EEEECCCCCCCCCCEEEEECCCCCCCCCCCCCCCEEEEEEECCCCCCCEEEECCCCCEEEECCCCCCC
T ss_conf 11200000010-00000000245532057503355532112322220122320366775205454899886410256433
Q ss_pred EEEECCCCCEEEEEEECCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEEECCCCEEEEEEC
Q ss_conf 99998999068996304887589997599969999968993999988997088751799888479999169989999979
Q 001462 167 KVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGFD 246 (1074)
Q Consensus 167 ~IWDl~tgk~i~~l~~h~g~ItsLafSPdg~lLaTGs~DGtI~IWDl~tge~i~~l~~~~~~ItsIafSPDG~~LasGsd 246 (1074)
..++...................+++.+++.++++....+.|..++...................|+++++|.++++-..
T Consensus 164 ~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~~~~~~~~~~~P~~i~~d~~g~l~vad~~ 243 (260)
T d1rwia_ 164 VKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRG 243 (260)
T ss_dssp EEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSCCEECCCCSCCCEEEEEECTTCCEEEEEGG
T ss_pred CCCCCCCCEEEEEECCCCCCCCCCEEEEEEEEEEEECCCCEEEEEECCCCEEEEECCCCCCCEEEEEEECCCCEEEEECC
T ss_conf 22234310012221011478763123100013432148998999969997699970699898179999089999999799
Q ss_pred CCEEEEEECCCE
Q ss_conf 949999936872
Q 001462 247 DNLKVYSWEPVI 258 (1074)
Q Consensus 247 ~~I~Iwdl~s~~ 258 (1074)
+. +|+.+.+..
T Consensus 244 ~~-rI~~i~~~~ 254 (260)
T d1rwia_ 244 ND-RVVKLTSLE 254 (260)
T ss_dssp GT-EEEEECCCG
T ss_pred CC-EEEEEECCC
T ss_conf 99-899995999
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.45 E-value=1.7e-12 Score=95.49 Aligned_cols=195 Identities=9% Similarity=0.041 Sum_probs=77.8
Q ss_pred CCEEEEEEECCCCCEEEE-EECCCEEEEEECCCCCEEEEEE-CCCCCEEEEEECCCCC--EEEEEECCC-----------
Q ss_conf 987999991289939999-9789909999879993379950-7998947999938999--999998699-----------
Q 001462 16 ANVNCISIGKKACRFLIT-GGDDQKVNLWAIGKPTALMSLC-GLSSPVDSVAFDSAEV--LVLAGASTG----------- 80 (1074)
Q Consensus 16 s~VtsIafSPdg~~lLaT-Gs~DGtI~IWDi~t~k~l~sl~-~hs~~VtsIafSpdg~--~LatGs~DG----------- 80 (1074)
-...+..+.||| ++|++ ...+..|.+||+.+++....+. .+...+..+.|+|+++ +++..+.+.
T Consensus 72 P~~s~t~gtpDG-r~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~ 150 (441)
T d1qnia2 72 PHISMTDGRYDG-KYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFS 150 (441)
T ss_dssp CEEEEETTEEEE-EEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCC
T ss_pred CCCCEECCCCCC-CEEEEECCCCCEEEEEECCCCCEEEEEECCCCCCCCCEEEECCCCEEEEEECCCCCCCCCCCCCCCC
T ss_conf 772210326888-8899973899979999887784755795678878643487056998999956677544367663001
Q ss_pred ------EEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCC-EEEEEECCCCEEEEEEECCCCCEEEEEECCC
Q ss_conf ------199998699906999807899838999937998999997898-0999988999079998179987489999689
Q 001462 81 ------VIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDT-NLKIWDIRKKGCIHTYKGHTRGINTIRFTPD 153 (1074)
Q Consensus 81 ------~I~IWDl~sgk~i~tl~~h~~~VtsIafSPdg~~LaSgs~DG-sI~IWDi~sg~~i~~lk~h~~~VssIafSPd 153 (1074)
.+..+|..+.+....+... .....+.|+|+|+++++++.+. .+..++..+......+... .....+.+.++
T Consensus 151 ~~~~~~~~~~iD~~t~~v~~qI~v~-~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~-n~p~~~~~~~d 228 (441)
T d1qnia2 151 LDNSYTMFTAIDAETMDVAWQVIVD-GNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVF-NVERIAAAVKA 228 (441)
T ss_dssp GGGEEEEEEEEETTTCSEEEEEEES-SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEE-EHHHHHHHHHT
T ss_pred CCCCCCEEEEECCCCCEEEEEEECC-CCCCCEEECCCCCEEEEEECCCCCEEEEECCCCCEEEEEEEC-CCCCEEEEECC
T ss_conf 4555323886637556064787369-986546987999989998517873189851571217899968-85110799669
Q ss_pred CCEEEEEECCCEEEEEECCCCCEEEEEEECCCCEEEEEECCCCCEEEE-EECCCEEEEEECCC
Q ss_conf 999999977994999998999068996304887589997599969999-96899399998899
Q 001462 154 GRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLAT-GSADRTVKFWDLET 215 (1074)
Q Consensus 154 G~~LvSgs~DGsI~IWDl~tgk~i~~l~~h~g~ItsLafSPdg~lLaT-Gs~DGtI~IWDl~t 215 (1074)
|+++..+ .++.+.+++....+.+..+..... ...+.++|||+++++ +..++++.+||+.+
T Consensus 229 Gk~~~v~-~~~v~vvd~~~~~~v~~~IPvgks-PhGv~vSPDGkyl~~~~~~~~tvsv~d~~k 289 (441)
T d1qnia2 229 GNFKTIG-DSKVPVVDGRGESEFTRYIPVPKN-PHGLNTSPDGKYFIANGKLSPTVSVIAIDK 289 (441)
T ss_dssp TCCBCCT-TCCCCEEECSSSCSSEEEECCBSS-CCCEEECTTSCEEEEECTTSSBEEEEEGGG
T ss_pred CCEEEEC-CCCCEEEECCCCCCEEEEEECCCC-CCCCEECCCCCEEEEECCCCCCEEEEEEEH
T ss_conf 9999969-998289980368706899717988-667268999878999077599389998322
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=99.40 E-value=4.6e-09 Score=72.56 Aligned_cols=113 Identities=12% Similarity=0.097 Sum_probs=43.4
Q ss_pred CEEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCC--EEEE
Q ss_conf 87999991289939999978990999987999337995079989479999389999999986991999986999--0699
Q 001462 17 NVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEES--KMVR 94 (1074)
Q Consensus 17 ~VtsIafSPdg~~lLaTGs~DGtI~IWDi~t~k~l~sl~~hs~~VtsIafSpdg~~LatGs~DG~I~IWDl~sg--k~i~ 94 (1074)
.+..++++||| +++++...++.|..|+... . ...+......+.+++|.++|+++++...++.+..|+.... ....
T Consensus 29 ~~e~iAv~pdG-~l~vt~~~~~~I~~i~p~g-~-~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~ 105 (302)
T d2p4oa1 29 FLENLASAPDG-TIFVTNHEVGEIVSITPDG-N-QQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVET 105 (302)
T ss_dssp CEEEEEECTTS-CEEEEETTTTEEEEECTTC-C-EEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEE
T ss_pred CCCCEEECCCC-CEEEEECCCCEEEEEECCC-C-EEEEECCCCCCCEEEECCCCCEEEEECCCCEEEEEEECCCCCCEEE
T ss_conf 84787799998-8999968899899990899-8-8999717998536898677886998328953788871011110121
Q ss_pred EE-ECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCC
Q ss_conf 98-078998389999379989999978980999988999
Q 001462 95 TL-TGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKK 132 (1074)
Q Consensus 95 tl-~~h~~~VtsIafSPdg~~LaSgs~DGsI~IWDi~sg 132 (1074)
.. .........+.+.++++++++.+.++.++.++...+
T Consensus 106 ~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~ 144 (302)
T d2p4oa1 106 LLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQP 144 (302)
T ss_dssp EEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTT
T ss_pred CCCCCCCCCCCEEEECCCCCEEEECCCCCCCEEEECCCC
T ss_conf 023578632216677157978750356554102421687
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=99.36 E-value=1.1e-08 Score=69.94 Aligned_cols=274 Identities=12% Similarity=0.052 Sum_probs=131.4
Q ss_pred EEEEEEC--CCEEEEE--ECCCCEEE--EEE-ECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCC-EEEEEE-ECCC
Q ss_conf 9999986--9919999--86999069--998-078998389999379989999978980999988999-079998-1799
Q 001462 72 LVLAGAS--TGVIKLW--DLEESKMV--RTL-TGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKK-GCIHTY-KGHT 142 (1074)
Q Consensus 72 ~LatGs~--DG~I~IW--Dl~sgk~i--~tl-~~h~~~VtsIafSPdg~~LaSgs~DGsI~IWDi~sg-~~i~~l-k~h~ 142 (1074)
.|++|+. .+.|.++ |.+++++. ... ......+..++|++++++++++.. +.+..|.+... ...... ....
T Consensus 4 ~l~vGtyt~~~~i~~~~fd~~~~~l~~~~~~~~~~~~~~s~la~s~d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~~~ 82 (365)
T d1jofa_ 4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAM-KKWSSFAVKSPTEIVHEASHPIG 82 (365)
T ss_dssp EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEB-TEEEEEEEEETTEEEEEEEEECC
T ss_pred EEEEEEECCCCCEEEEEECCCCCEEEEEEEEECCCCCCCCEEEECCCCCEEEEEEC-CCEEEEEEECCCCEEEEEEECCC
T ss_conf 99999314999899999858889389845445168999777999489899999938-94789999089976987641289
Q ss_pred CCEEEEEECCCCCEEEEEE---CCCEEEEEECCCC-------------CEEE---EEE-ECCCCEEEEEECCCCCEEEEE
Q ss_conf 8748999968999999997---7994999998999-------------0689---963-048875899975999699999
Q 001462 143 RGINTIRFTPDGRWVVSGG---FDNVVKVWDLTAG-------------KLLH---DFK-FHEGHIRSIDFHPLEFLLATG 202 (1074)
Q Consensus 143 ~~VssIafSPdG~~LvSgs---~DGsI~IWDl~tg-------------k~i~---~l~-~h~g~ItsLafSPdg~lLaTG 202 (1074)
.....+.++++++.++... ..+.+..+.+... .... ... .....++++.|+|+|++++++
T Consensus 83 ~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~ 162 (365)
T d1jofa_ 83 GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSA 162 (365)
T ss_dssp SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEE
T ss_pred CCCEEEEECCCCCEEEEEEECCCCCEEEEEECCCCCCCCEEEEEEECCEECCCCCCCCCCCCCCCEEEEECCCCCEEEEE
T ss_conf 98678998789987999993279978998674578874206866403300476467556889811597888999989982
Q ss_pred EC-CCEEEEEECCCC-CEE--EEE--CCCCCCEEEEEEECCCCEEEEEE--CCCEEEEEECCCEEEEC-----CC-----
Q ss_conf 68-993999988997-088--751--79988847999916998999997--99499999368723201-----02-----
Q 001462 203 SA-DRTVKFWDLETF-ELI--GST--RPEVTGVHAITFHPDGRTLFSGF--DDNLKVYSWEPVICHDS-----VD----- 264 (1074)
Q Consensus 203 s~-DGtI~IWDl~tg-e~i--~~l--~~~~~~ItsIafSPDG~~LasGs--d~~I~Iwdl~s~~~~~~-----i~----- 264 (1074)
.. ...|.+|+.... ... ... .......+.+.|+|+++++++.. ++.+.+|+++....... ..
T Consensus 163 d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~ 242 (365)
T d1jofa_ 163 DLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPG 242 (365)
T ss_dssp ETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTT
T ss_pred ECCCCEEEEEECCCCCCEEECCCEEECCCCCCEEEEEECCCCCEEEEECCCCCEEEEEEECCCCCEEEEEEEEECCCCCC
T ss_conf 07998799997068871665251111278874089998899866999515899899999559875377873124024556
Q ss_pred ----------CCCCEEEEEEECCCCEEEEEEC------CCEEEEEECCCCC-EE-EEECCCCCCCCCCEEEEEECC-CCC
Q ss_conf ----------6876145799459999999987------9929999947993-24-531278999998631999969-999
Q 001462 265 ----------MGWSTLGDLCINDGKLLGCSFY------RNSVGIWVADVSH-VE-PYGVGAPEPDQSICTEVKFNP-PGS 325 (1074)
Q Consensus 265 ----------~~~s~~~~l~spDGklLatgs~------DGsI~IWDld~~~-l~-~~~l~~~~~~~~~ItsVaFSP-DGs 325 (1074)
.........+.+||++|+++.. .+.|..|+++... +. ................++|+| +|+
T Consensus 243 ~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~ 322 (365)
T d1jofa_ 243 IPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDE 322 (365)
T ss_dssp CCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTT
T ss_pred CCCCCCCCCCCCCCCCCEEECCCCCEEEEECCCCCCCCCEEEEEEEECCCCCEEEEEEEEEEECCCCCCCEEEECCCCCC
T ss_conf 55666544443577631699899997899713578754227999985688714467676677767998647896489999
Q ss_pred CCEEEEEEEECCCCCEEEEECCCCC
Q ss_conf 2104999896147606896357764
Q 001462 326 HSLEKVGIIGRSTSGFRSTSPDYET 350 (1074)
Q Consensus 326 ~~La~vlavG~stG~lr~ivpD~et 350 (1074)
. +.+.+...+.+..+-.+-++
T Consensus 323 ~----l~va~~~s~~v~v~~~~~~~ 343 (365)
T d1jofa_ 323 W----MAITDDQEGWLEIYRWKDEF 343 (365)
T ss_dssp E----EEEECSSSCEEEEEEEETTE
T ss_pred E----EEEEECCCCEEEEEEEECCC
T ss_conf 9----99996799949999982886
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.35 E-value=1.7e-08 Score=68.78 Aligned_cols=233 Identities=12% Similarity=0.048 Sum_probs=106.3
Q ss_pred EEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECC---CEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEE
Q ss_conf 19999869990699980789983899993799899999789---809999889990799981799874899996899999
Q 001462 81 VIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMD---TNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWV 157 (1074)
Q Consensus 81 ~I~IWDl~sgk~i~tl~~h~~~VtsIafSPdg~~LaSgs~D---GsI~IWDi~sg~~i~~lk~h~~~VssIafSPdG~~L 157 (1074)
.|.+.|......... ..+...+...+|+|||+.|+..... ..+++.+...+.... +..+........|+|+|..+
T Consensus 20 ~l~i~d~dG~~~~~l-~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~spdg~~i 97 (269)
T d2hqsa1 20 ELRVSDYDGYNQFVV-HRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VASFPRHNGAPAFSPDGSKL 97 (269)
T ss_dssp EEEEEETTSCSCEEE-EEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEE-EECCSSCEEEEEECTTSSEE
T ss_pred EEEEECCCCCCCEEE-ECCCCCEEEEEECCCCCEEEEEEEECCCCCEEEEECCCCCEEE-EEEEECCCCCCEECCCCCEE
T ss_conf 999992899976798-6589842603887899989999815267513443113675067-76420245430244889864
Q ss_pred EEEEC-CC--EEEEEECCCCCEEEEEEECCCCEEEEEECCCCCEEEEEE-CCC--EEEEEECCCCCEEEEECCCCCCEEE
Q ss_conf 99977-99--499999899906899630488758999759996999996-899--3999988997088751799888479
Q 001462 158 VSGGF-DN--VVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGS-ADR--TVKFWDLETFELIGSTRPEVTGVHA 231 (1074)
Q Consensus 158 vSgs~-DG--sI~IWDl~tgk~i~~l~~h~g~ItsLafSPdg~lLaTGs-~DG--tI~IWDl~tge~i~~l~~~~~~Its 231 (1074)
+.... .+ .+..+............ .........+++++..++... .++ .|..+++...... ...........
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~-~~~~~~~~~~~ 175 (269)
T d2hqsa1 98 AFALSKTGSLNLYVMDLASGQIRQVTD-GRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQ-RITWEGSQNQD 175 (269)
T ss_dssp EEEECTTSSCEEEEEETTTCCEEECCC-CSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCE-ECCCSSSEEEE
T ss_pred EEEEECCCCCCEEECCCCCCCCEEEEE-CCCCCCCCCCCCCCCCCEECCCCCCCCEEEEEECCCCCCE-EEECCCCCCCC
T ss_conf 676402786410000222122000010-1442114543455443300001268743865421331000-10001222234
Q ss_pred EEEECCCCEEEEEE-CC-CEEEEEEC--CCEEEECCCCCCCEEEEEEECCCCEEEEEEC---CCEEEEEECCCCCEEEEE
Q ss_conf 99916998999997-99-49999936--8723201026876145799459999999987---992999994799324531
Q 001462 232 ITFHPDGRTLFSGF-DD-NLKVYSWE--PVICHDSVDMGWSTLGDLCINDGKLLGCSFY---RNSVGIWVADVSHVEPYG 304 (1074)
Q Consensus 232 IafSPDG~~LasGs-d~-~I~Iwdl~--s~~~~~~i~~~~s~~~~l~spDGklLatgs~---DGsI~IWDld~~~l~~~~ 304 (1074)
..|+|++..++... .+ ...+|..+ .... .............|+|||+.|+..+. ...|.+|+++.+....+.
T Consensus 176 ~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~~~lt 254 (269)
T d2hqsa1 176 ADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-QVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLP 254 (269)
T ss_dssp EEECTTSSEEEEEEECSSCEEEEEEETTTCCE-EECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEEECC
T ss_pred CCCCCCCCEEEEEEECCCCEEEEEEECCCCCC-EEEECCCCCCCEEECCCCCEEEEEECCCCCCEEEEEECCCCCEEEEE
T ss_conf 32234543057786058801256760356440-58506865445589899999999981799847999999999779985
Q ss_pred CCCCCCCCCCEEEEEECCC
Q ss_conf 2789999986319999699
Q 001462 305 VGAPEPDQSICTEVKFNPP 323 (1074)
Q Consensus 305 l~~~~~~~~~ItsVaFSPD 323 (1074)
...+.+...+|||-
T Consensus 255 -----~~~g~~~~p~WSP~ 268 (269)
T d2hqsa1 255 -----ATDGQVKFPAWSPY 268 (269)
T ss_dssp -----CSSSEEEEEEECCC
T ss_pred -----CCCCCEEEEEECCC
T ss_conf -----79985883782898
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.35 E-value=1.8e-08 Score=68.58 Aligned_cols=221 Identities=11% Similarity=0.058 Sum_probs=110.0
Q ss_pred EEEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCC---EEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEE
Q ss_conf 099998799933799507998947999938999999998699---19999869990699980789983899993799899
Q 001462 39 KVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTG---VIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFF 115 (1074)
Q Consensus 39 tI~IWDi~t~k~l~sl~~hs~~VtsIafSpdg~~LatGs~DG---~I~IWDl~sgk~i~tl~~h~~~VtsIafSPdg~~L 115 (1074)
.|.|.|..... ...+......+...+|||||+.|+...... .+.+.+...+... .+..+........|+|++..+
T Consensus 20 ~l~i~d~dG~~-~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~spdg~~i 97 (269)
T d2hqsa1 20 ELRVSDYDGYN-QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKL 97 (269)
T ss_dssp EEEEEETTSCS-CEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEE
T ss_pred EEEEECCCCCC-CEEEECCCCCEEEEEECCCCCEEEEEEEECCCCCEEEEECCCCCEE-EEEEEECCCCCCEECCCCCEE
T ss_conf 99999289997-6798658984260388789998999981526751344311367506-776420245430244889864
Q ss_pred EEEEC-CC--EEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEE-CCC--EEEEEECCCCCEEEEEEECCCCEEE
Q ss_conf 99978-98--099998899907999817998748999968999999997-799--4999998999068996304887589
Q 001462 116 ASGCM-DT--NLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGG-FDN--VVKVWDLTAGKLLHDFKFHEGHIRS 189 (1074)
Q Consensus 116 aSgs~-DG--sI~IWDi~sg~~i~~lk~h~~~VssIafSPdG~~LvSgs-~DG--sI~IWDl~tgk~i~~l~~h~g~Its 189 (1074)
+.... ++ .+..+........... ..........+++++..++... .+| .|..+++..+... ...........
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~-~~~~~~~~~~~ 175 (269)
T d2hqsa1 98 AFALSKTGSLNLYVMDLASGQIRQVT-DGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQ-RITWEGSQNQD 175 (269)
T ss_dssp EEEECTTSSCEEEEEETTTCCEEECC-CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCE-ECCCSSSEEEE
T ss_pred EEEEECCCCCCEEECCCCCCCCEEEE-ECCCCCCCCCCCCCCCCCEECCCCCCCCEEEEEECCCCCCE-EEECCCCCCCC
T ss_conf 67640278641000022212200001-01442114543455443300001268743865421331000-10001222234
Q ss_pred EEECCCCCEEEEEECCC---EEEEEECCCCCEEEEECCCCCCEEEEEEECCCCEEEEEEC-C---CEEEEEECCCEEEEC
Q ss_conf 99759996999996899---3999988997088751799888479999169989999979-9---499999368723201
Q 001462 190 IDFHPLEFLLATGSADR---TVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSGFD-D---NLKVYSWEPVICHDS 262 (1074)
Q Consensus 190 LafSPdg~lLaTGs~DG---tI~IWDl~tge~i~~l~~~~~~ItsIafSPDG~~LasGsd-~---~I~Iwdl~s~~~~~~ 262 (1074)
..|+|++..++..+.++ .+.+++...+.. .............|+|||+.|+..+. + .|++++++.......
T Consensus 176 ~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~~~l 253 (269)
T d2hqsa1 176 ADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV--QVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARL 253 (269)
T ss_dssp EEECTTSSEEEEEEECSSCEEEEEEETTTCCE--EECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEEEC
T ss_pred CCCCCCCCEEEEEEECCCCEEEEEEECCCCCC--EEEECCCCCCCEEECCCCCEEEEEECCCCCCEEEEEECCCCCEEEE
T ss_conf 32234543057786058801256760356440--5850686544558989999999998179984799999999977998
Q ss_pred CCC
Q ss_conf 026
Q 001462 263 VDM 265 (1074)
Q Consensus 263 i~~ 265 (1074)
...
T Consensus 254 t~~ 256 (269)
T d2hqsa1 254 PAT 256 (269)
T ss_dssp CCS
T ss_pred ECC
T ss_conf 579
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=99.35 E-value=1.8e-08 Score=68.57 Aligned_cols=226 Identities=13% Similarity=-0.009 Sum_probs=112.6
Q ss_pred CEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCC--EEEE
Q ss_conf 83899993799899999789809999889990799981799874899996899999999779949999989990--6899
Q 001462 102 NCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGK--LLHD 179 (1074)
Q Consensus 102 ~VtsIafSPdg~~LaSgs~DGsI~IWDi~sg~~i~~lk~h~~~VssIafSPdG~~LvSgs~DGsI~IWDl~tgk--~i~~ 179 (1074)
.+..+++.|+|+++++...++.|+.|+.. +.. ..+......+.+++|.++|+++++...++.+..|+..... ....
T Consensus 29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~-g~~-~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~ 106 (302)
T d2p4oa1 29 FLENLASAPDGTIFVTNHEVGEIVSITPD-GNQ-QIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETL 106 (302)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEECTT-CCE-EEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEE
T ss_pred CCCCEEECCCCCEEEEECCCCEEEEEECC-CCE-EEEECCCCCCCEEEECCCCCEEEEECCCCEEEEEEECCCCCCEEEC
T ss_conf 84787799998899996889989999089-988-9997179985368986778869983289537888710111101210
Q ss_pred EE-ECCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEC----------CCCCCEEEEEEECCCCEEEEEE--C
Q ss_conf 63-048875899975999699999689939999889970887517----------9988847999916998999997--9
Q 001462 180 FK-FHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTR----------PEVTGVHAITFHPDGRTLFSGF--D 246 (1074)
Q Consensus 180 l~-~h~g~ItsLafSPdg~lLaTGs~DGtI~IWDl~tge~i~~l~----------~~~~~ItsIafSPDG~~LasGs--d 246 (1074)
.. ........+.+.+++.++++...++.+..++........... ........+.++ +..++.+. .
T Consensus 107 ~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~--~~~l~~~~~~~ 184 (302)
T d2p4oa1 107 LTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRF--GNFLYVSNTEK 184 (302)
T ss_dssp EECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEE--TTEEEEEETTT
T ss_pred CCCCCCCCCCEEEECCCCCEEEECCCCCCCEEEECCCCCCEEEECCCCCCEEECCCCCCCCCCCCCC--CCCEEEECCCC
T ss_conf 2357863221667715797875035655410242168730367518864014315763224320116--98304403788
Q ss_pred CCEEEEEECCCEEEE---CCCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCCCCCEEEEEE---
Q ss_conf 949999936872320---10268761457994599999999879929999947993245312789999986319999---
Q 001462 247 DNLKVYSWEPVICHD---SVDMGWSTLGDLCINDGKLLGCSFYRNSVGIWVADVSHVEPYGVGAPEPDQSICTEVKF--- 320 (1074)
Q Consensus 247 ~~I~Iwdl~s~~~~~---~i~~~~s~~~~l~spDGklLatgs~DGsI~IWDld~~~l~~~~l~~~~~~~~~ItsVaF--- 320 (1074)
+.++.++........ .......+-...+.++|.++++...++.|..|+.+.+....... .......++++|
T Consensus 185 ~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~G~~~~~~~~---~~~~~~pt~vafg~~ 261 (302)
T d2p4oa1 185 MLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDRSTTIIAQA---EQGVIGSTAVAFGQT 261 (302)
T ss_dssp TEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTTCCEEEEECG---GGTCTTEEEEEECCS
T ss_pred CEEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCEEEEECCCCCEEEECCCCCEEEEEEC---CCCCCCCEEEEECCC
T ss_conf 76986344333323453101589987523787999999997489918998789978999963---789888248997087
Q ss_pred CCCCCCCEEEEEEEECCCC
Q ss_conf 6999921049998961476
Q 001462 321 NPPGSHSLEKVGIIGRSTS 339 (1074)
Q Consensus 321 SPDGs~~La~vlavG~stG 339 (1074)
++|++ .+.+.+..|
T Consensus 262 ~~D~~-----~Lyvtt~~g 275 (302)
T d2p4oa1 262 EGDCT-----AIYVVTNGG 275 (302)
T ss_dssp TTTTT-----EEEEEECTT
T ss_pred CCCCC-----EEEEECCCC
T ss_conf 88789-----899998898
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=99.34 E-value=1.9e-08 Score=68.41 Aligned_cols=226 Identities=11% Similarity=0.081 Sum_probs=108.8
Q ss_pred CCEEEEEEECCCCCEEEEEEC-------CCEEEEEECCCCCEEEEEEC----CCCCEEEEEECCCCCEEEEEECCCEEEE
Q ss_conf 987999991289939999978-------99099998799933799507----9989479999389999999986991999
Q 001462 16 ANVNCISIGKKACRFLITGGD-------DQKVNLWAIGKPTALMSLCG----LSSPVDSVAFDSAEVLVLAGASTGVIKL 84 (1074)
Q Consensus 16 s~VtsIafSPdg~~lLaTGs~-------DGtI~IWDi~t~k~l~sl~~----hs~~VtsIafSpdg~~LatGs~DG~I~I 84 (1074)
.....++|.++| +++++... +|.|..|+..++........ .......+.|.++++.++++...+.|..
T Consensus 18 ~g~EGpa~d~dG-~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~i~~ 96 (314)
T d1pjxa_ 18 PGAEGPVFDKNG-DFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLV 96 (314)
T ss_dssp TTCEEEEECTTS-CEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEE
T ss_pred CCCEEEEEECCC-CEEEEECCCCCCCCCCCEEEEEECCCCCEEEEECCCCCCCCCCCEEEEEECCCCEEEEEECCCEEEE
T ss_conf 897173996999-9999987540234529999999899995999977765567885306999079998999977983999
Q ss_pred EECCCCEEEEEEECCCC----CEEEEEECCCCCEEEEEEC---------------CCEEEEEECCCCEEEEEEECCCCCE
Q ss_conf 98699906999807899----8389999379989999978---------------9809999889990799981799874
Q 001462 85 WDLEESKMVRTLTGHKS----NCTAVEFHPFGEFFASGCM---------------DTNLKIWDIRKKGCIHTYKGHTRGI 145 (1074)
Q Consensus 85 WDl~sgk~i~tl~~h~~----~VtsIafSPdg~~LaSgs~---------------DGsI~IWDi~sg~~i~~lk~h~~~V 145 (1074)
++............... ....+.+.++|.++++-.. .|.|+.++.. +....... .....
T Consensus 97 ~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~d-g~~~~~~~-~~~~p 174 (314)
T d1pjxa_ 97 VQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDT-AFQFP 174 (314)
T ss_dssp EETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEE-EESSE
T ss_pred EECCCCEEEEEECCCCCCCCCCCCEEEECCCCCEEEECCCCCCCCCCCCCEECCCCCEEEEEEEC-CCEEEEEC-CCCEE
T ss_conf 94777479997334324545787278988899899914866754320110002688438999525-74037507-85322
Q ss_pred EEEEECCCCC----EE-EEEECCCEEEEEECCCCCEEEE------EEE-CCCCEEEEEECCCCCEEEEEECCCEEEEEEC
Q ss_conf 8999968999----99-9997799499999899906899------630-4887589997599969999968993999988
Q 001462 146 NTIRFTPDGR----WV-VSGGFDNVVKVWDLTAGKLLHD------FKF-HEGHIRSIDFHPLEFLLATGSADRTVKFWDL 213 (1074)
Q Consensus 146 ssIafSPdG~----~L-vSgs~DGsI~IWDl~tgk~i~~------l~~-h~g~ItsLafSPdg~lLaTGs~DGtI~IWDl 213 (1074)
..++|++++. +| ++-...+.|..|++.....+.. +.. ..+....+++..+|+++++....+.|.+||.
T Consensus 175 NGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~dp 254 (314)
T d1pjxa_ 175 NGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGP 254 (314)
T ss_dssp EEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECT
T ss_pred EEEEECCCCCCCEEEEEEEEECCCCEEEEECCCCCCCCEEEEEEECCCCCCCCCEEEEEECCCCEEEEECCCCEEEEEEC
T ss_conf 13699788776303799986024311776116765430156899713356664102578347857999827999999969
Q ss_pred CCCCEEEEECCCCCCEEEEEEECCCCEEEEE
Q ss_conf 9970887517998884799991699899999
Q 001462 214 ETFELIGSTRPEVTGVHAITFHPDGRTLFSG 244 (1074)
Q Consensus 214 ~tge~i~~l~~~~~~ItsIafSPDG~~LasG 244 (1074)
..+.....+.......++++|.++++.|++.
T Consensus 255 ~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt 285 (314)
T d1pjxa_ 255 DGGQPKMRIRCPFEKPSNLHFKPQTKTIFVT 285 (314)
T ss_dssp TCBSCSEEEECSSSCEEEEEECTTSSEEEEE
T ss_pred CCCEEEEEEECCCCCEEEEEEECCCCEEEEE
T ss_conf 9997999997999987899992898999999
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.27 E-value=1.6e-08 Score=69.05 Aligned_cols=234 Identities=9% Similarity=-0.041 Sum_probs=122.3
Q ss_pred CCEEEEEECCCCCEEEEEE-CCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEE
Q ss_conf 8947999938999999998-699199998699906999807899838999937998999997898099998899907999
Q 001462 59 SPVDSVAFDSAEVLVLAGA-STGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHT 137 (1074)
Q Consensus 59 ~~VtsIafSpdg~~LatGs-~DG~I~IWDl~sgk~i~tl~~h~~~VtsIafSPdg~~LaSgs~DGsI~IWDi~sg~~i~~ 137 (1074)
.....+++.++|+.+++.. ..+.+..++...................+++.+++..+++....+.+.+++......+..
T Consensus 14 ~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~~~ 93 (260)
T d1rwia_ 14 LSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLP 93 (260)
T ss_dssp CCEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTCSCCEECC
T ss_pred CCCCEEEECCCCCEEEEECCCCCEEEEECCCCCEEEEECCCCCCCCEEEEECCCCCEEEEEEEECEEEEEEECCCEEEEE
T ss_conf 98788999699999999718998899993899668974369866840899938998898631000035542112000000
Q ss_pred EECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEECCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCC
Q ss_conf 81799874899996899999999779949999989990689963048875899975999699999689939999889970
Q 001462 138 YKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFE 217 (1074)
Q Consensus 138 lk~h~~~VssIafSPdG~~LvSgs~DGsI~IWDl~tgk~i~~l~~h~g~ItsLafSPdg~lLaTGs~DGtI~IWDl~tge 217 (1074)
.. .......+++.++++++++-..+..+..++...................+++.+++.++++...++.|..++.....
T Consensus 94 ~~-~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~ 172 (260)
T d1rwia_ 94 FD-GLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNN 172 (260)
T ss_dssp CC-SCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCC
T ss_pred EE-EEEECCCCCCCCCCEEEEECCCCCCCCCCCCCCCEEEEEEECCCCCCCEEEECCCCCEEEECCCCCCCCCCCCCCCE
T ss_conf 10-00000000245532057503355532112322220122320366775205454899886410256433222343100
Q ss_pred EEEEECCCCCCEEEEEEECCCCEEEEEECCC-EEEEEECCCEEEECCCC-CCCEEEEEEECCCCEEEEEECCCEEEEE
Q ss_conf 8875179988847999916998999997994-99999368723201026-8761457994599999999879929999
Q 001462 218 LIGSTRPEVTGVHAITFHPDGRTLFSGFDDN-LKVYSWEPVICHDSVDM-GWSTLGDLCINDGKLLGCSFYRNSVGIW 293 (1074)
Q Consensus 218 ~i~~l~~~~~~ItsIafSPDG~~LasGsd~~-I~Iwdl~s~~~~~~i~~-~~s~~~~l~spDGklLatgs~DGsI~IW 293 (1074)
..............+++.++|.++++...+. +..++............ ...+....+.++|.++++-..++.|...
T Consensus 173 ~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~~~~~~~~~~~P~~i~~d~~g~l~vad~~~~rI~~i 250 (260)
T d1rwia_ 173 QVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKL 250 (260)
T ss_dssp EEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSCCEECCCCSCCCEEEEEECTTCCEEEEEGGGTEEEEE
T ss_pred EEEEECCCCCCCCCCEEEEEEEEEEEECCCCEEEEEECCCCEEEEECCCCCCCEEEEEEECCCCEEEEECCCCEEEEE
T ss_conf 122210114787631231000134321489989999699976999706998981799990899999997999989999
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.26 E-value=6e-08 Score=65.16 Aligned_cols=235 Identities=12% Similarity=0.204 Sum_probs=109.2
Q ss_pred CEEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEC------CCCCEEEEEECCCCC-EEEEE-ECCCEEEEEECC
Q ss_conf 8799999128993999997899099998799933799507------998947999938999-99999-869919999869
Q 001462 17 NVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCG------LSSPVDSVAFDSAEV-LVLAG-ASTGVIKLWDLE 88 (1074)
Q Consensus 17 ~VtsIafSPdg~~lLaTGs~DGtI~IWDi~t~k~l~sl~~------hs~~VtsIafSpdg~-~LatG-s~DG~I~IWDl~ 88 (1074)
....+++++++ +++++-..++.|++|+. .+..+..+.. .......+.+..+.. .++.. +.++.|..++.
T Consensus 24 ~P~gvavd~dg-~i~VaD~~n~rI~v~d~-~G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~- 100 (279)
T d1q7fa_ 24 EPSGVAVNAQN-DIIVADTNNHRIQIFDK-EGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQ- 100 (279)
T ss_dssp CEEEEEECTTC-CEEEEEGGGTEEEEECT-TSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECT-
T ss_pred CCCEEEECCCC-CEEEEECCCCEEEEEEC-CCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCC-
T ss_conf 90079994999-89999799898999969-9999998166578866422663000123445520000477531000002-
Q ss_pred CCEEEEEEE-CCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEEE--CCCCCEEEEEECCCCCEEEEEECCCE
Q ss_conf 990699980-789983899993799899999789809999889990799981--79987489999689999999977994
Q 001462 89 ESKMVRTLT-GHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYK--GHTRGINTIRFTPDGRWVVSGGFDNV 165 (1074)
Q Consensus 89 sgk~i~tl~-~h~~~VtsIafSPdg~~LaSgs~DGsI~IWDi~sg~~i~~lk--~h~~~VssIafSPdG~~LvSgs~DGs 165 (1074)
.+.....+. ........+++.+++..+++....+.+.+++. .+..+..+. .+......+++.+++..+++....+.
T Consensus 101 ~g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~-~g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~ 179 (279)
T d1q7fa_ 101 YGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHC 179 (279)
T ss_dssp TSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECT-TSCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTE
T ss_pred CCCCEEECCCCCCCCCCEECCCCCCCEEEEEECCCEEEEECC-CCCEEECCCCCCCCCCCCEEEECCCEEEEEEECCCCC
T ss_conf 563024038886425420000147847999632632567626-8750100220010256624320120017862013551
Q ss_pred EEEEECCCCCEEEEEE--ECCCCEEEEEECCCCCEEEEEEC-CCEEEEEECCCCCEEEEECC--CCCCEEEEEEECCCCE
Q ss_conf 9999989990689963--04887589997599969999968-99399998899708875179--9888479999169989
Q 001462 166 VKVWDLTAGKLLHDFK--FHEGHIRSIDFHPLEFLLATGSA-DRTVKFWDLETFELIGSTRP--EVTGVHAITFHPDGRT 240 (1074)
Q Consensus 166 I~IWDl~tgk~i~~l~--~h~g~ItsLafSPdg~lLaTGs~-DGtI~IWDl~tge~i~~l~~--~~~~ItsIafSPDG~~ 240 (1074)
|++|+. .++.+..+. +.......+++.++++++++-.. ++.|.+|+. .++.+..+.. .......+++.++|.+
T Consensus 180 V~~~d~-~G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~-~G~~~~~~~~~~~~~~p~~vav~~dG~l 257 (279)
T d1q7fa_ 180 VKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMDDGSV 257 (279)
T ss_dssp EEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEETTTEE
T ss_pred EEEEEC-CCCEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEECC-CCCEEEEEECCCCCCCEEEEEEECCCCE
T ss_conf 002304-79444530113211487623231478699997899808999999-9999999968888898837999089919
Q ss_pred EEEEECCCEEEEEECCC
Q ss_conf 99997994999993687
Q 001462 241 LFSGFDDNLKVYSWEPV 257 (1074)
Q Consensus 241 LasGsd~~I~Iwdl~s~ 257 (1074)
+++..++.|++|.+...
T Consensus 258 ~V~~~n~~v~~fr~~~~ 274 (279)
T d1q7fa_ 258 VLASKDYRLYIYRYVQL 274 (279)
T ss_dssp EEEETTTEEEEEECSCC
T ss_pred EEEECCCEEEEEEEEEE
T ss_conf 99918996999872203
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.06 E-value=4.7e-07 Score=59.15 Aligned_cols=50 Identities=14% Similarity=0.092 Sum_probs=18.9
Q ss_pred CCCCEEEEEECCCEEEEEECCCCCEEEEECCC-CCCCCCCEEEEEECCCCC
Q ss_conf 59999999987992999994799324531278-999998631999969999
Q 001462 276 NDGKLLGCSFYRNSVGIWVADVSHVEPYGVGA-PEPDQSICTEVKFNPPGS 325 (1074)
Q Consensus 276 pDGklLatgs~DGsI~IWDld~~~l~~~~l~~-~~~~~~~ItsVaFSPDGs 325 (1074)
.+|++.++....+.|.+|+-+...+..+.+.. ...+...+++++|.|++.
T Consensus 237 ~~G~l~Va~~~~g~V~~~~p~G~~l~~i~~P~~~~~~~~~~~~~~~~~~~~ 287 (319)
T d2dg1a1 237 SDDNLYVAMYGQGRVLVFNKRGYPIGQILIPGRDEGHMLRSTHPQFIPGTN 287 (319)
T ss_dssp TTCCEEEEEETTTEEEEECTTSCEEEEEECTTGGGTCSCBCCEEEECTTSC
T ss_pred CCCCEEEEECCCCEEEEECCCCCEEEEEECCCCCCCCCCEEEEEEEECCCC
T ss_conf 899999998489989999799959889968875778675046677807998
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.04 E-value=5.8e-07 Score=58.56 Aligned_cols=231 Identities=9% Similarity=0.015 Sum_probs=131.0
Q ss_pred EECCCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEEEC----CCEEEEEE
Q ss_conf 84479987999991289939999978990999987999337995079989479999389999999986----99199998
Q 001462 11 FVAHSANVNCISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGAS----TGVIKLWD 86 (1074)
Q Consensus 11 L~gHss~VtsIafSPdg~~lLaTGs~DGtI~IWDi~t~k~l~sl~~hs~~VtsIafSpdg~~LatGs~----DG~I~IWD 86 (1074)
+......+..++|.++| +++++-...+.|+.|+.........+.........++|+++|+++++... .+.+...+
T Consensus 35 ~~~~~~~lEG~~~D~~G-~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~ 113 (319)
T d2dg1a1 35 ISKKGLQLEGLNFDRQG-QLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAAT 113 (319)
T ss_dssp EESSCCCEEEEEECTTS-CEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEEC
T ss_pred ECCCCCCCEECEECCCC-CEEEEECCCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEECCCCCCCEEEEEEC
T ss_conf 14688674707899999-99999779999999989999599999489987038999999999999568973110499873
Q ss_pred CCCCEEEEEEEC--CCCCEEEEEECCCCCEEEEEEC------CCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEE
Q ss_conf 699906999807--8998389999379989999978------98099998899907999817998748999968999999
Q 001462 87 LEESKMVRTLTG--HKSNCTAVEFHPFGEFFASGCM------DTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVV 158 (1074)
Q Consensus 87 l~sgk~i~tl~~--h~~~VtsIafSPdg~~LaSgs~------DGsI~IWDi~sg~~i~~lk~h~~~VssIafSPdG~~Lv 158 (1074)
............ .......+.+.++|+++++... .+.++.++...+. +..+.........++|+++++.|+
T Consensus 114 ~~~~~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~-~~~~~~~~~~pnGia~s~dg~~ly 192 (319)
T d2dg1a1 114 ENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRT-VTPIIQNISVANGIALSTDEKVLW 192 (319)
T ss_dssp TTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCC-EEEEEEEESSEEEEEECTTSSEEE
T ss_pred CCCCEEEEECCCCCCCCCCCCEEEEECCCEEECCCCCCCCCCCCEEEEEECCCCE-EEEEEECCCEEEEEEECCCCCEEE
T ss_conf 8996364442677755587522677306532001354002574215788416633-578861233010001012221278
Q ss_pred EE-ECCCEEEEEECCCC-CEEEE-------EEECCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECCC----
Q ss_conf 99-77994999998999-06899-------6304887589997599969999968993999988997088751799----
Q 001462 159 SG-GFDNVVKVWDLTAG-KLLHD-------FKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPE---- 225 (1074)
Q Consensus 159 Sg-s~DGsI~IWDl~tg-k~i~~-------l~~h~g~ItsLafSPdg~lLaTGs~DGtI~IWDl~tge~i~~l~~~---- 225 (1074)
.+ ...+.|..|++... ..... ..........+++..+|++.++...++.|.+|+. .++.+..+...
T Consensus 193 vad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p-~G~~l~~i~~P~~~~ 271 (319)
T d2dg1a1 193 VTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDE 271 (319)
T ss_dssp EEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGG
T ss_pred EECCCCCCEEEEEECCCCCEECCCCCEEEECCCCCCCEEEEEECCCCCEEEEECCCCEEEEECC-CCCEEEEEECCCCCC
T ss_conf 7404689147999769983620246333312577641036417389999999848998999979-995988996887577
Q ss_pred --CCCEEEEEEECCCCEEEEE
Q ss_conf --8884799991699899999
Q 001462 226 --VTGVHAITFHPDGRTLFSG 244 (1074)
Q Consensus 226 --~~~ItsIafSPDG~~LasG 244 (1074)
...+++++|.+++..+++.
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~t 292 (319)
T d2dg1a1 272 GHMLRSTHPQFIPGTNQLIIC 292 (319)
T ss_dssp TCSCBCCEEEECTTSCEEEEE
T ss_pred CCCCEEEEEEEECCCCEEEEE
T ss_conf 867504667780799889998
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=99.01 E-value=7.3e-07 Score=57.90 Aligned_cols=101 Identities=14% Similarity=0.084 Sum_probs=53.4
Q ss_pred CCEEEEEECCCCCEEEEEEC-------CCEEEEEECCCCEEEEEEECC----CCCEEEEEECCCCCEEEEEECCCEEEEE
Q ss_conf 89479999389999999986-------991999986999069998078----9983899993799899999789809999
Q 001462 59 SPVDSVAFDSAEVLVLAGAS-------TGVIKLWDLEESKMVRTLTGH----KSNCTAVEFHPFGEFFASGCMDTNLKIW 127 (1074)
Q Consensus 59 ~~VtsIafSpdg~~LatGs~-------DG~I~IWDl~sgk~i~tl~~h----~~~VtsIafSPdg~~LaSgs~DGsI~IW 127 (1074)
.....++|.++|+++++... +|.|..||..++......... ...-..+.|.++++.++++...+.+..+
T Consensus 18 ~g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~i~~~ 97 (314)
T d1pjxa_ 18 PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVV 97 (314)
T ss_dssp TTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEEE
T ss_pred CCCEEEEEECCCCEEEEECCCCCCCCCCCEEEEEECCCCCEEEEECCCCCCCCCCCEEEEEECCCCEEEEEECCCEEEEE
T ss_conf 89717399699999999875402345299999998999959999777655678853069990799989999779839999
Q ss_pred ECCCCEEEEEEECCC----CCEEEEEECCCCCEEEE
Q ss_conf 889990799981799----87489999689999999
Q 001462 128 DIRKKGCIHTYKGHT----RGINTIRFTPDGRWVVS 159 (1074)
Q Consensus 128 Di~sg~~i~~lk~h~----~~VssIafSPdG~~LvS 159 (1074)
+.............. .....+++.++|.+.++
T Consensus 98 ~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvt 133 (314)
T d1pjxa_ 98 QTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWIT 133 (314)
T ss_dssp ETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEE
T ss_pred ECCCCEEEEEECCCCCCCCCCCCEEEECCCCCEEEE
T ss_conf 477747999733432454578727898889989991
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.98 E-value=9.4e-07 Score=57.17 Aligned_cols=231 Identities=12% Similarity=0.148 Sum_probs=155.3
Q ss_pred CEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEEECC------CCCEEEEEECCCCC-EEEEE-ECCCEEEEEECCC
Q ss_conf 9479999389999999986991999986999069998078------99838999937998-99999-7898099998899
Q 001462 60 PVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGH------KSNCTAVEFHPFGE-FFASG-CMDTNLKIWDIRK 131 (1074)
Q Consensus 60 ~VtsIafSpdg~~LatGs~DG~I~IWDl~sgk~i~tl~~h------~~~VtsIafSPdg~-~LaSg-s~DGsI~IWDi~s 131 (1074)
....++++++++++++-..++.|.+||. +++.+..+... ...-..+.+..+.. ++++. +.++.|..++. .
T Consensus 24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~-~G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~ 101 (279)
T d1q7fa_ 24 EPSGVAVNAQNDIIVADTNNHRIQIFDK-EGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQ-Y 101 (279)
T ss_dssp CEEEEEECTTCCEEEEEGGGTEEEEECT-TSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECT-T
T ss_pred CCCEEEECCCCCEEEEECCCCEEEEEEC-CCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCC-C
T ss_conf 9007999499989999799898999969-9999998166578866422663000123445520000477531000002-5
Q ss_pred CEEEEEEE-CCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEE--ECCCCEEEEEECCCCCEEEEEECCCEE
Q ss_conf 90799981-799874899996899999999779949999989990689963--048875899975999699999689939
Q 001462 132 KGCIHTYK-GHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFK--FHEGHIRSIDFHPLEFLLATGSADRTV 208 (1074)
Q Consensus 132 g~~i~~lk-~h~~~VssIafSPdG~~LvSgs~DGsI~IWDl~tgk~i~~l~--~h~g~ItsLafSPdg~lLaTGs~DGtI 208 (1074)
+.....+. ........+++.+++.++++....+.+.+++. .++.+..+. .+......+++.+++.++++....+.|
T Consensus 102 g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~-~g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~V 180 (279)
T d1q7fa_ 102 GQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCV 180 (279)
T ss_dssp SCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECT-TSCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEE
T ss_pred CCCEEECCCCCCCCCCEECCCCCCCEEEEEECCCEEEEECC-CCCEEECCCCCCCCCCCCEEEECCCEEEEEEECCCCCE
T ss_conf 63024038886425420000147847999632632567626-87501002200102566243201200178620135510
Q ss_pred EEEECCCCCEEEEECC--CCCCEEEEEEECCCCEEEEEEC-C-CEEEEEECCCEEEECCCC---CCCEEEEEEECCCCEE
Q ss_conf 9998899708875179--9888479999169989999979-9-499999368723201026---8761457994599999
Q 001462 209 KFWDLETFELIGSTRP--EVTGVHAITFHPDGRTLFSGFD-D-NLKVYSWEPVICHDSVDM---GWSTLGDLCINDGKLL 281 (1074)
Q Consensus 209 ~IWDl~tge~i~~l~~--~~~~ItsIafSPDG~~LasGsd-~-~I~Iwdl~s~~~~~~i~~---~~s~~~~l~spDGklL 281 (1074)
++|+.. ++.+..+.. .......+++.++|+++++... + .+.+|+-+ +.....+.. ...+....+.+||.++
T Consensus 181 ~~~d~~-G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~~-G~~~~~~~~~~~~~~p~~vav~~dG~l~ 258 (279)
T d1q7fa_ 181 KVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD-GQLISALESKVKHAQCFDVALMDDGSVV 258 (279)
T ss_dssp EEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT-SCEEEEEEESSCCSCEEEEEEETTTEEE
T ss_pred EEEECC-CCEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEECCC-CCEEEEEECCCCCCCEEEEEEECCCCEE
T ss_conf 023047-94445301132114876232314786999978998089999999-9999999688888988379990899199
Q ss_pred EEEECCCEEEEEECC
Q ss_conf 999879929999947
Q 001462 282 GCSFYRNSVGIWVAD 296 (1074)
Q Consensus 282 atgs~DGsI~IWDld 296 (1074)
++ ..++.|++|...
T Consensus 259 V~-~~n~~v~~fr~~ 272 (279)
T d1q7fa_ 259 LA-SKDYRLYIYRYV 272 (279)
T ss_dssp EE-ETTTEEEEEECS
T ss_pred EE-ECCCEEEEEEEE
T ss_conf 99-189969998722
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.94 E-value=1.3e-06 Score=56.25 Aligned_cols=138 Identities=13% Similarity=0.113 Sum_probs=80.6
Q ss_pred EEECCCCCEEEEEECCCEEEEEECCCCEEEEEEECC---CCCEEEEEECCCCCEEEEEEC---------CCEEEEEECCC
Q ss_conf 999389999999986991999986999069998078---998389999379989999978---------98099998899
Q 001462 64 VAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGH---KSNCTAVEFHPFGEFFASGCM---------DTNLKIWDIRK 131 (1074)
Q Consensus 64 IafSpdg~~LatGs~DG~I~IWDl~sgk~i~tl~~h---~~~VtsIafSPdg~~LaSgs~---------DGsI~IWDi~s 131 (1074)
..|.+++.++.. ..+|.|.+|++.+++....+... ...+....|+||+++++.... .+.+.+||+.+
T Consensus 22 ~~W~~~~~~~~~-~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~ 100 (465)
T d1xfda1 22 AKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPH 100 (465)
T ss_dssp CCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSS
T ss_pred CEEECCCCEEEE-ECCCCEEEEECCCCCEEEEECCCCCCCCCCCEEEECCCCCEEEEEECCCCEEEEECCCCEEEEECCC
T ss_conf 789179848999-2899699998789988998727644445532138989888699998451004760335289998568
Q ss_pred CEEEEEEE--CCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEE-ECCCC-----------------EEEEE
Q ss_conf 90799981--799874899996899999999779949999989990689963-04887-----------------58999
Q 001462 132 KGCIHTYK--GHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFK-FHEGH-----------------IRSID 191 (1074)
Q Consensus 132 g~~i~~lk--~h~~~VssIafSPdG~~LvSgs~DGsI~IWDl~tgk~i~~l~-~h~g~-----------------ItsLa 191 (1074)
+....... .....+....|+|||+.++... ++.|++.+...+...+... +..+. -..+.
T Consensus 101 ~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~ 179 (465)
T d1xfda1 101 GDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHW 179 (465)
T ss_dssp CCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEE
T ss_pred CCEEECCCCCCCCCCCCEEEECCCCCEEEEEE-CCEEEEEECCCCCEEEEECCCCCCEEECCCCCHHHHHHHCCCCCEEE
T ss_conf 84564157667764311002426785699996-13299995489965897112676604436643100123036643489
Q ss_pred ECCCCCEEEEEE
Q ss_conf 759996999996
Q 001462 192 FHPLEFLLATGS 203 (1074)
Q Consensus 192 fSPdg~lLaTGs 203 (1074)
|+|||..|+...
T Consensus 180 WSPDgk~iaf~~ 191 (465)
T d1xfda1 180 WSPDGTRLAYAA 191 (465)
T ss_dssp ECTTSSEEEEEE
T ss_pred ECCCCCEEEEEE
T ss_conf 779898689999
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.78 E-value=4.4e-06 Score=52.69 Aligned_cols=92 Identities=15% Similarity=0.179 Sum_probs=37.4
Q ss_pred CCC--CCEEEEEECCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEEC-C-----CEEEEEECCCCEEEEEE
Q ss_conf 389--999999986991999986999069998078998389999379989999978-9-----80999988999079998
Q 001462 67 DSA--EVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCM-D-----TNLKIWDIRKKGCIHTY 138 (1074)
Q Consensus 67 Spd--g~~LatGs~DG~I~IWDl~sgk~i~tl~~h~~~VtsIafSPdg~~LaSgs~-D-----GsI~IWDi~sg~~i~~l 138 (1074)
+|+ |+.++... +|.|++.|+..++.. .+..+...+....|+|||+.|+.... + ..|++++...+......
T Consensus 7 sPdi~G~~v~f~~-~~dl~~~d~~~g~~~-~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~lt 84 (281)
T d1k32a2 7 NPDIHGDRIIFVC-CDDLWEHDLKSGSTR-KIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRIT 84 (281)
T ss_dssp EEEEETTEEEEEE-TTEEEEEETTTCCEE-EEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECC
T ss_pred CCCCCCCEEEEEE-CCCEEEEECCCCCEE-EEECCCCCCCCEEECCCCCEEEEEEEECCCCCCEEEEEEEECCCCEEEEE
T ss_conf 8887999999990-996899989999879-97669985267798789998999986289877228999982599528864
Q ss_pred E------CCCCCEEEEEECCCCCEEEEE
Q ss_conf 1------799874899996899999999
Q 001462 139 K------GHTRGINTIRFTPDGRWVVSG 160 (1074)
Q Consensus 139 k------~h~~~VssIafSPdG~~LvSg 160 (1074)
. ..........|+|+|+.++..
T Consensus 85 ~~~~~~~~~~~~~~~~~~spdg~~l~~~ 112 (281)
T d1k32a2 85 YFSGKSTGRRMFTDVAGFDPDGNLIIST 112 (281)
T ss_dssp CCCEEEETTEECSEEEEECTTCCEEEEE
T ss_pred ECCCCCCCCCCCCCCCCCCCCCCEEEEE
T ss_conf 1688754764443431027988779999
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.69 E-value=8.6e-06 Score=50.77 Aligned_cols=217 Identities=14% Similarity=0.052 Sum_probs=77.8
Q ss_pred EEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEEECC
Q ss_conf 99991289939999978990999987999337995079989479999389999999986991999986999069998078
Q 001462 20 CISIGKKACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGH 99 (1074)
Q Consensus 20 sIafSPdg~~lLaTGs~DGtI~IWDi~t~k~l~sl~~hs~~VtsIafSpdg~~LatGs~DG~I~IWDl~sgk~i~tl~~h 99 (1074)
+..|++....++++--..+.|..|+..+++.. .+. ....+.++++.+++.++++ +.+ .+.++|..+++........
T Consensus 22 gp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~-~~~-~~~~~~~i~~~~dg~l~va-~~~-gl~~~d~~tg~~~~l~~~~ 97 (295)
T d2ghsa1 22 GPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDSKQLIA-SDD-GLFLRDTATGVLTLHAELE 97 (295)
T ss_dssp EEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTEEEEE-ETT-EEEEEETTTCCEEEEECSS
T ss_pred CCEEECCCCEEEEEECCCCEEEEEECCCCEEE-EEE-CCCCCEEEEEECCCCEEEE-EEC-CCEEEECCCCEEEEEEEEE
T ss_conf 87598999999999878999999989989599-998-9998179899659988999-737-6389504645135786640
Q ss_pred ----CCCEEEEEECCCCCEEEEEEC----CCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEE-CCCEEEEEE
Q ss_conf ----998389999379989999978----98099998899907999817998748999968999999997-799499999
Q 001462 100 ----KSNCTAVEFHPFGEFFASGCM----DTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGG-FDNVVKVWD 170 (1074)
Q Consensus 100 ----~~~VtsIafSPdg~~LaSgs~----DGsI~IWDi~sg~~i~~lk~h~~~VssIafSPdG~~LvSgs-~DGsI~IWD 170 (1074)
...+..+.+.++|++.++... .+.-.+|.+..+........ ......++|+++++.++.+. ..+.|..|+
T Consensus 98 ~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~-~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~ 176 (295)
T d2ghsa1 98 SDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFAD-ISIPNSICFSPDGTTGYFVDTKVNRLMRVP 176 (295)
T ss_dssp TTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEE-ESSEEEEEECTTSCEEEEEETTTCEEEEEE
T ss_pred CCCCCCCCEEEEECCCCCEEEEECCCCCCCCCEEEEEECCCCEEEEEEC-CCCCCEEEECCCCCEEEEEECCCCEEEEEE
T ss_conf 4787661013579799999887426431333305766229968998650-687640246587766898515663246764
Q ss_pred CCCC------CE--EEEEEECCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEEE-CCCCEE
Q ss_conf 8999------06--89963048875899975999699999689939999889970887517998884799991-699899
Q 001462 171 LTAG------KL--LHDFKFHEGHIRSIDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEVTGVHAITFH-PDGRTL 241 (1074)
Q Consensus 171 l~tg------k~--i~~l~~h~g~ItsLafSPdg~lLaTGs~DGtI~IWDl~tge~i~~l~~~~~~ItsIafS-PDG~~L 241 (1074)
+... +. ...+....+....+++..+|++.++....+.|..||. .++.+..+......+++++|- ++.+.|
T Consensus 177 ~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp-~G~~~~~i~lP~~~~T~~~FGG~d~~~L 255 (295)
T d2ghsa1 177 LDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGPDASRL 255 (295)
T ss_dssp BCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEESTTSCEE
T ss_pred ECCCCCCCCCCEEEEECCCCCCCCCCCEEECCCCCEEEEEECCCCEEEECC-CCCEEEEECCCCCCEEEEEEECCCCCEE
T ss_conf 535555324535788416755566632678699998953207884688569-9928668638998527989828999999
Q ss_pred E
Q ss_conf 9
Q 001462 242 F 242 (1074)
Q Consensus 242 a 242 (1074)
+
T Consensus 256 y 256 (295)
T d2ghsa1 256 L 256 (295)
T ss_dssp E
T ss_pred E
T ss_conf 9
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.67 E-value=9.9e-06 Score=50.34 Aligned_cols=93 Identities=9% Similarity=0.079 Sum_probs=41.5
Q ss_pred EECC--CCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEEEC-C-----CEEEEEECCCCEEEE
Q ss_conf 9128--9939999978990999987999337995079989479999389999999986-9-----919999869990699
Q 001462 23 IGKK--ACRFLITGGDDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGAS-T-----GVIKLWDLEESKMVR 94 (1074)
Q Consensus 23 fSPd--g~~lLaTGs~DGtI~IWDi~t~k~l~sl~~hs~~VtsIafSpdg~~LatGs~-D-----G~I~IWDl~sgk~i~ 94 (1074)
.+|+ |.+++++ .+|.|.+.++..++. ..+..+...+....|||||+.|+.... + +.|.+++...++...
T Consensus 6 ~sPdi~G~~v~f~--~~~dl~~~d~~~g~~-~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~ 82 (281)
T d1k32a2 6 LNPDIHGDRIIFV--CCDDLWEHDLKSGST-RKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKR 82 (281)
T ss_dssp EEEEEETTEEEEE--ETTEEEEEETTTCCE-EEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEE
T ss_pred CCCCCCCCEEEEE--ECCCEEEEECCCCCE-EEEECCCCCCCCEEECCCCCEEEEEEEECCCCCCEEEEEEEECCCCEEE
T ss_conf 5888799999999--099689998999987-9976699852677987899989999862898772289999825995288
Q ss_pred EEEC------CCCCEEEEEECCCCCEEEEE
Q ss_conf 9807------89983899993799899999
Q 001462 95 TLTG------HKSNCTAVEFHPFGEFFASG 118 (1074)
Q Consensus 95 tl~~------h~~~VtsIafSPdg~~LaSg 118 (1074)
.... .........|+|+++.++..
T Consensus 83 lt~~~~~~~~~~~~~~~~~~spdg~~l~~~ 112 (281)
T d1k32a2 83 ITYFSGKSTGRRMFTDVAGFDPDGNLIIST 112 (281)
T ss_dssp CCCCCEEEETTEECSEEEEECTTCCEEEEE
T ss_pred EEECCCCCCCCCCCCCCCCCCCCCCEEEEE
T ss_conf 641688754764443431027988779999
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=98.60 E-value=1.5e-05 Score=49.09 Aligned_cols=189 Identities=11% Similarity=0.040 Sum_probs=109.3
Q ss_pred EEEEEE-CCCEEEEEEC-CCCCEEEEEECCCC-----------CEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEE
Q ss_conf 999997-8990999987-99933799507998-----------9479999389999999986991999986999069998
Q 001462 30 FLITGG-DDQKVNLWAI-GKPTALMSLCGLSS-----------PVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTL 96 (1074)
Q Consensus 30 lLaTGs-~DGtI~IWDi-~t~k~l~sl~~hs~-----------~VtsIafSpdg~~LatGs~DG~I~IWDl~sgk~i~tl 96 (1074)
.++.++ .++.|...|. .+++.+..+..... .-..+++. +..++.++.+|.+...|.++++.....
T Consensus 64 ~vyv~t~~~~~v~Alda~~tG~~~W~~~~~~~~~~~~~~~~~~~~rg~a~~--~~~i~~~~~~g~l~alda~tG~~~w~~ 141 (571)
T d2ad6a1 64 MMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYG--AGQIVKKQANGHLLALDAKTGKINWEV 141 (571)
T ss_dssp EEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred EEEEECCCCCEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEE--CCEEEEEECCCCEEEEEHHHHHHHCCC
T ss_conf 999942879959999489998668883588886544200247688862650--886999917975782100211220234
Q ss_pred ECCC----CCEEEEEECCCCCEEEEEE------CCCEEEEEECCCCEEEEEEECCC------------------------
Q ss_conf 0789----9838999937998999997------89809999889990799981799------------------------
Q 001462 97 TGHK----SNCTAVEFHPFGEFFASGC------MDTNLKIWDIRKKGCIHTYKGHT------------------------ 142 (1074)
Q Consensus 97 ~~h~----~~VtsIafSPdg~~LaSgs------~DGsI~IWDi~sg~~i~~lk~h~------------------------ 142 (1074)
.... ..++.--.-. +..++++. ..|.|.-+|+.+++.+..+....
T Consensus 142 ~~~~~~~~~~~t~~p~v~-~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (571)
T d2ad6a1 142 EVCDPKVGSTLTQAPFVA-KDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLG 220 (571)
T ss_dssp ECCCGGGTCBCCSCCEEE-TTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHH
T ss_pred CCCCCCCCCCEEECCEEE-CCEEEEEECCCCCCCCCCEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 445544324145367575-8858885023442346747999888985889970468864445555445443346755556
Q ss_pred -------------CCE-EEEEECCCCCEEEEEEC----------------CCEEEEEECCCCCEEEEEEECCCCE-----
Q ss_conf -------------874-89999689999999977----------------9949999989990689963048875-----
Q 001462 143 -------------RGI-NTIRFTPDGRWVVSGGF----------------DNVVKVWDLTAGKLLHDFKFHEGHI----- 187 (1074)
Q Consensus 143 -------------~~V-ssIafSPdG~~LvSgs~----------------DGsI~IWDl~tgk~i~~l~~h~g~I----- 187 (1074)
..+ ...++.+....++.+.. ...+...|..+++.+..++.....+
T Consensus 221 ~~~~~~~~~~~~gg~vW~~~s~D~~~g~~y~~tg~~~p~~~~~r~g~n~~s~svvAld~~TG~~~W~~q~~~~D~Wd~D~ 300 (571)
T d2ad6a1 221 TKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAG 300 (571)
T ss_dssp HHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCHHCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEEECCCHHHEECCCCCCCCCCCCCC
T ss_conf 64567763143797520463305200834564034567522345663355653254412550110012456763314656
Q ss_pred ----EEEEECCCC---CEEEEEECCCEEEEEECCCCCEEEE
Q ss_conf ----899975999---6999996899399998899708875
Q 001462 188 ----RSIDFHPLE---FLLATGSADRTVKFWDLETFELIGS 221 (1074)
Q Consensus 188 ----tsLafSPdg---~lLaTGs~DGtI~IWDl~tge~i~~ 221 (1074)
....+..++ ..++.++.+|.++++|..+++.+..
T Consensus 301 ~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~tG~~i~~ 341 (571)
T d2ad6a1 301 VNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVA 341 (571)
T ss_dssp CCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEE
T ss_pred CCCCCEEEEECCCCCCCCEEECCCCCEEEEEECCCCCEEEE
T ss_conf 55641145511576654046326564499985689837655
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=98.53 E-value=2.4e-05 Score=47.83 Aligned_cols=190 Identities=12% Similarity=0.044 Sum_probs=84.1
Q ss_pred EEEEEECCCEEEEEECCCCCEEEEEECCCC-----------CEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEEEC
Q ss_conf 999997899099998799933799507998-----------947999938999999998699199998699906999807
Q 001462 30 FLITGGDDQKVNLWAIGKPTALMSLCGLSS-----------PVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTG 98 (1074)
Q Consensus 30 lLaTGs~DGtI~IWDi~t~k~l~sl~~hs~-----------~VtsIafSpdg~~LatGs~DG~I~IWDl~sgk~i~tl~~ 98 (1074)
.++.++.++.|.-.|..+++.+..+..... .-..+... +..++.+..++.|...|..+++.+.....
T Consensus 68 ~vyv~t~~~~v~AlDa~tG~~lW~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~g~l~Alda~tG~~~w~~~~ 145 (560)
T d1kv9a2 68 VIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALW--GDKVYVGTLDGRLIALDAKTGKAIWSQQT 145 (560)
T ss_dssp EEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEE--BTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred EEEEECCCCEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEE--CCEEEEEECCCEEEEEECCCCCEEECCCC
T ss_conf 9999789995999968999879887798776445443224653575046--88499973898799997778957730576
Q ss_pred CCCCE-EEEEECC--CCCEEEEEEC------CCEEEEEECCCCEEEEEEECCC---------------------------
Q ss_conf 89983-8999937--9989999978------9809999889990799981799---------------------------
Q 001462 99 HKSNC-TAVEFHP--FGEFFASGCM------DTNLKIWDIRKKGCIHTYKGHT--------------------------- 142 (1074)
Q Consensus 99 h~~~V-tsIafSP--dg~~LaSgs~------DGsI~IWDi~sg~~i~~lk~h~--------------------------- 142 (1074)
..... ..+.-.| .+..++++.. .|.|.-+|..+++.+..+..-.
T Consensus 146 ~~~~~~~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (560)
T d1kv9a2 146 TDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKL 225 (560)
T ss_dssp SCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHH
T ss_pred CCCCCCEEEEEEEEEECCCCCCCCCCEECCCCCEEEEEECCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 67554045432004506851036531100135538999778862776641003455677643112234566666531002
Q ss_pred ---C-CEEEEEECCCCCEEEEEEC-------------------CCEEEEEECCCCCEEEEEEECCCCEE---------EE
Q ss_conf ---8-7489999689999999977-------------------99499999899906899630488758---------99
Q 001462 143 ---R-GINTIRFTPDGRWVVSGGF-------------------DNVVKVWDLTAGKLLHDFKFHEGHIR---------SI 190 (1074)
Q Consensus 143 ---~-~VssIafSPdG~~LvSgs~-------------------DGsI~IWDl~tgk~i~~l~~h~g~It---------sL 190 (1074)
. .-..+.+.+...+++.+.. ...|...|..+++....++.....+. -.
T Consensus 226 ~~G~~~W~~~s~D~~~~l~y~~tgn~~~~~~~~~~~~~g~n~~s~sivAld~~tG~~~W~~Q~~~~D~wd~d~~~~~~l~ 305 (560)
T d1kv9a2 226 GGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLA 305 (560)
T ss_dssp CEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEE
T ss_pred CCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCEEEEEECCCCCCCCCCCCCEEEEE
T ss_conf 67887556552143468036447887435556424667765453036873377642158871036533234565124420
Q ss_pred EECCCC---CEEEEEECCCEEEEEECCCCCEEEE
Q ss_conf 975999---6999996899399998899708875
Q 001462 191 DFHPLE---FLLATGSADRTVKFWDLETFELIGS 221 (1074)
Q Consensus 191 afSPdg---~lLaTGs~DGtI~IWDl~tge~i~~ 221 (1074)
.+..++ ..++.+..+|.++++|..+++++..
T Consensus 306 ~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~~i~~ 339 (560)
T d1kv9a2 306 ELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISA 339 (560)
T ss_dssp EEEETTEEEEEEEECCTTSEEEEEETTTCCEEEE
T ss_pred EEECCCCEEEEEEECCCCCEEEEEECCCCCCCCC
T ss_conf 0311796025666257653699984688824353
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=98.44 E-value=3.9e-05 Score=46.41 Aligned_cols=191 Identities=12% Similarity=0.046 Sum_probs=104.0
Q ss_pred CEEEEEECCCEEEEEEC-CCCCEEEEEECCCC-----------CEEEEEECCC----CCEEEEEECCCEEEEEECCCCEE
Q ss_conf 39999978990999987-99933799507998-----------9479999389----99999998699199998699906
Q 001462 29 RFLITGGDDQKVNLWAI-GKPTALMSLCGLSS-----------PVDSVAFDSA----EVLVLAGASTGVIKLWDLEESKM 92 (1074)
Q Consensus 29 ~lLaTGs~DGtI~IWDi-~t~k~l~sl~~hs~-----------~VtsIafSpd----g~~LatGs~DG~I~IWDl~sgk~ 92 (1074)
.++++.+.++.+...|. .+++.+..+..... .-+.+++.++ ...++.++.|+.|.-.|.++++.
T Consensus 64 ~ly~~t~~~~~v~a~d~~~tG~~~W~~~~~~~~~~~~~~~~~~~~RGv~~~~~~~~~~~~v~~~t~dg~l~Alda~tG~~ 143 (596)
T d1w6sa_ 64 KMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETGET 143 (596)
T ss_dssp EEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTCCE
T ss_pred EEEEEECCCCCEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCCEEEEEEECCCCEEEECCCCCCE
T ss_conf 99995178996899957998877887038788643432135666651698327998862999980798768543656841
Q ss_pred EEEEECCCC----CEEE-EEECCCCCEEEEEEC------CCEEEEEECCCCEEEEEEECCC-------------------
Q ss_conf 999807899----8389-999379989999978------9809999889990799981799-------------------
Q 001462 93 VRTLTGHKS----NCTA-VEFHPFGEFFASGCM------DTNLKIWDIRKKGCIHTYKGHT------------------- 142 (1074)
Q Consensus 93 i~tl~~h~~----~Vts-IafSPdg~~LaSgs~------DGsI~IWDi~sg~~i~~lk~h~------------------- 142 (1074)
+..+..... .++. ..+. +..++++.. .|.|.-+|..+++.+..+....
T Consensus 144 ~w~~~~~d~~~~~~~t~~P~v~--~~~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~g 221 (596)
T d1w6sa_ 144 VWKVENSDIKVGSTLTIAPYVV--KDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYG 221 (596)
T ss_dssp EEEEECCCGGGTCBCCSCCEEE--TTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGC
T ss_pred ECCCCCCCCCCCCCCCCCCCEE--CCEEEEEECCCCCCCCCCEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCC
T ss_conf 0231014655564224588177--77589930234443357328988788857788653588655455544543333345
Q ss_pred -------------------CCEEEEEECCCCCEEEEEEC----------------CCEEEEEECCCCCEEEEEEECCC--
Q ss_conf -------------------87489999689999999977----------------99499999899906899630488--
Q 001462 143 -------------------RGINTIRFTPDGRWVVSGGF----------------DNVVKVWDLTAGKLLHDFKFHEG-- 185 (1074)
Q Consensus 143 -------------------~~VssIafSPdG~~LvSgs~----------------DGsI~IWDl~tgk~i~~l~~h~g-- 185 (1074)
..-..+.+.+...+++.+.. ...|...|..+++....++....
T Consensus 222 ~~~~~~~tw~g~~~~~gg~~~W~~~s~D~~~~lvy~~tg~~~p~~~~~r~g~n~ys~sivAlD~~TG~~~W~~Q~~~~D~ 301 (596)
T d1w6sa_ 222 QKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDE 301 (596)
T ss_dssp CTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCS
T ss_pred CCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCC
T ss_conf 45546666788733347874225622156777254056455565202356533344430102635500100124030256
Q ss_pred -------CEEEEEE-CCCC---CEEEEEECCCEEEEEECCCCCEEEE
Q ss_conf -------7589997-5999---6999996899399998899708875
Q 001462 186 -------HIRSIDF-HPLE---FLLATGSADRTVKFWDLETFELIGS 221 (1074)
Q Consensus 186 -------~ItsLaf-SPdg---~lLaTGs~DGtI~IWDl~tge~i~~ 221 (1074)
.+..+.. ..++ ..++....+|.++++|..+++.+..
T Consensus 302 Wd~d~~~~~~l~d~~~~~G~~~~~v~~~~k~G~~~vlDr~tG~~i~~ 348 (596)
T d1w6sa_ 302 WDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSA 348 (596)
T ss_dssp SCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEE
T ss_pred CCCCCCCCEEEEECCCCCCCCCCCEECCCCCCCEEEECCCCCCEEEE
T ss_conf 57765421065310333355532100146543225406778825540
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=98.20 E-value=0.00013 Score=42.82 Aligned_cols=66 Identities=17% Similarity=0.051 Sum_probs=29.0
Q ss_pred EEEEEECCCEEEEEECCCCCEEEEEECCC----------CCE-EEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEEE
Q ss_conf 99999789909999879993379950799----------894-799993899999999869919999869990699980
Q 001462 30 FLITGGDDQKVNLWAIGKPTALMSLCGLS----------SPV-DSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLT 97 (1074)
Q Consensus 30 lLaTGs~DGtI~IWDi~t~k~l~sl~~hs----------~~V-tsIafSpdg~~LatGs~DG~I~IWDl~sgk~i~tl~ 97 (1074)
.+++++.++.|.-+|..+++.+..+.... ..+ ..+.+. +..++.++.++.+...|..+++.+....
T Consensus 79 ~vyv~t~~~~v~AlDa~TG~~~W~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~v~~~t~~g~l~alda~tG~~~W~~~ 155 (573)
T d1kb0a2 79 IMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALW--KGKVYVGAWDGRLIALDAATGKEVWHQN 155 (573)
T ss_dssp EEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred EEEEECCCCEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEE--CCCEEEEECCCCEEEECCCCCCCEECCC
T ss_conf 9999789996999958999858786798876533334566566652387--8818997336540666162430010146
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.18 E-value=0.00015 Score=42.48 Aligned_cols=259 Identities=12% Similarity=0.112 Sum_probs=115.6
Q ss_pred EEEEEECCCEEEEEECCCCCEEEEEECCCC---------------------------------------CEE--EEEECC
Q ss_conf 999997899099998799933799507998---------------------------------------947--999938
Q 001462 30 FLITGGDDQKVNLWAIGKPTALMSLCGLSS---------------------------------------PVD--SVAFDS 68 (1074)
Q Consensus 30 lLaTGs~DGtI~IWDi~t~k~l~sl~~hs~---------------------------------------~Vt--sIafSp 68 (1074)
.|.+|+..|.|+++-+..++.+..+..+.. ... .+.|..
T Consensus 15 ~f~SgG~sG~v~v~G~PSmR~l~~ipvF~~~~~~G~G~~~es~~il~~~~~~~t~~~l~~~g~~~~~~GD~HHP~~S~Td 94 (459)
T d1fwxa2 15 GFWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTE 94 (459)
T ss_dssp EEECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCC--------------CCCCCBCCEEEEEET
T ss_pred EEEECCCCCEEEEEECCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
T ss_conf 99407866338999548863587701035787745576446777763356722322332058602357876887514448
Q ss_pred ---CCCEEEEEE-CCCEEEEEECCCCEEEEEEEC-CCCCEEEEEECC--CCCEEEEEECC------------------CE
Q ss_conf ---999999998-699199998699906999807-899838999937--99899999789------------------80
Q 001462 69 ---AEVLVLAGA-STGVIKLWDLEESKMVRTLTG-HKSNCTAVEFHP--FGEFFASGCMD------------------TN 123 (1074)
Q Consensus 69 ---dg~~LatGs-~DG~I~IWDl~sgk~i~tl~~-h~~~VtsIafSP--dg~~LaSgs~D------------------Gs 123 (1074)
||++|++.. .++.|.+.|+...+..+.+.. ....+..+...+ +-.|++..+.+ +.
T Consensus 95 GtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~ 174 (459)
T d1fwxa2 95 GKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNV 174 (459)
T ss_dssp TEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEE
T ss_pred CCCCEEEEEEECCCCCEEEEEECCCEEEEEEEECCCCCCCCEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHCCEE
T ss_conf 85551289997589863899988540566799667887775012025797479973676544459998513240112268
Q ss_pred EEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCE--EEEEECCCCCEEEEEEECCCCEEEEEECCCCCEEEE
Q ss_conf 999988999079998179987489999689999999977994--999998999068996304887589997599969999
Q 001462 124 LKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNV--VKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLAT 201 (1074)
Q Consensus 124 I~IWDi~sg~~i~~lk~h~~~VssIafSPdG~~LvSgs~DGs--I~IWDl~tgk~i~~l~~h~g~ItsLafSPdg~lLaT 201 (1074)
+.++|..+.+....+... .....+.++++|+++++.+.+.. +.+.++.....-...-..-..+ ..+.++|++--.
T Consensus 175 ~t~ID~~tm~V~~QV~V~-g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~ri--e~av~~Gk~~ei 251 (459)
T d1fwxa2 175 FTAVDADKWEVAWQVLVS-GNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEI--EKAIAAGDYQEL 251 (459)
T ss_dssp EEEEETTTTEEEEEEEES-SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHH--HHHHHHTCSEEE
T ss_pred EEEEECCCCEEEEEEEEC-CCHHCCCCCCCCCEEEEEECCCCCCCCHHHCCCCCCEEEEEECHHHH--HHHHHCCCCEEE
T ss_conf 999966776698996408-97201531899998999713556885322225245418999634886--876405993796
Q ss_pred EECCCEEEEEECCCC---CEEEEECCCCCCEEEEEEECCCCEEEEEE--CCCEEEEEECCCE------------EEECCC
Q ss_conf 968993999988997---08875179988847999916998999997--9949999936872------------320102
Q 001462 202 GSADRTVKFWDLETF---ELIGSTRPEVTGVHAITFHPDGRTLFSGF--DDNLKVYSWEPVI------------CHDSVD 264 (1074)
Q Consensus 202 Gs~DGtI~IWDl~tg---e~i~~l~~~~~~ItsIafSPDG~~LasGs--d~~I~Iwdl~s~~------------~~~~i~ 264 (1074)
+.+.+.|.... ..+..+. -......+.++|||++++++. +..+.+++++... ......
T Consensus 252 ----ngV~VVD~~~~~~~~v~~yIP-VpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~e 326 (459)
T d1fwxa2 252 ----NGVKVVDGRKEASSLFTRYIP-IANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE 326 (459)
T ss_dssp ----TTEEEEECSGG--CSSEEEEE-EESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCB
T ss_pred ----CCCEEECCCCCCCCCEEEEEE-CCCCCCCEEECCCCCEEEEECCCCCCEEEEEEHHHHHHHCCCCCCCCCEEEECC
T ss_conf ----994661542367852038986-589877338899997899938858957999822535665046884521796113
Q ss_pred CCCCEEEEEEECCCCEEEEEECCCEEEEEECC
Q ss_conf 68761457994599999999879929999947
Q 001462 265 MGWSTLGDLCINDGKLLGCSFYRNSVGIWVAD 296 (1074)
Q Consensus 265 ~~~s~~~~l~spDGklLatgs~DGsI~IWDld 296 (1074)
.+..++...+...|....+-.-|..|.-|+++
T Consensus 327 lglgPLht~fd~~g~aytslfids~v~kw~~~ 358 (459)
T d1fwxa2 327 LGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIE 358 (459)
T ss_dssp CCSCEEEEEECTTSEEEEEETTTTEEEEEEHH
T ss_pred CCCCCCCCCCCCCCEEEEEEECCCEEEEEECC
T ss_conf 57676620338984299986123169997344
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.16 E-value=0.00016 Score=42.25 Aligned_cols=146 Identities=14% Similarity=-0.019 Sum_probs=60.4
Q ss_pred EEEECCCCC-EEEEEECCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEEECC
Q ss_conf 999938999-9999986991999986999069998078998389999379989999978980999988999079998179
Q 001462 63 SVAFDSAEV-LVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGH 141 (1074)
Q Consensus 63 sIafSpdg~-~LatGs~DG~I~IWDl~sgk~i~tl~~h~~~VtsIafSPdg~~LaSgs~DGsI~IWDi~sg~~i~~lk~h 141 (1074)
...|++... ++.+--..+.|..||..+++.. .+. ....+.++.+.+++.+++ ++.+| +..+|..+++........
T Consensus 22 gp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~-~~~-~~~~~~~i~~~~dg~l~v-a~~~g-l~~~d~~tg~~~~l~~~~ 97 (295)
T d2ghsa1 22 GPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDSKQLI-ASDDG-LFLRDTATGVLTLHAELE 97 (295)
T ss_dssp EEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTEEEE-EETTE-EEEEETTTCCEEEEECSS
T ss_pred CCEEECCCCEEEEEECCCCEEEEEECCCCEEE-EEE-CCCCCEEEEEECCCCEEE-EEECC-CEEEECCCCEEEEEEEEE
T ss_conf 87598999999999878999999989989599-998-999817989965998899-97376-389504645135786640
Q ss_pred ----CCCEEEEEECCCCCEEEEEEC----CCEEEEEECCCCCEEEEEEECCCCEEEEEECCCCCEEEEEE-CCCEEEEEE
Q ss_conf ----987489999689999999977----99499999899906899630488758999759996999996-899399998
Q 001462 142 ----TRGINTIRFTPDGRWVVSGGF----DNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGS-ADRTVKFWD 212 (1074)
Q Consensus 142 ----~~~VssIafSPdG~~LvSgs~----DGsI~IWDl~tgk~i~~l~~h~g~ItsLafSPdg~lLaTGs-~DGtI~IWD 212 (1074)
...+..+.+.++|.+.++... .+.-.+|.+..++....+.. -.....+.|++++..++... ..+.|..|+
T Consensus 98 ~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~-~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~ 176 (295)
T d2ghsa1 98 SDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFAD-ISIPNSICFSPDGTTGYFVDTKVNRLMRVP 176 (295)
T ss_dssp TTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEE-ESSEEEEEECTTSCEEEEEETTTCEEEEEE
T ss_pred CCCCCCCCEEEEECCCCCEEEEECCCCCCCCCEEEEEECCCCEEEEEEC-CCCCCEEEECCCCCEEEEEECCCCEEEEEE
T ss_conf 4787661013579799999887426431333305766229968998650-687640246587766898515663246764
Q ss_pred C
Q ss_conf 8
Q 001462 213 L 213 (1074)
Q Consensus 213 l 213 (1074)
+
T Consensus 177 ~ 177 (295)
T d2ghsa1 177 L 177 (295)
T ss_dssp B
T ss_pred E
T ss_conf 5
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=97.89 E-value=0.00051 Score=38.93 Aligned_cols=93 Identities=12% Similarity=0.063 Sum_probs=36.7
Q ss_pred CCCCEEEEEE-CCCEEEEEECCCCCEEEEEEC-CCCCEEEEEEC--CCCCEEEEEECC------------------CEEE
Q ss_conf 8993999997-899099998799933799507-99894799993--899999999869------------------9199
Q 001462 26 KACRFLITGG-DDQKVNLWAIGKPTALMSLCG-LSSPVDSVAFD--SAEVLVLAGAST------------------GVIK 83 (1074)
Q Consensus 26 dg~~lLaTGs-~DGtI~IWDi~t~k~l~sl~~-hs~~VtsIafS--pdg~~LatGs~D------------------G~I~ 83 (1074)
|| ++|++.. .+..|-..|+...+....+.. ....+..+... |+..|++..+.. +.+.
T Consensus 98 DG-rylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~t 176 (459)
T d1fwxa2 98 DG-RFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT 176 (459)
T ss_dssp EE-EEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEEE
T ss_pred CE-EEEEEECCCCCEEEEEECCCEEEEEEEECCCCCCCCEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHCCEEEE
T ss_conf 51-28999758986389998854056679966788777501202579747997367654445999851324011226899
Q ss_pred EEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEEC
Q ss_conf 9986999069998078998389999379989999978
Q 001462 84 LWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCM 120 (1074)
Q Consensus 84 IWDl~sgk~i~tl~~h~~~VtsIafSPdg~~LaSgs~ 120 (1074)
++|..+.+....+.. ......+.++++|+++++.+.
T Consensus 177 ~ID~~tm~V~~QV~V-~g~ld~~~~s~dGK~af~Tsy 212 (459)
T d1fwxa2 177 AVDADKWEVAWQVLV-SGNLDNCDADYEGKWAFSTSY 212 (459)
T ss_dssp EEETTTTEEEEEEEE-SSCCCCEEECSSSSEEEEEES
T ss_pred EEECCCCEEEEEEEE-CCCHHCCCCCCCCCEEEEEEC
T ss_conf 996677669899640-897201531899998999713
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.59 E-value=0.0015 Score=35.87 Aligned_cols=142 Identities=9% Similarity=-0.046 Sum_probs=48.8
Q ss_pred EEEEEECCCCCEEEEEE-CCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEE-ECCCEEEEEECCCCCEEEEE
Q ss_conf 38999937998999997-89809999889990799981799874899996899999999-77994999998999068996
Q 001462 103 CTAVEFHPFGEFFASGC-MDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSG-GFDNVVKVWDLTAGKLLHDF 180 (1074)
Q Consensus 103 VtsIafSPdg~~LaSgs-~DGsI~IWDi~sg~~i~~lk~h~~~VssIafSPdG~~LvSg-s~DGsI~IWDl~tgk~i~~l 180 (1074)
+..++|....+.++.+. .++.|+..++........+......+..+++..-+..|+.+ ...+.|.+.++........+
T Consensus 38 ~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~ 117 (263)
T d1npea_ 38 IIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLF 117 (263)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE
T ss_pred EEEEEEEECCCEEEEEECCCCEEEEEECCCCCCEEEEEECCCCCCEEEEECCCCEEEEECCCCCEEEEEECCCCEEEEEE
T ss_conf 79999985899999998999919999766587289887012642079996368868884267897998805881677771
Q ss_pred EECCCCEEEEEECCCCCEEEEEECC---CEEEEEECCCCCEEEEECCCCCCEEEEEEECCCCEEEEE
Q ss_conf 3048875899975999699999689---939999889970887517998884799991699899999
Q 001462 181 KFHEGHIRSIDFHPLEFLLATGSAD---RTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFSG 244 (1074)
Q Consensus 181 ~~h~g~ItsLafSPdg~lLaTGs~D---GtI~IWDl~tge~i~~l~~~~~~ItsIafSPDG~~LasG 244 (1074)
......+..++++|...+++..... ..|...++..................+++++.+..|+..
T Consensus 118 ~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~~~~~lYw~ 184 (263)
T d1npea_ 118 DTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWV 184 (263)
T ss_dssp CSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEE
T ss_pred CCCCCCCCEEEEECCCCCEEEEECCCCCCEEEEECCCCCCCEEEEEECCCCCCEEEEEECCCEEEEE
T ss_conf 2566687279992566927995348997689996678997236553035555307995047589999
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=97.56 E-value=0.0016 Score=35.65 Aligned_cols=106 Identities=11% Similarity=0.082 Sum_probs=51.9
Q ss_pred EEEEEE-CCCEEEEEECC-CCEEEEEEECCCCC-----------EEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEE
Q ss_conf 999998-69919999869-99069998078998-----------389999379989999978980999988999079998
Q 001462 72 LVLAGA-STGVIKLWDLE-ESKMVRTLTGHKSN-----------CTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTY 138 (1074)
Q Consensus 72 ~LatGs-~DG~I~IWDl~-sgk~i~tl~~h~~~-----------VtsIafSPdg~~LaSgs~DGsI~IWDi~sg~~i~~l 138 (1074)
.+++++ .++.|...|.. +|+.+..+...... -..+++. +..++.++.||.++-.|.++++.+...
T Consensus 64 ~vyv~t~~~~~v~Alda~~tG~~~W~~~~~~~~~~~~~~~~~~~~rg~a~~--~~~i~~~~~~g~l~alda~tG~~~w~~ 141 (571)
T d2ad6a1 64 MMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYG--AGQIVKKQANGHLLALDAKTGKINWEV 141 (571)
T ss_dssp EEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred EEEEECCCCCEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEE--CCEEEEEECCCCEEEEEHHHHHHHCCC
T ss_conf 999942879959999489998668883588886544200247688862650--886999917975782100211220234
Q ss_pred ECCCC----CEEE-EEECCCCCEEEEEE------CCCEEEEEECCCCCEEEEEE
Q ss_conf 17998----7489-99968999999997------79949999989990689963
Q 001462 139 KGHTR----GINT-IRFTPDGRWVVSGG------FDNVVKVWDLTAGKLLHDFK 181 (1074)
Q Consensus 139 k~h~~----~Vss-IafSPdG~~LvSgs------~DGsI~IWDl~tgk~i~~l~ 181 (1074)
..... .++. -.+. ++ .++.+. ..|.|..+|+.+|+.+..+.
T Consensus 142 ~~~~~~~~~~~t~~p~v~-~~-~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~ 193 (571)
T d2ad6a1 142 EVCDPKVGSTLTQAPFVA-KD-TVLMGCSGAELGVRGAVNAFDLKTGELKWRAF 193 (571)
T ss_dssp ECCCGGGTCBCCSCCEEE-TT-EEEEECBCGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred CCCCCCCCCCEEECCEEE-CC-EEEEEECCCCCCCCCCEEEEECCCCCEEEEEE
T ss_conf 445544324145367575-88-58885023442346747999888985889970
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.51 E-value=0.0019 Score=35.19 Aligned_cols=185 Identities=9% Similarity=-0.005 Sum_probs=96.1
Q ss_pred CCCCEEEEEECCCCCEEEEEE-CCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEE-ECCCEEEEEECCCCEE
Q ss_conf 998947999938999999998-69919999869990699980789983899993799899999-7898099998899907
Q 001462 57 LSSPVDSVAFDSAEVLVLAGA-STGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASG-CMDTNLKIWDIRKKGC 134 (1074)
Q Consensus 57 hs~~VtsIafSpdg~~LatGs-~DG~I~IWDl~sgk~i~tl~~h~~~VtsIafSPdg~~LaSg-s~DGsI~IWDi~sg~~ 134 (1074)
+...+..++|....+.++... ..+.|...++........+.........+++..-+..++.+ ...+.|.+.++.....
T Consensus 34 ~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~ 113 (263)
T d1npea_ 34 PAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQR 113 (263)
T ss_dssp EEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred CCCCEEEEEEEECCCEEEEEECCCCEEEEEECCCCCCEEEEEECCCCCCEEEEECCCCEEEEECCCCCEEEEEECCCCEE
T ss_conf 87757999998589999999899991999976658728988701264207999636886888426789799880588167
Q ss_pred EEEEECCCCCEEEEEECCCCCEEEEEECC---CEEEEEECCCCCEEEEEEECCCCEEEEEECCCCCEEEEEE-CCCEEEE
Q ss_conf 99981799874899996899999999779---9499999899906899630488758999759996999996-8993999
Q 001462 135 IHTYKGHTRGINTIRFTPDGRWVVSGGFD---NVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGS-ADRTVKF 210 (1074)
Q Consensus 135 i~~lk~h~~~VssIafSPdG~~LvSgs~D---GsI~IWDl~tgk~i~~l~~h~g~ItsLafSPdg~lLaTGs-~DGtI~I 210 (1074)
...+......+..+++.|...+++....+ +.|...++............-.....+++.+.+..|+... ..+.|..
T Consensus 114 ~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~ 193 (263)
T d1npea_ 114 RVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAEC 193 (263)
T ss_dssp EEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred EEEECCCCCCCCEEEEECCCCCEEEEECCCCCCEEEEECCCCCCCEEEEEECCCCCCEEEEEECCCEEEEEECCCCEEEE
T ss_conf 77712566687279992566927995348997689996678997236553035555307995047589999289999999
Q ss_pred EECCCCCEEEEECCCCCCEEEEEEECCCCEEEEE
Q ss_conf 9889970887517998884799991699899999
Q 001462 211 WDLETFELIGSTRPEVTGVHAITFHPDGRTLFSG 244 (1074)
Q Consensus 211 WDl~tge~i~~l~~~~~~ItsIafSPDG~~LasG 244 (1074)
.++........+.... ...++++. +.+|+..
T Consensus 194 ~~~~g~~~~~v~~~~~-~P~~lav~--~~~lYwt 224 (263)
T d1npea_ 194 LNPAQPGRRKVLEGLQ-YPFAVTSY--GKNLYYT 224 (263)
T ss_dssp EETTEEEEEEEEECCC-SEEEEEEE--TTEEEEE
T ss_pred EECCCCCEEEEECCCC-CCEEEEEE--CCEEEEE
T ss_conf 9999997699988999-86899999--9999999
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.40 E-value=0.0025 Score=34.31 Aligned_cols=114 Identities=15% Similarity=0.115 Sum_probs=57.3
Q ss_pred CCEEEEEECCCEEEEEECCCCEEEEEEECCC--------CC-EEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEEEC
Q ss_conf 9999999869919999869990699980789--------98-38999937998999997898099998899907999817
Q 001462 70 EVLVLAGASTGVIKLWDLEESKMVRTLTGHK--------SN-CTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKG 140 (1074)
Q Consensus 70 g~~LatGs~DG~I~IWDl~sgk~i~tl~~h~--------~~-VtsIafSPdg~~LaSgs~DGsI~IWDi~sg~~i~~lk~ 140 (1074)
+..|++++.++.|.-.|..+|+.+..+.... .. ...+.+. +..++.++.++.++-.|..+++.+.....
T Consensus 68 ~g~vy~~t~~~~v~AlDa~TG~~lW~~~~~~~~~~~~~~~~~~rg~a~~--~~~i~~~t~~~~l~alda~tG~~~W~~~~ 145 (582)
T d1flga_ 68 DGVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIY--GDKVFFGTLDASVVALNKNTGKVVWKKKF 145 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEE--TTEEEEEETTTEEEEEESSSCCEEEEEEC
T ss_pred CCEEEEECCCCEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCEEE--CCCEEEECCCCEEEEECCCCCCEEEEECC
T ss_conf 9999996899959999689998688876889876553334446774586--78158864887499811666630211102
Q ss_pred CCCC------EEEEEECC--CCCEEEEEE-------CCCEEEEEECCCCCEEEEEEECCC
Q ss_conf 9987------48999968--999999997-------799499999899906899630488
Q 001462 141 HTRG------INTIRFTP--DGRWVVSGG-------FDNVVKVWDLTAGKLLHDFKFHEG 185 (1074)
Q Consensus 141 h~~~------VssIafSP--dG~~LvSgs-------~DGsI~IWDl~tgk~i~~l~~h~g 185 (1074)
.... ..-..+.+ .+..++..+ ..+.|.-+|..+|+.+..+....+
T Consensus 146 ~~~~~~~~~~~~p~~~~~~~~~~~~~i~g~~~~~~~~~g~v~a~d~~tG~~~W~~~~~~~ 205 (582)
T d1flga_ 146 ADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEG 205 (582)
T ss_dssp SCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTT
T ss_pred CCCCCCCEEECCCEEECCCCEEEEEEEECCCCCCCCCCCCEEEECCCCCCEEEEEECCCC
T ss_conf 477766124038667048847579999076654346546348723888867898712178
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=97.33 E-value=0.003 Score=33.79 Aligned_cols=110 Identities=18% Similarity=0.186 Sum_probs=58.1
Q ss_pred CCEEEEEECCCEEEEEECCCCEEEEEEECCCCC-----------EEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEE
Q ss_conf 999999986991999986999069998078998-----------389999379989999978980999988999079998
Q 001462 70 EVLVLAGASTGVIKLWDLEESKMVRTLTGHKSN-----------CTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTY 138 (1074)
Q Consensus 70 g~~LatGs~DG~I~IWDl~sgk~i~tl~~h~~~-----------VtsIafSPdg~~LaSgs~DGsI~IWDi~sg~~i~~l 138 (1074)
+..+++++.++.|.-.|..+|+.+..+...... ...+... +..++.+..++.|+-.|..+++.+..+
T Consensus 66 ~g~vyv~t~~~~v~AlDa~tG~~lW~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~g~l~Alda~tG~~~w~~ 143 (560)
T d1kv9a2 66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALW--GDKVYVGTLDGRLIALDAKTGKAIWSQ 143 (560)
T ss_dssp TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEE--BTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEECCCCEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEE--CCEEEEEECCCEEEEEECCCCCEEECC
T ss_conf 999999789995999968999879887798776445443224653575046--884999738987999977789577305
Q ss_pred ECCCCC-EEEEEECC--CCCEEEEEEC------CCEEEEEECCCCCEEEEEE
Q ss_conf 179987-48999968--9999999977------9949999989990689963
Q 001462 139 KGHTRG-INTIRFTP--DGRWVVSGGF------DNVVKVWDLTAGKLLHDFK 181 (1074)
Q Consensus 139 k~h~~~-VssIafSP--dG~~LvSgs~------DGsI~IWDl~tgk~i~~l~ 181 (1074)
...... ...+.-.| ....++.+.. .|.|.-+|..+|+.+..+.
T Consensus 144 ~~~~~~~~~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~ 195 (560)
T d1kv9a2 144 QTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFY 195 (560)
T ss_dssp ECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred CCCCCCCCEEEEEEEEEECCCCCCCCCCEECCCCCEEEEEECCCCEEEEEEE
T ss_conf 7667554045432004506851036531100135538999778862776641
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.20 E-value=0.0042 Score=32.84 Aligned_cols=176 Identities=9% Similarity=-0.036 Sum_probs=74.3
Q ss_pred EEEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEEE-CCCEEEEEECCCCE----EEEEEECCCCCEEEEEECCCCC
Q ss_conf 099998799933799507998947999938999999998-69919999869990----6999807899838999937998
Q 001462 39 KVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGA-STGVIKLWDLEESK----MVRTLTGHKSNCTAVEFHPFGE 113 (1074)
Q Consensus 39 tI~IWDi~t~k~l~sl~~hs~~VtsIafSpdg~~LatGs-~DG~I~IWDl~sgk----~i~tl~~h~~~VtsIafSPdg~ 113 (1074)
.|+..++........+. ....+..++|+.....|+... ..+.|...++.... ....+......+..+++.+.+.
T Consensus 11 ~I~~~~l~~~~~~~~~~-~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~ 89 (266)
T d1ijqa1 11 EVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHS 89 (266)
T ss_dssp SEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTT
T ss_pred EEEEEECCCCCCEEEEC-CCCCEEEEEEEECCCEEEEEECCCCEEEEEEECCCCCCCCEEEEEECCCCCCCEEEEEECCC
T ss_conf 18999899985266417-99855999998089999999997997999993578887614899848999854689864265
Q ss_pred EEEEE-ECCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEE--CCCEEEEEECCCCCEEEEEEECCCCEEEE
Q ss_conf 99999-7898099998899907999817998748999968999999997--79949999989990689963048875899
Q 001462 114 FFASG-CMDTNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGG--FDNVVKVWDLTAGKLLHDFKFHEGHIRSI 190 (1074)
Q Consensus 114 ~LaSg-s~DGsI~IWDi~sg~~i~~lk~h~~~VssIafSPdG~~LvSgs--~DGsI~IWDl~tgk~i~~l~~h~g~ItsL 190 (1074)
.++.+ ...+.|.+.++..................++++|...+++... ..+.|...++............-.....+
T Consensus 90 ~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~~~~~~p~gl 169 (266)
T d1ijqa1 90 NIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGI 169 (266)
T ss_dssp EEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEE
T ss_pred EEEEEECCCCEEEEEECCCCEEEEEECCCCCCCCEEEEECCCCEEEEECCCCCCCEEEECCCCCCEECCCCCCCCEEEEE
T ss_conf 28999548999985764895378887279988336999800394887126997302686368883441200453201699
Q ss_pred EECCCCCEEEEE-ECCCEEEEEECCC
Q ss_conf 975999699999-6899399998899
Q 001462 191 DFHPLEFLLATG-SADRTVKFWDLET 215 (1074)
Q Consensus 191 afSPdg~lLaTG-s~DGtI~IWDl~t 215 (1074)
++.+.+..|+.+ ...+.|...++..
T Consensus 170 ~iD~~~~~lYw~d~~~~~I~~~~~dG 195 (266)
T d1ijqa1 170 TLDLLSGRLYWVDSKLHSISSIDVNG 195 (266)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTS
T ss_pred EEECCCCEEEEECCCCCEEEEEECCC
T ss_conf 86133569999528967999998999
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=96.60 E-value=0.013 Score=29.60 Aligned_cols=60 Identities=15% Similarity=0.081 Sum_probs=30.3
Q ss_pred EEEEEECCCCEEEEEECCC-----------EEEEEECCCCCEEEEECCCCCCCCCCEE-EEEECCCCCCCEEEEEEEECC
Q ss_conf 4579945999999998799-----------2999994799324531278999998631-999969999210499989614
Q 001462 270 LGDLCINDGKLLGCSFYRN-----------SVGIWVADVSHVEPYGVGAPEPDQSICT-EVKFNPPGSHSLEKVGIIGRS 337 (1074)
Q Consensus 270 ~~~l~spDGklLatgs~DG-----------sI~IWDld~~~l~~~~l~~~~~~~~~It-sVaFSPDGs~~La~vlavG~s 337 (1074)
...+..+||+++++|+.+. .+.+||.....-..... ......-. .....+||+ +++.|..
T Consensus 292 ~~~~~~~dg~i~v~GG~~~~~~~~~~~~~~~ve~Ydp~~~~W~~~~~---~~~~R~~Hs~a~l~~dG~-----v~v~GG~ 363 (387)
T d1k3ia3 292 HTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNP---NSIVRVYHSISLLLPDGR-----VFNGGGG 363 (387)
T ss_dssp CEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCC---CSSCCCTTEEEEECTTSC-----EEEEECC
T ss_pred CEEEECCCCEEEEECCCCCCCCCCCCCEECEEEEEECCCCEEEECCC---CCCCCCCEEEEEECCCCE-----EEEEECC
T ss_conf 33566058749998884567668899470107989799991887889---997553127999988999-----9999698
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=96.50 E-value=0.015 Score=29.18 Aligned_cols=269 Identities=12% Similarity=0.057 Sum_probs=137.1
Q ss_pred CEEEEEEECCCCCEEEEEECCC-----------EEEEEECCCCCEE--EE-EECCCCCEEEEEECCCCCEEEEEECC-CE
Q ss_conf 8799999128993999997899-----------0999987999337--99-50799894799993899999999869-91
Q 001462 17 NVNCISIGKKACRFLITGGDDQ-----------KVNLWAIGKPTAL--MS-LCGLSSPVDSVAFDSAEVLVLAGAST-GV 81 (1074)
Q Consensus 17 ~VtsIafSPdg~~lLaTGs~DG-----------tI~IWDi~t~k~l--~s-l~~hs~~VtsIafSpdg~~LatGs~D-G~ 81 (1074)
.+.......++ ++++.|+.+. .+.+||..++.-. .. ...+........+.+++.+++.|+.+ ..
T Consensus 21 ~~~~a~~~~~g-kv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~ 99 (387)
T d1k3ia3 21 PAAAAIEPTSG-RVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKK 99 (387)
T ss_dssp CSEEEEETTTT-EEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTC
T ss_pred CCEEEEEEECC-EEEEEEEECCCCCCCCCCCEEEEEEEECCCCCEEECCCCCCCCCCCEEEEEEECCCCEEEEECCCCCC
T ss_conf 01789992599-99999840576667887760689999888896866677898744525689994688689863688862
Q ss_pred EEEEECCCCEEEEEEEC-CCCCEEEEEECCCCCEEEEEECC------CEEEEEECCCCEEEEEEECC-------------
Q ss_conf 99998699906999807-89983899993799899999789------80999988999079998179-------------
Q 001462 82 IKLWDLEESKMVRTLTG-HKSNCTAVEFHPFGEFFASGCMD------TNLKIWDIRKKGCIHTYKGH------------- 141 (1074)
Q Consensus 82 I~IWDl~sgk~i~tl~~-h~~~VtsIafSPdg~~LaSgs~D------GsI~IWDi~sg~~i~~lk~h------------- 141 (1074)
+.+||..+..-...-.. ....-...+..++++.++.++.+ ..+.+||..+..-...-...
T Consensus 100 ~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~ 179 (387)
T d1k3ia3 100 TSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLY 179 (387)
T ss_dssp EEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGG
T ss_pred EEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCEEEECCCCCCCCCCCEEEEECCCCCCEEECCCCCCCCCCCCCCCCEE
T ss_conf 16756755744215656642101303553178266521366333543205663488895511588764431134665136
Q ss_pred -CCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEE--EC----CC--CEEEEEE-CCCCCEEEEEECCC-----
Q ss_conf -9874899996899999999779949999989990689963--04----88--7589997-59996999996899-----
Q 001462 142 -TRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFK--FH----EG--HIRSIDF-HPLEFLLATGSADR----- 206 (1074)
Q Consensus 142 -~~~VssIafSPdG~~LvSgs~DGsI~IWDl~tgk~i~~l~--~h----~g--~ItsLaf-SPdg~lLaTGs~DG----- 206 (1074)
...-..+...+++..++.++..+.+.+++..+........ .. .. .-.++.+ ..++++++.|+...
T Consensus 180 ~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~GG~~~~~~~~ 259 (387)
T d1k3ia3 180 RSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSD 259 (387)
T ss_dssp TTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSB
T ss_pred ECCCEEEEEEECCCCEEEECCCCCCEEECCCCCCCEEECCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEEECCCCCCCC
T ss_conf 50422699970798778746867747814866671731665566766576322263788613588247887536788775
Q ss_pred ---EEEEEECCCC---C-EEEEECC--CCCCEEEEEEECCCCEEEEEECC------------CEEEEEECCCEEEECCCC
Q ss_conf ---3999988997---0-8875179--98884799991699899999799------------499999368723201026
Q 001462 207 ---TVKFWDLETF---E-LIGSTRP--EVTGVHAITFHPDGRTLFSGFDD------------NLKVYSWEPVICHDSVDM 265 (1074)
Q Consensus 207 ---tI~IWDl~tg---e-~i~~l~~--~~~~ItsIafSPDG~~LasGsd~------------~I~Iwdl~s~~~~~~i~~ 265 (1074)
...++++... . ....... ......+....++|+++++|... .+.+||.........-..
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~dg~i~v~GG~~~~~~~~~~~~~~~ve~Ydp~~~~W~~~~~~ 339 (387)
T d1k3ia3 260 ATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPN 339 (387)
T ss_dssp CCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCC
T ss_pred CCCEEECCCCCCCCCCCCCEEECCCCCCCCCCCEEEECCCCEEEEECCCCCCCCCCCCCEECEEEEEECCCCEEEECCCC
T ss_conf 21000001111135678840603665665434335660587499988845676688994701079897999918878899
Q ss_pred C--CCEE-EEEEECCCCEEEEEEC
Q ss_conf 8--7614-5799459999999987
Q 001462 266 G--WSTL-GDLCINDGKLLGCSFY 286 (1074)
Q Consensus 266 ~--~s~~-~~l~spDGklLatgs~ 286 (1074)
. .... ..+..+||++++.|+.
T Consensus 340 ~~~R~~Hs~a~l~~dG~v~v~GG~ 363 (387)
T d1k3ia3 340 SIVRVYHSISLLLPDGRVFNGGGG 363 (387)
T ss_dssp SSCCCTTEEEEECTTSCEEEEECC
T ss_pred CCCCCCEEEEEECCCCEEEEEECC
T ss_conf 975531279999889999999698
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=96.41 E-value=0.017 Score=28.84 Aligned_cols=108 Identities=9% Similarity=0.136 Sum_probs=52.8
Q ss_pred EEEECCCEEEEEEC-CCCEEEEEEECCCC-----------CEEEEEECCC----CCEEEEEECCCEEEEEECCCCEEEEE
Q ss_conf 99986991999986-99906999807899-----------8389999379----98999997898099998899907999
Q 001462 74 LAGASTGVIKLWDL-EESKMVRTLTGHKS-----------NCTAVEFHPF----GEFFASGCMDTNLKIWDIRKKGCIHT 137 (1074)
Q Consensus 74 atGs~DG~I~IWDl-~sgk~i~tl~~h~~-----------~VtsIafSPd----g~~LaSgs~DGsI~IWDi~sg~~i~~ 137 (1074)
++.+..+.+...|. .+|+.+..+..... ....+.+.++ ...++.+..|+.|+-.|..+++.+..
T Consensus 67 ~~t~~~~~v~a~d~~~tG~~~W~~~~~~~~~~~~~~~~~~~~RGv~~~~~~~~~~~~v~~~t~dg~l~Alda~tG~~~w~ 146 (596)
T d1w6sa_ 67 IHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETGETVWK 146 (596)
T ss_dssp EECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTCCEEEE
T ss_pred EEECCCCCEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCCEEEEEEECCCCEEEECCCCCCEECC
T ss_conf 95178996899957998877887038788643432135666651698327998862999980798768543656841023
Q ss_pred EECCCCCE-EEEEECC--CCCEEEEEEC------CCEEEEEECCCCCEEEEEE
Q ss_conf 81799874-8999968--9999999977------9949999989990689963
Q 001462 138 YKGHTRGI-NTIRFTP--DGRWVVSGGF------DNVVKVWDLTAGKLLHDFK 181 (1074)
Q Consensus 138 lk~h~~~V-ssIafSP--dG~~LvSgs~------DGsI~IWDl~tgk~i~~l~ 181 (1074)
+....... ..+.-.| .+..++++.. .|.|.-+|..+|+++..+.
T Consensus 147 ~~~~d~~~~~~~t~~P~v~~~~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~~ 199 (596)
T d1w6sa_ 147 VENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAY 199 (596)
T ss_dssp EECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred CCCCCCCCCCCCCCCCCEECCEEEEEECCCCCCCCCCEEEEECCCCCEEEEEE
T ss_conf 10146555642245881777758993023444335732898878885778865
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=96.28 E-value=0.02 Score=28.36 Aligned_cols=109 Identities=16% Similarity=0.079 Sum_probs=56.3
Q ss_pred CEEEEEECCCEEEEEECCCCEEEEEEECCCC----------C-EEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEEE
Q ss_conf 9999998699199998699906999807899----------8-3899993799899999789809999889990799981
Q 001462 71 VLVLAGASTGVIKLWDLEESKMVRTLTGHKS----------N-CTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYK 139 (1074)
Q Consensus 71 ~~LatGs~DG~I~IWDl~sgk~i~tl~~h~~----------~-VtsIafSPdg~~LaSgs~DGsI~IWDi~sg~~i~~lk 139 (1074)
..+++++.++.|.-+|..+|+.+..+..... . -..+.+. +..++.+..++.++-.|..+++.+....
T Consensus 78 g~vyv~t~~~~v~AlDa~TG~~~W~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~v~~~t~~g~l~alda~tG~~~W~~~ 155 (573)
T d1kb0a2 78 GIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALW--KGKVYVGAWDGRLIALDAATGKEVWHQN 155 (573)
T ss_dssp TEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred CEEEEECCCCEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEE--CCCEEEEECCCCEEEECCCCCCCEECCC
T ss_conf 99999789996999958999858786798876533334566566652387--8818997336540666162430010146
Q ss_pred CCCCCE--EEEEECC--CCCEEEEEEC------CCEEEEEECCCCCEEEEEE
Q ss_conf 799874--8999968--9999999977------9949999989990689963
Q 001462 140 GHTRGI--NTIRFTP--DGRWVVSGGF------DNVVKVWDLTAGKLLHDFK 181 (1074)
Q Consensus 140 ~h~~~V--ssIafSP--dG~~LvSgs~------DGsI~IWDl~tgk~i~~l~ 181 (1074)
...... ..+.-.| .+..++++.. .|.|..+|..+|+.+..+.
T Consensus 156 ~~~~~~~~~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~ 207 (573)
T d1kb0a2 156 TFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWF 207 (573)
T ss_dssp TTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred CCCCCCCEEEEECCEEEEECCEEEEECCCCCCCCCEEEEEECCCCCCEEEEE
T ss_conf 7568765078601027970627992134455432218998568865102553
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.84 E-value=0.031 Score=27.01 Aligned_cols=255 Identities=12% Similarity=0.144 Sum_probs=143.6
Q ss_pred CEEEEEE---CCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEEECCCCCEEE
Q ss_conf 3999997---8990999987999337995079989479999389999999986991999986999069998078998389
Q 001462 29 RFLITGG---DDQKVNLWAIGKPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTA 105 (1074)
Q Consensus 29 ~lLaTGs---~DGtI~IWDi~t~k~l~sl~~hs~~VtsIafSpdg~~LatGs~DG~I~IWDl~sgk~i~tl~~h~~~Vts 105 (1074)
+|+++-. ....|.|.|+..+.....-.- ...+.-.+|..+.|+.-+ ...+.++|++..+.++.+. ..++|.-
T Consensus 33 kyicVRe~~~~~~~VvIidl~n~~~~~Rrpi---~AdsAIMhP~~~IiALra-g~~LQiFnletK~klks~~-~~e~Vvf 107 (327)
T d1utca2 33 KFICIREKVGEQAQVVIIDMNDPSNPIRRPI---SADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHT-MTDDVTF 107 (327)
T ss_dssp SEEEEEEEETTEEEEEEEETTSTTSCEEEEC---CCSEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEE-CSSCCCE
T ss_pred CEEEEEECCCCCCEEEEEECCCCCCCEECCC---CHHHHHCCCCCCEEEEEC-CCEEEEEEHHHHHHHCEEE-CCCCCEE
T ss_conf 7799983258984399998899876331443---616653088875799962-8868998446822111587-6888579
Q ss_pred EEECCCCCEEEEEECCCEEEEEECCCC-EEEEEEECCC----CCEEEEEECCCCCEEEEEE-------CCCEEEEEECCC
Q ss_conf 999379989999978980999988999-0799981799----8748999968999999997-------799499999899
Q 001462 106 VEFHPFGEFFASGCMDTNLKIWDIRKK-GCIHTYKGHT----RGINTIRFTPDGRWVVSGG-------FDNVVKVWDLTA 173 (1074)
Q Consensus 106 IafSPdg~~LaSgs~DGsI~IWDi~sg-~~i~~lk~h~----~~VssIafSPdG~~LvSgs-------~DGsI~IWDl~t 173 (1074)
-.|.. .+.|+..+ +..|+-|++... .+.+.+..|. ..|.....+++.+|++..+ -.|.+.+|...
T Consensus 108 WkWis-~~~L~lVT-~taVYHW~~~g~s~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~e- 184 (327)
T d1utca2 108 WKWIS-LNTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVD- 184 (327)
T ss_dssp EEESS-SSEEEEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETT-
T ss_pred EEECC-CCEEEEEC-CCCEEEECCCCCCCCHHHHHHCCCCCCCEEEEEEECCCCCEEEEEEEECCCCCEEEEEEEEEEC-
T ss_conf 99447-98899991-8816997356999852662321012486389989899998899995713788305888899802-
Q ss_pred CCEEEEEEECCCCEEEEEECCCC---CEEEEEE---CCCEEEEEECCCCC---------EEEEECCC---CCCEEEEEEE
Q ss_conf 90689963048875899975999---6999996---89939999889970---------88751799---8884799991
Q 001462 174 GKLLHDFKFHEGHIRSIDFHPLE---FLLATGS---ADRTVKFWDLETFE---------LIGSTRPE---VTGVHAITFH 235 (1074)
Q Consensus 174 gk~i~~l~~h~g~ItsLafSPdg---~lLaTGs---~DGtI~IWDl~tge---------~i~~l~~~---~~~ItsIafS 235 (1074)
.+..+.+++|.+....+.+..+. .+++.+. ..+.+.+.++.... ....+.+. .+-..++..+
T Consensus 185 r~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs 264 (327)
T d1utca2 185 RKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQIS 264 (327)
T ss_dssp TTEEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEE
T ss_pred CCCCCCCCCEEEEEEEEECCCCCCCCEEEEEEECCCCCCEEEEEECCCCCCCCCCCCCEEEEEECCCCCCCCCEEEEEEE
T ss_conf 28675232034656888707998873099999878987479999868875578887532688777963468847799964
Q ss_pred CCCCEEEE-EECCCEEEEEECCCEEEECCCCCCCEEEEE-EECCCCEEEEEECCCEEE
Q ss_conf 69989999-979949999936872320102687614579-945999999998799299
Q 001462 236 PDGRTLFS-GFDDNLKVYSWEPVICHDSVDMGWSTLGDL-CINDGKLLGCSFYRNSVG 291 (1074)
Q Consensus 236 PDG~~Las-Gsd~~I~Iwdl~s~~~~~~i~~~~s~~~~l-~spDGklLatgs~DGsI~ 291 (1074)
+.-..++. .-.|.+++||++++.+...-......+-.. ...+..-+++...+|.|.
T Consensus 265 ~kygiiyviTK~G~i~lyDleTgt~i~~nRIs~~~iF~~a~~~~~~Gi~~VNr~GqVl 322 (327)
T d1utca2 265 EKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVL 322 (327)
T ss_dssp TTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTSEEE
T ss_pred CCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEECCCCCCCEEEEECCCCEEE
T ss_conf 3379999996675899997566628999404788448962678886089987897699
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.21 E-value=0.051 Score=25.57 Aligned_cols=224 Identities=8% Similarity=-0.038 Sum_probs=124.1
Q ss_pred EEEEEECCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEE-CCCEEEEEECCCCE----EEEEEECCCCCEE
Q ss_conf 999998699199998699906999807899838999937998999997-89809999889990----7999817998748
Q 001462 72 LVLAGASTGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGC-MDTNLKIWDIRKKG----CIHTYKGHTRGIN 146 (1074)
Q Consensus 72 ~LatGs~DG~I~IWDl~sgk~i~tl~~h~~~VtsIafSPdg~~LaSgs-~DGsI~IWDi~sg~----~i~~lk~h~~~Vs 146 (1074)
+|+.+. ...|+..++........+. ....+..+.|++..+.++-.. ..+.|.-.++.... ....+......+.
T Consensus 3 fLl~s~-~~~I~~~~l~~~~~~~~~~-~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~ 80 (266)
T d1ijqa1 3 YLFFTN-RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 80 (266)
T ss_dssp EEEEEC-BSSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCC
T ss_pred EEEEEC-CCEEEEEECCCCCCEEEEC-CCCCEEEEEEEECCCEEEEEECCCCEEEEEEECCCCCCCCEEEEEECCCCCCC
T ss_conf 999978-7718999899985266417-99855999998089999999997997999993578887614899848999854
Q ss_pred EEEECCCCCEEEEE-ECCCEEEEEECCCCCEEEEEEECCCCEEEEEECCCCCEEEEEE--CCCEEEEEECCCCCEEEEEC
Q ss_conf 99996899999999-7799499999899906899630488758999759996999996--89939999889970887517
Q 001462 147 TIRFTPDGRWVVSG-GFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGS--ADRTVKFWDLETFELIGSTR 223 (1074)
Q Consensus 147 sIafSPdG~~LvSg-s~DGsI~IWDl~tgk~i~~l~~h~g~ItsLafSPdg~lLaTGs--~DGtI~IWDl~tge~i~~l~ 223 (1074)
.+++.+.+..|+.. ...+.|.+.++........+.........++++|...+|+... ..+.|...++..........
T Consensus 81 glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~ 160 (266)
T d1ijqa1 81 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT 160 (266)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEEC
T ss_pred EEEEEECCCEEEEEECCCCEEEEEECCCCEEEEEECCCCCCCCEEEEECCCCEEEEECCCCCCCEEEECCCCCCEECCCC
T ss_conf 68986426528999548999985764895378887279988336999800394887126997302686368883441200
Q ss_pred CCCCCEEEEEEECCCCEEEEEE--CCCEEEEEECCCEEEECCCCC---CCEEEEEEECCCCEEEEEECCCEEEEEECCCC
Q ss_conf 9988847999916998999997--994999993687232010268---76145799459999999987992999994799
Q 001462 224 PEVTGVHAITFHPDGRTLFSGF--DDNLKVYSWEPVICHDSVDMG---WSTLGDLCINDGKLLGCSFYRNSVGIWVADVS 298 (1074)
Q Consensus 224 ~~~~~ItsIafSPDG~~LasGs--d~~I~Iwdl~s~~~~~~i~~~---~s~~~~l~spDGklLatgs~DGsI~IWDld~~ 298 (1074)
........+++++.+..|+... .+.|...+++........... ..+...... ++.++.+-..++.|...+...+
T Consensus 161 ~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~-~~~ly~td~~~~~I~~~~~~~g 239 (266)
T d1ijqa1 161 ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTG 239 (266)
T ss_dssp SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTC
T ss_pred CCCCEEEEEEEECCCCEEEEECCCCCEEEEEECCCCCEEEEEECCCCCCCCEEEEEE-CCEEEEEECCCCEEEEEECCCC
T ss_conf 453201699861335699995289679999989999779999389855664799998-9999999899996999999899
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.94 E-value=0.061 Score=25.06 Aligned_cols=228 Identities=8% Similarity=0.070 Sum_probs=137.6
Q ss_pred CCEEEEEE---CCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEEECCCCCEE
Q ss_conf 99999998---699199998699906999807899838999937998999997898099998899907999817998748
Q 001462 70 EVLVLAGA---STGVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYKGHTRGIN 146 (1074)
Q Consensus 70 g~~LatGs---~DG~I~IWDl~sgk~i~tl~~h~~~VtsIafSPdg~~LaSgs~DGsI~IWDi~sg~~i~~lk~h~~~Vs 146 (1074)
++++++-- ....+.+.|+.+......-.- ...+...+|..+.++.-+ ...+.++|+++...++.+. ....|.
T Consensus 32 DkyicVRe~~~~~~~VvIidl~n~~~~~Rrpi---~AdsAIMhP~~~IiALra-g~~LQiFnletK~klks~~-~~e~Vv 106 (327)
T d1utca2 32 DKFICIREKVGEQAQVVIIDMNDPSNPIRRPI---SADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHT-MTDDVT 106 (327)
T ss_dssp SSEEEEEEEETTEEEEEEEETTSTTSCEEEEC---CCSEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEE-CSSCCC
T ss_pred CCEEEEEECCCCCCEEEEEECCCCCCCEECCC---CHHHHHCCCCCCEEEEEC-CCEEEEEEHHHHHHHCEEE-CCCCCE
T ss_conf 87799983258984399998899876331443---616653088875799962-8868998446822111587-688857
Q ss_pred EEEECCCCCEEEEEECCCEEEEEECCCC-CEEEEEEECC----CCEEEEEECCCCCEEEEEEC-------CCEEEEEECC
Q ss_conf 9999689999999977994999998999-0689963048----87589997599969999968-------9939999889
Q 001462 147 TIRFTPDGRWVVSGGFDNVVKVWDLTAG-KLLHDFKFHE----GHIRSIDFHPLEFLLATGSA-------DRTVKFWDLE 214 (1074)
Q Consensus 147 sIafSPdG~~LvSgs~DGsI~IWDl~tg-k~i~~l~~h~----g~ItsLafSPdg~lLaTGs~-------DGtI~IWDl~ 214 (1074)
--.|-.+. .|+... +..|+-|++... .+.+.|..|. ..|.....+++.++++..+- .|.+.+|+.+
T Consensus 107 fWkWis~~-~L~lVT-~taVYHW~~~g~s~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~e 184 (327)
T d1utca2 107 FWKWISLN-TVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVD 184 (327)
T ss_dssp EEEESSSS-EEEEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETT
T ss_pred EEEECCCC-EEEEEC-CCCEEEECCCCCCCCHHHHHHCCCCCCCEEEEEEECCCCCEEEEEEEECCCCCEEEEEEEEEEC
T ss_conf 99944798-899991-8816997356999852662321012486389989899998899995713788305888899802
Q ss_pred CCCEEEEECCCCCCEEEEEEECCC---CEEEEEEC----CCEEEEEECCCEE------EECC-------CCCCCEEEEEE
Q ss_conf 970887517998884799991699---89999979----9499999368723------2010-------26876145799
Q 001462 215 TFELIGSTRPEVTGVHAITFHPDG---RTLFSGFD----DNLKVYSWEPVIC------HDSV-------DMGWSTLGDLC 274 (1074)
Q Consensus 215 tge~i~~l~~~~~~ItsIafSPDG---~~LasGsd----~~I~Iwdl~s~~~------~~~i-------~~~~s~~~~l~ 274 (1074)
.. .-..+.+|.+....+.+..+. ..++.+.. +.+.+.++..... .... ....-++....
T Consensus 185 r~-~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqv 263 (327)
T d1utca2 185 RK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQI 263 (327)
T ss_dssp TT-EEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEE
T ss_pred CC-CCCCCCCEEEEEEEEECCCCCCCCEEEEEEECCCCCCEEEEEECCCCCCCCCCCCCEEEEEECCCCCCCCCEEEEEE
T ss_conf 28-67523203465688870799887309999987898747999986887557888753268877796346884779996
Q ss_pred ECCCCEEEEEECCCEEEEEECCCCCEEEEEC
Q ss_conf 4599999999879929999947993245312
Q 001462 275 INDGKLLGCSFYRNSVGIWVADVSHVEPYGV 305 (1074)
Q Consensus 275 spDGklLatgs~DGsI~IWDld~~~l~~~~l 305 (1074)
+..-.++..-+.-|.|++||+.++.......
T Consensus 264 s~kygiiyviTK~G~i~lyDleTgt~i~~nR 294 (327)
T d1utca2 264 SEKHDVVFLITKYGYIHLYDLETGTCIYMNR 294 (327)
T ss_dssp ETTTTEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred ECCCCEEEEEECCCEEEEEECCCCCEEEEEE
T ss_conf 4337999999667589999756662899940
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=94.35 E-value=0.083 Score=24.16 Aligned_cols=96 Identities=13% Similarity=0.168 Sum_probs=39.2
Q ss_pred EEEECCCCCEEEEEEC-C----CEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECC----------------
Q ss_conf 9999379989999978-9----809999889990799981799874899996899999999779----------------
Q 001462 105 AVEFHPFGEFFASGCM-D----TNLKIWDIRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFD---------------- 163 (1074)
Q Consensus 105 sIafSPdg~~LaSgs~-D----GsI~IWDi~sg~~i~~lk~h~~~VssIafSPdG~~LvSgs~D---------------- 163 (1074)
.++++|++++++.+-. + ..++++|+.+++.+.... .......++|.+++..|+....+
T Consensus 129 ~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i-~~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~~~~ 207 (430)
T d1qfma1 129 GYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVL-ERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLH 207 (430)
T ss_dssp EEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEE-EEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCC
T ss_pred CEEECCCCCEEEEEECCCCCCHHEEEEECCCCCEECCCCC-CCCCCCCEEECCCCCEEEEEEECCCCCCCCCCCCCCCCC
T ss_conf 2585378987999955666721046774167640314422-243236417857998999997626667654433345786
Q ss_pred CEEEEEECCCCCE--EEEEEECC--CCEEEEEECCCCCEEEE
Q ss_conf 9499999899906--89963048--87589997599969999
Q 001462 164 NVVKVWDLTAGKL--LHDFKFHE--GHIRSIDFHPLEFLLAT 201 (1074)
Q Consensus 164 GsI~IWDl~tgk~--i~~l~~h~--g~ItsLafSPdg~lLaT 201 (1074)
..+..|.+.+... ...+.... ..+..+..+.++.+++.
T Consensus 208 ~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i 249 (430)
T d1qfma1 208 QKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLL 249 (430)
T ss_dssp CEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEE
T ss_pred CEEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCCCEEEE
T ss_conf 338999889886531002232357725775302687624568
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=93.22 E-value=0.13 Score=22.83 Aligned_cols=64 Identities=9% Similarity=-0.005 Sum_probs=26.0
Q ss_pred EEEEEECCCEEEEEECCCCCEEEEEECCC--------CC-EEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEE
Q ss_conf 99999789909999879993379950799--------89-47999938999999998699199998699906999
Q 001462 30 FLITGGDDQKVNLWAIGKPTALMSLCGLS--------SP-VDSVAFDSAEVLVLAGASTGVIKLWDLEESKMVRT 95 (1074)
Q Consensus 30 lLaTGs~DGtI~IWDi~t~k~l~sl~~hs--------~~-VtsIafSpdg~~LatGs~DG~I~IWDl~sgk~i~t 95 (1074)
.+++++.++.|+-.|..+++.+..+.... .. -..+++. +..++.++.++.+...|..+++.+..
T Consensus 70 ~vy~~t~~~~v~AlDa~TG~~lW~~~~~~~~~~~~~~~~~~rg~a~~--~~~i~~~t~~~~l~alda~tG~~~W~ 142 (582)
T d1flga_ 70 VIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIY--GDKVFFGTLDASVVALNKNTGKVVWK 142 (582)
T ss_dssp EEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEE--TTEEEEEETTTEEEEEESSSCCEEEE
T ss_pred EEEEECCCCEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCEEE--CCCEEEECCCCEEEEECCCCCCEEEE
T ss_conf 99996899959999689998688876889876553334446774586--78158864887499811666630211
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=92.82 E-value=0.15 Score=22.45 Aligned_cols=113 Identities=15% Similarity=0.133 Sum_probs=67.4
Q ss_pred CCEEEEEECCCCCEEEEEEC-C----CEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECC------------
Q ss_conf 89479999389999999986-9----919999869990699980789983899993799899999789------------
Q 001462 59 SPVDSVAFDSAEVLVLAGAS-T----GVIKLWDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMD------------ 121 (1074)
Q Consensus 59 ~~VtsIafSpdg~~LatGs~-D----G~I~IWDl~sgk~i~tl~~h~~~VtsIafSPdg~~LaSgs~D------------ 121 (1074)
-.+...+++|++++++.+-. + ..|+++|+.+++.+..... ......+.|.++++.|+....+
T Consensus 125 ~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~-~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~ 203 (430)
T d1qfma1 125 VALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLE-RVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETS 203 (430)
T ss_dssp EEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEE-EECSCCEEECTTSSEEEEEECCCCSSCCSSSCCC
T ss_pred CEECCEEECCCCCEEEEEECCCCCCHHEEEEECCCCCEECCCCCC-CCCCCCEEECCCCCEEEEEEECCCCCCCCCCCCC
T ss_conf 133425853789879999556667210467741676403144222-4323641785799899999762666765443334
Q ss_pred ----CEEEEEECCCCE--EEEEEECCC--CCEEEEEECCCCCEEEEEEC---CC--EEEEEECC
Q ss_conf ----809999889990--799981799--87489999689999999977---99--49999989
Q 001462 122 ----TNLKIWDIRKKG--CIHTYKGHT--RGINTIRFTPDGRWVVSGGF---DN--VVKVWDLT 172 (1074)
Q Consensus 122 ----GsI~IWDi~sg~--~i~~lk~h~--~~VssIafSPdG~~LvSgs~---DG--sI~IWDl~ 172 (1074)
..|+.|.+.+.. ....+.... ..+..+..+.++++++.... +. .+.+.++.
T Consensus 204 ~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~ 267 (430)
T d1qfma1 204 TNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQ 267 (430)
T ss_dssp CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGG
T ss_pred CCCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCCCEEEEEEECCCCCCEEEEEEECC
T ss_conf 5786338999889886531002232357725775302687624568764367764799995177
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=91.46 E-value=0.22 Score=21.40 Aligned_cols=28 Identities=25% Similarity=0.564 Sum_probs=11.0
Q ss_pred EEEEEECCCCCEEEEEE-CCCEEEEEECC
Q ss_conf 48999968999999997-79949999989
Q 001462 145 INTIRFTPDGRWVVSGG-FDNVVKVWDLT 172 (1074)
Q Consensus 145 VssIafSPdG~~LvSgs-~DGsI~IWDl~ 172 (1074)
...++++|++++|+++. ..+.|+.|++.
T Consensus 208 pNGI~~s~d~~~lyVa~t~~~~i~~y~~~ 236 (340)
T d1v04a_ 208 ANGINISPDGKYVYIAELLAHKIHVYEKH 236 (340)
T ss_dssp EEEEEECTTSSEEEEEEGGGTEEEEEEEC
T ss_pred CCEEEECCCCCEEEEEECCCCEEEEEEEC
T ss_conf 64348889999999996788939999968
|
| >d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nucleoporin domain family: Nucleoporin domain domain: Nucleoporin NUP159 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.37 E-value=0.22 Score=21.34 Aligned_cols=176 Identities=11% Similarity=0.039 Sum_probs=79.9
Q ss_pred CEEEEEECCCCCEEEEEECCCEEEEEECCC-----------CEEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEE
Q ss_conf 947999938999999998699199998699-----------906999807899838999937998999997898099998
Q 001462 60 PVDSVAFDSAEVLVLAGASTGVIKLWDLEE-----------SKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWD 128 (1074)
Q Consensus 60 ~VtsIafSpdg~~LatGs~DG~I~IWDl~s-----------gk~i~tl~~h~~~VtsIafSPdg~~LaSgs~DGsI~IWD 128 (1074)
...-++.++...++++|+.++ +.|..... ........ -..|..++|+ ++.+++.. ++.+..++
T Consensus 38 ~~~LLAVsn~~GLl~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~~~~~~--ip~v~~vafs--~d~l~v~~-~~~l~~~~ 111 (381)
T d1xipa_ 38 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKE--IPDVIFVCFH--GDQVLVST-RNALYSLD 111 (381)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEE--CTTEEEEEEE--TTEEEEEE-SSEEEEEE
T ss_pred CCCEEEEECCCCEEEEECCCE-EEEEEHHHHHHHHHCCCCCCCCEECCC--CCCEEEEEEE--CCEEEEEE-CCCEEEEE
T ss_conf 442689957778899988997-799998997878655678886234168--9986899861--89899995-89789998
Q ss_pred CCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEE-----ECCCCEEEEEECCCCCEEEEEE
Q ss_conf 89990799981799874899996899999999779949999989990689963-----0488758999759996999996
Q 001462 129 IRKKGCIHTYKGHTRGINTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFK-----FHEGHIRSIDFHPLEFLLATGS 203 (1074)
Q Consensus 129 i~sg~~i~~lk~h~~~VssIafSPdG~~LvSgs~DGsI~IWDl~tgk~i~~l~-----~h~g~ItsLafSPdg~lLaTGs 203 (1074)
...-...........++..+.+.|. .++....+|.+.++++..++...... .-.+...+++|++.+..++++.
T Consensus 112 ~~~l~~~~~~~~~~~~~~~~~~~p~--~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~ws~kgkq~v~~~ 189 (381)
T d1xipa_ 112 LEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQLAVLLKDRSFQSFAWR 189 (381)
T ss_dssp SSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEEEEESEEEEEECSSEEEEEETTSCEEEEEEE
T ss_pred EECCCCCCCCCCCCCCCCCEECCCC--EEEEEECCCCEEEEEECCCCCCCCCCCCCEEEECCCCEEEEEECCCEEEEEEC
T ss_conf 5100145446554556111021886--06999658977899941586444447752387338926999968968999818
Q ss_pred CCCEEEEEECCCCCEEEEECCCCCCEEEEEEECCCCEEEE
Q ss_conf 8993999988997088751799888479999169989999
Q 001462 204 ADRTVKFWDLETFELIGSTRPEVTGVHAITFHPDGRTLFS 243 (1074)
Q Consensus 204 ~DGtI~IWDl~tge~i~~l~~~~~~ItsIafSPDG~~Las 243 (1074)
.++.-.--++.....+.........+.++.|..+..++++
T Consensus 190 g~~~q~k~~i~~~~~~~~p~~~~~~v~sI~WL~~~~F~vv 229 (381)
T d1xipa_ 190 NGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV 229 (381)
T ss_dssp TTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred CCCEEECCCCCCCCCCCCCCCCCCCEEEEEEECCCEEEEE
T ss_conf 9820365677882015788677861668999517569999
|
| >d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nucleoporin domain family: Nucleoporin domain domain: Nucleoporin NUP159 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.80 E-value=0.25 Score=20.99 Aligned_cols=177 Identities=14% Similarity=0.075 Sum_probs=92.0
Q ss_pred CCEEEEEEECCCCCEEEEEECCCEEEEEECC-----------CCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEE
Q ss_conf 9879999912899399999789909999879-----------99337995079989479999389999999986991999
Q 001462 16 ANVNCISIGKKACRFLITGGDDQKVNLWAIG-----------KPTALMSLCGLSSPVDSVAFDSAEVLVLAGASTGVIKL 84 (1074)
Q Consensus 16 s~VtsIafSPdg~~lLaTGs~DGtI~IWDi~-----------t~k~l~sl~~hs~~VtsIafSpdg~~LatGs~DG~I~I 84 (1074)
.....+++++.. .+++.|+.++ +.+.... ......... -..|..++|+.+ .|++. .++.+..
T Consensus 37 ~~~~LLAVsn~~-GLl~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~~~~~~--ip~v~~vafs~d--~l~v~-~~~~l~~ 109 (381)
T d1xipa_ 37 ASLQNLDISNSK-SLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKE--IPDVIFVCFHGD--QVLVS-TRNALYS 109 (381)
T ss_dssp SCCBCEEEETTT-TEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEE--CTTEEEEEEETT--EEEEE-ESSEEEE
T ss_pred CCCCEEEEECCC-CEEEEECCCE-EEEEEHHHHHHHHHCCCCCCCCEECCC--CCCEEEEEEECC--EEEEE-ECCCEEE
T ss_conf 444268995777-8899988997-799998997878655678886234168--998689986189--89999-5897899
Q ss_pred EECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEEE-----CCCCCEEEEEECCCCCEEEE
Q ss_conf 9869990699980789983899993799899999789809999889990799981-----79987489999689999999
Q 001462 85 WDLEESKMVRTLTGHKSNCTAVEFHPFGEFFASGCMDTNLKIWDIRKKGCIHTYK-----GHTRGINTIRFTPDGRWVVS 159 (1074)
Q Consensus 85 WDl~sgk~i~tl~~h~~~VtsIafSPdg~~LaSgs~DGsI~IWDi~sg~~i~~lk-----~h~~~VssIafSPdG~~LvS 159 (1074)
++...-...........++..+.++|. .++....+|.+.++++..+....... .....+.+++|++.|..+++
T Consensus 110 ~~~~~l~~~~~~~~~~~~~~~~~~~p~--~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~ws~kgkq~v~ 187 (381)
T d1xipa_ 110 LDLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQLAVLLKDRSFQSFA 187 (381)
T ss_dssp EESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEEEEESEEEEEECSSEEEEEETTSCEEEEE
T ss_pred EEEECCCCCCCCCCCCCCCCCEECCCC--EEEEEECCCCEEEEEECCCCCCCCCCCCCEEEECCCCEEEEEECCCEEEEE
T ss_conf 985100145446554556111021886--069996589778999415864444477523873389269999689689998
Q ss_pred EECCCEEEE-EECCCCCEEEEEEECCCCEEEEEECCCCCEEEEE
Q ss_conf 977994999-9989990689963048875899975999699999
Q 001462 160 GGFDNVVKV-WDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATG 202 (1074)
Q Consensus 160 gs~DGsI~I-WDl~tgk~i~~l~~h~g~ItsLafSPdg~lLaTG 202 (1074)
+..+ ...+ -++.....+..-......+.++.|-.+..++++-
T Consensus 188 ~~g~-~~q~k~~i~~~~~~~~p~~~~~~v~sI~WL~~~~F~vvy 230 (381)
T d1xipa_ 188 WRNG-EMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF 230 (381)
T ss_dssp EETT-EEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred ECCC-CEEECCCCCCCCCCCCCCCCCCCEEEEEEECCCEEEEEE
T ss_conf 1898-203656778820157886778616689995175699998
|
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.79 E-value=0.3 Score=20.44 Aligned_cols=51 Identities=16% Similarity=0.176 Sum_probs=21.8
Q ss_pred EEEEEECCCEEEECCCCCCC-EEEEEEECCCCEEEEEECCC-----EEEEEECCCCC
Q ss_conf 99999368723201026876-14579945999999998799-----29999947993
Q 001462 249 LKVYSWEPVICHDSVDMGWS-TLGDLCINDGKLLGCSFYRN-----SVGIWVADVSH 299 (1074)
Q Consensus 249 I~Iwdl~s~~~~~~i~~~~s-~~~~l~spDGklLatgs~DG-----sI~IWDld~~~ 299 (1074)
...|+............... ....++..++++++.|+.++ .+.+||+....
T Consensus 213 ~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~v~~yd~~~~~ 269 (288)
T d1zgka1 213 VERYDVETETWTFVAPMKHRRSALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTDT 269 (288)
T ss_dssp EEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred EEEEEECCEEEECCCCCCCCCCCEEEEEECCEEEEEECCCCCEECCEEEEEECCCCE
T ss_conf 056641010000036766766514899999999999567999545639999799998
|
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.57 E-value=0.37 Score=19.87 Aligned_cols=11 Identities=9% Similarity=0.084 Sum_probs=5.9
Q ss_pred EEEEEECCCCC
Q ss_conf 09999879993
Q 001462 39 KVNLWAIGKPT 49 (1074)
Q Consensus 39 tI~IWDi~t~k 49 (1074)
.+.+||..+.+
T Consensus 20 ~~~~yd~~t~~ 30 (288)
T d1zgka1 20 YLEAYNPSNGT 30 (288)
T ss_dssp CEEEEETTTTE
T ss_pred EEEEEECCCCE
T ss_conf 59999899996
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=80.71 E-value=0.82 Score=17.52 Aligned_cols=26 Identities=8% Similarity=-0.052 Sum_probs=10.8
Q ss_pred CEEEEEECCCCCEEEEEECCCEEEEE
Q ss_conf 75899975999699999689939999
Q 001462 186 HIRSIDFHPLEFLLATGSADRTVKFW 211 (1074)
Q Consensus 186 ~ItsLafSPdg~lLaTGs~DGtI~IW 211 (1074)
.+-.|.+......|+.+-.+.-|+.+
T Consensus 181 q~EGCVvDde~~~LyisEE~~Giw~~ 206 (353)
T d1h6la_ 181 QTEGMAADDEYGSLYIAEEDEAIWKF 206 (353)
T ss_dssp CEEEEEEETTTTEEEEEETTTEEEEE
T ss_pred CCCEEEEECCCCCEEEECCCCCEEEE
T ss_conf 62169981788949995475523888
|