Citrus Sinensis ID: 001515

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060---
MANYLAQFQSIKSTCDRIVIAVEDVSDLWPTIQSGFEEQLPFKRACLNNKTRNPVFVEKLPAEFILTTDARLRSRFPQEQLLFWFREPYATVVLVTCEDLDEFKTILKPRLKLITQNDEREWFIVFVSKAHPNNDQANKMAKKVFAKLEVDFNSKKRERCCKFDIHGPEPNFWEDLESKVMESIRNTLDRRVQFFEDEIRKLSELRFMPVWNFCNFFILKESLAFMFEMAHLHEDALREYDELELCYLETVNMNGKHKEFGGVERGDDEAALLNPGNKALTEIVQDDSFREFEFRQYLFACQSKLLFKLNRPFEVASRGYPFIISFSKALAQHEDILPFCMREVWVITACLALIDATSSQYNDGLAAPDIEKEFYRLLGDLYSLCRIKFMRLAYLIGHGTDIERSPVNSASLSMLPWPKPPVWPLVPADASAEVLAKEKLILQATPRVKHFGIHRKPLPLEPSVLLREANRRRASLSAGNMFEIFDGSGPDVSLRMSPSNKVQAVSMSRTNSSPGFESSIDRPMRLAEIFVASEHALRQTISNPNLLKSLSSVEEFEQKYLELTKGAANNYHCSWWKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLSCVRLLSLDKGLFSTKERQAFQSEVISLAYGEMKDPVPLDVSSLITFSGNPGPPLELCDGDPGTLSVTVWSGFPDDITVDTLSLTLMATYNADEGAKALNTSTATVLKPGRNTITVDLPPQKPGSYVLGALTGHIGRLRFRSHSFSKVGPADSDDFMSYEKPTRPILKVFNPRPLVDLAAAISSPLLINEAQWVGIIVQPIDYSLKGAILQIDTGPGLTIEESHFVEMESHIKLSNLENCHNIQKDCSLDINKDFERLHLHDGRIQLPDWASNLTSILWIPIRAINNSLARGSSSVTPQRQSIVDGMRTIALKLQFGVCHNQIFERTIAVHFTDPFHVSTRIADKCSDGTLLLQVILHSQVNASLTIYDAWLDLQDGFVHTRQGDGRPTSGFFPLVISSSSKAGILFSICLGKTTPEGIDF
cccccccccccccccccEEEEEEcccccHHHHHHHHHHccccccEEEEcccccccEEEEEEcEEEEccHHHHHcccccccccccccccEEEEEEEEcccHHHHHHHHHHHHHHHHHcccccEEEEEEEcccccccccccccHHHHHHHHHHcccccccEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHccccHHHccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHcccccHHHHHHHccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHcHHHHHHHHHHccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHccccccccHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccEEEEEEEEEcccccEEEcEEEEEEEEccccccccEEEEEcccEEEcccccEEEEEEcccccEEEEEEEEEEEEEEEEEEEccccccccccccccccccccccccEEEccccccEEEEEcccccccccccEEEEEEEEEccEEEEEEEEEEEcccccEEEEcccEEEEEcccccccccccccccccccccccccEEEEEEEcEEEEccccccccEEEEEEEEEEEcccccccccccccEEEEEEEEEEEEEEcccccccccHHEEEEEccccccEEEEEEEEEcccccEEEEEEEEEEcccccEEEEEEEEcccccEEEccccccccccccccEEEcccccccEEEEEEccccccccccc
cHcHHHHHEcccccccEEEEEEcccccHHHHHHHHHHHHccccccEEccccccccEEEEEEEEEEEccHHHHHccccccccccHccccEEEEEEEEcccHHHHHHHHHHHHHHHHccccccEEEEEEEccccccccccccccHHHHHHHHHcccccccEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHccccccccccccccccccccccccHccHHccccccccccccccccccccccHHHHHHHHHHHHHccccHHHHHcccccccccccccccccccccccccccccccccccccccHHHHHHHccHHHHHHHcccHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHcccccccccccccHEHHccccccccEEccccccEEEEEEEcccccccEEEEEEEEEEEEcccccccEEEEccccEEEEccccEEEEEEcccccccEEEEEEEEEEEEEEEEEcccccccccccHHcHccccccccEEEEcccccHcccccccccHHHcccccEEEEEEEEccccccccEEEEEcccccEEEcccEEEEEEEccccccccccccccccccccccccEEEEcccccEEcccccccccEEEEEEEEEEccccccccccccHHHHHHHHHHHEEEEEEEEcccHcHHEHHEEEEEcccccEEEEEEEEccccccEEEEEEEccHEEEEEEEEEEEEEcccccEEccccccccccccccEEEcccccEEEEEEEEEcccccccccc
MANYLAQFQSIKSTCDRIVIAvedvsdlwptiqsgfeeqlpfkraclnnktrnpvfveklpaefilttdarlrsrfpqeqllfwfrepyATVVLVTCEDLDEFKTILKPRLKLITQNDEREWFIVFVSkahpnndqaNKMAKKVFAKLEVDfnskkrercckfdihgpepnfwEDLESKVMESIRNTLDRRVQFFEDEIRKLselrfmpvwnfCNFFILKESLAFMFEMAHLHEDALREYDELELCYLETVNmngkhkefggvergddeaallnpgnkalteivqddsfrefEFRQYLFACQSKLLfklnrpfevasrgypFIISFSKALAQHEDILPFCMREVWVITACLALIDATssqyndglaapdIEKEFYRLLGDLYSLCRIKFMRLAYLIghgtdierspvnsaslsmlpwpkppvwplvpadaSAEVLAKEKLILqatprvkhfgihrkplplepsvLLREANRRRaslsagnmfeifdgsgpdvslrmspsnkVQAVSMsrtnsspgfessidrpMRLAEIFVASEHALRqtisnpnllksLSSVEEFEQKYLELTKGAANNYHCSWWKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLSCVRLLSldkglfstKERQAFQSEVISLAYgemkdpvpldvsslitfsgnpgpplelcdgdpgtlsvtvwsgfpdditvDTLSLTLMATYNADEGAKALNTstatvlkpgrntitvdlppqkpgsyvlGALTghigrlrfrshsfskvgpadsddfmsyekptrpilkvfnprplVDLAAAisspllineaQWVGIIVQPidyslkgailqidtgpgltieesHFVEMEShiklsnlenchniqkdcsldinkdferlhlhdgriqlpdwasnLTSILWIPIRAinnslargsssvtpqrqSIVDGMRTIALKLQFGVCHNQIFERtiavhftdpfhvstriadkcsdgTLLLQVILHSQVNASLTIYDAWLDLQdgfvhtrqgdgrptsgffplvisssskaGILFSIClgkttpegidf
MANYLAQFQSIKSTCDRIVIAVEDVSDLWPTIQSGFEEQLPFKRACLNNKTrnpvfveklpaEFILTTDARLRSRFPQEQLLFWFREPYATVVLVTCEDLDEFKTILKPRLKLITQNDEREWFIVFVSkahpnndqanKMAKKVFAKLEVdfnskkrercckfdihgpepnfwedLESKVMESIRNTLDRRVQFFEDEIRKlselrfmpVWNFCNFFILKESLAFMFEMAHLHEDALREYDELELCYLETVNMNGKHKEFGGVERGDDEAALLNPGNKALTEIVQDDSFREFEFRQYLFACQSKLLFKLNRPFEVASRGYPFIISFSKALAQHEDILPFCMREVWVITACLALIDATSSQYNDGLAAPDIEKEFYRLLGDLYSLCRIKFMRLAYLIGHGTDIERSPVNSASLSMLPWPKPPVWPLVPADASAEVLAKEKLILQatprvkhfgihrkplplepsvllREANRRRaslsagnmfeIFDGSGPDVSLRMSPSNKVQAvsmsrtnsspgfessidrPMRLAEIFVASEHALRQTISNPNLLKSLSSVEEFEQKYLELTKGAANNYHCSWWKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLSCVRLLSLDKGLFSTKERQAFQSEVISLAYGEMKDPVPLDVSSLITFSGNPGPPLELCDGDPGTLSVTVWSGFPDDITVDTLSLTLMATYNAdegakalntstatvlkpgrntitvdlppqkpGSYVLGALTGHIGRLRFRSHSFSkvgpadsddfmsyEKPTrpilkvfnprPLVDLAAAISSPLLINEAQWVGIIVQPIDYSLKGAILQIDTGPGLTIEESHFVEMESHIKLSNLENCHNIQKDCSLDINKDFERLHLHDGRIQLPDWASNLTSILWIPIRAINNslargsssvtpqrqSIVDGMRTIALKLQFGVCHNQIFERTIAVHFTDPFHVSTRIADKCSDGTLLLQVILHSQVNASLTIYDAWLDLQDGFVHTRQGDGRPTSGFFPLVISSSSKAGILFSICLGKTTPEGIDF
MANYLAQFQSIKSTCDRIVIAVEDVSDLWPTIQSGFEEQLPFKRACLNNKTRNPVFVEKLPAEFILTTDARLRSRFPQEQLLFWFREPYATVVLVTCEDLDEFKTILKPRLKLITQNDEREWFIVFVSKAHPNNDQANKMAKKVFAKLEVDFNSKKRERCCKFDIHGPEPNFWEDLESKVMESIRNTLDRRVQFFEDEIRKLSELRFMPVWNFCNFFILKESLAFMFEMAHLHEDALREYDELELCYLETVNMNGKHKEFGGVERGDDEAALLNPGNKALTEIVQDDSFREFEFRQYLFACQSKLLFKLNRPFEVASRGYPFIISFSKALAQHEDILPFCMREVWVITACLALIDATSSQYNDGLAAPDIEKEFYRLLGDLYSLCRIKFMRLAYLIGHGTDIERSPVNSASLSMlpwpkppvwplvpADASAEVLAKEKLILQATPRVKHFGIHRKPLPLEPSVLLREANRRRASLSAGNMFEIFDGSGPDVSLRMSPSNKVQAVSMSRTNSSPGFESSIDRPMRLAEIFVASEHALRQTISNPNLLKSLSSVEEFEQKYLELTKGAANNYHCSWWKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLSCVRLLSLDKGLFSTKERQAFQSEVISLAYGEMKDPVPLDVSSLITFSGNPGPPLELCDGDPGTLSVTVWSGFPDDITVDTLSLTLMATYNADEGAKALNTSTATVLKPGRNTITVDLPPQKPGSYVLGALTGHIGRLRFRSHSFSKVGPADSDDFMSYEKPTRPILKVFNPRPLVDLAAAISSPLLINEAQWVGIIVQPIDYSLKGAILQIDTGPGLTIEESHFVEMESHIKLSNLENCHNIQKDCSLDINKDFERLHLHDGRIQLPDWASNLTSILWIPIRAINNSLARGSSSVTPQRQSIVDGMRTIALKLQFGVCHNQIFERTIAVHFTDPFHVSTRIADKCSDGTLLLQVILHSQVNASLTIYDAWLDLQDGFVHTRQGDGRPTSGFFPLVISSSSKAGILFSICLGKTTPEGIDF
***YLAQFQSIKSTCDRIVIAVEDVSDLWPTIQSGFEEQLPFKRACLNNKTRNPVFVEKLPAEFILTTDARLRSRFPQEQLLFWFREPYATVVLVTCEDLDEFKTILKPRLKLITQNDEREWFIVFVSKAH*********AKKVFAKLEVDFNSKKRERCCKFDIHGPEPNFWEDLESKVMESIRNTLDRRVQFFEDEIRKLSELRFMPVWNFCNFFILKESLAFMFEMAHLHEDALREYDELELCYLETVNMNGKHKEFGGV******AALLNPGNKALTEIVQDDSFREFEFRQYLFACQSKLLFKLNRPFEVASRGYPFIISFSKALAQHEDILPFCMREVWVITACLALIDATSSQYNDGLAAPDIEKEFYRLLGDLYSLCRIKFMRLAYLIGHGTDIERSPVNSASLSMLPWPKPPVWPLVPADASAEVLAKEKLILQATPRVKHFGIHRKPLPL*****************************************************************LAEIFVASEHALRQTISNPNLLKSLSSVEEFEQKYLELTKGAANNYHCSWWKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLSCVRLLSLDKGLFSTKERQAFQSEVISLAYGEMKDPVPLDVSSLITFSGNPGPPLELCDGDPGTLSVTVWSGFPDDITVDTLSLTLMATYNADEGAKALNTSTATVLKPGRNTITVDLPPQKPGSYVLGALTGHIGRLRFRSHSF****************PTRPILKVFNPRPLVDLAAAISSPLLINEAQWVGIIVQPIDYSLKGAILQIDTGPGLTIEESHFVEMESHIKLSNLENCHNIQKDCSLDINKDFERLHLHDGRIQLPDWASNLTSILWIPIRAINNSLA***********SIVDGMRTIALKLQFGVCHNQIFERTIAVHFTDPFHVSTRIADKCSDGTLLLQVILHSQVNASLTIYDAWLDLQDGFVHTRQGDGRPTSGFFPLVISSSSKAGILFSICLGK********
****************RIVIAVEDVSDLWPTIQSGFEEQLPFKRACLNN*TR***FVEKLPAEFIL*****************WFREPYATVVLVTCEDLDEFKTILKPRLKLITQNDEREWFIVFVS***************VFAKLEVDFNSKKRERCCKFD*******FWEDLESKVMESIRNTLDRRVQFFEDE***********VWNFCNFFILKESLAFMFEMAHLHEDALREYDELELCYLETVNMNGKHKEFGGVERGDDEAALLNPGNKALTEIVQDDSFREFEFRQYLFACQSKLLFKLNRPFEVASRGYPFIISFSKALAQHEDILPFCMREVWVITACLALIDATSSQYN**********EFYRLLGDLYSLCRIKFMRLAYL******************************************************************PSVLLREANRRRASLSAGNMFEIFDGS******************************************************NPNLLKSLSSVEEFEQKYLELTKGAANNYHCSWWKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLSCVRLLSLDK******E**AFQSEVI************LDVSSLITFSGNPGPPLELCDGDPGTLSVTVWSGFPDDITVDTLSLTLMA*********ALNTSTATVLKPGRNTITVDLPPQKPGSYVLGALTGHIGRLRFRSHSF*************YEKPTRPILKVFNPRPLVDLAAAISSPLLINEAQWVGIIVQPIDYSLKGAILQIDTGPGLTIEES*******************************FERLHLHDGRIQLPDWASNLTSILWIPIRAINNS*************SIVDGMRTIALKLQFGVCHNQIFERTIAVHFTDPFHVSTRIADKCSDGTLLLQVILHSQVNASLTIYDAWLDLQDG*V**********SGFFPLVISSSSKAGILFSICLGKT*******
MANYLAQFQSIKSTCDRIVIAVEDVSDLWPTIQSGFEEQLPFKRACLNNKTRNPVFVEKLPAEFILTTDARLRSRFPQEQLLFWFREPYATVVLVTCEDLDEFKTILKPRLKLITQNDEREWFIVFVSKAHPNNDQANKMAKKVFAKLEVDFNSKKRERCCKFDIHGPEPNFWEDLESKVMESIRNTLDRRVQFFEDEIRKLSELRFMPVWNFCNFFILKESLAFMFEMAHLHEDALREYDELELCYLETVNMNGKHKEFGGVERGDDEAALLNPGNKALTEIVQDDSFREFEFRQYLFACQSKLLFKLNRPFEVASRGYPFIISFSKALAQHEDILPFCMREVWVITACLALIDATSSQYNDGLAAPDIEKEFYRLLGDLYSLCRIKFMRLAYLIGHGTDIERSPVNSASLSMLPWPKPPVWPLVPADASAEVLAKEKLILQATPRVKHFGIHRKPLPLEPSVLLREANRRRASLSAGNMFEIFDGSGPDV**************************SIDRPMRLAEIFVASEHALRQTISNPNLLKSLSSVEEFEQKYLELTKGAANNYHCSWWKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLSCVRLLSLDKGLFSTKERQAFQSEVISLAYGEMKDPVPLDVSSLITFSGNPGPPLELCDGDPGTLSVTVWSGFPDDITVDTLSLTLMATYNADEGAKALNTSTATVLKPGRNTITVDLPPQKPGSYVLGALTGHIGRLRFRSHSFSKVGPADSDDFMSYEKPTRPILKVFNPRPLVDLAAAISSPLLINEAQWVGIIVQPIDYSLKGAILQIDTGPGLTIEESHFVEMESHIKLSNLENCHNIQKDCSLDINKDFERLHLHDGRIQLPDWASNLTSILWIPIRAINNSLA**********QSIVDGMRTIALKLQFGVCHNQIFERTIAVHFTDPFHVSTRIADKCSDGTLLLQVILHSQVNASLTIYDAWLDLQDGFVHTRQGDGRPTSGFFPLVISSSSKAGILFSICLGKTTPEGIDF
*ANYLAQFQSIKSTCDRIVIAVEDVSDLWPTIQSGFEEQLPFKRACLNNKTRNPVFVEKLPAEFILTTDARLRSRFPQEQLLFWFREPYATVVLVTCEDLDEFKTILKPRLKLITQNDEREWFIVFVSKAHPNNDQANKMAKKVFAKLEVDFNSKKRERCCKFDIHGPEPNFWEDLESKVMESIRNTLDRRVQFFEDEIRKLSELRFMPVWNFCNFFILKESLAFMFEMAHLHEDALREYDELELCYLETVNMNGKHKEFGGVERGDDEAALLNPGNKALTEIVQDDSFREFEFRQYLFACQSKLLFKLNRPFEVASRGYPFIISFSKALAQHEDILPFCMREVWVITACLALIDATSSQYNDGLAAPDIEKEFYRLLGDLYSLCRIKFMRLAYLIGHGTDIERSPVNSASLSMLPWPKPPVWPLVPADASAEVLAKEKLILQATPRVKHFGIHRKPLPLEPSVLLREANRRRASLSAGNMFEIFDGS********************************DRPMRLAEIFVASEHALRQTISNPNLLKSLSSVEEFEQKYLELTKGAANNYHCSWWKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLSCVRLLSLDKGLFSTKERQAFQSEVISLAYGEMKDPVPLDVSSLITFSGNPGPPLELCDGDPGTLSVTVWSGFPDDITVDTLSLTLMATYNADEGAKALNTSTATVLKPGRNTITVDLPPQKPGSYVLGALTGHIGRLRFRSHSFSKVGPADSDDFMSYEKPTRPILKVFNPRPLVDLAAAISSPLLINEAQWVGIIVQPIDYSLKGAILQIDTGPGLTIEESHFVEMESHIKLS************SLDINKDFERLHLHDGRIQLPDWASNLTSILWIPIRAINNSLARGSSSVTPQRQSIVDGMRTIALKLQFGVCHNQIFERTIAVHFTDPFHVSTRIADKCSDGTLLLQVILHSQVNASLTIYDAWLDLQDGFVHTRQGDGRPTSGFFPLVISSSSKAGILFSICLGKT*******
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MANYLAQFQSIKSTCDRIVIAVEDVSDLWPTIQSGFEEQLPFKRACLNNKTRNPVFVEKLPAEFILTTDARLRSRFPQEQLLFWFREPYATVVLVTCEDLDEFKTILKPRLKLITQNDEREWFIVFVSKAHPNNDQANKMAKKVFAKLEVDFNSKKRERCCKFDIHGPEPNFWEDLESKVMESIxxxxxxxxxxxxxxxxxxxxxRFMPVWNFCNFFILKESLAFMFEMAHLHEDALREYDELELCYLETVNMNGKHKEFGGVERGDDEAALLNPGNKALTEIVQDDSFREFEFRQYLFACQSKLLFKLNRPFEVASRGYPFIISFSKALAQHEDILPFCMREVWVITACLALIDATSSQYNDGLAAPDIEKEFYRLLGDLYSLCRIKFMRLAYLIGHGTDIERSPVNSASLSMLPWPKPPVWPLVPADASAEVLAKEKLILQATPRVKHFGIHRKPLPLEPSVLLREANRRRASLSAGNMFEIFDGSGPDVSLRMSPSNKVQAVSMSRTNSSPGFESSIDRPMRLAEIFVASEHALRQTISNPNLLKSLSSVEEFEQKYLELTKGAANNYHCSWWKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLSCVRLLSLDKGLFSTKERQAFQSEVISLAYGEMKDPVPLDVSSLITFSGNPGPPLELCDGDPGTLSVTVWSGFPDDITVDTLSLTLMATYNADEGAKALNTSTATVLKPGRNTITVDLPPQKPGSYVLGALTGHIGRLRFRSHSFSKVGPADSDDFMSYEKPTRPILKVFNPRPLVDLAAAISSPLLINEAQWVGIIVQPIDYSLKGAILQIDTGPGLTIEESHFVEMESHIKLSNLENCHNIQKDCSLDINKDFERLHLHDGRIQLPDWASNLTSILWIPIRAINNSLARGSSSVTPQRQSIVDGMRTIALKLQFGVCHNQIFERTIAVHFTDPFHVSTRIADKCSDGTLLLQVILHSQVNASLTIYDAWLDLQDGFVHTRQGDGRPTSGFFPLVISSSSKAGILFSICLGKTTPEGIDF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query1063 2.2.26 [Sep-21-2011]
Q556Z3 1442 Trafficking protein parti yes no 0.322 0.237 0.291 8e-45
Q3TLI0 1259 Trafficking protein parti yes no 0.286 0.242 0.258 8e-23
P48553 1259 Trafficking protein parti yes no 0.285 0.241 0.260 4e-21
Q9VFB71145 Trafficking protein parti yes no 0.224 0.208 0.249 2e-13
>sp|Q556Z3|TPC10_DICDI Trafficking protein particle complex subunit 10 OS=Dictyostelium discoideum GN=trapcc10-1 PE=3 SV=1 Back     alignment and function desciption
 Score =  183 bits (464), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 112/384 (29%), Positives = 196/384 (51%), Gaps = 41/384 (10%)

Query: 16  DRIVIAVEDVSDLWPTIQSGFEEQLPFKRACLNNKTRNPVFVEKLPAEFILTTDARLRSR 75
           + I I+ +D S +W  I++     LP K      KT +   VEK+P E +   D R+++ 
Sbjct: 96  EHITISYQDESSIWKYIEAELPNHLPLKNISWKTKTGHTKVVEKMPIEILQYNDERVKAH 155

Query: 76  FPQEQLLFWFREPYATVVLVTCEDLDEFKTILKPRLK-LITQNDER--EWFIVFVSKAHP 132
           +  + L   +++PY  + LV C+D D +K +++ ++K  +TQ  ER  EW IV+VS    
Sbjct: 156 YDNQNL---YKKPYLYLYLVHCDDPDTYKNVVRAKIKQWVTQMTERQQEWLIVYVSLGPK 212

Query: 133 N-NDQANKMAKKVFAKLEVDFNSKKRERCCKF---DIHGP-------------------- 168
             ++  +K+ + VF +++ DFN K R+RCC+    D +                      
Sbjct: 213 RFSELTSKLTRTVFDRIKNDFNVK-RDRCCQLRFLDTNNTSSGNNKDKDNDNGGGSSGTG 271

Query: 169 -------EPNFWEDLESKVMESIRNTLDRRVQFFEDEIRKLSELRFMPVWNFCNFFILKE 221
                  + + W+D   K+ E I ++ ++ +  +EDEIRK+   R  P W++ NFF +KE
Sbjct: 272 LSTSTKQQDDLWDDFLIKMKEGIISSAEQYLTTYEDEIRKMDAKRTTPGWSYQNFFFIKE 331

Query: 222 SLAFMFEMAHLHEDALREYDELELCYLETVNMNGKHKEFGGVERGDD---EAALLNPGNK 278
            LA ++E A L+EDAL +Y ELE+ + +  N +   +    V + +       +L+   K
Sbjct: 332 GLALIYERAQLYEDALMQYFELEVLFGDPNNRSQFDQITDEVLQPNSIHCNGNILDTSFK 391

Query: 279 ALTEIVQDDSFREFEFRQYLFACQSKLLFKLNRPFEVASRGYPFIISFSKALAQHEDILP 338
              +++ ++    F+F+ YLFA QSKLLF L +P E A++   FI S S  + Q+ +   
Sbjct: 392 NYRKLIYENKISLFDFKVYLFARQSKLLFLLQKPIEAATKSISFITSMSMIIKQYPNSFA 451

Query: 339 FCMREVWVITACLALIDATSSQYN 362
              +E W+ +  + LI A    ++
Sbjct: 452 PMFKESWIFSTSMELIKACQDSFD 475
May play a role in vesicular transport from endoplasmic reticulum to Golgi.
Dictyostelium discoideum (taxid: 44689)
>sp|Q3TLI0|TPC10_MOUSE Trafficking protein particle complex subunit 10 OS=Mus musculus GN=Trappc10 PE=2 SV=2 Back     alignment and function description
>sp|P48553|TPC10_HUMAN Trafficking protein particle complex subunit 10 OS=Homo sapiens GN=TRAPPC10 PE=1 SV=2 Back     alignment and function description
>sp|Q9VFB7|TPC10_DROME Trafficking protein particle complex subunit 10 OS=Drosophila melanogaster GN=SIDL PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1063
359493878 1259 PREDICTED: uncharacterized protein LOC10 0.993 0.838 0.813 0.0
302143059 1258 unnamed protein product [Vitis vinifera] 0.992 0.838 0.811 0.0
356549765 1258 PREDICTED: uncharacterized protein LOC10 0.995 0.841 0.793 0.0
449476735 1249 PREDICTED: trafficking protein particle 0.990 0.843 0.799 0.0
449464782 1249 PREDICTED: trafficking protein particle 0.990 0.843 0.799 0.0
356544004 1249 PREDICTED: uncharacterized protein LOC10 0.990 0.843 0.792 0.0
297796315 1259 hypothetical protein ARALYDRAFT_331786 [ 0.999 0.843 0.763 0.0
240256444 1259 protein CLUB [Arabidopsis thaliana] gi|3 0.999 0.843 0.759 0.0
2555695751043 conserved hypothetical protein [Ricinus 0.966 0.984 0.774 0.0
8885587 1280 unnamed protein product [Arabidopsis tha 0.999 0.829 0.733 0.0
>gi|359493878|ref|XP_002281921.2| PREDICTED: uncharacterized protein LOC100253761 [Vitis vinifera] Back     alignment and taxonomy information
 Score = 1816 bits (4703), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 869/1068 (81%), Positives = 960/1068 (89%), Gaps = 12/1068 (1%)

Query: 1    MANYLAQFQSIKSTCDRIVIAVEDVSDLWPTIQSGFEEQLPFKRACLNNKTRNPVFVEKL 60
            MANYLA FQ+IK++CDR+VIAVEDVSDLWP ++ GFEE+LPFKRACLNNKTRNPVFVEKL
Sbjct: 1    MANYLAHFQTIKNSCDRLVIAVEDVSDLWPAVKKGFEERLPFKRACLNNKTRNPVFVEKL 60

Query: 61   PAEFILTTDARLRSRFPQEQLLFWFREPYATVVLVTCEDLDEFKTILKPRLKLITQNDER 120
             AEFILTTD RLRSRFPQEQLLFWFREPYATVVLV+CEDLDEFKTILKPRLKLI QNDER
Sbjct: 61   AAEFILTTDPRLRSRFPQEQLLFWFREPYATVVLVSCEDLDEFKTILKPRLKLIVQNDER 120

Query: 121  EWFIVFVSKAHPNNDQANKMAKKVFAKLEVDFNSKKRERCCKFDIHGPEPNFWEDLESKV 180
            EW IVFVSKAHPNNDQA KMAKKV+A+LEVDF+SKKRERCCK DIH PE NFWEDLESK+
Sbjct: 121  EWCIVFVSKAHPNNDQATKMAKKVYARLEVDFSSKKRERCCKLDIHSPEANFWEDLESKI 180

Query: 181  MESIRNTLDRRVQFFEDEIRKLSELRFMPVWNFCNFFILKESLAFMFEMAHLHEDALREY 240
            MESIRNTLDRRVQF+EDEIRKLSE R MP+WNFCNFFILKESLAFMFEMAHLHED+LREY
Sbjct: 181  MESIRNTLDRRVQFYEDEIRKLSEQRLMPIWNFCNFFILKESLAFMFEMAHLHEDSLREY 240

Query: 241  DELELCYLETVNMNGKHKEFGGVERGDDEAALLNPGNKALTEIVQDDSFREFEFRQYLFA 300
            DELELCYLETVN+ GK ++FGG++RGDD+AALLNPGNK LT+IVQDDSFREFEFRQYLFA
Sbjct: 241  DELELCYLETVNVAGKQRDFGGIDRGDDQAALLNPGNKLLTQIVQDDSFREFEFRQYLFA 300

Query: 301  CQSKLLFKLNRPFEVASRGYPFIISFSKALAQHEDILPFCMREVWVITACLALIDATSSQ 360
            CQSKLLFKLNRPFEVASRGYPFIISFSKALA HE +LPFCMREVWV+TACLALI+AT+S 
Sbjct: 301  CQSKLLFKLNRPFEVASRGYPFIISFSKALALHERMLPFCMREVWVVTACLALINATASH 360

Query: 361  YNDGLAAPDIEKEFYRLLGDLYSLCRIKFMRLAYLIGHGTDIERSPVNSASLSMLPWPKP 420
            YNDG  APDIEKEFYR+ G+LYSLCR+KFMRLAYLIG+GT+IERSPVNSASLSML WP P
Sbjct: 361  YNDGFVAPDIEKEFYRIQGNLYSLCRVKFMRLAYLIGYGTEIERSPVNSASLSMLSWPMP 420

Query: 421  PVWPLVPADASAEVLAKEKLILQATPRVKHFGIHRKPLPLEPSVLLREANRRRASLSAGN 480
             VWP VP DAS+ VL KEK ILQATPRVKHFGI RKPLPLEPS+LLREANRRRASLSAGN
Sbjct: 421  AVWPPVPPDASSMVLEKEKTILQATPRVKHFGIQRKPLPLEPSILLREANRRRASLSAGN 480

Query: 481  MFEIF-------DGSGPDVSLRMSPSNKVQAVSMSRTNSSP-GFESSIDRPMRLAEIFVA 532
            M E+F       DGS  D SLRMSPS+KV A+SM+RTNSSP  FESSIDRPMRLAEI+VA
Sbjct: 481  MVEMFEGRPIFVDGSDSDASLRMSPSSKVHAISMTRTNSSPINFESSIDRPMRLAEIYVA 540

Query: 533  SEHALRQTISNPNLLKSLSSVEEFEQKYLELTKGAANNYHCSWWKRHGVVLDGEIAAVCF 592
            +EHAL+ TIS+ +L KSL SVEEFE+KYLELTKGAA+NYH SWWKRHGVVLDGEIAAVC+
Sbjct: 541  AEHALQNTISDTDLWKSLLSVEEFEKKYLELTKGAADNYHRSWWKRHGVVLDGEIAAVCY 600

Query: 593  KHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLSCVRLLSLDK 652
            +HGN+D AAKSYEKVCALY+GEGWQDLLAEVLP LAECQKILND+AGYL SCVRLLSLDK
Sbjct: 601  RHGNFDLAAKSYEKVCALYAGEGWQDLLAEVLPKLAECQKILNDQAGYLSSCVRLLSLDK 660

Query: 653  GLFSTKERQAFQSEVISLAYGEMKDPVPLDVSSLITFSGNPGPPLELCDGDPGTLSVTVW 712
            GLFSTKERQAFQSEV+ LA+ EMK PVPLDVSSLITFSGNPGPPLELCDGDPGTLSVTVW
Sbjct: 661  GLFSTKERQAFQSEVVRLAHSEMKHPVPLDVSSLITFSGNPGPPLELCDGDPGTLSVTVW 720

Query: 713  SGFPDDITVDTLSLTLMATYNADEGAKALNTSTATVLKPGRNTITVDLPPQKPGSYVLGA 772
            SGFPDDIT++ LSLTL A +N DEG KAL +S A +LKPGRNTIT+ LPPQKPGSYVLG 
Sbjct: 721  SGFPDDITLEVLSLTLAAIFNVDEGVKALRSSAAPILKPGRNTITLALPPQKPGSYVLGV 780

Query: 773  LTGHIGRLRFRSHSFSKVGPADSDDFMSYEKPTRPILKVFNPRPLVDLAAAISSPLLINE 832
            LTG IG+LRFRSHSFSK GPADSDDFMSYEKP RPILKV  PRPLVDLAAAISS LL+NE
Sbjct: 781  LTGQIGQLRFRSHSFSKGGPADSDDFMSYEKPARPILKVSKPRPLVDLAAAISSALLMNE 840

Query: 833  AQWVGIIVQPIDYSLKGAILQIDTGPGLTIEESHFVEMESHIKLS----NLENCHNIQKD 888
             QWVGIIV+PI+YSLKGA+L IDTGPGL IEESH +E+E H  +S    ++E+C   +K 
Sbjct: 841  PQWVGIIVRPINYSLKGAVLYIDTGPGLKIEESHPIEIERHSDVSQSATDMESCDQARKK 900

Query: 889  CSLDINKDFERLHLHDGRIQLPDWASNLTSILWIPIRAINNSLARGSSSVTPQRQSIVDG 948
             S  + ++F++L L +GRI+LPDWASN+TS++W PI AI++ LARG+SSVTPQRQSIVDG
Sbjct: 901  DSSVVIEEFKQLTLQNGRIELPDWASNITSVIWFPISAISDKLARGTSSVTPQRQSIVDG 960

Query: 949  MRTIALKLQFGVCHNQIFERTIAVHFTDPFHVSTRIADKCSDGTLLLQVILHSQVNASLT 1008
            MRTIALKL+FGV  NQ F+RT+AVHFTDPFHVSTR+ DKC+DGTLLLQV LHSQV A+LT
Sbjct: 961  MRTIALKLEFGVSLNQTFDRTLAVHFTDPFHVSTRVVDKCNDGTLLLQVTLHSQVKATLT 1020

Query: 1009 IYDAWLDLQDGFVHTRQGDGRPTSGFFPLVISSSSKAGILFSICLGKT 1056
            IYDAWL LQDGFVHT QGDGRPTS FFPLVI+ ++KAGILF ICLG T
Sbjct: 1021 IYDAWLVLQDGFVHTGQGDGRPTSDFFPLVIAPTAKAGILFCICLGTT 1068

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|302143059|emb|CBI20354.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356549765|ref|XP_003543261.1| PREDICTED: uncharacterized protein LOC100787264 [Glycine max] Back     alignment and taxonomy information
>gi|449476735|ref|XP_004154819.1| PREDICTED: trafficking protein particle complex subunit 10-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449464782|ref|XP_004150108.1| PREDICTED: trafficking protein particle complex subunit 10-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356544004|ref|XP_003540446.1| PREDICTED: uncharacterized protein LOC100782619 [Glycine max] Back     alignment and taxonomy information
>gi|297796315|ref|XP_002866042.1| hypothetical protein ARALYDRAFT_331786 [Arabidopsis lyrata subsp. lyrata] gi|297311877|gb|EFH42301.1| hypothetical protein ARALYDRAFT_331786 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|240256444|ref|NP_200255.5| protein CLUB [Arabidopsis thaliana] gi|332009113|gb|AED96496.1| protein CLUB [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|255569575|ref|XP_002525753.1| conserved hypothetical protein [Ricinus communis] gi|223534903|gb|EEF36589.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|8885587|dbj|BAA97517.1| unnamed protein product [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1063
TAIR|locus:2147324 1259 CLUB "AT5G54440" [Arabidopsis 0.998 0.842 0.750 0.0
DICTYBASE|DDB_G0273719 1442 trappc10-2 "trafficking protei 0.182 0.134 0.314 2.6e-48
DICTYBASE|DDB_G0273209 1442 trappc10-1 "trafficking protei 0.182 0.134 0.314 2.6e-48
MGI|MGI:1336209 1259 Trappc10 "trafficking protein 0.357 0.301 0.260 6.1e-33
UNIPROTKB|P48553 1259 TRAPPC10 "Trafficking protein 0.357 0.301 0.256 1.5e-29
ASPGD|ASPL0000058427 1433 AN1038 [Emericella nidulans (t 0.120 0.089 0.333 2e-18
FB|FBgn00383031145 SIDL "Shal Interactor of Di-Le 0.221 0.205 0.258 3.3e-13
TAIR|locus:2147324 CLUB "AT5G54440" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 4180 (1476.5 bits), Expect = 0., P = 0.
 Identities = 806/1074 (75%), Positives = 910/1074 (84%)

Query:     1 MANYLAQFQSIKSTCDRIVIAVEDVSDLWPTIQSGFEEQLPFKRACLNNKTRNPVFVEKL 60
             MANYLAQFQ+IK++CDR+V AVEDV DLWPT++  FEE  P KRA L NKTRNPVFVE L
Sbjct:     1 MANYLAQFQTIKNSCDRLVAAVEDVCDLWPTVKGLFEEHQPLKRAFLTNKTRNPVFVENL 60

Query:    61 PAEFILTTDARLRSRFPQEQLLFWFREPYATVVLVTCEDLDEFKTILKPRLKLITQNDER 120
             P EFILTTDARLRSRFPQEQ LFWFREPYAT+VLVTCEDLDEFK ILKPRLKLI QNDER
Sbjct:    61 PVEFILTTDARLRSRFPQEQYLFWFREPYATIVLVTCEDLDEFKNILKPRLKLIVQNDER 120

Query:   121 EWFIVFVSKAHPNNDQANKMAKKVFAKLEVDFNSKKRERCCKFDIHGPEPNFWEDLESKV 180
             EWFIVFVSKAHP+NDQA K  KKV+AKLEVDF+SKKRERCCK D+HGPE NFWEDLE K+
Sbjct:   121 EWFIVFVSKAHPSNDQATKNVKKVYAKLEVDFSSKKRERCCKLDVHGPEGNFWEDLELKI 180

Query:   181 MESIRNTLDRRVQFFEDEIRKLSELRFMPVWNFCNFFILKESLAFMFEMAHLHEDALREY 240
              E IRNTLDRR QF+EDEIRKLSE RFMP+WNFCNFFILKESLAF+FEMAHLHEDALREY
Sbjct:   181 TECIRNTLDRRAQFYEDEIRKLSEQRFMPIWNFCNFFILKESLAFIFEMAHLHEDALREY 240

Query:   241 DELELCYLETVNMNGKHKEFGGVERGDDEAALLNPGNKALTEIVQDDSFREFEFRQYLFA 300
             DELELCYLETVNM GK ++FGG +  DD+A LL PG+K LT+IVQDDSFREFEFRQYLFA
Sbjct:   241 DELELCYLETVNMPGKQRDFGGFDGEDDQAVLLKPGSKPLTQIVQDDSFREFEFRQYLFA 300

Query:   301 CQSKLLFKLNRPFEVASRGYPFIISFSKALAQHEDILPFCMREVWVITACLALIDATSSQ 360
             CQS+LLFKLNRPFEVASRGY F+ISF+KAL  HE +LPFCMREVWVITACLALI+AT+S 
Sbjct:   301 CQSRLLFKLNRPFEVASRGYSFVISFAKALTLHESVLPFCMREVWVITACLALIEATASH 360

Query:   361 YNDGLAAPDIEKEFYRLLGDLYSLCRIKFMRLAYLIGHGTDIERSPVNSASLSMXXXXXX 420
             ++DG+ APDIEKEF+RL GDLYSL R+KFMRL YLIG+GTDIE+SP+NSA LSM      
Sbjct:   361 HHDGVVAPDIEKEFFRLQGDLYSLSRVKFMRLGYLIGYGTDIEKSPLNSACLSMLPWPKP 420

Query:   421 XXXXXXXADASAEVLAKEKLILQATPRVKHFGIHRKPLPLEPSVLLREANRRRASLSAGN 480
                     DAS+EVL KEK ILQAT R KHFGI RK LPLEPSVLLR ANRRRASLS GN
Sbjct:   421 AVWPSLPQDASSEVLEKEKTILQATSRTKHFGIQRKALPLEPSVLLRVANRRRASLSTGN 480

Query:   481 MFEIFDG-------SGPDVSLRMSPSNKVQAVSMSRTNSSPG-FESSIDRPMRLAEIFVA 532
             + E+FDG       SG + S R   S KVQA  MSRTNSSPG FES +DRPMRLAEIFVA
Sbjct:   481 IPEMFDGRPSFTEGSGLEASPRTPSSLKVQAPPMSRTNSSPGNFESPLDRPMRLAEIFVA 540

Query:   533 SEHALRQTISNPNLLKSLSSVEEFEQKYLELTKGAANNYHCSWWKRHGVVLDGEIAAVCF 592
             +EHALR TIS+ +LLK+LSS+++FE KYL LTKGAA NYH SWWKRHGVVLDGEIAAVCF
Sbjct:   541 AEHALRLTISDHDLLKTLSSIQDFENKYLNLTKGAAENYHRSWWKRHGVVLDGEIAAVCF 600

Query:   593 KHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLSCVRLLSLDK 652
             KHG YD AA SYEKVCALY+GEGWQDLLAEVLPNLA+CQKIL+D+AGY+ SCVRLLSLDK
Sbjct:   601 KHGKYDLAANSYEKVCALYAGEGWQDLLAEVLPNLAQCQKILDDQAGYMSSCVRLLSLDK 660

Query:   653 GLFSTKERQAFQSEVISLAYGEMKDPVPLDVSSLITFSGNPGPPLELCDGDPGTLSVTVW 712
             GLFS+KERQAFQSEV++LA+ EMK+PVPLDVSSLITFSGN GPPL+LCDGDPG LSVTVW
Sbjct:   661 GLFSSKERQAFQSEVVTLAHSEMKNPVPLDVSSLITFSGNTGPPLQLCDGDPGNLSVTVW 720

Query:   713 SGFPDDITVDTLSLTLMATYNADEGAKALNTSTATVLKPGRNTITVDLPPQKPGSYVLGA 772
             SGFPDDIT+D+LSLTL+AT N DEG +AL +S ATVL PGRNTIT  LPPQKPGSYVLG 
Sbjct:   721 SGFPDDITLDSLSLTLVATNNTDEGGQALKSSAATVLNPGRNTITFALPPQKPGSYVLGV 780

Query:   773 LTGHIGRLRFRSHSFSKVGPADSDDFMSYEKPTRPILKVFNPRPLVDLAAAISSPLLINE 832
             +TG IGRLRFRSHSFSK GPADSDDFMSYEKPTRPILKV  PR LVDLAAA+SS LLINE
Sbjct:   781 VTGQIGRLRFRSHSFSKGGPADSDDFMSYEKPTRPILKVSKPRALVDLAAAVSSALLINE 840

Query:   833 AQWVGIIVQPIDYSLKGAILQIDTGPGLTIEESHFVEMESHIKL---SNLENCHNIQKDC 889
             AQW+GIIV+PI YSLKGAIL IDTGPGL IE+S+ +EME ++     +         +D 
Sbjct:   841 AQWIGIIVRPIAYSLKGAILHIDTGPGLKIEDSYGIEMERYMDADCDTGASKAEVFVEDS 900

Query:   890 SLDINKDFERLHLHDGRIQLPDWASNLTSILWIPIRAINNSLARGSSSVTPQRQSIVDGM 949
              +   +D E L+L DG+I   DWASN++SILW+P+RA++  LARGSSSVTP +Q I++GM
Sbjct:   901 PVSSKRDSEVLNLCDGKIVFSDWASNVSSILWVPVRALSEKLARGSSSVTPLKQDILEGM 960

Query:   950 RTIALKLQFGVCHNQIFERTIAVHFTDPFHVSTRIADKCSDGTLLLQVILHSQVNASLTI 1009
             RT+ALKL+FGV HNQIFERTIA HFTDPF V+TR+A+KC+DGTL+LQV+LHS V A+L +
Sbjct:   961 RTVALKLEFGVHHNQIFERTIAAHFTDPFDVTTRVANKCNDGTLVLQVMLHSLVKANLIV 1020

Query:  1010 YDAWLDLQDGFVHTRQGDGRPTSGFFPLVISSSSKAGILFSICLGKT-TPEGID 1062
              D WLDLQDGF+H  Q DGRPTS FFPLV+S  S+A ++FSICL K+ + EG D
Sbjct:  1021 LDVWLDLQDGFIHG-QNDGRPTSTFFPLVVSPGSRAAVVFSICLDKSMSSEGKD 1073
GO:0003674 "molecular_function" evidence=ND
GO:0005886 "plasma membrane" evidence=ISM
GO:0000910 "cytokinesis" evidence=IMP
GO:0000919 "cell plate assembly" evidence=IMP
DICTYBASE|DDB_G0273719 trappc10-2 "trafficking protein particle complex subunit 10" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0273209 trappc10-1 "trafficking protein particle complex subunit 10" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
MGI|MGI:1336209 Trappc10 "trafficking protein particle complex 10" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|P48553 TRAPPC10 "Trafficking protein particle complex subunit 10" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
ASPGD|ASPL0000058427 AN1038 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
FB|FBgn0038303 SIDL "Shal Interactor of Di-Leucine Motif" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1063
pfam11817215 pfam11817, Foie-gras_1, Foie gras liver health fam 7e-04
>gnl|CDD|221243 pfam11817, Foie-gras_1, Foie gras liver health family 1 Back     alignment and domain information 
 Score = 41.9 bits (99), Expect = 7e-04
 Identities = 23/68 (33%), Positives = 33/68 (48%)

Query: 583 LDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLL 642
           L  E+A    + G++ +A +  + V   Y  EGW  LL EVL  L EC +++ D    L 
Sbjct: 148 LSLEMAEEYLRLGDWSKALELLDPVALSYRKEGWWTLLEEVLWALRECARLVGDVKDVLA 207

Query: 643 SCVRLLSL 650
               LLS 
Sbjct: 208 VDWELLSR 215

Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first. The C-terminus of this region contains TPR repeats. Length = 215

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 1063
KOG1931 1156 consensus Putative transmembrane protein [General 100.0
KOG4386 809 consensus Uncharacterized conserved protein [Funct 99.87
PF07919 554 Gryzun: Gryzun, putative trafficking through Golgi 99.5
PF11817247 Foie-gras_1: Foie gras liver health family 1; Inte 99.41
PF08626 1185 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC 97.65
PF06159249 DUF974: Protein of unknown function (DUF974); Inte 97.25
PF14938282 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 95.78
PF1342478 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 93.66
KOG1953 1235 consensus Targeting complex (TRAPP) subunit [Intra 93.09
PRK10803263 tol-pal system protein YbgF; Provisional 91.89
PF12688120 TPR_5: Tetratrico peptide repeat 88.16
KOG1586288 consensus Protein required for fusion of vesicles 87.29
PF1342478 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 86.82
PF1317636 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ 86.71
PF1343265 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL 86.4
TIGR02795119 tol_pal_ybgF tol-pal system protein YbgF. Members 85.61
PF1455968 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN 84.73
PF1341469 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A 84.66
COG1729262 Uncharacterized protein conserved in bacteria [Fun 84.37
PF14938282 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 83.85
KOG1931 1156 consensus Putative transmembrane protein [General 83.35
PF1289584 Apc3: Anaphase-promoting complex, cyclosome, subun 82.49
PF1317433 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ 82.35
cd00189100 TPR Tetratricopeptide repeat domain; typically con 82.21
PF0771934 TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 81.08
PF1337442 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT 80.75
>KOG1931 consensus Putative transmembrane protein [General function prediction only] Back     alignment and domain information 
Probab=100.00  E-value=8.6e-109  Score=975.63  Aligned_cols=881  Identities=28%  Similarity=0.370  Sum_probs=678.3

Q ss_pred             hhccccCCeeEEEEeCCCCChHHHHHHHHhhCCCCceeeecCCCCCceeeeeeeeEEEccchhhccCCCcccccccccCc
Q 001515            9 QSIKSTCDRIVIAVEDVSDLWPTIQSGFEEQLPFKRACLNNKTRNPVFVEKLPAEFILTTDARLRSRFPQEQLLFWFREP   88 (1063)
Q Consensus         9 ~~~~~~~~~v~i~y~Dp~~lf~~i~~~l~~~lPl~nlhWk~~~~~~~~i~~L~v~fv~~~~~~~~~~~p~~~~~~l~~~P   88 (1063)
                      |.|+++|++.+|.|+||++||++|+++|++++||+|+||++++|+.++..+||++|+|+.++.+.+  .+.+.+.++..|
T Consensus         1 ~~i~~~~~kPIvty~d~~dLf~Sl~~~~eq~lPL~~~~W~~s~~r~~~~i~L~~efi~~~e~~l~~--~~~~d~sll~~P   78 (1156)
T KOG1931|consen    1 MDIEISCGKPIVTYFDPFDLFPSLRPEFEQILPLDNIEWRRSYGRVPKVIRLPIEFIPFGEEELDQ--DKSGDKSLLEFP   78 (1156)
T ss_pred             CchhhccCCceEEEeccccchhhhHHHHHhhcCCchhhhhhhcCcCCeEEEechhhhhhhhhhccc--cccCCchhhhCc
Confidence            579999999999999999999999999999999999999988887777667999999999988753  345678899999


Q ss_pred             eEEEEEEecCChHHHHHcchHHHHhhhc----CCCCceEEEEEcCCC-CCchhhhhhhHHHHHHHhhhcCCCCCceEEEe
Q 001515           89 YATVVLVTCEDLDEFKTILKPRLKLITQ----NDEREWFIVFVSKAH-PNNDQANKMAKKVFAKLEVDFNSKKRERCCKF  163 (1063)
Q Consensus        89 ~l~i~~v~C~d~d~Yks~vR~~ik~w~~----~~~~eWlIv~v~~~~-~~~~~~~k~~~svldKik~DF~~~~~dRc~~l  163 (1063)
                      |+||+||.|.|+|+||++|||+++.|++    ++.++||||+|..++ +++++...-.+||+||||.||++|+.|||+.|
T Consensus        79 ~l~i~~v~C~D~d~YKa~vr~~~~kWlk~l~s~~~~~WmIViV~~~a~rsn~~n~~~~~sv~dKir~DF~tkq~drCv~l  158 (1156)
T KOG1931|consen   79 FLHILIVECIDIDQYKATVRPLVTKWLKNLESNSSSDWMIVIVEYAAKRSNDSNLFPVKSVMDKIRKDFPTKQTDRCVSL  158 (1156)
T ss_pred             eeEEEEEecccHHHHHHhcchHHHHHHHHhhhcCCcceEEEEEeccccccccccccchhhHHHHHhcccCCCCcceeEEe
Confidence            9999999999999999999999999987    689999999999653 33443223346999999999999999999999


Q ss_pred             ccCC---CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCchHHHHHHHHHHHHHHHHhcchHHHHHHH
Q 001515          164 DIHG---PEPNFWEDLESKVMESIRNTLDRRVQFFEDEIRKLSELRFMPVWNFCNFFILKESLAFMFEMAHLHEDALREY  240 (1063)
Q Consensus       164 ~~~~---~~~e~W~~li~klK~~iL~sFd~rv~~yee~ir~~~~~r~~p~WnF~~~FilKE~LA~~fe~~~L~edAL~~Y  240 (1063)
                      +.+.   +++|+||+|++|||.++|++||+|+.+|||+||.++++|++||||||+||++||+||++|||++|+||||.||
T Consensus       159 ~~~~k~~~~~e~Wn~f~qki~~~vLss~dkr~~~~ee~iRslre~r~~~~wdF~~fFl~kE~LA~iFe~l~l~edAL~qy  238 (1156)
T KOG1931|consen  159 DRPPKERQEAEFWNQFLQKIRALVLSSLDKRLTKLEESIRSLREKRNSPGWDFCEFFLTKEKLAFIFEMLNLLEDALLQY  238 (1156)
T ss_pred             ecCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence            7642   3457999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhh-cc-CC-cccCCCCCCCCCc---cccCCCCChhhHHhhhcCCCchhhhHhhHHHHHHHHHHhhCChHH
Q 001515          241 DELELCYLETVN-MN-GK-HKEFGGVERGDDE---AALLNPGNKALTEIVQDDSFREFEFRQYLFACQSKLLFKLNRPFE  314 (1063)
Q Consensus       241 dEL~~~~~~~~~-~~-~~-~~~f~~~~~~dd~---~~~l~~~~k~~r~li~~~~islfdfr~YlFsrQ~~LL~~l~~~~e  314 (1063)
                      |||+++|++.+. .+ |+ +.|||+++.+||.   +.++-+++++.++.|+++.+++|+||.|||+||+.||++++|++|
T Consensus       239 del~a~~sq~i~~~g~~k~q~~l~~f~kpd~s~~g~~ll~~gs~~~~q~i~d~~ftl~efR~yLf~~Q~~Lll~lnrp~e  318 (1156)
T KOG1931|consen  239 DELDAEFSQRIMNMGDGKLQVWLGSFSKPDDSLFGGSLLIPGSLEKTQHIQDKYFTLFEFRLYLFERQTLLLLKLNRPFE  318 (1156)
T ss_pred             HHHHHHHHHHHhcCCCccccccccccCCchhhhcCceEEecCchHHHHhhhcCceeeehHHHHHHHHHHHHHHhcCCcHH
Confidence            999999999995 44 23 7999999988885   678889999999999999999999999999999999999999999


Q ss_pred             HhhchHHHHHHHHHHHHhccccccccchhHHHHHHHHHHHHHhhcccCCCCCCCchhHHHHhhhhhHHHHHHHHHHHHHH
Q 001515          315 VASRGYPFIISFSKALAQHEDILPFCMREVWVITACLALIDATSSQYNDGLAAPDIEKEFYRLLGDLYSLCRIKFMRLAY  394 (1063)
Q Consensus       315 v~~r~~~fi~~~~~~l~~~e~~l~~~~~~~w~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~a~~~l~~l~~  394 (1063)
                      ||+|+++|+.++++.+..++.+++.+++.||+|.+|+++++.|..   .+-..|+..+++-++++++|++|+.+|+++|.
T Consensus       319 va~r~~e~l~s~lqel~Ll~~s~~~~~~~~w~i~a~L~~~e~~~~---~~~~~~n~~t~~~~~~~~iw~~ar~kL~~m~~  395 (1156)
T KOG1931|consen  319 VASRAYELLFSFLQELSLLESSVPLGALKCWEITAALEYLEFTEV---SGPLLPNIKTELFMLCADIWSYARMKLYGMAL  395 (1156)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHhhc---cccccccccchHHHHhhhHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999982   23345666678899999999999999999999


Q ss_pred             HhcCCCCCCCCCcccccccCCCCCCCCCCCCCCCCchhHHHHHHhhhhccCCcccccccCCCCCCCCchHHHHHHHHhhh
Q 001515          395 LIGHGTDIERSPVNSASLSMLPWPKPPVWPLVPADASAEVLAKEKLILQATPRVKHFGIHRKPLPLEPSVLLREANRRRA  474 (1063)
Q Consensus       395 ~~g~~~~~~~~p~rssSl~~~~~p~p~~~p~~p~~~~~~~l~~~~~~~~~~~~s~~~~~~R~eL~~~~r~lLee~~~rr~  474 (1063)
                      .||..++.            .  |.          -.+++++.                          -         .
T Consensus       396 ~~~li~d~------------~--p~----------~~se~l~~--------------------------~---------~  416 (1156)
T KOG1931|consen  396 LCGLIPDS------------D--PN----------YKSEQLKE--------------------------T---------F  416 (1156)
T ss_pred             HhccCCCC------------C--CC----------ccccccce--------------------------E---------e
Confidence            99996652            0  10          01222210                          0         0


Q ss_pred             hhccCccccccCCCCCCccccCCCCcccccccccccCCCCCCCCCCCcchhhhHHHHhhhhhhccCCChhHHHHhhcCHH
Q 001515          475 SLSAGNMFEIFDGSGPDVSLRMSPSNKVQAVSMSRTNSSPGFESSIDRPMRLAEIFVASEHALRQTISNPNLLKSLSSVE  554 (1063)
Q Consensus       475 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~L~~AL~S~e  554 (1063)
                      .+..|        .|+...                    +...+                    +.-.+.++++|+.+..
T Consensus       417 ~~~~~--------l~d~r~--------------------~~~ke--------------------~~S~~~k~~~~~~~~~  448 (1156)
T KOG1931|consen  417 VLSTG--------LLDNRP--------------------TLTKE--------------------ALSLFNKLEEALQRIV  448 (1156)
T ss_pred             eehhh--------hhhccc--------------------Ccchh--------------------hhhhHHHHHHHHHHHH
Confidence            00111        111100                    00000                    0114689999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCeehhHHhhHHHHHHHhhcCCHHHHHHHHHHHHhhhhhCCcchHHHHHHHHHHHHHHHh
Q 001515          555 EFEQKYLELTKGAANNYHCSWWKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKIL  634 (1063)
Q Consensus       555 ~F~~~Y~~Lt~~Ai~~y~~a~R~Rsa~~L~~dLA~l~y~~gdY~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~ClkkL  634 (1063)
                      +|.++|+++.+.++..|+++.|.|.|..++.|+|++|...+.+++|..++.++...+..++|....+.++..++.|++.|
T Consensus       449 s~~k~~~~l~~~~~~~y~~~~rl~~ar~~~~d~~N~y~~~~~p~~~v~~~t~~~k~~~~e~wa~~~s~t~~~l~~f~~~L  528 (1156)
T KOG1931|consen  449 SFLKHYLGLLKAQISKYEEAVRLRLARYVGLDLGNFYSILKIPQKAVDSLTHCLKLDLLEIWAEPVSATLVLLANFLNIL  528 (1156)
T ss_pred             HHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcchhhhHhhhcccchhhhhhhccCcchhhhhccchhHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cchhhHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHhcCCCCC------------cccc-cCcceeeecCCC-------
Q 001515          635 NDEAGYLLSCVRLLSLDKGLFSTKERQAFQSEVISLAYGEMKDP------------VPLD-VSSLITFSGNPG-------  694 (1063)
Q Consensus       635 ~~~~eYv~~~l~LLs~~~~~~s~~~R~~~~~ell~~~~~~l~~~------------~~~~-l~~~~~~~~~~~-------  694 (1063)
                      +...+|.+++.-+.+.  ..+.+..|.+++.+++++..--..+.            +.++ +...++......       
T Consensus       529 ~~~~~~~k~~~~ia~~--~~L~~~~r~h~~~k~l~~~~~~~~s~~hl~~~~~~n~~v~~~~h~~v~Diev~~~~~~~~~~  606 (1156)
T KOG1931|consen  529 GLCKAYDKTESSIAKF--HDLQELNRKHLMYKLLGLFEVFLNSKVHLARANVHNYEVNLDSHGFVLDIEVVTMKVKCMDG  606 (1156)
T ss_pred             HHHHhhhhhhhHHHhh--HHHHHHHHHHHHHHHHhHHHhhhcchhhhhcccchhhhhhhhhccccceeEEeeccceeecc
Confidence            9999999998855543  33556678899999987664110000            0000 000000000000       


Q ss_pred             ------C-Ccc-----------ccC---CCCe---EEEEEEE------------------------eCCCCceE------
Q 001515          695 ------P-PLE-----------LCD---GDPG---TLSVTVW------------------------SGFPDDIT------  720 (1063)
Q Consensus       695 ------~-~~~-----------~~~---~d~~---~L~V~l~------------------------s~lP~~I~------  720 (1063)
                            | +..           +|.   .+.+   +..|.+.                        +.-|.+.+      
T Consensus       607 ~~~s~~~v~~L~~~~~v~~~~~~C~di~~~~~~l~s~~v~l~gi~~~~~~~~~q~e~~s~~~iem~~~tk~dn~l~~~~~  686 (1156)
T KOG1931|consen  607 DVISQGPVDFLYKSIVVNKLILECRDIMYGEAELLSFEVILEGITFVKEFPVNQDELISLPEIEMKNPTKVDNSLQAHGL  686 (1156)
T ss_pred             eeeeccchHhhHhhhhhhhHHHHHHhhccchhhheeeeeEeeccccccccccchhhhccchhheeecCccccchhhhhhh
Confidence                  0 000           000   0000   1122222                        11111111      


Q ss_pred             -----eeEEEEEEEec------ccCCCCceEEeecCceEeeCCccEEEEEcCCCcCeeEEEEEEEEEEcceEEEeccccC
Q 001515          721 -----VDTLSLTLMAT------YNADEGAKALNTSTATVLKPGRNTITVDLPPQKPGSYVLGALTGHIGRLRFRSHSFSK  789 (1063)
Q Consensus       721 -----~d~v~l~L~~~------~~~~~~~~~l~s~~~~~L~PG~Nki~L~~~~~~~G~y~l~~l~i~ig~l~F~s~~f~~  789 (1063)
                           -.+++++.+++      ....++..-.-+..++.|.||.|.+++..++..+|.|...+++.++|.+.|+++.+. 
T Consensus       687 ~c~~~~~~l~~~~s~s~~~~~s~v~~ee~~~~~s~s~v~Lspg~N~i~~~~~~~~~g~~~~~~L~~qi~sl~f~~~q~~-  765 (1156)
T KOG1931|consen  687 NCDEYASKLSVQQSSSLESLQSPVEVEEGIGNMSCSPVSLSPGENQITFRLNAPFPGVYLLYQLCDQIGSLDFISKQSF-  765 (1156)
T ss_pred             ccccchhhcceeecccccccccchhhhcccccccccceeeccCcceeEEecCCCCCCeeeehhhhcccceEEEEccccC-
Confidence                 11112211111      000111112235678899999999999999999999999999999999999965332 


Q ss_pred             CCCCCCCCcccccCCCCCeEEEEcCCCccceEeeecCccccCCceEEEEEEEcCcccc-cceEEEEecCCCCccccccce
Q 001515          790 VGPADSDDFMSYEKPTRPILKVFNPRPLVDLAAAISSPLLINEAQWVGIIVQPIDYSL-KGAILQIDTGPGLTIEESHFV  868 (1063)
Q Consensus       790 ~~~~~~~~~~~~e~~~~p~i~v~~~~~~~~L~a~~~~P~Li~~~q~V~l~I~sg~~~i-~~~~L~l~~s~gl~i~~~~~~  868 (1063)
                        |+..+|.++++    |...+.+   ..+        .+.|+.|+|..++..|...| .++.+++.|.....+..+.+.
T Consensus       766 --~~~k~d~~s~~----P~~~~~~---l~~--------lla~I~q~v~~~~~g~i~~i~~~~~l~l~ce~~~~m~~~~~T  828 (1156)
T KOG1931|consen  766 --PTKKNDQGSTE----PETKKER---LQC--------LLAGIVQSVEDIVKGGILHIKNGLNLSLRCEKEVRMRSSENT  828 (1156)
T ss_pred             --CcccccccccC----Cccccch---HHH--------HHhhcceeeeeEEeccEEEecCCCcceEEecccceecccccc
Confidence              66666666666    3222221   122        55669999999999999888 688888888777777665542


Q ss_pred             eccccccccccccccCccccccccccchhhhccccccccccCCCCCCceeeEeEeeEeecccccCCccccCCcccccccc
Q 001515          869 EMESHIKLSNLENCHNIQKDCSLDINKDFERLHLHDGRIQLPDWASNLTSILWIPIRAINNSLARGSSSVTPQRQSIVDG  948 (1063)
Q Consensus       869 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  948 (1063)
                      ++     .++...          +.+..++.+ +.-+.+...+++.......++|+.+..+   .|.+++          
T Consensus       829 ~~-----~ae~~~----------~d~~~~~s~-~~~p~~~~~d~e~~~~~~~~ip~l~~~d---~~ss~h----------  879 (1156)
T KOG1931|consen  829 TI-----FAEAAR----------NDKNIFESL-LCTPKLIFFDFEESFISLYEIPVLNGFD---CFSSDH----------  879 (1156)
T ss_pred             cc-----cccccc----------cCccchhhh-ccccceEEecchhcccccccccccCCcc---cccccc----------
Confidence            21     111111          012223333 6668888899998888888888886555   233322          


Q ss_pred             ceeEEEEeeccccccceeeeeEEEEeeCCeeEEEEeeeccCCcceEEEEEEccccceeEEEeeeeeeecCCcccccccCC
Q 001515          949 MRTIALKLQFGVCHNQIFERTIAVHFTDPFHVSTRIADKCSDGTLLLQVILHSQVNASLTIYDAWLDLQDGFVHTRQGDG 1028 (1063)
Q Consensus       949 ~~~~~~~~~~~~~~~~~~~~~i~l~f~~Pf~~s~~~~s~~~~~~~~l~v~l~s~s~~~l~i~~~~l~~~~~~~~~~~~~~ 1028 (1063)
                         ..+++.++ |+|+.||+.|+.+|..||+|++|+++.|+|+.-+|||++|+.+.+.+...+.++.+.+|+.|..+ ++
T Consensus       880 ---~~~kvsin-~~~s~~e~~IA~~f~~~~~vt~~l~~~~~~~~~~lqvl~~~~~~~~l~~~~~~l~~~~~~i~~q~-~~  954 (1156)
T KOG1931|consen  880 ---FNLKVSIN-LPFSQLELFIADAFLIPFDVTWRLLFECGDTFKELQVLKHLLYDYDLFKEDQILVLLPGEIRKQN-DL  954 (1156)
T ss_pred             ---ccceeEec-cchhhhheehhhheecccceeEeeehhcCcceeeHHHHHHHHHHhhhhhhceEEEecCcchhhhc-CC
Confidence               34445555 66777888999999999999999999999966699999999999999999999999999988554 56


Q ss_pred             CCCCCcCceeeccCCeeeEEEEEecCCCC
Q 001515         1029 RPTSGFFPLVISSSSKAGILFSICLGKTT 1057 (1063)
Q Consensus      1029 ~p~~~~~~~~~~~~~~a~~~~~l~~~~~~ 1057 (1063)
                      ++++++||++.  .+++.+-|++.|-.+|
T Consensus       955 ~~t~S~~p~~~--~~s~~~~~il~~~~ep  981 (1156)
T KOG1931|consen  955 LNTKSFFPNEC--IESVVFDKILICLNEP  981 (1156)
T ss_pred             CCccccccHHH--HHHHHHHHHHHHhcCC
Confidence            66668889765  5566666666665553

>KOG4386 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF07919 Gryzun: Gryzun, putative trafficking through Golgi; InterPro: IPR012880 The proteins featured in this family are all hypothetical eukaryotic proteins of unknown function Back     alignment and domain information
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease [] Back     alignment and domain information
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway Back     alignment and domain information
>PF06159 DUF974: Protein of unknown function (DUF974); InterPro: IPR010378 This is a family of uncharacterised eukaryotic proteins Back     alignment and domain information
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A Back     alignment and domain information
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H Back     alignment and domain information
>KOG1953 consensus Targeting complex (TRAPP) subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PRK10803 tol-pal system protein YbgF; Provisional Back     alignment and domain information
>PF12688 TPR_5: Tetratrico peptide repeat Back     alignment and domain information
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H Back     alignment and domain information
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A Back     alignment and domain information
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B Back     alignment and domain information
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF Back     alignment and domain information
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A Back     alignment and domain information
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A Back     alignment and domain information
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A Back     alignment and domain information
>KOG1931 consensus Putative transmembrane protein [General function prediction only] Back     alignment and domain information
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A Back     alignment and domain information
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A Back     alignment and domain information
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C Back     alignment and domain information
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] Back     alignment and domain information
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1063
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-08
1vt4_I1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-07
1kt0_A457 FKBP51, 51 kDa FK506-binding protein; FKBP-like pp 2e-05
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 64.1 bits (155), Expect = 2e-10
 Identities = 81/630 (12%), Positives = 178/630 (28%), Gaps = 164/630 (26%)

Query: 17  RIVIAVEDVSDLWPTIQSGFEEQLPFKRACLNNKTRNPV--FVEKLPA---EFILTTDAR 71
           + +++ E++  +   +              L +K    V  FVE++     +F+++    
Sbjct: 43  KSILSKEEIDHI--IMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMS---P 97

Query: 72  LRSRFPQEQLLFWFREPYATVVLVTCEDLDEFKTILKPRLKLITQNDEREWFIVFVSKAH 131
           +++   Q  ++      Y         D   F      RL+   +   R+     + +  
Sbjct: 98  IKTEQRQPSMM---TRMYIEQRDRLYNDNQVFAKYNVSRLQPYLK--LRQA----LLELR 148

Query: 132 PNNDQA-NKMA---KKVFAKLEVDFNSKKRERCCKFDIHGPEPNFWEDL-----ESKVME 182
           P  +   + +    K   A L+V   S K +    F I      FW +L        V+E
Sbjct: 149 PAKNVLIDGVLGSGKTWVA-LDV-CLSYKVQCKMDFKI------FWLNLKNCNSPETVLE 200

Query: 183 SIRNTLDRRVQFFEDEIRKLSELRFMPVWNFCNFFILKESLAFMFEMAHLHEDALREYDE 242
            ++  L +    +       S ++            ++  L  +   +  +E+ L     
Sbjct: 201 MLQKLLYQIDPNWTSRSDHSSNIKLRIHS-------IQAELRRLL-KSKPYENCLLVLL- 251

Query: 243 LELCYLETVNMNGKHKEFGG------VERGDDEAALLNPGNKALTEIVQDD---SFREFE 293
             +   +  N       F          R       L+      T I  D    +    E
Sbjct: 252 -NVQNAKAWNA------FNLSCKILLTTRFKQVTDFLSAATT--THISLDHHSMTLTPDE 302

Query: 294 FRQYLFACQSKLLFKLNRPFEVASRGYPFIISFSKALAQHEDILPFCMREVWVITACLAL 353
            +  L          L  P E      P  +S      +          + W    C  L
Sbjct: 303 VKSLLLKYLDCRPQDL--PRE-VLTTNPRRLSIIAESIRDG----LATWDNWKHVNCDKL 355

Query: 354 IDATSSQYNDGLAAPDIEKEFYRLLGDLYSLCRIKFMRLAYLIGHGTDIERSPVNSASLS 413
                S  N  L  P   ++ +  L        + F               + + +  LS
Sbjct: 356 TTIIESSLNV-L-EPAEYRKMFDRLS-------V-FP------------PSAHIPTILLS 393

Query: 414 MLPWPKPPVWPLVPADASAEVLAK--EKLILQATPRVKHFGIH------RKPLPLEPSV- 464
           ++       W  V       V+ K  +  +++  P+     I       +  L  E ++ 
Sbjct: 394 LI-------WFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALH 446

Query: 465 --LLREANRRRAS---------------------LSAGNMFEIFDG-------------- 487
             ++   N  +                       L      E                  
Sbjct: 447 RSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQK 506

Query: 488 ---SGPDVSLRMSPSNKVQAVSMSR---TNSSPGFESSIDRPM----RLAEIFVASEHA- 536
                   +   S  N +Q +   +    ++ P +E  ++  +    ++ E  + S++  
Sbjct: 507 IRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTD 566

Query: 537 -LRQTISNPNLLKSLSSVEEFEQKYLELTK 565
            LR  +   +      ++  FE+ + ++ +
Sbjct: 567 LLRIALMAED-----EAI--FEEAHKQVQR 589
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1063
d1tjca_95 Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human 93.52
d1qqea_290 Vesicular transport protein sec17 {Baker's yeast ( 93.41
>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.52  E-value=0.16  Score=24.59  Aligned_cols=68  Identities=21%  Similarity=0.127  Sum_probs=54.8

Q ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCC
Q ss_conf             88899996418989999999999966610895-107998999999999982451329999999821377
Q 001515          585 GEIAAVCFKHGNYDQAAKSYEKVCALYSGEGW-QDLLAEVLPNLAECQKILNDEAGYLLSCVRLLSLDK  652 (1063)
Q Consensus       585 ~dLA~lyy~~gdY~kA~~~l~~~~~~Y~~egW-~~L~~~iL~~~a~ClkkL~~~~eYv~~~l~LLs~~~  652 (1063)
                      .+||..+|+.|||.+|...|..++.....+.. +.-...+|..++.|..++++.++=+...-+.|...+
T Consensus         9 ~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P   77 (95)
T d1tjca_           9 FELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDP   77 (95)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC
T ss_conf             999999999779999999999999988653014764789999872688865773988878877988692
>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure