Citrus Sinensis ID: 001510

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060----

MGRRKQSRPHRSGGVTLENNNTTESESNKQKPHGSEQPEKEELADVDHPFFVEVNRTCWLLDEHLDISEIVLTDLKLREEFSGFIISEDFYQVSRYTLRLHVCHVNEFIGRIKLGHWPLLSSNDVTLEFVEKCMEEEMETCKIMLSGSFDAPDEGITGLVHLASMEFLTLRPTLGITFSEDMSSLRVRVEILKSAFDACESLLENSRKTWKKSMINVMSWLRPEVLTSEARYGVSKSMEMDVELMTRTKNDVSASQKHASFDVARFYEAIKRSKAEPMLEEDLPDLLPLLRPYQRRAAYWMVQREKGDSASSSERERSQFFSPLCMPMDFLDTYSTLFYNPFSGSLSLSPDYTSSYVFGGILADEMGLGKTVELLACIFAHRKPASDDSIFIDTAVQVTDDQKVNLRRLKRERVECICGAVSESRKYKGLWVQCDICDAWQHADCVGYSPRGKKRRSTFELKKHTRKKDMTNIVVRDGEHICQWCDELIEATDSPVATGATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFSISRWWIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQSQHETCVGYAREVIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHPQVGSSGLRSLQQSPLSMDEILMVLIGKTKIEGEEALRKLVMALNGLAGIALIEKNLSQAVSLYKEAMAVVEEHSEDFRLDPLLNIHLHHNLTEILPMVANCATELSQNEQHFPGCSEKAFKIHSIETCDENARKCQRVSREENSDFTDAEDPSGHLSDLSENGFNGDRKSDCCVSSSSFDDASLITVCENLKQKYLSGFSVKLSVAQQEFRKSYMQVCNALDDREKQYSAWWLEALHHAEGNKDFSAELIRKIEEAISGSLNKSRALRTASRTSLSQG

cccccccccccccccccccccccccccccccccccccccccccccccccEEEEEccccccccccccHHHHHHHccccccccccEEEEEcccccccEEEEEEEEEccccccccccccccccccccHHHHHHHHHHcccccEEEEEEEcccccccccccHHHHHHHHccccccccccccccccccccHHcHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccccccHHHHHccccccccHHHHHHHcccccccHHHccccccHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccEEEcccccccccccccccccccccccccccccccHHHHHHHHHHcccccccccccccccccccccHHHHHHHHccccEEEEcccccccccccccccccccccccccccccccccccccccHHHHHHHHccccccccccccccccccccHHHHHHHccccccccccEEEccHHHHHHHHHHHHHHccccccEEEEEEccccccccccccccHHHHccccEEEEcHHHHHHHHccccccccccHHHHHccccccccccccEEEEEEEEEEcccccccccHHHHHHHHHHHccccEEEEEcccccccccHHHHHHHHccccccccHHHHHHHHccccccccccHHHHHHHHHHHHHHHHccccccccccccccEEEEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHcHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHccccccccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccccccccccccccccccc

ccccccccccccEEEEEccccccccccccccccccccccccccccccccEEEEEEcccccccccccHHHHHHHcccccccccccEccHHHccccccEEEEEEEccccHcccEEcccccEEccccEEEEEEEEcccccccccEEEEEEEcccccccccEEEEHHHccEEEEccEEEEEcccccccEEEEEEEHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHccHcccccHccccccccccccccccccccccccHHHHccccHHHHHHHHccccccccccHHcHHHcHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHcccccccccccccccEEEccccccEEcccccccccccccEEcccccccHHHHHHHHHHHccccccccccccccccccccccccccccccccHHHHHcccccccccccccEEEEEccccccccccccccHHccccHHHHHHHHHccccccccHcccccccccHHHHHHHHHcccccccccEEEEEcHHHHHHHHHHHHHHccccccEEEEEEccHHHHHHHHcccccHHHccccEEEEEHHHHHHHccccccccccccccccccccccccccHHHHEHEEEEEEHHHHHcccHHHHHHHHHHHHHHccEEEEcccHHHccHHHHHHHHHHHcccccccHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHcccccccccccccccccccHcHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHcccHcccccccccccEEEcccccccHHHHHHHHcccccccccccccccccccccccccccccccccccccccHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHccccHHHHHHHHHHHHccccccccccHHHHHHHHccc

mgrrkqsrphrsggvtlennnttesesnkqkphgseqpekeeladvdhpfFVEVNRTCWLLDEHLDISEIVLTDLKLREEFsgfiisedfyQVSRYTLRLHVCHVNEFIGriklghwpllssndvTLEFVEKCMEEEMETCKIMlsgsfdapdegitGLVHLASMEfltlrptlgitfsedmsSLRVRVEILKSAFDACESLLENSRKTWKKSMINVMSWLRPEVLTSEARYGVSKSMEMDVELMTRTKNdvsasqkhasfDVARFYEAIKrskaepmleedlpdllpllrpyQRRAAYWMVQRekgdsassserersqffsplcmpmdfldtystlfynpfsgslslspdytssyvfggilademglGKTVELLACIFAhrkpasddsifidtAVQVTDDQKVNLRRLKRERVECICGAvsesrkykglwvqcdicdawqhadcvgysprgkkrrstfelkkhtrkkdmtnivVRDGEHICQWCDELieatdspvatgatlivcpapilaqwdaeitrhtrpgslktciyegarnsslsdtsiMDISELVGADIVLTTYDVLKedlshdsdrhegdRRFMRFqkrypviptlLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRwcitgtpiqRKLDDLYGLLRFlksspfsisRWWIEVirdpyengdvgamEFTHKFFKEIMCrsskvhvsdelqlppqeecvswltfspieehfyqsQHETCVGYAREVIQRLKDNilkrnvpghassdalynpIITHAEAAKLLNSLLKLRqacchpqvgssglrslqqsplsMDEILMVLIGKTKIEGEEALRKLVMALNGLAGIALIEKNLSQAVSLYKEAMAVVEEhsedfrldpllnihlhhnLTEILPMVANCATelsqneqhfpgcsekafkIHSIETCDENARKCQrvsreensdftdaedpsghlsdlsengfngdrksdccvssssfddasLITVCENLKQKYLSGFSVKLSVAQQEFRKSYMQVCNALDDREKQYSAWWLEALHHAEGNKDFSAELIRKIEEAISGSLNKSRALRTASRTSLSQG

mgrrkqsrphrsggvtlennnttesesnkqkphgseqPEKEELADVDHPFFVEVNRTCWLLDEHLDISEIVLTDLKLREEFSGFIISEDFYQVSRYTLRLHVCHVNEFIGRIKLGHWPLLSSNDVTLEFVEKCMEEEMETCKIMLSGSFDAPDEGITGLVHLASMEFLTLRPTLGITFSEDMSSLRVRVEILKSAFDACESLLENSRKTWKKSMINVMSWLRPEVLTSEARYGVSKSMEMDVELMTRTKndvsasqkhasfdvARFYEAIKRskaepmleedlpdllpLLRPYQRRAAYWMVQRekgdsassserERSQFFSPLCMPMDFLDTYSTLFYNPFSGSLSLSPDYTSSYVFGGILADEMGLGKTVELLACIFAHRKPASDDSIFIdtavqvtddqkvnlrrlkrervecicgavsesrkykglWVQCDICDAWQHADcvgysprgkkrrstfelkkhtrkkdmtnivvrDGEHICQWCDELIEATDSPVATGATLIVCPAPILAQWDAEITrhtrpgslktcIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLkedlshdsdrhegdrrfmrfqkrypviptLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLksspfsisrwWIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQSQHETCVGYAREVIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHPQVGssglrslqqsplSMDEILMVLIGKTKIEGEEALRKLVMALNGLAGIALIEKNLSQAVSLYKEAMAVVEEHSEDFRLDPLLNIHLHHNLTEILPMVANCATELSQNEQHFPGCSEKAFKIHSIETCDENARKCQRVSREENsdftdaedpsghlsdlsengfnGDRKSDCCVSSSSFDDASLITVCENLKQKYLSGFSVKLSVAQQEFRKSYMQVCNALDDREKQYSAWWLEALHHAEGNKDFSAELIRKIEEaisgslnksralrtasrtslsqg

MGRRKQSRPHRSGGVTLennnttesesnKQKPHGSEQPEKEELADVDHPFFVEVNRTCWLLDEHLDISEIVLTDLKLREEFSGFIISEDFYQVSRYTLRLHVCHVNEFIGRIKLGHWPLLSSNDVTLEFVekcmeeemetckIMLSGSFDAPDEGITGLVHLASMEFLTLRPTLGITFSEDMSSLRVRVEILKSAFDACESLLENSRKTWKKSMINVMSWLRPEVLTSEARYGVSKSMEMDVELMTRTKNDVSASQKHASFDVARFYEAIKRSKAEPMleedlpdllpllRPYQRRAAYWMVQREKGDsassserersqffsPLCMPMDFLDTYSTLFYNPFSGSLSLSPDYTSSYVFGGILADEMGLGKTVELLACIFAHRKPASDDSIFIDTAVQVTDDQKVNLRRLKRERVECICGAVSESRKYKGLWVQCDICDAWQHADCVGYSPRGKKRRSTFELKKHTRKKDMTNIVVRDGEHICQWCDELIEATDSPVATGATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFSISRWWIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQSQHETCVGYAREVIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHPQVGSSGLRSLQQSPLSMDEILMVLIGKTKIEGEEALRKLVMALNGLAGIALIEKNLSQAVSLYKEAMAVVEEHSEDFRLDPLLNIHLHHNLTEILPMVANCATELSQNEQHFPGCSEKAFKIHSIETCDENARKCQRVSREENSDFTDAEDPSGHLSDLSENGFNGDRKsdccvssssfddasLITVCENLKQKYLSGFSVKLSVAQQEFRKSYMQVCNALDDREKQYSAWWLEALHHAEGNKDFSAELIRKIEEAISGSLNKSRALRTASRTSLSQG

*********************************************VDHPFFVEVNRTCWLLDEHLDISEIVLTDLKLREEFSGFIISEDFYQVSRYTLRLHVCHVNEFIGRIKLGHWPLLSSNDVTLEFVEKCMEEEMETCKIMLSGSFDAPDEGITGLVHLASMEFLTLRPTLGITFSEDMSSLRVRVEILKSAFDACESLLENSRKTWKKSMINVMSWLRPEVLTSEARYG***************************FDVARFYEAI************LPDLLPLLRPYQRRAAYWMV*****************FFSPLCMPMDFLDTYSTLFYNPFSGSLSLSPDYTSSYVFGGILADEMGLGKTVELLACIFAHRKPASDDSIFIDTAVQVTDDQKVNLRRLKRERVECICGAVSESRKYKGLWVQCDICDAWQHADCVGYS*******************DMTNIVVRDGEHICQWCDELIEATDSPVATGATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKED************RFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFSISRWWIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQSQHETCVGYAREVIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHPQVG***********LSMDEILMVLIGKTKIEGEEALRKLVMALNGLAGIALIEKNLSQAVSLYKEAMAVVEEHSEDFRLDPLLNIHLHHNLTEILPMVANCATELSQNEQHFPGCSEKAFKIHSIETC********************************************CV***SFDDASLITVCENLKQKYLSGFSVKLSVAQQEFRKSYMQVCNALDD*******************************************************

************************************************PFFVEVNRTCWLLDEHLDISEIVLTDLKLREEFSGFIISEDFYQVSRYTLRLHVCHVNEFIGRIKLGHWPLLSSNDVTLEFVEKCMEEEMETCKIMLSGSFDAPDEGITGLVHLASMEFLTLRPTLGITFSEDMSSLRVRVEILKSAFD********************************************************************FYEA*****************LPLLRPYQRRAAYWMV*****************FFSPLCMPMDFLDTYSTLFYNPFSGSLSLSPDYT**YVFGGILADEMGLGKTVELLACIFAHRKPASDDSIFIDTAVQVTDDQKVNLRRLKRERVECICGA**********WVQCDICDAWQHADCVGYSPRGKKRRSTFELKKH****************ICQWCDELIEATDSPVATGATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSH*********************PTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFSISRWWIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQSQHETCVGYAREVIQRL**********************ITHAEAAKLLNSLLKLRQACCHPQVGS***************ILMVLIGKTKIEGEEALRKLVMALNGLAGIALIEKNLSQAVSLYKEAMAVVEEHSEDFRLDPLLNIHLHHNLTEIL**********************************************************GHLSDLSENGFNGDRKSDCC****************************************************KQYSAWWLEALHHAEGNKDF***************************T*****

************GGVTLENN*********************ELADVDHPFFVEVNRTCWLLDEHLDISEIVLTDLKLREEFSGFIISEDFYQVSRYTLRLHVCHVNEFIGRIKLGHWPLLSSNDVTLEFVEKCMEEEMETCKIMLSGSFDAPDEGITGLVHLASMEFLTLRPTLGITFSEDMSSLRVRVEILKSAFDACESLLENSRKTWKKSMINVMSWLRPEVLTSEARYGVSKSMEMDVELMTRT*********HASFDVARFYEAIKRSKAEPMLEEDLPDLLPLLRPYQRRAAYWMVQ***************QFFSPLCMPMDFLDTYSTLFYNPFSGSLSLSPDYTSSYVFGGILADEMGLGKTVELLACIFAHRKPASDDSIFIDTAVQVTDDQKVNLRRLKRERVECICGAVSESRKYKGLWVQCDICDAWQHADCVGYSPRGKKRRSTFELKKHTRKKDMTNIVVRDGEHICQWCDELIEATDSPVATGATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFSISRWWIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQSQHETCVGYAREVIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHPQVGSSGLRSLQQSPLSMDEILMVLIGKTKIEGEEALRKLVMALNGLAGIALIEKNLSQAVSLYKEAMAVVEEHSEDFRLDPLLNIHLHHNLTEILPMVANCATELSQNEQHFPGCSEKAFKIHSIETCDE*************************LSDLSENGFNGDRKSDCCVSSSSFDDASLITVCENLKQKYLSGFSVKLSVAQQEFRKSYMQVCNALDDREKQYSAWWLEALHHAEGNKDFSAELIRKIEEAISGSLNK***************

********************************************DVDHPFFVEVNRTCWLLDEHLDISEIVLTDLKLREEFSGFIISEDFYQVSRYTLRLHVCHVNEFIGRIKLGHWPLLSSNDVTLEFVEKCMEEEMETCKIMLSGSFDAPDEGITGLVHLASMEFLTLRPTLGITFSEDMSSLRVRVEILKSAFDACESLLENSRKTWKKSMINVMSWLRPEVLTSEARYGVSKSMEMDVELMTRTKNDVSASQKHASFDVARFYEAIKRSKAEPMLEEDLPDLLPLLRPYQRRAAYWMVQREKGDSASSSERERSQFFSPLCMPMDFLDTYSTLFYNPFSGSLSLSPDYTSSYVFGGILADEMGLGKTVELLACIFAHRK*******************************EC*C*AVSESRKYKGLWVQCDICDAWQHADCVGYSPRGKKRRSTFELKKHTRKKDMTNIVVRDGEHICQWCDELIEATDSPVATGATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHD*******RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFSISRWWIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQSQHETCVGYAREVIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHPQVGSSGLRSLQQSPLSMDEILMVLIGKTKIEGEEALRKLVMALNGLAGIALIEKNLSQAVSLYKEAMAVVEEHSEDFRLDPLLNIHLHHNLTEILPMVANCATELSQ***********AFKIHSIETCDENARKCQRV***********************************VSSSSFDDASLITVCENLKQKYLSGFSVKLSVAQQEFRKSYMQVCNALDDREKQYSAWWLEALHHAEGNKDFSAELIRKIEEAIS********************

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		1064	2.2.26 [Sep-21-2011]
Q7TPQ3		1674	E3 ubiquitin-protein liga	yes	no	0.393	0.250	0.391	9e-87
Q149N8		1683	E3 ubiquitin-protein liga	yes	no	0.393	0.248	0.391	1e-86
Q9FNI6		1029	Putative SWI/SNF-related	no	no	0.228	0.236	0.317	5e-35
Q9FIY7		1277	Putative SWI/SNF-related	no	no	0.242	0.202	0.313	1e-32
Q6PCN7		1003	Helicase-like transcripti	no	no	0.265	0.281	0.307	6e-31
Q9UTL9		1375	Uncharacterized ATP-depen	yes	no	0.300	0.232	0.307	7e-29
Q9FF61		881	Putative SWI/SNF-related	no	no	0.255	0.308	0.295	7e-28
Q95216		1005	Helicase-like transcripti	no	no	0.230	0.243	0.307	1e-27
Q14527		1009	Helicase-like transcripti	no	no	0.233	0.245	0.293	5e-27
Q4PGG5		1387	DNA repair protein RAD5 O	N/A	no	0.390	0.299	0.244	2e-26

>sp\|Q7TPQ3\|SHPRH_MOUSE E3 ubiquitin-protein ligase SHPRH OS=Mus musculus GN=Shprh PE=1 SV=1	Back alignment and function desciption

 Score =  322 bits (825), Expect = 9e-87,   Method: Compositional matrix adjust.
 Identities = 185/472 (39%), Positives = 250/472 (52%), Gaps = 53/472 (11%)

Query: 413  RVECICGAVSE-SRKYKGLWVQCDICDAWQHADCVGYSPRGKKRRSTFELKKHTRKKDMT 471
            R ECICG   +   K +   VQC  C  WQHA CV Y  +  K +  +            
Sbjct: 649  RFECICGEFDQIGHKPR---VQCLKCHLWQHAKCVNYEEKNLKVKPFY------------ 693

Query: 472  NIVVRDGEHICQWCDELIEATDSPVATGATLIVCPAPILAQWDAEITRHTRPGSLKTCIY 531
                      C  C   +E    PV+T ATLI+ P+ I  QW  EI RH R  SL+  +Y
Sbjct: 694  ----------CPHCLVAME----PVSTRATLIISPSSICHQWVDEINRHVRSSSLRVLVY 739

Query: 532  EGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEG--DRRFMRFQKRYPV 589
            +G +              L   DIV+ TYDVL+ +L++ +  H    D R +R QKRY  
Sbjct: 740  QGVKKHGFLQPHF-----LAEQDIVIITYDVLRSELNYVNIPHSNSEDGRRLRNQKRYMA 794

Query: 590  IPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLR 649
            IP+ L  + WWRICLDEAQMVE     A EMA RL   +RWCI+GTP+QR L+DL+GL+ 
Sbjct: 795  IPSPLVAVEWWRICLDEAQMVECPTVKAAEMAQRLSGINRWCISGTPVQRGLEDLFGLVV 854

Query: 650  FLKSSPFSISRWWIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEEC 709
            FL   P+ +  WWI ++  PY   +    +  + F  +IM RS+K  V D++Q+PPQ E 
Sbjct: 855  FLGIEPYCVKHWWIRLLYHPYCKKNP---QHLYSFIAKIMWRSAKKDVIDQIQIPPQTEE 911

Query: 710  VSWLTFSPIEEHFYQSQHETCVGYAREVIQRLKDNILKRNVPGHASSDALYNPIITHAEA 769
            + WL FSP+E HFY  QHE C   A   ++++ D  LK +              +     
Sbjct: 912  MHWLHFSPVERHFYHRQHEVCCQDAIVKLRKISDWALKLSS-------------LDRRTV 958

Query: 770  AKLLNSLLKLRQACCHPQVGSSGLRSLQQSPLSMDEILMVLIGKTKIEGEEALRKLVMAL 829
            + +L  LL+LRQACCHPQ        LQ+S ++M+E+L  L  K   E EEA R+LV AL
Sbjct: 959  SSILYPLLRLRQACCHPQAVRGEFLPLQKSTMTMEELLTSLQKKCGTECEEAHRQLVCAL 1018

Query: 830  NGLAGIALIEKNLSQAVSLYKEAMAVVEEHSEDFRLDPLLNIHLHHNLTEIL 881
            NGLAGI +I+   + A  LY+E +   EEH    + D L  +H  HNL E+L
Sbjct: 1019 NGLAGIHIIKGEYALAAELYREVLRSSEEHKGKLKTDSLQRLHATHNLMELL 1070

E3 ubiquitin-protein ligase involved in DNA repair. Upon genotoxic stress, accepts ubiquitin from the UBE2N-UBE2V2 E2 complex and transfers it to 'Lys-164' of PCNA which had been monoubiquitinated by UBE2A/B-RAD18, promoting the formation of non-canonical poly-ubiquitin chains linked through 'Lys-63'.
Mus musculus (taxid: 10090)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -

>sp\|Q149N8\|SHPRH_HUMAN E3 ubiquitin-protein ligase SHPRH OS=Homo sapiens GN=SHPRH PE=1 SV=2	Back alignment and function description

>sp\|Q9FNI6\|SM3L2_ARATH Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 2 OS=Arabidopsis thaliana GN=At5g22750 PE=2 SV=1	Back alignment and function description

>sp\|Q9FIY7\|SM3L3_ARATH Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 3 OS=Arabidopsis thaliana GN=At5g43530 PE=3 SV=1	Back alignment and function description

>sp\|Q6PCN7\|HLTF_MOUSE Helicase-like transcription factor OS=Mus musculus GN=Hltf PE=1 SV=1	Back alignment and function description

>sp\|Q9UTL9\|YIV5_SCHPO Uncharacterized ATP-dependent helicase C144.05 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC144.05 PE=3 SV=1	Back alignment and function description

>sp\|Q9FF61\|SM3L1_ARATH Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 1 OS=Arabidopsis thaliana GN=At5g05130 PE=2 SV=1	Back alignment and function description

>sp\|Q95216\|HLTF_RABIT Helicase-like transcription factor OS=Oryctolagus cuniculus GN=HLTF PE=1 SV=1	Back alignment and function description

>sp\|Q14527\|HLTF_HUMAN Helicase-like transcription factor OS=Homo sapiens GN=HLTF PE=1 SV=2	Back alignment and function description

>sp\|Q4PGG5\|RAD5_USTMA DNA repair protein RAD5 OS=Ustilago maydis (strain 521 / FGSC 9021) GN=RAD5 PE=3 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1064
224127888		1320	chromatin remodeling complex subunit [Po	0.986	0.795	0.673	0.0
359486454		1704	PREDICTED: E3 ubiquitin-protein ligase S	0.979	0.611	0.653	0.0
297736470		1717	unnamed protein product [Vitis vinifera]	0.963	0.596	0.615	0.0
449499151		1520	PREDICTED: LOW QUALITY PROTEIN: E3 ubiqu	0.992	0.694	0.599	0.0
449441236		1520	PREDICTED: E3 ubiquitin-protein ligase S	0.992	0.694	0.599	0.0
240254615		1664	RING-finger, DEAD-like helicase, PHD and	0.958	0.612	0.595	0.0
297827713		1635	SNF2 domain-containing protein [Arabidop	0.928	0.604	0.587	0.0
357490295		1764	ATP-dependent helicase, putative [Medica	0.981	0.591	0.568	0.0
356500801		1600	PREDICTED: E3 ubiquitin-protein ligase S	0.922	0.613	0.587	0.0
222637695		1663	hypothetical protein OsJ_25598 [Oryza sa	0.937	0.600	0.489	0.0

>gi\|224127888\|ref\|XP_002329202.1\| chromatin remodeling complex subunit [Populus trichocarpa] gi\|222870983\|gb\|EEF08114.1\| chromatin remodeling complex subunit [Populus trichocarpa]	Back alignment and taxonomy information

 Score = 1471 bits (3808), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 718/1066 (67%), Positives = 851/1066 (79%), Gaps = 16/1066 (1%)

Query: 1    MGRRKQSRPHRSGGVTLENNNTTES--ESNKQKPHGSEQPEKEELADVD-HPFFVEVNRT 57
            MGRRKQ+RPHRSGG+ ++NN    +  E   Q+   S   +  EL  +D  P+FVEV R 
Sbjct: 1    MGRRKQARPHRSGGLIIQNNAAASASAELKNQRKASSSDAQPTELVGIDEQPYFVEVERN 60

Query: 58   CWLLDEHLDISEIVLTDLKLREEFSGFIISEDFYQVSRYTLRLHVCHVNE-FIGRIKLGH 116
             W  + H D SE+VL  L LR+E+S F +++ FY  S+Y+LR  V +V +  + RIKLGH
Sbjct: 61   SWASNHHRDASELVLHGLNLRQEYSSFRVTDGFYHDSKYSLRFRVSNVKQSVLSRIKLGH 120

Query: 117  WPLLSSNDVTLEFVEKCM-EEEMETCKIMLSGSFDAPDEGITGLVHLASMEFLTLRPTLG 175
            WP+ SS+D++LE +EK M EE+ E   ++ SGSFD PDEGITGLVHL +MEFLTLRP LG
Sbjct: 121  WPVFSSSDISLELIEKSMVEEDREVESVIFSGSFDGPDEGITGLVHLTNMEFLTLRPVLG 180

Query: 176  ITFSEDMSSLRVRVEILKSAFDACESLLENSRKTWKKSMINVMSWLRPEVLTSEARYGVS 235
            + FSE M+ LR+RVEIL+ AFDACESLLE++R+ WKKSM+NVM+WLRPEV+TSEARY  +
Sbjct: 181  VDFSEKMTPLRMRVEILEKAFDACESLLESTRQIWKKSMMNVMAWLRPEVMTSEARYRHA 240

Query: 236  KSMEMDVELMTRTKNDVSASQKHASFDVARFYEAIKRSKAEPMLEEDLPDLLPLLRPYQR 295
            KS EM+V +     +D S S K A FDVA  YEAIK SK++PMLE+DLPDLLP LRPYQR
Sbjct: 241  KSTEMEVNMAAEIGDDTSNSGKRAQFDVAGLYEAIKPSKSDPMLEDDLPDLLPTLRPYQR 300

Query: 296  RAAYWMVQREKGDSASSSERERSQFFSPLCMPMDFLDTYSTLFYNPFSGSLSLSPDYTSS 355
            RAA+WMVQ+EKG+S  SS +ERSQFFSPLCMP+DFLDT S +FYNPFSG++S  P+++  
Sbjct: 301  RAAHWMVQQEKGES--SSVKERSQFFSPLCMPVDFLDTCSKMFYNPFSGNVSFHPEFSPP 358

Query: 356  YVFGGILADEMGLGKTVELLACIFAHRKPASDDSIFIDTAVQVTDDQKVNLRRLKRERVE 415
            YV GGILADEMGLGKTVELLACI AHRK  SDD   +    Q T +QK+NL+RLKRERVE
Sbjct: 359  YVSGGILADEMGLGKTVELLACILAHRKSTSDDGSVVAPTWQNTGNQKINLKRLKRERVE 418

Query: 416  CICGAVSESRKYKGLWVQCDICDAWQHADCVGYSPRGKKRRSTFELKKHTRKKDMTNIVV 475
            C+CGAVS+S KY+GLWVQCDICDAWQHADCVGYSPRGKK+ S  + +KH R K   + V 
Sbjct: 419  CVCGAVSDSYKYRGLWVQCDICDAWQHADCVGYSPRGKKKMSVDDEQKH-RNKTTISYVE 477

Query: 476  RDGEHICQWCDELIEATDSPVATGATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGAR 535
            RDGEH+CQ C ELIE  D+P+ATGATLIVCPAPIL QW +EITRHTRPGSLKT +YEG R
Sbjct: 478  RDGEHVCQMCSELIEVADTPIATGATLIVCPAPILPQWHSEITRHTRPGSLKTYVYEGVR 537

Query: 536  NSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLT 595
            ++SLS+T ++DI +LV ADIVLTTYDVLKEDL HDSDRH GDR  +RFQKRYPV PT+LT
Sbjct: 538  DTSLSNTFVVDIGQLVNADIVLTTYDVLKEDLLHDSDRHGGDRHILRFQKRYPVTPTILT 597

Query: 596  RIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSP 655
            RIFWWR+CLDEAQMVESNAAAATEMALRL  KHRWCITGTPIQRKLDDLYGLLRFLK+SP
Sbjct: 598  RIFWWRVCLDEAQMVESNAAAATEMALRLSTKHRWCITGTPIQRKLDDLYGLLRFLKASP 657

Query: 656  FSISRWWIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTF 715
            F++SRWWI+VIRDPYE  D  AMEFTHKFFK+IM RSSK+HV+DELQLPPQEECVSWLTF
Sbjct: 658  FNVSRWWIDVIRDPYERRDADAMEFTHKFFKQIMWRSSKIHVADELQLPPQEECVSWLTF 717

Query: 716  SPIEEHFYQSQHETCVGYAREVIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNS 775
            S IE+HFYQ QHETCV YAREVI   KD+++KR VPG  S+DA  +P+ITHAEAAKLLNS
Sbjct: 718  SAIEKHFYQMQHETCVSYAREVIGSFKDDVVKRKVPGCVSTDASTDPLITHAEAAKLLNS 777

Query: 776  LLKLRQACCHPQVGSSGLRSLQQSPLSMDEILMVLIGKTKIEGEEALRKLVMALNGLAGI 835
            LLKLRQACCHPQVGSSGLRSLQQSP++M+EILMV +GK KIEGEEALRKLV+ALN LAGI
Sbjct: 778  LLKLRQACCHPQVGSSGLRSLQQSPMTMEEILMVFVGKMKIEGEEALRKLVVALNALAGI 837

Query: 836  ALIEKNLSQAVSLYKEAMAVVEEHSEDFRLDPLLNIHLHHNLTEILPMVANCATELSQNE 895
            A++E+N  QAVSLYKEA+A+ EEH EDFRLDPLLNIH+HHNL +IL +V + +TE+  N 
Sbjct: 838  AILEQNFPQAVSLYKEALALSEEHLEDFRLDPLLNIHIHHNLADILALVMDHSTEVPSNG 897

Query: 896  QHFPGCSEKAFKIHSIETCDENARKCQRVSREENSDFT-DAEDPSGHLSDLSENGFNGDR 954
            Q   G SEKA KI+  ETCD N  K Q+ S  E+SDFT DA    G+  DLSEN   G++
Sbjct: 898  QQLHGNSEKASKINKSETCDLNDAKKQKAS-GEDSDFTIDA----GNSLDLSENCSVGNK 952

Query: 955  KSDCC--VSSSSFDDASLITVCENLKQKYLSGFSVKLSVAQQEFRKSYMQVCNALDDREK 1012
            K +    +SS+SF    L T CEN KQKYLS FS KLS AQ +F KSY QVCNA  +R+ 
Sbjct: 953  KGNNNHDMSSTSFSTQYLRTACENFKQKYLSVFSSKLSAAQLDFNKSYTQVCNAFGERKN 1012

Query: 1013 QYSAWWLEALHHAEGNKDFSAELIRKIEEAISGSLNKSRALRTASR 1058
             ++ WWL+AL+HAE NKD + ELIRKIEEA+SG+LN SR+ R ASR
Sbjct: 1013 LHTVWWLDALNHAEQNKDSTGELIRKIEEAVSGTLNNSRSSRIASR 1058

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|359486454\|ref\|XP_003633446.1\| PREDICTED: E3 ubiquitin-protein ligase SHPRH-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|297736470\|emb\|CBI25341.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|449499151\|ref\|XP_004160739.1\| PREDICTED: LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase SHPRH-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|449441236\|ref\|XP_004138388.1\| PREDICTED: E3 ubiquitin-protein ligase SHPRH-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|240254615\|ref\|NP_181609.4\| RING-finger, DEAD-like helicase, PHD and SNF2 domain-containing protein [Arabidopsis thaliana] gi\|330254782\|gb\|AEC09876.1\| RING-finger, DEAD-like helicase, PHD and SNF2 domain-containing protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|297827713\|ref\|XP_002881739.1\| SNF2 domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi\|297327578\|gb\|EFH57998.1\| SNF2 domain-containing protein [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|357490295\|ref\|XP_003615435.1\| ATP-dependent helicase, putative [Medicago truncatula] gi\|355516770\|gb\|AES98393.1\| ATP-dependent helicase, putative [Medicago truncatula]	Back alignment and taxonomy information

>gi\|356500801\|ref\|XP_003519219.1\| PREDICTED: E3 ubiquitin-protein ligase SHPRH-like [Glycine max]	Back alignment and taxonomy information

>gi\|222637695\|gb\|EEE67827.1\| hypothetical protein OsJ_25598 [Oryza sativa Japonica Group]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1064
TAIR\|locus:2064786		1664	AT2G40770 [Arabidopsis thalian	0.875	0.559	0.592	4e-296
UNIPROTKB\|E1C615		1682	SHPRH "Uncharacterized protein	0.391	0.247	0.398	2.3e-100
UNIPROTKB\|E1C5L6		1682	SHPRH "Uncharacterized protein	0.391	0.247	0.398	2.3e-100
MGI\|MGI:1917581		1674	Shprh "SNF2 histone linker PHD	0.353	0.224	0.417	1.2e-99
UNIPROTKB\|E2R8G0		1685	SHPRH "Uncharacterized protein	0.353	0.223	0.415	3.3e-99
UNIPROTKB\|Q149N8		1683	SHPRH "E3 ubiquitin-protein li	0.353	0.223	0.412	6e-98
UNIPROTKB\|E1BLB1		1688	SHPRH "Uncharacterized protein	0.353	0.222	0.422	1.6e-96
UNIPROTKB\|F1S736		1688	SHPRH "Uncharacterized protein	0.438	0.276	0.375	8.1e-94
UNIPROTKB\|K4DI94		1687	SHPRH "SNF2 histone linker PHD	0.353	0.222	0.410	6.7e-91
RGD\|1310342		1701	Shprh "SNF2 histone linker PHD	0.353	0.221	0.397	1.1e-88

TAIR\|locus:2064786 AT2G40770 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 2843 (1005.8 bits), Expect = 4.0e-296, P = 4.0e-296
 Identities = 571/963 (59%), Positives = 701/963 (72%)

Query:     1 MGRRKQSRPHRSGG-VTLXXXXXXXXXXXKQKPHGSEQPEKEELADVDHPFFVEVNRTCW 59
             MGRRKQS+P R+ G +T              +  GS     E   D+D P++V +  +  
Sbjct:     1 MGRRKQSKPQRAVGLITPTGSESDRNQLPGDEAEGSGDKNVE---DIDKPYYVNICLSSR 57

Query:    60 LLDE--HLDISEIVLTDLKLREEFSGFIISEDFYQVSR---YTLRLHVCHVNEFIGRIKL 114
             + ++  + D++E+VLT+  +RE            +V      +LR  +C+V  F+ RIKL
Sbjct:    58 VSEQQQNFDLAEVVLTNFSVRERVGSSSTFTKPIEVDHDLDCSLRFRLCNVTNFVDRIKL 117

Query:   115 GHWPLLSSNDVTLEFVXXXXXXXXXXXXIMLSGSFDAPDEGITGLVHLASMEFLTLRPTL 174
             GHWP+LSS+D+TLE V            I  S SFD P EG++GL HLAS++FLTLR   
Sbjct:   118 GHWPVLSSSDITLELVDNKVSDDEVGSVIW-SASFDGPGEGVSGLAHLASIKFLTLRLMP 176

Query:   175 GITFSEDMSSLRVRVEILKSAFDACESLLENSRKTWKKSMINVMSWLRPEVLTSEARYGV 234
             G   +E + S RVRVE+L+ AFDAC+SLLEN+R+ WKKSMI+VMSWLRPEV+TSEARYG 
Sbjct:   177 G---NEGLLSPRVRVEMLQQAFDACDSLLENTRQIWKKSMIHVMSWLRPEVMTSEARYGT 233

Query:   235 SKSMEMDVELMTRTKNDVSASQKHASFDVARFYEAIKRSKAEPMXXXXXXXXXXXXRPYQ 294
               +++ D+E    T+++   S K +SFD A FYEAIK SK + M            RPYQ
Sbjct:   234 RFNVK-DIESSVVTEDETLDSSKQSSFDAAAFYEAIKPSKTDAMLGDDIADLLPELRPYQ 292

Query:   295 RRAAYWMVQREKGDXXXXXXXXXXXXXXPLCMPMDFLDTYSTLFYNPFSGSLSLSPDYTS 354
             RRAAYWMVQRE+GD              PL + + FLD+ + +F NPFSG++SL+P+Y S
Sbjct:   293 RRAAYWMVQRERGDPITLGDKEDNQFISPLSISVGFLDSATKMFLNPFSGNISLTPEYFS 352

Query:   355 SYVFGGILADEMGLGKTVELLACIFAHRKPASDDSIFIDTAVQVTDDQKVNLRRLKRERV 414
               + GGILADEMGLGKTVELLACIF+HRKPA D+ I +     VTD     LRRLKRERV
Sbjct:   353 PRIQGGILADEMGLGKTVELLACIFSHRKPAEDE-ISVSNGSSVTDVLNAGLRRLKRERV 411

Query:   415 ECICGAVSESRKYKGLWVQCDICDAWQHADCVGYSPRGKKRRSTFEL-KKHTRKK---DM 470
             ECICGAVSES KYKG+WVQCD+CDAWQHADCVGYSP+GK ++ +  + +K ++KK   D 
Sbjct:   412 ECICGAVSESHKYKGVWVQCDLCDAWQHADCVGYSPKGKGKKDSQHIDEKASQKKSKKDA 471

Query:   471 TNIVVRDGEHICQWCDELIEATDSPVATGATLIVCPAPILAQWDAEITRHTRPGSLKTCI 530
             T I+VR+GE+ICQ C EL++ T SP++TGATLIVCPAPIL QW +EITRHTR GSL TCI
Sbjct:   472 TEIIVREGEYICQMCSELLQVTASPISTGATLIVCPAPILPQWHSEITRHTRLGSLITCI 531

Query:   531 YEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVI 590
             YEG RN+SLS+  ++DI+EL+ ADIVLTTYDVLKEDL+HD DRH+GDR  +RFQKRYPVI
Sbjct:   532 YEGVRNASLSEEPMIDITELLNADIVLTTYDVLKEDLTHDFDRHDGDRHCLRFQKRYPVI 591

Query:   591 PTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRF 650
             PT LTRIFWWRICLDEAQMVESNAAAATEMALRLY KHRWCITGTPIQRKLDDL+GLL+F
Sbjct:   592 PTPLTRIFWWRICLDEAQMVESNAAAATEMALRLYTKHRWCITGTPIQRKLDDLFGLLKF 651

Query:   651 LKSSPFSISRWWIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECV 710
             LK++PF +SRWWIEVIRDPYE  D  AMEFTHKFFK++M RSSKVHV+DELQLPPQEECV
Sbjct:   652 LKANPFDVSRWWIEVIRDPYERRDTKAMEFTHKFFKQVMWRSSKVHVADELQLPPQEECV 711

Query:   711 SWLTFSPIEEHFYQSQHETCVGYAREVIQRLKDNILKRNVPGHASSDALYNPIITHAEAA 770
             SWL FS IEEHFY  QH+TCV YAREVI+ LK +ILKR   GH SSD   NP++THAEAA
Sbjct:   712 SWLKFSAIEEHFYSRQHDTCVSYAREVIETLKRDILKR---GHTSSD---NPLVTHAEAA 765

Query:   771 KLLNSLLKLRQACCHPQVGSSGLRSLQQSPLSMDEILMVLIGKTKIEGEEALRKLVMALN 830
             KLLNSLLKLRQACCHPQVGSSGLRSLQQSP++M+EILMVL+ KT+ EGEEALR L++ALN
Sbjct:   766 KLLNSLLKLRQACCHPQVGSSGLRSLQQSPMTMEEILMVLVKKTQSEGEEALRVLIVALN 825

Query:   831 GLAGIALIEKNLSQAVSLYKEAMAVVEEHSEDFRLDPLLNIHLHHNLTEILPMVANCATE 890
             G+A IA++++  S+AVSLYKEA+++ EEH+EDFRLDPLLNIH+ HNL EILPM  +   +
Sbjct:   826 GIAAIAMLKQEFSEAVSLYKEALSITEEHAEDFRLDPLLNIHILHNLAEILPMAKSYGGK 885

Query:   891 LSQNEQHFPGCSEKAFKIHSIETCDENARKCQRVSREENSDFTDAEDPSGHLSDLSENGF 950
             LS +     G  E   KI   +     A K QR++  E+     +E      +   +NG 
Sbjct:   886 LSAS-----GRPET--KIDVKDDDHHRASKRQRINELESLTHDSSETVHQREAIAPDNGL 938

Query:   951 NGD 953
               D
Sbjct:   939 KKD 941

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0004386 "helicase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB\|E1C615 SHPRH "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|E1C5L6 SHPRH "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

MGI\|MGI:1917581 Shprh "SNF2 histone linker PHD RING helicase" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|E2R8G0 SHPRH "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|Q149N8 SHPRH "E3 ubiquitin-protein ligase SHPRH" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|E1BLB1 SHPRH "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|F1S736 SHPRH "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

UNIPROTKB\|K4DI94 SHPRH "SNF2 histone linker PHD RING helicase, isoform CRA_a" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

RGD\|1310342 Shprh "SNF2 histone linker PHD RING helicase, E3 ubiquitin protein ligase" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.6.4	0.691

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		1064
pfam00176		301	pfam00176, SNF2_N, SNF2 family N-terminal domain	8e-39
COG0553		866	COG0553, HepA, Superfamily II DNA/RNA helicases, S	1e-14
PLN03142		1033	PLN03142, PLN03142, Probable chromatin-remodeling	5e-09
smart00487		201	smart00487, DEXDc, DEAD-like helicases superfamily	3e-05
smart00249		47	smart00249, PHD, PHD zinc finger	3e-04
pfam00628		51	pfam00628, PHD, PHD-finger	6e-04
pfam00176		301	pfam00176, SNF2_N, SNF2 family N-terminal domain	0.001

>gnl\|CDD\|215770 pfam00176, SNF2_N, SNF2 family N-terminal domain	Back alignment and domain information

 Score =  146 bits (371), Expect = 8e-39
 Identities = 77/300 (25%), Positives = 118/300 (39%), Gaps = 60/300 (20%)

Query: 498 TGATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVL 557
            G TL+VCP   L  W  E  +     +L+  +Y G           M    L   D+V+
Sbjct: 48  RGPTLVVCPLSTLHNWLNEFEKW--APALRVVVYHGDGRERSKLRQSM-AKRLDTYDVVI 104

Query: 558 TTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAA 617
           TTY+VL++D    S  ++ +                     W R+ LDEA  ++++ +  
Sbjct: 105 TTYEVLRKDKKLLSLLNKVE---------------------WDRVVLDEAHRLKNSKSKL 143

Query: 618 TEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFSISRWWIEVIRDPY------- 670
            +   +L  ++R  +TGTPIQ  L++L+ LL FL+  PF   + + E    P        
Sbjct: 144 YKALKKLKTRNRLLLTGTPIQNNLEELWALLNFLRPGPFGSFKVFEEWFNIPIANTADNK 203

Query: 671 ----ENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQSQ 726
               E G  G     HK  K  + R +K  V  E  LPP+ E V +   S  +   Y+  
Sbjct: 204 NKNLEKGKEGINRL-HKLLKPFLLRRTKDDV--EKSLPPKTEHVLYCNLSDEQRKLYK-- 258

Query: 727 HETCVGYAREVIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHP 786
                       + L      R     A      N  I       LLN +++LR+ C HP
Sbjct: 259 ------------KLLTKR---RLALSFAVEGGEKNVGIAS-----LLNLIMQLRKICNHP 298

This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g. ERCC6, RAD16, RAD5), DNA recombination (e.g. RAD54), and chromatin unwinding (e.g. ISWI) as well as a variety of other proteins with little functional information (e.g. lodestar, ETL1). Length = 301

>gnl\|CDD\|223627 COG0553, HepA, Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]	Back alignment and domain information

>gnl\|CDD\|215601 PLN03142, PLN03142, Probable chromatin-remodeling complex ATPase chain; Provisional	Back alignment and domain information

>gnl\|CDD\|214692 smart00487, DEXDc, DEAD-like helicases superfamily	Back alignment and domain information

>gnl\|CDD\|214584 smart00249, PHD, PHD zinc finger	Back alignment and domain information

>gnl\|CDD\|201356 pfam00628, PHD, PHD-finger	Back alignment and domain information

>gnl\|CDD\|215770 pfam00176, SNF2_N, SNF2 family N-terminal domain	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		1064
KOG0385		971	consensus Chromatin remodeling complex WSTF-ISWI,	100.0
KOG0298		1394	consensus DEAD box-containing helicase-like transc	100.0
KOG0384		1373	consensus Chromodomain-helicase DNA-binding protei	100.0
KOG0387		923	consensus Transcription-coupled repair protein CSB	100.0
KOG0392		1549	consensus SNF2 family DNA-dependent ATPase domain-	100.0
KOG0389		941	consensus SNF2 family DNA-dependent ATPase [Chroma	100.0
PLN03142		1033	Probable chromatin-remodeling complex ATPase chain	100.0
KOG0391		1958	consensus SNF2 family DNA-dependent ATPase [Genera	100.0
KOG4439		901	consensus RNA polymerase II transcription terminat	100.0
KOG1002		791	consensus Nucleotide excision repair protein RAD16	100.0
KOG0388		1185	consensus SNF2 family DNA-dependent ATPase [Replic	100.0
KOG0386		1157	consensus Chromatin remodeling complex SWI/SNF, co	100.0
KOG0390		776	consensus DNA repair protein, SNF2 family [Replica	100.0
KOG1001		674	consensus Helicase-like transcription factor HLTF/	100.0
COG0553		866	HepA Superfamily II DNA/RNA helicases, SNF2 family	100.0
KOG1015		1567	consensus Transcription regulator XNP/ATRX, DEAD-b	100.0
PF00176		299	SNF2_N: SNF2 family N-terminal domain; InterPro: I	100.0
KOG1016		1387	consensus Predicted DNA helicase, DEAD-box superfa	100.0
KOG1000		689	consensus Chromatin remodeling protein HARP/SMARCA	100.0
PRK04914		956	ATP-dependent helicase HepA; Validated	100.0
KOG0383		696	consensus Predicted helicase [General function pre	100.0
TIGR00603		732	rad25 DNA repair helicase rad25. All proteins in t	99.9
PRK13766		773	Hef nuclease; Provisional	99.76
COG1061		442	SSL2 DNA or RNA helicases of superfamily II [Trans	99.39
PF04851		184	ResIII: Type III restriction enzyme, res subunit;	99.36
smart00487		201	DEXDc DEAD-like helicases superfamily.	99.34
cd00046		144	DEXDc DEAD-like helicases superfamily. A diverse f	99.33
PHA02558		501	uvsW UvsW helicase; Provisional	99.22
KOG1123		776	consensus RNA polymerase II transcription initiati	99.18
PRK11448		1123	hsdR type I restriction enzyme EcoKI subunit R; Pr	98.98
COG1111		542	MPH1 ERCC4-like helicases [DNA replication, recomb	98.9
cd00268		203	DEADc DEAD-box helicases. A diverse family of prot	98.8
TIGR00348		667	hsdR type I site-specific deoxyribonuclease, HsdR	98.71
TIGR00643		630	recG ATP-dependent DNA helicase RecG.	98.63
PF00270		169	DEAD: DEAD/DEAH box helicase; InterPro: IPR011545	98.59
PF13872		303	AAA_34: P-loop containing NTP hydrolase pore-1	98.54
PRK10917		681	ATP-dependent DNA helicase RecG; Provisional	98.42
COG4096		875	HsdR Type I site-specific restriction-modification	98.38
PRK01172		674	ski2-like helicase; Provisional	98.34
PRK11192		434	ATP-dependent RNA helicase SrmB; Provisional	98.34
TIGR00614		470	recQ_fam ATP-dependent DNA helicase, RecQ family.	98.33
PRK02362		737	ski2-like helicase; Provisional	98.32
PRK10689		1147	transcription-repair coupling factor; Provisional	98.29
PRK10590		456	ATP-dependent RNA helicase RhlE; Provisional	98.28
TIGR00580		926	mfd transcription-repair coupling factor (mfd). Al	98.26
PRK11776		460	ATP-dependent RNA helicase DbpA; Provisional	98.2
PRK00254		720	ski2-like helicase; Provisional	98.2
COG1204		766	Superfamily II helicase [General function predicti	98.17
PTZ00424		401	helicase 45; Provisional	98.15
TIGR01389		591	recQ ATP-dependent DNA helicase RecQ. The ATP-depe	98.14
PRK11057		607	ATP-dependent DNA helicase RecQ; Provisional	98.12
PTZ00110		545	helicase; Provisional	98.11
PLN00206		518	DEAD-box ATP-dependent RNA helicase; Provisional	98.1
KOG0354		746	consensus DEAD-box like helicase [General function	98.09
PRK04837		423	ATP-dependent RNA helicase RhlB; Provisional	98.06
PRK01297		475	ATP-dependent RNA helicase RhlB; Provisional	98.02
PRK04537		572	ATP-dependent RNA helicase RhlB; Provisional	97.96
PRK11634		629	ATP-dependent RNA helicase DeaD; Provisional	97.93
PRK13767		876	ATP-dependent helicase; Provisional	97.84
PRK09401		1176	reverse gyrase; Reviewed	97.83
COG1205		851	Distinct helicase family with a unique C-terminal	97.83
COG4889		1518	Predicted helicase [General function prediction on	97.83
PRK05580		679	primosome assembly protein PriA; Validated	97.82
COG1200		677	RecG RecG-like helicase [DNA replication, recombin	97.81
TIGR03158		357	cas3_cyano CRISPR-associated helicase, Cyano-type.	97.8
TIGR03817		742	DECH_helic helicase/secretion neighborhood putativ	97.77
KOG0331		519	consensus ATP-dependent RNA helicase [RNA processi	97.64
TIGR00595		505	priA primosomal protein N'. All proteins in this f	97.5
TIGR01587		358	cas3_core CRISPR-associated helicase Cas3. This mo	97.44
PF07652		148	Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR	97.39
PLN03137		1195	ATP-dependent DNA helicase; Q4-like; Provisional	97.39
PRK15483		986	type III restriction-modification system StyLTI en	97.2
TIGR03714		762	secA2 accessory Sec system translocase SecA2. Memb	97.17
KOG0952		1230	consensus DNA/RNA helicase MER3/SLH1, DEAD-box sup	97.07
TIGR01054		1171	rgy reverse gyrase. Generally, these gyrases are e	96.95
COG1197		1139	Mfd Transcription-repair coupling factor (superfam	96.91
TIGR02621		844	cas3_GSU0051 CRISPR-associated helicase Cas3, Anae	96.89
KOG0298		1394	consensus DEAD box-containing helicase-like transc	96.87
KOG0350		620	consensus DEAD-box ATP-dependent RNA helicase [RNA	96.84
COG1201		814	Lhr Lhr-like helicases [General function predictio	96.62
PRK14701		1638	reverse gyrase; Provisional	96.12
PRK09200		790	preprotein translocase subunit SecA; Reviewed	95.88
PRK09751		1490	putative ATP-dependent helicase Lhr; Provisional	95.79
PHA02653		675	RNA helicase NPH-II; Provisional	95.69
PF13086		236	AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV	95.47
TIGR00963		745	secA preprotein translocase, SecA subunit. The pro	95.38
COG0610		962	Type I site-specific restriction-modification syst	94.94
PRK09694		878	helicase Cas3; Provisional	94.85
TIGR01407		850	dinG_rel DnaQ family exonuclease/DinG family helic	94.81
PF11496		297	HDA2-3: Class II histone deacetylase complex subun	94.8
KOG1513		1300	consensus Nuclear helicase MOP-3/SNO (DEAD-box sup	94.39
PRK12898		656	secA preprotein translocase subunit SecA; Reviewed	94.36
KOG0330		476	consensus ATP-dependent RNA helicase [RNA processi	94.12
PRK12899		970	secA preprotein translocase subunit SecA; Reviewed	93.91
KOG0338		691	consensus ATP-dependent RNA helicase [RNA processi	93.79
TIGR01970		819	DEAH_box_HrpB ATP-dependent helicase HrpB. This mo	93.65
COG0513		513	SrmB Superfamily II DNA and RNA helicases [DNA rep	93.65
TIGR03117		636	cas_csf4 CRISPR-associated DEAD/DEAH-box helicase	93.02
PRK11664		812	ATP-dependent RNA helicase HrpB; Provisional	92.92
COG1203		733	CRISPR-associated helicase Cas3 [Defense mechanism	92.69
COG1110		1187	Reverse gyrase [DNA replication, recombination, an	92.66
COG4098		441	comFA Superfamily II DNA/RNA helicase required for	92.13
TIGR00604		705	rad3 DNA repair helicase (rad3). All proteins in t	91.96
PRK13104		896	secA preprotein translocase subunit SecA; Reviewed	91.79
KOG0947		1248	consensus Cytoplasmic exosomal RNA helicase SKI2,	91.4
COG0514		590	RecQ Superfamily II DNA helicase [DNA replication,	91.06
KOG0335		482	consensus ATP-dependent RNA helicase [RNA processi	90.78
KOG0951		1674	consensus RNA helicase BRR2, DEAD-box superfamily	90.41
PF00628		51	PHD: PHD-finger; InterPro: IPR019787 Zinc finger (	90.35
COG4581		1041	Superfamily II RNA helicase [DNA replication, reco	89.92
KOG1802		935	consensus RNA helicase nonsense mRNA reducing fact	89.76
PF02562		205	PhoH: PhoH-like protein; InterPro: IPR003714 PhoH	89.6
PRK10536		262	hypothetical protein; Provisional	88.94
PRK13103		913	secA preprotein translocase subunit SecA; Reviewed	88.78
PRK11131		1294	ATP-dependent RNA helicase HrpA; Provisional	88.76
KOG0343		758	consensus RNA Helicase [RNA processing and modific	88.72
COG3587		985	Restriction endonuclease [Defense mechanisms]	88.6
KOG1132		945	consensus Helicase of the DEAD superfamily [Replic	87.55
PRK13107		908	preprotein translocase subunit SecA; Reviewed	87.53
PRK04296		190	thymidine kinase; Provisional	87.17
KOG4284		980	consensus DEAD box protein [Transcription]	86.4
PRK12904		830	preprotein translocase subunit SecA; Reviewed	85.8
PF09848		352	DUF2075: Uncharacterized conserved protein (DUF207	85.28
PRK14873		665	primosome assembly protein PriA; Provisional	84.42
PF06733		174	DEAD_2: DEAD_2; InterPro: IPR010614 This represent	83.84
PF13604		196	AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL	82.23
TIGR01967		1283	DEAH_box_HrpA ATP-dependent helicase HrpA. This mo	80.95
PRK12326		764	preprotein translocase subunit SecA; Reviewed	80.9
TIGR00376		637	DNA helicase, putative. The gene product may repre	80.83
smart00249		47	PHD PHD zinc finger. The plant homeodomain (PHD) f	80.77

>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]	Back alignment and domain information

Probab=100.00  E-value=2.8e-80  Score=715.50  Aligned_cols=366  Identities=22%  Similarity=0.335  Sum_probs=308.9

Q ss_pred             CCcEEEEeCCchHHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCCEEEEehHHHhhhcccCCCCcccc
Q 001510          498 TGATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD  577 (1064)
Q Consensus       498 ~~~tLIV~P~SLl~QW~~Ei~k~~~~~~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~  577 (1064)
                      .||+||+||.|++.||.+||.+|+|  ++++++|+|.+..+....+  ....-..+||+||||++..++.          
T Consensus       217 ~GPfLVi~P~StL~NW~~Ef~rf~P--~l~~~~~~Gdk~eR~~~~r--~~~~~~~fdV~iTsYEi~i~dk----------  282 (971)
T KOG0385|consen  217 PGPFLVIAPKSTLDNWMNEFKRFTP--SLNVVVYHGDKEERAALRR--DIMLPGRFDVCITSYEIAIKDK----------  282 (971)
T ss_pred             CCCeEEEeeHhhHHHHHHHHHHhCC--CcceEEEeCCHHHHHHHHH--HhhccCCCceEeehHHHHHhhH----------
Confidence            4899999999999999999999998  9999999999876532211  2222348999999999999874          


Q ss_pred             hhhhhhcccCCCcchhhcccccceEEeccccccCChHHHHHHHHHHhccCeEEEEeccCCCCChhhhHhhhhccCCCCCC
Q 001510          578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFS  657 (1064)
Q Consensus       578 r~~~r~~kry~~~~s~L~~i~w~rVIlDEAH~IKN~~Sk~~kal~~L~a~~RwlLTGTPiqN~l~DL~sLL~FL~p~~f~  657 (1064)
                                    +.|.++.|.++|+||||+|||.+|.+++.++.+.+.+|++|||||+||+|.|||+||+||.|+.|+
T Consensus       283 --------------~~lk~~~W~ylvIDEaHRiKN~~s~L~~~lr~f~~~nrLLlTGTPLQNNL~ELWaLLnFllPdiF~  348 (971)
T KOG0385|consen  283 --------------SFLKKFNWRYLVIDEAHRIKNEKSKLSKILREFKTDNRLLLTGTPLQNNLHELWALLNFLLPDIFN  348 (971)
T ss_pred             --------------HHHhcCCceEEEechhhhhcchhhHHHHHHHHhcccceeEeeCCcccccHHHHHHHHHhhchhhcc
Confidence                          579999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccchhhhhhcCCCCCCChhhHHHHHHHHhhhheeccccccccCCCCCCCeEEEEEecCCHHHHHHHHHHHHHHHHHHHHH
Q 001510          658 ISRWWIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQSQHETCVGYAREV  737 (1064)
Q Consensus       658 ~~~~F~~~~~~pi~~~~~~~~~~L~~lL~~~mLRRtK~dV~~el~LPpk~e~vv~v~lS~~Qr~lY~~~~~~~~~~a~~~  737 (1064)
                      +...|..+|......++.+.+.+|+.+++||+|||.|.+|...  ||||++.+++|.||..|+++|..++.+-....   
T Consensus       349 ~~e~F~swF~~~~~~~~~e~v~~Lh~vL~pFlLRR~K~dVe~s--LppKkE~~iyvgms~mQkk~Y~~iL~kdl~~~---  423 (971)
T KOG0385|consen  349 SAEDFDSWFDFTNCEGDQELVSRLHKVLRPFLLRRIKSDVEKS--LPPKKELIIYVGMSSMQKKWYKAILMKDLDAL---  423 (971)
T ss_pred             CHHHHHHHHcccccccCHHHHHHHHhhhhHHHHHHHHHhHhhc--CCCcceeeEeccchHHHHHHHHHHHHhcchhh---
Confidence            9999999998877778888999999999999999999999655  99999999999999999999999865422111   


Q ss_pred             HHHHHHHHhhccCCCCCCCCCccCcccchhhHHHHHHHHHHHHHHcCCCCCCCcccccccCCCCCHHH----------HH
Q 001510          738 IQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHPQVGSSGLRSLQQSPLSMDE----------IL  807 (1064)
Q Consensus       738 ~~~~~~~~~~r~~~g~~~~~~~~~~~~~~~~~~~iL~~L~rLRQiC~HP~L~~~~~~~l~~~~~t~ee----------lL  807 (1064)
                              +           +.     .......+++.+|+||+|||||+|+.+..   ++.+.+.++          +|
T Consensus       424 --------n-----------~~-----~~~~k~kL~NI~mQLRKccnHPYLF~g~e---Pg~pyttdehLv~nSGKm~vL  476 (971)
T KOG0385|consen  424 --------N-----------GE-----GKGEKTKLQNIMMQLRKCCNHPYLFDGAE---PGPPYTTDEHLVTNSGKMLVL  476 (971)
T ss_pred             --------c-----------cc-----ccchhhHHHHHHHHHHHhcCCccccCCCC---CCCCCCcchHHHhcCcceehH
Confidence                    0           00     01135789999999999999999988732   224444443          67


Q ss_pred             HHHHHHHHHhhhhhcchHHHHHhHHHHHHHHHHhhhhhHHHHHHHHH-----HHHHHHhhccCCCCcC---e------eE
Q 001510          808 MVLIGKTKIEGEEALRKLVMALNGLAGIALIEKNLSQAVSLYKEAMA-----VVEEHSEDFRLDPLLN---I------HL  873 (1064)
Q Consensus       808 ~~Ll~~~~~e~~e~lrkvlifsq~la~L~iIe~~l~~a~~~y~~~l~-----~~~e~~~~f~~D~~~~---l------h~  873 (1064)
                      +.|+.+++.+|    |+||||||++.|||||+++......-|-++.+     .+.+.++.|+.++.-.   +      ++
T Consensus       477 DkLL~~Lk~~G----hRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRAGGL  552 (971)
T KOG0385|consen  477 DKLLPKLKEQG----HRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRAGGL  552 (971)
T ss_pred             HHHHHHHHhCC----CeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEecccccc
Confidence            77777777666    99999999999999999987766555544433     5667788898877322   2      56


Q ss_pred             EeccC----------ccCcchhhhhhh-hhccCCCCceEEEEcccCCccccchhhHhhhhhcccc
Q 001510          874 HHNLT----------EILPMVANCATE-LSQNEQHFPGCSEKAFKIHSIETCDENARKCQRVSRE  927 (1064)
Q Consensus       874 ~~Nl~----------~~np~~~~Qa~~-~~riGq~~~v~v~rl~~~~t~ee~~~~~~k~~~~~~~  927 (1064)
                      +.||+          ||||++|.||+| ||||||+|+|.||||+|++||||.|+..+-.|.-+++
T Consensus       553 GINL~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~RLitentVEe~IveRA~~KL~Ld~  617 (971)
T KOG0385|consen  553 GINLTAADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVYRLITENTVEEKIVERAAAKLRLDK  617 (971)
T ss_pred             ccccccccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEEEEeccchHHHHHHHHHHHHhchhh
Confidence            77776          899999999999 9999999999999999999999999999988877764

>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]	Back alignment and domain information

>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]	Back alignment and domain information

>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]	Back alignment and domain information

>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]	Back alignment and domain information

>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]	Back alignment and domain information

>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional	Back alignment and domain information

>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]	Back alignment and domain information

>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]	Back alignment and domain information

>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]	Back alignment and domain information

>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]	Back alignment and domain information

>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]	Back alignment and domain information

>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]	Back alignment and domain information

>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]	Back alignment and domain information

>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]	Back alignment and domain information

>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]	Back alignment and domain information

>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e	Back alignment and domain information

>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]	Back alignment and domain information

>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]	Back alignment and domain information

>PRK04914 ATP-dependent helicase HepA; Validated	Back alignment and domain information

>KOG0383 consensus Predicted helicase [General function prediction only]	Back alignment and domain information

>TIGR00603 rad25 DNA repair helicase rad25	Back alignment and domain information

>PRK13766 Hef nuclease; Provisional	Back alignment and domain information

>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]	Back alignment and domain information

>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3	Back alignment and domain information

>smart00487 DEXDc DEAD-like helicases superfamily	Back alignment and domain information

>cd00046 DEXDc DEAD-like helicases superfamily	Back alignment and domain information

>PHA02558 uvsW UvsW helicase; Provisional	Back alignment and domain information

>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]	Back alignment and domain information

>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional	Back alignment and domain information

>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]	Back alignment and domain information

>cd00268 DEADc DEAD-box helicases	Back alignment and domain information

>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family	Back alignment and domain information

>TIGR00643 recG ATP-dependent DNA helicase RecG	Back alignment and domain information

>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases	Back alignment and domain information

>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1	Back alignment and domain information

>PRK10917 ATP-dependent DNA helicase RecG; Provisional	Back alignment and domain information

>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]	Back alignment and domain information

>PRK01172 ski2-like helicase; Provisional	Back alignment and domain information

>PRK11192 ATP-dependent RNA helicase SrmB; Provisional	Back alignment and domain information

>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family	Back alignment and domain information

>PRK02362 ski2-like helicase; Provisional	Back alignment and domain information

>PRK10689 transcription-repair coupling factor; Provisional	Back alignment and domain information

>PRK10590 ATP-dependent RNA helicase RhlE; Provisional	Back alignment and domain information

>TIGR00580 mfd transcription-repair coupling factor (mfd)	Back alignment and domain information

>PRK11776 ATP-dependent RNA helicase DbpA; Provisional	Back alignment and domain information

>PRK00254 ski2-like helicase; Provisional	Back alignment and domain information

>COG1204 Superfamily II helicase [General function prediction only]	Back alignment and domain information

>PTZ00424 helicase 45; Provisional	Back alignment and domain information

>TIGR01389 recQ ATP-dependent DNA helicase RecQ	Back alignment and domain information

>PRK11057 ATP-dependent DNA helicase RecQ; Provisional	Back alignment and domain information

>PTZ00110 helicase; Provisional	Back alignment and domain information

>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional	Back alignment and domain information

>KOG0354 consensus DEAD-box like helicase [General function prediction only]	Back alignment and domain information

>PRK04837 ATP-dependent RNA helicase RhlB; Provisional	Back alignment and domain information

>PRK01297 ATP-dependent RNA helicase RhlB; Provisional	Back alignment and domain information

>PRK04537 ATP-dependent RNA helicase RhlB; Provisional	Back alignment and domain information

>PRK11634 ATP-dependent RNA helicase DeaD; Provisional	Back alignment and domain information

>PRK13767 ATP-dependent helicase; Provisional	Back alignment and domain information

>PRK09401 reverse gyrase; Reviewed	Back alignment and domain information

>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]	Back alignment and domain information

>COG4889 Predicted helicase [General function prediction only]	Back alignment and domain information

>PRK05580 primosome assembly protein PriA; Validated	Back alignment and domain information

>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]	Back alignment and domain information

>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type	Back alignment and domain information

>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase	Back alignment and domain information

>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>TIGR00595 priA primosomal protein N'	Back alignment and domain information

>TIGR01587 cas3_core CRISPR-associated helicase Cas3	Back alignment and domain information

>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain	Back alignment and domain information

>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional	Back alignment and domain information

>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional	Back alignment and domain information

>TIGR03714 secA2 accessory Sec system translocase SecA2	Back alignment and domain information

>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]	Back alignment and domain information

>TIGR01054 rgy reverse gyrase	Back alignment and domain information

>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]	Back alignment and domain information

>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype	Back alignment and domain information

>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]	Back alignment and domain information

>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>COG1201 Lhr Lhr-like helicases [General function prediction only]	Back alignment and domain information

>PRK14701 reverse gyrase; Provisional	Back alignment and domain information

>PRK09200 preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>PRK09751 putative ATP-dependent helicase Lhr; Provisional	Back alignment and domain information

>PHA02653 RNA helicase NPH-II; Provisional	Back alignment and domain information

>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A	Back alignment and domain information

>TIGR00963 secA preprotein translocase, SecA subunit	Back alignment and domain information

>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]	Back alignment and domain information

>PRK09694 helicase Cas3; Provisional	Back alignment and domain information

>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative	Back alignment and domain information

>PF11496 HDA2-3: Class II histone deacetylase complex subunits 2 and 3; InterPro: IPR021006 This entry contains the class II histone deacetylase complex subunits HDA2 and HDA3 is found in fungi	Back alignment and domain information

>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]	Back alignment and domain information

>PRK12898 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>PRK12899 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB	Back alignment and domain information

>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4	Back alignment and domain information

>PRK11664 ATP-dependent RNA helicase HrpB; Provisional	Back alignment and domain information

>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]	Back alignment and domain information

>COG1110 Reverse gyrase [DNA replication, recombination, and repair]	Back alignment and domain information

>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]	Back alignment and domain information

>TIGR00604 rad3 DNA repair helicase (rad3)	Back alignment and domain information

>PRK13104 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]	Back alignment and domain information

>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]	Back alignment and domain information

>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]	Back alignment and domain information

>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule	Back alignment and domain information

>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]	Back alignment and domain information

>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]	Back alignment and domain information

>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli []	Back alignment and domain information

>PRK10536 hypothetical protein; Provisional	Back alignment and domain information

>PRK13103 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>PRK11131 ATP-dependent RNA helicase HrpA; Provisional	Back alignment and domain information

>KOG0343 consensus RNA Helicase [RNA processing and modification]	Back alignment and domain information

>COG3587 Restriction endonuclease [Defense mechanisms]	Back alignment and domain information

>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]	Back alignment and domain information

>PRK13107 preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>PRK04296 thymidine kinase; Provisional	Back alignment and domain information

>KOG4284 consensus DEAD box protein [Transcription]	Back alignment and domain information

>PRK12904 preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function	Back alignment and domain information

>PRK14873 primosome assembly protein PriA; Provisional	Back alignment and domain information

>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin	Back alignment and domain information

>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A	Back alignment and domain information

>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA	Back alignment and domain information

>PRK12326 preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>TIGR00376 DNA helicase, putative	Back alignment and domain information

>smart00249 PHD PHD zinc finger	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		1064
1z6a_A		500	Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE DOMAIN		2e-13
1z63_A		500	Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE IN COM		6e-13
3mwy_W		800	Crystal Structure Of The Chromodomain-atpase Portio		7e-07

>pdb|1Z6A|A Chain A, Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE DOMAIN Length = 500

Back alignment and structure

Iteration: 1

Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 67/299 (22%), Positives = 117/299 (39%), Gaps = 63/299 (21%) Query: 501 TLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTY 560 +L++CP +L W+ E+++ P +E L D DI+LTTY Sbjct: 89 SLVICPLSVLKNWEEELSKFA-PHLRFAVFHEDRSKIKLED-----------YDIILTTY 136 Query: 561 DVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEM 620 VL D T L + W I +DEAQ +++ + Sbjct: 137 AVLLRD-------------------------TRLKEVEWKYIVIDEAQNIKNPQTKIFKA 171 Query: 621 ALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFSISRWWIEVIRDPYENGDVGAMEF 680 L +K+R +TGTPI+ K+DDL+ ++ FL + P + GD A E Sbjct: 172 VKELKSKYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEE 231 Query: 681 THKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQSQHETCVGYAREVIQR 740 + R +K + LP + E + +P + Y+++ ++ Sbjct: 232 LKAIISPFILRRTKYDKAIINDLPDKIETNVYCNLTPEQAAMYKAE-----------VEN 280 Query: 741 LKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHPQVGSSGLRSLQQS 799 L +NI + + +L++LLKL+Q HP + G +S+++S Sbjct: 281 LFNNI---------------DSVTGIKRKGMILSTLLKLKQIVDHPALLKGGEQSVRRS 324

PyMOL of 1z6a

>pdb|1Z63|A Chain A, Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE IN COMPLEX With Dsdna Length = 500

Back alignment and structure

>pdb|3MWY|W Chain W, Crystal Structure Of The Chromodomain-atpase Portion Of The Yeast Chd1 Chromatin Remodeler Length = 800

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		1064
1z63_A		500	Helicase of the SNF2/RAD54 hamily; protein-DNA com	4e-27
1z63_A		500	Helicase of the SNF2/RAD54 hamily; protein-DNA com	1e-06
3mwy_W		800	Chromo domain-containing protein 1; SWI2/SNF2 ATPa	8e-15
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-11
1z3i_X		644	Similar to RAD54-like; recombination ATPase helica	4e-10
3dmq_A		968	RNA polymerase-associated protein RAPA; SWF2/SNF2,	5e-10
3o7a_A		52	PHD finger protein 13 variant; PHF13, zinc finger,	3e-08
1wem_A		76	Death associated transcription factor 1; structura	4e-08
2rsd_A		68	E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant	5e-08
1wee_A		72	PHD finger family protein; structural genomics, PH	7e-08
3o70_A		68	PHD finger protein 13; PHF13, structural genomics	2e-07
1wew_A		78	DNA-binding family protein; structural genomics, P	2e-07
3pur_A		528	Lysine-specific demethylase 7 homolog; oxidoreduct	2e-07
1we9_A		64	PHD finger family protein; structural genomics, PH	3e-06
3kqi_A		75	GRC5, PHD finger protein 2; metal-binding, zinc-fi	3e-06
1wep_A		79	PHF8; structural genomics, PHD domain, riken struc	5e-05
3lqh_A		183	Histone-lysine N-methyltransferase MLL; PHD finger	1e-04
2k16_A		75	Transcription initiation factor TFIID subunit 3; p	2e-04
2kgg_A		52	Histone demethylase jarid1A; PHD finger, histone m	3e-04
3kv5_D		488	JMJC domain-containing histone demethylation prote	4e-04
3kv4_A		447	PHD finger protein 8; epigenetics, histone CODE, c	8e-04

>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A Length = 500	Back alignment and structure

 Score =  115 bits (291), Expect = 4e-27
 Identities = 64/299 (21%), Positives = 111/299 (37%), Gaps = 81/299 (27%)

Query: 497 ATGATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIV 556
               +L++CP  +L  W+ E+++   P  L+  ++   R+            +L   DI+
Sbjct: 85  ELTPSLVICPLSVLKNWEEELSKFA-P-HLRFAVFHEDRSKI----------KLEDYDII 132

Query: 557 LTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAA 616
           LTTY VL  D                           L  + W  I +DEAQ ++ N   
Sbjct: 133 LTTYAVLLRDTR-------------------------LKEVEWKYIVIDEAQNIK-NPQT 166

Query: 617 ATEMALR-LYAKHRWCITGTPIQRKLDDLYGLLRFL------KSSPFSISRWWIEVIRDP 669
               A++ L +K+R  +TGTPI+ K+DDL+ ++ FL        S F            P
Sbjct: 167 KIFKAVKELKSKYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFK------SKFATP 220

Query: 670 YENGDVGAMEFTHKFFKEIMCRSSK--VHVSDELQLPPQEECVSWLTFSPIEEHFYQSQH 727
            + GD  A E         + R +K    + ++  LP + E   +   +P +   Y++  
Sbjct: 221 IKKGDNMAKEELKAIISPFILRRTKYDKAIIND--LPDKIETNVYCNLTPEQAAMYKA-- 276

Query: 728 ETCVGYAREVIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHP 786
                    +   +      +                       +L++LLKL+Q   HP
Sbjct: 277 -----EVENLFNNIDSVTGIKR-------------------KGMILSTLLKLKQIVDHP 311

PyMOL of 1z63

>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A Length = 500	Back alignment and structure

>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae} Length = 800	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19 Length = 644	Back alignment and structure

>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12} Length = 968	Back alignment and structure

>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens} Length = 52	Back alignment and structure

>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2 Length = 76	Back alignment and structure

>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group} Length = 68	Back alignment and structure

>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 Length = 72	Back alignment and structure

>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens} Length = 68	Back alignment and structure

>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 Length = 78	Back alignment and structure

>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A* Length = 528	Back alignment and structure

>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 Length = 64	Back alignment and structure

>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} Length = 75	Back alignment and structure

>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2 Length = 79	Back alignment and structure

>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A Length = 183	Back alignment and structure

>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A* Length = 75	Back alignment and structure

>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A* Length = 52	Back alignment and structure

>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A* Length = 488	Back alignment and structure

>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens} Length = 447	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		1064
d1z63a1		230	c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 h	1e-11
d1z63a1		230	c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 h	2e-04
d1wema_		76	g.50.1.2 (A:) Death associated transcription facto	2e-08
d1z3ix2		298	c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fis	6e-08
d1z3ix2		298	c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fis	1e-04
d1weea_		72	g.50.1.2 (A:) PHD finger protein At1g33420 {Thale	3e-07
d1wepa_		79	g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus mus	5e-07
d1wewa_		78	g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale c	1e-06
d1we9a_		64	g.50.1.2 (A:) PHD finger protein At5g26210 {Thale	3e-05

>d1z63a1 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} Length = 230	Back information, alignment and structure


class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Helicase of the SNF2/Rad54 hamily
species: Sulfolobus solfataricus [TaxId: 2287]

 Score = 63.5 bits (153), Expect = 1e-11
 Identities = 30/111 (27%), Positives = 49/111 (44%)

Query: 594 LTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKS 653
           L  + W  I +DEAQ +++      +    L +K+R  +TGTPI+ K+DDL+ ++ FL  
Sbjct: 120 LKEVEWKYIVIDEAQNIKNPQTKIFKAVKELKSKYRIALTGTPIENKVDDLWSIMTFLNP 179

Query: 654 SPFSISRWWIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLP 704
                   +      P + GD  A E         + R +K   +    LP
Sbjct: 180 GLLGSYSEFKSKFATPIKKGDNMAKEELKAIISPFILRRTKYDKAIINDLP 230

PyMOL of d1z63a1

>d1z63a1 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} Length = 230	Back information, alignment and structure

>d1wema_ g.50.1.2 (A:) Death associated transcription factor 1, Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]} Length = 76	Back information, alignment and structure

>d1z3ix2 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} Length = 298	Back information, alignment and structure

>d1z3ix2 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} Length = 298	Back information, alignment and structure

>d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 72	Back information, alignment and structure

>d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 10090]} Length = 79	Back information, alignment and structure

>d1wewa_ g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 78	Back information, alignment and structure

>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 64	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		1064
d1z63a1		230	Helicase of the SNF2/Rad54 hamily {Sulfolobus solf	100.0
d1z3ix2		298	Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI	100.0
d1z3ix1		346	Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI	99.92
d1z5za1		244	Helicase of the SNF2/Rad54 hamily {Sulfolobus solf	99.87
d2fz4a1		206	DNA repair protein RAD25 {Archaeoglobus fulgidus [	99.78
d1rifa_		282	DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]	99.75
d1wp9a1		200	putative ATP-dependent RNA helicase PF2015 {Pyroco	99.58
d2p6ra3		202	Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22	99.29
d1a1va1		136	HCV helicase domain {Human hepatitis C virus (HCV)	99.0
d1gkub1		237	Helicase-like "domain" of reverse gyrase {Archaeon	98.97
d1yksa1		140	YFV helicase domain {Yellow fever virus [TaxId: 11	98.92
d1gm5a3		264	RecG helicase domain {Thermotoga maritima [TaxId:	98.72
d1oywa2		206	RecQ helicase domain {Escherichia coli [TaxId: 562	98.66
d1hv8a1		208	Putative DEAD box RNA helicase {Archaeon Methanoco	98.53
d2eyqa3		233	Transcription-repair coupling factor, TRCF {Escher	98.51
d2fwra1		200	DNA repair protein RAD25 {Archaeoglobus fulgidus [	98.18
d2bmfa2		305	Dengue virus helicase {Dengue virus type 2 [TaxId:	98.13
d1wrba1		238	putative ATP-dependent RNA helicase VlgB {Flatworm	98.12
d2g9na1		218	Initiation factor 4a {Human (Homo sapiens) [TaxId:	98.05
d1qdea_		212	Initiation factor 4a {Baker's yeast (Saccharomyces	97.99
d2j0sa1		222	Probable ATP-dependent RNA helicase DDX48 {Human (	97.84
d1t6na_		207	Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo	97.68
d1veca_		206	DEAD box RNA helicase rck/p54 {Human (Homo sapiens	97.63
d1q0ua_		209	Probable DEAD box RNA helicase YqfR {Bacillus stea	97.18
d1s2ma1		206	Putative ATP-dependent RNA helicase DHH1 {Baker's	96.79
d1wp9a2		286	putative ATP-dependent RNA helicase PF2015 {Pyroco	96.68
d1weea_		72	PHD finger protein At1g33420 {Thale cress (Arabido	95.4
d1wepa_		79	PHD finger protein 8 {Mouse (Mus musculus) [TaxId:	94.62
d1wewa_		78	Sumoylation ligase E3, SIZ1 {Thale cress (Arabidop	93.81
d1wema_		76	Death associated transcription factor 1, Datf1 (DI	93.21
d1w36d1		359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	92.55
d1we9a_		64	PHD finger protein At5g26210 {Thale cress (Arabido	90.79

>d1z63a1 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Helicase of the SNF2/Rad54 hamily
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=100.00  E-value=0  Score=358.04  Aligned_cols=227  Identities=30%  Similarity=0.471  Sum_probs=196.9

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf             89888468882899999999997200999998311001236788777543476663010267886557988888875453
Q 001510          281 EDLPDLLPLLRPYQRRAAYWMVQREKGDSASSSERERSQFFSPLCMPMDFLDTYSTLFYNPFSGSLSLSPDYTSSYVFGG  360 (1064)
Q Consensus       281 ~~~p~L~~~LrpYQ~~aV~WMl~RE~~~~~~~~~~~~~~~~~Plw~~~~~~d~~~~~yyn~~tG~is~~~~~~~~~~rGG  360 (1064)
                      .+|++|+.+|+|||++||.||+.++....                                                 ||
T Consensus         4 ~~P~~~~~~L~~yQ~~~v~~~~~~~~~~~-------------------------------------------------g~   34 (230)
T d1z63a1           4 LEPYNIKANLRPYQIKGFSWMRFMNKLGF-------------------------------------------------GI   34 (230)
T ss_dssp             CCCCSCSSCCCHHHHHHHHHHHHHHHTTC-------------------------------------------------CE
T ss_pred             CCCHHHHCCHHHHHHHHHHHHHHHHHCCC-------------------------------------------------CE
T ss_conf             69446504506999999999998621699-------------------------------------------------87


Q ss_pred             EEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             66629886368999999998139999984111122123202356677621111443203554311124652101323534
Q 001510          361 ILADEMGLGKTVELLACIFAHRKPASDDSIFIDTAVQVTDDQKVNLRRLKRERVECICGAVSESRKYKGLWVQCDICDAW  440 (1064)
Q Consensus       361 ILADEMGLGKTie~LALIl~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~cg~~~~~~~~~g~~v~c~~c~~w  440 (1064)
                      |||||||||||+++|+++......                                                        
T Consensus        35 iLaDe~GlGKT~~~i~~~~~~~~~--------------------------------------------------------   58 (230)
T d1z63a1          35 CLADDMGLGKTLQTIAVFSDAKKE--------------------------------------------------------   58 (230)
T ss_dssp             EECCCTTSCHHHHHHHHHHHHHHT--------------------------------------------------------
T ss_pred             EEEECCCCCHHHHHHHHHHHHHHC--------------------------------------------------------
T ss_conf             998589988699998735544212--------------------------------------------------------


Q ss_pred             CCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCEEEEECCCHHHHHHHHHHHC
Q ss_conf             45665576889876540356631013565432102578543320001110278989999389990981178999999842
Q 001510          441 QHADCVGYSPRGKKRRSTFELKKHTRKKDMTNIVVRDGEHICQWCDELIEATDSPVATGATLIVCPAPILAQWDAEITRH  520 (1064)
Q Consensus       441 ~ha~cv~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~~~~~~~~tLIV~P~SLl~QW~~Ei~k~  520 (1064)
                                                                             ...+++|||||++++.||.+|+.+|
T Consensus        59 -------------------------------------------------------~~~~~~LIv~p~~l~~~W~~e~~~~   83 (230)
T d1z63a1          59 -------------------------------------------------------NELTPSLVICPLSVLKNWEEELSKF   83 (230)
T ss_dssp             -------------------------------------------------------TCCSSEEEEECSTTHHHHHHHHHHH
T ss_pred             -------------------------------------------------------CCCCCCCEECCHHHHHHHHHHHHHH
T ss_conf             -------------------------------------------------------3556441105355426777777764


Q ss_pred             CCCCCCEEEEECCCCCCCCCCCCCCHHHHHCCCCEEEEEHHHHHHHCCCCCCCCCCCHHHHHHCCCCCCCCHHHCCCCCC
Q ss_conf             89999729997188766555432100211027889998168886310468777665033432102478720100012222
Q 001510          521 TRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWW  600 (1064)
Q Consensus       521 ~~~~~l~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~r~~~r~~kry~~~~s~L~~i~w~  600 (1064)
                      +.  ..++..+++....          ....+++|+|++|+.+.+..                         .+..+.|+
T Consensus        84 ~~--~~~~~~~~~~~~~----------~~~~~~~vvi~~~~~~~~~~-------------------------~l~~~~~~  126 (230)
T d1z63a1          84 AP--HLRFAVFHEDRSK----------IKLEDYDIILTTYAVLLRDT-------------------------RLKEVEWK  126 (230)
T ss_dssp             CT--TSCEEECSSSTTS----------CCGGGSSEEEEEHHHHTTCH-------------------------HHHTCCEE
T ss_pred             CC--CCCCEEECCCCCH----------HHCCCCCEEEEEHHHHHHHH-------------------------HHHCCCCE
T ss_conf             02--5441010142100----------00257688985499998688-------------------------87416513


Q ss_pred             EEEECCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHCCCCCCCCHHHHHH
Q ss_conf             18855422248917899999997403709999546888993466742210179999960012432128987887116999
Q 001510          601 RICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFSISRWWIEVIRDPYENGDVGAMEF  680 (1064)
Q Consensus       601 rVILDEAH~iKN~~Sk~~kal~~L~a~~Rw~LTGTPiqN~l~DL~sLL~FL~p~~l~~~~~F~~~~~~pi~~g~~~~~~~  680 (1064)
                      +||+||||++||+.++.++++..+++.+||+|||||++|++.|||++++||.|++|++...|.+.|..++..++....++
T Consensus       127 ~vI~DEah~~k~~~s~~~~~~~~l~a~~r~~LTgTPi~n~~~dl~~ll~~l~p~~~~~~~~F~~~~~~~~~~~~~~~~~~  206 (230)
T d1z63a1         127 YIVIDEAQNIKNPQTKIFKAVKELKSKYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEE  206 (230)
T ss_dssp             EEEEETGGGGSCTTSHHHHHHHTSCEEEEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCHHHHHH
T ss_pred             EEEEEHHHCCCCCCHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHH
T ss_conf             99997100344322055666544046557997252677678889988876289867899999999844553267789999


Q ss_pred             HHHHHHHHHEECCCCCCCCCCCCC
Q ss_conf             999985342002222113578999
Q 001510          681 THKFFKEIMCRSSKVHVSDELQLP  704 (1064)
Q Consensus       681 L~~lL~~imlRRtK~dV~~el~LP  704 (1064)
                      |+.++++||+||+|.|+.-..+||
T Consensus       207 L~~~l~~~~lRr~K~d~~v~~dLP  230 (230)
T d1z63a1         207 LKAIISPFILRRTKYDKAIINDLP  230 (230)
T ss_dssp             HHHHHTTTEECCCTTCHHHHTTSC
T ss_pred             HHHHHHCCEEEEECCCCCHHHCCC
T ss_conf             999842337997168861755679

PyMOL of d1z63a1

>d1z3ix2 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]}	Back information, alignment and structure

>d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]}	Back information, alignment and structure

>d1z5za1 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]}	Back information, alignment and structure

>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]}	Back information, alignment and structure

>d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]}	Back information, alignment and structure

>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}	Back information, alignment and structure

>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}	Back information, alignment and structure

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}	Back information, alignment and structure

>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}	Back information, alignment and structure

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}	Back information, alignment and structure

>d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]}	Back information, alignment and structure

>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]}	Back information, alignment and structure

>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]}	Back information, alignment and structure

>d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]}	Back information, alignment and structure

>d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR {Bacillus stearothermophilus [TaxId: 1422]}	Back information, alignment and structure

>d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}	Back information, alignment and structure

>d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}	Back information, alignment and structure

>d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1wewa_ g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}	Back information, alignment and structure

>d1wema_ g.50.1.2 (A:) Death associated transcription factor 1, Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}	Back information, alignment and structure