Citrus Sinensis ID: 001522

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060
Protein Sequence
MKNCDNNKEELRLAESKKEILRRSYDLAHAQANSVLNFTVQWKDLEEHLDISMKSLEKQSNDADSKIRLLDQRAKEIESKESDLVLAERRIKECNFELACKEKQLELVRKRIGECECELQLKEGELNLVKKSVEEWLEKLDLKMKEVGLVEKSNDKSLVDQRRLENLIKDFCEQIELKEKDLRKIRSSIEECEKELVMKEKHASSLQSLIEDYAEELESKEKLYDEIKKSIIQCETKLDCKKKELELTQTSIIELSLELHLEEEKLESLQRIVRLRENELDSKEEKLDAMKEEMKKYFNDIELKEREFNGIRKCIEKRSQELTLKEKQLKCVQESLEGCRNEFEEKENELISVEKLIDKCSEELELKKKHLCVIENSAAELSDECESNELELDLIQTMAIGYLKQLKEKEKQFHSLKEALDERWQDLEIKERKFEERVKEFELREKEIESIRKAVEDRSKNLELKEKKLSNNLHLQVKIEQPESLKGNEGTKQLSLQSCTMITGKNLQLLLNQHLQKHDLVFGEISHTLTKACDPASLVLDAMEGFYPPHSREGDMEFDVSIIRRTCILLLEQLSSVTPEINPQVRDEAMKVAGEWKKKMRVAEDNSLEVLGFLHLLAAYGLGPSFDGIELESLLDIVAQHRQTSKLRQSLGFAEKAHGLQCSTTREARSCLSLLNKHDLGHNEVLQLLHLAPDPAMFVLDFIQHWKSQGTGFEEDNVKCCILVLEKLKEVLPIMNPRVKGEAMKLAVEWKTKMGVGTLNSLEVLVFLQLLGTFELVASFNRVEIVELLWTISEHKQAPETCRALGFTDIVANFVRNLIGRKKHIAAIRFICAFKLTDIAKPEAIFKQYLDDNISDIHRKGNNSSDAKVKAMDFEVNALTFLIECFKENKLESSLLIENIKQRIVQLEMAKADCRRHSTPAPSATIQLQLASRNNYNIGTSTPTNQPVPSHTNQPQHSGINHSIGFSASREQPQLQNNYKRPRIEPLTTRAYMPQIPASVNLHRSSPTMQHGPGVALSGGQMQFDHIASNHLRVRANMGAGQTSNVTGNQNLHHFQYKYF
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHccccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHcccccHHHHHHHHHHccccccHHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHHHHccccHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHcccccccHHHccccccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHcccccHccHHHHHHHHHHHHHHHHHHHHHHHcccHHHcHHHHHHHHHcccHHHHHHHHHHccHHHHHHHHHHcccHHHHHHHHHHcHccccccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHccccHccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccHHHHHHHHHcccHcccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHcccccccccccccccEEEEcccc
Coil and Loop (DISEMBL)
MKNCDNNKEELRLAESKKEILRRSYDLAHAQANSVLNFTVQWKDLEEHLDISMKSLEKQSNDADSKIRLLDQRAKEIESKESDLVLAERRIKECNFELACKEKQLELVRKRIGECECELQLKEGELNLVKKSVEEWLEKLDLKMKEVGLveksndkslVDQRRLENLIKDFCEQIELKEKDLRKIRSSIEECEKELVMKEKHASSLQSLIEDYAEELESKEKLYDEIKKSIIQCETKLDCKKKELELTQTSIIELSLELHLEEEKLESLQRIVRLRENELDSKEEKLDAMKEEMKKYFNDIELKEREFNGIRKCIEKRSQELTLKEKQLKCVQESLEGCRNEFEEKENELISVEKLIDKCSEELELKKKHLCVIENSaaelsdecesneLELDLIQTMAIGYLKQLKEKEKQFHSLKEALDERWQDLEIKERKFEERVKEFELREKEIESIRKAVEDRSKNLELKEKKLSNNLHLQvkieqpeslkgnegtkqlsLQSCTMITGKNLQLLLNQHLQKHDLVFGEISHtltkacdpaslvldamegfypphsregdmefDVSIIRRTCILLLEQlssvtpeinpqVRDEAMKVAGEWKKKMRVAEDNSLEVLGFLHLLAAyglgpsfdgiELESLLDIVAQHRQTSKLRQSlgfaekahglqcsttREARSCLSLlnkhdlghnEVLQllhlapdpamFVLDFIQHwksqgtgfeednvKCCILVLEKLKEVlpimnprvKGEAMKLAVEWKTkmgvgtlnSLEVLVFLQLLGTFELVASFNRVEIVELLWTISehkqapetcralGFTDIVANFVRNLIGRKKHIAAIRFICAfkltdiakpEAIFKQYLDdnisdihrkgnnssdakVKAMDFEVNALTFLIECFKENKLESSLLIENIKQRIVQLEMAKadcrrhstpapsaTIQLQLAsrnnynigtstptnqpvpshtnqpqhsginhsigfsasreqpqlqnnykrprieplttraympqipasvnlhrssptmqhgpgvalsggqmqfdhIASNHLRVRanmgagqtsnvtgnqnlhhfqykyf
Flexible Loop (DISEMBL)
mkncdnnkeeLRLAESKKEILRRSYDLAHAQANSVLNFTVQWKDLEEHLDISMKSlekqsndadsKIRLLDQRAkeieskesdlvlaERRIKECNFELACKEKQLELVRKRIGECECelqlkegelnlvKKSVEEWLEKLDLKMkevglveksndkslvdqRRLENLIKDFceqielkekdlrKIRSSIEECEKELVMKEKHASSLQSLIEDYAEELESKEKLYDEIKKSIIQCETKLDCKKKELELTQTSIIELSLELHLEEEKLESLQRIVRlreneldskeeklDAMKEEMKKYFndielkerefnGIRKCIEKRsqeltlkekQLKCVQESLEGCRNEFEEKENELISVEKLIDKCSEELELKKKHLCVIENSAAELSDECESNELELDLIQTMAIGYLKQLKEKEKQFHSLKEalderwqdleikerkfeervkefelrekEIESIRKavedrsknlelkekklsnnlhlqvkieqpeslkgnegTKQLSLQSCTMITGKNLQLLLNQHLQKHDLVFGEISHTLTKACDPASLVLDAMEGFYPPHSREGDMEFDVSIIRRTCILLLEQlssvtpeinpqvrDEAMKVAGEWKKKMRVAEDNSLEVLGFLHLLAAYGLGPSFDGIELESLLDIVAQHRQTSKLRQSLGFAEKAHGLQCSTTREARSCLSLLNKHDLGHNEVLQLLHLAPDPAMFVLDFIQHWKSQGTGFEEDNVKCCILVLEKLKevlpimnprvKGEAMKLAVEWKTKMGVGTLNSLEVLVFLQLLGTFELVASFNRVEIVELLWTISEHKQAPETCRALGFTDIVANFVRNLIGRKKHIAAIRFICAFKLTDIAKPEAIFKQYLDDNISDIHRKGNNSSDAKVKAMDFEVNALTFLIECFKENKLESSLLIENIKQRIVQLEMAKADCRRHSTPAPSATIQLQLASRNNYNIGTSTPTNQPVPSHTNQPQHSGINHSIGFSASREQPQLQNNYKRPRIEPLTTRAYMPQIPASVNLHRSSPTMQHGPGVALSGGQMQFDHIASNHLRVRANMGAGqtsnvtgnqnlhHFQYKYF
Low Complexity Region (SEG)
MKNCDNNKEELRLAESKKEILRRSYDLAHAQANSVLNFTVQWKDLEEHLDISMKSLEKQSNDADSKIRLLDQRAKEIESKESDLVLAERRIKECNFELACKEKQLELVRKRIGECECELQLKEGELNLVKKSVEEWLEKLDLKMKEVGLVEKSNDKSLVDQRRLENLIKDFCEQIELKEKDLRKIRSSIEECEKELVMKEKHASSLQSLIEDYAEELESKEKLYDEIKKSIIQCETKLDCKKKELELTQTSIIelslelhleeekleslQRIVRLRENELDSKEEKLDAMKEEMKKYFNDIELKEREFNGIRKCIEKRSQELTLKEKQLKCVQESLEGCRNEFEEKENELISVEKLIDKCSEELELKKKHLCVIENSAAELSDECESNELELDLIQTMAIGYLKQLKEKEKQFHSLKEALDERWQDLeikerkfeervkefelrekeIESIRKAVEDRsknlelkekklsnnlHLQVKIEQPESLKGNEGTKQLSLQSCTMITGknlqlllnqhlqkhDLVFGEISHTLTKACDPASLVLDAMEGFYPPHSREGDMEFDVSIIRRTCILLLEQLSSVTPEINPQVRDEAMKVAGEWKKKMRVAEDNSLEVLGFLHLLAAYGLGPSFDGIELESLLDIVAQHRQTSKLRQSLGFAEKAHGLQCSTTREARSCLSLLNKHDLGHNEVLQLLHLAPDPAMFVLDFIQHWKSQGTGFEEDNVKCCILVLEKLKEVLPIMNPRVKGEAMKLAVEWKTKMGVGTLNSLEVLVFLQLLGTFELVASFNRVEIVELLWTISEHKQAPETCRALGFTDIVANFVRNLIGRKKHIAAIRFICAFKLTDIAKPEAIFKQYLDDNISDIHRKGNNSSDAKVKAMDFEVNALTFLIECFKENKLESSLLIENIKQRIVQLEMAKADCRRHSTPAPSATIQLQLASRNNYNIGTSTPTNQPVPSHTNQPQHSGINHSIGFSASREQPQLQNNYKRPRIEPLTTRAYMPQIPASVNLHRSSPTMQHGPGVALSGGQMQFDHIASNHLRVRANMGAGQTSNVTGNQNLHHFQYKYF
Disordered region (IsUnstruct)
*********************RRSYDLAHAQANSVLNFTVQWKDLEEHL**********************************LVLAERRIKECNFELACKEKQLELVRKRIGECECELQLKEGELNLVKKSVEEWLEKLDLKMKEVGLVE******LVDQRRLENLIKDFCEQIELKE******************************************KLYDEIKKSIIQCETKLDCKKKELELTQTSIIELSLELHLEE*********************************YFNDIELKEREFNGIRKCIE************LKCVQ**L**C*********ELISVEKLIDKCSEELELKKKHLCVIENSAAELSDECESNELELDLIQTMAIGYLKQLK****************W***********************************************************************LQSCTMITGKNLQLLLNQHLQKHDLVFGEISHTLTKACDPASLVLDAMEGFYPPHSREGDMEFDVSIIRRTCILLLEQLSSVTPEIN******AMKVAGEWKKKMRVAEDNSLEVLGFLHLLAAYGLGPSFDGIELESLLDIVAQHRQTSKLRQSLGFAEKAHGLQCSTTREARSCLSLLNKHDLGHNEVLQLLHLAPDPAMFVLDFIQHWKSQGTGFEEDNVKCCILVLEKLKEVLPIMNPRVKGEAMKLAVEWKTKMGVGTLNSLEVLVFLQLLGTFELVASFNRVEIVELLWTISEHKQAPETCRALGFTDIVANFVRNLIGRKKHIAAIRFICAFKLTDIAKPEAIFKQYLDDNISDIH**********VKAMDFEVNALTFLIECFKENKLESSLLIENIKQRIVQLEMAK*****************************************************************************************************************************************************
Disordered Region (DISOPRED)
MKN******************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************LVLDA*********************RRTCILLLEQLS*************AMKVAGEW**********SLEVLGFLHLLAAYGLGPSFDGIELESLLDIVAQHRQTSKLRQSLGFAEKAHGLQCSTTREARSCLSLLNKHDLGHNEVLQLLHLAPDPAMFVLDFIQHWKSQ****EEDNVKCCILVLEKLKEVLPIMNPRVKGEAMKLAVEWKTKMG*GTLNSLEVLVFLQLLGTFELVASFNRVEIVELLWTISEHKQAPETCRALGFTDIVANFVRNLIGRKKHIAAIRFICAFKLTDIAKPEAIFKQYLD***********************EVNALTFLIECFKENKLESSLLIENIK******************************************************************************************************************************************************LH*****Y*
Disordered Region (DISEMBL)
**********LRLAESKKEILRRSYDLAHAQANSVLNFTVQWKDLEEHLDISMKSLEKQSNDADSKIRLLDQRAKEIESKESDLVLAERRIKECNFELACKEKQLELVRKRIGECECELQLKEGELNLVKKSVEEWLEKLDLKMKEVGLVEKSNDKSLVDQRRLENLIKDFCEQIELKEKDLRKIRSSIEECEKELVMKEKHASSLQSLIEDYAEELESKEKLYDEIKKSIIQCETKLDCKKKELELTQTSIIELSLELHLEEEKLESLQRIVRLRENELDSKEEKLDAMKEEMKKYFNDIELKEREFNGIRKCIEKRSQELTLKEKQLKCVQESLEGCRNEFEEKENELISVEKLIDKCSEELELKKKHLCVIENSAAELSDECESNELELDLIQTMAIGYLKQLKEKEKQFHSLKEALDERWQDLEIKERKFEERVKEFELREKEIESIRKAVEDRSKNLELKEKKLSNNLHLQVKIEQPESLKGNEGTKQLSLQSCTMITGKNLQLLLNQHLQKHDLVFGEISHTLTKACDPASLVLDAMEGFYPPHSREGDMEFDVSIIRRTCILLLEQLSSVTPEINPQVRDEAMKVAGEWKKKMRVAEDNSLEVLGFLHLLAAYGLGPSFDGIELESLLDIVAQHRQTSKLRQSLGFAEKAHGLQCSTTREARSCLSLLNKHDLGHNEVLQLLHLAPDPAMFVLDFIQHWKSQGTGFEEDNVKCCILVLEKLKEVLPIMNPRVKGEAMKLAVEWKTKMGVGTLNSLEVLVFLQLLGTFELVASFNRVEIVELLWTISEHKQAPETCRALGFTDIVANFVRNLIGRKKHIAAIRFICAFKLTDIAKPEAIFKQYLDDNISDIHRKGNNSSDAKVKAMDFEVNALTFLIECFKENKLESSLLIENIKQRIVQLEMA*************ATIQLQLASRNNYNIGTSTPT*************SGINHSIGFSASREQPQLQNNYKRPRIEPLTTRAYMPQIPASVNLHRSSPTMQHGPGVALSGGQMQFDHIASNHLRVRANMGAGQTSNVTGNQNLHHFQYKYF
Disordered Region (DISPRO)
*****NNKEELRLAESKKEILRRSYDLAHAQANSVLNFTVQWKDLEEHLDISMKSLEKQSNDADSKIRLLDQRAKEIESKESDLVLAERRIKECNFELACKEKQLELVRKRIGECECELQLKEGELNLVKKSVEEWLEKLDLKMKEVGLVEKSNDKSLVDQRRLENLIKDFCEQIELKEKDLRKIRSSIEECEKELVMKEKHASSLQSLIEDYAEELESKEKLYDEIKKSIIQCETKLDCKKKELELTQTSIIELSLELHLEEEKLESLQRIVRLRENELDSKEEKLDAMKEEMKKYFNDIELKEREFNGIRKCIEKRSQELTLKEKQLKCVQESLEGCRNEFEEKENELISVEKLIDKCSEELELKKKHLCVIENSAAELSDECESNELELDLIQTMAIGYLKQLKEKEKQFHSLKEALDERWQDLEIKERKFEERVKEFELREKEIESIRKAVEDRSKNLELKEKKLSNN*****************GTKQLSLQSCTMITGKNLQLLLNQHLQKHDLVFGEISHTLTKACDPASLVLDAMEGFYPPHSREGDMEFDVSIIRRTCILLLEQLSSVTPEINPQVRDEAMKVAGEWKKKMRVAEDNSLEVLGFLHLLAAYGLGPSFDGIELESLLDIVAQHRQTSKLRQSLGFAEKAHGLQCSTTREARSCLSLLNKHDLGHNEVLQLLHLAPDPAMFVLDFIQHWKSQGTGFEEDNVKCCILVLEKLKEVLPIMNPRVKGEAMKLAVEWKTKMGVGTLNSLEVLVFLQLLGTFELVASFNRVEIVELLWTISEHKQAPETCRALGFTDIVANFVRNLIGRKKHIAAIRFICAFKLTDIAKPEAIFKQYLDDNISDIHRKGNNSSDAKVKAMDFEVNALTFLIECFKENKLESSLLIENIKQRIVQLEMAKA***************************************T*Q*QHSGINHSIGFSASREQPQLQNNYKRPRIEPLTTRAYMPQIPASVNLHRSSPTMQHGPGVALSGGQMQFDHIASNHLRVRANMGAGQTSNVTGNQNLHHFQYKYF
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKNxxxxxxxxxxxxxxxxxxxxxYDLAHAQANSVLNFTVQWKDLEEHLDISxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxIKECNFELACKEKQLELVRKRIGECECELQLKEGELNLVKKSVEEWLEKLDLKMKEVGLVEKSNDKSLVDQRRLENLIKDFCEQxxxxxxxxxxxxxxxxxxxxxLVMKEKHxxxxxxxxxxxxxxxxxxxxxxxxxxxxIIQCETKLDCKKKELELTQTSxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxFNGIRKCIEKRSQELTLKEKQxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLELKKKHLCVIENSAAELSDECESNELELDLIQTMAIGYxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxVKEFELREKEIESIxxxxxxxxxxxxxxxxxxxxxLHLQVKIEQPESLKGNEGTKQLSLQSCTMITGKNLQLLLNQHLQKHDLVFGEISHTLTKACDPASLVLDAMEGFYPPHSREGDMEFDVSIIRRTCILLLEQLSSVTPEINPQVRDEAMKVAGEWKKKMRVAEDNSLEVLGFLHLLAAYGLGPSFDGIELESLLDIVAQHRQTSKLRQSLGFAEKAHGLQCSTTREARSCLSLLNKHDLGHNEVLQLLHLAPDPAMFVLDFIQHWKSQGTGFEEDNVKCCILVLEKLKEVLPIMNPRVKGEAMKLAVEWKTKMGVGTLNSLEVLVFLQLLGTFELVASFNRVEIVELLWTISEHKQAPETCRALGFTDIVANFVRNLIGRKKHIAAIRFICAFKLTDIAKPEAIFKQYLDDNISDIHRKGNNSSDAKVKAMDFEVNALTFLIECFKENKLESSLLxxxxxxxxxxxxxxxxxxxxxSTPAPSATIQLQLASRNNYNIGTSTPTNQPVPSHTNQPQHSGINHSIGFSASREQPQLQNNYKRPRIEPLTTRAYMPQIPASVNLHRSSPTMQHGPGVALSGGQMQFDHIASNHLRVRANMGAGQTSNVTGNQNLHHFQYKYF
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	1060
449466953	1145	PREDICTED: uncharacterized protein LOC10	0.903	0.836	0.291	1e-99
449524874	888	PREDICTED: uncharacterized LOC101218416,	0.713	0.851	0.294	3e-82
224130844	1006	predicted protein [Populus trichocarpa]	0.527	0.555	0.359	3e-77
356541044	885	PREDICTED: uncharacterized protein LOC10	0.756	0.906	0.307	5e-77
356544329	1117	PREDICTED: uncharacterized protein LOC10	0.742	0.704	0.308	2e-72
297813019	1191	predicted protein [Arabidopsis lyrata su	0.787	0.701	0.267	7e-58
15240463	1181	Frigida-like protein [Arabidopsis thalia	0.910	0.817	0.259	2e-54
255542460	716	Protein FRIGIDA, putative [Ricinus commu	0.363	0.537	0.355	1e-49
224130856	1033	predicted protein [Populus trichocarpa]	0.553	0.568	0.288	1e-48
224130848	954	predicted protein [Populus trichocarpa]	0.557	0.619	0.292	8e-46

>gi|449466953|ref|XP_004151190.1| PREDICTED: uncharacterized protein LOC101218416 [Cucumis sativus]

 Score =  371 bits (953), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 326/1117 (29%), Positives = 565/1117 (50%), Gaps = 159/1117 (14%)

Query: 11   LRLAESKKEILRRSYDLAHAQANSVLNFTVQWKDLEEHLDISMKSLEKQSNDADSK---I 67
            ++L+E K+  L ++++  H++A+S L F++QWKDLE H + + + +  Q  + + +   I
Sbjct: 11   MKLSEWKQSNLCKAHEQLHSEASSFLLFSLQWKDLETHFESTREMILTQCEEVERREKAI 70

Query: 68   RLLDQR-----------AKEIESKESDLVLAERRIKECNFELACKEKQLELVRKRIGECE 116
             L +++           +KE+E ++++L    R I +C+  +  KE +LEL+ +R+G   
Sbjct: 71   ALKEEKLVDLEKCILECSKEVELRKNELSELNRLIVKCDSAVKGKEMELELMHERLGVLS 130

Query: 117  CELQLKEGELNLVKKSVEEWLEKLDLKMKEVGLVEKSNDK-----SLVDQR--RLENLIK 169
             ++++KE EL    + + +  ++ + K K+  +V +  D       L +Q+   +  LI+
Sbjct: 131  KDIKMKEDELCRACRRLSDLEKEFEEKEKDFEMVRERIDDCEHAMELKEQKLNGVMQLIE 190

Query: 170  DFCEQIELKEKDLRKIRSSIEECEKELVMKEKHASSLQSLIEDYAEELESKEKLYDEIKK 229
            +   + ELKEK +  IR+ +   E+EL +KEK   ++Q  I+D   EL+ KEK  + I+ 
Sbjct: 191  ERLMECELKEKSVESIRALLRNHEEELAIKEKQFDAIQMAIKDSNGELKLKEKELETIQN 250

Query: 230  SIIQCETKLDCKKKELELTQTSIIELSLELHLEEEKLESLQRIVRLRENELDSKEEKLDA 289
             I    TK                        +E++L+ +++ +++R  ELD KE++ D 
Sbjct: 251  MIA---TK-----------------------WKEKRLDKIEKTIKVRTEELDLKEQEFDV 284

Query: 290  MKEEMKKYFNDIELKEREFNGIRKCIEKRSQELTLKEKQLKCVQESLEGCRNEFEEKENE 349
            M  ++     D+  KE E   I+ CI++ S+EL ++EKQL   Q+S+  C+N      N 
Sbjct: 285  MWSKLGALSEDLLSKESELESIKSCIKEHSKELDVQEKQLDGTQQSIRDCQNAVMMLTNY 344

Query: 350  LISVEKLIDKCSEELELKKKHLCVIENSAAELSDECESNELELDLIQTMAIGYLKQLKEK 409
            + ++EK I +CS+E EL++ H   ++ +    S++  S   +   I       L+ LK +
Sbjct: 345  VSTIEKAIIECSKEWELEENHHHSLKETVDGNSNDFSSVVEQHGSISLTVDKCLEGLKSQ 404

Query: 410  EKQFHSLKEALDERWQDLEIKERKFEERVKEFELRE-------KEIESIRKAVE------ 456
            ++ F++L++ ++ER + LE  E  F+ R++E   ++       KEIES++  ++      
Sbjct: 405  KEHFNALRKFIEERSKYLENVENNFKRRMEELNKKDEKVSLYLKEIESLKADMDSQILLL 464

Query: 457  --DR-------------SKNLELKEKKLS-------------------NNLHLQVKIEQP 482
              DR              + LE KEK+++                   NNLHLQVK E+ 
Sbjct: 465  EKDREELRLKEIQHKAPDEELESKEKEINLVRALIQKCNEKVKLIDDPNNLHLQVKTEE- 523

Query: 483  ESLKGNEGTKQLSLQSCTMITGKNLQLLLNQHLQKHDLVFGEISHTLTKACDPASLVLDA 542
               K    +  L   + + + GK L  LL +HL+ HDLV  E+  TL  + DPA LVLDA
Sbjct: 524  SGCKPAGSSNTLHFPTGSALDGKLLLALLCEHLKLHDLVRAELMITLKASSDPAKLVLDA 583

Query: 543  MEGFYPPHSREGDMEFDVSIIRRTCILLLEQLSSVTPEINPQVRDEAMKVAGEWKKKMRV 602
            M  FYP H+   D + D   ++R CI L E L + +P+I P +++EA+++AG WK K+ +
Sbjct: 584  MRWFYPTHTESKDAKIDFYNVKRGCIFLSELLLNFSPKITPPLKEEALRLAGLWKAKLVM 643

Query: 603  AEDNSLEVLGFLHLLAAYGLGPSFDGIELESLLDIVAQHRQTSKLRQSLGFAEKA----- 657
              +N  EV+ FL L+A + L  +F+  EL+ LL+ V+Q++Q  +L ++LG  +K+     
Sbjct: 644  PVENHAEVVAFLLLVANFRLASNFNAGELQILLNSVSQYKQAFELSRALGIGDKSSEVNA 703

Query: 658  -------------HGLQCSTTREARSC-------LSLLNKHDLGHNE-----VLQLLHLA 692
                          GL  S+  E  S          LLNK  L  ++     +L +L  +
Sbjct: 704  TPTPSLVELEQPNEGLVFSSKNEQLSMEPNEKRLYVLLNKKRLTGSKLIPSVILSILKQS 763

Query: 693  PDPAMFVLDFI-----QHWKSQGTGFEEDNVKCCILVLEKLKEVLPIMNPRVKGEAMKLA 747
             DPA  VLD I     QH K +  GF+E+ +    L+L++LK++ P + P+ + +AMK+A
Sbjct: 764  LDPAKLVLDLIQGSFHQHLKKEQLGFKENFLTWSTLLLKQLKQISPSIGPKEREDAMKIA 823

Query: 748  VEWKTKMGVGTLNSLEVLVFLQLLGTFELVASFNRVEIVELLWTISEHKQAPETCRALGF 807
            ++WK  M   T  S++ + FLQLL ++ L  SF+  EI++L   I  H+QA E C   G+
Sbjct: 824  IDWKQNMRSDTNGSMDAVGFLQLLVSYGLTTSFSGDEILKLFENIVHHEQASELCLMFGY 883

Query: 808  TDIVANFVRNLIGRKKHIAAIRFICAFKLTDIAKPEAIFKQYLDD--NISDIHRKGNN-- 863
               + + V+NLIG K+ + A+RF+C FKL +  +P  I  +YL D  N + +  K N   
Sbjct: 884  KQQIQDIVQNLIGTKQVVKAVRFVCGFKL-EFFRPVQILNEYLRDVRNATVLASKKNQGQ 942

Query: 864  ----SSDAKVKAMDFEVNALTFLIECFKENKLESSLLIENIKQRIVQL-EMAKADCRRHS 918
                ++ A  +A+D E++A+  +I C  +  L S +  + ++ R+V L EM +     + 
Sbjct: 943  KDVPTAIAMDEAIDKEIDAVKSVISCIADCNLSSEISSQVLETRVVSLEEMRRLKFNSNG 1002

Query: 919  TPAPSATIQLQLASRNNYNIGTSTPTN-----------QPVPSHTNQPQHSGINHSI--- 964
             P    T + Q  S+       S PT            Q  P H    +H    H     
Sbjct: 1003 QPTSLTTSKPQ-PSKAYTEAQCSNPTKVLPNWEKSDVPQSHPKHHQFRKHPSSTHKPHQQ 1061

Query: 965  --GFSASREQPQLQNNYKR-PRIEPLTTR-AYMPQIP 997
              G    +++ + Q +  R PR +P  TR  ++  +P
Sbjct: 1062 HQGPQKMQKKRKFQKSSMRHPRKQPCQTRPVFLSSLP 1098

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449524874|ref|XP_004169446.1| PREDICTED: uncharacterized LOC101218416, partial [Cucumis sativus]

 Score =  313 bits (802), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 269/914 (29%), Positives = 469/914 (51%), Gaps = 158/914 (17%)

Query: 11  LRLAESKKEILRRSYDLAHAQANSVLNFTVQWKDLEEHLDISMKSLEKQSNDADSK---I 67
           ++L+E K+  L ++++  H++A+S L F++QWKDLE H + + + +  Q  + + +   I
Sbjct: 11  MKLSEWKQSNLCKAHEQLHSEASSFLLFSLQWKDLETHFESTREMILTQCEEVERREKAI 70

Query: 68  RLLDQR-----------AKEIESKESDLVLAERRIKECNFELACKEKQLELVRKRIGECE 116
            L +++           +KE+E ++++L    R I +C+  +  KE +LEL+ +R+G   
Sbjct: 71  ALKEEKLVDLEKCILECSKEVELRKNELSELNRLIVKCDSAVKGKEMELELMHERLGVLS 130

Query: 117 CELQLKEGEL---------------------NLVKKSVEEWLEKLDLKMKEVGLVEKSND 155
            ++++KE EL                      +V++ +++    ++LK +++  V +   
Sbjct: 131 KDIKMKEDELCRACRRLSDLEKEFEEKEKDFEMVRERIDDCEHAMELKEQKLNGVMQ--- 187

Query: 156 KSLVDQRRLENLIKDFCEQIELKEKDLRKIRSSIEECEKELVMKEKHASSLQSLIEDYAE 215
             L+++R +E          ELKEK +  IR+ +   E+EL +KEK   ++Q  I+D   
Sbjct: 188 --LIEERLME---------CELKEKSVESIRALLRNHEEELAIKEKQFDAIQMAIKDSNG 236

Query: 216 ELESKEKLYDEIKKSIIQCETKLDCKKKELELTQTSIIELSLELHLEEEKLESLQRIVRL 275
           EL+ KEK  + I+  I    TK                        +E++L+ +++ +++
Sbjct: 237 ELKLKEKELETIQNMIA---TK-----------------------WKEKRLDKIEKTIKV 270

Query: 276 RENELDSKEEKLDAMKEEMKKYFNDIELKEREFNGIRKCIEKRSQELTLKEKQLKCVQES 335
           R  ELD KE++ D M  ++     D+  KE E   I+ CI++ S+EL ++EKQL   Q+S
Sbjct: 271 RTEELDLKEQEFDVMWSKLGALSEDLLSKESELESIKSCIKEHSKELDVQEKQLDGTQQS 330

Query: 336 LEGCRNEFEEKENELISVEKLIDKCSEELELKKKHLCVIENSAAELSDECESNELELDLI 395
           +  C+N      N + ++EK I +CS+E EL++ H   ++ +    S++  S   +   I
Sbjct: 331 IRDCQNAVMMLTNYVSTIEKAIIECSKEWELEENHHHSLKETVDGNSNDFSSVVEQHGSI 390

Query: 396 QTMAIGYLKQLKEKEKQFHSLKEALDERWQDLEIKERKFEERVKEFELRE-------KEI 448
                  L+ LK +++ F++L++ ++ER + LE  E  F+ R++E   ++       KEI
Sbjct: 391 SLTVDKCLEGLKSQKEHFNALRKFIEERSKYLENVENNFKRRMEELNKKDEKVSLYLKEI 450

Query: 449 ESIRKAVE--------DR-------------SKNLELKEKKLS----------------- 470
           ES++  ++        DR              + LE KEK+++                 
Sbjct: 451 ESLKADMDSQILLLEKDREELRLKEIQHKAPDEELESKEKEINLVRALIQKCNEKVKLID 510

Query: 471 --NNLHLQVKIEQPESLKGNEGTKQLSLQSCTMITGKNLQLLLNQHLQKHDLVFGEISHT 528
             NNLHLQVK E+    K    +  L   + + + GK L  LL +HL+ HDLV  E+  T
Sbjct: 511 DPNNLHLQVKTEES-GCKPAGSSNTLHFPTGSALDGKLLLALLCEHLKLHDLVRAELMIT 569

Query: 529 LTKACDPASLVLDAMEGFYPPHSREGDMEFDVSIIRRTCILLLEQLSSVTPEINPQVRDE 588
           L  + DPA LVLDAM  FYP H+   D + D   ++R CI L E L + +P+I P +++E
Sbjct: 570 LKASSDPAKLVLDAMRWFYPTHTESKDAKIDFYNVKRGCIFLSELLLNFSPKITPPLKEE 629

Query: 589 AMKVAGEWKKKMRVAEDNSLEVLGFLHLLAAYGLGPSFDGIELESLLDIVAQHRQTSKLR 648
           A+++AG WK K+ +  +N  EV+ FL L+A + L  +F+  EL+ LL+ V+Q++Q  +L 
Sbjct: 630 ALRLAGLWKAKLVMPVENHAEVVAFLLLVANFRLASNFNAGELQILLNSVSQYKQAFELS 689

Query: 649 QSLGFAEKA------------------HGLQCSTTREARS-------CLSLLNKHDLGHN 683
           ++LG  +K+                   GL  S+  E  S          LLNK  L  +
Sbjct: 690 RALGIGDKSSEVNATPTPSLVELEQPNEGLVFSSKNEQLSMEPNEKRLYVLLNKKRLTGS 749

Query: 684 E-----VLQLLHLAPDPAMFVLDFI-----QHWKSQGTGFEEDNVKCCILVLEKLKEVLP 733
           +     +L +L  + DPA  VLD I     QH K +  GF+E+ +    L+L++LK++ P
Sbjct: 750 KLIPSVILSILKQSLDPAKLVLDLIQGSFHQHLKKEQLGFKENFLTWSTLLLKQLKQISP 809

Query: 734 IMNPRVKGEAMKLAVEWKTKMGVGTLNSLEVLVFLQLLGTFELVASFNRVEIVELLWTIS 793
            + P+ + +AMK+A++WK  M   T  S++ + FLQLL ++ L  SF+  EI++L   I 
Sbjct: 810 SIGPKEREDAMKIAIDWKQNMRSDTNGSMDAVGFLQLLVSYGLTTSFSGDEILKLFENIV 869

Query: 794 EHKQAPETCRALGF 807
            H+QA E C   G+
Sbjct: 870 HHEQASELCLMFGY 883

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224130844|ref|XP_002328390.1| predicted protein [Populus trichocarpa] gi|222838105|gb|EEE76470.1| predicted protein [Populus trichocarpa]

 Score =  297 bits (760), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 218/606 (35%), Positives = 362/606 (59%), Gaps = 47/606 (7%)

Query: 70  LDQRAKEIESKESDLVLAERRIKECNFELACKEKQLELVRKRIGECECELQLKE------ 123
           +++R KE+E  E ++    + I  C+ +L  K+K+L  VR  I +C  EL  KE      
Sbjct: 182 VEERLKELEFNEKEVERVRKLIANCDRDLEFKQKELRNVRNLINDCNKELSSKEMDLKML 241

Query: 124 ------------GELNLVKKSVEEWLEKLDLKMKEVGLVEKSNDKSLVDQRRLENLIKDF 171
                        EL+ +KKS+E   ++LDLK KE+       DK+       + LI++ 
Sbjct: 242 QVRSSAKFVSNKDELDGIKKSIE-CSKELDLKKKEL-------DKT-------KELIQEC 286

Query: 172 CEQIELKEKDLRKIRSSIEECEKELVMKEKHASSLQSLIEDYAEELESKEKLYDEIKKSI 231
            ++++ +E++L  I+ SIEE  K+   ++ H  S+  LI++Y EELE+KEK +D +KKSI
Sbjct: 287 VKELDSEERELSLIKKSIEESSKDFDSRQNHLGSISVLIDEYTEELEAKEKQHDAVKKSI 346

Query: 232 IQCETKLDCKKKELELTQTSIIELSLELHLEEEKLESLQRIVRLRENELDSKEEKLDAMK 291
                +L  K+ EL   + SI ELS +L  +EEKL+S ++ V+    +++SKEE+L+ +K
Sbjct: 347 SVRSAELKSKETELRSIEDSIKELSAKLQQKEEKLDSARQHVKHCARKIESKEEELNKIK 406

Query: 292 EEMKKYFNDIELKEREFNGIRKCIEKRSQELTLKEKQLKCVQESLEGCRNEFEEKENELI 351
             M  Y  ++E +EREFN I+  IE RS+EL  KE+QLK VQ S+  C  E +  + +  
Sbjct: 407 GRMNTYVKELESREREFNAIQLSIEYRSEELKGKERQLKSVQLSIGECEKELKAMKEQKN 466

Query: 352 SVEKLIDKCSEELELKKKHLCVIENSAAELSDECESNELELDLIQTMAIGYLKQLKEKEK 411
           S++KLI +CSEEL+ K+K+L +   S  E  D+ E  +++LD IQ  +    K+ +EKEK
Sbjct: 467 SIQKLILECSEELQSKEKNLILARESLRECCDDLELKKVQLDSIQRSSHESNKKSEEKEK 526

Query: 412 QFHSLKEALDERWQDLEIKERKFEERVKEFELREKEIESIRKAVEDRSKNLELKEKKLSN 471
             +SL++ LDER ++L +KE +FEERV E EL+E+++  ++++VE   K +ELKE++L +
Sbjct: 527 YLNSLEKTLDERLKNLGVKEMQFEERVNEIELKEQQLRLMQQSVEKYRKEVELKEQQLGS 586

Query: 472 N-LHLQVKIEQPESLKGNEGTKQLSLQSCTMITGKNLQLLLNQHLQKHDLVFGEISHTLT 530
           N L   V+++Q E+++  +     + Q     T +    ++N  + +HDL+   +S    
Sbjct: 587 NILSSHVRVDQTENVRNPKHASSSAFQ-FNATTSERSSPVVNVCVSEHDLMHHGVS---- 641

Query: 531 KACDPASLVLDAMEGFYPPHSREGDMEFDVSIIRRTCILLLEQLSSVTPEINPQVRDEAM 590
              +PA +VLD ++ +     ++G   FD S + R  ++LLEQL  V+P+I+PQV++ A 
Sbjct: 642 --AEPAKVVLDIVQNW-----KKGVTGFDAS-VNRDNVVLLEQLMKVSPKISPQVKEAAT 693

Query: 591 KVAGEWKKKMRVAEDNSLEVLGFLHLLAAYGLGPSFDGIELESLLDIVAQHRQTSKLRQS 650
           K+A  W+K +R+  ++S+EVL FL  LA YGL   F    +  L+ ++AQ +Q  ++ ++
Sbjct: 694 KLAVLWEKNIRLETEDSMEVLMFLLFLAVYGLVSCFSRDRILRLVRVIAQQKQAPEIFKA 753

Query: 651 LGFAEK 656
           LGFA+K
Sbjct: 754 LGFADK 759

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356541044|ref|XP_003538993.1| PREDICTED: uncharacterized protein LOC100783311 [Glycine max]

 Score =  296 bits (757), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 285/928 (30%), Positives = 460/928 (49%), Gaps = 126/928 (13%)

Query: 101 KEKQLELVRKRIGECECELQLKEGELNLVKKSVEEWLEKLDLKMKEVGLVEKSNDKSLVD 160
           KEK+L  ++++ G    E+  KE E ++V + VEE   +L+           S  + + D
Sbjct: 19  KEKKLVSIKRQFGR---EIDAKEREYDVVTRKVEERNRELE-----------SVQRRITD 64

Query: 161 -QRRLENLIKDFCEQIELKEKDLRKIRSSIEECEKELVMKEKHASSLQSLIEDYAEELES 219
            + +L+ + +   E  E+ ++  R I+ S    ++EL  KE H S +  +I +  +EL +
Sbjct: 65  CEWKLDTVRRMITESDEVYQQKQRGIQDS----DRELAEKEAHRSLIADMIREREQELRA 120

Query: 220 KEKLYDEI-------KKSIIQCETKLDCKKKELELTQTSII-ELSLELHL---------- 261
           K+  + ++       K  + Q    L  KK+EL++   S+I E + E  +          
Sbjct: 121 KDAEFQQVLDEGMALKNKVAQLNDDLKTKKEELDVVTRSLINEQATETTIKSMRARIKQL 180

Query: 262 ----------------EEEKLESLQRIVRLRENELDSKEEKLDAMKEEMKKYFNDIELKE 305
                           + ++LES Q+    +  EL SK+++ +   +E+K      E K 
Sbjct: 181 LRQPYESESKQKQFEGQAKELESKQKHYERQVKELQSKQKQYEGRVKELKLNEKLYERKV 240

Query: 306 REFNGIRKCIEKRSQELTLKEKQLKCVQESLEGCRNEFEEKENELISVEKLIDKCSEELE 365
           RE     K  E R +EL   EKQ +   + +E    ++E++  EL+S E+   K   EL 
Sbjct: 241 RELGSREKQYETRMKELESNEKQCETRMKEVESNAKQYEKRVKELVSHERQYVKSVIELN 300

Query: 366 LKKKHLCVIENSAAELSDECESNELELDLIQTMAIGYLKQLKEKEKQFHSLKEALDERWQ 425
            K+K    IE    +L  E + N+ E         G +K+L+ KE +   L        +
Sbjct: 301 SKEKQ---IEGQMVDL--ESKKNQYE---------GLVKELESKEARCKVL-------LK 339

Query: 426 DLEIKERKFEERVKEFELREKEIESIRKAVEDRSKNLELKEKKLSNNLHLQVKIEQPESL 485
           +LE  E+K +E++K+ E ++ + ES RK+ E+     +L ++K ++  H           
Sbjct: 340 ELESIEKKIQEQMKDLEFKKNQCESSRKSFEEE----KLSKQKSNDQQHFT--------- 386

Query: 486 KGNEGTKQLSLQSCTMITG----KNLQLLLNQHLQKHDLVFGEISHTLTKACDPASLVLD 541
                    SL +    TG    KNL L +N  L+K++L+  ++S  L    +P  LVLD
Sbjct: 387 ----NANSASLFNQQNFTGADNSKNLPLFIN-LLEKYELMCSQVSDALQTFANPTKLVLD 441

Query: 542 AMEGFYPPHSREGDMEFDVSIIRRTCILLLEQLSSVTPEINPQVRDEAMKVAGEWKKKMR 601
            ++GFY  HSR+G +E+D SI RR C LL+++L   +P I  +V+ EA+K+A +WK  + 
Sbjct: 442 TIKGFYTSHSRQGLIEYDASISRRICNLLMDELKKSSPVIGIRVKQEAIKLATDWKANLV 501

Query: 602 VAEDNSLEVLGFLHLLAAYGLGPSFDGIELESLLDIVAQHRQTSKLRQSLGFAEKAHGLQ 661
             + + LEVL F   +A Y +G SFD IEL+ LLDI+A   QT    Q++G  ++    Q
Sbjct: 502 AGDKDCLEVLDFFKFVATYEIGSSFDAIELQRLLDIIALQYQTL---QAIGKIKEPSDNQ 558

Query: 662 CSTTREARSCLSLLNKHDLGH-NEVLQLLHLAPDPAMFVLDFI-QHWKSQGTGFEEDNV- 718
            S T + R+    L+   + H NE +  LH + DPA  VLD I     S+  G E   + 
Sbjct: 559 SSPTIDGRN----LHFPSIKHINESVN-LHTSSDPAKLVLDIILVPIASEKQGSEGAIII 613

Query: 719 -KCCILVLEKLKEVLPIMNPRVKGEAMKLAVEWKTKMGVGTLNSLEVLVFLQLLGTFELV 777
            +  IL+LE+L  + P + PRV+ EA+K+A   K  +     NSL +L FL LL  + LV
Sbjct: 614 DESHILLLEQLMRISPRVKPRVREEALKIAFALKANIRESAENSLTILGFLLLLSAYGLV 673

Query: 778 ASFNRVEIVELLWTISEHKQAPETCRALGFTDIVANFVRNLIGRKKHIAAIRFICAFKLT 837
           + F + E+ + L + ++HKQA E  R LGF D + +FVRNLI +++HI A+RFICA+KL 
Sbjct: 674 SYFRKDELFKQLESAAQHKQAVELFRTLGFVDKIFDFVRNLIMKQQHIEAVRFICAYKLA 733

Query: 838 DIAKPEAIFKQYLDDNISDIHRKG--NNSSDAKVKAMDFEVNALTFLIECFKENKLESSL 895
           D  +P  + +Q++    S  +R      S + K+K  D E+  L  ++EC  EN LES  
Sbjct: 734 DKIQPVDLLRQHVAKVKSVTNRFACMKESVEQKIKVRDEEIVGLRTVLECISENNLESHQ 793

Query: 896 -LIENIKQRIVQLEMAKADCRRHSTPAPSA------------TIQLQLASRNNYNIGTST 942
            L++ I  RIV LE  K +  R  T  PS+            T+ +        ++G   
Sbjct: 794 DLVKEINDRIVDLEKQKENVVRL-TSGPSSEVEEKTCGGEAVTVTVHKPEEKKRHVGFVF 852

Query: 943 PTNQPVPSHTNQPQHSGINHSIGFSASR 970
           P N   P+  N    SG N +  +  SR
Sbjct: 853 PENYFRPA--NPMAWSGNNGTNYYGNSR 878

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356544329|ref|XP_003540605.1| PREDICTED: uncharacterized protein LOC100782802 [Glycine max]

 Score =  281 bits (719), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 262/850 (30%), Positives = 427/850 (50%), Gaps = 63/850 (7%)

Query: 38   FTVQWKDLEEHLDISMKSLEKQSNDADSKIRLLDQRAKEIESKESDLVLAERRIKECNFE 97
            F VQ KD E       K  E Q  D   K++  + +    E +  +L   E+ ++E   +
Sbjct: 273  FKVQLKDFES----KEKRFEGQMKDLGFKMKQFEWKEARFEGQVKELKSKEKWVEEQMKD 328

Query: 98   LACKEKQLELVRKRIGECECELQLKEGELNLVKKSVEEWLEKLDLKMKEVGLVEKSNDKS 157
            L  K KQ E  +K +   E + + +  EL   +K  EE ++ L+ KMKE    +K  +  
Sbjct: 329  LEFKRKQFEGKQKELELKEAQFEGQVKELKSKEKQFEEQMKVLEFKMKEFVGKQKVFE-- 386

Query: 158  LVDQRRLENLIKDFCEQIELKEKDLRKIRSSIEECEKELVMKEKHASSLQSLIEDYAEEL 217
             + + R E  +K+    +E KEK   +   ++E  EK+   + K   S Q   E   +EL
Sbjct: 387  -LKEARFEGQVKE----LESKEKGFEERVMNLESKEKQFEGQAKELESKQKRYEGQVKEL 441

Query: 218  ESKEKLYDEIKKSIIQCETKLDCKKKELELTQTSIIELSLELHLEEEKLESLQRIVRLRE 277
            +SK+  ++ + ++      +L  K+ + E+ +    E   E  L+E  LES +++   + 
Sbjct: 442  QSKQNQFEGLVRA-----HELKEKQFKGEVWELGSREKQCEGRLKE--LESNEKLYERKV 494

Query: 278  NELDSKEEKLDAMKEEMKKYFNDIELKEREFNGIRKCIEKRSQELTLKEKQLKCVQESLE 337
             EL S+E++ +   +E++      E K RE     K  E+R +EL   EKQ +   + +E
Sbjct: 495  RELGSREKQYERRVKELESNEKLYERKVRELGCREKQYERRVKELESNEKQCERRLKEVE 554

Query: 338  GCRNEFEEKENELISVEKLIDKCSEELELKKKHLCVIENSAAELSDECESNELELDLIQT 397
                ++E K  EL+S EK  +K   EL+  +K   +          + E   ++L+  + 
Sbjct: 555  SNEKQYETKVKELVSNEKQYEKRVLELKSNEKRFEIQVKGLESKEKQIEGQTMDLESKKD 614

Query: 398  MAIGYLKQLKEKEKQFHSLKEALDE-------RWQDLEIKERKFEERVKEFELRE----- 445
               G +K+L+ KE ++  L E L+        + +DLE K+ +FE  VKEFEL+E     
Sbjct: 615  QYEGQVKELESKEARYKVLHEELESIQKQIAGQMKDLESKKNQFEGLVKEFELKEIQFKK 674

Query: 446  --KEIESIRKAVEDRSKNLELKEKKLSNNLHLQVKIEQPESLKGNEGTKQLSLQSCT--- 500
              KE++   K  E + K+ E K+ + S +L    + EQ    K N+  +     S     
Sbjct: 675  QLKELKQNEKPFEGKVKDSESKQNQ-SESLRKSFEEEQVSKQKSNDQQQFTDANSSNNSA 733

Query: 501  ----------MITGKNLQLLLNQHLQKHDLVFGEISHTLTKACDPASLVLDAMEGFYPPH 550
                          KNL L +N  L+K++L+  ++S+ L    +P  LVLD ++GFY  H
Sbjct: 734  NLFNQQHLTDADNSKNLLLFIN-LLEKYELMCSQVSNALQTFANPTKLVLDTIKGFYASH 792

Query: 551  SREGDMEFDVSIIRRTCILLLEQLSSVTPEINPQVRDEAMKVAGEWKKKMRVAEDNSLEV 610
            SR+  +E+  SI RR C LL+++L   +P I  +V+ EA K+A  WK  + V + + LEV
Sbjct: 793  SRQELIEYGASISRRICNLLMDELKKSSPVIGIRVKQEAKKLASHWKANLVVGDKDCLEV 852

Query: 611  LGFLHLLAAYGLGPSFDGIELESLLDIVAQHRQTSKLRQSLGFAEKAHGLQCSTTREARS 670
            L F   +A Y +G SFD IEL+ LLDI++   QT     +LG  E+    Q S T + R+
Sbjct: 853  LDFFKFVATYEIGSSFDAIELQRLLDIISLQYQTL---HALGKTEEPPDNQSSPTIDGRN 909

Query: 671  CLSLLNKH--DLGHNEVLQLLHLAPDPAMFVLDFIQ----HWKSQGTG---FEEDNVKCC 721
                  +H  +     +L  LH + DPA  VLD IQ      K  G G    +E +    
Sbjct: 910  LQFPYIEHTNEFISANMLVDLHPSSDPAKVVLDMIQIPIGSEKKGGEGVIIIDESH---- 965

Query: 722  ILVLEKLKEVLPIMNPRVKGEAMKLAVEWKTKMGVGTLNSLEVLVFLQLLGTFELVASFN 781
            I +LE+L  + P + P V+ EA K+A   +  +     NSL +L FL LL  + LV+ FN
Sbjct: 966  IFLLEQLMRISPRVKPHVREEAQKIAFNLEANIRESAENSLTILGFLYLLSIYGLVSHFN 1025

Query: 782  RVEIVELLWTISEHKQAPETCRALGFTDIVANFVRNLIGRKKHIAAIRFICAFKLTDIAK 841
            +  +++L  + ++HKQA E  R LGF D + +FV+NLI +++HI A+RFICA+KL D  +
Sbjct: 1026 KDGLLKLFESAAQHKQAVELFRTLGFVDKIFDFVQNLIMKQQHIVAVRFICAYKLADKIQ 1085

Query: 842  PEAIFKQYLD 851
            P  + +Q+++
Sbjct: 1086 PVDLLRQHME 1095

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297813019|ref|XP_002874393.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297320230|gb|EFH50652.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  232 bits (592), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 262/978 (26%), Positives = 445/978 (45%), Gaps = 143/978 (14%)

Query: 97   ELACKEKQLELVRKRIGECECELQLKEGELNLVKKSVE---EWLEKLDLKMK----EVGL 149
            E+  K K L LV  +I ECE   + +  EL   +  VE   + LE++D+ ++    EV  
Sbjct: 264  EIEIKTKDLTLVMDKIAECEKLFETRSSELIKTQCEVELKGKQLEQMDIDLERRRGEVSA 323

Query: 150  VEKSNDKSLVDQRRLENLIKDFCEQIELKEKDLRKIRSSIEECEKELVMKEKHASSLQSL 209
              +  DKS    R L        ++I+ K K+L  +   I E  K+L   E+  +S Q L
Sbjct: 324  EMEHLDKSQTHSREL-------AQEIKRKRKELTAVLDKIAEYGKQLESVEQQLASQQKL 376

Query: 210  IEDYAEELESKEK--------------LYDEIKKSIIQCETKLDCKKKELELTQTSIIEL 255
            +E  + EL SK+K              L +E++++  Q ++K     +ELE  +  I E 
Sbjct: 377  LETRSSELVSKKKELDGLSLDLDLANSLNNEMRETCKQIKSK----GRELEEIERLIQER 432

Query: 256  SLELHLEEEKLESLQRIVRLRENELDSKEEKLDAMKEEMKKYFNDIELKEREFNGIRKCI 315
            S         +ES++ ++     EL SKEE+ + + E ++K  ++I  KE       + I
Sbjct: 433  S-------GHIESIKLLLEEHSEELASKEERHNEITEAIRKLSSEIVSKE-------ETI 478

Query: 316  EKRSQELTLKEKQLKCVQESLEGCRNEFEEKENELISVEKLIDKCSEELELKKKHLCVIE 375
            ++ S++  +K+++L   ++ LE    EF  KE EL SV+    +C +  E+K+K L  ++
Sbjct: 479  QQLSEKQLVKQRKLDSTEKRLENTTAEFVIKEKELGSVKDTYRECLQNWEIKEKELKSLQ 538

Query: 376  NSAAELSDECESNELELDLIQTMAIGYLKQLKEKEKQFHSLKEALDERWQDLEIKERKFE 435
                ++ D                   LK  + KE +   LK +L ER ++L +KE++  
Sbjct: 539  EEIKKIQDS------------------LKDFQSKEAEQVKLKASLMEREKELGLKEKRIR 580

Query: 436  ERVKEFELREKEIESIRKAVEDRS---KNLELKEKKLSNNLHLQVKIEQPESLKGNEGTK 492
             R ++ EL+EK++++  + ++ +    K+ ELK  K   +  L  K +     + N   +
Sbjct: 581  ARSEKIELKEKKLDAREERIDKKDEQLKSTELKLAKCVKDYELNAK-KLASFCQQNNPDQ 639

Query: 493  QLSL-QSCTMITGKNLQLLLNQHLQKHDLVFGEISHTLTKACDPASLVLDAMEGFYPPHS 551
            Q+ L +  ++   K LQLLL  HL+K D +  ++   L  + DPA LVLD ++G    H 
Sbjct: 640  QVDLVRDASVCDEKTLQLLLRGHLKKCDQLHLDVLGALKASSDPAKLVLDTIQGL---HE 696

Query: 552  REGDMEFDVSIIRRTCILLLEQLSSVTPEINPQVRDEAMKVAGEWKKKMRVAEDNSLEVL 611
            R    + D   +RR+ I LLE L +++ E   +V+ EA+K A EWK    V  +N +EVL
Sbjct: 697  RMAVTKLDPDSVRRSSICLLECLMNMSQEPKTEVQVEAIKSATEWKNTTLVKAENPVEVL 756

Query: 612  GFLHLLAAYGLGPSFDGIELESLLDIVAQHRQTSKLRQSLGFAEKA-------------- 657
            GFLH LAA+ L  +FD  ++++L D     +    L ++LG +  A              
Sbjct: 757  GFLHFLAAFSLAYTFDADKVQNLFDAAFLRQYAPSLCEALGVSSLAPVNNVLLLDDKPEQ 816

Query: 658  ---HGLQCSTTREARSCLSLLNKHDLGH---------------NEVLQLLHLAPDPAMFV 699
                 ++ S+   +      +    LG+               NEV   L    DPA +V
Sbjct: 817  QPPEAIRNSSDSRSPDVQETIASSHLGNEDVLLDPEGSASFSPNEVFTGLQGMKDPATYV 876

Query: 700  LDFI-------QHWKSQGTGFEEDNVKCCILVLEKLKEVLPIMNPRVKGEAMKLAVEWKT 752
            L+F+       QH      G  E  VK  I +LE+L  V+   +  V  +A+K+A  W  
Sbjct: 877  LNFVNDELMGAQHRGE--LGLAEPVVKTLIPLLEELPRVVR-SSKHVLSDALKVANLWSW 933

Query: 753  KMG-VGTLNSLEVLVFLQLLGTFELVASFNRVEIVELLWTISEHKQAPETCRALGFTDIV 811
             MG    ++SLE   FLQL+  + LV + ++   +     ++  KQAP+   +LG +  +
Sbjct: 934  MMGNSAQMSSLEAWGFLQLIVAYGLVHATSQENTLRFASYVAHFKQAPKLFESLGLSYAI 993

Query: 812  ANFVRNLIGRKKHIAAIRFICAFKLTDIAKPEAIFKQYLDDNISDIHRKGNNSSDAKVKA 871
             N V+ L+  + +  AIRFI  FKL     P  + K    D I ++            +A
Sbjct: 994  PNVVKQLLDERHYFMAIRFIFYFKLKSNFSPLELLK----DEIVNLRVSAKEERRFDSQA 1049

Query: 872  MDFEVNALTFLIECFKENKLESSLLIENIKQRIVQLEMAKADCRRHSTPAPSATIQLQLA 931
             D +   L  +IE  ++ KL+  L ++ I + +V  E+   +    S+  P    Q+ + 
Sbjct: 1050 EDRDAAKLKDIIELIEDFKLDIDLPVDLIVKFMVPREIQNQNQYVVSSFVPVQPPQVHMQ 1109

Query: 932  SRNNY----------------NIGTSTPTNQPVPSHTNQPQHSGINHSIGFSASREQPQL 975
            + +                   I  ++P  Q +   T Q   S + H         QP  
Sbjct: 1110 ASHTVIHSSYIATHGSNPTFPTILGASPNQQVLDMETYQAGGSTVFHG--------QPSH 1161

Query: 976  QNNYKRPRIEPLTTRAYM 993
            Q  +KRPR++P  +R  +
Sbjct: 1162 QAGFKRPRMDPSVSRPVI 1179

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15240463|ref|NP_198074.1| Frigida-like protein [Arabidopsis thaliana] gi|2191186|gb|AAB61071.1| contains similarity to tropomyosin and kinesin [Arabidopsis thaliana] gi|332006276|gb|AED93659.1| Frigida-like protein [Arabidopsis thaliana]

 Score =  221 bits (563), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 306/1180 (25%), Positives = 517/1180 (43%), Gaps = 215/1180 (18%)

Query: 10   ELRLAESKKEILRRSYDLAHAQANSVLNFTVQWKDLEEHLDISMKSLEKQSN-------D 62
            E+RL + K   +R++ D+  +QA+ VL   +QW D EEHL  + + LE +         +
Sbjct: 9    EIRLCDVKANNIRKTMDMIKSQASDVLILNLQWCDFEEHLKSASEKLELRFRELVLKEVE 68

Query: 63   ADSKIRLLDQRAKEIESKESDLVLAERRIKECNFELACKEKQLEL--VRKRIGECECELQ 120
              ++   L++RAK +E+ E++  + +  +K   F    +EK+ EL  +RK + EC  E +
Sbjct: 69   LQNRSFALEERAKVVEAAEAE--MGDLEMKASGFRSEVEEKREELGCLRKSLEECSVEER 126

Query: 121  LKEGELNLVKKSVEEWLEKLDLKMKEVGLVEKSNDKSLVDQ-------RRLENLIKDFCE 173
             K G+L+ + + + +    LDLK +E+  +    ++  V+        RR +N  ++  E
Sbjct: 127  SKRGQLSEIVELLRKSQVDLDLKGEELRQMVTHLERYRVEVKEEKEHLRRTDNGRRELEE 186

Query: 174  QIELKEKDLRKIRSSIEECEK--------------ELVMKEKHASSLQSLIEDYA----- 214
            +IE K KDL  + + I +C+K              E+ +KEK    ++  +E Y      
Sbjct: 187  EIERKTKDLTLVMNKIVDCDKRIETRSLELIKTQGEVELKEKQLDQMKIDLEKYCVDVNA 246

Query: 215  ----------------EELESKEKLYDEIKKSIIQCETKLDCKKKELELTQTSI------ 252
                            EE+E K K    +   I +CE   + +  EL  TQ  +      
Sbjct: 247  EKKNLGRTQTHRRKLEEEIERKTKDLTLVMDKIAECEKLFERRSLELIKTQGEVELKGKQ 306

Query: 253  ---IELSLELHLEE-----EKLESLQRIVRLRENELDSKEEKLDAMKEEMKKYFNDIELK 304
               +++ LE H  E     E LE  Q   R    E++ K ++L A+ ++  +Y   IEL 
Sbjct: 307  LEQMDIDLERHRGEVNVVMEHLEKSQTRSRELAEEIERKRKELTAVLDKTAEYGKTIELV 366

Query: 305  EREFNGIRKCIEKRSQELTLKEKQLKCVQESLE---GCRNEFEE-------KENELISVE 354
            E E    +K ++ RS EL  K+K+L  +   LE      NE +E       K  EL  +E
Sbjct: 367  EEELALQQKLLDIRSSELVSKKKELDGLSLDLELVNSLNNELKETVQRIESKGKELEDME 426

Query: 355  KLIDKCSEELE--------------------------LKKKHLCVI--ENSAAELSDECE 386
            +LI + S   E                          ++K  L ++  E +  +LS++  
Sbjct: 427  RLIQERSGHNESIKLLLEEHSEELAIKEERHNEIAEAVRKLSLEIVSKEKTIQQLSEKQH 486

Query: 387  SNELELDLIQTMAIGYLKQLKEKEKQFHSLKEALDERWQDLEIKE----------RKFEE 436
            S + +LD  +        +L  KE +  S+K+   E  Q+ EIKE          +K ++
Sbjct: 487  SKQTKLDSTEKCLEETTAELVSKENELCSVKDTYRECLQNWEIKEKELKSFQEEVKKIQD 546

Query: 437  RVKEFELREKEI----ESI----------RKAVEDRSKNLELKEKKL-SNNLHLQVKIEQ 481
             +K+F+ +E E+    ES+          +K +  RS+ +ELK+KKL +    L  K EQ
Sbjct: 547  SLKDFQSKEAELVKLKESLTEHEKELGLKKKQIHVRSEKIELKDKKLDAREERLDKKDEQ 606

Query: 482  PESL----------------------KGNEGTKQLSL-QSCTMITGKNLQLLLNQHLQKH 518
             +S                       + N   +Q+ L +  ++   K LQLLL  HL+K 
Sbjct: 607  LKSAEQKLAKCVKEYELNAKKLASFCQQNNPDQQVDLVRDASVCDEKTLQLLLRGHLKKC 666

Query: 519  DLVFGEISHTLTKACDPASLVLDAMEGFYPPHSREGDMEFDVSIIRRTCILLLEQLSSVT 578
            D +  ++   L  + DPA LVL+ ++     H +    + D   +RR  I LLE L  ++
Sbjct: 667  DQLHLDVLRALKASSDPAKLVLNTIQRL---HEKMAVTKLDPDSVRRGSICLLECLMDMS 723

Query: 579  PEINPQVRDEAMKVAGEWKKKMRVAEDNSLEVLGFLHLLAAYGLGPSFDGIELESLLDIV 638
            PE   +V+ EA+K   EWK    V  +N +EVLGFLH L+A+ L  +FD  ++++L D  
Sbjct: 724  PEPKTEVQVEAIKSVTEWKNTTLVKAENPVEVLGFLHFLSAFSLAYTFDADKVQNLFDAA 783

Query: 639  AQHRQTSKLRQSLGFAE-------------------KAHGLQCSTTREARSCLSLLNKHD 679
               +    L ++LG +                    +A  +  S +R      ++ + H 
Sbjct: 784  FLRQYAPSLCEALGVSSLAPVNNVLSLDDKPEQQPPEAPIINSSDSRSTNVQETIASSH- 842

Query: 680  LGH---------------NEVLQLLHLAPDPAMFVLDFIQH----WKSQG-TGFEEDNVK 719
            LG+               NEV   L    DPA +VL+ +       + +G  G  E  +K
Sbjct: 843  LGNVDVLLDPEGSTSFSPNEVFTGLQGMIDPASYVLNVVNDELLGAQQRGELGLAEPVIK 902

Query: 720  CCILVLEKLKEVLPIMNPRVKGEAMKLAVEWKTKMGVGT-LNSLEVLVFLQLLGTFELVA 778
              I +LE+L  V+   +  +  +A+++A  W   MG  T ++ LE   FLQL+  + LV 
Sbjct: 903  TLIPLLEELPRVVK-SSKHLLSDALQVATRWSWMMGNSTQMSPLEAWGFLQLIVAYGLVH 961

Query: 779  SFNRVEIVELLWTISEHKQAPETCRALGFTDIVANFVRNLIGRKKHIAAIRFICAFKLTD 838
            + ++   +     ++  KQAP+   +LG +  + N V+ L+  + +  AIRFI  FKL  
Sbjct: 962  ATSQDNTLRFASYVAHFKQAPKLFESLGLSYAMPNLVKKLLDERHYFMAIRFIFYFKLKF 1021

Query: 839  IAKPEAIFKQYLDDNISDIHRKGNNSSDAKVKAMDFEVNALTFLIECFKENKLESSLLIE 898
               P  + K    D I  +            +A D +   L  +IE  ++ KL+  L +E
Sbjct: 1022 NFSPLELLK----DEIITLRVSTKEKRRLDSQAEDRDAAKLKDIIELIEDFKLDIDLPVE 1077

Query: 899  NIKQRIVQLEMAKADCRRHST--PAPSATIQLQLASRNNYNIGTS---TPTNQPVPSHTN 953
             I + +V  E    +    S+  P  S  + +Q +  +N    TS   +P  Q +   T 
Sbjct: 1078 LIVKFMVPRENQNENQYVVSSFVPVQSPQVHMQASHGSNPTFPTSLGTSPNQQVLDLETY 1137

Query: 954  QPQHSGINHSIGFSASREQPQLQNNYKRPRIEPLTTRAYM 993
            Q        SI F A   Q      YKR R++P  +R  +
Sbjct: 1138 QA-----GGSIAFQA---QSSHHTGYKRTRMDPSVSRPVI 1169

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255542460|ref|XP_002512293.1| Protein FRIGIDA, putative [Ricinus communis] gi|223548254|gb|EEF49745.1| Protein FRIGIDA, putative [Ricinus communis]

 Score =  205 bits (522), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 155/436 (35%), Positives = 241/436 (55%), Gaps = 51/436 (11%)

Query: 255 LSLELHLEEEKLESLQRIV---RLRENELDSKEEKLDAMKEEMKKYFNDIELKEREFNGI 311
           +S EL L E K +S +R +     R + + S   +   ++++     N I+++  E + I
Sbjct: 7   ISTELQLNELKKQSFRRTLDQLHDRASSILSLTLQWKHIEDQFDSTHNSIDVRVEELHSI 66

Query: 312 RKCIEKRSQELTLKEKQLKCVQESLEGCRNEFEEKENELISVEKLIDKCSEELELKKKHL 371
            K IE++  E+  +EK L+ VQE+++   +E EE+E E   ++K      +EL  +K+ +
Sbjct: 67  HKAIEQKLDEVKKREKDLELVQEAVKLRFSEVEEREKEFALIQK------KELHDRKREI 120

Query: 372 CVIENSAAELS-------------DECESNELEL---------DLIQTMAIGYLKQLKEK 409
             IE S  EL              DE + N L L         D ++ +++  LK LKEK
Sbjct: 121 EWIEKSGKELDSVRVEIEDKLRAVDEVD-NRLTLFNHCIEEKADQVR-LSVSKLK-LKEK 177

Query: 410 EKQFHSLKEALDERWQD-----LEIKERKFEERVKEFELREKEIESIRKAVEDRSKNLEL 464
           E  F        E+  +     L +K+ +  ++ KE EL+EK++E   +  E      EL
Sbjct: 178 ELAFKDENLKEKEKKLEEHCKVLRLKDEEIHKKFKEVELKEKQLEQRYREFE------EL 231

Query: 465 KEKKLSNNLHLQVKIEQPESLKGNEGTKQLSLQSCTMITGKNLQLLLNQHLQKHDLVFGE 524
           KEK+  +N +  VKIE P+    ++     SL     + GK LQ+ LN+  +  D +  E
Sbjct: 232 KEKQKPSNNNTCVKIE-PQITTPSDA----SLYFTVNMDGKALQIFLNER-EYSDSIRDE 285

Query: 525 ISHTLTKACDPASLVLDAMEGFYPPHSREGDMEFDVSIIRRTCILLLEQLSSVTPEINPQ 584
           +   L  + DPA  VLDAM+GFYPPH R+GDMEF   ++RR+CILLLEQL  ++PEI+P 
Sbjct: 286 VFIALGFSSDPAKFVLDAMQGFYPPHLRKGDMEFKAEVVRRSCILLLEQLMKISPEISPL 345

Query: 585 VRDEAMKVAGEWKKKMRVAEDNSLEVLGFLHLLAAYGLGPSFDGIELESLLDIVAQHRQT 644
           VR+EA+K++  W  KM++  ++ LEVLGFL LLA+YGL  +FD  EL + L++V QH  +
Sbjct: 346 VRNEAIKLSFSWMTKMKIDAEHPLEVLGFLQLLASYGLASTFDADELLTQLEVVVQHSLS 405

Query: 645 SKLRQSLGFAEKAHGL 660
             L  +LGFA+K  G+
Sbjct: 406 PGLFHALGFADKISGI 421

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224130856|ref|XP_002328393.1| predicted protein [Populus trichocarpa] gi|222838108|gb|EEE76473.1| predicted protein [Populus trichocarpa]

 Score =  201 bits (512), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 217/751 (28%), Positives = 366/751 (48%), Gaps = 164/751 (21%)

Query: 10  ELRLAESKKEILRRSYDLAHAQANSVLNFTVQWKDLEEHLDISMKSLEKQSNDADSK--- 66
           EL+L + +++   RS +  H QA+S+L+ T+QWK++E H + +  S+E  +    +K   
Sbjct: 8   ELKLTKLRQQSFNRSLNEIHEQASSILSLTLQWKNIETHFESTFNSIEDSAKALRTKERK 67

Query: 67  ----------------------IRLLD----QRAKEIESKESDLVLAERRIKECNFELAC 100
                                 I+L D    +  KEIE KE D     R +      L  
Sbjct: 68  LEEREKEFESKEKEFEERCEEFIKLRDAEVEEHYKEIELKEKDFEERRREVDSERKRLEV 127

Query: 101 KEKQLE-----------------------------LVRKRIGECECELQLKEGELNLVKK 131
           + K++E                             + RK++ E    + LKE +    +K
Sbjct: 128 RPKEVEEREELVRKKFVEEIELKEKEIEERRKEIEVERKKVVEG---IMLKEKKNEERRK 184

Query: 132 SVEEWLEKL--DLKMKEVGLVEKSNDKSLVDQRRLENLIKDFCEQIELKEKDLRKIRSSI 189
            +E   +KL  +L++KE  L+E+  +  L +++     IK F E++ELKEK L       
Sbjct: 185 EIEVERKKLVEELELKEKQLLEQQKEVELENKK-----IKKFFEELELKEKQLL------ 233

Query: 190 EECEKELVMKEKHASSLQSLIEDYAEELESKEKLYDEIKKSIIQCETKLDCKKKELELTQ 249
            E +KE+ ++ K        I+ + EELESKEKL +E  + +++ E   + ++ ELEL +
Sbjct: 234 -EQQKEVELENKK-------IKKFFEELESKEKLVEE--RRLLKEENSKEWRR-ELELKE 282

Query: 250 TSIIELSLELH----LEEEKLESLQRIVRLRENELDSKEEKLDAMKEEMKKYFNDIELKE 305
            +  +   E +    L+E+K+E   R V LRE  ++ +  +++  +  +++ F ++ +K+
Sbjct: 283 INFGQQVRERYDEIELKEKKVEEEFREVALREERVEKRFREVEEKERRVRELFKEVRVKD 342

Query: 306 REFNGIRKCIEKRSQELTLKEKQL----KCVQESLEGCRNEFEEKENELISVEKLIDKCS 361
            EF   RK +E + +E+  + K++    + V E L+    +  + E  L    K +    
Sbjct: 343 DEFRERRKGVELKGREVEERIKEIGFKDRKVGERLKEVGLKDRKAEERL----KEVGLKG 398

Query: 362 EELELKKKHLCVIENSAAELSDECESNELELDLIQTMAIGYLKQLKEKEKQFHSLKEALD 421
            E+E + K + ++E +  + S+E E N                            +  L+
Sbjct: 399 REVEERVKEIALMEKNVGKRSEEVELN----------------------------RRKLE 430

Query: 422 ERWQDLEIKERKFEE--------------RVKEFELREKEIESIR--------------- 452
           E +++LE+K R+ EE              R + F+L+ K+IE ++               
Sbjct: 431 EGFRELELKSREVEEIIKGVELKEKELEERCRGFDLKGKQIEEVQLKEKELEERLREVEM 490

Query: 453 --KAVEDRSKNLELKEKKLSNNLHLQVKIEQPE-SLKGNEGTKQLSLQSCTMITGKNLQL 509
             K   +R K  ELKEK++++  + +VK E  + S+  N       L     + GK LQ+
Sbjct: 491 ENKKCLERIKEFELKEKQVADACNARVKSETVDYSMDAN-------LHFSVKMDGKALQI 543

Query: 510 LLNQHLQKHDLVFGEISHTLTKACDPASLVLDAMEGFYPPHSREGDMEFDVSIIRRTCIL 569
           LLN+  +  + +  E+S  L  + DPA LVLDAMEGFYPPH REGD+EF   +++R+C L
Sbjct: 544 LLNKRCKHDEKMKNEVSIALGLSSDPAKLVLDAMEGFYPPHLREGDVEFKEVVVKRSCNL 603

Query: 570 LLEQLSSVTPEINPQVRDEAMKVAGEWKKKMRVAEDNSLEVLGFLHLLAAYGLGPSFDGI 629
           LLEQL+ ++P I P VR EA K+A  W  KM V + ++L+V+GF +LLAAYGL  +FD  
Sbjct: 604 LLEQLTKISPTIKPHVRKEATKLAFLWMTKMTVDDQHNLDVMGFFYLLAAYGLASAFDSD 663

Query: 630 ELESLLDIVAQHRQTSKLRQSLGFAEKAHGL 660
           EL S L I+A++RQ  +  + L   +K  G 
Sbjct: 664 ELISRLVIIARNRQIPEFLRVLELGDKIPGF 694

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224130848|ref|XP_002328391.1| predicted protein [Populus trichocarpa] gi|222838106|gb|EEE76471.1| predicted protein [Populus trichocarpa]

 Score =  192 bits (488), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 198/677 (29%), Positives = 359/677 (53%), Gaps = 86/677 (12%)

Query: 10  ELRLAESKKEILRRSYDLAHAQANSVLNFTVQWKDLEEHLDISMKSLEKQSNDADSKIRL 69
           EL+ +E K+EI+R++ +    +A+SVL   +QWK+LE+H D S++ L        ++   
Sbjct: 8   ELKNSELKQEIVRKTMNELQEKASSVLLLCLQWKELEDHFD-SIRGL------IQAEKEE 60

Query: 70  LDQRAKEIESKESDLVLAERRIKECNFELACKEKQLELVRKRIGECECELQLKEGELNLV 129
           ++++ + +  +E ++ + E+R++E   E+  K++  +  R+       EL+LKE  +N  
Sbjct: 61  VERKERVVREREREVGVKEKRVEELVNEVTLKDQDFKDWRR-------ELELKE--INFG 111

Query: 130 KKSVEEW------LEKLDLKMKEVGLVEKSNDKSLVDQRRLENLIKDFCEQIELKEKDLR 183
           +K  E +       +K++ + +EV L E+  +K   +    E  + +  +++ +K+ + R
Sbjct: 112 QKVRERYDEIELKEKKVEEEFREVALREERAEKRFKEAEENERRVGELFKEVRVKDDEFR 171

Query: 184 KIRSSI--------------EECEKELVMKEKHASSLQSLIEDYAEELESKEKLYDEIKK 229
           + R  +              EE  KE+ +K++        +E+   EL  K++  +E  K
Sbjct: 172 EWRKGVELKEKELELKGREVEERIKEIRLKDRK-------VEESLNELGFKDRKVEERIK 224

Query: 230 SIIQCETKLDCKKKELELTQTSIIELSLELHLEEEKLESLQRIVRLRENELDSKEEKLDA 289
            I   + K++ + KE+      + E   E+ L++  +E   + V L++ +++ + +++ +
Sbjct: 225 EIGLKDRKVEERLKEIGFKDRKLGERLKEVGLKDRMVEERLKEVGLKDRKVEERLKEIGS 284

Query: 290 MKEEMKKYFNDIELKEREFNGIRKCIEKRSQELTLKEKQL--KCVQESLEGCRNEFEEKE 347
              ++ +   ++  K+R        +E+R +E+ LK++++  +  +  L+G   E EE+ 
Sbjct: 285 KDRKVGERLKEVGWKDR-------MVEERLKEVGLKDRKVEERLKEVGLKG--REVEERV 335

Query: 348 NELISVEKLIDKCSEELELKKKHLCVIENSAAELSDECESNELELDLIQTMAIGYLKQLK 407
            E+  +EK + K SEE+EL ++ L            E    +LEL   +   I    +LK
Sbjct: 336 KEIALMEKNVGKRSEEVELNRRKL------------EEGFRKLELKSREVEEIIEGVELK 383

Query: 408 EKEKQFHSLKEALDERWQDLEIKERKFEE---RVKEFELREKEIESIRKAVEDRSKNLEL 464
           EK          L+ER +  + K ++ EE   + KE E + +E+E   K   +R K  EL
Sbjct: 384 EK---------ILEERCRRFDFKGKQIEEVQLKEKELEEKLREVEMENKKCLERIKEFEL 434

Query: 465 KEKKLSNNLHLQVKIEQPE-SLKGNEGTKQLSLQSCTMITGKNLQLLLNQHLQKHDLVFG 523
           KEK++++  + +VK E  + S+  N       L     + GK LQ+LLN+  +  + +  
Sbjct: 435 KEKQVADACNARVKSETVDYSMDAN-------LHFSVKMDGKALQILLNKRCKHDEKMKN 487

Query: 524 EISHTLTKACDPASLVLDAMEGFYPPHSREGDMEFDVSIIRRTCILLLEQLSSVTPEINP 583
           E+S  L  + DPA LVLDAMEGF+PPH REGD+EF   +++R+C LLLEQL+ ++P I P
Sbjct: 488 EVSIALGLSSDPAKLVLDAMEGFHPPHLREGDVEFKEVVVKRSCNLLLEQLTKISPTIKP 547

Query: 584 QVRDEAMKVAGEWKKKMRVAEDNSLEVLGFLHLLAAYGLGPSFDGIELESLLDIVAQHRQ 643
            VR EA K+A  W   M V   ++L+VLGF +LLAAYGL  +FD  EL S L I+A+++Q
Sbjct: 548 HVRKEATKLAFLWMIMMTVDGQHNLDVLGFFNLLAAYGLASAFDSDELISRLVIIARNKQ 607

Query: 644 TSKLRQSLGFAEKAHGL 660
           T +  + L   +K  G 
Sbjct: 608 TPEFLRVLELGDKIPGF 624

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	1060
TAIR|locus:2181241	1181	AT5G27220 "AT5G27220" [Arabido	0.376	0.337	0.255	1.7e-54
TAIR|locus:2181251	948	AT5G27230 [Arabidopsis thalian	0.318	0.356	0.283	6.3e-43
TAIR|locus:2171327	470	FRL1 "FRIGIDA like 1" [Arabido	0.258	0.582	0.298	8.8e-24
TAIR|locus:1005716104	558	AT5G48385 "AT5G48385" [Arabido	0.228	0.433	0.312	1.2e-22
TAIR|locus:2082214	269	AT3G12190 "AT3G12190" [Arabido	0.219	0.866	0.292	1.5e-18
TAIR|locus:2031875	1128	LINC2 "LITTLE NUCLEI2" [Arabid	0.368	0.346	0.265	6e-17
TAIR|locus:2087872	532	AT3G22440 "AT3G22440" [Arabido	0.243	0.484	0.287	1e-15
TAIR|locus:2826175	473	FRL2 "AT1G31814" [Arabidopsis	0.258	0.579	0.279	5.1e-15
WB|WBGene00011696	1205	eea-1 [Caenorhabditis elegans	0.321	0.282	0.245	2e-14
DICTYBASE|DDB_G0286985	1024	zipA "zipper-like domain-conta	0.377	0.390	0.192	3.3e-14

TAIR|locus:2181241 AT5G27220 "AT5G27220" [Arabidopsis thaliana (taxid:3702)]

 Score = 296 (109.3 bits), Expect = 1.7e-54, Sum P(3) = 1.7e-54
 Identities = 113/443 (25%), Positives = 212/443 (47%)

Query:     8 KEELRLAESKKEILRRSYDLAHAQANSVLNFTVQWKDLEEHLDISMKSLEKQSNDADSK- 66
             + E+RL + K   +R++ D+  +QA+ VL   +QW D EEHL  + + LE +  +   K 
Sbjct:     7 ENEIRLCDVKANNIRKTMDMIKSQASDVLILNLQWCDFEEHLKSASEKLELRFRELVLKE 66

Query:    67 IRL------LDQRAKEIESKESDLVLAERRIKECNFELACKEKQLEL--VRKRIGECECE 118
             + L      L++RAK +E+ E+++   +  +K   F    +EK+ EL  +RK + EC  E
Sbjct:    67 VELQNRSFALEERAKVVEAAEAEM--GDLEMKASGFRSEVEEKREELGCLRKSLEECSVE 124

Query:   119 LQLKEGELNLVKKSVEEWLEKLDLKMKEVGLVEKSNDKSLVDQ-------RRLENLIKDF 171
              + K G+L+ + + + +    LDLK +E+  +    ++  V+        RR +N  ++ 
Sbjct:   125 ERSKRGQLSEIVELLRKSQVDLDLKGEELRQMVTHLERYRVEVKEEKEHLRRTDNGRREL 184

Query:   172 CEQIELKEKDLRKIRSSIEECEKELVMKEKHASSLQSLIEDYAEELESKEKLYDEIKKSI 231
              E+IE K KDL  + + I +C+K +  +     SL+ LI+   E +E KEK  D++K  +
Sbjct:   185 EEEIERKTKDLTLVMNKIVDCDKRIETR-----SLE-LIKTQGE-VELKEKQLDQMKIDL 237

Query:   232 IQCETKLDCKKKELELTQTSIIXXXXXXXXXXXXXXXXQRIVRLRENELDSKEEKLDAMK 291
              +    ++ +KK L  TQT                    + + L  +++   E+  +   
Sbjct:   238 EKYCVDVNAEKKNLGRTQTH-------RRKLEEEIERKTKDLTLVMDKIAECEKLFERRS 290

Query:   292 EEMKKYFNDIELKEREFNGIRKCIEKRSQELTLKEKQLKCVQESLEGCRNEFEEKENELI 351
              E+ K   ++ELK ++   +   +E+   E+ +  + L+  Q        E E K  EL 
Sbjct:   291 LELIKTQGEVELKGKQLEQMDIDLERHRGEVNVVMEHLEKSQTRSRELAEEIERKRKELT 350

Query:   352 SV-----E--KLIDKCSEELELKKKHLCVIENSAAELSDECESNELELDLIQTMAIGYLK 404
             +V     E  K I+   EEL L++K L +  +       E +   L+L+L+ ++    LK
Sbjct:   351 AVLDKTAEYGKTIELVEEELALQQKLLDIRSSELVSKKKELDGLSLDLELVNSLN-NELK 409

Query:   405 Q----LKEKEKQFHSLKEALDER 423
             +    ++ K K+   ++  + ER
Sbjct:   410 ETVQRIESKGKELEDMERLIQER 432

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2181251 AT5G27230 [Arabidopsis thaliana (taxid:3702)]

 Score = 293 (108.2 bits), Expect = 6.3e-43, Sum P(3) = 6.3e-43
 Identities = 102/360 (28%), Positives = 163/360 (45%)

Query:   674 LLNKHDLGHNEVLQ-LLHLAPDPAMFVLDFIQHWKSQGT--GFEEDNV---KCCILVLEK 727
             L+ K  L  +E L   L   PDPA   LD         T  G+E   +     C L+L +
Sbjct:   556 LVEKQPLKESEDLSNALKCTPDPAKLFLDTSMALCPTNTEGGYEFKMLITSASCSLLLNQ 615

Query:   728 LKEVLPIMNPRVKGEAMKLAVEWKTKMGVGTLNSLEVLVFLQLLGTFELVASFNRVEIVE 787
             LK++LP +   VKG+A KLAV WK K+     + LEV+ FLQ LG F +V+ F   +++ 
Sbjct:   616 LKKLLPKIGHPVKGDAKKLAVYWKDKIAKSKRDQLEVICFLQFLGIFGIVSEFKADDLLG 675

Query:   788 LLWTISEHKQAPETCRALGFTDIVANFVRNLIGRKKHIAAIRFICAFKLTDIAKP-EAIF 846
             LL        +P+ C+ LG  D +  F++NLI     I AI +I +F +    +P  AI 
Sbjct:   676 LLDNSYWQTVSPDLCQFLGLDDAIPGFIQNLIKTGHRIKAIDYIYSFGMVHRFQPVSAII 735

Query:   847 KQYL---DDNISDIHRKGNNSSDAKVKAMDFEVNALTFLIECFKENKLESSLLIENIKQR 903
                L    ++    +R+  N S  +V A+D +V AL   I+C   +KLES   + +++++
Sbjct:   736 NDSLRITKESAEKSYREAKNESTTQVAAIDRQVRALRAAIKCISCHKLESEFQLGDLEEQ 795

Query:   904 IVQLEMAKADCRRHS-----TPAPSATIQLQLASRNNYNIGTSTPTNQPVPSHTNQPQHS 958
             I  L   + +    S     +  P +TI+ Q  +     +    P    +P   +    S
Sbjct:   796 IKSLLKLRRNTSNGSGSGSASSKPDSTIK-QSQTAKPPTVAEVAPVTSNIPLEPSTEAAS 854

Query:   959 GINHSIGFSASREQPQLQ----NNYKRPRIEPLTTRAYMPQIPASVNLHRSSPTMQHGPG 1014
               + S  FS   ++ + +    NN     I   T+  Y P    S+N   + P   +  G
Sbjct:   855 S-SASKPFSKKNKRGKKRSMSGNNQSSGHIASHTSNHY-PSHDYSLNQRLTWPVDNYDRG 912

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2171327 FRL1 "FRIGIDA like 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 289 (106.8 bits), Expect = 8.8e-24, Sum P(2) = 8.8e-24
 Identities = 86/288 (29%), Positives = 144/288 (50%)

Query:   682 HNEVLQLLHLAPDPAMFVLDFIQ--HWKSQGTGFEEDNVKCCILVLEKLKEVLPIMNPRV 739
             + EV   +  +PD A  VLD I+  ++    +G   D  +  +L++E L E+   +    
Sbjct:   128 NQEVSAAIRYSPDTASMVLDAIEGSNYTPSSSGRSFDVRRVFVLLMEVLIEINANITVDT 187

Query:   740 KGEAMKLAVEWKTKMGVGTLNSLEVLVFLQLLGTFELVASFNRVEIVELLWTISEHKQAP 799
             +  A KLA  WK+K+GV      E LVFL L+  FEL + F+  E+ + ++ I+++KQA 
Sbjct:   188 RNRAKKLAYHWKSKVGV---KPFEALVFLHLVAAFELGSEFDTEELSDYVFMIAKYKQAT 244

Query:   800 ETCRALGFT-DIVANFVRNLIGRKKHIAAIRFICAFKLTDIAKPEAIFKQYLDDNISDIH 858
               C  +G     V   ++ L+   K I A++F+    +TD  +P  + K Y+ D      
Sbjct:   245 LVCNKIGVDRKRVGKLIKTLLDSGKPILAVKFMYECGMTDEFEPIPVLKSYIKDCREAAL 304

Query:   859 R---KGNNSSDAKVKAMDFEVNALTFLIECFKENKLESSLLIENIKQRIVQLEMAKADCR 915
             R   + N S  ++ +A D EV+AL  LI+  K+  LES    E +++R+ +LE  KA  +
Sbjct:   305 RVCVEDNYSLKSQNEASDKEVSALKPLIKIIKDQNLESEFTQEKVEERVEELEKNKALRK 364

Query:   916 RHSTPAPSATIQLQLASRN-NYNIGTSTPT-NQPV---PSHTNQPQHS 958
             R++T  P    Q +   R  +   G+  P  +Q +   P     P+HS
Sbjct:   365 RNTTNPPKQEPQQKGKKRTRDCKNGSQVPVPSQQLLSRPEALLMPEHS 412

GO:0005634 "nucleus" evidence=ISM

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:1005716104 AT5G48385 "AT5G48385" [Arabidopsis thaliana (taxid:3702)]

 Score = 266 (98.7 bits), Expect = 1.2e-22, Sum P(2) = 1.2e-22
 Identities = 82/262 (31%), Positives = 126/262 (48%)

Query:   718 VKCCILVLEKLKE--VLPIMNPRVKGEAMKLAVEWKT-----KMGVGTLNSLEVLVFLQL 770
             ++C  ++L  L    +  +++  VK  A  +A  W        M     NSLE   FLQL
Sbjct:   253 MECLSILLSGLDRNCLAVVLSQNVKHRAKTIAEGWNPLLESLDMDACNGNSLEAHAFLQL 312

Query:   771 LGTFELVASFNRVEIVELLWTISEHKQAPETCRALGFTDIVANFVRNLIGRKKHIAAIRF 830
             L TF +VA F   E+++L+  +S  +QA E CR+LG  + +   +  L+   K I A+  
Sbjct:   313 LATFAIVADFKEDELLKLIPMVSRRRQAAELCRSLGLAEKMPGVIEVLVNSGKQIDAVNL 372

Query:   831 ICAFKLTDIAKPEAIFKQYLDD--NISDIHRKGNNSSDAKVKAMDFEVNALTFLIECFKE 888
               AF+LT+   P ++ K YL +    S   R GN S   + +  + E+  L  +I+C +E
Sbjct:   373 AFAFELTEQFSPVSLLKSYLIEARRSSPQGRPGNASPAVQDEFNERELIGLKTVIKCIEE 432

Query:   889 NKLESSLLIENIKQRIVQLEMAKADCRRHSTPA---PSATIQLQ-LASRNNYNI------ 938
             + LE    +E + +RI+QLE AKAD +R + P    P      Q   + NN NI      
Sbjct:   433 HSLEEQYPVEPLHKRILQLEKAKADKKRATEPMKPQPKRPRGAQPRVTDNNNNINNNKTG 492

Query:   939 -GTSTPTNQPVPSHTNQPQHSG 959
              G   P   P   + N+P  SG
Sbjct:   493 YGRVIPERYPQYVYDNRPFLSG 514

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2082214 AT3G12190 "AT3G12190" [Arabidopsis thaliana (taxid:3702)]

 Score = 236 (88.1 bits), Expect = 1.5e-18, P = 1.5e-18
 Identities = 74/253 (29%), Positives = 138/253 (54%)

Query:     9 EELRLAESKKEILRRSYDLAHAQANSVLNFTVQWKDLEEHLDISMKSLEKQSNDADSKIR 68
             ++LR+A+ KKE LRRS   A ++A+ VL+FT+ W+DLE H D     L K+S + +SK +
Sbjct:     4 KKLRVAKWKKERLRRSLMKAESKASDVLSFTLSWRDLESHFDSIESDLVKRSQEIESKEK 63

Query:    69 LLDQRAKEIESKESDLVLAERRIKECNFELACKEKQLELVRKRIGECECELQLKEGELNL 128
              L++R+ E+ESK   L   E+R +E N     + +  E  ++++   + E++ +E +  L
Sbjct:    64 HLEKRSHELESKGKIL---EKRAREINTADGFR-RDFEEKQRKLDRLKREIESEEKKRFL 119

Query:   129 VKKSVEEWLEKLDLKM--KEVGLVEKSNDKSLVDQRRLENLIKDFCEQIELKEKDLRKIR 186
             V+K   E   K +LK   ++V  ++K ND  L D +  + + ++   Q E  E+ L+K +
Sbjct:   120 VQKLNRE--RKFELKRTREQVEALQK-NDMKL-DVKHSKEMSEELLVQQEKYEEILKKKK 175

Query:   187 ---SSIEECEKELVMKEKHASSLQSLIEDYAEEL--ESKEKLY-----DEIKKSIIQCET 236
                  +++C ++L ++E     +   +    EEL  E K+ L      +E ++ +     
Sbjct:   176 LEEKKLKDCTRDLALREGDLRWVSMRMTKRCEELRWEKKKNLVLCKRNEEAERKLKHLNR 235

Query:   237 KLDCKKKELELTQ 249
              L+ K+KE++L +
Sbjct:   236 ALEEKQKEVDLIE 248

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2031875 LINC2 "LITTLE NUCLEI2" [Arabidopsis thaliana (taxid:3702)]

 Score = 248 (92.4 bits), Expect = 6.0e-17, P = 6.0e-17
 Identities = 118/445 (26%), Positives = 213/445 (47%)

Query:    11 LRLAESKKEILRRSYDLAHAQANSVLNFTVQWKDLEEHLDISMKSLEKQSNDADSKIRLL 70
             L   E ++E LR++  L   Q    L   ++ +  EE+  I + S E +  +A++ +  +
Sbjct:   142 LTTVEQREENLRKALGL-EKQCVQELEKALR-EIQEENSKIRLSS-EAKLVEANALVASV 198

Query:    71 DQRAKEIESK--ESDLVLAERRIKECNFELACKE---KQLELVRKRIGECECELQLKEGE 125
             + R+ ++E+K   ++  LAE   K    +L  KE   ++  L ++R+   + E +  EG 
Sbjct:   199 NGRSSDVENKIYSAESKLAEATRKSSELKLRLKEVETRESVLQQERLSFTK-ERESYEGT 257

Query:   126 LNLVKKSVEEWLEKLDLKMKEVGLVEKSNDKSLVDQRRLENLIKDFCEQIELKEKDL--- 182
                 ++ + EW +KL  + KE  + E+  +   ++QR  E  + +  ++++LKEK+L   
Sbjct:   258 FQKQREYLNEWEKKL--QGKEESITEQKRN---LNQR--EEKVNEIEKKLKLKEKELEEW 310

Query:   183 -RKIRSSI---EECEK-------ELVMKEKHASSLQSLIEDYAEELES-KEKLY----DE 226
              RK+  S+   +E E+       EL  KEK A +LQ  +     EL + +EKL      E
Sbjct:   311 NRKVDLSMSKSKETEEDITKRLEELTTKEKEAHTLQITLLAKENELRAFEEKLIAREGTE 370

Query:   227 IKKSIIQCETKLDCKKKELELTQTSIIXXXXXXXXXXXXXXXXQRIVRLRENELDSKEEK 286
             I+K I   +  L  K  E EL    I                 Q++      E+D  EEK
Sbjct:   371 IQKLIDDQKEVLGSKMLEFELECEEIRKSLDKELQRKIEELERQKV------EIDHSEEK 424

Query:   287 LDAMKEEMKKYFNDIELKEREFNGIRKCIEKRSQ-------ELTLKEKQLKCVQESLEGC 339
             L+   + M K F+ +  KE +     K I++R +        L+L+++QL   +ESLE  
Sbjct:   425 LEKRNQAMNKKFDRVNEKEMDLEAKLKTIKEREKIIQAEEKRLSLEKQQLLSDKESLEDL 484

Query:   340 RNEFEEKENELISVEKLIDKCSEELELKKKHLCVIENSAAELSDECESNELELDLIQTMA 399
             + E E+   E+   E++I++  + LE+KK+         +EL  + E + +  + + +  
Sbjct:   485 QQEIEKIRAEMTKKEEMIEEECKSLEIKKEEREEYLRLQSELKSQIEKSRVHEEFL-SKE 543

Query:   400 IGYLKQLKEK-EKQFHSLKEALDER 423
             +  LKQ KE+ EK++    E LDE+
Sbjct:   544 VENLKQEKERFEKEW----EILDEK 564

GO:0005634 "nucleus" evidence=ISM

GO:0005654 "nucleoplasm" evidence=IDA

GO:0006997 "nucleus organization" evidence=IGI

GO:0006342 "chromatin silencing" evidence=RCA

GO:0007267 "cell-cell signaling" evidence=RCA

GO:0009616 "virus induced gene silencing" evidence=RCA

GO:0010050 "vegetative phase change" evidence=RCA

GO:0010267 "production of ta-siRNAs involved in RNA interference" evidence=RCA

GO:0016572 "histone phosphorylation" evidence=RCA

GO:0035196 "production of miRNAs involved in gene silencing by miRNA" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

TAIR|locus:2087872 AT3G22440 "AT3G22440" [Arabidopsis thaliana (taxid:3702)]

 Score = 218 (81.8 bits), Expect = 1.0e-15, Sum P(2) = 1.0e-15
 Identities = 84/292 (28%), Positives = 134/292 (45%)

Query:   694 DPAMFVLDFIQHW---KSQGTGFEEDNVKCCILVLEKLKEVL--PIMN-------PRVKG 741
             DPAM VL+ I       ++G     D    C+++LE L  V+  P++        P VK 
Sbjct:   170 DPAMLVLEAISEVFPVDTRGDKVSNDYGWACVVILESLTPVIVDPVIGKSRLLVTPSVKE 229

Query:   742 EAMKLAVEWKTKM---G-VGTLNSLEVLVFLQLLGTFELVASFNRVEIVELLWTISEHKQ 797
             +A ++A  WK  +   G +  + + +V  FLQ L TF +V S +     +L+   +  KQ
Sbjct:   230 KAKEIAETWKKSLEERGRIENVKTPDVHTFLQHLVTFGIVKSEDLALYRKLVVGSAWRKQ 289

Query:   798 APETCRALGFTDIVANFVRNLIGRKKHIAAIRFICAFKLTDIAKPEAIFKQYLDD---NI 854
              P+   ++G  D + + +  LI R + + A+ F     L D   P  + K YL D   + 
Sbjct:   290 MPKLAVSVGLGDQMPDMIEELISRGQQLDAVHFTYEVGLVDKFPPVPLLKAYLRDAKKSA 349

Query:   855 SDIHRKGNNSSDAKVKAMDFEVNALTFLIECFKENKLESSLLIENIKQRIVQLEMAKADC 914
             + I    +N+  A       E +AL  +++C +E KLE     EN+K+R+ QLE  K + 
Sbjct:   350 ASIMEDSSNTGRATHLVARKEQSALKAVLKCIEEYKLEEEFPPENLKKRLDQLEKTKTEK 409

Query:   915 RRHSTPAPSATIQLQLASRNNYNIGTSTP------TNQPVPSHT--NQPQHS 958
             R+     P+A +     +R +YN G   P      TN  V S      P HS
Sbjct:   410 RK-----PAA-VPANKRTRASYN-GPMPPAKAGRITNAYVSSFPFIRSPSHS 454

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0000956 "nuclear-transcribed mRNA catabolic process" evidence=RCA

GO:0006635 "fatty acid beta-oxidation" evidence=RCA

GO:0016558 "protein import into peroxisome matrix" evidence=RCA

TAIR|locus:2826175 FRL2 "AT1G31814" [Arabidopsis thaliana (taxid:3702)]

 Score = 228 (85.3 bits), Expect = 5.1e-15, Sum P(2) = 5.1e-15
 Identities = 82/293 (27%), Positives = 139/293 (47%)

Query:   680 LGHNEVL-QLLHLAPDPAMFVLDFIQ---HWKSQGTGFEE---DNVKCCILVLEKLKEVL 732
             L  NE L   +  + +PA  VLD I+   H  S  +       D  +  +L+LE L E+ 
Sbjct:   114 LSINEELPNAIRCSENPAPLVLDAIEGSYHCSSPSSSSSARAIDVKRIFVLLLEALIEIN 173

Query:   733 PIMNPRVKGEAMKLAVEWKTKMGVGTLNSLEVLVFLQLLGTFELVASFNRVEIVELLWTI 792
               +   ++  A  +A +WK    +G   S E L FL L+  FEL + F+  EI + ++ I
Sbjct:   174 ANLTNDLRERARTIAYDWKPN--IGNKPS-EALGFLHLVAAFELGSLFSTEEICDYIFLI 230

Query:   793 SEHKQAPETCRALGFT-DIVANFVRNLIGRKKHIAAIRFICAFKLTDIAKPEAIFKQYLD 851
             S++KQA   C+ +G   + +   V+  +   + + AIRFI   ++    +P +I K  L 
Sbjct:   231 SKYKQATTICKKIGLDRNRIGVLVQKFLDTGRLLVAIRFIYENEMVGEFEPVSILKTSLK 290

Query:   852 DNISDIHR---KGNNSSDAKVKAMDFEVNALTFLIECFKENKLESSLLIENIKQRIVQLE 908
             ++     R   +GN S   + +A D E++AL  +I+  KE  +ES  + E +++ + +LE
Sbjct:   291 NSREAAKRVCAEGNYSLKVQNEATDKELSALRAVIKVVKEKNIESEFMEEKLEECVKELE 350

Query:   909 MAKADCRR---HSTPAPSATIQLQLASRNNYNI--GTSTPTNQPVPSHTNQPQ 956
               KA  +R    ++PA     Q Q        +  G+S   N  +P    Q Q
Sbjct:   351 DQKAQRKRATKFNSPANPQQPQEQKVDNKRPRVANGSSMEYNLTIPPLRPQQQ 403

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=IMP

WB|WBGene00011696 eea-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 225 (84.3 bits), Expect = 2.0e-14, P = 2.0e-14
 Identities = 89/362 (24%), Positives = 165/362 (45%)

Query:     6 NNKEELRLAESKKEILRRSYDLAHAQANSVLNFTVQWKDLEEHLDISMKSLEKQSNDADS 65
             N+ +E +LAES+K+  +   +L    A+ V N T+Q   L+E+    M+ +      A  
Sbjct:   453 NDLKE-KLAESEKKATKYKNELKE-HADLVENLTLQLNKLQENSKDLMEKISAGEGGAKM 510

Query:    66 KIRLLDQRAKEIESKESDLVLAERRIKECNFELACKEKQLELVRKRIGECECELQLKEGE 125
              I  L+Q   ++ +   +L  +  + K+ + EL  K  +LE   K++ + E     KE +
Sbjct:   511 AIEQLEQEKVKLTN---ELQTSSEKTKKASGELEAKISELE---KKLRDAEASRTDKEQK 564

Query:   126 LNLVKKSVEEWLEKLDLKMKEVG--LVEKSNDKSLVDQRRLENLIKDFCEQIELKEKDLR 183
                 K+S E  L + + ++K  G   VE   +     Q+  +  +K   + +   EK+L 
Sbjct:   565 WKQEKESFERKLAEAEDEIKRKGERFVEMEKEMEEERQKATDRTLK-LKDALVNSEKNLE 623

Query:   184 KIRSSIEECEKELVMKEKHASSLQSLIEDYAEELESKEKLYDEIKKSIIQCETKLDCKKK 243
              I+   E+ EK +  K+ H    +  IED  ++LE  EK   E++ S+   +T +  K+ 
Sbjct:   624 TIKKESEDREKIVREKDAHLEENKKRIEDAVQKLEEAEKRARELEASVSSRDTTVSTKES 683

Query:   244 ELELTQTSIIXXXXXXXXXXXXXXXXQRIVRLRENELDSKEEKLDAMKEEMKKYFNDIEL 303
             EL     S +                Q  V    NE+  K+++++ +  EM+      + 
Sbjct:   684 EL-----SELKGKLTESNSFIEELKVQ--VEKVSNEISEKQQEVENLMAEMRDKEAHWKT 736

Query:   304 KEREFNGIRKCIEKRSQELTLKEKQLKCVQESLEGCRNEFEEKENELISVEKLIDKCSEE 363
             K  EF       ++ ++E +     LK VQE L   +    E++N+LISV+  +++   E
Sbjct:   737 KRDEFEAQMLRNQEDNEEAS---STLKSVQEQLMKEKETSGEEKNQLISVKSQLEELKTE 793

Query:   364 LE 365
             +E
Sbjct:   794 VE 795

GO:0046872 "metal ion binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006897 "endocytosis" evidence=IMP

GO:0030139 "endocytic vesicle" evidence=IDA

GO:0005769 "early endosome" evidence=IDA

GO:0032266 "phosphatidylinositol-3-phosphate binding" evidence=ISS;IMP

DICTYBASE|DDB_G0286985 zipA "zipper-like domain-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 222 (83.2 bits), Expect = 3.3e-14, P = 3.3e-14
 Identities = 84/437 (19%), Positives = 208/437 (47%)

Query:    15 ESKK--EILRR--SYDLAHAQANSVLNFTVQWKDLEEHLDISMKSLEKQSNDADSKIRLL 70
             E K+  E+L R   Y+  +       +F ++   L + L+      +  +N+  ++I  L
Sbjct:   391 EKKRTAELLERLEMYEKMNKNITDEKDFQIE--KLVDQLEAKQSEQQTTTNNLQNEISQL 448

Query:    71 DQR--------AKEIESKESDLVLAERRIKECNFELACKEKQL-ELVRKRIG--ECECE- 118
              Q+        ++ ++SK ++L   +   ++   +L  K+ +L E  +K+    E + E 
Sbjct:   449 KQQLASNQSTESQALQSKITELSQLQSEFEKLQNQLQSKDSELLETSKKQSALLEQQSED 508

Query:   119 LQLKEGELNLVKKSVEEWLEKLDLKMKEVGLVEKSNDKSLVDQRRLENLIKDFCEQIELK 178
              Q K+ +L  V+ ++++ L++L  K +E+      N KS ++Q+  ++  KD  ++++  
Sbjct:   509 SQSKDEKLKSVELNLQQTLQQLQSKDQEL-----QNVKSQLEQQSEDSESKD--QKLKSV 561

Query:   179 EKDLRKIRSSIEECEKELVMKEKHASS----LQSLIEDYAEELESKEKLYDEIKKSIIQC 234
             E  L++    +++ + +L  + +H  S    L+S+  +  ++L+SK+      K   ++C
Sbjct:   562 ELTLQQTLQQLQDVKSQLEQQSEHNESKDEKLKSIELNLQQQLQSKDSELSS-KDEQLKC 620

Query:   235 -ETKLDCKKKELELTQTSIIXXXXXXXXXXXXXXXXQRIVRLRENELDSKEEKLDAMKEE 293
              E++L   K++L  +Q+S                  +  ++ ++ +L +K+ ++ +++ +
Sbjct:   621 LESELSSVKEQLS-SQSSNTDSELSSVKDQLLSKDSE--LKSKDEQLSNKDSQIKSIESD 677

Query:   294 MKKYFNDIELKEREFNGIRKCIEKRSQELTLKEKQLKCVQESLEGCRNEFEEKENELISV 353
             ++   + +  K++E    +  +  + ++L+ K+ Q+K ++  L+  +++   K+ EL S 
Sbjct:   678 LQSVKDQLSSKDQELQSTKDQLSSKDEQLSNKDTQIKSIESDLQSVKDQLSSKDQELQST 737

Query:   354 EKLIDKCSEELELKKKHLCVIENSAAELSDE--CESNELE-LDLIQTMAIGYLKQLKEKE 410
             +  +    +EL+  K  L   +       D+  C+S+  + L    T       QL  K+
Sbjct:   738 KDQLSSKDQELQSTKDQLSTKDQELQSAKDQLSCQSSTTDQLSAKDTELQSTKDQLSSKD 797

Query:   411 KQFHSLKEALDERWQDL 427
              +  S+K+ L  +  +L
Sbjct:   798 SELQSIKDQLSTKDSEL 814

GO:0005615 "extracellular space" evidence=IDA

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0044351 "macropinocytosis" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	1060
pfam07899	293	pfam07899, Frigida, Frigida-like protein	2e-53
pfam07899	293	pfam07899, Frigida, Frigida-like protein	1e-38
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	7e-17
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-16
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-15
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	3e-15
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	4e-15
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	9e-15
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	3e-14
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	9e-14
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	5e-13
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	1e-12
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	2e-12
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	3e-12
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	4e-12
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	4e-12
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	4e-12
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	5e-12
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	6e-12
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	7e-12
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	2e-11
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	2e-11
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	3e-11
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	5e-11
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	8e-11
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	5e-10
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	6e-10
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	6e-10
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	6e-10
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	8e-10
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	2e-09
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	4e-09
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	5e-09
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	8e-09
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	1e-08
PRK02224	880	PRK02224, PRK02224, chromosome segregation protein	5e-08
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	1e-07
pfam02463	1162	pfam02463, SMC_N, RecF/RecN/SMC N terminal domain	1e-07
TIGR00606	1311	TIGR00606, rad50, rad50	3e-07
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	6e-07
pfam02463	1162	pfam02463, SMC_N, RecF/RecN/SMC N terminal domain	6e-07
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	8e-07
pfam10174	774	pfam10174, Cast, RIM-binding protein of the cytoma	1e-06
TIGR00606	1311	TIGR00606, rad50, rad50	2e-06
PRK01156	895	PRK01156, PRK01156, chromosome segregation protein	3e-06
pfam13166	713	pfam13166, AAA_13, AAA domain	5e-06
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	6e-06
pfam02463	1162	pfam02463, SMC_N, RecF/RecN/SMC N terminal domain	1e-05
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	2e-05
pfam10174	774	pfam10174, Cast, RIM-binding protein of the cytoma	2e-05
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	3e-05
PRK02224	880	PRK02224, PRK02224, chromosome segregation protein	3e-05
PRK01156	895	PRK01156, PRK01156, chromosome segregation protein	3e-05
pfam02463	1162	pfam02463, SMC_N, RecF/RecN/SMC N terminal domain	4e-05
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	6e-05
pfam05557	722	pfam05557, MAD, Mitotic checkpoint protein	6e-05
TIGR00618	1042	TIGR00618, sbcc, exonuclease SbcC	8e-05
COG4372	499	COG4372, COG4372, Uncharacterized protein conserve	1e-04
TIGR00606	1311	TIGR00606, rad50, rad50	2e-04
pfam05557	722	pfam05557, MAD, Mitotic checkpoint protein	2e-04
COG4942	420	COG4942, COG4942, Membrane-bound metallopeptidase	2e-04
PRK12704	520	PRK12704, PRK12704, phosphodiesterase; Provisional	3e-04
pfam05557	722	pfam05557, MAD, Mitotic checkpoint protein	4e-04
TIGR03319	514	TIGR03319, RNase_Y, ribonuclease Y	4e-04
pfam02463	1162	pfam02463, SMC_N, RecF/RecN/SMC N terminal domain	5e-04
PRK12704	520	PRK12704, PRK12704, phosphodiesterase; Provisional	5e-04
TIGR00606	1311	TIGR00606, rad50, rad50	6e-04
pfam13166	713	pfam13166, AAA_13, AAA domain	7e-04
PRK02224	880	PRK02224, PRK02224, chromosome segregation protein	0.001
COG0610	962	COG0610, COG0610, Type I site-specific restriction	0.001
COG0466	782	COG0466, Lon, ATP-dependent Lon protease, bacteria	0.003
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	0.004
COG0610	962	COG0610, COG0610, Type I site-specific restriction	0.004
COG5022	1463	COG5022, COG5022, Myosin heavy chain [Cytoskeleton	0.004

>gnl|CDD|219629 pfam07899, Frigida, Frigida-like protein

 Score =  188 bits (479), Expect = 2e-53
 Identities = 101/252 (40%), Positives = 146/252 (57%), Gaps = 13/252 (5%)

Query: 683 NEVLQLLHLAPDPAMFVLD-----FIQHWKSQGTGFEEDNVKCCILVLEKLKEVLPIMNP 737
            EV   L  APDPA  VLD     +    K        D  + C+L+LE+L  V P ++P
Sbjct: 43  EEVPAALRCAPDPAKLVLDAIEGFYPPDSKGGKEDKMVDVRRSCVLLLEQLVRVNPPISP 102

Query: 738 RVKGEAMKLAVEWKTKM----GVGTLNSLEVLVFLQLLGTFELVASFNRVEIVELLWTIS 793
            VK EA KLAVEWK K+    GV    SLE L FLQLL  F LV+ F++ E+++L   +S
Sbjct: 103 DVKEEAKKLAVEWKAKLEEDGGVENGKSLEALGFLQLLAAFGLVSEFDQDELLKLFVMVS 162

Query: 794 EHKQAPETCRALGFTDIVANFVRNLIGRKKHIAAIRFICAFKLTDIAKPEAIFKQYLDD- 852
             KQAPE CR+LG  D + + +  LI R + I A+RFI  F L D   P ++ K YL+D 
Sbjct: 163 RRKQAPELCRSLGLADKMPDLIEELIKRGRQIDAVRFIYEFGLVDKFPPVSLLKAYLEDA 222

Query: 853 --NISDIHRKGNNSSDAKVKAMDFEVNALTFLIECFKENKLESSLLIENIKQRIVQLEMA 910
             +   +  + N+S  A+ +A+D E+ AL  +I+C +++KLES   +E +++RI +LE A
Sbjct: 223 KKSAKKV-CRENSSLRAQSEAIDKELAALRAVIKCIEDHKLESEYPLEPLEERIEELEKA 281

Query: 911 KADCRRHSTPAP 922
           KAD ++ +  A 
Sbjct: 282 KADKKKATEVAS 293

This family is composed of plant proteins that are similar to FRIGIDA protein expressed by Arabidopsis thaliana. This protein is probably nuclear and is required for the regulation of flowering time in the late-flowering phenotype. It is known to increase RNA levels of flowering locus C. Allelic variation at the FRIGIDA locus is a major determinant of natural variation in flowering time. Length = 293

>gnl|CDD|219629 pfam07899, Frigida, Frigida-like protein

 Score =  145 bits (369), Expect = 1e-38
 Identities = 71/162 (43%), Positives = 99/162 (61%), Gaps = 5/162 (3%)

Query: 499 CTMITGKNLQLLLNQHLQKHDLVFGEISHTLTKACDPASLVLDAMEGFYPPHSREGDMEF 558
           C  +  + L   + ++ ++   +  E+   L  A DPA LVLDA+EGFYPP S+ G  E 
Sbjct: 19  CEKMDSRGLLKFVIENRKELASLREEVPAALRCAPDPAKLVLDAIEGFYPPDSKGGK-ED 77

Query: 559 DVSIIRRTCILLLEQLSSVTPEINPQVRDEAMKVAGEWKKKM----RVAEDNSLEVLGFL 614
            +  +RR+C+LLLEQL  V P I+P V++EA K+A EWK K+     V    SLE LGFL
Sbjct: 78  KMVDVRRSCVLLLEQLVRVNPPISPDVKEEAKKLAVEWKAKLEEDGGVENGKSLEALGFL 137

Query: 615 HLLAAYGLGPSFDGIELESLLDIVAQHRQTSKLRQSLGFAEK 656
            LLAA+GL   FD  EL  L  +V++ +Q  +L +SLG A+K
Sbjct: 138 QLLAAFGLVSEFDQDELLKLFVMVSRRKQAPELCRSLGLADK 179

This family is composed of plant proteins that are similar to FRIGIDA protein expressed by Arabidopsis thaliana. This protein is probably nuclear and is required for the regulation of flowering time in the late-flowering phenotype. It is known to increase RNA levels of flowering locus C. Allelic variation at the FRIGIDA locus is a major determinant of natural variation in flowering time. Length = 293

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 85.9 bits (213), Expect = 7e-17
 Identities = 78/318 (24%), Positives = 154/318 (48%), Gaps = 14/318 (4%)

Query: 161 QRRLENLIKDFCEQIELKEKDLRKIRSSIEECEKELVMKEKHASSLQSLIED-----YAE 215
           +R+LE   ++  E++E   ++L K    +E  + E   + +    L++ + +        
Sbjct: 178 ERKLERTEEN-LERLEDLLEELEKQLEKLER-QAEKAERYQ---ELKAELRELELALLLA 232

Query: 216 ELESKEKLYDEIKKSIIQCETKLDCKKKELELTQTSIIELSLELHLEEEKLESLQRIVRL 275
           +L+   K  +E+++ + + E +L+  ++ELE  +  I EL  EL    E+LE LQ  +  
Sbjct: 233 KLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLE 292

Query: 276 RENELDSKEEKLDAMKEEMKKYFNDIELKEREFNGIRKCIEKRSQELTLKEKQLKCVQES 335
            + E++  E ++  ++E +++  N++E  E     +++ IE   +EL  +E  L+ +++ 
Sbjct: 293 LKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQL 352

Query: 336 LEGCRNEFEEKENELI----SVEKLIDKCSEELELKKKHLCVIENSAAELSDECESNELE 391
           L       EE E +L      +E+L +   EEL   +  L  I N   EL  E ES E  
Sbjct: 353 LAELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNELEELKREIESLEER 412

Query: 392 LDLIQTMAIGYLKQLKEKEKQFHSLKEALDERWQDLEIKERKFEERVKEFELREKEIESI 451
           L+ +        ++LKE E +   L+  L+E  ++LE  E + EE     +  E+E+  +
Sbjct: 413 LERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRLKELERELAEL 472

Query: 452 RKAVEDRSKNLELKEKKL 469
           ++ ++   K L   E +L
Sbjct: 473 QEELQRLEKELSSLEARL 490

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 84.4 bits (209), Expect = 2e-16
 Identities = 79/333 (23%), Positives = 160/333 (48%), Gaps = 15/333 (4%)

Query: 75  KEIESKESDLVLAERRIKECNFELACKEKQLELVRKRIGECECELQLKEG----ELNLVK 130
           +  E  E  L   E  ++     L   EKQLE + ++  + E   +LK      EL L+ 
Sbjct: 172 ERKEEAERKLERTEENLERLEDLLEELEKQLEKLERQAEKAERYQELKAELRELELALLL 231

Query: 131 KSVEEWLEKLDLKMKEVGLVEKSNDKSLVDQRRLENLIKDFCEQIELKEKDLRKIRSSIE 190
             ++E  ++L+   +E+  +E+  ++   +    E       ++IE  + +L ++R  +E
Sbjct: 232 AKLKELRKELEELEEELSRLEEELEELQEELEEAE-------KEIEELKSELEELREELE 284

Query: 191 ECEKELVMKEKHASSLQSLIEDYAEELESKEKLYDEIKKSIIQCETKLDCKKKELELTQT 250
           E ++EL+  ++    L+  I    E LE  E   +E+++ + + + K++  K+ELE  +T
Sbjct: 285 ELQEELLELKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERET 344

Query: 251 SIIELSLELHLEEEKLESLQRIVRLRENELDSK----EEKLDAMKEEMKKYFNDIELKER 306
            + EL   L   EE  E L+  +     EL+       E+L  ++ E+ +  N++E  +R
Sbjct: 345 LLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNELEELKR 404

Query: 307 EFNGIRKCIEKRSQELTLKEKQLKCVQESLEGCRNEFEEKENELISVEKLIDKCSEELEL 366
           E   + + +E+ S+ L   +++LK ++  LE  + E EE   EL  +E+ +++  + L+ 
Sbjct: 405 EIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRLKE 464

Query: 367 KKKHLCVIENSAAELSDECESNELELDLIQTMA 399
            ++ L  ++     L  E  S E  LD ++   
Sbjct: 465 LERELAELQEELQRLEKELSSLEARLDRLEAEQ 497

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 80.9 bits (200), Expect = 2e-15
 Identities = 82/356 (23%), Positives = 166/356 (46%), Gaps = 21/356 (5%)

Query: 121 LKEGELNLVKKSVEEWLEKLDLKMKEVGLVEKSNDKSLVDQRRLENLIKDFCEQIELKE- 179
            +E E  L  +  EE LE+L+  ++E+    +   + L  Q       ++   ++   E 
Sbjct: 174 KEEAERKL--ERTEENLERLEDLLEEL----EKQLEKLERQAEKAERYQELKAELRELEL 227

Query: 180 ----KDLRKIRSSIEECEKELVMKEKHASSLQSLIEDYAEELESKEKLYDEIKKSIIQCE 235
                 L+++R  +EE E+EL   E+    LQ  +E+  +E+E  +   +E+++ + + +
Sbjct: 228 ALLLAKLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQ 287

Query: 236 TKLDCKKKELELTQTSIIELSLELHLEEEKLESLQRIVRLRENELDSKEEKLDAMKEEMK 295
            +L   K+E+E       EL  E+ L  E+LE L+  +   E  L+  +EK++A+KEE++
Sbjct: 288 EELLELKEEIE-------ELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELE 340

Query: 296 KYFNDIELKEREFNGIRKCIEKRSQELTLKEKQLKCVQESLEGCRNEFEEKENELISVEK 355
           +    +E  E+    + +  E+  ++L      L+ ++E  E  R E  E E EL  +  
Sbjct: 341 ERETLLEELEQLLAELEEAKEELEEKL---SALLEELEELFEALREELAELEAELAEIRN 397

Query: 356 LIDKCSEELELKKKHLCVIENSAAELSDECESNELELDLIQTMAIGYLKQLKEKEKQFHS 415
            +++   E+E  ++ L  +     +L +E +  E EL+ +QT      ++L+E E+Q   
Sbjct: 398 ELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEE 457

Query: 416 LKEALDERWQDLEIKERKFEERVKEFELREKEIESIRKAVEDRSKNLELKEKKLSN 471
           L++ L E  ++L   + + +   KE    E  ++ +            + E   S 
Sbjct: 458 LRDRLKELERELAELQEELQRLEKELSSLEARLDRLEAEQRASQGVRAVLEALESG 513

Length = 1163

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 80.1 bits (198), Expect = 3e-15
 Identities = 109/460 (23%), Positives = 206/460 (44%), Gaps = 49/460 (10%)

Query: 56  LEKQSNDADSKIRLLDQRAKEIESKESDLVLAERRIKECNFELACKEKQLELVRKRIGEC 115
            E    +    I+ + +R + +E         E  IKE       KEK+LE V + I E 
Sbjct: 160 YENAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKE-------KEKELEEVLREINEI 212

Query: 116 ECELQLKEGELNLVKKSVEEWLEKLDLKMKEVGLVEKSNDKSLVDQRRLENLIKDFCEQI 175
             EL     EL  ++K V+E LE+L  +++E+    +S + S    R+LE  I++  E+I
Sbjct: 213 SSELPELREELEKLEKEVKE-LEELKEEIEELEKELESLEGSK---RKLEEKIRELEERI 268

Query: 176 ELKEKDLRKIRSSIEECEKELVMKEKHASSLQSLIEDYAEELESKEKL---YDEIKKSII 232
           E  +K++ ++   ++E  KEL  K +    L    E+Y +EL   EK     +E    I 
Sbjct: 269 EELKKEIEELEEKVKEL-KELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIE 327

Query: 233 QCETKLDCKKKELELTQTSIIELSLELHLEEEKLESLQRIVRLREN--ELDSKE-----E 285
           +   +L+ K++ LE  +  + EL   L   EE+ E  +     +E    L  +      E
Sbjct: 328 ERIKELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTPE 387

Query: 286 KLDAMKEEMKKYFNDIELKEREFNGIRKCIEKRSQELTLKEKQLKCVQESLEGCRNEFEE 345
           KL+   EE++K   +IE +  +       ++K  +EL    ++LK  +     C  E  E
Sbjct: 388 KLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRELTE 447

Query: 346 KEN---------ELISVEKLIDKCSEELELKKKHLCVIENSAA---------ELSDECES 387
           +           EL  +EK + +  E+    +K L  +E             EL+++ + 
Sbjct: 448 EHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQLKE 507

Query: 388 NELELDLIQTMAIGYLKQLKEKEKQFHSLKEALDERWQDLEIKERKFEERVKEFELREKE 447
            E +L          L++L++K +++  LKE L +   +++  +++  E+++E + +  E
Sbjct: 508 LEEKLKKYN------LEELEKKAEEYEKLKEKLIKLKGEIKSLKKEL-EKLEELKKKLAE 560

Query: 448 IESIRKAVEDRSKNL--ELKEKKLSNNLHLQVKIEQPESL 485
           +E     +E+    L  EL+E    +   L+ ++++ E  
Sbjct: 561 LEKKLDELEEELAELLKELEELGFESVEELEERLKELEPF 600

Length = 880

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 80.1 bits (198), Expect = 4e-15
 Identities = 77/303 (25%), Positives = 157/303 (51%), Gaps = 12/303 (3%)

Query: 174 QIELKEKDLRKIRSSIEECEKELVMKEKHASSLQSLIEDYAEELESKEKLYDEIKKSIIQ 233
           +++  E++L ++ + +E+ E+EL   +    SL+ L+E+   +LE  E+  +E+K+ +  
Sbjct: 668 ELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAA 727

Query: 234 CETKLDCKKKELELTQTSIIELSLELHLEEEKLESLQRIVRLRENELDSKEEKLDAMKEE 293
            E +L+  +  LE  +  + EL  EL   +E+LE L+  +   E  L   +E+++ ++E+
Sbjct: 728 LEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEK 787

Query: 294 MKKYFNDIELKEREFNGIRKCIEKRSQELTLKEKQLKCVQESLEGCRNEFEEKENELISV 353
            +    ++E  E E     + ++   +EL   E++ + +++ +E    E EE E +L  +
Sbjct: 788 RQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDEL 847

Query: 354 EKLIDKCSEELELKKKHLCVIENSAAELSDECESNELELDLIQTMAIGYLKQLKEKEKQF 413
           E+ +++  +ELE  K+ L  +E    EL DE +  E E + ++       ++L+E E + 
Sbjct: 848 EEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELE-------EELRELESEL 900

Query: 414 HSLKEA---LDERWQDLEIKERKFEERVK--EFELREKEIESIRKAVEDRSKNLELKEKK 468
             LKE    L ER ++LE K  + E  +   E EL E+  +++   +E   + LE + + 
Sbjct: 901 AELKEEIEKLRERLEELEAKLERLEVELPELEEELEEEYEDTLETELEREIERLEEEIEA 960

Query: 469 LSN 471
           L  
Sbjct: 961 LGP 963

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 79.0 bits (195), Expect = 9e-15
 Identities = 76/343 (22%), Positives = 157/343 (45%), Gaps = 8/343 (2%)

Query: 28  AHAQANSVLNFTVQWKDLEEHLDISMKSLEKQSNDADSKIRLLDQRAKEIESKESDLVLA 87
                 S L    + K+LEE L      LEK   +  S    L      +E     L   
Sbjct: 655 GSRNKRSSLAQKRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEEL 714

Query: 88  ERRIKECNFELACKEKQLELVRKRIGECECELQLKEGELNLVKKSVEEWLEKLDLKMKEV 147
           ER+++E   ELA  E++LE ++ R+ E E EL+  E EL  +++ +EE  E+L+   + +
Sbjct: 715 ERQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEAL 774

Query: 148 GLVEKSNDKSLVDQRRLENLIKDFCEQIELKEKDLRKIRSSIEECEKELVMKEKHASSLQ 207
             +++  ++    ++ L+  +++  E++E  E+ L  +   +E  E+     E+    L+
Sbjct: 775 AKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELE 834

Query: 208 SLIEDYAEELESKEKLYDEIKKSIIQCETKLDCKKKELELTQTSIIELSLELHLEEEKLE 267
             IE+  E+L+  E+  +E++K + + + +L+  + E E  +  + EL  E    EE+L 
Sbjct: 835 EEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELR 894

Query: 268 SLQRIVRLRENELDSKEEKLDAMKEEMKKYFNDIELKEREFNGIRKC-----IEKRSQEL 322
            L+  +   + E++   E+L+ ++ ++++   ++   E E     +      +E+  + L
Sbjct: 895 ELESELAELKEEIEKLRERLEELEAKLERLEVELPELEEELEEEYEDTLETELEREIERL 954

Query: 323 TLKEKQLKCVQESLEGCRNEFEEKENELISVEKLIDKCSEELE 365
             + + L  V         E+EE E     ++   +   E  E
Sbjct: 955 EEEIEALGPVNLRAI---EEYEEVEERYEELKSQREDLEEAKE 994

Length = 1163

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 77.1 bits (190), Expect = 3e-14
 Identities = 109/488 (22%), Positives = 205/488 (42%), Gaps = 61/488 (12%)

Query: 8   KEELRLAESKKEILRRSYDLAHAQANSVLNFTVQWKDLEEHLDISMKSLEKQSNDADSKI 67
           KE ++ A++K E L             +L      ++L+E   +     E++  + + +I
Sbjct: 177 KEVIKEAKAKIEELEGQLSELLEDIEDLLEA--LEEELKELKKLEEIQEEQEEEELEQEI 234

Query: 68  RLLDQRAKEIESKESDLVLAERRIKECNFELACKEKQLELVRKRIGECECELQLKEGELN 127
             L++R  E+E ++  L   + R+ E         K  E   + +     EL+ K   L 
Sbjct: 235 EALEERLAELEEEKERLEELKARLLEIESLELEALKIREEELRELERLLEELEEKIERLE 294

Query: 128 LVKKSVEEWLEKLDLKMKEVGLVEKSNDKSLVDQRRLENLIKDFCEQIELKEKDLRKIRS 187
            +++ +EE  E+L+                L +   L   +K   E++E  E+ L K+ S
Sbjct: 295 ELEREIEELEEELEGLRAL-----------LEELEELLEKLKSLEERLEKLEEKLEKLES 343

Query: 188 SIEECEKELVMKEKHASSLQSLIEDYAEELESKEKLYDEIKKSIIQCETKLDCKKKELEL 247
            +EE  +E     K       L+E+  +ELE + +  ++  +  ++   +L         
Sbjct: 344 ELEELAEEKNELAK-------LLEERLKELEERLEELEKELEKALERLKQL--------- 387

Query: 248 TQTSIIELSLELHLEEEKLESLQRIVRLRENELDSKEEKLDAMKEEMKKYFNDIELKERE 307
            + +I EL  EL      LE +Q  +   E EL+  E +L+ ++EE+KK    I   E +
Sbjct: 388 -EEAIQELKEELAELSAALEEIQEELEELEKELEELERELEELEEEIKKLEEQINQLESK 446

Query: 308 FNGI----------------------RKCIEKRSQELTLKEKQLKCVQESLEGCRNEFEE 345
              I                      ++ +E    EL   E++L   +E     R E EE
Sbjct: 447 ELMIAELAGAGEKCPVCGQELPEEHEKELLELYELELEELEEELSREKE-EAELREEIEE 505

Query: 346 KENELISVEKLIDKCSEELELKKKHLCVIENSAAELSDECESNELELDLIQTMAIGYLKQ 405
            E EL  +E+ + +  E  E  K+ L         L +E E  + +L L Q      L+Q
Sbjct: 506 LEKELRELEEELIELLELEEALKEELEEKLEKLENLLEELEELKEKLQLQQ--LKEELRQ 563

Query: 406 LKEKEKQFHSLKEAL-DERWQDLEIKE-----RKFEERVKEFELREKEIESIRKAVEDRS 459
           L+++ ++   L E L   R +  E++E     ++ ++++KE E R  ++E + +++E   
Sbjct: 564 LEDRLQELKELLEELRLLRTRKEELEELRERLKELKKKLKELEERLSQLEELLQSLELSE 623

Query: 460 KNLELKEK 467
              EL+E 
Sbjct: 624 AENELEEA 631

Length = 908

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 75.6 bits (186), Expect = 9e-14
 Identities = 106/472 (22%), Positives = 221/472 (46%), Gaps = 48/472 (10%)

Query: 42  WKDLEEHLDISMKSLEKQSNDADSKIRLLDQRAKEIESKESDLVLAERRIKECNFELACK 101
            ++ +E L+     L +  +     +++ ++  +E+E    +L     R++E   E+   
Sbjct: 244 LEEEKERLEELKARLLEIESLELEALKIREEELRELERLLEELEEKIERLEELEREIEEL 303

Query: 102 EKQLELVRKRIGECECELQLKEGELNLVKKSVEEWLEKLDLKMKEVGLVEKSNDKSLVDQ 161
           E++LE +R  + E E  L+  +     ++K  E+ LEKL+ +++E  L E+ N+ + + +
Sbjct: 304 EEELEGLRALLEELEELLEKLKSLEERLEKLEEK-LEKLESELEE--LAEEKNELAKLLE 360

Query: 162 RR---LENLIKDFCEQIELKEKDLRKIRSSIEECEKELVMKEKHASSLQSLIEDYAEELE 218
            R   LE  +++  +++E   + L+++  +I+E ++EL       + L + +E+  EELE
Sbjct: 361 ERLKELEERLEELEKELEKALERLKQLEEAIQELKEEL-------AELSAALEEIQEELE 413

Query: 219 SKEKLYDEIKKSIIQCET---KLDCKKKELELTQTSIIELSLELHLE-----EEKLESLQ 270
             EK  +E+++ + + E    KL+ +  +LE  +  I EL+           E   E  +
Sbjct: 414 ELEKELEELERELEELEEEIKKLEEQINQLESKELMIAELAGAGEKCPVCGQELPEEHEK 473

Query: 271 RIVRLRENELDSKEEKLDA------MKEEMKKYFNDIELKEREFNGIRKCIEKRSQELTL 324
            ++ L E EL+  EE+L        ++EE+++   ++   E E   + +  E   +EL  
Sbjct: 474 ELLELYELELEELEEELSREKEEAELREEIEELEKELRELEEELIELLELEEALKEELEE 533

Query: 325 KEKQL------------KCVQESLEGCRNEFEEKENELISVEK---LIDKCSEELELKKK 369
           K ++L            K   + L+    + E++  EL  + +   L+    EELE  ++
Sbjct: 534 KLEKLENLLEELEELKEKLQLQQLKEELRQLEDRLQELKELLEELRLLRTRKEELEELRE 593

Query: 370 HLCVIENSAAELSDECESNELELDLIQTMAIGYLKQLKEKEKQFHSLKEALDERWQDLEI 429
            L  ++    EL +    ++LE  L          +L+E E++  S  E L+ +      
Sbjct: 594 RLKELKKKLKELEER--LSQLEELLQSLELSEAENELEEAEEELESELEKLNLQ----AE 647

Query: 430 KERKFEERVKEFELREKEIESIRKAVEDRSKNLELKEKKLSNNLHLQVKIEQ 481
            E   +  ++E E + +E+E+  +    R +N E  E+KL     L+ ++EQ
Sbjct: 648 LEELLQAALEELEEKVEELEAEIRRELQRIENEEQLEEKLEELEQLEEELEQ 699

Length = 908

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 73.6 bits (181), Expect = 5e-13
 Identities = 82/361 (22%), Positives = 167/361 (46%), Gaps = 46/361 (12%)

Query: 11  LRLAESKKEILRRSYDLAHAQANSVLNFTVQWKDLEEHLDISMKSLEKQSNDADSKIRL- 69
            +  E +KE  R+   L   + N       + +D+   L+  +KSLE+Q+  A+    L 
Sbjct: 168 SKYKERRKETERK---LERTREN-----LDRLEDILNELERQLKSLERQAEKAERYKELK 219

Query: 70  --------------LDQRAKEIESKESDLVLAERRIKECNFELACKEKQLELVRKRIGEC 115
                         L++  +E+E  + +L  AE  ++E   EL   E++LE +R  + E 
Sbjct: 220 AELRELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSEL 279

Query: 116 ECELQLKEGELNLVKKSVEEWLEKLDLKMKEVGLVEKSNDKSLVDQRRLENLIKDFCEQI 175
           E E++  + EL  +   +   LE    + K++             + RL NL +    Q+
Sbjct: 280 EEEIEELQKELYALANEISR-LE----QQKQIL------------RERLANLER----QL 318

Query: 176 ELKEKDLRKIRSSIEECEKELVMKEKHASSLQSLIEDYAEELESKEKLYDEIKKSIIQCE 235
           E  E  L ++ S ++E  +EL   E+    L+  +E    ELE  E   +E++  + + E
Sbjct: 319 EELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELE 378

Query: 236 TKLDCKKKELELTQTSIIELSLELHLEEEKLESLQRIVRLRENELDSKEEKLDAMKEEMK 295
            +L+  + ++   +  I  L+ E+   E +LE L+      + E++   +KL+  + E+K
Sbjct: 379 EQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLE--EAELK 436

Query: 296 KYFNDIELKEREFNGIRKCIEKRSQELTLKEKQLKCVQESLEGCRNEFEEKENELISVEK 355
           +   ++E  E E   +++ +E+  + L    ++L+  +++L+    E  + +  L S+E+
Sbjct: 437 ELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLER 496

Query: 356 L 356
           L
Sbjct: 497 L 497

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 72.4 bits (178), Expect = 1e-12
 Identities = 84/371 (22%), Positives = 153/371 (41%), Gaps = 31/371 (8%)

Query: 104 QLELVRKRIGECECELQLKEGELNLVKKSVEEWLEKLDLKMK--EVGLVEKSNDKSLVDQ 161
           +LE V + I   +  +  K  +L  +++  E+      L  +  E    E   +K     
Sbjct: 178 ELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREYEGYELLKEK----- 232

Query: 162 RRLENLIKDFCEQIELKEKDLRKIRSSIEECEKELVMKEKHASSLQSLIEDYAEE--LES 219
             LE   +    Q+   E++L K+   I E EK L   E+    L   I+D  EE  L  
Sbjct: 233 EALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRV 292

Query: 220 KEKLYDEIKKSIIQCETKLDCKKKELELTQTSIIELSLELHLEEEKLESLQRIVRLRENE 279
           KEK+  E++  I   E  +  K++ELE  +  + +L  E+     ++E L+R +      
Sbjct: 293 KEKI-GELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKR 351

Query: 280 LDSKEEKLDAMKEEMKKYFNDIELKEREFNGIRKCIEKRSQELTLKEKQLKCVQESLEGC 339
            D   E+   +KEE++    ++E  ++EF   R               +LK  +E LE  
Sbjct: 352 RDKLTEEYAELKEELEDLRAELEEVDKEFAETRD--------------ELKDYREKLEKL 397

Query: 340 RNEFEEKENELISVEKLIDKCSEELELKKKHLCVIENSAAELSDECESNELELDLIQTMA 399
           + E  E + EL  +++ + + SEEL      +  IE    EL +E E   LE+   +   
Sbjct: 398 KREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKL 457

Query: 400 IGYLKQLKEKEKQFHSLKEALDERWQDLEIKERKFEERVKEFELREKEIESIRKAVEDRS 459
                 L + E++ + LKE       + +  E++  +  +E    E +  +  + V    
Sbjct: 458 EQLAADLSKYEQELYDLKE-------EYDRVEKELSKLQRELAEAEAQARASEERVRGGR 510

Query: 460 KNLELKEKKLS 470
              E+ +  + 
Sbjct: 511 AVEEVLKASIQ 521

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 71.3 bits (175), Expect = 2e-12
 Identities = 67/376 (17%), Positives = 174/376 (46%), Gaps = 43/376 (11%)

Query: 104  QLELVRKRIGECECELQLKEGELNLVKKSVEEWLEKLDLKMKEVGLVEKSNDKSLVDQRR 163
            +L+ +R+R+   + EL   + EL  ++  ++E  ++L    +++G +EK  ++   ++ +
Sbjct: 675  ELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEK 734

Query: 164  LENLIKDFCEQIELKEKDLRKIRSSIEECEKELVMKEKHASSLQSLIED-YAEELESK-- 220
            L+  +++  E +   E+++  ++S ++E E  +   E+    L+  + D  A    S+  
Sbjct: 735  LKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRIP 794

Query: 221  --EKLYDEIKKSIIQCETKLDCKKKELELTQTSIIELSLELHLEEEKLESLQRIVRLREN 278
              +    ++++ + + E +L   +++L         L+LE    E++++ LQ      + 
Sbjct: 795  EIQAELSKLEEEVSRIEARLREIEQKLN-------RLTLEKEYLEKEIQELQEQRIDLKE 847

Query: 279  ELDSKEEKLDAMKEEMKKYFNDIELKEREFNGIRKCIEKRSQELTLKEKQLKCVQESLEG 338
            ++ S E++++ +  +                      E+  +EL   E  L+ ++  L  
Sbjct: 848  QIKSIEKEIENLNGK---------------------KEELEEELEELEAALRDLESRLGD 886

Query: 339  CRNEFEEKENELISVEKLIDKCSEELELKKKHLCVIENSAAELSDECESNELELDLIQ-- 396
             + E +E E +L  +E+ I++   ++E K+K L  ++     L +E    E      +  
Sbjct: 887  LKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEI 946

Query: 397  ---TMAIGYLK-QLKEKEKQFHSLKEALDERWQDLEIKERKFEERVKEFELREKEIESIR 452
                +++  ++ +L+  E++  +L+       Q+ E   ++ +E  ++    E+E    R
Sbjct: 947  PEEELSLEDVQAELQRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEKRAKLEEE----R 1002

Query: 453  KAVEDRSKNLELKEKK 468
            KA+ +R +  E K+++
Sbjct: 1003 KAILERIEEYEKKKRE 1018

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 70.9 bits (174), Expect = 3e-12
 Identities = 72/348 (20%), Positives = 146/348 (41%), Gaps = 22/348 (6%)

Query: 88   ERRIKECNFELACKEKQLELVRKRIGECECELQLKEGELNLVKKSVEEWLEKLDLKMKEV 147
             R I+E   ++   E+++  + K + E   EL+  E EL  ++K +EE   ++    K++
Sbjct: 676  RREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDL 735

Query: 148  GLVEKSNDKSLVDQRRLENLIKDFCEQIELKEKDLRKIRSSIEECEKELVMKEKHASSLQ 207
              +E   ++      +L   + +   +IE  E+ L +    + E E E+   E     L+
Sbjct: 736  ARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLK 795

Query: 208  SLIEDYAEELESKEKLYDEIKKSIIQCETKLDCKKKELELTQTSIIELSLELHLEEEKLE 267
              ++   E L+        + +       +L+  ++ +  T+  + +L  ++    E +E
Sbjct: 796  EELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIE 855

Query: 268  SLQRIVRLRENELDSKEEKLDAMKEEMKKYFNDIELKEREFNGIRKCIEKRSQELTLKEK 327
            SL         E++  EE ++ ++ E++   N+    E     +R  +E+ S+EL   E 
Sbjct: 856  SLAA-------EIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELES 908

Query: 328  QLKCVQESLEGCRNEFEEKENELISVE----KLIDKCSEE----LELKKKHLCVIENSAA 379
            +   ++  LE  R +  + E  L  +E     L ++ SEE    LE  +     IE+   
Sbjct: 909  KRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEE 968

Query: 380  ELSDECESNELELDLIQT---MAIGYLKQLKEK----EKQFHSLKEAL 420
            E     +  E ++  +      AI   ++LKE+      Q   L EA 
Sbjct: 969  EARRRLKRLENKIKELGPVNLAAIEEYEELKERYDFLTAQKEDLTEAK 1016

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 70.5 bits (173), Expect = 4e-12
 Identities = 109/454 (24%), Positives = 207/454 (45%), Gaps = 32/454 (7%)

Query: 43  KDLEEHLDISMKSLEKQSNDADSKIRLLDQRAKEIESKESDLVLAERRIKECNFELACKE 102
           K+  E L+  ++SLE      + KIR L++R +E++ +  +L    + +KE   E A + 
Sbjct: 237 KEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELK-EKAEEY 295

Query: 103 KQLELVRKRIGECECELQLKEGELNLVKKSVEEWLEKLDLKMKEVGLVEKSNDKSLVDQR 162
            +L    +   +   E++ +   L      +EE +++L+ K + +  ++K   +      
Sbjct: 296 IKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLE 355

Query: 163 RLENLIKDFCEQIELKEKDLRKIRS-----SIEECEKELVMKEKHASSLQSLIEDYAEEL 217
            LE   + + E+ + K+++L +++      + E+ EKEL   EK    ++  I      +
Sbjct: 356 ELEERHELY-EEAKAKKEELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARI 414

Query: 218 ESKEKLYDEIKKSIIQCE-TKLDCKKKELELTQTSIIELSLELHLEEEKLESLQRIVRLR 276
              +K   E+KK+I + +  K  C     ELT+    EL  E   E +++E         
Sbjct: 415 GELKKEIKELKKAIEELKKAKGKCPVCGRELTEEHRKELLEEYTAELKRIEK-------E 467

Query: 277 ENELDSKEEKLDAMKEEMKKYFNDIELKEREFNGIRKCIEKRSQELTLKEKQLKCVQESL 336
             E++ KE KL     E++K       KE E   +++  E   Q   L+EK  K   E L
Sbjct: 468 LKEIEEKERKLRKELRELEKVLK----KESELIKLKELAE---QLKELEEKLKKYNLEEL 520

Query: 337 EGCRNEFEEKENELISVEKLIDKCSEELELK---KKHLCVIENSAAELSDECESNELELD 393
           E    E+E+ + +LI ++  I    +ELE     KK L  +E    EL +E      EL+
Sbjct: 521 EKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELE 580

Query: 394 LIQTMAI----GYLKQLKEKEKQFHSLKEA---LDERWQDLEIKERKFEERVKEFELREK 446
            +   ++      LK+L+    ++  LK+A   L+   ++L+  E + ++  +E    EK
Sbjct: 581 ELGFESVEELEERLKELEPFYNEYLELKDAEKELEREEKELKKLEEELDKAFEELAETEK 640

Query: 447 EIESIRKAVEDRSKNLELKEKKLSNNLHLQVKIE 480
            +E +RK +E+  K    +E +     +L++  E
Sbjct: 641 RLEELRKELEELEKKYSEEEYEELREEYLELSRE 674

Length = 880

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 70.5 bits (173), Expect = 4e-12
 Identities = 56/268 (20%), Positives = 123/268 (45%), Gaps = 3/268 (1%)

Query: 156 KSLVDQR-RLENLIKDFCEQIELKEKDLRKIRSSIEECEKELVMKEKHASSLQSLIEDYA 214
           + L ++   L+  +K+  E++E    +L+++   +EE   E+   E+    LQ  +   A
Sbjct: 235 EELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALA 294

Query: 215 EELESKEKLYDEIKKSIIQCETKLDCKKKELELTQTSIIELSLELHLEEEKLESLQRIVR 274
            E+   E+    +++ +   E +L+  + +LE  ++ + EL+ EL   EEKLE L+  + 
Sbjct: 295 NEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELE 354

Query: 275 LRENELDSKEEKLDAMKEEMKKYFNDIELKEREFNGIRKCIEKRSQELTLKEKQLKCVQE 334
             E EL+  E +L+ ++  +++    +E    +   +   I   + E+   E +L+ +++
Sbjct: 355 SLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLED 414

Query: 335 SLEGCRNEFEEKENELISVEKLIDKCSEELELKKKHLCVIENSAAELSDECESNELELDL 394
             E  + E EE   +L   E    +   ELE  ++ L  ++     L +  E    EL+ 
Sbjct: 415 RRERLQQEIEELLKKLEEAEL--KELQAELEELEEELEELQEELERLEEALEELREELEE 472

Query: 395 IQTMAIGYLKQLKEKEKQFHSLKEALDE 422
            +       ++L + + +  SL+   + 
Sbjct: 473 AEQALDAAERELAQLQARLDSLERLQEN 500

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 70.1 bits (172), Expect = 4e-12
 Identities = 56/277 (20%), Positives = 124/277 (44%), Gaps = 7/277 (2%)

Query: 214 AEELESKEKLYDEIKKSIIQCETKLDCKKKELELTQTSIIELSLELHLEEEKLESLQRIV 273
            E LE  ++    ++  + + E +LD   +EL      I E+  E+   E++ E L+  +
Sbjct: 680 RERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERL 739

Query: 274 RLRENELDSKEEKLDAMKEEMKKYFNDIELKEREFNGIRKCIEKRSQELTLKEKQLKCVQ 333
              E +L S E++++ +K E+K+    IE  E + + + + +      L+    ++  +Q
Sbjct: 740 EELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLS--HSRIPEIQ 797

Query: 334 ESLEGCRNEFEEKENELISVEKLIDKCSEELELKKKHLCVIENSAAELSDECESNELELD 393
             L     E    E  L  +E+ +++ + E E  +K +  ++    +L ++ +S E E++
Sbjct: 798 AELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIE 857

Query: 394 LIQTMAIGYLKQLKEKEKQFHSLKEALDERWQDLEIKERKFEERVKEFELREKEIESIRK 453
            +        ++L+E E         L+ R  DL+ +  + E +++E E + +E+E+  +
Sbjct: 858 NLNGKKEELEEELEELEAAL----RDLESRLGDLKKERDELEAQLRELERKIEELEAQIE 913

Query: 454 AVEDRSKNLELK-EKKLSNNLHLQVKIEQPESLKGNE 489
               R   L+ K E        ++    + E +   E
Sbjct: 914 KKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEE 950

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 70.1 bits (172), Expect = 5e-12
 Identities = 74/361 (20%), Positives = 156/361 (43%), Gaps = 34/361 (9%)

Query: 112 IGECECELQLKEGELNLVKKSVEEWLEKLDLKMKEVGLVEKSNDKSLVDQRRLENLIKDF 171
           + E + + +    EL  V++++E     +D K +++  + +  +K+   Q  L+   +  
Sbjct: 165 VAEFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKRE-- 222

Query: 172 CEQIELKE--KDLRKIRSSIEECEKELVMKEKHASSLQSLIEDYAEELESKEKLYDEIKK 229
               E  E  K+   +    E  E++L   E+    L   I +  + LE  E+L +E+ K
Sbjct: 223 ---YEGYELLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNK 279

Query: 230 SIIQCETKLDCKKKELELTQTSIIELSLELHLEEEKLESLQRIVRLRENELDSKEEKLDA 289
            I              +L +   + +  ++   E ++ SL+R +  +E EL+  EE+L  
Sbjct: 280 KI-------------KDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAK 326

Query: 290 MKEEMKKYFNDIELKEREFNGIRKCIEKRSQELTLKEKQLKCVQESLEGCRNEFEEKENE 349
           ++ E+ K   +IE  ERE    RK  +K ++E    +++L+ ++  LE    EF E  +E
Sbjct: 327 LEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDE 386

Query: 350 LISVEKLIDKCSEELELKKKHLCVIENSAAELSDECESNELELDLIQTMAIGYLKQLKEK 409
           L    + ++K   E+   K+ L  ++     LS+E       +             ++ K
Sbjct: 387 LKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAI-----------AGIEAK 435

Query: 410 EKQFHSLKEALDERWQDLEIKERKFEERVKEFELREKEIESIRKAVEDRSKNLELKEKKL 469
             +    KE        ++ +E K E+   +    E+E+  +++  +   K L   +++L
Sbjct: 436 INELEEEKEDKALE---IKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQREL 492

Query: 470 S 470
           +
Sbjct: 493 A 493

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 69.7 bits (171), Expect = 6e-12
 Identities = 109/466 (23%), Positives = 209/466 (44%), Gaps = 53/466 (11%)

Query: 46  EEHLDISMKSLEKQSNDADSKIRLLDQRAKEIESKESDLVLAERRIKECNFELACKEKQL 105
            E+++  +K  EK+  +   +I  +     E+  +   L    + ++E   E+   EK+L
Sbjct: 188 TENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELEKEL 247

Query: 106 ELVRKRIGECECELQLKEGELNLVKKSVEEWLEKLDLKMKEVGLVEKSNDKSLVDQRRLE 165
           E +     + E +++  E  +  +KK +EE    L+ K+KE+  +++  ++      +L 
Sbjct: 248 ESLEGSKRKLEEKIRELEERIEELKKEIEE----LEEKVKELKELKEKAEE----YIKLS 299

Query: 166 NLIKDFCEQIELKEKDLRKIRSSIEECEKELVMKEKHASSLQSL------IEDYAEELES 219
              +++ +++   EK L ++   I   E+ +   E+    L+ L      +E   EELE 
Sbjct: 300 EFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEE 359

Query: 220 KEKLYDEIKKSIIQCETKLDCKKKELELTQTSIIELSLELHLEEEKLESLQRIVRLRENE 279
           + +LY+E K    + E     KK+   LT   + +   EL   +E++E     +  R  E
Sbjct: 360 RHELYEEAKAKKEELE---RLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGE 416

Query: 280 LDSKEEKLDAMKEEMKKYFNDIELKEREFNGIRK--CIEKRSQELTLKEKQLKCVQESLE 337
           L  + ++L    EE+KK      +  RE     +   +E+ + EL   EK+LK ++E   
Sbjct: 417 LKKEIKELKKAIEELKKAKGKCPVCGRELTEEHRKELLEEYTAELKRIEKELKEIEEKER 476

Query: 338 GCRNEFEE------KENELISVEKLIDKCS-----------EELELKKKHLCVIENSAAE 380
             R E  E      KE+ELI +++L ++             EELE K +    ++    +
Sbjct: 477 KLRKELRELEKVLKKESELIKLKELAEQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIK 536

Query: 381 LSDECESNELELDLIQTM---AIGYLKQLKEKEKQFHSLK-----------EALDERWQD 426
           L  E +S + EL+ ++ +        K+L E E++   L            E L+ER ++
Sbjct: 537 LKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEELGFESVEELEERLKE 596

Query: 427 LEIKERKFEE---RVKEFELREKEIESIRKAVEDRSKNLELKEKKL 469
           LE    ++ E     KE E  EKE++ + + ++   + L   EK+L
Sbjct: 597 LEPFYNEYLELKDAEKELEREEKELKKLEEELDKAFEELAETEKRL 642

Length = 880

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 69.7 bits (171), Expect = 7e-12
 Identities = 69/276 (25%), Positives = 142/276 (51%), Gaps = 5/276 (1%)

Query: 213 YAEELESKEKLYDEIKKSIIQCETKLDCKKKELELTQTSIIELSLELHLEEEKLESLQRI 272
               LE   +  +E+++ + + E +L+    EL+  +  + EL LE+   EE++E LQ+ 
Sbjct: 230 LVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKE 289

Query: 273 VRLRENELDSKEEKLDAMKEEMKKYFNDIELKEREFNGIRKCIEKRSQELTLKEKQLKCV 332
           +    NE+   E++   ++E +      +E  E +   +   +++ ++EL   E++L+ +
Sbjct: 290 LYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEEL 349

Query: 333 QESLEGCRNEFEEKENELISVEKLIDKCSEELELKKKHLCVIENSAAELSDECESNELEL 392
           +E LE    E EE E EL  +E  +++  E+LE  +  +  +E   A L++E E  E  L
Sbjct: 350 KEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARL 409

Query: 393 DLIQTMAIGYLKQLKEKEKQFHSLKEALDERWQDLEIKERKFEERVKEFELREKEIESIR 452
           + ++       ++++E  K+    +  L E   +LE  E + EE  +E E  E+ +E +R
Sbjct: 410 ERLEDRRERLQQEIEELLKKLEEAE--LKELQAELEELEEELEELQEELERLEEALEELR 467

Query: 453 KAVEDRSKNLELKEKKLSNNLHLQVKIEQPESLKGN 488
           + +E+  + L+  E++L+    LQ +++  E L+ N
Sbjct: 468 EELEEAEQALDAAERELA---QLQARLDSLERLQEN 500

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 68.2 bits (167), Expect = 2e-11
 Identities = 108/466 (23%), Positives = 203/466 (43%), Gaps = 88/466 (18%)

Query: 56  LEKQSNDADSKIRLLDQRAKEIESKESDLVLAERRIKECNFELA-------------CKE 102
           +EK+ +  + +I  +++R KE+E KE  L   ++++KE    L               K+
Sbjct: 312 IEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKK 371

Query: 103 KQLELVRKRIGECECE-LQLKEGELNLVKKSVEEWLEKLDLKMKEVGLVEKSNDKSL--- 158
           ++LE ++KR+     E L+ +  EL   K+ +EE + K+  ++ E+    K   K++   
Sbjct: 372 EELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEEL 431

Query: 159 -------------VDQRRLENLIKDFCEQIELKEKDLRKIRSSIEECEKELVMKEKHASS 205
                        + +   + L++++  +++  EK+L++I     +  KEL   EK    
Sbjct: 432 KKAKGKCPVCGRELTEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKK 491

Query: 206 LQSLIEDY-----------------AEELESKEKLYDEIKKSIIQCETKLDCKKKELELT 248
              LI+                    EELE K + Y+++K+ +I+ + ++   KKEL   
Sbjct: 492 ESELIKLKELAEQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKEL--- 548

Query: 249 QTSIIELSLELHLEEEKLESLQRIVRLRENELDSKEEKLDAMKEEMKKY-FNDIELKERE 307
                          EKLE L++ +   E +LD  EE+L  + +E+++  F  +E  E  
Sbjct: 549 ---------------EKLEELKKKLAELEKKLDELEEELAELLKELEELGFESVEELEER 593

Query: 308 FNGIRKCIEKRSQELTLKEKQLKCVQESLEGCRNEFEEKENELISVEKLIDKCSEELELK 367
              +         EL   EK+L+  ++ L+    E ++   EL   EK +++  +ELE  
Sbjct: 594 LKELEP-FYNEYLELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEEL 652

Query: 368 KKHLCVIENSAAELSDECESNELELDLIQTMAIGYLKQLKEKEKQFHSLKEALDERWQDL 427
           +K     E    EL +E                   ++L     +   L++  +E  + L
Sbjct: 653 EKKYS--EEEYEELREEYLELS--------------RELAGLRAELEELEKRREEIKKTL 696

Query: 428 EIKERKFEERVKEFELREKEIESIRKAVEDRSKNLELKEKKLSNNL 473
           E    K +E ++E E  +KE+E + KA+E R + L  K KK    L
Sbjct: 697 E----KLKEELEEREKAKKELEKLEKALE-RVEELREKVKKYKALL 737

Length = 880

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 68.2 bits (167), Expect = 2e-11
 Identities = 70/344 (20%), Positives = 139/344 (40%), Gaps = 27/344 (7%)

Query: 68  RLLDQRAKEIESKESDLVLAERRIKECNFELACKEKQLELVRKRIGECECELQLKEGELN 127
           RL  +R K    +       E    E   E    E+Q E + +++   E EL+    E++
Sbjct: 202 RLRREREKAERYQALLKEKREYEGYELLKEKEALERQKEAIERQLASLEEELEKLTEEIS 261

Query: 128 LVKKSVEEWLEKLDLKMKEVGLVEKSNDKSLVDQRRLENLIKDFCEQIELKEKDLRKIRS 187
            ++K +EE  + L+       L +K  D    +Q R++       E+I   E ++  +  
Sbjct: 262 ELEKRLEEIEQLLE------ELNKKIKDLGEEEQLRVK-------EKIGELEAEIASLER 308

Query: 188 SIEECEKELVMKEKHASSLQSLIEDYAEELESKEKLYDEIKKSIIQCETKLDCKKKELEL 247
           SI E E+EL              ED  E L   E   D++   I + E +++ ++K  + 
Sbjct: 309 SIAEKEREL--------------EDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDK 354

Query: 248 TQTSIIELSLELHLEEEKLESLQRIVRLRENELDSKEEKLDAMKEEMKKYFNDIELKERE 307
                 EL  EL     +LE + +      +EL    EKL+ +K E+ +   +++  + E
Sbjct: 355 LTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEE 414

Query: 308 FNGIRKCIEKRSQELTLKEKQLKCVQESLEGCRNEFEEKENELISVEKLIDKCSEELELK 367
              + + +   +  +   E ++  ++E  E    E +++E +L  +   + K  +EL   
Sbjct: 415 LQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDL 474

Query: 368 KKHLCVIENSAAELSDECESNELELDLIQTMAIGYLKQLKEKEK 411
           K+    +E   ++L  E    E +    +    G     +  + 
Sbjct: 475 KEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKA 518

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 67.5 bits (165), Expect = 3e-11
 Identities = 105/501 (20%), Positives = 223/501 (44%), Gaps = 42/501 (8%)

Query: 8   KEELRLAESKKEILRRSYDLAHAQANSVLNFTVQWKDLEEHLDISMKSLEKQSNDADSKI 67
           +EELR  E   E L    +        +     + + L   L+  ++ L ++    + ++
Sbjct: 273 EEELRELERLLEELEEKIERLEELEREIEELEEELEGLRALLE-ELEELLEKLKSLEERL 331

Query: 68  RLLDQRAKEIESKESDLVLAERRIKECNFELACKEKQLELVRKRIGECECELQLKEGELN 127
             L+++ +++ES+  +L   +  +          E++L+ + +R+ E E EL+     L 
Sbjct: 332 EKLEEKLEKLESELEELAEEKNELA------KLLEERLKELEERLEELEKELEKALERLK 385

Query: 128 LVKKSVEEWLEKLDLKMKEVGLVEKSNDKSLVDQRRLENLIKDFCEQIELKEKDLRKIRS 187
            ++++++E  E+L      +  +++  ++   +   LE  +++  E+I+  E+ + ++ S
Sbjct: 386 QLEEAIQELKEELAELSAALEEIQEELEELEKELEELERELEELEEEIKKLEEQINQLES 445

Query: 188 SIEE-------------CEKELVMKEKHASSLQSLIEDYAEELESKEKLYDEIKKSIIQC 234
                            C +EL   E+H   L  L E   EELE +    ++ +  + + 
Sbjct: 446 KELMIAELAGAGEKCPVCGQEL--PEEHEKELLELYELELEELEEELSR-EKEEAELREE 502

Query: 235 ETKLDCKKKELELTQTSIIELSLELHLE-EEKLESL-QRIVRLRENELDSKEEKLDAMKE 292
             +L+ + +ELE     ++EL   L  E EEKLE L   +  L E +   + ++L     
Sbjct: 503 IEELEKELRELEEELIELLELEEALKEELEEKLEKLENLLEELEELKEKLQLQQLKEELR 562

Query: 293 EMKKYFNDIELKEREFNGIRKC---IEKRSQELTLKEKQLKCVQESLEGCRNEFE----- 344
           +++    +++    E   +R     +E+  + L   +K+LK ++E L       +     
Sbjct: 563 QLEDRLQELKELLEELRLLRTRKEELEELRERLKELKKKLKELEERLSQLEELLQSLELS 622

Query: 345 EKENELISVEKLIDKCSEELELKKKHLCVIENSAAELSDECE------SNELELDLIQTM 398
           E ENEL   E+ ++   E+L L+ +   +++ +  EL ++ E        EL+    +  
Sbjct: 623 EAENELEEAEEELESELEKLNLQAELEELLQAALEELEEKVEELEAEIRRELQRIENEEQ 682

Query: 399 AIGYLKQLKEKEKQFHSLKEALDERWQDLEIKER---KFEERVKEFELREKEIESIRKAV 455
               L++L++ E++   L+E L+E  + L   E+   + E R  E E  +KE+E + KA+
Sbjct: 683 LEEKLEELEQLEEELEQLREELEELLKKLGEIEQLIEELESRKAELEELKKELEKLEKAL 742

Query: 456 EDRSKNLELKEKKLSNNLHLQ 476
           E   +  E   K       L+
Sbjct: 743 ELLEELREKLGKAGLRADILR 763

Length = 908

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 66.7 bits (163), Expect = 5e-11
 Identities = 75/322 (23%), Positives = 148/322 (45%), Gaps = 26/322 (8%)

Query: 168 IKDFCEQIELKEKDLRKIRSSIEECEKELVMKEKHASSLQSLIEDYAEELESKEKL---- 223
           +  + E+ E  E+ L +   ++E  E  L   EK    L+   E      E K +L    
Sbjct: 167 VSKYKERKEEAERKLERTEENLERLEDLLEELEKQLEKLERQAEKAERYQELKAELRELE 226

Query: 224 YDEIKKSIIQCETKLDCKKKELELTQTSIIELSLELHLEEEKLESLQRIVRLRENELDSK 283
              +   + +   +L+  ++EL   +  + EL  EL   E+++E L       ++EL+  
Sbjct: 227 LALLLAKLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEEL-------KSELEEL 279

Query: 284 EEKLDAMKEEMKKYFNDIELKEREFNGIRKCIEKRSQELTLKEKQLKCVQESLEGCRNEF 343
            E+L+ ++EE+ +   +IE  E E + +R+ +E+   EL   E++L+ ++E +E  + E 
Sbjct: 280 REELEELQEELLELKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEEL 339

Query: 344 EEKENELISVEKLIDKCSEE-----------LELKKKHLCVIENSAAELSDECESNELEL 392
           EE+E  L  +E+L+ +  E            LE  ++    +    AEL  E      EL
Sbjct: 340 EERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNEL 399

Query: 393 DLIQTMAIGYLKQLKEKEKQFHSLKEALDERWQDLEIKERKFEERVKEFELREKEIESIR 452
           + ++      ++ L+E+ ++     E L E  ++LE +  + +  ++E     +E+E   
Sbjct: 400 EELKRE----IESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQL 455

Query: 453 KAVEDRSKNLELKEKKLSNNLH 474
           + + DR K LE +  +L   L 
Sbjct: 456 EELRDRLKELERELAELQEELQ 477

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 66.3 bits (162), Expect = 8e-11
 Identities = 75/327 (22%), Positives = 150/327 (45%), Gaps = 18/327 (5%)

Query: 5   DNNKEELRL-AESKKEILRRSYDLAHAQANSVLNFTVQWKDLEEHLDISMKSLEKQSNDA 63
           +   E+L   AE  +       +L   +   +L    + K+L + L+   + L +   + 
Sbjct: 199 EKQLEKLERQAEKAERYQELKAELRELELALLL---AKLKELRKELEELEEELSRLEEEL 255

Query: 64  DSKIRLLDQRAKEIESKESDLVLAERRIKECNFELACKEKQLELVRKRIGECECELQLKE 123
           +     L++  KEIE  +S+L      ++E   EL   ++++E +   I      L+  E
Sbjct: 256 EELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEISLLRERLEELE 315

Query: 124 GELNLVKKSVEEWLEKLDLKMKEVGLVEKSNDKSLVDQRRLENLIKDFCEQIELKEKDLR 183
            EL  +++ +EE  EK++   +E+       ++       LE L+ +  E  E  E+ L 
Sbjct: 316 NELEELEERLEELKEKIEALKEEL-------EERETLLEELEQLLAELEEAKEELEEKLS 368

Query: 184 KIRSSIEE----CEKELVMKEKHASSLQSLIEDYAEELESKEKLYDEIKKSIIQCETKLD 239
            +   +EE      +EL   E   + +++ +E+   E+ES E+  + + + +   + +L 
Sbjct: 369 ALLEELEELFEALREELAELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELK 428

Query: 240 CKKKELELTQTSIIELSLELHLEEEKLESLQRIVRLRENELDSKEEKLDAMKEEMKKY-- 297
             + ELE  QT + EL+ EL   EE+LE L+  ++  E EL   +E+L  +++E+     
Sbjct: 429 ELEAELEELQTELEELNEELEELEEQLEELRDRLKELERELAELQEELQRLEKELSSLEA 488

Query: 298 -FNDIELKEREFNGIRKCIEKRSQELT 323
             + +E ++R   G+R  +E     L 
Sbjct: 489 RLDRLEAEQRASQGVRAVLEALESGLP 515

Length = 1163

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 63.5 bits (155), Expect = 5e-10
 Identities = 71/331 (21%), Positives = 149/331 (45%), Gaps = 33/331 (9%)

Query: 38  FTVQWKDLEEHLDISMKSLEKQSNDADSKIRLLDQRAKEIESKESDLVLAERRIKECNFE 97
           F+       + L   ++ L+++ +   S++R ++ R  E+  + SD   A R+I E   E
Sbjct: 668 FSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSD---ASRKIGEIEKE 724

Query: 98  LACKEKQLELVRKRIGECECELQLKEGELNLVKKSVEEWLEKLDLKMKEVGLVEKSNDKS 157
           +   E++ E +++R+ E E +L   E E+  VK  ++E   +++   +++  +E++    
Sbjct: 725 IEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEA---- 780

Query: 158 LVDQRRLENLIKDFCEQIELKEKDLRKIRSSIEECEKELVMKEKHASSLQSLIEDYAEEL 217
                 L +L      +  L    + +I++ + + E+E+   E     ++  +     E 
Sbjct: 781 ------LNDL------EARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEK 828

Query: 218 ESKEKLYDEIKKSIIQCETKLDCKKKELELTQTSIIELSLELHLEEEKLESLQRIVRLRE 277
           E  EK   E+++  I  + ++   +KE+E       EL       EE+LE L+       
Sbjct: 829 EYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEEL-------EEELEELE----AAL 877

Query: 278 NELDSKEEKLDAMKEEMKKYFNDIELKEREFNGIRKCIEKRSQELTLKEKQLKCVQESLE 337
            +L+S+   L   ++E++    ++E K  E     +   KR  EL  K + L+     +E
Sbjct: 878 RDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIE 937

Query: 338 GCRNEFEEKENELISVEKL---IDKCSEELE 365
             + E EE   E +S+E +   + +  EE+ 
Sbjct: 938 DPKGEDEEIPEEELSLEDVQAELQRVEEEIR 968

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 63.2 bits (154), Expect = 6e-10
 Identities = 79/364 (21%), Positives = 174/364 (47%), Gaps = 14/364 (3%)

Query: 8    KEELRLAESKKEILRRSYDLAHAQANSVLNFTVQWKDLEEHLDISMKSLEKQSNDADSKI 67
            K EL+  E +   L    +    +  S+ N     +DL E L   ++ LE+Q  +   ++
Sbjct: 666  KRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKREL 725

Query: 68   RLLDQRAKEIESKESDLV----LAERRIKECNFELACKEKQLELVRKRIGECECELQLKE 123
              L++  ++++S+  +L       E  ++E    L   E++LE + + + + + E++  E
Sbjct: 726  AALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELE 785

Query: 124  GELNLVKKSVEEWLEKLDLKMKEVGLVEKSNDKSLVDQRRLENLIKDFCEQIELKEKDLR 183
             +   +++ +EE  E+L+   + +  +E+  +     + RLE  I++  E+IE  E+ L 
Sbjct: 786  EKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLD 845

Query: 184  KIRSSIEECEKELVMKEKHASSLQSLIEDYAEELESKEKLYDEIKKSIIQCETKLDCKKK 243
            ++   +EE EKEL   ++    L++  E+  +EL+  E+  +E+++ + + E++L   K+
Sbjct: 846  ELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKE 905

Query: 244  ELELTQTSIIELSLELHLEEEKLESLQRIVRLRENELDSKEEKLDAMKEEMKKYFNDIEL 303
            E+E  +  +    LE  LE  ++E  +    L E   D+ E +L+   E +++     E+
Sbjct: 906  EIEKLRERL--EELEAKLERLEVELPELEEELEEEYEDTLETELEREIERLEE-----EI 958

Query: 304  KEREFNGIR--KCIEKRSQELTLKEKQLKCVQESLEGCRNEFEEKENELISV-EKLIDKC 360
            +      +R  +  E+  +     + Q + ++E+ E      EE + E     ++  DK 
Sbjct: 959  EALGPVNLRAIEEYEEVEERYEELKSQREDLEEAKEKLLEVIEELDKEKRERFKETFDKI 1018

Query: 361  SEEL 364
            +E  
Sbjct: 1019 NENF 1022

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 63.2 bits (154), Expect = 6e-10
 Identities = 67/304 (22%), Positives = 138/304 (45%), Gaps = 24/304 (7%)

Query: 200 EKHASSLQSLIEDYAEELESKEKLYDEIKKSIIQCETKLDCKKKELELTQTSIIELSLEL 259
           ++    L+  + +   +LE  E+    +K  +   E  L+  +++LE  +  + EL  EL
Sbjct: 666 KRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKREL 725

Query: 260 HLEEEKLESLQRIVRLRENELDSKEEKLDAMKEEMKKYFNDIELKEREFNGIRKCIEKRS 319
              EE+LE LQ  +   E EL+  EE+L+ ++E +++        E E   + + + K  
Sbjct: 726 AALEEELEQLQSRLEELEEELEELEEELEELQERLEE-------LEEELESLEEALAKLK 778

Query: 320 QELTLKEKQLKCVQESLEGCRNEFEEKENELISVEKLIDKCSEELELKKKHLCVIENSAA 379
           +E+   E++ + +QE LE    E EE E  L ++E+ ++   +  E  ++ +  +E    
Sbjct: 779 EEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIE 838

Query: 380 ELSDECESNELELDLIQTMAIGYLKQLKEKEKQFHSLKEALDERWQDLEIKERKFEERVK 439
           EL ++ +  E EL+ ++       ++L+E E +   L++ L E            EE  +
Sbjct: 839 ELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKE-----------LEEEKE 887

Query: 440 EFELREKEIESIRKAVEDRSKNLELKEKKLSNNLHLQVKIEQPESLKGNEGTKQLSLQSC 499
           E    E+E+  +   + +  + +E   ++L     L+ K+E+ E        +       
Sbjct: 888 E---LEEELRELESELAELKEEIEKLRERLE---ELEAKLERLEVELPELEEELEEEYED 941

Query: 500 TMIT 503
           T+ T
Sbjct: 942 TLET 945

Length = 1163

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 63.2 bits (154), Expect = 6e-10
 Identities = 103/419 (24%), Positives = 197/419 (47%), Gaps = 43/419 (10%)

Query: 96  FELACKEKQLELVRKRIGECECELQLKEGELNLVKKSVEEWLEKLDLKMKEVGLVEKSND 155
           F L   EK  EL+++ I E + +++  EG+L+ + + +E+ LE L+ ++KE+  +E+  +
Sbjct: 164 FGLEKYEKLSELLKEVIKEAKAKIEELEGQLSELLEDIEDLLEALEEELKELKKLEEIQE 223

Query: 156 KSLVDQRRLENLIKDFCEQIELKEKDLRKIRSSIEECEKELVMKEKHASSLQSLIEDYAE 215
           +   ++  LE  I    E +E +  +L + +  +EE +  L            +     E
Sbjct: 224 EQ--EEEELEQEI----EALEERLAELEEEKERLEELKARL----------LEIESLELE 267

Query: 216 ELESKEKLYDEIKKSIIQCETKLDCKKKELELTQTSIIELSLELHLEEEKLESLQRIVRL 275
            L+ +E+   E+++ + + E K+    + LE  +  I EL  EL      LE L+ +   
Sbjct: 268 ALKIREEELRELERLLEELEEKI----ERLEELEREIEELEEELEGLRALLEELEEL--- 320

Query: 276 RENELDSKEEKLDAMKEEMKKYFNDIELKEREFNGIRKCIEKRS----QELTLKEKQLKC 331
              +L S EE+L+ ++E+++K  +++E    E N + K +E+R     + L   EK+L+ 
Sbjct: 321 -LEKLKSLEERLEKLEEKLEKLESELEELAEEKNELAKLLEERLKELEERLEELEKELEK 379

Query: 332 VQESLEGCRNEFEEKENELISVEKLIDKCSEELELKKKHLCVIENSAAELSDECESNELE 391
             E L+      +E + EL  +   +++  EELE  +K L  +E    EL +E +  E +
Sbjct: 380 ALERLKQLEEAIQELKEELAELSAALEEIQEELEELEKELEELERELEELEEEIKKLEEQ 439

Query: 392 LDLIQTMAIGYLKQLKEKEK--------QFHSLKEALDERWQDLEIKERKFEERVKEFEL 443
           ++ +++  +   +     EK             KE L+    +LE  E +     +E EL
Sbjct: 440 INQLESKELMIAELAGAGEKCPVCGQELPEEHEKELLELYELELEELEEELSREKEEAEL 499

Query: 444 RE--KEIESIRKAVEDRSKNLELKEKKLSNNL-----HLQVKIEQPESLKGNEGTKQLS 495
           RE  +E+E   + +E+    L   E+ L   L      L+  +E+ E LK     +QL 
Sbjct: 500 REEIEELEKELRELEEELIELLELEEALKEELEEKLEKLENLLEELEELKEKLQLQQLK 558

Length = 908

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 62.8 bits (153), Expect = 8e-10
 Identities = 53/261 (20%), Positives = 118/261 (45%), Gaps = 14/261 (5%)

Query: 210 IEDYAEELESKEKLYDEIKKSIIQCETKLDCKKKELELTQTSIIELSLELHLEEEKLESL 269
           IE+  E++E  E+   E++K++ +   +L+  ++ELE  +  + ELS ++    + L  L
Sbjct: 679 IEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARL 738

Query: 270 QRIVRLRENELDSKEEKLDAMKEEMKKYFNDIELKEREFNGIRKCIEKRSQELTLKEKQL 329
           +  V   E  +    ++L  ++ E+++    +E  E E       IE+   ++   +++L
Sbjct: 739 EAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEEL 798

Query: 330 KCVQESLEGCRNEFEEKENELISVEKLIDKCSEELELKKKHLCVIENSAAELSDECESNE 389
           K ++E+L+  R E      E  ++ + ++     +   ++ L  +E    ELS++ ES  
Sbjct: 799 KALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLA 858

Query: 390 LELDLIQTMAIGYLKQLKEKEKQFHSLKEALDERWQDLEIKERKFEERVKEFELREKEIE 449
            E++ ++ +      +L+    +  SL+EAL                   E E   +E+ 
Sbjct: 859 AEIEELEELIEELESELEALLNERASLEEAL--------------ALLRSELEELSEELR 904

Query: 450 SIRKAVEDRSKNLELKEKKLS 470
            +     +  + LE   +KL+
Sbjct: 905 ELESKRSELRRELEELREKLA 925

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 62.1 bits (150), Expect = 2e-09
 Identities = 97/490 (19%), Positives = 208/490 (42%), Gaps = 18/490 (3%)

Query: 9    EELRLAESKK--EILRRSYDLAHA-QANSVLNFTVQWKDLEEHLDISMKSLEKQSNDADS 65
            +EL+ AE KK  +  +++ +   A +A        +  + ++  + + K  +     A+ 
Sbjct: 1281 DELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEE 1340

Query: 66   KIRLLDQRAKEIESKESDLVLAERRIKECNFELACKEKQLELVRKRIGECECELQLKEGE 125
              +  +    E E+   +   AE + +    +    +K+ +  +K+  E +   + K+ +
Sbjct: 1341 AKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKK-K 1399

Query: 126  LNLVKKSVEEWLEKLDLKMKEVGLVEKSNDKSLVDQRRLENLIKDFCEQIELKEKDLRKI 185
                KK  +E  +    K K     +K+ +K   D+ + +       ++ + K ++ +K 
Sbjct: 1400 AEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKA 1459

Query: 186  RSSIEECEKELVMKEKHASSLQSLIEDYAEELESKEKLYDEIKKSIIQCETKLDCKKKEL 245
              + ++ E+      K A   +   E+  +  E+K+K  +E KK   + +   + KKK  
Sbjct: 1460 EEAKKKAEEA-----KKADEAKKKAEEAKKADEAKKKA-EEAKKKADEAKKAAEAKKKAD 1513

Query: 246  ELTQTSIIELSLELHLEEE--KLESLQRIVRLRENELDSKEEKLDAMKEEMKKYFNDIEL 303
            E  +    + + E    EE  K +  ++    ++ +   K E+L    EE KK     + 
Sbjct: 1514 EAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKK-AEEKKKAEEAKKA 1572

Query: 304  KEREFNGIRKCIEKRSQELTLKEKQLKCVQESLEGCRNEFEEKENELISVEKLIDKCSEE 363
            +E +   +RK  E +  E    E+ +K  +E  +    E ++ E   I  E+L     ++
Sbjct: 1573 EEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEEL-----KK 1627

Query: 364  LELKKKHLCVIENSAAELSDECESNELELDLIQTMAIGYLKQLKEKEKQFHSLKEALDER 423
             E +KK +  ++   AE   + E  +   +  +  A    K+ +E +K+    K+A ++ 
Sbjct: 1628 AEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDE 1687

Query: 424  WQDLEIKERKFEERVKEFELREKEIESIRKAVEDRSKNLELKEKKLSNNLHLQVKIEQPE 483
             +  E  +++ EE  K  EL++KE E  +KA E +    E K K        +   ++ E
Sbjct: 1688 KKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAE 1747

Query: 484  SLKGNEGTKQ 493
              K +E  K+
Sbjct: 1748 EAKKDEEEKK 1757

Length = 2084

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 60.5 bits (147), Expect = 4e-09
 Identities = 52/236 (22%), Positives = 115/236 (48%), Gaps = 14/236 (5%)

Query: 246 ELTQTSIIELSLELHLEEEKLESLQRIVRLRENELDSKEEKLDAMKEEMKKYFNDIELKE 305
             T +SI+E   E+   EEK+E L+  +   E  L    ++L+ ++EE+++   ++E   
Sbjct: 666 AKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELS 725

Query: 306 REFNGIRKCIEKRSQELTLKEKQLKCVQESLEGCRNEFEEKENELISVEKLIDKCSEELE 365
           R+ + +RK + +   E+   E+++      L     E E +  EL   E+ +++  EEL 
Sbjct: 726 RQISALRKDLARLEAEVEQLEERI----AQLSKELTELEAEIEEL---EERLEEAEEELA 778

Query: 366 LKKKHLCVIENSAAELSDECESNELELDLIQTMAIGYLKQLKEKEKQFHSLKEALDERWQ 425
             +  +  +E    +L +E ++    LD ++        +L    ++  +L+E L+   +
Sbjct: 779 EAEAEIEELEAQIEQLKEELKALREALDELR-------AELTLLNEEAANLRERLESLER 831

Query: 426 DLEIKERKFEERVKEFELREKEIESIRKAVEDRSKNLELKEKKLSNNLHLQVKIEQ 481
            +   ER+ E+  ++ E   ++IES+   +E+  + +E  E +L   L+ +  +E+
Sbjct: 832 RIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEE 887

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 60.5 bits (147), Expect = 5e-09
 Identities = 63/346 (18%), Positives = 132/346 (38%), Gaps = 46/346 (13%)

Query: 8    KEELRLAESKKEILRRSYDLAHAQANSVLNFTVQWKDLEEHLDISMKSLEKQSNDADSKI 67
              EL+    + E L+R      ++   + N   +           +  +EK+    + + 
Sbjct: 673  PAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEE 732

Query: 68   RLLDQRAKEIESK----ESDLVLAERRIKECNFELACKEKQLELVRKRIGECECEL---- 119
              L +R +E+E      E ++   +  +KE    +   E+ L  + + + + E  L    
Sbjct: 733  EKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSR 792

Query: 120  -QLKEGELNLVKKSVEEW---LEKLDLKMKEVGLVEKSNDKS---LVDQRR-LENLIKDF 171
                + EL+ +++ V      L +++ K+  + L ++  +K    L +QR  L+  IK  
Sbjct: 793  IPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSI 852

Query: 172  CEQIELKEKDLRKIRSSIEECEKELVMKEKHASSLQSLIEDYAEELESKEKLYDEIKKSI 231
             ++IE       ++   +EE E  L   E     L+   ++   +L   E+  +E++  I
Sbjct: 853  EKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQI 912

Query: 232  IQCETKLDCKK----------KELELTQTSIIELSLEL----HLEEEKLESLQRIVRL-- 275
             +   +L   K           E+E  +    E+  E      ++ E     + I  L  
Sbjct: 913  EKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSLEDVQAELQRVEEEIRALEP 972

Query: 276  --------------RENELDSKEEKLDAMKEEMKKYFNDIELKERE 307
                          R +EL  K  KL+  ++ + +   + E K+RE
Sbjct: 973  VNMLAIQEYEEVLKRLDELKEKRAKLEEERKAILERIEEYEKKKRE 1018

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 59.7 bits (145), Expect = 8e-09
 Identities = 56/248 (22%), Positives = 116/248 (46%), Gaps = 14/248 (5%)

Query: 230 SIIQCETKLDCKKKELELTQTSIIELSLELHLEEEKLESLQRIVRLRENELDSKEEKLDA 289
           SI++   +++  ++++E  +  I EL   L    ++LE L+  +     EL+    ++ A
Sbjct: 671 SILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISA 730

Query: 290 MKEEMKKYFNDIELKEREFNGIRKCIEKRSQELTLKEKQLKCVQESLEGCRNEFEEKENE 349
           +++++ +   ++E  E         I + S+ELT  E +++ ++E LE    E  E E E
Sbjct: 731 LRKDLARLEAEVEQLEER-------IAQLSKELTELEAEIEELEERLEEAEEELAEAEAE 783

Query: 350 LISVEKLIDKCSEELELKKKHLCVIENSAAELSDE-------CESNELELDLIQTMAIGY 402
           +  +E  I++  EEL+  ++ L  +      L++E        ES E  +   +      
Sbjct: 784 IEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDL 843

Query: 403 LKQLKEKEKQFHSLKEALDERWQDLEIKERKFEERVKEFELREKEIESIRKAVEDRSKNL 462
            +Q++E  +   SL   ++E  + +E  E + E  + E    E+ +  +R  +E+ S+ L
Sbjct: 844 EEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEEL 903

Query: 463 ELKEKKLS 470
              E K S
Sbjct: 904 RELESKRS 911

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 59.3 bits (144), Expect = 1e-08
 Identities = 59/277 (21%), Positives = 110/277 (39%), Gaps = 27/277 (9%)

Query: 44  DLEEHLDISMKSLEKQSNDADSKIRLLDQRAKEIESKESDLVLAERRIKECNFELACKEK 103
            LEE     +  LE++  +   +   L   A EI   E    +   R+     +L   E 
Sbjct: 268 KLEELRLE-VSELEEEIEELQKE---LYALANEISRLEQQKQILRERLANLERQLEELEA 323

Query: 104 QLELVRKRIGECECELQLKEGELNLVKKSVEEWLEKLDLKMKEVGLVEKSNDKSLVDQRR 163
           QLE +  ++ E   EL   E +L  +K+ +E    +L+    E                 
Sbjct: 324 QLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAE--------------LEE 369

Query: 164 LENLIKDFCEQIELKEKDLRKIRSSIEECEKELVMKEKHASSLQSLIEDYAEELESKEKL 223
           LE+ +++  EQ+E     + ++   I     E+   E     L+   E   +E+E   K 
Sbjct: 370 LESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKK 429

Query: 224 YDEIKKSIIQCETKLDCKKKELELTQTSIIELSLELHLEEEKLESLQRIVRLRENELDSK 283
            +E +   +Q   +L+  ++ELE  Q  +  L   L    E+LE  ++ +   E EL   
Sbjct: 430 LEEAELKELQ--AELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQL 487

Query: 284 EEKLDAMKEEMKKYFNDIELKEREFNGIRKCIEKRSQ 320
           + +LD+++          E  E    G++  ++ +S 
Sbjct: 488 QARLDSLERLQ-------ENLEGFSEGVKALLKNQSG 517

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional

 Score = 57.0 bits (138), Expect = 5e-08
 Identities = 99/434 (22%), Positives = 184/434 (42%), Gaps = 56/434 (12%)

Query: 43  KDLEEHLDISMKSLEKQSNDADSKI-RLLDQRAKEIESKE-SDLVLAERRIKECNFELAC 100
           KDL E L+     LE +  + D +I R  +QR +  E+++ +D VL E    E   EL  
Sbjct: 202 KDLHERLN----GLESELAELDEEIERYEEQREQARETRDEADEVLEEHE--ERREELET 255

Query: 101 KEKQLELVRKRIGECECELQLKEGELNLVKKSVEEWLEKLDLKMKEVGLVEKSNDKSLVD 160
            E ++E +R+ I E E E +    E+  +++ +EE  E+ D  + E GL +         
Sbjct: 256 LEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDAD------- 308

Query: 161 QRRLENLIKDFCEQIELKEKDLRKIRSSIEECEKELVMKEKHASSLQSLIEDYAEELESK 220
                   +    + E  E    ++R  +EEC        + A SL+   +D  E  E  
Sbjct: 309 -------AEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEEL 361

Query: 221 EKLYDEIKKSIIQCETKLDCKKKELELTQTSIIELSLELHLEEEKLESLQRIVRLRENEL 280
            +   E++  + +    ++ +++E+E       EL       EE++E L+        +L
Sbjct: 362 REEAAELESELEEAREAVEDRREEIE-------EL-------EEEIEELRERFGDAPVDL 407

Query: 281 DSKEEKLDAMKEEMKKYFNDIELKEREFNGIRKCIEKRSQELTLKEKQLKCVQ------- 333
            + E+ L+ ++EE  +        E      R+ +E+ ++ L    K  +C Q       
Sbjct: 408 GNAEDFLEELREERDELREREAELEATLRTARERVEE-AEALLEAGKCPECGQPVEGSPH 466

Query: 334 -ESLEGCRNEFEEKENELISVEKLIDKCSEELELKKKHLCVIENSAAELSDECESNELEL 392
            E++E  R   EE E EL  +E+ +++  E LE  +           E  D  E  E   
Sbjct: 467 VETIEEDRERVEELEAELEDLEEEVEEVEERLERAE--------DLVEAEDRIERLEERR 518

Query: 393 DLIQTMAIGYLKQLKEKEKQFHSLKEALDERWQDLEIKE---RKFEERVKEFELREKEIE 449
           + ++ +     + ++EK ++   L+E   E   + E K     + EE  +E      E+ 
Sbjct: 519 EDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELN 578

Query: 450 SIRKAVEDRSKNLE 463
           S    +++R ++LE
Sbjct: 579 SKLAELKERIESLE 592

Length = 880

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 55.4 bits (134), Expect = 1e-07
 Identities = 63/318 (19%), Positives = 127/318 (39%), Gaps = 16/318 (5%)

Query: 6   NNKEELRLAESKKEILRRSYDLAHAQANSVLNFTVQWKDLEEHLDISMKSLEKQSNDADS 65
             + E+   E K E L             +     + ++  E L   ++ L +Q +    
Sbjct: 674 ERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRK 733

Query: 66  KIRLLDQRAKEIESKESDLVLAERRIKECNFELACKEKQLELVRKRIGECECELQLKEGE 125
            +  L+    E+E  E  +    + + E   E+   E++LE   + + E E E++  E +
Sbjct: 734 DLARLEA---EVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQ 790

Query: 126 LNLVKKSVEEWLEKLDLKMKEVGLVEKSNDKSLVDQRRLENLIKDFCEQIELKEKDLRKI 185
           +  +K+ ++   E LD    E+ L+ +           LE  I     ++E  E+ + ++
Sbjct: 791 IEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEEL 850

Query: 186 RSSIEECEKEL----VMKEKHASSLQSLIEDYA---EELESKEKLYDEIKKSIIQCETKL 238
              IE    E+     + E+  S L++L+ + A   E L       +E+ + + + E+K 
Sbjct: 851 SEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKR 910

Query: 239 DCKKKELELTQTSIIELSLELHLEEEKLESLQRIVRLRENELDSKEEKLDAMKEEMKKYF 298
              ++ELE  +  + +  LEL LE  ++       RL E    +    L+  +    K  
Sbjct: 911 SELRRELEELREKLAQ--LELRLEGLEVRIDNLQERLSEEYSLT----LEEAEALENKIE 964

Query: 299 NDIELKEREFNGIRKCIE 316
           +D E   R    +   I+
Sbjct: 965 DDEEEARRRLKRLENKIK 982

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain

 Score = 55.7 bits (134), Expect = 1e-07
 Identities = 70/342 (20%), Positives = 128/342 (37%), Gaps = 25/342 (7%)

Query: 101 KEKQLELVRKRIGECECELQLK------EGELNLVKKSVEEWLEKLDLKMKEVGLVEKSN 154
            E+   L    I   E +LQ        +  L   +   +  LE+ +L   +   + +  
Sbjct: 180 IEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEENLLYLDYLKLNEER 239

Query: 155 DKSLVDQRRLENLIKDFCEQIELKEKD-LRKIRSSIEECEKELVMKEKHASSLQSLIEDY 213
              L +  R E    +  +Q   KE++ L ++    +E EKE  ++E+    L    E+ 
Sbjct: 240 IDLLQELLRDEQEEIESSKQELEKEEEILAQVLKENKEEEKEKKLQEEELKLLAKEEEEL 299

Query: 214 AEELESKEKLYDEIKKSIIQCETKLDCKKKELELTQTSIIELS----------LELHLEE 263
             EL   E+   + ++ + + E +L   +KEL+  +  I EL                EE
Sbjct: 300 KSELLKLERRKVDDEEKLKESEKELKKLEKELKKEKEEIEELEKELKELEIKREAEEEEE 359

Query: 264 EKLESLQRIVRLRENELD-SKEEKLDAMKEEMKKYFNDIELKEREFNGIRKCIEKRSQEL 322
           E+LE LQ  +   E EL   K+ + + +    K    ++ELK  E    +  +E   QE 
Sbjct: 360 EQLEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKNEEEKEAKLLLELSEQEE 419

Query: 323 TL-------KEKQLKCVQESLEGCRNEFEEKENELISVEKLIDKCSEELELKKKHLCVIE 375
            L       + K ++ ++ESLE  + +  E++ EL      + K   EL+  +  L   +
Sbjct: 420 DLLKEEKKEELKIVEELEESLETKQGKLTEEKEELEKQALKLLKDKLELKKSEDLLKETK 479

Query: 376 NSAAELSDECESNELELDLIQTMAIGYLKQLKEKEKQFHSLK 417
                   E      +L+          + L           
Sbjct: 480 LVKLLEQLELLLLRQKLEEASQKESKAREGLAVLLALIKDGV 521

This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination. Length = 1162

>gnl|CDD|129694 TIGR00606, rad50, rad50

 Score = 54.3 bits (130), Expect = 3e-07
 Identities = 92/516 (17%), Positives = 190/516 (36%), Gaps = 61/516 (11%)

Query: 40  VQWKDLEEHLDISMKSLEKQSNDADSKIRLLDQ---RAKEIESKESDLVLAERRIK--EC 94
            + K L   +++  + LEK+  +    I+ L Q    +  I   + +L  AER +   E 
Sbjct: 433 DEKKGLGRTIELKKEILEKKQEELKFVIKELQQLEGSSDRILELDQELRKAERELSKAEK 492

Query: 95  NFELACK---EKQLELVRKRIGECECELQLKEGELNLVKKSVEEWLEKLDLKMKEVGLVE 151
           N          K L+  +  +     +L  +  +LN    +  +       KM +   + 
Sbjct: 493 NSLTETLKKEVKSLQNEKADLDRKLRKLDQEMEQLNHHTTTRTQMEMLTKDKMDKDEQIR 552

Query: 152 KSNDKSLVDQRRLENLIKDFCEQIELKEKDLRKIRSSIEECEKELVMKEKHASSLQSLIE 211
           K   +       L +L+  F  + +L E  L      I +    L    K  +SL+    
Sbjct: 553 KIKSRH---SDELTSLLGYFPNKKQL-EDWLHSKSKEINQTRDRLAKLNKELASLEQNKN 608

Query: 212 DYAEELESKEKLYDEIKKSIIQC------ETKLDCKKKELELTQTSIIELSLELHLEEEK 265
               ELESKE+     +  +         E+ L+  K+E+E +      L+    +  + 
Sbjct: 609 HINNELESKEEQLSSYEDKLFDVCGSQDEESDLERLKEEIEKSSKQRAMLAGATAVYSQF 668

Query: 266 LESL-----------QRIVRLRE--NELDSK-EEKLDAMKEEMKKYFNDIELKEREFNGI 311
           +  L           QR+ +      E  S  + KL    +++K   ++++ KE+  + +
Sbjct: 669 ITQLTDENQSCCPVCQRVFQTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEM 728

Query: 312 RKCIEKRSQELTLKEKQLKCVQESLEGCRNEFEEKENELISVEKLIDKCSEELELKKKHL 371
                 R   + LKEK++  ++  L+    + +  +N++   E L+     E E  K   
Sbjct: 729 LGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAK--- 785

Query: 372 CVIENSAAELSDECESNELELDLIQTMAIGYLKQLKEKEKQFHSLKEALDERWQDLEIKE 431
                        C ++   ++  Q        +LK+ E++       L     D  +++
Sbjct: 786 ------------VCLTDVTIMERFQ-------MELKDVERKIAQQAAKLQGSDLDRTVQQ 826

Query: 432 RKFEERVKEFELRE--KEIESIRKAVEDRSKNLELKEKKL----SNNLHLQVKIEQPESL 485
              E++ K+ EL     +IE  RK ++D+ + ++  + K     S  L +   +++ +  
Sbjct: 827 VNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQF 886

Query: 486 KGNEGTKQLSLQSC-TMITGKNLQLLLNQHLQKHDL 520
           +         +QS    I     Q    +   + D 
Sbjct: 887 EEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQ 922

All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). Length = 1311

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 53.5 bits (129), Expect = 6e-07
 Identities = 49/229 (21%), Positives = 111/229 (48%), Gaps = 10/229 (4%)

Query: 262 EEEKLESLQRIVRLRENELDSKEEKLDAMKEEMKKYFNDIELKEREFNGIRKCIEKRSQE 321
           E  +L+ L+  +   + EL S + +L  ++  + +   ++    R+   I K IE+  QE
Sbjct: 672 EPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQE 731

Query: 322 LTLKEKQLKCVQESLEGCRNEFEEKENELISVEKLIDKCSEELELKKKHLCVIENSAA-- 379
               +++L+ ++E L     E E  ++EL  +E  I++  E+L   ++ L  +E   +  
Sbjct: 732 EEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHS 791

Query: 380 ---ELSDECESNELELDLIQTMAIGYLKQLKEKEKQFHSLKEALDERWQDLEIKERKFEE 436
              E+  E    E E+  I+      L+++++K  +    KE L++  Q+L+ +    +E
Sbjct: 792 RIPEIQAELSKLEEEVSRIE----ARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKE 847

Query: 437 RVKEFELREKEIESIRKAVEDRSKNLELKEKKLSNNL-HLQVKIEQPES 484
           ++K  E   + +   ++ +E+  + LE   + L + L  L+ + ++ E+
Sbjct: 848 QIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEA 896

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain

 Score = 53.4 bits (128), Expect = 6e-07
 Identities = 72/344 (20%), Positives = 135/344 (39%), Gaps = 7/344 (2%)

Query: 175 IELKEKDLRKIRSSIEECEKELVMKEKHASSLQSLIEDYAEELESKEKLYDEIKKSIIQC 234
           IE  E     I    E   +EL +KE+   +L+        ELE +  LY +  K     
Sbjct: 180 IEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEENLLYLDYLKL---N 236

Query: 235 ETKLDCKKKELELTQTSIIELSLELHLEEEKLESLQRIVRLRENELDSKEEKLDAMKEEM 294
           E ++D  ++ L   Q  I     EL  EEE L  + +  +  E E   +EE+L  + +E 
Sbjct: 237 EERIDLLQELLRDEQEEIESSKQELEKEEEILAQVLKENKEEEKEKKLQEEELKLLAKEE 296

Query: 295 KKYFNDIELKEREFNGIRKCIEKRSQELTLKEKQLKCVQESLEGCRNEFEEKENELISVE 354
           ++  +++   ER      + +++  +EL   EK+LK  +E +E    E +E E +  + E
Sbjct: 297 EELKSELLKLERRKVDDEEKLKESEKELKKLEKELKKEKEEIEELEKELKELEIKREAEE 356

Query: 355 KLIDKCSEELELKKKHLCVIENSAAELSDECES----NELELDLIQTMAIGYLKQLKEKE 410
           +  ++  +  E  ++    +       S+   S     E EL+L           L+  E
Sbjct: 357 EEEEQLEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKNEEEKEAKLLLELSE 416

Query: 411 KQFHSLKEALDERWQDLEIKERKFEERVKEFELREKEIESIRKAVEDRSKNLELKEKKLS 470
           ++   LKE   E  + +E  E   E +  +    ++E+E     +      L+  E  L 
Sbjct: 417 QEEDLLKEEKKEELKIVEELEESLETKQGKLTEEKEELEKQALKLLKDKLELKKSEDLLK 476

Query: 471 NNLHLQVKIEQPESLKGNEGTKQLSLQSCTMITGKNLQLLLNQH 514
               +++  +    L   +  +    +S        L  L+   
Sbjct: 477 ETKLVKLLEQLELLLLRQKLEEASQKESKAREGLAVLLALIKDG 520

This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination. Length = 1162

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 53.1 bits (128), Expect = 8e-07
 Identities = 64/313 (20%), Positives = 127/313 (40%), Gaps = 27/313 (8%)

Query: 168 IKDFCEQIELKEKDLRKIRSSIEECEKELVMKEKHASSLQSLIEDYAEELESKEKLYDEI 227
           + +F  + E   ++L ++  +IE  +  L++ EK     Q L E    E E  E+ Y  +
Sbjct: 165 VAEFDRKKEKALEELEEVEENIERLD--LIIDEK----RQQL-ERLRREREKAER-YQAL 216

Query: 228 KKSIIQCETKLDCKKKELELTQTSIIELSLELHLEEEKLESLQRIVRLRENELDSKEEKL 287
            K   + E       KE E  +     +  +L   EE+LE L   +   E  L+  E+ L
Sbjct: 217 LKEKREYEGYE--LLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLL 274

Query: 288 DAMKEEMKKYFNDIELKEREFNGIRKCIEKRSQELTLKEKQLKCVQESLEGCRNEFEEKE 347
           + + +++K       L E E   +++ I +   E+   E+ +   +  LE       + E
Sbjct: 275 EELNKKIKD------LGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLE 328

Query: 348 NELISVEKLIDKCSEELELKKKHLCVIENSAAELSDECESNELELDLIQTMAIGYLKQLK 407
            E+  +   I++   E+E ++K    +    AEL +E E    EL+ +         + +
Sbjct: 329 AEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEF----AETR 384

Query: 408 EKEKQFHSLKEALDERWQDLEIKERKFEERVKEFELR----EKEIESIR---KAVEDRSK 460
           ++ K +    E L     +L+ +  + +E ++            I  I      +E+  +
Sbjct: 385 DELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKE 444

Query: 461 NLELKEKKLSNNL 473
           +  L+ KK    L
Sbjct: 445 DKALEIKKQEWKL 457

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|220614 pfam10174, Cast, RIM-binding protein of the cytomatrix active zone

 Score = 52.7 bits (126), Expect = 1e-06
 Identities = 76/385 (19%), Positives = 159/385 (41%), Gaps = 40/385 (10%)

Query: 103 KQLELVRKRIGECECELQLKEGELNLVKKSVEEWLEKLDLKMKEVGLVEKSNDKSLVDQR 162
            +L L+R  + + +  ++  +  L+   + +++ LE L  K       E+ +++ L   R
Sbjct: 128 MELFLLRDTLEKLQLRMERLQQTLDARDEEIKKLLEMLQSKGLSAKAEEEDSER-LGRIR 186

Query: 163 RLENLIKDFCEQIELKEKDLRKIRSSIEECEKELVMKEKHASSLQSLIEDYAEELESKEK 222
             E+        +E KEK+   +R   EE  ++L M+   A +            E+ +K
Sbjct: 187 EAEDQQSHLEVLLEQKEKEHMMLR---EEIHQKLQMERDDAKT------------EASQK 231

Query: 223 LYDEIKKSIIQCETKLDCKKKELELTQTSIIELSLELHLEEEKLESLQRIVRLRENELDS 282
           L DE    I + E  L+  + E+   Q+       + +  ++++E+ +  +   + + D 
Sbjct: 232 LIDEKDTKIKEFEKMLEKAENEIYRLQSRCDTSEADRNRLDKEVEAERSALAAMKAKCDR 291

Query: 283 KEEKLDAMKEEMKKYFNDIELKEREFNGIRKCIEKRSQELTLKEKQLKCVQESLEGCRNE 342
             ++L   K E+     ++E    + + +R+ ++K  ++LT  E++   +Q  ++  R E
Sbjct: 292 AAQELSRKKTELLGLQTELETLANQDSDMRQHLDKLKEDLTRAEQEKAILQTEVDALRYE 351

Query: 343 FEEKENELISVEKLIDKCSEELELKKKHLCVIENSAAELSDECESNELELDLIQTMAIGY 402
            E K N L      +    EE       +        ++ D  E  E +L ++Q      
Sbjct: 352 LERKHNTLTKKTASLQAAQEEKATYAGEI-------EDMRDRYEKTERKLRVLQKKIENL 404

Query: 403 LKQLKEKEKQFHSLKEALDERWQDLE-----------------IKERKFEERVKEFELRE 445
            +  + KE++    KE L     D                   I ER  E+R ++    +
Sbjct: 405 QETFRRKERRLKEEKERLRSLQTDTNTDTALEKLEKALAEKERIIERLKEQRDRDERYEQ 464

Query: 446 KEIESIRKAVEDRSKNLELKEKKLS 470
           +E E+ +K  ED  + ++  + KLS
Sbjct: 465 EEFETYKKEFEDLKEEVQNLQLKLS 489

This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains. Length = 774

>gnl|CDD|129694 TIGR00606, rad50, rad50

 Score = 52.0 bits (124), Expect = 2e-06
 Identities = 98/501 (19%), Positives = 209/501 (41%), Gaps = 52/501 (10%)

Query: 4    CDNNKEELRLAESKKEILRRSYDLAHAQANSVL--NFTVQWKD-------LEEHLDISMK 54
            C +  EE  L   K+EI + S   A     + +   F  Q  D       + + +  +  
Sbjct: 632  CGSQDEESDLERLKEEIEKSSKQRAMLAGATAVYSQFITQLTDENQSCCPVCQRVFQTEA 691

Query: 55   SLEKQSNDADSKIRLLDQRAKEIES------KESDLVLAERRIKECNFELACKEKQLELV 108
             L++  +D  SK+RL   + K  ES      K  D +L     ++    +  KEK++  +
Sbjct: 692  ELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQS--IIDLKEKEIPEL 749

Query: 109  RKRIGECECELQLKEGELNLVKKSVEEWLEKLDLK---MKEVGLVEKSNDKSLVDQRRLE 165
            R ++ +   ++Q  + ++   +  +   + + +     + +V ++E+   +    +R++ 
Sbjct: 750  RNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKVCLTDVTIMERFQMELKDVERKIA 809

Query: 166  NLIKDFCEQIELKEKDLRKIRSSIEECEKELVMKEKHASSLQSLIEDYAEELESKEKLYD 225
                   +  +L ++ ++++    +E + EL          + LI+D  E+++  +   +
Sbjct: 810  QQAAKL-QGSDL-DRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTN 867

Query: 226  EIKKSIIQCETKLDCKKKELELTQTSIIELSLELHLEEEKLESLQRIVRLRENELDSKEE 285
            E+K   +Q  T L  +++  E       E+   +   ++  E    +    E +   KEE
Sbjct: 868  ELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEE 927

Query: 286  KLDAMKEEMKKY---FNDIELKEREFNGIRKCIEKRSQE-----LTLKEKQLKCVQESLE 337
             + + +   KK     NDI+ K +  +G  K IE + Q+     L  KE +L  V   LE
Sbjct: 928  LISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIENKIQDGKDDYLKQKETELNTVNAQLE 987

Query: 338  GCRNEFEEKENEL--------------------ISVEKLIDKCSEELELKKKHLCVI-EN 376
             C    E+   ++                    +++ K  ++  E  E  K+HL  + + 
Sbjct: 988  ECEKHQEKINEDMRLMRQDIDTQKIQERWLQDNLTLRKRENELKEVEEELKQHLKEMGQM 1047

Query: 377  SAAELSDECESNELELDLIQTMAIGYLKQLKEKEKQ-FHSLKEALDERWQDLEIKERKFE 435
               ++  E +  E  +DLI+   +  L + K  EK+  H  KE  + +++D E K R+  
Sbjct: 1048 QVLQMKQEHQKLEENIDLIKRNHVLALGRQKGYEKEIKHFKKELREPQFRDAEEKYREMM 1107

Query: 436  ERVKEFELREKEIESIRKAVE 456
              ++  EL  K+++   K ++
Sbjct: 1108 IVMRTTELVNKDLDIYYKTLD 1128

All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). Length = 1311

>gnl|CDD|100796 PRK01156, PRK01156, chromosome segregation protein; Provisional

 Score = 51.1 bits (122), Expect = 3e-06
 Identities = 81/449 (18%), Positives = 166/449 (36%), Gaps = 39/449 (8%)

Query: 43  KDLEEHLDISMKSLEKQSNDADSKIRLLDQRAKEIESKESDLVLAERRIKECNFELACKE 102
           KD+ + L   + +++       S    L+   K+I   E    +  + I+  + E     
Sbjct: 172 KDVIDMLRAEISNIDYLEEKLKSSNLELENIKKQIADDEKSHSITLKEIERLSIEYNNAM 231

Query: 103 KQLELVRKRIGECECELQLK---EGELNLVKKSVEEWLEKLD-LKMKEVGLVEKSNDKSL 158
                ++  + E      +K   E E+   +  +   LEK +  K  E   ++  ND   
Sbjct: 232 DDYNNLKSALNELSSLEDMKNRYESEIKTAESDLSMELEKNNYYKELEERHMKIINDPVY 291

Query: 159 VDQRRLENLIKDFCEQIELKEKDLRKIRSSIEECEKELVMKEKHASSLQSLIEDYAE--- 215
            ++  + +  K     IE K++ L  I + I +    +    K  S LQ    DY +   
Sbjct: 292 KNRNYINDYFKYK-NDIENKKQILSNIDAEINKYHAII----KKLSVLQKDYNDYIKKKS 346

Query: 216 ----------ELESKEKLYDEIKKSIIQCETKLDCKKKELELTQTSIIELSLELHLEEEK 265
                     ELE  E  Y+   KSI   + K++   K +E     I E+     ++ + 
Sbjct: 347 RYDDLNNQILELEGYEMDYNSYLKSIESLKKKIEEYSKNIERMSAFISEILKIQEIDPDA 406

Query: 266 LESLQRIVRLRENELDSKEEKLDAMKEEMKKYFNDIELKEREFNGIRKCIEKRSQELTLK 325
           ++     + ++  ++ SK   L+     +++  +++       NG   C    +     K
Sbjct: 407 IKKELNEINVKLQDISSKVSSLNQRIRALRENLDELSRNMEMLNGQSVCPVCGTTLGEEK 466

Query: 326 EKQL-KCVQESLEGCRNEFEEKENELISV-EKLIDKCSEELELKKKHLCVIENSAAELSD 383
              +     E       +  E E E+  + EK++D    +  L+ + +    N   ++  
Sbjct: 467 SNHIINHYNEKKSRLEEKIREIEIEVKDIDEKIVDLKKRKEYLESEEINKSINEYNKIES 526

Query: 384 ECESNELELDLIQTMAIGYLKQLKEKEKQFHSLKEALDERWQ--DLEIKERKFEERVKEF 441
                +LE   I+      + +LK+K  ++    E +  R++   LE  + K    +   
Sbjct: 527 --ARADLEDIKIK------INELKDKHDKY----EEIKNRYKSLKLEDLDSKRTSWLNAL 574

Query: 442 ELREK-EIESIRKAVEDRSKNLELKEKKL 469
            +    +IE+ R    +  K L   E +L
Sbjct: 575 AVISLIDIETNRSRSNEIKKQLNDLESRL 603

Length = 895

>gnl|CDD|221952 pfam13166, AAA_13, AAA domain

 Score = 50.4 bits (121), Expect = 5e-06
 Identities = 42/210 (20%), Positives = 91/210 (43%), Gaps = 20/210 (9%)

Query: 163 RLENLIKD-FCEQIELKEKDLRKIRSSIEECEKELVMKEKHASSLQSLIEDYAEELESKE 221
            LE    + + E IE  E+ + K  S IE+  +EL    +     +    ++  ++E  +
Sbjct: 271 ELEAHFDEEYQELIEQLEELIDKYESHIEKALEEL----ESILDTEKENSEFKLDVEELK 326

Query: 222 KLYDEIKKSIIQCETKLDCKKK------ELELTQTSIIELSLELHLEEEKLESLQRIVRL 275
            L + +++ + +   KL+ K K      ELE     I  ++  +    E +      +  
Sbjct: 327 ALLEALEEILEKNLQKLEEKLKDPSTSIELESITDLIESINDIIDAINELIREHNEKIDN 386

Query: 276 RENELDSKEEKLDAMKEEMKKYFNDIELKEREFNGIRKCIEKRSQELTLKEKQLKCVQES 335
            + E +  ++KL      + +   DI+  ++E  G+ K I          EK++K ++  
Sbjct: 387 LKKEKNKAKKKL--WLHLVAELKEDIDAYQKEKKGLEKAINS-------LEKEIKQLEAE 437

Query: 336 LEGCRNEFEEKENELISVEKLIDKCSEELE 365
           ++    E +E E +L ++E   D+ ++ L+
Sbjct: 438 IKALEKEIKELEKQLTNIEPTADEINKLLK 467

This family of domains contain a P-loop motif that is characteristic of the AAA superfamily. Many of the proteins in this family are conjugative transfer proteins. This family includes the PrrC protein that is thought to be the active component of the anticodon nuclease. Length = 713

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 50.5 bits (121), Expect = 6e-06
 Identities = 54/238 (22%), Positives = 115/238 (48%), Gaps = 27/238 (11%)

Query: 261 LEEEKLESLQRIVRLRENELDSKEEKLDAMKEEMKKYFNDIELKEREFNGIRKCIEKRSQ 320
            ++ +L+ L+  +   E +L+  EE+L ++K E++   + +E   R+   + + +E+  +
Sbjct: 664 AQKRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKR 723

Query: 321 ELTLKEKQLKCVQESLEGCRNEFEEKENELISVEKLIDKCSEELELKKKHLCVIENSAAE 380
           EL   E++L+ +Q  LE    E EE E EL  +++ +++  EELE  ++ L  ++    E
Sbjct: 724 ELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEE 783

Query: 381 LSDECESNELELDLIQTMAIGYLKQLKEKEKQFHSLKEALDERWQDLEIKERKFEERVKE 440
           L ++ ++ + EL+ ++       ++L+E E++  +L+  L+   Q  E  E         
Sbjct: 784 LEEKRQALQEELEELE-------EELEEAERRLDALERELESLEQRRERLE--------- 827

Query: 441 FELREKEIESIRKAVEDRSKNLELKEKKLSNNLHLQVKIEQPESLKGNEGTKQLSLQS 498
                +EIE + + +E      EL+EK       L+   ++ E LK      +   + 
Sbjct: 828 -----QEIEELEEEIE------ELEEKLDELEEELEELEKELEELKEELEELEAEKEE 874

Length = 1163

>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain

 Score = 49.2 bits (117), Expect = 1e-05
 Identities = 61/262 (23%), Positives = 115/262 (43%), Gaps = 13/262 (4%)

Query: 249 QTSIIELSLELH-----------LEEEKLESLQRIVRLRENELDSKEEKLDAMKEEMKKY 297
           +  I E +               L EE     + I+ L E +L   + K  A K+ ++ Y
Sbjct: 156 RLEIEEEAAGSREKRKKKERLKKLIEETENLAELIIDLEELKLQELKLKEQA-KKALEYY 214

Query: 298 FNDIELKEREFNGIRKCIEKRSQE-LTLKEKQLKCVQESLEGCRNEFEEKENELISVEKL 356
               +L+  E N +     K ++E + L ++ L+  QE +E  + E E++E  L  V K 
Sbjct: 215 QLKEKLELEEENLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQELEKEEEILAQVLKE 274

Query: 357 IDKCSEELELKKKHLCVIENSAAELSDECESNELELDLIQTMAIGYLKQLKEKEKQFHSL 416
             +  +E +L+++ L ++     EL  E    E      +       K+LK+ EK+    
Sbjct: 275 NKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKELKKLEKELKKE 334

Query: 417 KEALDERWQDLEIKERKFEERVKEFELREKEIESIRKAVEDRSKNLELKEKKLSNNLHLQ 476
           KE ++E  ++L+  E K E   +E E  EK  E + +  E+     +L+ ++LS+   L+
Sbjct: 335 KEEIEELEKELKELEIKREAEEEEEEQLEKLQEKLEQLEEELLAKKKLESERLSSAAKLK 394

Query: 477 VKIEQPESLKGNEGTKQLSLQS 498
            +  + ++ +  E    L L  
Sbjct: 395 EEELELKNEEEKEAKLLLELSE 416

This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination. Length = 1162

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 48.1 bits (115), Expect = 2e-05
 Identities = 57/263 (21%), Positives = 123/263 (46%), Gaps = 19/263 (7%)

Query: 217 LESKEKLYDEIKKSIIQCETKLDCKKKELELTQTSIIELSLELHLEEEKLESLQRIVRLR 276
           L+  E  Y  + + I + + +++  +K ++  +T  IE  ++   E+E  E L+ I    
Sbjct: 157 LDDYENAYKNLGEVIKEIKRRIERLEKFIK--RTENIEELIK-EKEKELEEVLREI---- 209

Query: 277 ENELDSKEEKLDAMKEEMKKYFNDIELKEREFNGIRKCIEKRSQELTLKEKQLKCVQESL 336
            NE+ S+  +L    E+++K   ++E  + E   + K +E         E++++ ++E +
Sbjct: 210 -NEISSELPELREELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERI 268

Query: 337 EGCRNEFEEKENELISVEKLIDKCSEELELKK------KHLCVIENSAAELSDECESNEL 390
           E  + E EE E ++  +++L +K  E ++L +        L  IE   + L +E    E 
Sbjct: 269 EELKKEIEELEEKVKELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEE 328

Query: 391 ELDLIQTMAIGYLKQLKEKEKQFHSLKEALDERWQDLE----IKERKFEERVKEFELREK 446
            +  ++      L++LK+K K+     E L+ER +  E     KE     + +   L  +
Sbjct: 329 RIKELEEKE-ERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTPE 387

Query: 447 EIESIRKAVEDRSKNLELKEKKL 469
           ++E   + +E   + +E +  K+
Sbjct: 388 KLEKELEELEKAKEEIEEEISKI 410

Length = 880

>gnl|CDD|220614 pfam10174, Cast, RIM-binding protein of the cytomatrix active zone

 Score = 48.5 bits (115), Expect = 2e-05
 Identities = 45/258 (17%), Positives = 112/258 (43%), Gaps = 4/258 (1%)

Query: 155 DKSLVDQRRLENLIKDFCEQIELKEKDLRKIRSSIEECEKELVMKEKHASSLQSLIEDYA 214
           D++  +  R +  +     ++E        +R  +++ +++L   E+  + LQ+ ++   
Sbjct: 290 DRAAQELSRKKTELLGLQTELETLANQDSDMRQHLDKLKEDLTRAEQEKAILQTEVDALR 349

Query: 215 EELESKEKLYDEIKKSIIQCETKLDCKKKELELTQTSIIELSLELHLEEEKLESLQRIVR 274
            ELE K     +   S+   + +      E+E  +    +   +L + ++K+E+LQ   R
Sbjct: 350 YELERKHNTLTKKTASLQAAQEEKATYAGEIEDMRDRYEKTERKLRVLQKKIENLQETFR 409

Query: 275 LRENELDSKEEKLDAMKEEMKKYFNDIELKEREFNGIRKCIEKRSQELTLKEKQLKCVQE 334
            +E  L  ++E+L      ++   N     E+    + +      +    +++  +  QE
Sbjct: 410 RKERRLKEEKERL----RSLQTDTNTDTALEKLEKALAEKERIIERLKEQRDRDERYEQE 465

Query: 335 SLEGCRNEFEEKENELISVEKLIDKCSEELELKKKHLCVIENSAAELSDECESNELELDL 394
             E  + EFE+ + E+ +++  + +   +LEL K+ +  + ++  +   + E   +EL+ 
Sbjct: 466 EFETYKKEFEDLKEEVQNLQLKLSERELQLELLKEEVSKLASNQLKQRSDLERAHIELEK 525

Query: 395 IQTMAIGYLKQLKEKEKQ 412
           I+       K+LK     
Sbjct: 526 IREKHEKLEKELKRLRAN 543

This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains. Length = 774

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 48.1 bits (115), Expect = 3e-05
 Identities = 59/227 (25%), Positives = 109/227 (48%), Gaps = 12/227 (5%)

Query: 263 EEKLESLQRIVRLRENELDSKEEKLDA---MKEEMKKYFNDIELKEREFNGIRKCIEKRS 319
           E   ++L  +++  +  ++  E+ +     ++E +K+   ++E   RE N I   + +  
Sbjct: 161 ENAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELR 220

Query: 320 QELTLKEKQLKCVQESLEGCRNEFEEKENELISVEKLIDKCSEELELKKKHLCVIENSAA 379
           +EL   EK++K     LE  + E EE E EL S+E        +LE K + L        
Sbjct: 221 EELEKLEKEVK----ELEELKEEIEELEKELESLEGSK----RKLEEKIRELEERIEELK 272

Query: 380 ELSDECESNELELDLIQTMAIGYLKQLKEKEKQFHSLKEALDERWQDLEIKERKFEERVK 439
           +  +E E    EL  ++  A  Y+K L E  +++      +++R   LE +    EER+K
Sbjct: 273 KEIEELEEKVKELKELKEKAEEYIK-LSEFYEEYLDELREIEKRLSRLEEEINGIEERIK 331

Query: 440 EFELREKEIESIRKAVEDRSKNLELKEKKLSNNLHLQVKIEQPESLK 486
           E E +E+ +E ++K +++  K LE  E++       + K E+ E LK
Sbjct: 332 ELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLK 378

Length = 880

>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional

 Score = 47.7 bits (114), Expect = 3e-05
 Identities = 80/436 (18%), Positives = 184/436 (42%), Gaps = 64/436 (14%)

Query: 62  DADSKIRLLDQRAKEIESKESDLVLAERRIKECNFELACKEKQLELVRKRIGECECELQL 121
           DAD++   ++ R +E+E ++ +L     R++EC        ++ E +R+   + E   + 
Sbjct: 306 DADAEA--VEARREELEDRDEEL---RDRLEECRVAAQAHNEEAESLREDADDLEERAEE 360

Query: 122 K-------EGELNLVKKSVEEWLEKLDLKMKEVGLVEKSNDKSLVDQRRLENLIKDFCEQ 174
                   E EL   +++VE+  E+++   +E+  + +    + VD    E+ +++  E+
Sbjct: 361 LREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREE 420

Query: 175 I-ELKEK------DLRKIRSSIEECEKEL-----------VMKEKHASSLQSLIEDYAEE 216
             EL+E+       LR  R  +EE E  L           V    H  +    IE+  E 
Sbjct: 421 RDELREREAELEATLRTARERVEEAEALLEAGKCPECGQPVEGSPHVET----IEEDRER 476

Query: 217 LESKEKLYDEIKKSIIQCETKLDCKKKELELTQTSIIELSLELHLEEEKLESLQRIVRLR 276
           +E  E   +++++ + + E +L+            ++E    +   EE+ E L+ ++  R
Sbjct: 477 VEELEAELEDLEEEVEEVEERLE--------RAEDLVEAEDRIERLEERREDLEELIAER 528

Query: 277 ENELDSKEEKLDAMKEEMKKYFNDIELKEREFNGIRKCIEKRSQELTLKEKQLKCVQESL 336
              ++ K E+ + ++E   +   + E K        +  E+  +E+     +L  ++E +
Sbjct: 529 RETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERI 588

Query: 337 EGCRN------EFEEKENELISVEKLIDKCSEELELKKKHLCVIENSAAELSDECESNEL 390
           E             + E+E+  + +  +  +E  + +++ L        EL  E +   +
Sbjct: 589 ESLERIRTLLAAIADAEDEIERLREKREALAELNDERRERLAEKRERKRELEAEFDEARI 648

Query: 391 ELDLIQTMAIGYLKQLKEKEKQFHSLKEALDERWQDLEIKERKFEERVKEFELREKEIES 450
           E             + +E +++     E ++E+  +L  +    +  +   E   +E+E 
Sbjct: 649 E-------------EAREDKERAEEYLEQVEEKLDELREERDDLQAEIGAVENELEELEE 695

Query: 451 IR---KAVEDRSKNLE 463
           +R   +A+E+R + LE
Sbjct: 696 LRERREALENRVEALE 711

Length = 880

>gnl|CDD|100796 PRK01156, PRK01156, chromosome segregation protein; Provisional

 Score = 48.0 bits (114), Expect = 3e-05
 Identities = 89/558 (15%), Positives = 210/558 (37%), Gaps = 61/558 (10%)

Query: 5   DNNKEELRLAESKKEILRRSYDLAHAQANSVLNFTVQWKDLEEHLDISMKSLEKQSNDAD 64
           +N K+++   E    I  +  +    + N+ ++    + +L+  L+  + SLE   N  +
Sbjct: 200 ENIKKQIADDEKSHSITLKEIERLSIEYNNAMD---DYNNLKSALN-ELSSLEDMKNRYE 255

Query: 65  SKIRLLDQRAKEIESKESDLVLAERRIKECNFELACKEKQLELVRKRIGECECELQLKEG 124
           S+I+  +        K +     E R  +   +   K       R  I +   + +    
Sbjct: 256 SEIKTAESDLSMELEKNNYYKELEERHMKIINDPVYKN------RNYIND-YFKYKNDIE 308

Query: 125 ELNLVKKSVEEWLEKLDLKMKEVGLVEKSNDKSLVDQRRLENLIKDFCEQIELKE----- 179
               +  +++  + K    +K++ +++K  +  +  + R ++L     + +EL+      
Sbjct: 309 NKKQILSNIDAEINKYHAIIKKLSVLQKDYNDYIKKKSRYDDLNN---QILELEGYEMDY 365

Query: 180 ----KDLRKIRSSIEECEKELVMKEKHASSLQSLIEDYAEELESKEKLYDEIKKSIIQCE 235
               K +  ++  IEE  K +       S +  + E   + ++ +    +EI   +    
Sbjct: 366 NSYLKSIESLKKKIEEYSKNIERMSAFISEILKIQEIDPDAIKKE---LNEINVKLQDIS 422

Query: 236 TKLDCKKKELELTQTSIIELSLEL--------------HLEEEKLESLQRIVRLRENELD 281
           +K+    + +   + ++ ELS  +               L EEK      I+     +  
Sbjct: 423 SKVSSLNQRIRALRENLDELSRNMEMLNGQSVCPVCGTTLGEEKSN---HIINHYNEKKS 479

Query: 282 SKEEKLDAMKEEMKKYFNDI-ELKEREFNGIRKCIEKRSQE---LTLKEKQLKCVQESLE 337
             EEK+  ++ E+K     I +LK+R+     + I K   E   +      L+ ++  + 
Sbjct: 480 RLEEKIREIEIEVKDIDEKIVDLKKRKEYLESEEINKSINEYNKIESARADLEDIKIKIN 539

Query: 338 GCRNEFEEKENELISVEKLIDKCSEELELKK----KHLCVIENSAAELSDECESNELELD 393
             + +  +K  E+ +  K +    E+L+ K+      L VI         + E+N    +
Sbjct: 540 ELK-DKHDKYEEIKNRYKSLK--LEDLDSKRTSWLNALAVISLI------DIETNRSRSN 590

Query: 394 LIQTMAIGYLKQLKEKEKQFHSLKEALDERWQDLEIKERKFEERVKEFELREKEIESIRK 453
            I+        +L+E E  F   K  +D+  +++E +      +  E +  +  IE +R 
Sbjct: 591 EIKKQLNDLESRLQEIEIGFPDDKSYIDKSIREIENEANNLNNKYNEIQENKILIEKLRG 650

Query: 454 AVEDRSKNLELKEKKLSNNLHLQVKIEQPESLKGNEGTKQLSLQSCTMITGKNLQLLLNQ 513
            +++  K +   +  + +   +  +I   E     +  K L          ++   +L  
Sbjct: 651 KIDNYKKQIAEIDSIIPDLKEITSRINDIED-NLKKSRKALDDAKANRARLESTIEILRT 709

Query: 514 HLQKHDLVFGEISHTLTK 531
            + +      +I+ TL  
Sbjct: 710 RINELSDRINDINETLES 727

Length = 895

>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain

 Score = 47.7 bits (113), Expect = 4e-05
 Identities = 64/289 (22%), Positives = 126/289 (43%), Gaps = 12/289 (4%)

Query: 44  DLEEHLDISMKSLEKQSNDA--DSKIRLLDQRAKEIESKESDLVLAERRIKECNFELACK 101
              E L +    L++Q+  A    +++   +  +E       L L E RI      L  +
Sbjct: 191 IDLEELKLQELKLKEQAKKALEYYQLKEKLELEEENLLYLDYLKLNEERIDLLQELLRDE 250

Query: 102 EKQLELVRKRIGECECELQLKEGELNLVKKSVEEWLEKLDLKMKEVGLVEKSNDKSLVDQ 161
           ++++E  ++ + + E  L     E    +K  +   E+L L  KE   ++    K    +
Sbjct: 251 QEEIESSKQELEKEEEILAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRK 310

Query: 162 RRLENLIKDFCEQIELKEKDLRKIRSSIEECEKELVMKEKHASSLQSLIEDYAEELESKE 221
              E  +K+  ++++  EK+L+K +  IEE EKE          L+ L      E E +E
Sbjct: 311 VDDEEKLKESEKELKKLEKELKKEKEEIEELEKE----------LKELEIKREAEEEEEE 360

Query: 222 KLYDEIKKSIIQCETKLDCKKKELELTQTSIIELSLELHLEEEKLESLQRIVRLRENELD 281
           +L    +K     E  L  KK E E   ++      EL L+ E+ +  + ++ L E E D
Sbjct: 361 QLEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKNEEEKEAKLLLELSEQEED 420

Query: 282 SKEEKLDAMKEEMKKYFNDIELKEREFNGIRKCIEKRSQELTLKEKQLK 330
             +E+     + +++    +E K+ +    ++ +EK++ +L   + +LK
Sbjct: 421 LLKEEKKEELKIVEELEESLETKQGKLTEEKEELEKQALKLLKDKLELK 469

This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination. Length = 1162

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 47.0 bits (112), Expect = 6e-05
 Identities = 58/293 (19%), Positives = 119/293 (40%), Gaps = 36/293 (12%)

Query: 41  QWKDLEEHLDISMKSLEKQSNDADSKIRLLDQRAKEIESK---------------ESDLV 85
           Q   LEE L+   + + +     +   +LL++  K+I+                 E+++ 
Sbjct: 245 QLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIA 304

Query: 86  LAERRIKECNFELACKEKQLELVRKRIGECECELQLKEGELNLVKKSVEEWLE------- 138
             ER I E   EL   E++L  +   I +   E++  E E+   +K  ++  E       
Sbjct: 305 SLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKE 364

Query: 139 KLDLKMKEVGLVEKSNDKSLVDQRRLENLIKDFCEQIELKEKDLRKIRSSIEECEKELVM 198
           +L+    E+  V+K   ++  + +     ++    +I   +++L +++  ++   +EL  
Sbjct: 365 ELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEEL-- 422

Query: 199 KEKHASSLQSLIEDYAEELESKEKLYDEIKKSIIQCETKLDCKKKELELTQTSIIELSLE 258
                +++  +     E  E KE    EIKK     E KL+    +L   +  + +L  E
Sbjct: 423 -ADLNAAIAGIEAKINELEEEKEDKALEIKKQ----EWKLEQLAADLSKYEQELYDLKEE 477

Query: 259 LHLEEEKLESLQRIVRLRENELDSKEEKLDAMKEEMKKYFNDIELKEREFNGI 311
               E++L  LQR       EL   E +  A +E ++      E+ +    G+
Sbjct: 478 YDRVEKELSKLQR-------ELAEAEAQARASEERVRGGRAVEEVLKASIQGV 523

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|218636 pfam05557, MAD, Mitotic checkpoint protein

 Score = 46.8 bits (111), Expect = 6e-05
 Identities = 62/283 (21%), Positives = 116/283 (40%), Gaps = 24/283 (8%)

Query: 205 SLQSLIEDYAEELESKEKLYDEIKKSIIQCETKLDCKKKELELTQTSIIELSLELHLEEE 264
             +S +     EL  KE    E K++ I+ E K     +  E      +EL + L   EE
Sbjct: 65  RSKSKLIQLENELMQKEL---EHKRAQIELERKASTLAENYERELDRNLELEVRLKALEE 121

Query: 265 KLESLQRIVRLRENELDSKEEKLDAMKEEMKKYFNDIELKEREFNGIRKCIEKRSQELTL 324
             +  +      E E    ++KLDA      K  N+ E + +E       I+    E+  
Sbjct: 122 LEKKAENEAAEAEEEAKLLKDKLDAES---LKLQNEKEDQLKEAKESISRIKNDLSEMQC 178

Query: 325 K----EKQLKCVQESLEGCRNEFEEKENELISVEKLIDKCSEELELKKKHLCVIENSAAE 380
           +    + +LK ++  LE  R + EE + EL   EK +   + E      +          
Sbjct: 179 RAQNADTELKLLESELEELREQLEECQKELAEAEKKLQSLTSEQASSADN----SVKIKH 234

Query: 381 LSDECESNELELDLIQTMAIGYLK--QLKEKEKQFHSLKEALDERWQDLEIKERKFEERV 438
           L +E +  E + +++++M    L+  +L+ +          L    +D E+     +E +
Sbjct: 235 LEEELKRYEQDAEVVKSMKEQLLQIPELERELAALREENRKLRSMKEDNEL----LKEEL 290

Query: 439 KEFELREKEIESIRKAVEDRSKNLELKEKKLSNNLHLQVKIEQ 481
           ++ + R +  E +R+ + D    LEL+++KL N L     + Q
Sbjct: 291 EDLQSRLERFEKMREKLAD----LELEKEKLENELKSWKSLLQ 329

This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated. Length = 722

>gnl|CDD|129705 TIGR00618, sbcc, exonuclease SbcC

 Score = 46.5 bits (110), Expect = 8e-05
 Identities = 72/497 (14%), Positives = 168/497 (33%), Gaps = 55/497 (11%)

Query: 8   KEELRLAESKKEILRRSYDLAHAQANSVLNFTVQWKDLEEHLDISMKSLEKQSNDADSKI 67
            ++L+    + +IL+R       +  ++   T  ++DL+  L  + K  E Q   A+   
Sbjct: 392 TQKLQSLCKELDILQR-------EQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCA 444

Query: 68  RLLDQRAKEIESKESDLVLAERRIKECNFELACKEKQLELVRKRIGECECELQLKEGELN 127
             +   A+  + ++  L  + + +KE   +L  KE+      ++       L   + E  
Sbjct: 445 AAITCTAQCEKLEKIHLQESAQSLKEREQQLQTKEQIHLQETRKKAVVLARLLELQEEPC 504

Query: 128 LVKKSVEEWLEKLDLKMKEVGLVEKSNDKSLVDQRRLENLIKDFCEQIELKEKDLRKIRS 187
            +  S        +   +++              RR++             E+   ++ +
Sbjct: 505 PLCGSCIH----PNPARQDIDNPG-------PLTRRMQRG-----------EQTYAQLET 542

Query: 188 SIEECEKELVMKEKHASSLQSLIEDYAEELESKEKLYDEIKKSIIQCETKLDCKKKELEL 247
           S E+   +L  + K  +SL+  +++  +      +  +  K+ I   +      +   E 
Sbjct: 543 SEEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEK 602

Query: 248 TQTSIIELSLELHLEEEKLESLQRIVRLRENE----------------------LDSKEE 285
              +   L+ E H    KL+  Q +  +R +                        +   E
Sbjct: 603 LSEAEDMLACEQHALLRKLQPEQDLQDVRLHLQQCSQELALKLTALHALQLTLTQERVRE 662

Query: 286 KLDAMKEEMKKYFNDIELKEREFNGIRKCIEKRSQELTLKEKQLKCVQESLEGCRNEFEE 345
              +++   K+     +L  ++    ++ +    + L   +  L+ ++  +E    EF E
Sbjct: 663 HALSIRVLPKELLASRQLALQKMQSEKEQLTYWKEMLAQCQTLLRELETHIEEYDREFNE 722

Query: 346 KENELISVEKLIDKCSEELELKKKHLCVIENSAAELSDECESNELELDLIQTMAIGYLKQ 405
            EN   S   L    +   +   + L  + + A  +           +   T A+    +
Sbjct: 723 IENASSS---LGSDLAAREDALNQSLKELMHQARTVLKARTEAHFNNNEEVTAALQTGAE 779

Query: 406 LKEKEKQFHSLKEALDERWQDLEIKERKFEERVKEFEL-REKEIESIRKAVEDRSKNLEL 464
           L     +        +E    L+  E +  + +   E     + E++ +  E     LE 
Sbjct: 780 LSHLAAEIQFFNRLREEDTHLLKTLEAEIGQEIPSDEDILNLQCETLVQEEEQFLSRLEE 839

Query: 465 KEKKLSNNLHLQVKIEQ 481
           K   L    H  +K E+
Sbjct: 840 KSATLGEITHQLLKYEE 856

All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 1042

>gnl|CDD|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]

 Score = 45.8 bits (108), Expect = 1e-04
 Identities = 32/208 (15%), Positives = 89/208 (42%), Gaps = 4/208 (1%)

Query: 174 QIELKEKDLRKIRSSIEECEKELVMKEKHASSLQSLIEDYAEELESKEKLYDEIKKSIIQ 233
           Q++     LR +R+ +   + E    E    + +S ++   +E E+  +     ++++ +
Sbjct: 75  QLDDIRPQLRALRTELGTAQGEKRAAETEREAARSELQKARQEREAVRQELAAARQNLAK 134

Query: 234 CETKLDCKKKELELTQTSIIELSLELHLEEEKLESLQRIVRLRENELDSKEEKLDAMKEE 293
            + +L    K+ +  QT +  L+ +    E + +SLQ      + +L +   +L +   +
Sbjct: 135 AQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQA----SQKQLQASATQLKSQVLD 190

Query: 294 MKKYFNDIELKEREFNGIRKCIEKRSQELTLKEKQLKCVQESLEGCRNEFEEKENELISV 353
           +K     IE + +         + R++EL  +    +   ++++    +  +K  ++ + 
Sbjct: 191 LKLRSAQIEQEAQNLATRANAAQARTEELARRAAAAQQTAQAIQQRDAQISQKAQQIAAR 250

Query: 354 EKLIDKCSEELELKKKHLCVIENSAAEL 381
            + I +   +L+  +     +E   A+L
Sbjct: 251 AEQIRERERQLQRLETAQARLEQEVAQL 278

Length = 499

>gnl|CDD|129694 TIGR00606, rad50, rad50

 Score = 45.4 bits (107), Expect = 2e-04
 Identities = 54/260 (20%), Positives = 106/260 (40%), Gaps = 16/260 (6%)

Query: 213 YAEELESKEKLYDEIKKSIIQCETKLDCKKKELELTQTSIIELSLELHLEEEKLESLQRI 272
           Y + LE+  ++     + + + + +     K L+  +    E+  ++  +E +LES + I
Sbjct: 184 YIKALETLRQVRQTQGQKVQEHQME----LKYLKQYKEKACEIRDQITSKEAQLESSREI 239

Query: 273 VRLRENELDSKEEKLDAMKEEMKKYFNDIELKEREFNGIRKCIEKRSQELTLKEKQLKCV 332
           V+  ENELD  + +L  + E        ++ + +     +K +EK + E  L+ K  K  
Sbjct: 240 VKSYENELDPLKNRLKEI-EHNLSKIMKLDNEIKALKSRKKQMEKDNSE--LELKMEKVF 296

Query: 333 QESLEGCRNEFEEKENELISVEKLIDKCSEELELKKKHLCVIENSAAELSDECESNELEL 392
           Q + E   + +   +  +   E+ +  C  ELE   K   ++     EL  E    +L+ 
Sbjct: 297 QGTDEQLNDLYHNHQRTVREKERELVDCQRELEKLNKERRLLNQEKTELLVEQGRLQLQA 356

Query: 393 DLIQTMAIGYLKQLKEKEKQFHSLKEALD--ERWQDLEIKERKFEERVKEFELREKEIES 450
           D  Q           +   Q  + +  LD  ER    E + + F   V E +  E E ++
Sbjct: 357 DRHQEHIRAR-----DSLIQSLATRLELDGFERGPFSERQIKNFHTLVIERQ--EDEAKT 409

Query: 451 IRKAVEDRSKNLELKEKKLS 470
             +   D      LK+++  
Sbjct: 410 AAQLCADLQSKERLKQEQAD 429

All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). Length = 1311

>gnl|CDD|218636 pfam05557, MAD, Mitotic checkpoint protein

 Score = 44.9 bits (106), Expect = 2e-04
 Identities = 100/472 (21%), Positives = 192/472 (40%), Gaps = 48/472 (10%)

Query: 55  SLEKQSNDADSKIRLLDQRAKEIESK------ESDLVLAERRIKECNFEL---------- 98
           SL+KQ  ++      L QRA+ I SK      E++L+  E   K    EL          
Sbjct: 46  SLQKQVEES----MTLLQRAELIRSKSKLIQLENELMQKELEHKRAQIELERKASTLAEN 101

Query: 99  ----ACKEKQLELVRKRIGECECELQLK----EGELNLVKKSVEEWLEKLDLKMKEVGLV 150
                 +  +LE+  K + E E + + +    E E  L+K  ++    KL  + ++    
Sbjct: 102 YERELDRNLELEVRLKALEELEKKAENEAAEAEEEAKLLKDKLDAESLKLQNEKEDQLKE 161

Query: 151 EKSNDKSLVDQ-RRLENLIKDFCEQIELKEKDLRKIRSSIEECEKELVMKEKHASSLQSL 209
            K +   + +    ++   ++   +++L E +L ++R  +EEC+KEL   EK   SL S 
Sbjct: 162 AKESISRIKNDLSEMQCRAQNADTELKLLESELEELREQLEECQKELAEAEKKLQSLTSE 221

Query: 210 IEDYAEELESKEKLYDEIKKSIIQCETKLDCKKKELELTQTSIIELSLE-LHLEEEKLES 268
               A+     + L +E+K+     +     K  + +L Q   +E  L  L  E  KL S
Sbjct: 222 QASSADNSVKIKHLEEELKR---YEQDAEVVKSMKEQLLQIPELERELAALREENRKLRS 278

Query: 269 LQRIVRLRENELDSKEEKLDAMKEEMKKYFNDIELK----EREFNGIRKCIEKRSQELTL 324
           ++    L + EL+  + +L+   E+M++   D+EL+    E E    +  ++     L  
Sbjct: 279 MKEDNELLKEELEDLQSRLE-RFEKMREKLADLELEKEKLENELKSWKSLLQDIGLNLRT 337

Query: 325 KE---KQLKCVQESLEGCRNEFEEKENELISVEKLIDKCSEELELKKKHLCVIENSAAEL 381
            +   +++  +Q      + +     +    +E  + +   E +     +  ++     L
Sbjct: 338 PDDLSRRIVVLQNEELQLKEKNGSISSSAKQLETTLQQLQLERQKAVSEILELKKKLEAL 397

Query: 382 SDECESNELELDLIQTMAIGYLKQLKE--KEKQFHSLKEALDERWQDLEIKERKFEERVK 439
                  +  L L+     G    L    KE    S+   L +R ++ E   +K +  + 
Sbjct: 398 KALVRRLQRRLTLVTKERDGLRAILNSYDKELTETSVSGQLMKRLEEAEDLVQKVQSHLA 457

Query: 440 EFELREKEIESIRKAVEDRSKNLE-----LKEKKLSNNLHLQVKIEQPESLK 486
           + E +  E+E      +DR+  LE     LKE+ +SN   L    E   +L+
Sbjct: 458 KMENQLSELEEDVGQQKDRNNTLETEIKLLKEQLVSNERLLSFVKEATNALR 509

This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated. Length = 722

>gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

 Score = 44.7 bits (106), Expect = 2e-04
 Identities = 37/207 (17%), Positives = 78/207 (37%), Gaps = 21/207 (10%)

Query: 179 EKDLRKIRSSIEECEKELVMKEKHASSLQSLIEDYAEELESKEKLYDEIKKSIIQCETKL 238
           +K L++I+  I   EK++  ++   + L+  ++    E+ S       ++  +I+    L
Sbjct: 37  DKQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIAS-------LEAQLIETADDL 89

Query: 239 DCKKKELELTQTSIIELSLELHLEEEKL-ESLQRIVRLRENE----LDSKEEKLD----- 288
              +K++      +  L ++   +  +L E L  + R   N     L S E+        
Sbjct: 90  KKLRKQIADLNARLNALEVQEREQRRRLAEQLAALQRSGRNPPPALLVSPEDAQRSVRLA 149

Query: 289 ----AMKEEMKKYFNDIELKEREFNGIRKCIEKRSQELTLKEKQLKCVQESLEGCRNEFE 344
               A+     +  + ++   ++   +R  I     ELT    + +  Q  L     E +
Sbjct: 150 IYYGALNPARAERIDALKATLKQLAAVRAEIAAEQAELTTLLSEQRAQQAKLAQLLEERK 209

Query: 345 EKENELISVEKLIDKCSEELELKKKHL 371
           +   +L S      K  EEL   +  L
Sbjct: 210 KTLAQLNSELSADQKKLEELRANESRL 236

Length = 420

>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional

 Score = 44.4 bits (106), Expect = 3e-04
 Identities = 31/113 (27%), Positives = 59/113 (52%), Gaps = 8/113 (7%)

Query: 218 ESKEKLYDEIKKSIIQCETKLDCKKKELELTQTSIIELSLELHLEEEKLESLQRIVRLRE 277
           E+K K  +E  K I++     + KK+   + + +++E   E+H    + E   + +R R 
Sbjct: 30  EAKIKEAEEEAKRILE-----EAKKEAEAIKKEALLEAKEEIHKLRNEFE---KELRERR 81

Query: 278 NELDSKEEKLDAMKEEMKKYFNDIELKEREFNGIRKCIEKRSQELTLKEKQLK 330
           NEL   E++L   +E + +    +E +E E     K +E++ QEL  KE++L+
Sbjct: 82  NELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELE 134

Length = 520

>gnl|CDD|218636 pfam05557, MAD, Mitotic checkpoint protein

 Score = 44.1 bits (104), Expect = 4e-04
 Identities = 85/456 (18%), Positives = 183/456 (40%), Gaps = 56/456 (12%)

Query: 44  DLEEHLDISMKSLEKQSNDADSKIRLLDQRAKEIESK--ESDLVLA---ERRIKECNFEL 98
           D    L++ +K+LE+    A+++    ++ AK ++ K     L L    E ++KE    +
Sbjct: 107 DRNLELEVRLKALEELEKKAENEAAEAEEEAKLLKDKLDAESLKLQNEKEDQLKEAKESI 166

Query: 99  ACKEKQLELVRKRIGECECELQLKEGELNLVKKSVEEWLEKL---DLKMKEVGLVEKSND 155
           +  +  L  ++ R    + EL+L E EL  +++ +EE  ++L   + K++ +   + S+ 
Sbjct: 167 SRIKNDLSEMQCRAQNADTELKLLESELEELREQLEECQKELAEAEKKLQSLTSEQASSA 226

Query: 156 KSLVDQRRLENLIKDFCEQIELKEKDLRKIRSSIEECEKELVMKEKHASSLQSLIEDYA- 214
            + V  + LE  +K + +  E+  K +++    I E E+EL    +    L+S+ ED   
Sbjct: 227 DNSVKIKHLEEELKRYEQDAEV-VKSMKEQLLQIPELERELAALREENRKLRSMKEDNEL 285

Query: 215 -----EELESKEKLYDEIKKSIIQCETKLDCKKKELE----LTQTSIIELSLELHLEEEK 265
                E+L+S+ + ++++++ +   E + +  + EL+    L Q   + L     L    
Sbjct: 286 LKEELEDLQSRLERFEKMREKLADLELEKEKLENELKSWKSLLQDIGLNLRTPDDLSRRI 345

Query: 266 LESLQRIVRLRE--NELDSK----EEKLDAMKEEMKKY---FNDIELKEREFNGIRKCIE 316
           +      ++L+E    + S     E  L  ++ E +K      +++ K      + + ++
Sbjct: 346 VVLQNEELQLKEKNGSISSSAKQLETTLQQLQLERQKAVSEILELKKKLEALKALVRRLQ 405

Query: 317 KRSQELTLKEKQLKCVQESLEGCRNEFEEK---ENELISVEKLIDKCSEELELKKKHLCV 373
           +R   +T +   L+ +  S +    E          L   E L+ K    L   +  L  
Sbjct: 406 RRLTLVTKERDGLRAILNSYDKELTETSVSGQLMKRLEEAEDLVQKVQSHLAKMENQLSE 465

Query: 374 IENSAAELSDECESNELELDLIQTMAIGYLKQLKEKEKQFHSLKEALDERWQDLEIKERK 433
           +E    +  D   +            I  LK+     ++  S  +               
Sbjct: 466 LEEDVGQQKDRNNT--------LETEIKLLKEQLVSNERLLSFVK--------------- 502

Query: 434 FEERVKEFELREKEIESIRKAVEDRSKNLELKEKKL 469
             E      L+ + +E  R  +      LE+K + L
Sbjct: 503 --EATNALRLKIETLERERDRLRQEKSLLEMKLEHL 536

This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated. Length = 722

>gnl|CDD|188306 TIGR03319, RNase_Y, ribonuclease Y

 Score = 44.1 bits (105), Expect = 4e-04
 Identities = 38/136 (27%), Positives = 66/136 (48%), Gaps = 8/136 (5%)

Query: 281 DSKEEKLDAMKEEMKKYFNDIELKEREFNGIRKCIEKRSQELTLKEKQLKCVQESLEGCR 340
             K+E L   KEE+ K   ++E   RE    R  +++  + L  +E+ L    ESL+   
Sbjct: 47  TLKKEALLEAKEEVHKLRAELE---RELKERRNELQRLERRLLQREETLDRKMESLDKKE 103

Query: 341 NEFEEKENELISVEKLIDKCSEELE-LKKKHLCVIENSAAELSDECES---NELELDLIQ 396
              E+KE EL + EK +D+  EELE L  +    +E  +    +E +     E+E +   
Sbjct: 104 ENLEKKEKELSNKEKNLDEKEEELEELIAEQREELERISGLTQEEAKEILLEEVEEEARH 163

Query: 397 TMAIGYLKQLKEKEKQ 412
             A   +K+++E+ K+
Sbjct: 164 EAAK-LIKEIEEEAKE 178

Members of this family are RNase Y, an endoribonuclease. The member from Bacillus subtilis, YmdA, has been shown to be involved in turnover of yitJ riboswitch [Transcription, Degradation of RNA]. Length = 514

>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain

 Score = 43.8 bits (103), Expect = 5e-04
 Identities = 91/514 (17%), Positives = 179/514 (34%), Gaps = 20/514 (3%)

Query: 8   KEELRLAESKKEILRRSYDLAHAQANSVLNFTVQWKDLEEHLD--ISMKSLEKQSNDADS 65
            E L       E L+        QA   L +    + LE   +  + +  L+      D 
Sbjct: 183 TENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEENLLYLDYLKLNEERIDL 242

Query: 66  KIRLLDQRAKEIESKESDLVLAERRIKECNFELACKEKQLELVRKRIGECECELQLKEGE 125
              LL    +EIES + +L   E  + +   E   +EK+ +L  + +     E +  + E
Sbjct: 243 LQELLRDEQEEIESSKQELEKEEEILAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSE 302

Query: 126 LNLVKKSVEEWLEKLDLKMKEVGLVEKSNDKSLVDQRRLENLIKDFCEQIELKEKDLRKI 185
           L  +++   +  EKL    KE+  +EK   K   +   LE            KE    +I
Sbjct: 303 LLKLERRKVDDEEKLKESEKELKKLEKELKKEKEEIEELE------------KELKELEI 350

Query: 186 RSSIEECEKELVMKEKHASSLQSLIEDYAEELESKEKLYDEIKKSIIQCETKLDCKKKEL 245
           +   EE E+E  +++      Q   E  A     K+   + +  +    E +L+ K +E 
Sbjct: 351 KREAEEEEEEQ-LEKLQEKLEQLEEELLA----KKKLESERLSSAAKLKEEELELKNEEE 405

Query: 246 ELTQTSIIELSLELHLEEEKLESLQRIVRLRENELDSKEEKLDAMKEEMKKYFNDIELKE 305
           +  +  +     E  L +E+ +   +IV   E  L++K+ KL   KEE++K    +   +
Sbjct: 406 KEAKLLLELSEQEEDLLKEEKKEELKIVEELEESLETKQGKLTEEKEELEKQALKLLKDK 465

Query: 306 REFNGIRKCIEKRSQELTLKEKQLKCVQESLEGCRNEFEEKENELISVEKLIDKCSEELE 365
            E       + K ++ + L E+    +        ++ E K  E ++V   + K    L 
Sbjct: 466 LELKKSED-LLKETKLVKLLEQLELLLLRQKLEEASQKESKAREGLAVLLALIKDGVGLR 524

Query: 366 LKKKHLCVIENSAAELSDECESNELELDLIQTMAIGYLKQLKEKEKQFHSLKEALDERWQ 425
           +        +   A  + +   +   +  +  +A    ++ K           A      
Sbjct: 525 IISAAGRGGDLGVAVANYKVAISVAVIVEVSAVADEVDERQKLVRALTELPLPARTFVLL 584

Query: 426 DLEIKERKFEERVKEFELREKEIESIRKAVEDRSKNLELKEKKLSNNLHLQVKIEQPESL 485
           D  +K       V E +      +  +  +E    +   K  +         K+ +    
Sbjct: 585 DPLLKLPLKSIAVLEIDPALNLAQLNKATLEADEDDKRAKVVEGILKDTELTKLLESAKA 644

Query: 486 KGNEGTKQLSLQSCTMITGKNLQLLLNQHLQKHD 519
           K +   K +SL+       +    L     +   
Sbjct: 645 KESGLRKGVSLEEGLAEKSELKASLSELTKELLA 678

This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination. Length = 1162

>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional

 Score = 43.6 bits (104), Expect = 5e-04
 Identities = 42/142 (29%), Positives = 73/142 (51%), Gaps = 29/142 (20%)

Query: 173 EQIELK---EKDLRKIRSSIEECEKELVMKEKHASSLQSLIEDYAEELESKEKLYDEIKK 229
           E  +L+   EK+LR+ R+ +++ EK L+ KE++      L+E   EELE KEK  ++ ++
Sbjct: 65  EIHKLRNEFEKELRERRNELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQ 124

Query: 230 SIIQCETKLDCKKKELELTQTSIIELSLELHLEEEKLESLQRIVRLRENELDSKEEKLDA 289
            + +       K++ELE              L EE+L+ L+RI  L   E  +KE  L+ 
Sbjct: 125 ELEK-------KEEELE-------------ELIEEQLQELERISGLTAEE--AKEILLEK 162

Query: 290 MKEEMK----KYFNDIELKERE 307
           ++EE +        +IE + +E
Sbjct: 163 VEEEARHEAAVLIKEIEEEAKE 184

Length = 520

>gnl|CDD|129694 TIGR00606, rad50, rad50

 Score = 43.5 bits (102), Expect = 6e-04
 Identities = 112/556 (20%), Positives = 216/556 (38%), Gaps = 83/556 (14%)

Query: 12  RLAESKKEILRRSYDLAHAQANSVLNFTVQWKDLEEHLDISMKSLEKQSNDADSKIRLLD 71
           R+ E  +E+ +   +L+ A+ NS          L E L   +KSL+ +  D D K+R LD
Sbjct: 472 RILELDQELRKAERELSKAEKNS----------LTETLKKEVKSLQNEKADLDRKLRKLD 521

Query: 72  QRAKEIESKESDLVLAERRIKECNFELACKEKQLELVRKRIGECECELQLKEGELNLVKK 131
           Q  +++    +     E   K+       K  + E +RK       EL    G     KK
Sbjct: 522 QEMEQLNHHTTTRTQMEMLTKD-------KMDKDEQIRKIKSRHSDELTSLLGYFPN-KK 573

Query: 132 SVEEWLEKL--DLKMKEVGL--VEKSNDKSLVDQRRLENLIKDFCEQI------------ 175
            +E+WL     ++      L  + K       ++  + N ++   EQ+            
Sbjct: 574 QLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLFDVCG 633

Query: 176 -ELKEKDLRKIRSSIEECEKELVMKEKHASSLQSLIEDYAEELESKEKLYD-------EI 227
            + +E DL +++  IE+  K+  M     +     I    +E +S   +         E+
Sbjct: 634 SQDEESDLERLKEEIEKSSKQRAMLAGATAVYSQFITQLTDENQSCCPVCQRVFQTEAEL 693

Query: 228 KKSIIQCETKLDCKKKELELTQTSIIELSLELHLEEEKLESLQRIVRLRENELDSKEEKL 287
           ++ I   ++KL     +L+ T++ + +               Q I+ L+E E+     KL
Sbjct: 694 QEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKL 753

Query: 288 DAMKEEMKKYFNDIELKEREFNGIRK-------------CIEKRSQELTLKEKQLKCVQE 334
             +  ++++  NDIE +E     I                +E+   EL   E+++     
Sbjct: 754 QKVNRDIQRLKNDIEEQETLLGTIMPEEESAKVCLTDVTIMERFQMELKDVERKIAQQAA 813

Query: 335 SLEGC---------RNEFEEKENELISVEKLID---KCSEELELKKKHLCVIENSAAELS 382
            L+G            E +EK++EL +V   I+   K  ++ + + +HL          +
Sbjct: 814 KLQGSDLDRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHL-------KSKT 866

Query: 383 DECESNELELDLIQTMAIGYLKQLKEKEKQFHSLKEAL-DERWQDLEIKERKFEERVKEF 441
           +E +S +L++         + +QL E   +  SL   + D + QD  ++    +++ ++ 
Sbjct: 867 NELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKE 926

Query: 442 ELREKEIESIRKAVEDRSKNLELKEKKLSNNLHLQVKIEQPESLKGNEGTKQLSLQSCTM 501
           EL   +  S +KA       +   ++K+ N       IE     K  +G      Q  T 
Sbjct: 927 ELISSKETSNKKA----QDKVNDIKEKVKNIHGYMKDIEN----KIQDGKDDYLKQKETE 978

Query: 502 ITGKNLQLLLNQHLQK 517
           +   N QL   +  Q+
Sbjct: 979 LNTVNAQLEECEKHQE 994

All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). Length = 1311

>gnl|CDD|221952 pfam13166, AAA_13, AAA domain

 Score = 43.5 bits (103), Expect = 7e-04
 Identities = 78/411 (18%), Positives = 168/411 (40%), Gaps = 60/411 (14%)

Query: 75  KEIESKESDLVLAERRIKECNFELACKEKQLE----LVRKRIGECECELQLKEGELNLVK 130
            +IE  + +L   E +I++   E+  KE++LE        +  +   +         L  
Sbjct: 95  AQIEELKKELKKLEEKIEQLEAEIEKKEEELEKAKNKFLDKAWKKLAKKYDSNLSEALKG 154

Query: 131 KSVEEWLEKLDLKMKEVGLVEKSNDKSLVDQRRLENLIKDFCEQIELKEKDLRKIRSSIE 190
            + ++  ++  LK  +  ++  S+  SL + +     +             L       +
Sbjct: 155 LNYKKNFKEKLLKELKSVILNASSLLSLEELKAKIKTLFS--SNKPELAL-LTLSVIDFD 211

Query: 191 ECEKELVMKEKHASSLQSLIEDYAEELESKE------KLYDEIKKSIIQCETKLDCKKKE 244
           E E+  ++++    S    I +    L + +      + ++E       C     C++  
Sbjct: 212 EIEQAEILEKSIIGSSDVPISELINNLGNSDWVKEGLEYHEEGD----TCPF---CQQ-- 262

Query: 245 LELTQTSIIELSLELHLEEEKLESLQRIVRLRENELDSKEEKLDAMKEEMKKYFNDIELK 304
             +T+    E  LE H +EE  E ++++    E  +D  E  ++   EE++   +     
Sbjct: 263 -TITEERKAE--LEAHFDEEYQELIEQL----EELIDKYESHIEKALEELESILDT---- 311

Query: 305 EREFNGIRKCIEKRSQELTLKEKQLKCVQESLEGCRNEFEEKEN-----ELISVEKLIDK 359
           E+E +  +  +E+    L   E+ L+   + LE      E+ ++     EL S+  LI+ 
Sbjct: 312 EKENSEFKLDVEELKALLEALEEILEKNLQKLE------EKLKDPSTSIELESITDLIES 365

Query: 360 CSEEL----ELKKKHLCVIENSAAELSDECESNELELDLIQTMAI---GYLKQLKEKEKQ 412
            ++ +    EL ++H   I+N   E +      +L L L+  +      Y K+ K  EK 
Sbjct: 366 INDIIDAINELIREHNEKIDNLKKEKNKAK--KKLWLHLVAELKEDIDAYQKEKKGLEKA 423

Query: 413 FHSLKEALDERWQDLEIKERKFEERVKEFELREKEIESIRKAVEDRSKNLE 463
            +SL++ +      LE + +  E+ +KE    EK++ +I    ++ +K L+
Sbjct: 424 INSLEKEIK----QLEAEIKALEKEIKEL---EKQLTNIEPTADEINKLLK 467

This family of domains contain a P-loop motif that is characteristic of the AAA superfamily. Many of the proteins in this family are conjugative transfer proteins. This family includes the PrrC protein that is thought to be the active component of the anticodon nuclease. Length = 713

>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional

 Score = 42.7 bits (101), Expect = 0.001
 Identities = 57/307 (18%), Positives = 117/307 (38%), Gaps = 41/307 (13%)

Query: 173 EQIELKEKDLRKIRSSIEECEKELVMKEKHASSLQSLIEDYAEELESKEKLYDEIKKSII 232
           E++E  E ++  +R +I E E+E               E+ AEE+    +  +E+     
Sbjct: 251 EELETLEAEIEDLRETIAETERER--------------EELAEEVRDLRERLEEL----- 291

Query: 233 QCETKLDCKKKELELTQTSIIELSLELH-LEEEKLESLQRIVRLR------ENELDSKEE 285
             E + D    E  L       +      LE+   E   R+   R        E +S  E
Sbjct: 292 --EEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLRE 349

Query: 286 KLDAMKEEMKKYFNDIELKEREFNGIRKCIEKRSQELTLKEKQLKCVQESLEGCRNEFEE 345
             D ++E  ++   +    E E    R+ +E R +E+   E++++ ++E       +   
Sbjct: 350 DADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGN 409

Query: 346 KENELISVEKLIDKCSEELELKKKHLCVIENS---AAELSDECESNELELDLIQTMAIGY 402
            E+ L  + +  D+  E     +  L         A  L +  +  E    +  +    +
Sbjct: 410 AEDFLEELREERDELREREAELEATLRTARERVEEAEALLEAGKCPECGQPVEGS---PH 466

Query: 403 LKQLKEKEKQFHSLKEALDERWQDLEIKERKFE---ERVKEFELREKEIESIRKAVEDRS 459
           ++ ++E  ++     E L+   +DLE +  + E   ER ++    E  IE + +  ED  
Sbjct: 467 VETIEEDRER----VEELEAELEDLEEEVEEVEERLERAEDLVEAEDRIERLEERREDLE 522

Query: 460 KNLELKE 466
           + +  + 
Sbjct: 523 ELIAERR 529

Length = 880

>gnl|CDD|223683 COG0610, COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]

 Score = 43.2 bits (102), Expect = 0.001
 Identities = 57/325 (17%), Positives = 114/325 (35%), Gaps = 44/325 (13%)

Query: 132 SVEEWLEKLDLKMKEVGLVEKSNDKSLVDQRRLENLIKDFCEQIELKEKDLRKIRSSIEE 191
           ++EE +EKL+  + E     +           L +   +   ++E   K L K       
Sbjct: 678 AIEELVEKLEDVLNEFKEQSEDIGYLEDAGELLRDFAPELEIKVERGNKILAK------- 730

Query: 192 CEKELVMKEKHASSLQSLIEDYAEELESKEKLYDEIKKSIIQCETKLDCKKKELELTQTS 251
                    K  ++L+ L E      E  + L D +K  + +     D + K L+L    
Sbjct: 731 ---LFGRFLKAFNALKKLYEFAYTLEEEIQYLEDLLKARLEK-----DYQSKYLDLID-- 780

Query: 252 IIELSLELHLEEEKLESLQRIVRLRENELDSKEEKLDAMKEEMKKYFNDIELKEREFNGI 311
            +  + E+  +E K   L  I    E EL  K+E      + + +       K   +  +
Sbjct: 781 NLNDAREIKDKESKAIDLDDIDF--ELELIGKQEIN---IDYILELLQTFNDKNGAYESL 835

Query: 312 RKCIEKRSQELTLKEKQLKCVQESLEGCRNEFEEKENELISVEKLIDKCSEELELKKKHL 371
           ++ IE+  +E     +Q K + E L    N++  K+ +           + E   +   L
Sbjct: 836 KELIERIIKEWIEDLRQKKKLIERLIEAINQYRAKKLD-----------TAEKLEELYIL 884

Query: 372 CVIENSAAELSDECESNELELDLIQTMAIGYLKQLKEKEKQFHSLKEALDERWQDLEIKE 431
              E    + ++E   NE EL     +    L   K  E     ++         L  ++
Sbjct: 885 AKKEEEFKQFAEEEGLNEEELAFYDDL---ALNGGKLPENGTELVE--------KLAKEK 933

Query: 432 RKFEERVKEFELREKEIESIRKAVE 456
              E+   +++ +E+    ++    
Sbjct: 934 SLREKNKDDWKAKEEVEAKLKAFFR 958

Length = 962

>gnl|CDD|223542 COG0466, Lon, ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]

 Score = 41.4 bits (98), Expect = 0.003
 Identities = 66/269 (24%), Positives = 118/269 (43%), Gaps = 53/269 (19%)

Query: 186 RSSIEECEKELVMKEKHASSLQSLIEDYAEELESKEKLYDEIKKSIIQCETKLDCKKKEL 245
           R  I +   E   +E   + ++ L ++  +E    E L   I     +   KL+ K    
Sbjct: 97  RVRISKLSDE---EEFFEAEIELLPDEPIDEEREIEALVRSILSEFEEYA-KLNKKIPPE 152

Query: 246 ELTQTSIIELSLEL------HLEEEKLESLQRIVRLRENELDSKEEK-LDAMKEEMKKYF 298
           EL   + I+   +L      HL   KLE  Q I  L   ++  + EK LD +++E+    
Sbjct: 153 ELQSLNSIDDPGKLADTIAAHLPL-KLEEKQEI--LETLDVKERLEKLLDLLEKEI---- 205

Query: 299 NDIELKEREFNGIRKCIEKRSQELTLKEKQLKCVQESLEGCRNEFEEKENELISVEKLID 358
           + ++L++R    +++ +EK  +E  L+E QLK +Q+ L     E ++ ++E+  + + I+
Sbjct: 206 DLLQLEKRIRKKVKEQMEKSQREYYLRE-QLKAIQKEL----GEDDDDKDEVEELREKIE 260

Query: 359 KCSEELELKKK------HLCVIENSAAELSDECESNELELDLIQTMAIGYLKQL-----K 407
           K     E K+K       L  +   +AE +           +I+     YL  L      
Sbjct: 261 KLKLPKEAKEKAEKELKKLETMSPMSAEAT-----------VIRN----YLDWLLDLPWG 305

Query: 408 EKEKQFHSLKEA---LDERWQDLE-IKER 432
           ++ K    LK+A   LD+    LE +KER
Sbjct: 306 KRSKDKLDLKKAEKILDKDHYGLEKVKER 334

Length = 782

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 40.9 bits (96), Expect = 0.004
 Identities = 59/258 (22%), Positives = 112/258 (43%), Gaps = 16/258 (6%)

Query: 43  KDLEEHLDISMKSLEKQSNDADSKIRLLDQRAKEIESKESDLVLAERR---IKECNFELA 99
           ++L E L+      + Q      ++R L+ R +E++    +L L   R   ++E    L 
Sbjct: 539 ENLLEELE--ELKEKLQLQQLKEELRQLEDRLQELKELLEELRLLRTRKEELEELRERLK 596

Query: 100 CKEKQLELVRKRIGECE-----CELQLKEGELNLVKKSVEEWLEKLDLKM-----KEVGL 149
             +K+L+ + +R+ + E      EL   E EL   ++ +E  LEKL+L+       +  L
Sbjct: 597 ELKKKLKELEERLSQLEELLQSLELSEAENELEEAEEELESELEKLNLQAELEELLQAAL 656

Query: 150 VEKSND-KSLVDQRRLENLIKDFCEQIELKEKDLRKIRSSIEECEKELVMKEKHASSLQS 208
            E     + L  + R E    +  EQ+E K ++L ++   +E+  +EL    K    ++ 
Sbjct: 657 EELEEKVEELEAEIRRELQRIENEEQLEEKLEELEQLEEELEQLREELEELLKKLGEIEQ 716

Query: 209 LIEDYAEELESKEKLYDEIKKSIIQCETKLDCKKKELELTQTSIIELSLELHLEEEKLES 268
           LIE+        E+L  E++K     E   + ++K  +    + I  +L   +E E  E 
Sbjct: 717 LIEELESRKAELEELKKELEKLEKALELLEELREKLGKAGLRADILRNLLAQIEAEANEI 776

Query: 269 LQRIVRLRENELDSKEEK 286
           L ++   R +       K
Sbjct: 777 LSKLSLNRYDLRRLTIRK 794

Length = 908

>gnl|CDD|223683 COG0610, COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]

 Score = 40.9 bits (96), Expect = 0.004
 Identities = 44/271 (16%), Positives = 95/271 (35%), Gaps = 14/271 (5%)

Query: 43  KDLEEHLDISMKSLEKQSNDADSKIRLLDQRAKEIESKESDLVLAERRIKECNFELACKE 102
           K+  E +     + E   + A      +++  K +       + A   +K          
Sbjct: 694 KEQSEDIGYLEDAGELLRDFAPELEIKVERGNKILAKLFGRFLKAFNALK--KLYEFAYT 751

Query: 103 KQLELVRKRIGECECELQL-KEGELNLVKKS--VEEWLEKLDLKMKEVGLVE--KSNDKS 157
            + E+            +  +   L+L+       E  +K    +    +    +   K 
Sbjct: 752 LEEEIQYLEDLLKARLEKDYQSKYLDLIDNLNDAREIKDKESKAIDLDDIDFELELIGKQ 811

Query: 158 LVDQRRLENLIKDFCEQIELKEKDLRKIRSSIEECEKELVMKEKHASSLQSLIEDYAE-E 216
            ++   +  L++ F ++    E     I   I+E  ++L  K+K    L   I  Y   +
Sbjct: 812 EINIDYILELLQTFNDKNGAYESLKELIERIIKEWIEDLRQKKKLIERLIEAINQYRAKK 871

Query: 217 LESKEKLYDEIKKSIIQCETKLDCKKKEL-ELTQTSIIELSLELH----LEEEKLESLQR 271
           L++ EKL +    +  + E K   +++ L E       +L+L          E +E L +
Sbjct: 872 LDTAEKLEELYILAKKEEEFKQFAEEEGLNEEELAFYDDLALNGGKLPENGTELVEKLAK 931

Query: 272 IVRLRENELDSKEEKLDAMKEEMKKYFNDIE 302
              LRE   D   +  + ++ ++K +F    
Sbjct: 932 EKSLREKNKDDW-KAKEEVEAKLKAFFRRFI 961

Length = 962

>gnl|CDD|227355 COG5022, COG5022, Myosin heavy chain [Cytoskeleton]

 Score = 40.8 bits (96), Expect = 0.004
 Identities = 63/309 (20%), Positives = 109/309 (35%), Gaps = 24/309 (7%)

Query: 175  IELKEKDLRKIRSSIEECEKELVMKEKHASSLQSLIEDYAEELESKEKLYDEIKKS---- 230
            +  KE    +    +E  E++L   +    S+ SL           E    E+KKS    
Sbjct: 863  LLKKETIYLQSAQRVELAERQLQELKIDVKSISSL----KLVNLELESEIIELKKSLSSD 918

Query: 231  -IIQCETKLDCKKKELELTQTSIIELSLELHLEEEKLESLQRIVRLRENELDSKEEKLDA 289
             I   E K +   +  +L     +E    +   +              N+L   E KL  
Sbjct: 919  LIENLEFKTELIARLKKLLNNIDLEEGPSIEYVKLP----------ELNKLHEVESKLKE 968

Query: 290  MKEEMKKYFNDIELKEREFNGIRKCIEKRSQELTLKEKQLKCVQESLEGCRNEFEEKENE 349
              EE +       +  RE N     ++   +EL    KQ   +QES +  + E   +  E
Sbjct: 969  TSEEYEDLLKKSTILVREGNKANSELKNFKKELAELSKQYGALQESTKQLK-ELPVEVAE 1027

Query: 350  LISVEKLIDKCSEELELKKKHLCVIENSAAELSDECESNELELDLIQTMAIGYLKQLKEK 409
            L S  K+I   S EL + K    +      E + + ++    L L +  ++   KQL + 
Sbjct: 1028 LQSASKIISSESTELSILKPLQKLKGLLLLENN-QLQARYKALKLRRENSLLDDKQLYQL 1086

Query: 410  EKQFHSLKE--ALDERWQDLE-IKERKFEERVKEFELREKEIESIRKAVEDRSKNLELKE 466
            E   + LK     D    +   +K     + +    ++   ++ I K +      LE   
Sbjct: 1087 ESTENLLKTINVKDLEVTNRNLVKPANVLQFIVAQMIKLNLLQEISKFLSQLVNTLEPVF 1146

Query: 467  KKLSNNLHL 475
            +KLS     
Sbjct: 1147 QKLSVLQLE 1155

Length = 1463

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	1060
PF07899	290	Frigida: Frigida-like protein; InterPro: IPR012474	100.0
PF07899	290	Frigida: Frigida-like protein; InterPro: IPR012474	99.72
PRK02224	880	chromosome segregation protein; Provisional	99.16
PRK02224	880	chromosome segregation protein; Provisional	99.06
KOG0161	1930	consensus Myosin class II heavy chain [Cytoskeleto	98.74
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	98.73
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	98.72
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	98.66
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	98.65
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	98.64
KOG0161	1930	consensus Myosin class II heavy chain [Cytoskeleto	98.63
PRK03918	880	chromosome segregation protein; Provisional	98.57
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	98.57
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	98.44
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	98.4
KOG0995	581	consensus Centromere-associated protein HEC1 [Cell	98.22
KOG0933	1174	consensus Structural maintenance of chromosome pro	98.14
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	97.93
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	97.75
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	97.69
KOG0996	1293	consensus Structural maintenance of chromosome pro	97.61
KOG0971	1243	consensus Microtubule-associated protein dynactin	97.51
KOG4674	1822	consensus Uncharacterized conserved coiled-coil pr	97.47
KOG4674	1822	consensus Uncharacterized conserved coiled-coil pr	97.44
KOG0933	1174	consensus Structural maintenance of chromosome pro	97.44
KOG0995	581	consensus Centromere-associated protein HEC1 [Cell	97.38
KOG0976	1265	consensus Rho/Rac1-interacting serine/threonine ki	97.36
COG0419	908	SbcC ATPase involved in DNA repair [DNA replicatio	97.3
KOG0250	1074	consensus DNA repair protein RAD18 (SMC family pro	97.21
KOG1029	1118	consensus Endocytic adaptor protein intersectin [S	97.19
KOG0962	1294	consensus DNA repair protein RAD50, ABC-type ATPas	97.15
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	97.14
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	97.05
PHA02562	562	46 endonuclease subunit; Provisional	97.01
PRK11637	428	AmiB activator; Provisional	97.0
KOG0250	1074	consensus DNA repair protein RAD18 (SMC family pro	96.9
COG0419	908	SbcC ATPase involved in DNA repair [DNA replicatio	96.87
PHA02562	562	46 endonuclease subunit; Provisional	96.76
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	96.66
KOG0964	1200	consensus Structural maintenance of chromosome pro	96.53
KOG0996	1293	consensus Structural maintenance of chromosome pro	96.46
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	96.45
PF05483	786	SCP-1: Synaptonemal complex protein 1 (SCP-1); Int	96.38
PF05667	594	DUF812: Protein of unknown function (DUF812); Inte	96.34
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	96.25
PRK04863	1486	mukB cell division protein MukB; Provisional	96.01
KOG0018	1141	consensus Structural maintenance of chromosome pro	95.83
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	95.81
PF05483	786	SCP-1: Synaptonemal complex protein 1 (SCP-1); Int	95.79
KOG1029	1118	consensus Endocytic adaptor protein intersectin [S	95.46
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	95.2
KOG0976	1265	consensus Rho/Rac1-interacting serine/threonine ki	95.08
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	94.84
PRK04778	569	septation ring formation regulator EzrA; Provision	94.79
KOG0964	1200	consensus Structural maintenance of chromosome pro	94.78
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	94.76
PF00038	312	Filament: Intermediate filament protein; InterPro:	94.72
COG4942	420	Membrane-bound metallopeptidase [Cell division and	94.52
PRK04863	1486	mukB cell division protein MukB; Provisional	94.51
KOG4673	961	consensus Transcription factor TMF, TATA element m	94.4
KOG4673	961	consensus Transcription factor TMF, TATA element m	94.37
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	94.02
KOG0971	1243	consensus Microtubule-associated protein dynactin	93.82
COG5185	622	HEC1 Protein involved in chromosome segregation, i	93.26
PF05701	522	WEMBL: Weak chloroplast movement under blue light;	93.05
PF05701	522	WEMBL: Weak chloroplast movement under blue light;	92.84
KOG0962	1294	consensus DNA repair protein RAD50, ABC-type ATPas	92.67
PF15619	194	Lebercilin: Ciliary protein causing Leber congenit	92.63
TIGR03185	650	DNA_S_dndD DNA sulfur modification protein DndD. T	92.52
KOG0980	980	consensus Actin-binding protein SLA2/Huntingtin-in	91.16
KOG0979	1072	consensus Structural maintenance of chromosome pro	91.13
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	90.78
PF06160	560	EzrA: Septation ring formation regulator, EzrA ; I	90.77
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	90.76
PF15254	861	CCDC14: Coiled-coil domain-containing protein 14	90.71
KOG0977	546	consensus Nuclear envelope protein lamin, intermed	90.29
TIGR03319	514	YmdA_YtgF conserved hypothetical protein YmdA/YtgF	90.28
COG1340	294	Uncharacterized archaeal coiled-coil protein [Func	90.16
PF10473	140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	89.66
KOG0979	1072	consensus Structural maintenance of chromosome pro	89.6
PF07035	167	Mic1: Colon cancer-associated protein Mic1-like; I	89.55
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	89.21
TIGR03319	514	YmdA_YtgF conserved hypothetical protein YmdA/YtgF	89.18
PF05557	722	MAD: Mitotic checkpoint protein; InterPro: IPR0086	88.86
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	88.81
COG2433	652	Uncharacterized conserved protein [Function unknow	88.31
PF05667	594	DUF812: Protein of unknown function (DUF812); Inte	88.05
COG4942	420	Membrane-bound metallopeptidase [Cell division and	88.04
PF01576	859	Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu	87.86
PRK12704	520	phosphodiesterase; Provisional	87.72
KOG0243	1041	consensus Kinesin-like protein [Cytoskeleton]	87.08
COG5185	622	HEC1 Protein involved in chromosome segregation, i	86.68
PF10186	302	Atg14: UV radiation resistance protein and autopha	86.61
KOG0018	1141	consensus Structural maintenance of chromosome pro	86.43
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	86.32
PF13851	201	GAS: Growth-arrest specific micro-tubule binding	85.3
TIGR03185	650	DNA_S_dndD DNA sulfur modification protein DndD. T	85.04
PF05622	713	HOOK: HOOK protein; InterPro: IPR008636 This famil	84.36
PRK00106	535	hypothetical protein; Provisional	84.35
PF04949	159	Transcrip_act: Transcriptional activator; InterPro	84.31
PF10186	302	Atg14: UV radiation resistance protein and autopha	83.6
PF10481	307	CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR0	82.95
PF13863	126	DUF4200: Domain of unknown function (DUF4200)	82.61
COG4372	499	Uncharacterized protein conserved in bacteria with	82.6
PRK04778	569	septation ring formation regulator EzrA; Provision	82.59
PLN03106	447	TCP2 Protein TCP2; Provisional	82.14
PF10473	140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	81.78
KOG0963	629	consensus Transcription factor/CCAAT displacement	81.49
PF05911	769	DUF869: Plant protein of unknown function (DUF869)	81.17
COG1340	294	Uncharacterized archaeal coiled-coil protein [Func	80.5
PF13851	201	GAS: Growth-arrest specific micro-tubule binding	80.25
PF10146	230	zf-C4H2: Zinc finger-containing protein ; InterPro	80.15
PRK09039	343	hypothetical protein; Validated	80.15

>PF07899 Frigida: Frigida-like protein; InterPro: IPR012474 This family is composed of plant proteins that are similar to FRIGIDA protein expressed by Arabidopsis thaliana (Mouse-ear cress) (Q9FDW0 from SWISSPROT)

Probab=100.00  E-value=1.7e-77  Score=650.45  Aligned_cols=279  Identities=42%  Similarity=0.687  Sum_probs=257.8

Q ss_pred             CcccchhhhhhhcccchhhHHHHHHHhhhhhhhhhhhHHHhhhhcCCchhhHHHhhhccCCCCCCCCCcccchhHhHhHh
Q 001522          488 NEGTKQLSLQSCTMITGKNLQLLLNQHLQKHDLVFGEISHTLTKACDPASLVLDAMEGFYPPHSREGDMEFDVSIIRRTC  567 (1060)
Q Consensus       488 ~~~~~~~~~~lc~~mDgkgL~~~i~e~~k~~~~ir~Ei~~AL~~asDPAklVLDaiegf~~~~~~~~d~e~~~~~~rrsC  567 (1060)
                      ...+++.+..+|++|||+||+.|+++|.++.+.+|+||+.||++|+|||+||||+|+|||++.++. +.+.+...+|++|
T Consensus         8 ~~~~~~~L~~lC~~MD~~gL~~fv~~~~k~~~~lr~Ev~~AL~~A~DPAkLVLdai~~f~~~~~~~-~~~~~~~~~r~~c   86 (290)
T PF07899_consen    8 EVKPRPELKSLCEKMDGKGLRKFVSENRKELASLREEVPAALRCAPDPAKLVLDAIEGFYPPGSKN-KKDSKLVDVRRAC   86 (290)
T ss_pred             CcchHHHHHHHHHHCCHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCChHHHHHHHHHcccCCcccc-ccCcchhhHHHHH
Confidence            446889999999999999999999999999999999999999999999999999999999998766 6677889999999


Q ss_pred             HHHHHHhhhcCCCCChhhHHHHHHHHHHHHHhhhhcccchhhHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHhhhhHHH
Q 001522          568 ILLLEQLSSVTPEINPQVRDEAMKVAGEWKKKMRVAEDNSLEVLGFLHLLAAYGLGPSFDGIELESLLDIVAQHRQTSKL  647 (1060)
Q Consensus       568 ilLLEqL~~isp~i~~~VkeeA~kLA~~WK~~~~~~~en~levLGFL~lla~ygL~s~FD~dEll~L~~~va~~~~ap~L  647 (1060)
                      |+|||+|+.++|.|+|+||++|+++|.+||++|.                                              
T Consensus        87 ilLLE~L~~~~~~is~~vke~A~~lA~~WK~~l~----------------------------------------------  120 (290)
T PF07899_consen   87 ILLLEQLMRISPEISPEVKEEAKKLAEEWKSKLD----------------------------------------------  120 (290)
T ss_pred             HHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHH----------------------------------------------
Confidence            9999999999999888888888888888888772                                              


Q ss_pred             HhhhhhhhhhhcccccCccchhhhhcccccCCCChhhHHHhhhcCCCchhhHHHHHHhhhhcCCCCCccchhhhHHHHHH
Q 001522          648 RQSLGFAEKAHGLQCSTTREARSCLSLLNKHDLGHNEVLQLLHLAPDPAMFVLDFIQHWKSQGTGFEEDNVKCCILVLEK  727 (1060)
Q Consensus       648 ~~~LG~~~k~~~~~cst~~~~~~~~~~l~~~~~~~~Ev~~AL~~ApDPAklVLdaV~~f~~~~~g~~~~~~~~CVLLLE~  727 (1060)
                                                                                                      
T Consensus       121 --------------------------------------------------------------------------------  120 (290)
T PF07899_consen  121 --------------------------------------------------------------------------------  120 (290)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhhcCCCChhHHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHhhhccccccChHHHHHHHHhhhcccchHHHHHHhCC
Q 001522          728 LKEVLPIMNPRVKGEAMKLAVEWKTKMGVGTLNSLEVLVFLQLLGTFELVASFNRVEIVELLWTISEHKQAPETCRALGF  807 (1060)
Q Consensus       728 L~~i~p~isp~vke~AkklA~~WK~ki~~~~~~slea~aFLqLLa~FGI~seFd~deL~~Lv~~ia~rkqapeLc~sLGL  807 (1060)
                                                 ++++.++++|+||||||++|||+++||.|||++||.+||+|+|||+||++|||
T Consensus       121 ---------------------------~~~~~~~lea~gFL~lla~fgi~s~Fd~del~~Lv~~va~~~~a~~L~~sLgl  173 (290)
T PF07899_consen  121 ---------------------------GVNNENSLEALGFLQLLAAFGIVSEFDEDELLKLVVSVARRKQAPELCRSLGL  173 (290)
T ss_pred             ---------------------------hcccCCCHHHHHHHHHHHHcCCccccCHHHHHHHHHHhcchHhhHHHHHHcCc
Confidence                                       23355688999999999999999999999999999999999999999999999


Q ss_pred             chhhhHHHHHHHhcCccchHHHHHHHhcccccCCCcHHHHHHHHHhhhhhh---hcCCCChHHHhHhhHHHHHHhHHHHH
Q 001522          808 TDIVANFVRNLIGRKKHIAAIRFICAFKLTDIAKPEAIFKQYLDDNISDIH---RKGNNSSDAKVKAMDFEVNALTFLIE  884 (1060)
Q Consensus       808 ~dkmpdiIq~LI~kGkqIeAVrFi~aFgL~dkFpPVpLLKsYL~daKka~~---~kg~nS~~aq~eA~~KEl~ALraVIK  884 (1060)
                      +++|||||++||++||||+||+|||+|||+|+||||||||+||+++|+++.   ++++++ .++++|+++|++||++|||
T Consensus       174 ~~k~~d~V~~LI~~g~~ieAv~fi~~f~L~dkfpPv~lLk~yl~~~k~~~~~~~~~~~~~-~a~~ea~~kel~aL~~vik  252 (290)
T PF07899_consen  174 SDKMPDIVEKLIKKGKQIEAVRFIYAFGLVDKFPPVPLLKSYLEDSKKAAKRIRKKGNSS-EAQNEANEKELAALKSVIK  252 (290)
T ss_pred             hhhhHHHHHHHHHCCCccchHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999998654   445445 9999999999999999999


Q ss_pred             HhhhcCCccccchHHHHHHHHHHHHhhhhccccCCCC
Q 001522          885 CFKENKLESSLLIENIKQRIVQLEMAKADCRRHSTPA  921 (1060)
Q Consensus       885 CIEehKLEse~p~~~LkkRI~qLeK~kaekKR~~~~~  921 (1060)
                      ||++||||++||+++|++||.||+++++++||+.+++
T Consensus       253 cIee~kLes~~~~~~l~kri~~Lek~~~~~kr~~~~~  289 (290)
T PF07899_consen  253 CIEEHKLESEFPLEPLQKRIEQLEKQKADRKRAAEAA  289 (290)
T ss_pred             HHHHhccccccChHHHHHHHHHHHHHHHHHhhccccc
Confidence            9999999999999999999999999999999877654

This protein is probably nuclear and is required for the regulation of flowering time in the late-flowering phenotype. It is known to increase RNA levels of flowering locus C. Allelic variation at the FRIGIDA locus is a major determinant of natural variation in flowering time [].

>PF07899 Frigida: Frigida-like protein; InterPro: IPR012474 This family is composed of plant proteins that are similar to FRIGIDA protein expressed by Arabidopsis thaliana (Mouse-ear cress) (Q9FDW0 from SWISSPROT)

Probab=99.72  E-value=6.2e-17  Score=177.56  Aligned_cols=171  Identities=27%  Similarity=0.373  Sum_probs=114.5

Q ss_pred             ChhhHHHhhhcCCCchhhHHHHHHhhhhcCCC-----CCccchhhhHHHHHHhhhhcCCCChhHHHHHHHHHHHHHhhcC
Q 001522          681 GHNEVLQLLHLAPDPAMFVLDFIQHWKSQGTG-----FEEDNVKCCILVLEKLKEVLPIMNPRVKGEAMKLAVEWKTKMG  755 (1060)
Q Consensus       681 ~~~Ev~~AL~~ApDPAklVLdaV~~f~~~~~g-----~~~~~~~~CVLLLE~L~~i~p~isp~vke~AkklA~~WK~ki~  755 (1060)
                      -++||++||++|||||+||||||++||+.+.+     ...+.+++||+|||+|+.++|.++|+|+++|+++|.+||+   
T Consensus        41 lr~Ev~~AL~~A~DPAkLVLdai~~f~~~~~~~~~~~~~~~~r~~cilLLE~L~~~~~~is~~vke~A~~lA~~WK~---  117 (290)
T PF07899_consen   41 LREEVPAALRCAPDPAKLVLDAIEGFYPPGSKNKKDSKLVDVRRACILLLEQLMRISPEISPEVKEEAKKLAEEWKS---  117 (290)
T ss_pred             HHHHHHHHHHcCCChHHHHHHHHHcccCCccccccCcchhhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHH---
Confidence            47899999999999999999999999986653     2335779999999999999999999999999999999999   


Q ss_pred             CCCCchHHHHHHHHHHhhhccccccChHHHHHHHHhhhcccchHHHHHHhCCch--hhhHHHHHHHhcCccchHHHHHHH
Q 001522          756 VGTLNSLEVLVFLQLLGTFELVASFNRVEIVELLWTISEHKQAPETCRALGFTD--IVANFVRNLIGRKKHIAAIRFICA  833 (1060)
Q Consensus       756 ~~~~~slea~aFLqLLa~FGI~seFd~deL~~Lv~~ia~rkqapeLc~sLGL~d--kmpdiIq~LI~kGkqIeAVrFi~a  833 (1060)
                           .++            -++.-+.-+...|+..+|          +-||..  .-.++...+..-.++=.|+.+...
T Consensus       118 -----~l~------------~~~~~~~lea~gFL~lla----------~fgi~s~Fd~del~~Lv~~va~~~~a~~L~~s  170 (290)
T PF07899_consen  118 -----KLD------------GVNNENSLEALGFLQLLA----------AFGIVSEFDEDELLKLVVSVARRKQAPELCRS  170 (290)
T ss_pred             -----HHH------------hcccCCCHHHHHHHHHHH----------HcCCccccCHHHHHHHHHHhcchHhhHHHHHH
Confidence                 111            222333344444444443          233332  223333444444444457777777


Q ss_pred             hcccccCCCcHHHHHHHHHhhhhhhhcCCCChHHHhHhhHHHHHHhHHHHHHhhhcCCccccchHHHHH-HHHHH
Q 001522          834 FKLTDIAKPEAIFKQYLDDNISDIHRKGNNSSDAKVKAMDFEVNALTFLIECFKENKLESSLLIENIKQ-RIVQL  907 (1060)
Q Consensus       834 FgL~dkFpPVpLLKsYL~daKka~~~kg~nS~~aq~eA~~KEl~ALraVIKCIEehKLEse~p~~~Lkk-RI~qL  907 (1060)
                      .||+++.|      ++|+..-+    +|            +.+.    .|++|=.++|...||+-+|-+ -|...
T Consensus       171 Lgl~~k~~------d~V~~LI~----~g------------~~ie----Av~fi~~f~L~dkfpPv~lLk~yl~~~  219 (290)
T PF07899_consen  171 LGLSDKMP------DIVEKLIK----KG------------KQIE----AVRFIYAFGLVDKFPPVPLLKSYLEDS  219 (290)
T ss_pred             cCchhhhH------HHHHHHHH----CC------------Cccc----hHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence            77777752      22222211    12            2222    345678899999999977544 44443

This protein is probably nuclear and is required for the regulation of flowering time in the late-flowering phenotype. It is known to increase RNA levels of flowering locus C. Allelic variation at the FRIGIDA locus is a major determinant of natural variation in flowering time [].

>PRK02224 chromosome segregation protein; Provisional

Probab=99.16  E-value=2.8e-05  Score=96.85  Aligned_cols=85  Identities=14%  Similarity=0.196  Sum_probs=42.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhh
Q 001522          162 RRLENLIKDFCEQIELKEKDLRKIRSSIEECEKELVMKEKHASSLQSLIEDYAEELESKEKLYDEIKKSIIQCETKLDCK  241 (1060)
Q Consensus       162 ~~~e~~~~~~~~ele~keke~~~~~k~Ie~~~kel~~Ke~~~~~~e~~ie~~~~ELE~Kek~~e~~~ke~e~~~k~l~~k  241 (1060)
                      ..++..+.++...+.....+|..+...++...+++...+..+..+...+....++++..+..+.....++...+.+++..
T Consensus       317 ~~l~~k~~el~~~l~~~~~~l~~~~~~~e~~~~~~~~le~~~~~l~~~~~~l~~~~~~~~~~l~~~~~~l~~l~~el~el  396 (880)
T PRK02224        317 EELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEEL  396 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445555555555555555555555444444554444555555555554444555555555555554444444444444


Q ss_pred             HHHHH
Q 001522          242 KKELE  246 (1060)
Q Consensus       242 ~kEl~  246 (1060)
                      ...+.
T Consensus       397 ~~~l~  401 (880)
T PRK02224        397 RERFG  401 (880)
T ss_pred             HHHHh
Confidence            33333

>PRK02224 chromosome segregation protein; Provisional

Probab=99.06  E-value=0.00012  Score=91.43  Aligned_cols=78  Identities=19%  Similarity=0.273  Sum_probs=36.1

Q ss_pred             hhheecchhchHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhHHhHHHHHhhhhh
Q 001522           35 VLNFTVQWKDLEEHLDISMKSLEKQSNDADSKIRLLDQRAKEIESKESDLVLAERRIKECNFELACKEKQLELVRKRIGE  114 (1060)
Q Consensus        35 ~l~~~lqw~~le~h~~s~~~~~~~~~~~~~~~~~~le~r~ke~e~ke~~~~~~~~~~ee~~~el~~Kek~l~~~r~~i~E  114 (1060)
                      +-.+.=+|..++.........+.    .+......++.+...++.-+.++..+..++.++...+.....++......+.+
T Consensus       215 l~el~~~i~~~~~~~~~l~~~l~----~l~~~~~el~~~~~~l~~l~~~~~~l~~~i~~~e~~~~~l~~~i~~~~~~~~~  290 (880)
T PRK02224        215 LAELDEEIERYEEQREQARETRD----EADEVLEEHEERREELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEE  290 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444455555555544433332    22233334444444444445555555555555555555444444444444444


Q ss_pred             hh
Q 001522          115 CE  116 (1060)
Q Consensus       115 c~  116 (1060)
                      +.
T Consensus       291 le  292 (880)
T PRK02224        291 LE  292 (880)
T ss_pred             HH
Confidence            43

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]

Probab=98.74  E-value=0.0042  Score=82.96  Aligned_cols=133  Identities=20%  Similarity=0.247  Sum_probs=67.0

Q ss_pred             HhhhhhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhHHhHHHHHhhhhhhhhhhhhhhhhhHhhHHHHHHHH
Q 001522           58 KQSNDADSKIRLLDQRAKEIESKESDLVLAERRIKECNFELACKEKQLELVRKRIGECECELQLKEGELNLVKKSVEEWL  137 (1060)
Q Consensus        58 ~~~~~~~~~~~~le~r~ke~e~ke~~~~~~~~~~ee~~~el~~Kek~l~~~r~~i~Ec~~El~~ke~~L~~~~~~i~e~~  137 (1060)
                      ....+++...+.+++|.-+.+.+..+++...++.+   .+++..++++......+.+-..|..+.+.++....+.|..+.
T Consensus       901 ~~k~~le~~l~~~~~~~e~~ee~~~~le~~~~~~~---~e~~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l~~e~~~~~  977 (1930)
T KOG0161|consen  901 AEKQELEKELKELKERLEEEEEKNAELERKKRKLE---QEVQELKEQLEELELTLQKLELEKNAAENKLKNLEEEINSLD  977 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444445555554444444444443333333   555555555555555556666777777777777777776655


Q ss_pred             H---hhhhhhhhHHHHHhhhhhhh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 001522          138 E---KLDLKMKEVGLVEKSNDKSL----VDQRRLENLIKDFCEQIELKEKDLRKIRSSIEECE  193 (1060)
Q Consensus       138 ~---~~~lK~kel~~~~~~~~~~~----~~~~~~e~~~~~~~~ele~keke~~~~~k~Ie~~~  193 (1060)
                      +   ++.--.+++++.-.++..++    .+-..+......+.-++...+..++..++...+++
T Consensus       978 e~~~kL~kekk~lEe~~~~l~~~l~~~eek~~~l~k~~~kle~~l~~le~~le~e~~~r~e~E 1040 (1930)
T KOG0161|consen  978 ENISKLSKEKKELEERIRELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVTLEREKRIRMELE 1040 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5   33333344555444444443    12222333444444444445555544444444444

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=98.73  E-value=0.00026  Score=89.70  Aligned_cols=7  Identities=43%  Similarity=0.890  Sum_probs=2.7

Q ss_pred             ccCCccc
Q 001522         1017 LSGGQMQ 1023 (1060)
Q Consensus      1017 ~~~~~~~ 1023 (1060)
                      +|||+++
T Consensus      1075 lSgge~~ 1081 (1164)
T TIGR02169      1075 MSGGEKS 1081 (1164)
T ss_pred             cCcchHH
Confidence            3333333

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=98.72  E-value=0.00062  Score=86.32  Aligned_cols=8  Identities=25%  Similarity=0.289  Sum_probs=3.4

Q ss_pred             cccccccc
Q 001522         1027 IASNHLRV 1034 (1060)
Q Consensus      1027 ~~~~~~~~ 1034 (1060)
                      ++..++||
T Consensus      1142 ~~d~~~~~ 1149 (1164)
T TIGR02169      1142 YADRAIGV 1149 (1164)
T ss_pred             hcceeEeE
Confidence            33444443

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>TIGR00606 rad50 rad50

Probab=98.66  E-value=0.0042  Score=81.48  Aligned_cols=116  Identities=22%  Similarity=0.292  Sum_probs=57.6

Q ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Q 001522          242 KKELELTQTSIIELSLELHLEEEKLESLQRIVRLRENELDSKEEKLDAMKEEMKKYFNDIELKEREFNGIRKCIEKR---  318 (1060)
Q Consensus       242 ~kEl~~~e~~i~e~~~ele~kEk~~e~~~k~ie~r~~el~~~~~e~~~~e~~~~~~~ke~e~KekEl~~~~k~ie~r---  318 (1060)
                      +.+|+...+.+.++..++.-.+.+++.....+..-..++............++...+..+.....+|....+.|..=   
T Consensus       887 e~~L~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~y~~~  966 (1311)
T TIGR00606       887 EEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIENKIQD  966 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            33344444444445555555555555555555544444444444444445555666666666666666666666541   


Q ss_pred             --HHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhHHHHHHhH
Q 001522          319 --SQELTLKEKQLKCVQESLEGCRNEFEEKENELISVEKLI  357 (1060)
Q Consensus       319 --~kELe~KEkql~~~~ke~~~~~~e~e~k~keL~s~~K~i  357 (1060)
                        -..|+..+..+......++.+..+.+..-.++..+.+.+
T Consensus       967 ~~~~qL~~~e~el~~~~~~ie~le~e~~~l~~~i~~l~kel 1007 (1311)
T TIGR00606       967 GKDDYLKQKETELNTVNAQLEECEKHQEKINEDMRLMRQDI 1007 (1311)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              223444445554444444444444444433443333333

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>TIGR00606 rad50 rad50

Probab=98.65  E-value=0.0072  Score=79.41  Aligned_cols=97  Identities=18%  Similarity=0.159  Sum_probs=47.9

Q ss_pred             hHHHHHHhHHHHHHhhhchhheecchhchHHHHHHhHHHHHHh-----------------hhhhHHHHHHHHHHHHHHhh
Q 001522           17 KKEILRRSYDLAHAQANSVLNFTVQWKDLEEHLDISMKSLEKQ-----------------SNDADSKIRLLDQRAKEIES   79 (1060)
Q Consensus        17 k~e~~~~~~~~~~~qas~~l~~~lqw~~le~h~~s~~~~~~~~-----------------~~~~~~~~~~le~r~ke~e~   79 (1060)
                      +-..|++-++.+..+|.+..-+.+-=++|.+.-.+...-+...                 .+.+.++.+.+.+-...+.+
T Consensus       516 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~el~~~~~~~~~  595 (1311)
T TIGR00606       516 KLRKLDQEMEQLNHHTTTRTQMEMLTKDKMDKDEQIRKIKSRHSDELTSLLGYFPNKKQLEDWLHSKSKEINQTRDRLAK  595 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344555556666666665555555444444333332222111                 22333444444444445555


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHhHHhHHHHHhhhh
Q 001522           80 KESDLVLAERRIKECNFELACKEKQLELVRKRIG  113 (1060)
Q Consensus        80 ke~~~~~~~~~~ee~~~el~~Kek~l~~~r~~i~  113 (1060)
                      .++++...+.+...+..++..+.+++.-..+.|.
T Consensus       596 ~~~el~~~e~~l~~~~~~l~~~~~eL~~~~~~i~  629 (1311)
T TIGR00606       596 LNKELASLEQNKNHINNELESKEEQLSSYEDKLF  629 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            5555555555555666666666666665554444

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=98.64  E-value=0.0012  Score=83.27  Aligned_cols=21  Identities=24%  Similarity=0.404  Sum_probs=8.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 001522          422 ERWQDLEIKERKFEERVKEFE  442 (1060)
Q Consensus       422 ~r~kELe~KekefE~rvKE~E  442 (1060)
                      .+..+|...-..++..+.+++
T Consensus      1000 ~q~~dL~~~~~~L~~~i~~i~ 1020 (1179)
T TIGR02168      1000 ERYDFLTAQKEDLTEAKETLE 1020 (1179)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444444444443

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]

Probab=98.63  E-value=0.0089  Score=80.02  Aligned_cols=51  Identities=22%  Similarity=0.233  Sum_probs=34.4

Q ss_pred             heecchhchHHHHHHhHHHH--HHhhhhhHHHHHHHHHHHHHHhhhhhhHHHH
Q 001522           37 NFTVQWKDLEEHLDISMKSL--EKQSNDADSKIRLLDQRAKEIESKESDLVLA   87 (1060)
Q Consensus        37 ~~~lqw~~le~h~~s~~~~~--~~~~~~~~~~~~~le~r~ke~e~ke~~~~~~   87 (1060)
                      .=+.+|=.|-++++-.-..-  +.+.....-....+.+.....|++..+++..
T Consensus       815 lr~w~W~~Lf~kvkPLL~~~~~ee~~~~~~~e~~~l~~~l~~~e~~~~ele~~  867 (1930)
T KOG0161|consen  815 LRTWPWWRLFTKVKPLLKVTKTEEEMRAKEEEIQKLKEELQKSESKRKELEEK  867 (1930)
T ss_pred             hccCHHHHHHHHHHHHHHhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44788999998887665554  4455555566677777777777766666644

>PRK03918 chromosome segregation protein; Provisional

Probab=98.57  E-value=0.0074  Score=75.45  Aligned_cols=44  Identities=23%  Similarity=0.219  Sum_probs=17.8

Q ss_pred             HHHHHHHHHHHHHHHHHhHHhHHHHHhhhhhhhhhhhhhhhhhH
Q 001522           84 LVLAERRIKECNFELACKEKQLELVRKRIGECECELQLKEGELN  127 (1060)
Q Consensus        84 ~~~~~~~~ee~~~el~~Kek~l~~~r~~i~Ec~~El~~ke~~L~  127 (1060)
                      ++....+++...+++..-..++..+...|.+...++...+.+++
T Consensus       233 l~~~~~~~~~l~~~~~~l~~~~~~l~~~i~~l~~el~~l~~~l~  276 (880)
T PRK03918        233 LEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIE  276 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333444444444444444444444333333344333333333

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=98.57  E-value=0.0019  Score=81.72  Aligned_cols=6  Identities=33%  Similarity=0.418  Sum_probs=2.5

Q ss_pred             hhHHHh
Q 001522          537 SLVLDA  542 (1060)
Q Consensus       537 klVLDa  542 (1060)
                      =++||-
T Consensus      1114 ~~~lDE 1119 (1179)
T TIGR02168      1114 FCILDE 1119 (1179)
T ss_pred             eEEecC
Confidence            344443

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=98.44  E-value=0.0066  Score=78.88  Aligned_cols=25  Identities=28%  Similarity=0.428  Sum_probs=14.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001522          420 LDERWQDLEIKERKFEERVKEFELR  444 (1060)
Q Consensus       420 le~r~kELe~KekefE~rvKE~Elk  444 (1060)
                      +..+..+|....+.+.+.+.+++.+
T Consensus       982 l~~~~~dl~~a~~~l~~~i~~~d~~ 1006 (1163)
T COG1196         982 LKSQREDLEEAKEKLLEVIEELDKE 1006 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445556666666666666666644

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=98.40  E-value=0.0046  Score=80.29  Aligned_cols=17  Identities=24%  Similarity=0.337  Sum_probs=9.6

Q ss_pred             hHHHHHHHHHHHHhhhh
Q 001522          897 IENIKQRIVQLEMAKAD  913 (1060)
Q Consensus       897 ~~~LkkRI~qLeK~kae  913 (1060)
                      ...|+..|..+.+.+.+
T Consensus       993 ~~~l~~~i~~~d~~~~~ 1009 (1163)
T COG1196         993 KEKLLEVIEELDKEKRE 1009 (1163)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            35566666666555543

>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]

Probab=98.22  E-value=0.032  Score=66.87  Aligned_cols=156  Identities=22%  Similarity=0.220  Sum_probs=78.4

Q ss_pred             hhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHH-Hhhhhh---hHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Q 001522          203 ASSLQSLIEDYAEELESKEKLYDEIKKSIIQC-ETKLDC---KKKELELTQTSIIELSLELHLEEEKLESLQRIVRLREN  278 (1060)
Q Consensus       203 ~~~~e~~ie~~~~ELE~Kek~~e~~~ke~e~~-~k~l~~---k~kEl~~~e~~i~e~~~ele~kEk~~e~~~k~ie~r~~  278 (1060)
                      .-.++.+|++..++++.+=-+|......|-.- -....+   -.....-..-.+..+++  -.....+.++..++..+.+
T Consensus       362 vw~~~l~~~~~f~~le~~~~~~~~l~~~i~l~~~~~~~n~~~~pe~~~~~~~d~k~~V~--~~l~el~~ei~~~~~~~~~  439 (581)
T KOG0995|consen  362 VWELKLEIEDFFKELEKKFIDLNSLIRRIKLGIAENSKNLERNPERAATNGVDLKSYVK--PLLKELLDEISEELHEAEN  439 (581)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCCccCccccccchhHhH--HHHHHHHHHHHHHHHHHHH
Confidence            44455567777778887777777777666555 111111   00000000000111110  0112223333333333333


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhhhhhHHHHHHHhHHHHHHhH
Q 001522          279 ELDSKEEKLDAMKEEMKKYFNDIELKEREFNGIRKCIEKRSQELTLKEKQLKCVQE-SLEGCRNEFEEKENELISVEKLI  357 (1060)
Q Consensus       279 el~~~~~e~~~~e~~~~~~~ke~e~KekEl~~~~k~ie~r~kELe~KEkql~~~~k-e~~~~~~e~e~k~keL~s~~K~i  357 (1060)
                      ++..           .++.+......-.|...+...|+.++++++++..+...-.. +-..|..|.|..+++|-...-.+
T Consensus       440 ~~~t-----------Lq~~~~~~~~~i~E~~~~l~~~~~el~~~~~~~~~~k~e~eee~~k~~~E~e~le~~l~~l~l~~  508 (581)
T KOG0995|consen  440 ELET-----------LQEHFSNKASTIEEKIQILGEIELELKKAESKYELKKEEAEEEWKKCRKEIEKLEEELLNLKLVL  508 (581)
T ss_pred             HHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3322           12344455555566667777788888888887777654433 33666777777777665555555


Q ss_pred             HHhHHHHHHhhhHH
Q 001522          358 DKCSEELELKKKHL  371 (1060)
Q Consensus       358 e~~~kELe~kekql  371 (1060)
                      ...+++.+...+..
T Consensus       509 ~~~m~~a~~~v~s~  522 (581)
T KOG0995|consen  509 NTSMKEAEELVKSI  522 (581)
T ss_pred             HHHHHHHHHHHHHH
Confidence            55555555444443

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=98.14  E-value=0.037  Score=69.60  Aligned_cols=42  Identities=19%  Similarity=0.357  Sum_probs=30.5

Q ss_pred             HHHHHHHhhhhc--ccchhhHHHHHHHHHhhcCCCCCChHHHHH
Q 001522          592 VAGEWKKKMRVA--EDNSLEVLGFLHLLAAYGLGPSFDGIELES  633 (1060)
Q Consensus       592 LA~~WK~~~~~~--~en~levLGFL~lla~ygL~s~FD~dEll~  633 (1060)
                      +..-||..+..=  |.-||.+|...+-+--|.=+|.|=-||+-.
T Consensus      1072 ~G~iWKeSL~ELSGGQRSLVALsLIlamL~fkPAPlYILDEVDA 1115 (1174)
T KOG0933|consen 1072 FGGIWKESLSELSGGQRSLVALSLILAMLKFKPAPLYILDEVDA 1115 (1174)
T ss_pred             eCccHHHHHHHhcCchHHHHHHHHHHHHHcCCCCceeehhhhHH
Confidence            344588887654  567888888877777777788887777763

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=97.93  E-value=0.15  Score=64.14  Aligned_cols=112  Identities=22%  Similarity=0.274  Sum_probs=50.2

Q ss_pred             hhhhhhhhhhHhhHHHHHHHHHhhhhhhhhHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 001522          117 CELQLKEGELNLVKKSVEEWLEKLDLKMKEVGLVEKSNDKSLVDQRRLENLIKDFCEQIELKEKDLRKIRSSIEECEKEL  196 (1060)
Q Consensus       117 ~El~~ke~~L~~~~~~i~e~~~~~~lK~kel~~~~~~~~~~~~~~~~~e~~~~~~~~ele~keke~~~~~k~Ie~~~kel  196 (1060)
                      .++.+...+...++.-|+-..+.+--|+.+-...+.+++-=..+..+-...+.+...++...+.+..-...+|++..-.+
T Consensus       308 t~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~  387 (775)
T PF10174_consen  308 TRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDML  387 (775)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444444444444444444444444444444433311123333334444444444444444444444444444444


Q ss_pred             HHHHHhhhhHHHHHHHHHHHHHhhhhhHHHHH
Q 001522          197 VMKEKHASSLQSLIEDYAEELESKEKLYDEIK  228 (1060)
Q Consensus       197 ~~Ke~~~~~~e~~ie~~~~ELE~Kek~~e~~~  228 (1060)
                      +.+++.+.-+...|+.+..-|.-|+++++..+
T Consensus       388 d~~e~ki~~Lq~kie~Lee~l~ekd~ql~~~k  419 (775)
T PF10174_consen  388 DKKERKINVLQKKIENLEEQLREKDRQLDEEK  419 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44454444444444444444444444444443

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=97.75  E-value=0.03  Score=60.78  Aligned_cols=37  Identities=16%  Similarity=0.136  Sum_probs=20.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001522          295 KKYFNDIELKEREFNGIRKCIEKRSQELTLKEKQLKC  331 (1060)
Q Consensus       295 ~~~~ke~e~KekEl~~~~k~ie~r~kELe~KEkql~~  331 (1060)
                      +.++..++.+..+|+..-+.+...++.|+..+.+...
T Consensus       133 EeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~  169 (237)
T PF00261_consen  133 EERAEAAESKIKELEEELKSVGNNLKSLEASEEKASE  169 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhH
Confidence            4455555555555555555555555555555555444

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=97.69  E-value=0.062  Score=58.34  Aligned_cols=82  Identities=22%  Similarity=0.114  Sum_probs=40.0

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhHHHHHHhHHHhHHHHHHhhhHHHHHHhhHHHHHHHhhhhhhhhhHHHH
Q 001522          318 RSQELTLKEKQLKCVQESLEGCRNEFEEKENELISVEKLIDKCSEELELKKKHLCVIENSAAELSDECESNELELDLIQT  397 (1060)
Q Consensus       318 r~kELe~KEkql~~~~ke~~~~~~e~e~k~keL~s~~K~ie~~~kELe~kekqle~ie~~~kel~~e~EsKeKele~~~~  397 (1060)
                      +..+...+-..++.-....+.+...++.+.++|+.-=+.+...++.|+....+....+..+..-+..|..+-++.+.+..
T Consensus       114 k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae  193 (237)
T PF00261_consen  114 KYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEAENRAE  193 (237)
T ss_dssp             HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333444444555555555555556666666666666666644444444444444444444444333


Q ss_pred             HH
Q 001522          398 MA  399 (1060)
Q Consensus       398 ~~  399 (1060)
                      ..
T Consensus       194 ~a  195 (237)
T PF00261_consen  194 FA  195 (237)
T ss_dssp             HH
T ss_pred             HH
Confidence            33

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=97.61  E-value=0.51  Score=60.84  Aligned_cols=98  Identities=19%  Similarity=0.237  Sum_probs=40.4

Q ss_pred             HHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhHHHHHH
Q 001522          209 LIEDYAEELESKEKLYDEIKKSIIQCETKLDCKKKELELTQTSIIELSLELHLEEEKLESLQRIVRLRENELDSKEEKLD  288 (1060)
Q Consensus       209 ~ie~~~~ELE~Kek~~e~~~ke~e~~~k~l~~k~kEl~~~e~~i~e~~~ele~kEk~~e~~~k~ie~r~~el~~~~~e~~  288 (1060)
                      +|++++.++..+...+.....+++....+++..   |..       +...+.-.+++++.-.+++...++-.+.-..++.
T Consensus       374 ~~~e~~~~~kn~~~~~k~~~~~~e~~~vk~~E~---lK~-------~~~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~  443 (1293)
T KOG0996|consen  374 EIKERAKELKNKFESLKKKFQDLEREDVKREEK---LKR-------LTSKIKKLEKEIEKARRKKSELEKAPEKARIEIQ  443 (1293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH-------HHHHHHHHHHHHHHHHhhHHHHHhCchhhHhHHH
Confidence            344455555444444444444444444444222   222       2222333333344444444333333333333344


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001522          289 AMKEEMKKYFNDIELKEREFNGIRKCIE  316 (1060)
Q Consensus       289 ~~e~~~~~~~ke~e~KekEl~~~~k~ie  316 (1060)
                      .++.++..+-...+.-+++|..++..+.
T Consensus       444 ~~~~ei~~L~~~~~~~~~~l~e~~~~l~  471 (1293)
T KOG0996|consen  444 KCQTEIEQLEELLEKEERELDEILDSLK  471 (1293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4444444444444444444444444443

>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=97.51  E-value=0.57  Score=58.92  Aligned_cols=235  Identities=23%  Similarity=0.270  Sum_probs=135.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhh
Q 001522          162 RRLENLIKDFCEQIELKEKDLRKIRSSIEECEKELVMKEKHASSLQSLIEDYAEELESKEKLYDEIKKSIIQCETKLDCK  241 (1060)
Q Consensus       162 ~~~e~~~~~~~~ele~keke~~~~~k~Ie~~~kel~~Ke~~~~~~e~~ie~~~~ELE~Kek~~e~~~ke~e~~~k~l~~k  241 (1060)
                      .+|++++.+|++.|+...-.    +++=-.+-+||+.--.|++..+.=--.++...-...+++...+++.+.--.=-+..
T Consensus       227 ~eLr~QvrdLtEkLetlR~k----R~EDk~Kl~ElekmkiqleqlqEfkSkim~qqa~Lqrel~raR~e~keaqe~ke~~  302 (1243)
T KOG0971|consen  227 EELRAQVRDLTEKLETLRLK----RAEDKAKLKELEKMKIQLEQLQEFKSKIMEQQADLQRELKRARKEAKEAQEAKERY  302 (1243)
T ss_pred             HHHHHHHHHHHHHHHHHHhh----hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34677777777665543211    11111222333333333333332222233333445555555555544443333455


Q ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHH
Q 001522          242 KKELELTQTSIIELSLELHLEEEKLESLQRIVRLRENELDSKEEKLDAMKEEMKKY-----------FNDIELKEREFNG  310 (1060)
Q Consensus       242 ~kEl~~~e~~i~e~~~ele~kEk~~e~~~k~ie~r~~el~~~~~e~~~~e~~~~~~-----------~ke~e~KekEl~~  310 (1060)
                      +.|+.-+.+.|+=..-.-|.-|..-++.+.+++.--.++++.+..++-.+.+|++.           +|.++..    +.
T Consensus       303 k~emad~ad~iEmaTldKEmAEERaesLQ~eve~lkEr~deletdlEILKaEmeekG~~~~~~ss~qfkqlEqq----N~  378 (1243)
T KOG0971|consen  303 KEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELETDLEILKAEMEEKGSDGQAASSYQFKQLEQQ----NA  378 (1243)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHH----HH
Confidence            67777788888777777788888899999999888888888888888777777543           4444432    22


Q ss_pred             HHHHHHHHHHHHHHHHHH-HHHHHhhhhhhhhHHHHHHHhHHHHHHhHHHhHHHHHHhhhHHHHHHhhHH------HHHH
Q 001522          311 IRKCIEKRSQELTLKEKQ-LKCVQESLEGCRNEFEEKENELISVEKLIDKCSEELELKKKHLCVIENSAA------ELSD  383 (1060)
Q Consensus       311 ~~k~ie~r~kELe~KEkq-l~~~~ke~~~~~~e~e~k~keL~s~~K~ie~~~kELe~kekqle~ie~~~k------el~~  383 (1060)
                      +.|.-=.|+-+|-.-+|+ +.-.+++++-+..|+.    +|......+-.++...|+.--.|   ..+|.      +.|.
T Consensus       379 rLKdalVrLRDlsA~ek~d~qK~~kelE~k~sE~~----eL~r~kE~Lsr~~d~aEs~iadl---kEQVDAAlGAE~MV~  451 (1243)
T KOG0971|consen  379 RLKDALVRLRDLSASEKQDHQKLQKELEKKNSELE----ELRRQKERLSRELDQAESTIADL---KEQVDAALGAEEMVE  451 (1243)
T ss_pred             HHHHHHHHHHhcchHHHHHHHHHHHHHHHHhhHHH----HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhhcHHHHHH
Confidence            233333456666666665 4444555555555543    45566666666666666655555   33332      3366


Q ss_pred             HhhhhhhhhhHHHHHHHHhHHHHHHHHH
Q 001522          384 ECESNELELDLIQTMAIGYLKQLKEKEK  411 (1060)
Q Consensus       384 e~EsKeKele~~~~~~~~~~ke~e~kek  411 (1060)
                      .+-+|.-++|.+.+.+++-.-+++..+.
T Consensus       452 qLtdknlnlEekVklLeetv~dlEalee  479 (1243)
T KOG0971|consen  452 QLTDKNLNLEEKVKLLEETVGDLEALEE  479 (1243)
T ss_pred             HHHhhccCHHHHHHHHHHHHHHHHHHHH
Confidence            6667777777777777776666555443

>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]

Probab=97.47  E-value=1  Score=60.84  Aligned_cols=205  Identities=19%  Similarity=0.215  Sum_probs=121.6

Q ss_pred             HhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhh---------------------------
Q 001522          186 RSSIEECEKELVMKEKHASSLQSLIEDYAEELESKEKLYDEIKKSIIQCETKL---------------------------  238 (1060)
Q Consensus       186 ~k~Ie~~~kel~~Ke~~~~~~e~~ie~~~~ELE~Kek~~e~~~ke~e~~~k~l---------------------------  238 (1060)
                      .+-|-..+++.+--++++..+..+...+.....+-.+.+++.+..+-.++...                           
T Consensus      1152 ~~iv~~LR~Ekei~~tk~~~lk~e~~~L~qq~~~~~k~i~dL~~sL~~~r~~~q~~a~s~~e~~~i~~~v~~vNll~EsN 1231 (1822)
T KOG4674|consen 1152 QNIVSFLRKEKEIAETKLDTLKRENARLKQQVASLNRTIDDLQRSLTAERASSQKSAVSDDEHKEILEKVEEVNLLRESN 1231 (1822)
T ss_pred             HHHHHHHHhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHhH
Confidence            33344444444444555555555555555566666666666665555555222                           


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH---HHHHHHHHHH-----HHHHHH
Q 001522          239 DCKKKELELTQTSIIELSLELHLEEEKLESLQRIVRLRENELDSKEEKLDAMKEEM---KKYFNDIELK-----EREFNG  310 (1060)
Q Consensus       239 ~~k~kEl~~~e~~i~e~~~ele~kEk~~e~~~k~ie~r~~el~~~~~e~~~~e~~~---~~~~ke~e~K-----ekEl~~  310 (1060)
                      ...+++++.....+.++..+++..+..+.-.+..+..-..++.-+..+++.++.++   +.++.++..+     -.+++.
T Consensus      1232 ~~LRee~~~~~~k~qEl~~~i~kl~~el~plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~q~L~~k~k~~d~~~~~k 1311 (1822)
T KOG4674|consen 1232 KVLREENEANLEKIQELRDKIEKLNFELAPLQNELKELKAELQEKVAELKKLEEENDRWKQRNQDLLEKYKDSDKNDYEK 1311 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHH
Confidence            12244444555555566666666655555555555555555555555555555544   2334444444     233455


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhHHHHHHhHHHhHHHHHHhhhHHHHHHhhHHHHHHHhhhhhh
Q 001522          311 IRKCIEKRSQELTLKEKQLKCVQESLEGCRNEFEEKENELISVEKLIDKCSEELELKKKHLCVIENSAAELSDECESNEL  390 (1060)
Q Consensus       311 ~~k~ie~r~kELe~KEkql~~~~ke~~~~~~e~e~k~keL~s~~K~ie~~~kELe~kekqle~ie~~~kel~~e~EsKeK  390 (1060)
                      ....|+.-..+|+.+++++.++.+.+....+.+..+++.|.--......++++++.+...|.-.+....+.+.++..+.+
T Consensus      1312 L~~ei~~Lk~el~~ke~~~~el~~~~~~~q~~~k~qld~l~~e~~~lt~~~~ql~~~~~rL~~~~~e~~~q~~el~~~~~ 1391 (1822)
T KOG4674|consen 1312 LKSEISRLKEELEEKENLIAELKKELNRLQEKIKKQLDELNNEKANLTKELEQLEDLKTRLAAALSEKNAQELELSDKKK 1391 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55566666678888888888888888888888888888888888888888888888888885444444444444444443

>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]

Probab=97.44  E-value=1.1  Score=60.55  Aligned_cols=58  Identities=22%  Similarity=0.312  Sum_probs=45.4

Q ss_pred             cchhhhhhhhHhhHHHHHHhHHHHHHhhhchhheecchhchHHHHHHhHHHHHHhhhhhHH
Q 001522            5 DNNKEELRLAESKKEILRRSYDLAHAQANSVLNFTVQWKDLEEHLDISMKSLEKQSNDADS   65 (1060)
Q Consensus         5 ~~~~~~l~l~~~k~e~~~~~~~~~~~qas~~l~~~lqw~~le~h~~s~~~~~~~~~~~~~~   65 (1060)
                      +++.+.+.+++-|=++|++.++...+.+-++.   =+-++|.+++-.-...+...+.++..
T Consensus       678 ~k~~~~~~fA~ekle~L~~~ie~~K~e~~tL~---er~~~l~~~i~~~~q~~~~~s~eL~~  735 (1822)
T KOG4674|consen  678 EKLKNELNLAKEKLENLEKNLELTKEEVETLE---ERNKNLQSTISKQEQTVHTLSQELLS  735 (1822)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            35788899999999999999999888887665   45677888777777777777777763

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=97.44  E-value=0.75  Score=58.61  Aligned_cols=62  Identities=16%  Similarity=0.167  Sum_probs=38.0

Q ss_pred             HHHhHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhHHhHHHHHh
Q 001522           49 LDISMKSLEKQSNDADSKIRLLDQRAKEIESKESDLVLAERRIKECNFELACKEKQLELVRK  110 (1060)
Q Consensus        49 ~~s~~~~~~~~~~~~~~~~~~le~r~ke~e~ke~~~~~~~~~~ee~~~el~~Kek~l~~~r~  110 (1060)
                      ++-....++.....+..-.+.|.++++.+..-+..++.++....+..+-++..++.++-+..
T Consensus       324 l~~e~~k~e~i~~~i~e~~~~l~~k~~~~~~~~~~~~~~ke~~~~~s~~~e~~e~~~eslt~  385 (1174)
T KOG0933|consen  324 LNGEEEKLEEIRKNIEEDRKKLKEKEKAMAKVEEGYEKLKEAFQEDSKLLEKAEELVESLTA  385 (1174)
T ss_pred             HhhhHHHHHHHHHhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            33333344444444445556666667777666667777777777777777777777765554

>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]

Probab=97.38  E-value=0.63  Score=56.33  Aligned_cols=36  Identities=19%  Similarity=0.299  Sum_probs=19.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001522          404 KQLKEKEKQFHSLKEALDERWQDLEIKERKFEERVK  439 (1060)
Q Consensus       404 ke~e~kekefeskEk~le~r~kELe~KekefE~rvK  439 (1060)
                      .+.+.+++++..++-.+.-.+++.+...+..+....
T Consensus       492 ~E~e~le~~l~~l~l~~~~~m~~a~~~v~s~e~el~  527 (581)
T KOG0995|consen  492 KEIEKLEEELLNLKLVLNTSMKEAEELVKSIELELD  527 (581)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            355566666665555555555555555554444333

>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]

Probab=97.36  E-value=0.79  Score=57.08  Aligned_cols=166  Identities=17%  Similarity=0.164  Sum_probs=88.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhh
Q 001522          160 DQRRLENLIKDFCEQIELKEKDLRKIRSSIEECEKELVMKEKHASSLQSLIEDYAEELESKEKLYDEIKKSIIQCETKLD  239 (1060)
Q Consensus       160 ~~~~~e~~~~~~~~ele~keke~~~~~k~Ie~~~kel~~Ke~~~~~~e~~ie~~~~ELE~Kek~~e~~~ke~e~~~k~l~  239 (1060)
                      +.++++++|-.|....-.+|-+.-+++--|..-.-.+..-+++++....+.+++..+|-.|--++--.-.++.-....|.
T Consensus       100 dlk~~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~eLsAk~~eIf~~~~~L~nk~~~lt  179 (1265)
T KOG0976|consen  100 DLKHHESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLEDELSAKAHDIFMIGEDLHDKNEELN  179 (1265)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHh
Confidence            44556667777766666777777777777777777777777777777777777777777776666655555555555554


Q ss_pred             hhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH----------HhhhhhHHHHHHHHHHHH---HHHHHHHHHHHH
Q 001522          240 CKKKELELTQTSIIELSLELHLEEEKLESLQRIVRLR----------ENELDSKEEKLDAMKEEM---KKYFNDIELKER  306 (1060)
Q Consensus       240 ~k~kEl~~~e~~i~e~~~ele~kEk~~e~~~k~ie~r----------~~el~~~~~e~~~~e~~~---~~~~ke~e~Kek  306 (1060)
                      ....+++-+-....+..+.++-+=+++.+-..+...+          ..++.+..+++-.-...|   +.++--++.+++
T Consensus       180 ~~~~q~~tkl~e~~~en~~le~k~~k~~e~~~~nD~~sle~~~~q~~tq~vl~ev~QLss~~q~ltp~rk~~s~i~E~d~  259 (1265)
T KOG0976|consen  180 EFNMEFQTKLAEANREKKALEEKLEKFKEDLIEKDQKSLELHKDQENTQKVLKEVMQLSSQKQTLTPLRKTCSMIEEQDM  259 (1265)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHhhhhHHHHHHHH
Confidence            4455554444444444444444433333322222111          111122233333222222   344555555666


Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 001522          307 EFNGIRKCIEKRSQELTLK  325 (1060)
Q Consensus       307 El~~~~k~ie~r~kELe~K  325 (1060)
                      .++..-|.|++.+.+|+.+
T Consensus       260 ~lq~sak~ieE~m~qlk~k  278 (1265)
T KOG0976|consen  260 DLQASAKEIEEKMRQLKAK  278 (1265)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            6655555555544444443

>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=97.30  E-value=1.1  Score=57.46  Aligned_cols=24  Identities=25%  Similarity=0.410  Sum_probs=12.1

Q ss_pred             hHHHHHHHHHHHHHHhhhhhhHHH
Q 001522           63 ADSKIRLLDQRAKEIESKESDLVL   86 (1060)
Q Consensus        63 ~~~~~~~le~r~ke~e~ke~~~~~   86 (1060)
                      +......++++.++++.-....+.
T Consensus       230 l~~e~e~l~~~~~el~~~~~~~~~  253 (908)
T COG0419         230 LEQEIEALEERLAELEEEKERLEE  253 (908)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344455555555555554444444

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]

Probab=97.21  E-value=1.4  Score=56.81  Aligned_cols=131  Identities=19%  Similarity=0.297  Sum_probs=79.8

Q ss_pred             HHHHHHHHHHHHHhHHhHHHHHhhhhhhhhhhhhhhhhhHhhHHHHHHHHH-------hhhhhhhhHHHHHhhhhhhh-H
Q 001522           88 ERRIKECNFELACKEKQLELVRKRIGECECELQLKEGELNLVKKSVEEWLE-------KLDLKMKEVGLVEKSNDKSL-V  159 (1060)
Q Consensus        88 ~~~~ee~~~el~~Kek~l~~~r~~i~Ec~~El~~ke~~L~~~~~~i~e~~~-------~~~lK~kel~~~~~~~~~~~-~  159 (1060)
                      ++++.+..-|....+.++..+|       ..++..+.+.+.++-++.+.+-       ..+..++.++-..+...+++ +
T Consensus       322 ea~i~~~~~e~~~~d~Ei~~~r-------~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~  394 (1074)
T KOG0250|consen  322 EAKIGELKDEVDAQDEEIEEAR-------KDLDDLRREVNDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQTNNELGS  394 (1074)
T ss_pred             HHHHHHHHHhhhhhhHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence            3333444444444444444444       6666666666666655555544       33444444444444444455 6


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhhHH
Q 001522          160 DQRRLENLIKDFCEQIELKEKDLRKIRSSIEECEKELVMKEKHASSLQSLIEDYAEELESKEKLYD  225 (1060)
Q Consensus       160 ~~~~~e~~~~~~~~ele~keke~~~~~k~Ie~~~kel~~Ke~~~~~~e~~ie~~~~ELE~Kek~~e  225 (1060)
                      .+.+.++.++.|..+.+..+.+..+.+.+++.+..++...+..+..++.+|..+.+.++..-.++.
T Consensus       395 ~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i~~~~~~l~  460 (1074)
T KOG0250|consen  395 ELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQLRKKIENISEELK  460 (1074)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            677778888888888888888888888888888888888777777777776555444444443333

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.19  E-value=0.62  Score=57.85  Aligned_cols=23  Identities=22%  Similarity=0.192  Sum_probs=15.3

Q ss_pred             HHhhhhhhhHHHHHHHHHHHHHH
Q 001522          150 VEKSNDKSLVDQRRLENLIKDFC  172 (1060)
Q Consensus       150 ~~~~~~~~~~~~~~~e~~~~~~~  172 (1060)
                      .+..++++|.+|++||+++.+-.
T Consensus       369 ~qlElekqLerQReiE~qrEEer  391 (1118)
T KOG1029|consen  369 AQLELEKQLERQREIERQREEER  391 (1118)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            44455677778888887776544

>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]

Probab=97.15  E-value=1.8  Score=56.95  Aligned_cols=119  Identities=21%  Similarity=0.148  Sum_probs=65.4

Q ss_pred             HHhhhhhhHHHHHHHHHHHHHHHHHhHHhHHHHH--------------hhhhhhh---------hhhhhhhhhhHhhHHH
Q 001522           76 EIESKESDLVLAERRIKECNFELACKEKQLELVR--------------KRIGECE---------CELQLKEGELNLVKKS  132 (1060)
Q Consensus        76 e~e~ke~~~~~~~~~~ee~~~el~~Kek~l~~~r--------------~~i~Ec~---------~El~~ke~~L~~~~~~  132 (1060)
                      ++.+++.-+..--+-+.+...+|+.-+.++..-|              +-|+.|.         +.+.+++. -.++.  
T Consensus       618 ~~k~~~~~lk~~sgt~~~~~~~le~l~~eie~~rk~l~~lq~~s~~Y~k~Ie~~~~~~~CplC~r~f~~eee-~ef~~--  694 (1294)
T KOG0962|consen  618 ELKSKEFFLKDESGTIDEYLDLLERLKGEIEKARKDLAMLQGRSALYRKFIEIACRSHCCPLCQRSFTTEEE-VEFIK--  694 (1294)
T ss_pred             HHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhccCCCccCCccchHHH-HHHHH--
Confidence            3344444444444444555555555555555544              4666654         44555544 34443  


Q ss_pred             HHHHHHhhhhhhhhHHHHHhhhhhhh------HHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 001522          133 VEEWLEKLDLKMKEVGLVEKSNDKSL------VDQRRLEN-LIKDFCEQIELKEKDLRKIRSSIEECEKELVMK  199 (1060)
Q Consensus       133 i~e~~~~~~lK~kel~~~~~~~~~~~------~~~~~~e~-~~~~~~~ele~keke~~~~~k~Ie~~~kel~~K  199 (1060)
                        +...++++.--++.+..+.+.+..      ...+.+.. .++.+++.+...+++++.+...|+...-+++.-
T Consensus       695 --~l~~~i~s~p~~~~~~~~~l~k~~k~~e~l~~~~~~~~~~~~l~~~~i~e~~~~l~~~~~el~~~~~~~e~~  766 (1294)
T KOG0962|consen  695 --KLESKIDSAPDKLEEAEVELSKEEKIFEILLKLKPTFGSIIKLIDKEIPELEKELQEVYEELGDLSEEEEDD  766 (1294)
T ss_pred             --HHHHHHhccchhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhhhHH
Confidence              333467777666666555554332      22333333 556666777777777777777777666555443

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=97.14  E-value=1.4  Score=55.67  Aligned_cols=232  Identities=20%  Similarity=0.256  Sum_probs=132.7

Q ss_pred             HHHHHHHHHHHHHHHHHhHHhHHHHHhhhhhhhhhhhhhhhhhHhhHHHHHHHHHhhhhhhhhHHHHHhhhhhhh-HHHH
Q 001522           84 LVLAERRIKECNFELACKEKQLELVRKRIGECECELQLKEGELNLVKKSVEEWLEKLDLKMKEVGLVEKSNDKSL-VDQR  162 (1060)
Q Consensus        84 ~~~~~~~~ee~~~el~~Kek~l~~~r~~i~Ec~~El~~ke~~L~~~~~~i~e~~~~~~lK~kel~~~~~~~~~~~-~~~~  162 (1060)
                      ++.....+.....|.+---.++..+|+.+++-...+.+-...|.....+|+...+.++.|+-.-.....+  ... .-..
T Consensus       109 ld~~~~q~~rl~~E~er~~~El~~lr~~lE~~q~~~e~~q~~l~~~~eei~kL~e~L~~~g~~~~~~~~~--~~~~~~~~  186 (775)
T PF10174_consen  109 LDKAQEQFERLQAERERLQRELERLRKTLEELQLRIETQQQTLDKADEEIEKLQEMLQSKGLSAEAEEED--NEALRRIR  186 (775)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccchhhh--hHHHHHHH
Confidence            4455666666677777777777777777777778888888888888888888888776665543211110  111 3344


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhH-------------HHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhhHH----
Q 001522          163 RLENLIKDFCEQIELKEKDLRKIRSSI-------------EECEKELVMKEKHASSLQSLIEDYAEELESKEKLYD----  225 (1060)
Q Consensus       163 ~~e~~~~~~~~ele~keke~~~~~k~I-------------e~~~kel~~Ke~~~~~~e~~ie~~~~ELE~Kek~~e----  225 (1060)
                      +.+..+..+.--++.+++++...+..+             +...+-++.|++...++++.++..-.|+......++    
T Consensus       187 ~~e~~~~~le~lle~~e~~~~~~r~~l~~~~~~~~~~a~t~alq~~ie~Kd~ki~~lEr~l~~le~Ei~~L~~~~~~~~~  266 (775)
T PF10174_consen  187 EAEARIMRLESLLERKEKEHMEAREQLHRRLQMERDDAETEALQTVIEEKDTKIASLERMLRDLEDEIYRLRSRGELSEA  266 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence            455555555555666666663221111             122334445555566665555554444444432222    


Q ss_pred             ---HHHHHHHH-------HHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 001522          226 ---EIKKSIIQ-------CETKLDCKKKELELTQTSIIELSLELHLEEEKLESLQRIVRLRENELDSKEEKLDAMKEEMK  295 (1060)
Q Consensus       226 ---~~~ke~e~-------~~k~l~~k~kEl~~~e~~i~e~~~ele~kEk~~e~~~k~ie~r~~el~~~~~e~~~~e~~~~  295 (1060)
                         ...+.++.       -..+++.-.-+|.-+...+..+.++++....+....+..|+.-..++-.+.-+-..+...++
T Consensus       267 ~r~~~~k~le~~~s~~~~mK~k~d~~~~eL~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve  346 (775)
T PF10174_consen  267 DRDRLDKQLEVYKSHSLAMKSKMDRLKLELSRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVE  346 (775)
T ss_pred             chHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence               11112221       11234444555555556667777777777777777777777666666665555555666666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q 001522          296 KYFNDIELKEREFNGIRKCIEK  317 (1060)
Q Consensus       296 ~~~ke~e~KekEl~~~~k~ie~  317 (1060)
                      .+.-.++.+...++-..+.++.
T Consensus       347 ~Lr~rle~k~~~l~kk~~~~~~  368 (775)
T PF10174_consen  347 ALRFRLEEKNSQLEKKQAQIEK  368 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            6666666666666555555533

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=97.05  E-value=2.1  Score=55.84  Aligned_cols=47  Identities=26%  Similarity=0.309  Sum_probs=26.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhhHHHHHHHHHHHHHhhh
Q 001522          158 LVDQRRLENLIKDFCEQIELKEK---DLRKIRSSIEECEKELVMKEKHAS  204 (1060)
Q Consensus       158 ~~~~~~~e~~~~~~~~ele~kek---e~~~~~k~Ie~~~kel~~Ke~~~~  204 (1060)
                      +.+...++-..+++++++.....   ++..+...++..+..|-...+.++
T Consensus       559 ~~~~~kl~~~~~e~~~~iq~~~e~~~~~~d~l~~le~~k~~ls~~~~~~~  608 (1317)
T KOG0612|consen  559 SEDAGKLRKHSKELSKQIQQELEENRDLEDKLSLLEESKSKLSKENKKLR  608 (1317)
T ss_pred             HHHHhhHhhhhhhhhHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555666677777777666655   555555555555555444444333

>PHA02562 46 endonuclease subunit; Provisional

Probab=97.01  E-value=1  Score=53.88  Aligned_cols=71  Identities=15%  Similarity=0.243  Sum_probs=33.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHh
Q 001522          163 RLENLIKDFCEQIELKEKDLRKIRSSIEECEKELVMKEKHASSLQSLIEDYAEELESKEKLYDEIKKSIIQCET  236 (1060)
Q Consensus       163 ~~e~~~~~~~~ele~keke~~~~~k~Ie~~~kel~~Ke~~~~~~e~~ie~~~~ELE~Kek~~e~~~ke~e~~~k  236 (1060)
                      .++..++.+..++...+.+++..+..|+...+.+.   .....++.+++.+..+....+.+++.++.++.....
T Consensus       178 e~~~~i~~l~~~i~~l~~~i~~~~~~i~~~~~~~~---~~i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~~  248 (562)
T PHA02562        178 ELNQQIQTLDMKIDHIQQQIKTYNKNIEEQRKKNG---ENIARKQNKYDELVEEAKTIKAEIEELTDELLNLVM  248 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            34445555555555555555555555555544432   223334444444444444444444444444444433

>PRK11637 AmiB activator; Provisional

Probab=97.00  E-value=0.6  Score=54.74  Aligned_cols=44  Identities=11%  Similarity=0.191  Sum_probs=19.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 001522          295 KKYFNDIELKEREFNGIRKCIEKRSQELTLKEKQLKCVQESLEG  338 (1060)
Q Consensus       295 ~~~~ke~e~KekEl~~~~k~ie~r~kELe~KEkql~~~~ke~~~  338 (1060)
                      ..++.++.....++......++....+|+..-.+++.....+..
T Consensus       169 ~~~l~~l~~~~~~L~~~k~~le~~~~~l~~~~~e~~~~k~~L~~  212 (428)
T PRK11637        169 QETIAELKQTREELAAQKAELEEKQSQQKTLLYEQQAQQQKLEQ  212 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444555444455544444444444444444444443333333

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]

Probab=96.90  E-value=2.5  Score=54.59  Aligned_cols=188  Identities=16%  Similarity=0.238  Sum_probs=114.5

Q ss_pred             hhhHHHHHHHHHHHHHHHHHhHHhHHHHHhhhhhhhhhhhhhhhhhHhhHHHHHHHHHhhhhhhhhHHHHHhhhhhhhHH
Q 001522           81 ESDLVLAERRIKECNFELACKEKQLELVRKRIGECECELQLKEGELNLVKKSVEEWLEKLDLKMKEVGLVEKSNDKSLVD  160 (1060)
Q Consensus        81 e~~~~~~~~~~ee~~~el~~Kek~l~~~r~~i~Ec~~El~~ke~~L~~~~~~i~e~~~~~~lK~kel~~~~~~~~~~~~~  160 (1060)
                      |+..-..++..+.|..++.-++.......+.|++-.-...+-+..+..+...|++...+-+-.--|++...++++.-.+.
T Consensus       273 W~~V~~~~~ql~~~~~~i~~~qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re  352 (1074)
T KOG0250|consen  273 WAWVNEVERQLNNQEEEIKKKQEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRRE  352 (1074)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Confidence            33333334444444444444443333333333333333333333444444444444444444555566666655544444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH-HHHHHhhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhh
Q 001522          161 QRRLENLIKDFCEQIELKEKDLRKIRSSIEECEKEL-VMKEKHASSLQSLIEDYAEELESKEKLYDEIKKSIIQCETKLD  239 (1060)
Q Consensus       161 ~~~~e~~~~~~~~ele~keke~~~~~k~Ie~~~kel-~~Ke~~~~~~e~~ie~~~~ELE~Kek~~e~~~ke~e~~~k~l~  239 (1060)
                      -..++..+.+++..+..+.+..+...+.|....+++ ..-...+..++..++-+..|+|--+-++..++.+...+..++.
T Consensus       353 ~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~  432 (1074)
T KOG0250|consen  353 VNDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAK  432 (1074)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455677888899999999999999999999888887 4456666666666666666666666677777777777777777


Q ss_pred             hhHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 001522          240 CKKKELELTQTSIIELSLELHLEEEKLES  268 (1060)
Q Consensus       240 ~k~kEl~~~e~~i~e~~~ele~kEk~~e~  268 (1060)
                      ...+++..+++.|....+.++..-..+..
T Consensus       433 ~~~ee~~~i~~~i~~l~k~i~~~~~~l~~  461 (1074)
T KOG0250|consen  433 EEEEEKEHIEGEILQLRKKIENISEELKD  461 (1074)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77777777777777777776666544443

>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=96.87  E-value=2.6  Score=54.15  Aligned_cols=16  Identities=38%  Similarity=0.349  Sum_probs=6.5

Q ss_pred             HHHHHHHHHHHHHHHH
Q 001522          314 CIEKRSQELTLKEKQL  329 (1060)
Q Consensus       314 ~ie~r~kELe~KEkql  329 (1060)
                      .++.+.+++......+
T Consensus       563 ~le~~~~~l~~~~~~~  578 (908)
T COG0419         563 QLEDRLQELKELLEEL  578 (908)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            3334444444444333

>PHA02562 46 endonuclease subunit; Provisional

Probab=96.76  E-value=1.5  Score=52.58  Aligned_cols=10  Identities=40%  Similarity=0.607  Sum_probs=5.7

Q ss_pred             CCchhhHHHh
Q 001522          533 CDPASLVLDA  542 (1060)
Q Consensus       533 sDPAklVLDa  542 (1060)
                      .+|.-++||-
T Consensus       495 ~~~~~lilDE  504 (562)
T PHA02562        495 VDTNLLILDE  504 (562)
T ss_pred             CCcCeEEEec
Confidence            4566666653

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=96.66  E-value=2.6  Score=51.35  Aligned_cols=16  Identities=19%  Similarity=0.405  Sum_probs=7.4

Q ss_pred             HHHHHHHHHHHHHHHH
Q 001522          427 LEIKERKFEERVKEFE  442 (1060)
Q Consensus       427 Le~KekefE~rvKE~E  442 (1060)
                      |.....++...+.-++
T Consensus       436 l~~EkQeL~~yi~~Le  451 (546)
T PF07888_consen  436 LQEEKQELLEYIERLE  451 (546)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            3344444444444444

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]

Probab=96.53  E-value=4.2  Score=52.12  Aligned_cols=52  Identities=19%  Similarity=0.175  Sum_probs=31.9

Q ss_pred             HHHHHHHhHHHHHHhHHHhHHHHHHhhhHHHHHHhhHHHHHHHhhhhhhhhhHHH
Q 001522          342 EFEEKENELISVEKLIDKCSEELELKKKHLCVIENSAAELSDECESNELELDLIQ  396 (1060)
Q Consensus       342 e~e~k~keL~s~~K~ie~~~kELe~kekqle~ie~~~kel~~e~EsKeKele~~~  396 (1060)
                      +...++.++.+.--++.....|+..+++.+   |..-+.+...++..+-.++..+
T Consensus       443 e~~~r~~~~~~~~~~~k~~~del~~~Rk~l---WREE~~l~~~i~~~~~dl~~~~  494 (1200)
T KOG0964|consen  443 ETKGRMEEFDAENTELKRELDELQDKRKEL---WREEKKLRSLIANLEEDLSRAE  494 (1200)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence            555666666666666677777888888888   6554555444444444444333

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=96.46  E-value=5.1  Score=52.30  Aligned_cols=76  Identities=16%  Similarity=0.178  Sum_probs=38.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhh
Q 001522          163 RLENLIKDFCEQIELKEKDLRKIRSSIEECEKELVMKEKHASSLQSLIEDYAEELESKEKLYDEIKKSIIQCETKL  238 (1060)
Q Consensus       163 ~~e~~~~~~~~ele~keke~~~~~k~Ie~~~kel~~Ke~~~~~~e~~ie~~~~ELE~Kek~~e~~~ke~e~~~k~l  238 (1060)
                      .++..+.++.++|.-..+++-..+.++++..-+|.--........+.++++-.-|......+++.+-.|......|
T Consensus       476 ~~~~e~~~~ekel~~~~~~~n~~~~e~~vaesel~~L~~~~~~~~~~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l  551 (1293)
T KOG0996|consen  476 GIREEIEKLEKELMPLLKQVNEARSELDVAESELDILLSRHETGLKKVEELKGKLLASSESLKEKKTELDDLKEEL  551 (1293)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            3555666666667777777767777776666666653333333333333343344443333333333333333333

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=96.45  E-value=5.3  Score=52.35  Aligned_cols=52  Identities=21%  Similarity=0.345  Sum_probs=33.0

Q ss_pred             HHHHhHHHHHHhhhhhH-HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Q 001522           48 HLDISMKSLEKQSNDAD-SKIRLLDQRAKEIESKESDLVLAERRIKECNFELA   99 (1060)
Q Consensus        48 h~~s~~~~~~~~~~~~~-~~~~~le~r~ke~e~ke~~~~~~~~~~ee~~~el~   99 (1060)
                      -++++...+..+..++. +...++-...++++.+..+.+....+.+..+++++
T Consensus       469 eL~e~i~~lk~~~~el~~~q~~l~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~  521 (1317)
T KOG0612|consen  469 ELEETIEKLKSEESELQREQKALLQHEQKEVEEKLSEEEAKKRKLEALVRQLE  521 (1317)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46667777766666666 45556666677777777766666555555544443

>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex

Probab=96.38  E-value=4.2  Score=50.47  Aligned_cols=33  Identities=15%  Similarity=0.232  Sum_probs=17.9

Q ss_pred             HHHHHHhhhhHHHHHHHHHHHHHhhhhhHHHHH
Q 001522          196 LVMKEKHASSLQSLIEDYAEELESKEKLYDEIK  228 (1060)
Q Consensus       196 l~~Ke~~~~~~e~~ie~~~~ELE~Kek~~e~~~  228 (1060)
                      |.+.+..+...++.+.-++.||.-|-..++++.
T Consensus       365 L~~Eqqr~~~~ed~lk~l~~eLqkks~eleEmt  397 (786)
T PF05483_consen  365 LTTEQQRLKKNEDQLKILTMELQKKSSELEEMT  397 (786)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHhhHHHHHHH
Confidence            333444445555555555566666666666554

Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function

Probab=96.34  E-value=4.3  Score=50.19  Aligned_cols=73  Identities=22%  Similarity=0.356  Sum_probs=50.2

Q ss_pred             HHHHHHHHHHHHHHHHH----HHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhh
Q 001522          166 NLIKDFCEQIELKEKDL----RKIRSSIEECEKELVMKEKHASSLQSLIEDYAEELESKEKLYDEIKKSIIQCETKL  238 (1060)
Q Consensus       166 ~~~~~~~~ele~keke~----~~~~k~Ie~~~kel~~Ke~~~~~~e~~ie~~~~ELE~Kek~~e~~~ke~e~~~k~l  238 (1060)
                      ..+.+|..+|+.....|    +..+........+...+-.++..+...+.+...|+..|+..+..+..+++...+..
T Consensus       408 ~rl~~L~~qWe~~R~pL~~e~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~~  484 (594)
T PF05667_consen  408 QRLVELAQQWEKHRAPLIEEYRRLKEKASNRESESKQKLQEIKELREEIKEIEEEIRQKEELYKQLVKELEKLPKDV  484 (594)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            44556666776654433    33333334444444456777788888889999999999999999888888877664

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=96.25  E-value=7.2  Score=51.87  Aligned_cols=68  Identities=21%  Similarity=0.336  Sum_probs=35.3

Q ss_pred             chhchHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhhHHHHH---HHHHHHHHHHHHhHHhHHHHHh
Q 001522           41 QWKDLEEHLDISMKSLEKQSNDADSKIRLLDQRAKEIESKESDLVLAE---RRIKECNFELACKEKQLELVRK  110 (1060)
Q Consensus        41 qw~~le~h~~s~~~~~~~~~~~~~~~~~~le~r~ke~e~ke~~~~~~~---~~~ee~~~el~~Kek~l~~~r~  110 (1060)
                      +|+++-+.++.-.+.+......+.+++..++++-..++..-  ++.+.   .+..+...+++.++.++..+-.
T Consensus       303 ~~~e~~~~~~~~~~~~~~~l~~~~~~L~~i~~~~~~ye~~~--i~~~~~~~~~l~~~~~~~~~l~~~~~~Lt~  373 (1201)
T PF12128_consen  303 EIKELRDELNKELSALNADLARIKSELDEIEQQKKDYEDAD--IEQLIARVDQLPEWRNELENLQEQLDLLTS  373 (1201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--HHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence            46666666666666655555555566666666555554321  22222   2223555555655555555443

>PRK04863 mukB cell division protein MukB; Provisional

Probab=96.01  E-value=10  Score=51.52  Aligned_cols=41  Identities=15%  Similarity=0.190  Sum_probs=28.0

Q ss_pred             CChHHHhHhhHHHHHHhHHHHHHhhh-cCCccccchHHHHHHHHHH
Q 001522          863 NSSDAKVKAMDFEVNALTFLIECFKE-NKLESSLLIENIKQRIVQL  907 (1060)
Q Consensus       863 nS~~aq~eA~~KEl~ALraVIKCIEe-hKLEse~p~~~LkkRI~qL  907 (1060)
                      .++....+.++.++..++..|+--+. +.    .+.+.+-..|...
T Consensus      1207 ~~p~et~e~Le~ei~rl~~~L~e~Er~L~----~s~eEVa~~l~~r 1248 (1486)
T PRK04863       1207 DDPVEAIEQMEIELSRLTEELTSREQKLA----ISSESVANIIRKT 1248 (1486)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHhC----CCHHHHHHHHHHH
Confidence            45666778899999999999988877 33    4454444444433

>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]

Probab=95.83  E-value=9.4  Score=49.60  Aligned_cols=34  Identities=24%  Similarity=0.383  Sum_probs=27.1

Q ss_pred             ccchhhHHHHHHHHHhhcCCCCCChHHHHHHHHH
Q 001522          604 EDNSLEVLGFLHLLAAYGLGPSFDGIELESLLDI  637 (1060)
Q Consensus       604 ~en~levLGFL~lla~ygL~s~FD~dEll~L~~~  637 (1060)
                      |+-.+.||+.|.-+-.|.=+|-|=-||+-.-++.
T Consensus      1055 GEKTvAaLALLFaihsy~PaPFfvlDEiDAALDn 1088 (1141)
T KOG0018|consen 1055 GEKTVAALALLFAIHSYKPAPFFVLDEIDAALDN 1088 (1141)
T ss_pred             cHHHHHHHHHHHHhccCCCCCceehhhHHHHhhh
Confidence            5666888888888888899999988888866654

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=95.81  E-value=11  Score=50.19  Aligned_cols=55  Identities=18%  Similarity=0.294  Sum_probs=39.9

Q ss_pred             HHHHHhHHHHHHhhhchhheecchhchHHHHHHhHHHHHHhhhhhHHHHHHHHHH
Q 001522           19 EILRRSYDLAHAQANSVLNFTVQWKDLEEHLDISMKSLEKQSNDADSKIRLLDQR   73 (1060)
Q Consensus        19 e~~~~~~~~~~~qas~~l~~~lqw~~le~h~~s~~~~~~~~~~~~~~~~~~le~r   73 (1060)
                      +.+|..++.+..+-+++..+..|=+.|-.++..+...++.....+..+...+...
T Consensus       242 ~~~r~~~~~l~~~~~~l~~~~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~  296 (1201)
T PF12128_consen  242 EKVRPEFDKLQQQYRQLQALEQQLCHLHAELNADEQQLEQEQPELKEELNELNEE  296 (1201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            6677788888888888888888888777777777777766666665555444444

>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex

Probab=95.79  E-value=7.8  Score=48.30  Aligned_cols=24  Identities=17%  Similarity=0.296  Sum_probs=13.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh
Q 001522          164 LENLIKDFCEQIELKEKDLRKIRS  187 (1060)
Q Consensus       164 ~e~~~~~~~~ele~keke~~~~~k  187 (1060)
                      ++.+++-++.+|..+..+++++-+
T Consensus       375 ~ed~lk~l~~eLqkks~eleEmtk  398 (786)
T PF05483_consen  375 NEDQLKILTMELQKKSSELEEMTK  398 (786)
T ss_pred             hHHHHHHHHHHHHHhhHHHHHHHH
Confidence            445555555566666655555443

Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=95.46  E-value=11  Score=47.67  Aligned_cols=88  Identities=26%  Similarity=0.285  Sum_probs=50.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh---hhHHHHHHHhHHHHHHhHHHhHHHHHHhhhHHHHHHh----hH
Q 001522          306 REFNGIRKCIEKRSQELTLKEKQLKCVQESLEGC---RNEFEEKENELISVEKLIDKCSEELELKKKHLCVIEN----SA  378 (1060)
Q Consensus       306 kEl~~~~k~ie~r~kELe~KEkql~~~~ke~~~~---~~e~e~k~keL~s~~K~ie~~~kELe~kekqle~ie~----~~  378 (1060)
                      -+++++.+.++.++.|...+.-++.+.+..+.-.   ..++..+.|...+.-+.-..+..+|+....+-+.|-.    .+
T Consensus       472 t~ie~~~~q~e~~isei~qlqarikE~q~kl~~l~~Ekq~l~~qlkq~q~a~~~~~~~~s~L~aa~~~ke~irq~ikdql  551 (1118)
T KOG1029|consen  472 TEIEEVTKQRELMISEIDQLQARIKELQEKLQKLAPEKQELNHQLKQKQSAHKETTQRKSELEAARRKKELIRQAIKDQL  551 (1118)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhccCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4567777777777777766666666655554332   3455566665555555555666677766666554443    33


Q ss_pred             HHHHHHhhhhhhhhh
Q 001522          379 AELSDECESNELELD  393 (1060)
Q Consensus       379 kel~~e~EsKeKele  393 (1060)
                      .++.++-+||..+.+
T Consensus       552 delskE~esk~~eid  566 (1118)
T KOG1029|consen  552 DELSKETESKLNEID  566 (1118)
T ss_pred             HHHHHHHHHHHHhhh
Confidence            444455555544444

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=95.20  E-value=11  Score=46.25  Aligned_cols=35  Identities=26%  Similarity=0.295  Sum_probs=16.5

Q ss_pred             hhhhhHHHHHHHhHHHHHHhHHHhHHHHHHhhhHH
Q 001522          337 EGCRNEFEEKENELISVEKLIDKCSEELELKKKHL  371 (1060)
Q Consensus       337 ~~~~~e~e~k~keL~s~~K~ie~~~kELe~kekql  371 (1060)
                      +....+++.-..++..+.+++...-+|-+..++++
T Consensus       367 e~~k~~ie~L~~el~~~e~~lqEer~E~qkL~~ql  401 (546)
T PF07888_consen  367 EADKDEIEKLSRELQMLEEHLQEERMERQKLEKQL  401 (546)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33334444444455455555544444444444444

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]

Probab=95.08  E-value=14  Score=46.82  Aligned_cols=43  Identities=30%  Similarity=0.303  Sum_probs=31.5

Q ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 001522          175 IELKEKDLRKIRSSIEECEKELVMKEKHASSLQSLIEDYAEEL  217 (1060)
Q Consensus       175 le~keke~~~~~k~Ie~~~kel~~Ke~~~~~~e~~ie~~~~EL  217 (1060)
                      |+.....|....+.|++.+++|+.|...|.-.-+..+++|+++
T Consensus       254 i~E~d~~lq~sak~ieE~m~qlk~kns~L~~ElSqkeelVk~~  296 (1265)
T KOG0976|consen  254 IEEQDMDLQASAKEIEEKMRQLKAKNSVLGDELSQKEELVKEL  296 (1265)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence            5555666777778888888888888777777667777776654

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=94.84  E-value=3.2  Score=46.03  Aligned_cols=105  Identities=22%  Similarity=0.291  Sum_probs=49.3

Q ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHHHH--HHHhhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhhHHHHH
Q 001522          169 KDFCEQIELKEKDLRKIRSSIEECEKELVM--KEKHASSLQSLIEDYAEELESKEKLYDEIKKSIIQCETKLDCKKKELE  246 (1060)
Q Consensus       169 ~~~~~ele~keke~~~~~k~Ie~~~kel~~--Ke~~~~~~e~~ie~~~~ELE~Kek~~e~~~ke~e~~~k~l~~k~kEl~  246 (1060)
                      .++..+....+.++.+++.-|..-...+..  .++.++.+..+|.-.-..+.+.+.++.....+++...+++......+.
T Consensus        55 e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~  134 (239)
T COG1579          55 EDLENQVSQLESEIQEIRERIKRAEEKLSAVKDERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLE  134 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333344444444444444444444444422  245555555555444444455555555555555555555555555555


Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 001522          247 LTQTSIIELSLELHLEEEKLESLQRIV  273 (1060)
Q Consensus       247 ~~e~~i~e~~~ele~kEk~~e~~~k~i  273 (1060)
                      ..++.+.+....++..-..+......+
T Consensus       135 ~~e~~~~e~~~~~e~e~~~i~e~~~~~  161 (239)
T COG1579         135 RLEKNLAEAEARLEEEVAEIREEGQEL  161 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555555555444444433333333333

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=94.79  E-value=14  Score=45.38  Aligned_cols=20  Identities=10%  Similarity=-0.039  Sum_probs=10.8

Q ss_pred             hhhhhhhhhhHhhHHHHHHH
Q 001522          117 CELQLKEGELNLVKKSVEEW  136 (1060)
Q Consensus       117 ~El~~ke~~L~~~~~~i~e~  136 (1060)
                      +.+-+.+-.++..-+.|+..
T Consensus       154 k~ll~~~~~~G~a~~~le~~  173 (569)
T PRK04778        154 KSLLANRFSFGPALDELEKQ  173 (569)
T ss_pred             HHHHhcCccccchHHHHHHH
Confidence            55555555555555555433

>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]

Probab=94.78  E-value=19  Score=46.74  Aligned_cols=33  Identities=21%  Similarity=0.402  Sum_probs=24.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001522          412 QFHSLKEALDERWQDLEIKERKFEERVKEFELR  444 (1060)
Q Consensus       412 efeskEk~le~r~kELe~KekefE~rvKE~Elk  444 (1060)
                      .|.+-...+..|..||.-=.+.+.+-+..++++
T Consensus       981 nfseQre~L~~R~eELd~s~~sI~eLi~vLdqr 1013 (1200)
T KOG0964|consen  981 NFSEQRESLKKRQEELDRSKDSILELITVLDQR 1013 (1200)
T ss_pred             HHHHHHHHHHHHHHHhccchhHHHHHHHHHHHh
Confidence            355556677888888888888888888888764

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=94.76  E-value=6.5  Score=43.65  Aligned_cols=19  Identities=16%  Similarity=0.198  Sum_probs=7.6

Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 001522          302 ELKEREFNGIRKCIEKRSQ  320 (1060)
Q Consensus       302 e~KekEl~~~~k~ie~r~k  320 (1060)
                      ...++.|.+.+..++..+.
T Consensus       134 ~~~e~~~~e~~~~~e~e~~  152 (239)
T COG1579         134 ERLEKNLAEAEARLEEEVA  152 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3333444444444444333

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=94.72  E-value=9  Score=42.80  Aligned_cols=84  Identities=24%  Similarity=0.269  Sum_probs=51.0

Q ss_pred             HHHHHHhhhhhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhHHhHHHHHhhhhhhhhhhhhhhhhhHhhHHH
Q 001522           53 MKSLEKQSNDADSKIRLLDQRAKEIESKESDLVLAERRIKECNFELACKEKQLELVRKRIGECECELQLKEGELNLVKKS  132 (1060)
Q Consensus        53 ~~~~~~~~~~~~~~~~~le~r~ke~e~ke~~~~~~~~~~ee~~~el~~Kek~l~~~r~~i~Ec~~El~~ke~~L~~~~~~  132 (1060)
                      +..+-+++-..-.|-|.||..++.++..-..+....  -.++..--..=+.++..+|..|+.+..|-..-+.+++-....
T Consensus         6 L~~LNdRla~YIekVr~LE~~N~~Le~~i~~~~~~~--~~~~~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e   83 (312)
T PF00038_consen    6 LQSLNDRLASYIEKVRFLEQENKRLESEIEELREKK--GEEVSRIKEMYEEELRELRRQIDDLSKEKARLELEIDNLKEE   83 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcc--cccCcccccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHH
Confidence            345556666666777888888877665544444332  223333344456778888888888888877777777777777


Q ss_pred             HHHHHH
Q 001522          133 VEEWLE  138 (1060)
Q Consensus       133 i~e~~~  138 (1060)
                      +.+...
T Consensus        84 ~~~~r~   89 (312)
T PF00038_consen   84 LEDLRR   89 (312)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            775544

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

Probab=94.52  E-value=14  Score=44.11  Aligned_cols=65  Identities=17%  Similarity=0.259  Sum_probs=33.8

Q ss_pred             HHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhhHHH
Q 001522          180 KDLRKIRSSIEECEKELVMKEKHASSLQSLIEDYAEELESKEKLYDEIKKSIIQCETKLDCKKKE  244 (1060)
Q Consensus       180 ke~~~~~k~Ie~~~kel~~Ke~~~~~~e~~ie~~~~ELE~Kek~~e~~~ke~e~~~k~l~~k~kE  244 (1060)
                      ++++.+++.|+...+++..-.+.+..++++|..+-.++..-+.++-+-...+...+++|......
T Consensus        38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~  102 (420)
T COG4942          38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNAR  102 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHH
Confidence            44555555555555555555555555555555555555555555554444444444444433333

>PRK04863 mukB cell division protein MukB; Provisional

Probab=94.51  E-value=28  Score=47.61  Aligned_cols=20  Identities=15%  Similarity=0.242  Sum_probs=14.1

Q ss_pred             hHHHHHHHHHHHHhhhhccc
Q 001522          897 IENIKQRIVQLEMAKADCRR  916 (1060)
Q Consensus       897 ~~~LkkRI~qLeK~kaekKR  916 (1060)
                      ++.|...|..+.....++-+
T Consensus      1213 ~e~Le~ei~rl~~~L~e~Er 1232 (1486)
T PRK04863       1213 IEQMEIELSRLTEELTSREQ 1232 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            46777777777777776654

>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]

Probab=94.40  E-value=19  Score=45.13  Aligned_cols=183  Identities=22%  Similarity=0.204  Sum_probs=98.2

Q ss_pred             HHHHHHHHHHHHHHHHHH-------HHHHhhHHHHHHHHHHHHH--hhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 001522          165 ENLIKDFCEQIELKEKDL-------RKIRSSIEECEKELVMKEK--HASSLQSLIEDYAEELESKEKLYDEIKKSIIQCE  235 (1060)
Q Consensus       165 e~~~~~~~~ele~keke~-------~~~~k~Ie~~~kel~~Ke~--~~~~~e~~ie~~~~ELE~Kek~~e~~~ke~e~~~  235 (1060)
                      ..+.++++-.+-..||.+       |+.++++-...++|..+--  .|..-...|.+++.|=|-.-|+.-..    .-.=
T Consensus       401 ssl~~e~~QRva~lEkKvqa~~kERDalr~e~kslk~ela~~l~~DeLaEkdE~I~~lm~EGEkLSK~ql~q----s~iI  476 (961)
T KOG4673|consen  401 SSLREEYHQRVATLEKKVQALTKERDALRREQKSLKKELAAALLKDELAEKDEIINQLMAEGEKLSKKQLAQ----SAII  476 (961)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHH----HHHH
Confidence            344455555544444444       3444444444444444321  22223334555555544444433322    1222


Q ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001522          236 TKLDCKKKELELTQTSIIELSLELHLEEEKLESLQRIVRLRENELDSKEEKLDAMKEEMKKYFNDIELKEREFNGIRKCI  315 (1060)
Q Consensus       236 k~l~~k~kEl~~~e~~i~e~~~ele~kEk~~e~~~k~ie~r~~el~~~~~e~~~~e~~~~~~~ke~e~KekEl~~~~k~i  315 (1060)
                      |+|-.+.|+-+-.....++++++|++.+..+..+.+.-+.-++.+-.-..+...+..+.+...-.....-.+|+++-..+
T Consensus       477 kKLRAk~ke~etl~~K~ge~i~~L~sE~~~lk~il~~Kee~Ek~~~E~I~k~~ae~~rq~~~~~~sr~~~~~le~~~~a~  556 (961)
T KOG4673|consen  477 KKLRAKIKEAETLEEKKGELITKLQSEENKLKSILRDKEETEKLLQETIEKHQAELTRQKDYYSNSRALAAALEAQALAE  556 (961)
T ss_pred             HHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence            55666667767677777888888988888888877666555555544333444444455555555555555666655555


Q ss_pred             HHHHHHHHH---HHHHHHHHHhhhhhhhhHHHHHHHhHHHH
Q 001522          316 EKRSQELTL---KEKQLKCVQESLEGCRNEFEEKENELISV  353 (1060)
Q Consensus       316 e~r~kELe~---KEkql~~~~ke~~~~~~e~e~k~keL~s~  353 (1060)
                      +--..++.+   |+..++  +.+.+.....+.-++.+|...
T Consensus       557 qat~d~a~~Dlqk~nrlk--Qdear~~~~~lvqqv~dLR~~  595 (961)
T KOG4673|consen  557 QATNDEARSDLQKENRLK--QDEARERESMLVQQVEDLRQT  595 (961)
T ss_pred             HHhhhhhhhhHHHHhhhh--hhHHHHHHHHHHHHHHHHHHH
Confidence            554444444   333333  556666666777776666543

>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]

Probab=94.37  E-value=19  Score=45.08  Aligned_cols=38  Identities=24%  Similarity=0.275  Sum_probs=28.9

Q ss_pred             HHHHHHHHhhhhhHHHHHHHHHHHHhhhhhhHHHHHHH
Q 001522          211 EDYAEELESKEKLYDEIKKSIIQCETKLDCKKKELELT  248 (1060)
Q Consensus       211 e~~~~ELE~Kek~~e~~~ke~e~~~k~l~~k~kEl~~~  248 (1060)
                      ++++.-+-..||.|....++-+-.+++++..++||...
T Consensus       405 ~e~~QRva~lEkKvqa~~kERDalr~e~kslk~ela~~  442 (961)
T KOG4673|consen  405 EEYHQRVATLEKKVQALTKERDALRREQKSLKKELAAA  442 (961)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Confidence            56667777777888888888888888887778887743

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=94.02  E-value=18  Score=45.82  Aligned_cols=26  Identities=27%  Similarity=0.443  Sum_probs=11.9

Q ss_pred             HHHHHHHHHHHHHhhhhhHHHHHHHH
Q 001522          206 LQSLIEDYAEELESKEKLYDEIKKSI  231 (1060)
Q Consensus       206 ~e~~ie~~~~ELE~Kek~~e~~~ke~  231 (1060)
                      +|.||..+--||..||.++..+..++
T Consensus       550 lE~E~~~lr~elk~kee~~~~~e~~~  575 (697)
T PF09726_consen  550 LESELKKLRRELKQKEEQIRELESEL  575 (697)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444444444444

; GO: 0016021 integral to membrane

>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=93.82  E-value=28  Score=44.95  Aligned_cols=22  Identities=27%  Similarity=0.440  Sum_probs=18.7

Q ss_pred             chHHHHHHHHHHHHhhhhcccc
Q 001522          896 LIENIKQRIVQLEMAKADCRRH  917 (1060)
Q Consensus       896 p~~~LkkRI~qLeK~kaekKR~  917 (1060)
                      ..|-|+..|.+||..+++.|-+
T Consensus      1027 tmdaLq~di~~lEsek~elKqr 1048 (1243)
T KOG0971|consen 1027 TMDALQADIDQLESEKAELKQR 1048 (1243)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHH
Confidence            3689999999999999988744

>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]

Probab=93.26  E-value=24  Score=42.57  Aligned_cols=32  Identities=16%  Similarity=0.305  Sum_probs=21.4

Q ss_pred             HHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhh
Q 001522          207 QSLIEDYAEELESKEKLYDEIKKSIIQCETKL  238 (1060)
Q Consensus       207 e~~ie~~~~ELE~Kek~~e~~~ke~e~~~k~l  238 (1060)
                      ..++.+..++||-+=.+|+.....|-..+.++
T Consensus       402 ~leaq~~~~slek~~~~~~sl~~~i~~~~~~i  433 (622)
T COG5185         402 KLEAQGIFKSLEKTLRQYDSLIQNITRSRSQI  433 (622)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcccHHHH
Confidence            34466777777777778887776666554443

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function

Probab=93.05  E-value=28  Score=42.60  Aligned_cols=25  Identities=32%  Similarity=0.349  Sum_probs=14.2

Q ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHH
Q 001522          249 QTSIIELSLELHLEEEKLESLQRIV  273 (1060)
Q Consensus       249 e~~i~e~~~ele~kEk~~e~~~k~i  273 (1060)
                      ......|..+++..++.++....++
T Consensus       210 ~~~~~~~~~~leeae~~l~~L~~e~  234 (522)
T PF05701_consen  210 EQDAEEWEKELEEAEEELEELKEEL  234 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445555555666666666655555

Several sequences in this family are described as being myosin heavy chain-like.

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function

Probab=92.84  E-value=29  Score=42.37  Aligned_cols=52  Identities=23%  Similarity=0.347  Sum_probs=25.2

Q ss_pred             HHHHHHHHHHHHHHhhhhhhhhHHHHHHHhHHHHHHhHHHhHHHHHHhhhHH
Q 001522          320 QELTLKEKQLKCVQESLEGCRNEFEEKENELISVEKLIDKCSEELELKKKHL  371 (1060)
Q Consensus       320 kELe~KEkql~~~~ke~~~~~~e~e~k~keL~s~~K~ie~~~kELe~kekql  371 (1060)
                      ..|.....+...+...+++...+++.-..++...+.....-...+.+.+.++
T Consensus       295 ~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL  346 (522)
T PF05701_consen  295 KELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAEL  346 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHH
Confidence            3444444445555555555555555555555555544443333333333333

Several sequences in this family are described as being myosin heavy chain-like.

>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]

Probab=92.67  E-value=49  Score=44.48  Aligned_cols=48  Identities=13%  Similarity=0.099  Sum_probs=24.7

Q ss_pred             hhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhHHhHHHHH
Q 001522           62 DADSKIRLLDQRAKEIESKESDLVLAERRIKECNFELACKEKQLELVR  109 (1060)
Q Consensus        62 ~~~~~~~~le~r~ke~e~ke~~~~~~~~~~ee~~~el~~Kek~l~~~r  109 (1060)
                      .+.+.-..+..=+..++..++.|+.+..-..-.-.++.+.++.+.+.+
T Consensus       699 ~i~s~p~~~~~~~~~l~k~~k~~e~l~~~~~~~~~~~~l~~~~i~e~~  746 (1294)
T KOG0962|consen  699 KIDSAPDKLEEAEVELSKEEKIFEILLKLKPTFGSIIKLIDKEIPELE  746 (1294)
T ss_pred             HHhccchhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHH
Confidence            333333444444555555666666555555544445555555555555

>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease

Probab=92.63  E-value=17  Score=39.14  Aligned_cols=25  Identities=28%  Similarity=0.562  Sum_probs=10.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001522          283 KEEKLDAMKEEMKKYFNDIELKERE  307 (1060)
Q Consensus       283 ~~~e~~~~e~~~~~~~ke~e~KekE  307 (1060)
                      ...+++.+..++..+-.-+..|+++
T Consensus       169 ~~~~~~~l~~ei~~L~~klkEKer~  193 (194)
T PF15619_consen  169 AQEEVKSLQEEIQRLNQKLKEKERE  193 (194)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            3333444444444444444444443

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD

Probab=92.52  E-value=35  Score=42.52  Aligned_cols=27  Identities=11%  Similarity=0.197  Sum_probs=18.9

Q ss_pred             HHHhhhchhheecchhchHHHHHHhHHH
Q 001522           28 AHAQANSVLNFTVQWKDLEEHLDISMKS   55 (1060)
Q Consensus        28 ~~~qas~~l~~~lqw~~le~h~~s~~~~   55 (1060)
                      +.+-.+++|.+.+ -..|..|++.....
T Consensus       171 l~~Ai~~LlGl~~-~~~L~~dl~~~~~~  197 (650)
T TIGR03185       171 LKEAIEVLLGLDL-IDRLAGDLTNVLRR  197 (650)
T ss_pred             HHHHHHHHhCcHH-HHHHHHHHHHHHHH
Confidence            5555677778877 77778887775544

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.

>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]

Probab=91.16  E-value=58  Score=42.16  Aligned_cols=114  Identities=21%  Similarity=0.225  Sum_probs=62.4

Q ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Q 001522          175 IELKEKDLRKIRSSIEECEKELVMKEKHASSLQSLIEDYAEELESKEKLYDEIKKSIIQCETKLDCKKKELELTQTSIIE  254 (1060)
Q Consensus       175 le~keke~~~~~k~Ie~~~kel~~Ke~~~~~~e~~ie~~~~ELE~Kek~~e~~~ke~e~~~k~l~~k~kEl~~~e~~i~e  254 (1060)
                      +..-..+.+.-+..|++.+++--..+.....+..-+.+++.+=-..-.+++.+++.+++-++-+....++.....+++++
T Consensus       398 l~a~r~q~eka~~~~ee~e~~~l~~e~ry~klkek~t~l~~~h~~lL~K~~di~kQle~~~~s~~~~~~~~~~L~d~le~  477 (980)
T KOG0980|consen  398 LLASRTQLEKAQVLVEEAENKALAAENRYEKLKEKYTELRQEHADLLRKYDDIQKQLESAEQSIDDVEEENTNLNDQLEE  477 (980)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence            33444555555555666666655555555555555555544433334456666666666666665555555555566666


Q ss_pred             HHHHHhhHHHHHHHHHHHHHHHHhhhhhHHHHHH
Q 001522          255 LSLELHLEEEKLESLQRIVRLRENELDSKEEKLD  288 (1060)
Q Consensus       255 ~~~ele~kEk~~e~~~k~ie~r~~el~~~~~e~~  288 (1060)
                      ..++...-+.+.++..+-++.-+.++..+..+++
T Consensus       478 ~~~~~~~~~~K~e~~~~~le~l~~El~~l~~e~~  511 (980)
T KOG0980|consen  478 LQRAAGRAETKTESQAKALESLRQELALLLIELE  511 (980)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            6666555555555555555544444444333333

>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=91.13  E-value=62  Score=42.45  Aligned_cols=44  Identities=20%  Similarity=0.258  Sum_probs=23.1

Q ss_pred             hhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhhHHHHH
Q 001522          203 ASSLQSLIEDYAEELESKEKLYDEIKKSIIQCETKLDCKKKELE  246 (1060)
Q Consensus       203 ~~~~e~~ie~~~~ELE~Kek~~e~~~ke~e~~~k~l~~k~kEl~  246 (1060)
                      +..+++++++..+.+|++.+.-+.+++.|+.-++.|.....+|.
T Consensus       313 ~~~~~~~v~~~~~~le~lk~~~~~rq~~i~~~~k~i~~~q~el~  356 (1072)
T KOG0979|consen  313 LKEIEDEVEEKKNKLESLKKAAEKRQKRIEKAKKMILDAQAELQ  356 (1072)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            44445555555555555555555555555555555544444443

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=90.78  E-value=21  Score=36.66  Aligned_cols=64  Identities=28%  Similarity=0.355  Sum_probs=31.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHhhhhhHHHHH
Q 001522          165 ENLIKDFCEQIELKEKDLRKIRSSIEECEKELVMKEKHA---SSLQSLIEDYAEELESKEKLYDEIK  228 (1060)
Q Consensus       165 e~~~~~~~~ele~keke~~~~~k~Ie~~~kel~~Ke~~~---~~~e~~ie~~~~ELE~Kek~~e~~~  228 (1060)
                      +..|..|...+...+.+++.+...+......+...+++.   +.+.+.|.-+-++|+.-++.+....
T Consensus        34 E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~LEeele~ae~~L~e~~  100 (143)
T PF12718_consen   34 EQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLLEEELEEAEKKLKETT  100 (143)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence            445555555555666666666655555555555544332   2333334444444444444444333

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site

Probab=90.77  E-value=50  Score=40.76  Aligned_cols=69  Identities=20%  Similarity=0.296  Sum_probs=37.3

Q ss_pred             HHHHHhhHHHHHHHhhhhhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001522          371 LCVIENSAAELSDECESNELELDLIQTMAIGYLKQLKEKEKQFHSLKEALDERWQDLEIKERKFEERVKEFEL  443 (1060)
Q Consensus       371 le~ie~~~kel~~e~EsKeKele~~~~~~~~~~ke~e~kekefeskEk~le~r~kELe~KekefE~rvKE~El  443 (1060)
                      +..+...+..+...++....-+-..+..+.....++.    .++.....+...+..|...|+....++..+..
T Consensus       353 l~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~----~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~  421 (560)
T PF06160_consen  353 LKELEKRYEDLEERIEEQQVPYSEIQEELEEIEEQLE----EIEEEQEEINESLQSLRKDEKEAREKLQKLKQ  421 (560)
T ss_pred             HHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333444444444445444444444444433333333    33344556677777777778777777777764

EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=90.76  E-value=58  Score=41.48  Aligned_cols=60  Identities=12%  Similarity=0.135  Sum_probs=44.3

Q ss_pred             HHHHHHhhhhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 001522          213 YAEELESKEKLYDEIKKSIIQCETKLDCKKKELELTQTSIIELSLELHLEEEKLESLQRI  272 (1060)
Q Consensus       213 ~~~ELE~Kek~~e~~~ke~e~~~k~l~~k~kEl~~~e~~i~e~~~ele~kEk~~e~~~k~  272 (1060)
                      .-.+|..+.++.|+++..+-...+....-+.-+...|+.+.+-.+.....|+||...++.
T Consensus       458 lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~~~R~~lEkQL~eErk~  517 (697)
T PF09726_consen  458 LKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEERRQRASLEKQLQEERKA  517 (697)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345677777777777777777777776667777778888887777777778887776654

; GO: 0016021 integral to membrane

>PF15254 CCDC14: Coiled-coil domain-containing protein 14

Probab=90.71  E-value=26  Score=44.54  Aligned_cols=181  Identities=21%  Similarity=0.279  Sum_probs=113.6

Q ss_pred             HHHhHHHHHHhhhchhheecchhchHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Q 001522           21 LRRSYDLAHAQANSVLNFTVQWKDLEEHLDISMKSLEKQSNDADSKIRLLDQRAKEIESKESDLVLAERRIKECNFELAC  100 (1060)
Q Consensus        21 ~~~~~~~~~~qas~~l~~~lqw~~le~h~~s~~~~~~~~~~~~~~~~~~le~r~ke~e~ke~~~~~~~~~~ee~~~el~~  100 (1060)
                      +.|-+.++++= -|.|-.+.-=.|++.|...++--++-.---|+++.|.|+++.+|-|..++.-+-              
T Consensus       358 ~qRLitEvE~c-islLPav~g~tniq~EIALA~QplrsENaqLrRrLrilnqqlreqe~~~k~~~~--------------  422 (861)
T PF15254_consen  358 VQRLITEVEAC-ISLLPAVSGSTNIQVEIALAMQPLRSENAQLRRRLRILNQQLREQEKAEKTSGS--------------  422 (861)
T ss_pred             HHHHHHHHHHH-HHhhhhhhccccchhhhHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhcccCCC--------------
Confidence            45566677654 457777788889999999999999888888999999999999986665544321              


Q ss_pred             hHHhHHHHHhhhhhhhhhhhhhhhhhHhhHHHHHHHHHhhhhhhhhHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 001522          101 KEKQLELVRKRIGECECELQLKEGELNLVKKSVEEWLEKLDLKMKEVGLVEKSNDKSLVDQRRLENLIKDFCEQIELKEK  180 (1060)
Q Consensus       101 Kek~l~~~r~~i~Ec~~El~~ke~~L~~~~~~i~e~~~~~~lK~kel~~~~~~~~~~~~~~~~~e~~~~~~~~ele~kek  180 (1060)
                                  .+|..||-+-.. ||++                                  |..++++..+.++....
T Consensus       423 ------------~~~n~El~sLqS-lN~~----------------------------------Lq~ql~es~k~~e~lq~  455 (861)
T PF15254_consen  423 ------------QDCNLELFSLQS-LNMS----------------------------------LQNQLQESLKSQELLQS  455 (861)
T ss_pred             ------------cccchhhHHHHH-HHHH----------------------------------HHHHHHHHHHhHHHHHH
Confidence                        245555544332 3333                                  23455555555666555


Q ss_pred             HHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHh
Q 001522          181 DLRKIRSSIEECEKELVMKEKHASSLQSLIEDYAEELESKEKLYDEIKKSIIQCETKLDCKKKELELTQTSIIELSLELH  260 (1060)
Q Consensus       181 e~~~~~k~Ie~~~kel~~Ke~~~~~~e~~ie~~~~ELE~Kek~~e~~~ke~e~~~k~l~~k~kEl~~~e~~i~e~~~ele  260 (1060)
                      .-+++.|.|+....|              -..+.+.+.-|+.++.+-++.++-.-.++   +-|++...-.+..+.-.|+
T Consensus       456 kneellk~~e~q~~E--------------nk~~~~~~~ekd~~l~~~kq~~d~e~~ri---k~ev~eal~~~k~~q~kLe  518 (861)
T PF15254_consen  456 KNEELLKVIENQKEE--------------NKRLRKMFQEKDQELLENKQQFDIETTRI---KIEVEEALVNVKSLQFKLE  518 (861)
T ss_pred             hHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHhhHHHHHHHHHHH---HHHHHHHHHHHHHHhhhHH
Confidence            555555555544433              11245566666776766666666655555   5666666666666666666


Q ss_pred             hHHHHHHHHHHHHHHHHhhh
Q 001522          261 LEEEKLESLQRIVRLRENEL  280 (1060)
Q Consensus       261 ~kEk~~e~~~k~ie~r~~el  280 (1060)
                      .-|++-....-.+..|..++
T Consensus       519 ~sekEN~iL~itlrQrDaEi  538 (861)
T PF15254_consen  519 ASEKENQILGITLRQRDAEI  538 (861)
T ss_pred             HHHhhhhHhhhHHHHHHHHH
Confidence            66665555544554454444

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]

Probab=90.29  E-value=55  Score=40.49  Aligned_cols=127  Identities=20%  Similarity=0.226  Sum_probs=88.1

Q ss_pred             HHhHHHHHhhhhhhhhhhhhhhhhhHhhHHHHHHHHHhhhhhhhhHHHHHhhhhhhh-------HHHHHHHHHHHHHHHH
Q 001522          102 EKQLELVRKRIGECECELQLKEGELNLVKKSVEEWLEKLDLKMKEVGLVEKSNDKSL-------VDQRRLENLIKDFCEQ  174 (1060)
Q Consensus       102 ek~l~~~r~~i~Ec~~El~~ke~~L~~~~~~i~e~~~~~~lK~kel~~~~~~~~~~~-------~~~~~~e~~~~~~~~e  174 (1060)
                      +.++.-.|+.|+|-.++.-.-+.++.....++.+....++-+++++...+.++...+       .+..-+.+.++.|..+
T Consensus        91 e~El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e  170 (546)
T KOG0977|consen   91 EAELATARKLLDETARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDE  170 (546)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHH
Confidence            456777888888888888888888888888888887788888888877777665333       2334456777777777


Q ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhhHHHHH
Q 001522          175 IELKEKDLRKIRSSIEECEKELVMKEKHASSLQSLIEDYAEELESKEKLYDEIK  228 (1060)
Q Consensus       175 le~keke~~~~~k~Ie~~~kel~~Ke~~~~~~e~~ie~~~~ELE~Kek~~e~~~  228 (1060)
                      +..+.++..-++..|..-.++|+..---+...+-.+..+.++|.-....++...
T Consensus       171 ~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~~~h~~eI  224 (546)
T KOG0977|consen  171 LKRLKAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEELAFLKRIHKQEI  224 (546)
T ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccHHHH
Confidence            777777777777777777776655433333344445566666666666555443

>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF

Probab=90.28  E-value=53  Score=40.28  Aligned_cols=39  Identities=26%  Similarity=0.543  Sum_probs=23.4

Q ss_pred             chhhHHHHHHHhhhhhhhhhhhHHHhhhhcC-Cc-----hhhHHHhh
Q 001522          503 TGKNLQLLLNQHLQKHDLVFGEISHTLTKAC-DP-----ASLVLDAM  543 (1060)
Q Consensus       503 DgkgL~~~i~e~~k~~~~ir~Ei~~AL~~as-DP-----AklVLDai  543 (1060)
                      +|.+.+-|  +..-..+.|=++.|.+..-|+ ||     |++.|..|
T Consensus       223 eGrnir~~--e~~tgvd~iiddtp~~v~ls~fdp~rreia~~~l~~l  267 (514)
T TIGR03319       223 EGRNIRAL--ETLTGVDLIIDDTPEAVILSGFDPVRREIARMALEKL  267 (514)
T ss_pred             CcchHHHH--HHHhCceEEEcCCCCeEEecCCchHHHHHHHHHHHHH
Confidence            55666655  445556677777777755444 66     45555544

>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]

Probab=90.16  E-value=40  Score=38.70  Aligned_cols=9  Identities=56%  Similarity=0.597  Sum_probs=3.4

Q ss_pred             hhhhhhhhH
Q 001522          119 LQLKEGELN  127 (1060)
Q Consensus       119 l~~ke~~L~  127 (1060)
                      +.++|-+||
T Consensus        39 ~~ekRdeln   47 (294)
T COG1340          39 LAEKRDELN   47 (294)
T ss_pred             HHHHHHHHH
Confidence            333333333

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]

Probab=89.66  E-value=27  Score=36.04  Aligned_cols=79  Identities=15%  Similarity=0.178  Sum_probs=45.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhh
Q 001522          160 DQRRLENLIKDFCEQIELKEKDLRKIRSSIEECEKELVMKEKHASSLQSLIEDYAEELESKEKLYDEIKKSIIQCETKL  238 (1060)
Q Consensus       160 ~~~~~e~~~~~~~~ele~keke~~~~~k~Ie~~~kel~~Ke~~~~~~e~~ie~~~~ELE~Kek~~e~~~ke~e~~~k~l  238 (1060)
                      +.++.++.-+-+...+...+-+++-.+..-+.-..+.+...+....++.+|+..+.++...+-+++..+.+-+...+.+
T Consensus        11 kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~l   89 (140)
T PF10473_consen   11 KLKESESEKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKEL   89 (140)
T ss_pred             HHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444555555555555555555555555555666666666666666666666666666666666555444444433

There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding

>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=89.60  E-value=82  Score=41.43  Aligned_cols=31  Identities=26%  Similarity=0.166  Sum_probs=14.4

Q ss_pred             cchHHHHHHHhcccccCCC--cHHHHHHHHHhh
Q 001522          824 HIAAIRFICAFKLTDIAKP--EAIFKQYLDDNI  854 (1060)
Q Consensus       824 qIeAVrFi~aFgL~dkFpP--VpLLKsYL~daK  854 (1060)
                      .|+|-+++-..+..-.|--  -.+|+.-+++.+
T Consensus       761 ~iea~~~i~~~e~~i~~~~~~~~~lk~a~~~~k  793 (1072)
T KOG0979|consen  761 NIEAERKIEKLEDNISFLEAREDLLKTALEDKK  793 (1072)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence            3455555544443333322  145566555555

>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1

Probab=89.55  E-value=0.76  Score=48.23  Aligned_cols=81  Identities=11%  Similarity=0.226  Sum_probs=55.1

Q ss_pred             HHHHHHHhhhccccccChHHHHHHHHhhhc-cc----chHHHHHHhCCchhhhHHHHHHHhcCccchHHHHHHHhccccc
Q 001522          765 LVFLQLLGTFELVASFNRVEIVELLWTISE-HK----QAPETCRALGFTDIVANFVRNLIGRKKHIAAIRFICAFKLTDI  839 (1060)
Q Consensus       765 ~aFLqLLa~FGI~seFd~deL~~Lv~~ia~-rk----qapeLc~sLGL~dkmpdiIq~LI~kGkqIeAVrFi~aFgL~dk  839 (1060)
                      ...|+.+..|++.++  .-.+.-++++... +.    -+...++.||..+  ..+|+.|+.+|+.++|++|+...+-++.
T Consensus        45 ~~~L~qllq~~Vi~D--Sk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~~~~--~~iievLL~~g~vl~ALr~ar~~~~~~~  120 (167)
T PF07035_consen   45 FSQLHQLLQYHVIPD--SKPLACQLLSLGNQYPPAYQLGLDMLKRLGTAY--EEIIEVLLSKGQVLEALRYARQYHKVDS  120 (167)
T ss_pred             HHHHHHHHhhcccCC--cHHHHHHHHHhHccChHHHHHHHHHHHHhhhhH--HHHHHHHHhCCCHHHHHHHHHHcCCccc
Confidence            355777888888763  4444444444432 11    2344555555433  2466889999999999999999999999


Q ss_pred             CCCcHHHHHH
Q 001522          840 AKPEAIFKQY  849 (1060)
Q Consensus       840 FpPVpLLKsY  849 (1060)
                      +||.-+|.+=
T Consensus       121 ~~~~~fLeAA  130 (167)
T PF07035_consen  121 VPARKFLEAA  130 (167)
T ss_pred             CCHHHHHHHH
Confidence            9997776653

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=89.21  E-value=24  Score=40.38  Aligned_cols=12  Identities=17%  Similarity=-0.136  Sum_probs=5.2

Q ss_pred             hhhhhhhHHHHH
Q 001522          140 LDLKMKEVGLVE  151 (1060)
Q Consensus       140 ~~lK~kel~~~~  151 (1060)
                      +..|..|-+=+.
T Consensus       133 l~aK~~WYeWR~  144 (325)
T PF08317_consen  133 LEAKKMWYEWRM  144 (325)
T ss_pred             HHHHHHHHHHHH
Confidence            344444444333

>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF

Probab=89.18  E-value=56  Score=40.11  Aligned_cols=12  Identities=33%  Similarity=0.362  Sum_probs=4.6

Q ss_pred             HHHHHHHHHhhc
Q 001522          743 AMKLAVEWKTKM  754 (1060)
Q Consensus       743 AkklA~~WK~ki  754 (1060)
                      |..||.+.+.+|
T Consensus       478 ~~~la~~i~~~i  489 (514)
T TIGR03319       478 AVVLARDIAKKI  489 (514)
T ss_pred             HHHHHHHHHHHH
Confidence            333344433333

>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins

Probab=88.86  E-value=1.3  Score=55.44  Aligned_cols=33  Identities=24%  Similarity=0.275  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHH
Q 001522          177 LKEKDLRKIRSSIEECEKELVMKEKHASSLQSL  209 (1060)
Q Consensus       177 ~keke~~~~~k~Ie~~~kel~~Ke~~~~~~e~~  209 (1060)
                      ..-++|+...+.++..+.+..+-++.++..+..
T Consensus       271 ~Elk~Lr~~~~n~elLeEe~~sLq~kl~~~E~~  303 (722)
T PF05557_consen  271 EELKHLRQSQENVELLEEEKRSLQRKLERLEEL  303 (722)
T ss_dssp             ---------------------------------
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            334566666666776666666555555544433

The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=88.81  E-value=33  Score=39.39  Aligned_cols=28  Identities=25%  Similarity=0.355  Sum_probs=10.1

Q ss_pred             HHHHHHHHhhHHHHHHHHHHHHHhhhhH
Q 001522          179 EKDLRKIRSSIEECEKELVMKEKHASSL  206 (1060)
Q Consensus       179 eke~~~~~k~Ie~~~kel~~Ke~~~~~~  206 (1060)
                      ..++......|+...+++...+.++..+
T Consensus       215 r~eL~~~~~~i~~~k~~l~el~~el~~l  242 (325)
T PF08317_consen  215 RQELAEQKEEIEAKKKELAELQEELEEL  242 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333333333333

>COG2433 Uncharacterized conserved protein [Function unknown]

Probab=88.31  E-value=9.5  Score=47.09  Aligned_cols=50  Identities=12%  Similarity=0.046  Sum_probs=39.2

Q ss_pred             hheecchhchHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhhHHH
Q 001522           36 LNFTVQWKDLEEHLDISMKSLEKQSNDADSKIRLLDQRAKEIESKESDLVL   86 (1060)
Q Consensus        36 l~~~lqw~~le~h~~s~~~~~~~~~~~~~~~~~~le~r~ke~e~ke~~~~~   86 (1060)
                      ++.|+-|+-=-||---+...--+-.++..+|.+.+|.+..+.=- |+|-+.
T Consensus       330 ~~r~~~~~~~ddH~RDALAAA~kAY~~yk~kl~~vEr~~~~~g~-~~d~~r  379 (652)
T COG2433         330 ALRTLKISVSDDHERDALAAAYKAYLAYKPKLEKVERKLPELGI-WKDVER  379 (652)
T ss_pred             HHhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcccccc-hhhHHH
Confidence            67788898888999888888888889999999999888776332 455443

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function

Probab=88.05  E-value=82  Score=39.48  Aligned_cols=60  Identities=23%  Similarity=0.279  Sum_probs=35.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhhHH
Q 001522          166 NLIKDFCEQIELKEKDLRKIRSSIEECEKELVMKEKHASSLQSLIEDYAEELESKEKLYD  225 (1060)
Q Consensus       166 ~~~~~~~~ele~keke~~~~~k~Ie~~~kel~~Ke~~~~~~e~~ie~~~~ELE~Kek~~e  225 (1060)
                      ....+-..++...+++++.+...|+....++++-...+..+..++++...+.+..++++.
T Consensus       321 ~~~~~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~  380 (594)
T PF05667_consen  321 DEQEEQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELK  380 (594)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344455566666667777777777776666666555555555555555444444444444

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

Probab=88.04  E-value=68  Score=38.56  Aligned_cols=7  Identities=14%  Similarity=0.117  Sum_probs=2.6

Q ss_pred             cCCchhh
Q 001522          532 ACDPASL  538 (1060)
Q Consensus       532 asDPAkl  538 (1060)
                      |+-|+.+
T Consensus       336 A~AdG~V  342 (420)
T COG4942         336 AIADGRV  342 (420)
T ss_pred             eecCceE
Confidence            3333333

>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril

Probab=87.86  E-value=0.16  Score=64.69  Aligned_cols=12  Identities=42%  Similarity=0.393  Sum_probs=0.0

Q ss_pred             hHhHhHHHHHHh
Q 001522          563 IRRTCILLLEQL  574 (1060)
Q Consensus       563 ~rrsCilLLEqL  574 (1060)
                      .|++|--=|+.|
T Consensus       519 ~Rr~~qr~l~~l  530 (859)
T PF01576_consen  519 TRRNHQRQLESL  530 (859)
T ss_dssp             ------------
T ss_pred             HHHhhHHHHHHH
Confidence            567766555554

Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.

>PRK12704 phosphodiesterase; Provisional

Probab=87.72  E-value=33  Score=42.10  Aligned_cols=8  Identities=25%  Similarity=0.418  Sum_probs=3.1

Q ss_pred             HHHHHHHH
Q 001522          295 KKYFNDIE  302 (1060)
Q Consensus       295 ~~~~ke~e  302 (1060)
                      ..+++.++
T Consensus       172 ~~~~~~~~  179 (520)
T PRK12704        172 AVLIKEIE  179 (520)
T ss_pred             HHHHHHHH
Confidence            33333333

>KOG0243 consensus Kinesin-like protein [Cytoskeleton]

Probab=87.08  E-value=1.2e+02  Score=40.28  Aligned_cols=270  Identities=19%  Similarity=0.205  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH--HHHhhhhHHHHHHHHHHHHHhhhhhHHHHH--------------H
Q 001522          166 NLIKDFCEQIELKEKDLRKIRSSIEECEKELVM--KEKHASSLQSLIEDYAEELESKEKLYDEIK--------------K  229 (1060)
Q Consensus       166 ~~~~~~~~ele~keke~~~~~k~Ie~~~kel~~--Ke~~~~~~e~~ie~~~~ELE~Kek~~e~~~--------------k  229 (1060)
                      ..++++..+++.+.-++.+.+.....-.-+=.-  .++++......|+++..||+.++++|..++              +
T Consensus       404 ~llKd~~~EIerLK~dl~AaReKnGvyisee~y~~~e~e~~~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~  483 (1041)
T KOG0243|consen  404 TLLKDLYEEIERLKRDLAAAREKNGVYISEERYTQEEKEKKEMAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKE  483 (1041)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHhhCceEechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH


Q ss_pred             HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001522          230 SIIQCETKLDCKKKELELTQTSIIELSLELHLEEEKLESLQRIVRLRENELDSKEEKLDAMKEEMKKYFNDIELKEREFN  309 (1060)
Q Consensus       230 e~e~~~k~l~~k~kEl~~~e~~i~e~~~ele~kEk~~e~~~k~ie~r~~el~~~~~e~~~~e~~~~~~~ke~e~KekEl~  309 (1060)
                      +.+.+..+|.-.-.+|...+..+......|..++.-+...-+.-.........+...++.+...+..++.-+..+.+.-.
T Consensus       484 ~~~~~k~~L~~~~~el~~~~ee~~~~~~~l~~~e~ii~~~~~se~~l~~~a~~l~~~~~~s~~d~s~l~~kld~~~~~~d  563 (1041)
T KOG0243|consen  484 EKEKLKSKLQNKNKELESLKEELQQAKATLKEEEEIISQQEKSEEKLVDRATKLRRSLEESQDDLSSLFEKLDRKDRLDD  563 (1041)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccc


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh-hHHHHHHHhHHHHHHhHHHhHHHHHHhhhHHHHHHhhHHHHHHHhhhh
Q 001522          310 GIRKCIEKRSQELTLKEKQLKCVQESLEGCR-NEFEEKENELISVEKLIDKCSEELELKKKHLCVIENSAAELSDECESN  388 (1060)
Q Consensus       310 ~~~k~ie~r~kELe~KEkql~~~~ke~~~~~-~e~e~k~keL~s~~K~ie~~~kELe~kekqle~ie~~~kel~~e~EsK  388 (1060)
                      .-+.-|..--++|-..-+.+...+..--+.. ..+......-.+-.-..-.-+..+..+-.+.-.+..++-+..+.+...
T Consensus       564 ~n~~~~~~~~~~l~~~~~~~~~~v~~~~s~~~~~l~~~~~~~~s~~s~~~~~~e~~~t~~~~~r~~~~~~~e~~q~~~~~  643 (1041)
T KOG0243|consen  564 DNQEVIDDFQSQLSENLSTLHGLVASSSSQQISQLTTMLAQMESFLSAKSKATEIMKTKISKDRDILSEVLESLQQLQEV  643 (1041)
T ss_pred             ccHHHHHHHhhhhhHHHHHHHHHHhhhhhhHHHHHHHHHhhhHHHhhhhccchhhhhhhhhhHHHHHHHHHHHHHHHHHH


Q ss_pred             hhhhhHHHHHHHHhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH
Q 001522          389 ELELDLIQTMAIGYLKQLKE-KEKQFHSLKEALDERWQDLEIKERKFEERVK---EF  441 (1060)
Q Consensus       389 eKele~~~~~~~~~~ke~e~-kekefeskEk~le~r~kELe~KekefE~rvK---E~  441 (1060)
                      .      ...+++....+.. ....+.+++..++.=.+......+.+..+..   ++
T Consensus       644 ~------k~~~~s~l~~i~s~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~l~~q~~~  694 (1041)
T KOG0243|consen  644 L------KKDSESCLEVINSSITSSINELESMLETIANTADDLLQNISSRLSNQQEI  694 (1041)
T ss_pred             H------hhhHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH

>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]

Probab=86.68  E-value=86  Score=38.24  Aligned_cols=173  Identities=18%  Similarity=0.215  Sum_probs=86.0

Q ss_pred             hhhhhhHHHHHHH-HHHHHHHHHHhHHhHHHHHhhhhhhhhhhhhhhhhhHhhHHHHHHHHHhhhhhhhhHHHHHhhhhh
Q 001522           78 ESKESDLVLAERR-IKECNFELACKEKQLELVRKRIGECECELQLKEGELNLVKKSVEEWLEKLDLKMKEVGLVEKSNDK  156 (1060)
Q Consensus        78 e~ke~~~~~~~~~-~ee~~~el~~Kek~l~~~r~~i~Ec~~El~~ke~~L~~~~~~i~e~~~~~~lK~kel~~~~~~~~~  156 (1060)
                      +.-|++|+..=.+ +..+++++++++-+.+.+-..|.|. .++..+...|......+-.-..++..=           ++
T Consensus       252 ~~~e~Elk~~f~~~~~~i~~~i~~lk~~n~~l~e~i~ea-~k~s~~i~~l~ek~r~l~~D~nk~~~~-----------~~  319 (622)
T COG5185         252 EPSEQELKLGFEKFVHIINTDIANLKTQNDNLYEKIQEA-MKISQKIKTLREKWRALKSDSNKYENY-----------VN  319 (622)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhHHHHHHH-----------HH
Confidence            4455666654333 3367788899988888777666664 223333332222211111000000000           11


Q ss_pred             hh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH---HHhhhhHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 001522          157 SL-VDQRRLENLIKDFCEQIELKEKDLRKIRSSIEECEKELVMK---EKHASSLQSLIEDYAEELESKEKLYDEIKKSII  232 (1060)
Q Consensus       157 ~~-~~~~~~e~~~~~~~~ele~keke~~~~~k~Ie~~~kel~~K---e~~~~~~e~~ie~~~~ELE~Kek~~e~~~ke~e  232 (1060)
                      .+ +|-.+-=..+..+-.+++.||.++.+.+.-|.+..+++.-+   =-.++.+..+-+++..||+--.-+.+++.++|-
T Consensus       320 ~mk~K~~~~~g~l~kl~~eie~kEeei~~L~~~~d~L~~q~~kq~Is~e~fe~mn~Ere~L~reL~~i~~~~~~L~k~V~  399 (622)
T COG5185         320 AMKQKSQEWPGKLEKLKSEIELKEEEIKALQSNIDELHKQLRKQGISTEQFELMNQEREKLTRELDKINIQSDKLTKSVK  399 (622)
T ss_pred             HHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence            22 22222235566667777777777777777777777765543   123344444444455555544444455555444


Q ss_pred             HHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 001522          233 QCETKLDCKKKELELTQTSIIELSLELHLEEEKLESLQRIVRLR  276 (1060)
Q Consensus       233 ~~~k~l~~k~kEl~~~e~~i~e~~~ele~kEk~~e~~~k~ie~r  276 (1060)
                      +..-..              .+..+.++-+=.++.+...+|..+
T Consensus       400 ~~~lea--------------q~~~~slek~~~~~~sl~~~i~~~  429 (622)
T COG5185         400 SRKLEA--------------QGIFKSLEKTLRQYDSLIQNITRS  429 (622)
T ss_pred             hHHHHH--------------HHHHHHHHHHHHHHHHHHHHhccc
Confidence            444444              344444444444555555555443

>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking

Probab=86.61  E-value=36  Score=37.25  Aligned_cols=30  Identities=27%  Similarity=0.408  Sum_probs=10.9

Q ss_pred             hHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Q 001522          205 SLQSLIEDYAEELESKEKLYDEIKKSIIQC  234 (1060)
Q Consensus       205 ~~e~~ie~~~~ELE~Kek~~e~~~ke~e~~  234 (1060)
                      .+...|+.+-++++.+.+.+++++..+..+
T Consensus        74 ~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~  103 (302)
T PF10186_consen   74 RLRERIERLRKRIEQKRERLEELRESLEQR  103 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333333333333333333

In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy

>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]

Probab=86.43  E-value=1.3e+02  Score=40.01  Aligned_cols=29  Identities=21%  Similarity=0.289  Sum_probs=23.4

Q ss_pred             CCCchHHHHHHHHHHhhhccccccChHHH
Q 001522          757 GTLNSLEVLVFLQLLGTFELVASFNRVEI  785 (1060)
Q Consensus       757 ~~~~slea~aFLqLLa~FGI~seFd~deL  785 (1060)
                      |++.++.|+|+|=-+-+|.=++=|--||+
T Consensus      1054 GGEKTvAaLALLFaihsy~PaPFfvlDEi 1082 (1141)
T KOG0018|consen 1054 GGEKTVAALALLFAIHSYKPAPFFVLDEI 1082 (1141)
T ss_pred             ccHHHHHHHHHHHHhccCCCCCceehhhH
Confidence            34578999999988888888888877765

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=86.32  E-value=43  Score=34.44  Aligned_cols=25  Identities=24%  Similarity=0.275  Sum_probs=10.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001522          298 FNDIELKEREFNGIRKCIEKRSQEL  322 (1060)
Q Consensus       298 ~ke~e~KekEl~~~~k~ie~r~kEL  322 (1060)
                      ..+++.++..|+......+.+..+|
T Consensus       110 ae~~eRkv~~le~~~~~~E~k~eel  134 (143)
T PF12718_consen  110 AEHFERKVKALEQERDQWEEKYEEL  134 (143)
T ss_pred             hHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            3344444444444443344444333

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>PF13851 GAS: Growth-arrest specific micro-tubule binding

Probab=85.30  E-value=59  Score=35.15  Aligned_cols=104  Identities=19%  Similarity=0.277  Sum_probs=58.6

Q ss_pred             hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 001522          188 SIEECEKELVMKEKHASSLQSLIEDYAEELESKEKLYDEIKKSIIQCETKLDCKKKELELTQTSIIELSLELHLEEEKLE  267 (1060)
Q Consensus       188 ~Ie~~~kel~~Ke~~~~~~e~~ie~~~~ELE~Kek~~e~~~ke~e~~~k~l~~k~kEl~~~e~~i~e~~~ele~kEk~~e  267 (1060)
                      .|.+..+.....++.+..+..+...+++-|...+++.++.++.+..-.+...           .+......+...++++.
T Consensus        35 ei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~-----------~L~~~k~rl~~~ek~l~  103 (201)
T PF13851_consen   35 EIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQ-----------SLQNLKARLKELEKELK  103 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHH
Confidence            3444444444445556666666666777777777777777766665544331           22233334444566666


Q ss_pred             HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Q 001522          268 SLQRIVRLRENELDSKEEKLDAMKEEMKKYFNDIE  302 (1060)
Q Consensus       268 ~~~k~ie~r~~el~~~~~e~~~~e~~~~~~~ke~e  302 (1060)
                      ...++.+.-..++.....+-+.+...|...+-++.
T Consensus       104 ~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evq  138 (201)
T PF13851_consen  104 DLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQ  138 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66666666555555555555555555555555544

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD

Probab=85.04  E-value=1.1e+02  Score=38.19  Aligned_cols=16  Identities=13%  Similarity=0.175  Sum_probs=10.0

Q ss_pred             cCCchhhHHHhhhccC
Q 001522          532 ACDPASLVLDAMEGFY  547 (1060)
Q Consensus       532 asDPAklVLDaiegf~  547 (1060)
                      +..+..+|+|.--|++
T Consensus       572 ~~~~~p~iiD~p~~~l  587 (650)
T TIGR03185       572 SGRRLPVIIDTPLGRL  587 (650)
T ss_pred             cCCCCCEEEcCCcccc
Confidence            3445667777766665

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.

>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms

Probab=84.36  E-value=0.31  Score=60.81  Aligned_cols=36  Identities=25%  Similarity=0.247  Sum_probs=0.0

Q ss_pred             hhhhhhhhHhhHHHHHHHHH---hhhhhhhhHHHHHhhh
Q 001522          119 LQLKEGELNLVKKSVEEWLE---KLDLKMKEVGLVEKSN  154 (1060)
Q Consensus       119 l~~ke~~L~~~~~~i~e~~~---~~~lK~kel~~~~~~~  154 (1060)
                      |.....+..-.+|++..+.+   ..+-.+.+++.-.+.|
T Consensus       286 L~~~A~~a~~LrDElD~lR~~a~r~~klE~~ve~YKkKL  324 (713)
T PF05622_consen  286 LQAEAREARALRDELDELREKADRADKLENEVEKYKKKL  324 (713)
T ss_dssp             ---------------------------------------
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444455555555555533   3333344444433333

The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.

>PRK00106 hypothetical protein; Provisional

Probab=84.35  E-value=1.2e+02  Score=37.74  Aligned_cols=25  Identities=20%  Similarity=0.457  Sum_probs=11.7

Q ss_pred             chhhHHHHHHHhhhhhhhhhhhHHHhh
Q 001522          503 TGKNLQLLLNQHLQKHDLVFGEISHTL  529 (1060)
Q Consensus       503 DgkgL~~~i~e~~k~~~~ir~Ei~~AL  529 (1060)
                      +|.+.+-|-.  .-..+.|=++.|.+.
T Consensus       244 eGrNir~~E~--~tGvdliiddtp~~v  268 (535)
T PRK00106        244 EGRNIRTLES--LTGIDVIIDDTPEVV  268 (535)
T ss_pred             CcchHHHHHH--HhCceEEEcCCCCeE
Confidence            4555554432  333444555555443

>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []

Probab=84.31  E-value=40  Score=35.34  Aligned_cols=43  Identities=19%  Similarity=0.371  Sum_probs=22.3

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001522          280 LDSKEEKLDAMKEEMKKYFNDIELKEREFNGIRKCIEKRSQEL  322 (1060)
Q Consensus       280 l~~~~~e~~~~e~~~~~~~ke~e~KekEl~~~~k~ie~r~kEL  322 (1060)
                      +.-.-+.++...++.+-+-+-+.-|++|+......|....++=
T Consensus        86 v~~vRkkID~vNreLkpl~~~cqKKEkEykealea~nEknkeK  128 (159)
T PF04949_consen   86 VEMVRKKIDSVNRELKPLGQSCQKKEKEYKEALEAFNEKNKEK  128 (159)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333444444444455555566666666666665554433

This entry represents proteins annotated as RAB6-interacting golgins.

>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking

Probab=83.60  E-value=74  Score=34.87  Aligned_cols=7  Identities=29%  Similarity=0.283  Sum_probs=2.5

Q ss_pred             HHHHHHH
Q 001522          266 LESLQRI  272 (1060)
Q Consensus       266 ~e~~~k~  272 (1060)
                      +..+++.
T Consensus       142 l~~~r~~  148 (302)
T PF10186_consen  142 LARRRRQ  148 (302)
T ss_pred             HHHHHHH
Confidence            3333333

In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy

>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []

Probab=82.95  E-value=62  Score=36.96  Aligned_cols=116  Identities=16%  Similarity=0.221  Sum_probs=79.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhh
Q 001522          159 VDQRRLENLIKDFCEQIELKEKDLRKIRSSIEECEKELVMKEKHASSLQSLIEDYAEELESKEKLYDEIKKSIIQCETKL  238 (1060)
Q Consensus       159 ~~~~~~e~~~~~~~~ele~keke~~~~~k~Ie~~~kel~~Ke~~~~~~e~~ie~~~~ELE~Kek~~e~~~ke~e~~~k~l  238 (1060)
                      -|-.+||.++++|.++-.-++=++|...-.++-...+.+........+.++--.+++..+..++.-+-+.-++-.++-++
T Consensus        18 qKIqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv   97 (307)
T PF10481_consen   18 QKIQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQVKESQV   97 (307)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHH
Confidence            34556788888888887777777777777777777776666666777777766667666777776666667777777777


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 001522          239 DCKKKELELTQTSIIELSLELHLEEEKLESLQRIVR  274 (1060)
Q Consensus       239 ~~k~kEl~~~e~~i~e~~~ele~kEk~~e~~~k~ie  274 (1060)
                      .+.+..|.+-+.+|+-+..++..-+-.++--+...-
T Consensus        98 ~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ~~~~  133 (307)
T PF10481_consen   98 NFLEGQLNSCKKQIEKLEQELKRCKSELERSQQAAS  133 (307)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            777666666666666665555555555554444443

Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].

>PF13863 DUF4200: Domain of unknown function (DUF4200)

Probab=82.61  E-value=44  Score=32.62  Aligned_cols=44  Identities=23%  Similarity=0.287  Sum_probs=23.5

Q ss_pred             HHhHHhHHHHHhhhhhhhhhhhhhhhhhHhhHHHHHHHHHhhhhhhhhHHH
Q 001522           99 ACKEKQLELVRKRIGECECELQLKEGELNLVKKSVEEWLEKLDLKMKEVGL  149 (1060)
Q Consensus        99 ~~Kek~l~~~r~~i~Ec~~El~~ke~~L~~~~~~i~e~~~~~~lK~kel~~  149 (1060)
                      -.|+.++..+.       ..|.+++.++...+..+..+...|.-++..|..
T Consensus         3 i~kkre~~~~~-------~~l~~kr~e~~~~~~~~~~~e~~L~~~e~~l~~   46 (126)
T PF13863_consen    3 IEKKREMFLVQ-------LALDTKREEIERREEQLKQREEELEKKEQELEE   46 (126)
T ss_pred             HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555555555       556666666666655555554444444444443

>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]

Probab=82.60  E-value=1.2e+02  Score=36.40  Aligned_cols=45  Identities=16%  Similarity=0.265  Sum_probs=21.5

Q ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 001522          248 TQTSIIELSLELHLEEEKLESLQRIVRLRENELDSKEEKLDAMKE  292 (1060)
Q Consensus       248 ~e~~i~e~~~ele~kEk~~e~~~k~ie~r~~el~~~~~e~~~~e~  292 (1060)
                      ....|..+.+.+..+-.++..+--.|..|+.++.+.+.+..-.+.
T Consensus       229 ~~q~i~qrd~~i~q~~q~iaar~e~I~~re~~lq~lEt~q~~leq  273 (499)
T COG4372         229 TAQAIQQRDAQISQKAQQIAARAEQIRERERQLQRLETAQARLEQ  273 (499)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444444555555555555555555555555444444444333

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=82.59  E-value=1.3e+02  Score=37.12  Aligned_cols=28  Identities=7%  Similarity=0.016  Sum_probs=11.6

Q ss_pred             HHHHHHHHHHHHHHhHHhHHHHHhhhhh
Q 001522           87 AERRIKECNFELACKEKQLELVRKRIGE  114 (1060)
Q Consensus        87 ~~~~~ee~~~el~~Kek~l~~~r~~i~E  114 (1060)
                      +..++.++.+.|-.+.-.||..-..|+.
T Consensus       145 l~~~y~~~rk~ll~~~~~~G~a~~~le~  172 (569)
T PRK04778        145 LKDLYRELRKSLLANRFSFGPALDELEK  172 (569)
T ss_pred             HHHHHHHHHHHHHhcCccccchHHHHHH
Confidence            3333444444444444444444433333

>PLN03106 TCP2 Protein TCP2; Provisional

Probab=82.14  E-value=2.2  Score=49.30  Aligned_cols=79  Identities=18%  Similarity=0.076  Sum_probs=38.4

Q ss_pred             hhhccCCCCCcCCCCCCCCCCCcccccccccCCCCccCCCC---ccc--------cCCcccchhccccccccc-cCCCCC
Q 001522          974 QLQNNYKRPRIEPLTTRAYMPQIPASVNLHRSSPTMQHGPG---VAL--------SGGQMQFDHIASNHLRVR-ANMGAG 1041 (1060)
Q Consensus       974 ~~~~~~kr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~--------~~~~~~~~~~~~~~~~~~-~~~~~~ 1041 (1060)
                      +.+-+|   .|.+--+-..||+-.+...-|--.|.+||||-   |.+        .++--.-|.+.+||.||+ ...-.|
T Consensus       306 ~~~lGN---si~q~m~m~~~pfn~~gd~hh~~~~~~Q~f~f~~dhlipva~s~~~~gdynLnfsiSSg~~gfNRGtLQSN  382 (447)
T PLN03106        306 QIQLGN---SIPQPISTNSHPFSSIGDHHHHHHHQHQHFSFVPDHLIPVATSNASGGDFNLNFTISSGLAGFNRGTLQSN  382 (447)
T ss_pred             ccccCC---CCCCccccCCCcccccccccccccccccccCCcCCccccccccCCCCCccceeeEeecccccccccccccC
Confidence            335566   33333233333443333344445566777752   211        112223357889999984 333344


Q ss_pred             cccccCCCcccccc
Q 001522         1042 QTSNVTGNQNLHHF 1055 (1060)
Q Consensus      1042 ~~~~~~~~~~~~~~ 1055 (1060)
                      -++++.+-+.||+|
T Consensus       383 S~sh~s~~~~lqr~  396 (447)
T PLN03106        383 STSHQSLLPHLQRF  396 (447)
T ss_pred             CCcccccchHHHhh
Confidence            44444455555555

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]

Probab=81.78  E-value=69  Score=33.21  Aligned_cols=37  Identities=27%  Similarity=0.316  Sum_probs=16.6

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 001522          237 KLDCKKKELELTQTSIIELSLELHLEEEKLESLQRIV  273 (1060)
Q Consensus       237 ~l~~k~kEl~~~e~~i~e~~~ele~kEk~~e~~~k~i  273 (1060)
                      +-+..+++++..+..+.....++...+-.+...+.+-
T Consensus        46 daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk   82 (140)
T PF10473_consen   46 DAENSKAEIETLEEELEELTSELNQLELELDTLRSEK   82 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333344444444444455555544444444444443

There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding

>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]

Probab=81.49  E-value=1.6e+02  Score=37.14  Aligned_cols=61  Identities=25%  Similarity=0.387  Sum_probs=39.3

Q ss_pred             hhhHHHHHHHHHHHHHHHHHhHHhHHHHHhhhhhhhhhhhhh--hhhhHhhHHHHHHHHHhhh
Q 001522           81 ESDLVLAERRIKECNFELACKEKQLELVRKRIGECECELQLK--EGELNLVKKSVEEWLEKLD  141 (1060)
Q Consensus        81 e~~~~~~~~~~ee~~~el~~Kek~l~~~r~~i~Ec~~El~~k--e~~L~~~~~~i~e~~~~~~  141 (1060)
                      ..|++-+++..++-..+|.+.......-|+.+-|-.+|++-.  +-.++++...+---+.++|
T Consensus        14 ~~dle~LQreLd~~~~~l~~~Q~~S~~srk~L~e~trefkk~~pe~k~k~~~~llK~yQ~EiD   76 (629)
T KOG0963|consen   14 RFDLERLQRELDAEATEIAQRQDESEISRKRLAEETREFKKNTPEDKLKMVNPLLKSYQSEID   76 (629)
T ss_pred             hccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhHHHHhccCcHHHHHHHHHHHHHHHHHHH
Confidence            346777888888888888888888888887666666666532  3334445444444433333

>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants

Probab=81.17  E-value=1.8e+02  Score=37.67  Aligned_cols=150  Identities=18%  Similarity=0.236  Sum_probs=94.0

Q ss_pred             hhhHHHHHHHHHHHHHHHHHhHHhHHHHHhhhhhhhhhhhhhhhhhHhhHHHHHHHHHhhhhhhhhHHHHHhhhhhhhHH
Q 001522           81 ESDLVLAERRIKECNFELACKEKQLELVRKRIGECECELQLKEGELNLVKKSVEEWLEKLDLKMKEVGLVEKSNDKSLVD  160 (1060)
Q Consensus        81 e~~~~~~~~~~ee~~~el~~Kek~l~~~r~~i~Ec~~El~~ke~~L~~~~~~i~e~~~~~~lK~kel~~~~~~~~~~~~~  160 (1060)
                      |.+...++...+.-...=..-+....-+.+-+-||.+.|..-+.+-.+....      -+--|..|.+..+.        
T Consensus        23 e~e~~~lk~~l~~~~~~~~~~e~r~~hld~aLkec~~qlr~~ree~eq~i~~------~~~~~s~e~e~~~~--------   88 (769)
T PF05911_consen   23 EAEAASLKQQLEAATQQKLALEDRVSHLDGALKECMRQLRQVREEQEQKIHE------AVAKKSKEWEKIKS--------   88 (769)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHH------HHHHHhHHHHHHHH--------
Confidence            3444444444444333333334455556667788887665554444443111      12224455555444        


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhh
Q 001522          161 QRRLENLIKDFCEQIELKEKDLRKIRSSIEECEKELVMKEKHASSLQSLIEDYAEELESKEKLYDEIKKSIIQCETKLDC  240 (1060)
Q Consensus       161 ~~~~e~~~~~~~~ele~keke~~~~~k~Ie~~~kel~~Ke~~~~~~e~~ie~~~~ELE~Kek~~e~~~ke~e~~~k~l~~  240 (1060)
                        +|+..+.++.+++....-+.....+.+..+.+-+..-.......+.+|..+...|++-+|+.-.++-++-...++|+-
T Consensus        89 --~le~~l~e~~~~l~~~~~e~~~l~~~l~~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~~~~kelei  166 (769)
T PF05911_consen   89 --ELEAKLAELSKRLAESAAENSALSKALQEKEKLIAELSEEKSQAEAEIEDLMARLESTEKENSSLKYELHVLSKELEI  166 (769)
T ss_pred             --HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              566777777777777777777777777777766666666666677778888888888888888888888888887766


Q ss_pred             hHHHHH
Q 001522          241 KKKELE  246 (1060)
Q Consensus       241 k~kEl~  246 (1060)
                      +-.|.+
T Consensus       167 r~~E~~  172 (769)
T PF05911_consen  167 RNEERE  172 (769)
T ss_pred             HHHHHH
Confidence            655544

The function of this family is unknown.

>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]

Probab=80.50  E-value=1.2e+02  Score=35.09  Aligned_cols=18  Identities=28%  Similarity=0.396  Sum_probs=8.3

Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 001522          422 ERWQDLEIKERKFEERVK  439 (1060)
Q Consensus       422 ~r~kELe~KekefE~rvK  439 (1060)
                      .+++.|.++.+....+.+
T Consensus       242 k~ik~l~~~~~~~~~~~~  259 (294)
T COG1340         242 KKIKALRAKEKAAKRREK  259 (294)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            344555555544443333

>PF13851 GAS: Growth-arrest specific micro-tubule binding

Probab=80.25  E-value=92  Score=33.72  Aligned_cols=74  Identities=24%  Similarity=0.273  Sum_probs=42.5

Q ss_pred             HHHHHHHHhhhhhhhhHHHHHHHhHHHHHHhHHHhHHHHHHhhhHHH-HHHhhHHHHHHHhhhhhhhhhHHHHHH
Q 001522          326 EKQLKCVQESLEGCRNEFEEKENELISVEKLIDKCSEELELKKKHLC-VIENSAAELSDECESNELELDLIQTMA  399 (1060)
Q Consensus       326 Ekql~~~~ke~~~~~~e~e~k~keL~s~~K~ie~~~kELe~kekqle-~ie~~~kel~~e~EsKeKele~~~~~~  399 (1060)
                      ++++..+.-+.+.....|..-+.|-+.....|...+-++.-+----- ..++.+..+...+|.++.+|.+.....
T Consensus        99 ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQk~~~kn~lLEkKl~~l~~~lE~keaqL~evl~~~  173 (201)
T PF13851_consen   99 EKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQQKTGLKNLLLEKKLQALSEQLEKKEAQLNEVLAAA  173 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            44455555555555555555555555566666666655543321111 356667777777888887777655543

>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=80.15  E-value=37  Score=37.62  Aligned_cols=80  Identities=23%  Similarity=0.199  Sum_probs=47.5

Q ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 001522          194 KELVMKEKHASSLQSLIEDYAEELESKEKLYDEIKKSIIQCETKLDCKKKELELTQTSIIELSLELHLEEEKLESLQRIV  273 (1060)
Q Consensus       194 kel~~Ke~~~~~~e~~ie~~~~ELE~Kek~~e~~~ke~e~~~k~l~~k~kEl~~~e~~i~e~~~ele~kEk~~e~~~k~i  273 (1060)
                      +++..|-.++..+..+|-.-++.++..++-+.+..++.+.....-....++|..|...|..+-..+..-+..-+.++..+
T Consensus         4 ~~ir~K~~~lek~k~~i~~e~~~~e~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i   83 (230)
T PF10146_consen    4 KEIRNKTLELEKLKNEILQEVESLENEEKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKI   83 (230)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445555555555555555566666666666666666666666666677777777777776655555444444444444

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.

>PRK09039 hypothetical protein; Validated

Probab=80.15  E-value=1.3e+02  Score=35.21  Aligned_cols=43  Identities=21%  Similarity=0.319  Sum_probs=21.5

Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 001522          173 EQIELKEKDLRKIRSSIEECEKELVMKEKHASSLQSLIEDYAE  215 (1060)
Q Consensus       173 ~ele~keke~~~~~k~Ie~~~kel~~Ke~~~~~~e~~ie~~~~  215 (1060)
                      .++..++++++.....|.....-|.........++..|..+-.
T Consensus        46 ~~i~~~~~eL~~L~~qIa~L~e~L~le~~~~~~l~~~l~~l~~   88 (343)
T PRK09039         46 REISGKDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRA   88 (343)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            4455555555555555555554444444444444444444333

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	1060
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	6e-20
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	3e-19
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	5e-19
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	1e-14
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	7e-09
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	3e-08
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	5e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-15
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-07
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	2e-13
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	1e-11
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	3e-11
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	3e-09
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	1e-06
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	1e-10
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	4e-10
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	5e-09
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	9e-09
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	4e-08
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	9e-07
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	2e-06
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	8e-06
2xs1_A	704	Programmed cell death 6-interacting protein; prote	7e-08
2xs1_A	704	Programmed cell death 6-interacting protein; prote	8e-06
2xs1_A	704	Programmed cell death 6-interacting protein; prote	7e-04
1cii_A	602	Colicin IA; bacteriocin, ION channel formation, tr	1e-07
1cii_A	602	Colicin IA; bacteriocin, ION channel formation, tr	4e-06
1sjj_A	863	Actinin; 3-helix bundle, calponin homology domain,	2e-07
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	9e-06
1g8x_A	1010	Myosin II heavy chain fused to alpha-actinin 3; mo	2e-05
1w1w_A	430	Structural maintenance of chromosome 1; cohesin, c	4e-05
2w00_A	1038	HSDR, R.ECOR124I; ATP-binding, DNA-binding, restri	1e-04
2w00_A	1038	HSDR, R.ECOR124I; ATP-binding, DNA-binding, restri	6e-04
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	2e-04
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	4e-04
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	4e-04

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 95.3 bits (237), Expect = 6e-20
 Identities = 56/329 (17%), Positives = 145/329 (44%), Gaps = 2/329 (0%)

Query: 66   KIRLLDQRAKEIESKESDLVLAERRIKECNFELACKEKQLELVRKRIGECECELQLKEGE 125
            +   +  + +E++  +     AE  +KE   +     ++  L+++++ + E EL  +  E
Sbjct: 855  QEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKL-QAETELYAEAEE 913

Query: 126  LNLVKKSVEEWLEKLDLKMKE-VGLVEKSNDKSLVDQRRLENLIKDFCEQIELKEKDLRK 184
            + +   + ++ LE++  +M+  +   E+ + +   ++++++  + D  EQ+E +E   +K
Sbjct: 914  MRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQK 973

Query: 185  IRSSIEECEKELVMKEKHASSLQSLIEDYAEELESKEKLYDEIKKSIIQCETKLDCKKKE 244
            ++      + ++   E     ++       +E +  E+   ++  ++ + E K     K 
Sbjct: 974  LQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKL 1033

Query: 245  LELTQTSIIELSLELHLEEEKLESLQRIVRLRENELDSKEEKLDAMKEEMKKYFNDIELK 304
                ++ I EL + L  EE+  + L++I R  E E     E++  ++ ++ +    +  K
Sbjct: 1034 KNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKK 1093

Query: 305  EREFNGIRKCIEKRSQELTLKEKQLKCVQESLEGCRNEFEEKENELISVEKLIDKCSEEL 364
            E E       +E  + +     K+++ ++  +   + + E ++      EK     SEEL
Sbjct: 1094 EEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEEL 1153

Query: 365  ELKKKHLCVIENSAAELSDECESNELELD 393
            E  K  L    ++ A   +   S+  + D
Sbjct: 1154 EALKTELEDTLDTTATQQELRGSDYKDDD 1182

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 93.0 bits (231), Expect = 3e-19
 Identities = 53/339 (15%), Positives = 138/339 (40%), Gaps = 7/339 (2%)

Query: 132  SVEEWLEKLDLKMKEVGLVEKSNDKSLVDQRRLENLIKDFCEQIELKEKDLRKIRSSIEE 191
             V    E++  K +E+   ++   K+  + + LE      CE+  L ++ L+       E
Sbjct: 851  KVTRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAE 910

Query: 192  CEKELVMKEKHASSLQSLIEDYAEELESKEKLYDEIKKSIIQCETKLDCKKKELELTQTS 251
             E+  V        L+ ++ +    +E +E+   +++    + + ++   +++LE  + +
Sbjct: 911  AEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAA 970

Query: 252  IIELSLELHLEEEKLESLQRIVRLRENELDSKEEKLDAMKEEMKKYFNDIELKEREFNGI 311
              +L LE    + K++ ++  + + E++ +   ++   ++E +     ++  +E +   +
Sbjct: 971  RQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNL 1030

Query: 312  RKCIEKRSQELTLKEKQLKCVQESLEGCRNEFEEKENELISVEKLIDKCSEELELKKKHL 371
             K   K    +     +L+   +  E  R E E+ + +L      + +   EL+ +   L
Sbjct: 1031 TKLKNKHESMI----SELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAEL 1086

Query: 372  CVIENSAAELSDECESNELELDLIQTMAIGYLKQLKEKEKQFHSLKEALDERWQDLEIKE 431
               +   A+  +E ++    L+   +     LK+++E E     L+E L+         E
Sbjct: 1087 ---KAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAE 1143

Query: 432  RKFEERVKEFELREKEIESIRKAVEDRSKNLELKEKKLS 470
            ++  +  +E E  + E+E        + +      K   
Sbjct: 1144 KQKRDLSEELEALKTELEDTLDTTATQQELRGSDYKDDD 1182

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 92.2 bits (229), Expect = 5e-19
 Identities = 50/320 (15%), Positives = 125/320 (39%), Gaps = 10/320 (3%)

Query: 157  SLVDQRRLENLIKDFCEQIELKEKDLRKIRSSIEECEKELVMKEKHASSLQSLIEDYAEE 216
             L+   R E  ++   E+++  ++  +K  + ++E E++     +  + LQ  ++   E 
Sbjct: 848  PLLKVTRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETEL 907

Query: 217  LESKEKLYDEIKKSIIQCETKLDCKKKELELTQTSIIELSLELHLEEEKLESLQRIVRLR 276
                E++   +     + E  L   +  +E  +    +L  E    ++++  L+  +   
Sbjct: 908  YAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEE 967

Query: 277  ENELDSKEEKLDAMKEEMKKYFNDIELKEREFNGIRKCIEKRSQELTLKEKQLKCVQESL 336
            E      + +      ++KK  +DI + E +         K ++E  L E+++  +  +L
Sbjct: 968  EAARQKLQLEKVTADGKIKKMEDDILIMEDQ-------NNKLTKERKLLEERVSDLTTNL 1020

Query: 337  EGCRNEFEEKENELISVEKLIDKCSEELELKKKHLCVIENSAAELSDECESNELELDLIQ 396
                 + +         E +I +    L+ ++K    +E    +L  E      ++  +Q
Sbjct: 1021 AEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQ 1080

Query: 397  TMAIGYLKQLKEKEKQFHSLKEALDERWQDLEIKERKFEERVKEFELREKEIESIRKA-- 454
                    QL +KE++  +    L++         +K  E        ++++ES + A  
Sbjct: 1081 AQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARN 1140

Query: 455  -VEDRSKNLELKEKKLSNNL 473
              E + ++L  + + L   L
Sbjct: 1141 KAEKQKRDLSEELEALKTEL 1160

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 77.6 bits (191), Expect = 1e-14
 Identities = 53/356 (14%), Positives = 146/356 (41%), Gaps = 28/356 (7%)

Query: 87   AERRIKECNFELACKEKQLELVRKRIGECECELQLKEGELNLVKKSVEEWLEKLDLKMKE 146
             E  ++  + EL   +++ +     + E E +      E NL+++ ++   E        
Sbjct: 855  QEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEA--- 911

Query: 147  VGLVEKSNDKSLVDQRRLENLIKDFCEQIELKEKDLRKIRSSIEECEKELVMKEKHASSL 206
                E+   +    ++ LE ++ +   +IE +E+  +++++  ++ ++++          
Sbjct: 912  ----EEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQM---------- 957

Query: 207  QSLIEDYAEELESKEKLYDEIKKSIIQCETKLDCKKKELELTQTSIIELSLELHLEEEKL 266
              L E   EE  +++KL    +   +  + K+   + ++ + +    +L+ E  L EE++
Sbjct: 958  LDLEEQLEEEEAARQKL----QLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERV 1013

Query: 267  ESLQRIVRLRENELDSKEEKLDAMKEEMKKYFNDIELKEREFNGIRKCIEKRSQELTLKE 326
              L   +     E + K + L  +K + +   +++E++ ++    R+ +EK  ++L   E
Sbjct: 1014 SDLTTNL----AEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKL---E 1066

Query: 327  KQLKCVQESLEGCRNEFEEKENELISVEKLIDKCSEELELKKKHLCVIENSAAELSDECE 386
             +   + E +   + +  E + +L   E+ +      LE +            EL     
Sbjct: 1067 GESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHIS 1126

Query: 387  SNELELDLIQTMAIGYLKQLKEKEKQFHSLKEALDERWQDLEIKERKFEERVKEFE 442
              + +L+  +       KQ ++  ++  +LK  L++       ++       K+ +
Sbjct: 1127 DLQEDLESEKAARNKAEKQKRDLSEELEALKTELEDTLDTTATQQELRGSDYKDDD 1182

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 59.1 bits (143), Expect = 7e-09
 Identities = 46/235 (19%), Positives = 100/235 (42%), Gaps = 18/235 (7%)

Query: 258  ELHLEEEKLESLQRIVRLRENELDSKEEKLDAMKEEMKKYFNDIELKEREFNGIRKCIEK 317
            E+  ++E+L+  +   +  E EL   E+K   + EE     N ++ K +    +    E+
Sbjct: 858  EMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEK----NLLQEKLQAETELYAEAEE 913

Query: 318  RSQELTLKEKQLKCVQESLEGCRNEFEEKENELISVEKLIDKCSEELELKKKHLCVIENS 377
                L  K+++L+ +   +E      EE+E     ++    K  +++   ++ L   E +
Sbjct: 914  MRVRLAAKKQELEEILHEME---ARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAA 970

Query: 378  AAELSDECESNELELDLIQTMAIGYLKQLKEKEKQFHSLKEALDERWQDLEIKER----- 432
              +L  E  + + ++  ++   +    Q  +  K+   L+E + +   +L  +E      
Sbjct: 971  RQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNL 1030

Query: 433  -----KFEERVKEFELREKEIESIRKAVEDRSKNLELKEKKLSNNLH-LQVKIEQ 481
                 K E  + E E+R K+ E  R+ +E   + LE +   L   +  LQ +I +
Sbjct: 1031 TKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAE 1085

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 57.2 bits (138), Expect = 3e-08
 Identities = 29/205 (14%), Positives = 89/205 (43%), Gaps = 5/205 (2%)

Query: 283  KEEKLDAMKEEMKKYFNDIELKEREFNGIRKCIEKRSQELTLKEKQLKCVQESLEGCRNE 342
            +EE++ A  EE+++     +  E E   + +   +  +E  L +++L+   E        
Sbjct: 855  QEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEM 914

Query: 343  FEEKENELISVEKLIDKCSEELELKKKHLCVIENSAAELSDECESNELELDLIQTMAIGY 402
                  +   +E+++ +    +E +++    ++    ++  +    E +L+  +      
Sbjct: 915  RVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAA---- 970

Query: 403  LKQLKEKEKQFHSLKEALDERWQDLEIKERKFEERVKEFELREKEIESIRKAVEDRSKNL 462
             ++L+ ++       + +++    +E +  K  +  K  E R  ++ +     E+++KNL
Sbjct: 971  RQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNL 1030

Query: 463  ELKEKKLSNNLH-LQVKIEQPESLK 486
               + K  + +  L+V++++ E  +
Sbjct: 1031 TKLKNKHESMISELEVRLKKEEKSR 1055

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 43.3 bits (102), Expect = 5e-04
 Identities = 26/160 (16%), Positives = 74/160 (46%), Gaps = 18/160 (11%)

Query: 317 KRSQELTLKEKQLKCVQESLEGCRNEFEEKENELISVEKLIDKCSEELELKKKHLCVIEN 376
           ++ +E+  K+++L+  +E  +    E +E E +   + +  +   E+L+ + +     E 
Sbjct: 854 RQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEE 913

Query: 377 SAAELSDECESNELELDLIQTMAIGYLKQLKEKEKQFHSLKEALDERWQDLEIKERKFEE 436
               L+ +                   ++L+E   +  +  E  +ER Q L+ +++K ++
Sbjct: 914 MRVRLAAKK------------------QELEEILHEMEARIEEEEERSQQLQAEKKKMQQ 955

Query: 437 RVKEFELREKEIESIRKAVEDRSKNLELKEKKLSNNLHLQ 476
           ++ + E + +E E+ R+ ++      + K KK+ +++ + 
Sbjct: 956 QMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIM 995

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 81.4 bits (200), Expect = 1e-15
 Identities = 90/607 (14%), Positives = 199/607 (32%), Gaps = 168/607 (27%)

Query: 3   NCDNNKEELRLAESKKEI------------LRRSYD-LAHAQANSVLNFTVQWKDLEEHL 49
           +C + ++  +   SK+EI              R +  L   Q   V  F      +EE L
Sbjct: 34  DCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKF------VEEVL 87

Query: 50  DIS----MKSLEKQSND-ADSKIRLLDQRAKEIESKESDLVLAERRIKECNFELACKEKQ 104
            I+    M  ++ +    +      ++QR +     +   V A+  +         + + 
Sbjct: 88  RINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQ---VFAKYNV--------SRLQP 136

Query: 105 LELVRKRIGECECELQLKEGELNLVK------KSV--------EEWLEKLDLKMKEVGLV 150
              +R+ +      L+L+  +  L+       K+          +   K+D K+  + L 
Sbjct: 137 YLKLRQAL------LELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLK 190

Query: 151 EKSNDKSLVDQRRLENLIKDFCEQIELKEKDLRKIRSSIEECE---KELVMKEKHASSL- 206
             ++ +++++   L+ L+         +      I+  I   +   + L+  + + + L 
Sbjct: 191 NCNSPETVLEM--LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL 248

Query: 207 ------------------QSLI-------EDYAEELESKEKLYDEIKKSIIQCETK---- 237
                             + L+        D+     +     D    ++   E K    
Sbjct: 249 VLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLL 308

Query: 238 --LDCKKKEL--ELTQTSIIELSLELHLEEEKLESLQRIVRLRENELDSKEEK----LDA 289
             LDC+ ++L  E+  T+   LS+   + E   + L      +    D         L+ 
Sbjct: 309 KYLDCRPQDLPREVLTTNPRRLSI---IAESIRDGLATWDNWKHVNCDKLTTIIESSLNV 365

Query: 290 MK-EEMKKYFNDI-------------------ELKEREFNGIRKCIEKRSQELTLKEKQL 329
           ++  E +K F+ +                   ++ + +   +   + K S    L EKQ 
Sbjct: 366 LEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYS----LVEKQP 421

Query: 330 KCVQESLEGCRNEFEEKENELISVEK-LIDK-------CSEELELKKK----------HL 371
           K    S+     E + K     ++ + ++D         S++L               HL
Sbjct: 422 KESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHL 481

Query: 372 CVIENSAAELSDECESNELELDLIQTMAIGYLKQ-LKEKEKQFHSLKEALDERWQDLEIK 430
             IE+   E         + LD        +L+Q ++     +++    L+   Q L+  
Sbjct: 482 KNIEH--PERMTLFR--MVFLDF------RFLEQKIRHDSTAWNASGSILNT-LQQLKFY 530

Query: 431 ERKFEERVKEFELREKEIES-IRKAVED--RSKNLELKEKKLSNNLHLQVKIEQPESLKG 487
           +    +   ++E     I   + K  E+   SK  +L          L++ +   +    
Sbjct: 531 KPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDL----------LRIALMAEDEAIF 580

Query: 488 NEGTKQL 494
            E  KQ+
Sbjct: 581 EEAHKQV 587

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 67.6 bits (164), Expect = 2e-11
 Identities = 98/732 (13%), Positives = 222/732 (30%), Gaps = 216/732 (29%)

Query: 198 MKEKHASSLQSLIEDYAEELESKEKLYDEIKKSIIQCETKLDCKKKELELTQTSIIELSL 257
            + ++   L    + + +  + K+    ++ KSI+         K+E++           
Sbjct: 14  HQYQYKDILSVFEDAFVDNFDCKD--VQDMPKSIL--------SKEEID----------- 52

Query: 258 ELHLEEEKLESLQRIVRLRENELDSKEEKLDAMKEEMKKYFNDIELKEREFNGIRKCIEK 317
            + + ++ +    R+       L SK+E      E ++K+  ++     +F         
Sbjct: 53  HIIMSKDAVSGTLRLFWT----LLSKQE------EMVQKFVEEVLRINYKF--------- 93

Query: 318 RSQELTLKEK-QLKCVQESLEGCRNEFEEKENELISVEKLIDK---CSEELELK-KKHLC 372
                 L    + +  Q S+      + E+ + L +  ++  K      +  LK ++ L 
Sbjct: 94  ------LMSPIKTEQRQPSMM--TRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALL 145

Query: 373 VIENSAAELSDECESNELELDLIQTMAIGYLKQLKEKEKQFHSL-KEALDERWQDLEIKE 431
                  EL         +  LI  +  G  K           +  +         ++ +
Sbjct: 146 -------ELRPA------KNVLIDGVL-GSGKT---------WVALDVC----LSYKV-Q 177

Query: 432 RKFEERVKEFELREKEIESIRKAVEDRSKNLELKEKKLSNNLHLQVKIEQPESLKGNEGT 491
            K + ++  F L  K   S     E   + L+    ++  N   +        L+ +   
Sbjct: 178 CKMDFKI--FWLNLKNCNSP----ETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQ 231

Query: 492 KQLSLQSCTMITGKNLQLLLNQHLQKHDLVFGEISHTLTKACDPASLVLDAMEGFYPPHS 551
            +L               LL     ++ L                 LVL  ++     ++
Sbjct: 232 AELRR-------------LLKSKPYENCL-----------------LVLLNVQ-----NA 256

Query: 552 REGDMEFDVSIIRRTC-ILLLEQLSSVTPEINPQVRDEAMKVAGEWKKKMRVAEDNSLEV 610
           +  +  F++S     C ILL  +   VT  ++         ++ +      +  D     
Sbjct: 257 KAWNA-FNLS-----CKILLTTRFKQVTDFLSAATTTH---ISLDHHSMT-LTPDEVKS- 305

Query: 611 LGFLHLLAAYGLGPSFDGIELESLLDIVAQHRQTSKLRQSLGFAEKAHGLQCSTTREARS 670
                LL  Y L             D+  +   T+  R S+  AE       +       
Sbjct: 306 -----LLLKY-LDCRPQ--------DLPREVLTTNPRRLSI-IAESIRDGLATWDN---- 346

Query: 671 CLSLLNKHDLGHNEVLQ--LLHLAPDP--AMFVLDFIQHWKSQGTGFEEDNVKCCILVLE 726
               +N   L    +++  L  L P     MF    +         F         ++L 
Sbjct: 347 -WKHVNCDKL--TTIIESSLNVLEPAEYRKMFDRLSV---------FPPS-AHIPTILLS 393

Query: 727 KL------KEVLPIMNPRVKGEAMKLAVEWKTKMGVGTLNSLEVLVFLQLLGTFEL---- 776
            +       +V+ ++N   K       VE + K    ++ S+ + + ++L   + L    
Sbjct: 394 LIWFDVIKSDVMVVVNKLHK----YSLVEKQPKESTISIPSIYLELKVKLENEYALHRSI 449

Query: 777 VASFNRVEIVEL------------LWTISEH-KQAPETCRALGFTDIVANFVRNLIGRKK 823
           V  +N  +  +                I  H K      R   F  +  +F    + +K 
Sbjct: 450 VDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDF--RFLEQKI 507

Query: 824 HIAAIRFICAFKLTD-----------IAKPEAIFKQYLDDNISDIHRKGNNSSDAKVK-- 870
              +  +  +  + +           I   +  +++ ++  +  + +   N   +K    
Sbjct: 508 RHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDL 567

Query: 871 ---AMDFEVNAL 879
              A+  E  A+
Sbjct: 568 LRIALMAEDEAI 579

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 63.7 bits (154), Expect = 3e-10
 Identities = 94/591 (15%), Positives = 195/591 (32%), Gaps = 157/591 (26%)

Query: 386 ESNELEL---DLIQTMAIGYLKQLKEKEKQFHSLKEALDERWQDLEIKERKFEERVKE-F 441
           E+ E +    D++      ++     K+ Q    K  L +   D  I  +         F
Sbjct: 10  ETGEHQYQYKDILSVFEDAFVDNFDCKDVQ-DMPKSILSKEEIDHIIMSKDAVSGTLRLF 68

Query: 442 E-LREKEIESIRKAVEDRSKNLELKEKKLSNNLHLQVKIEQPESLKGNEGTKQLSLQSCT 500
             L  K+ E ++K VE+    L +  K L + +  +               +Q S+ +  
Sbjct: 69  WTLLSKQEEMVQKFVEE---VLRINYKFLMSPIKTE--------------QRQPSMMTRM 111

Query: 501 MITGKNLQLLLNQHLQKHDLVFGEISHTLTKA---CDPAS-LVLDAMEGFYPPHSREGDM 556
            I  ++     NQ   K+++   +    L +A     PA  +++D + G        G  
Sbjct: 112 YIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGS-------G-- 162

Query: 557 EFDVSIIRRTCILLLEQLSSVTPEINPQVRDEAMKVAGEWKKKMRVAEDNSLEVLGFLHL 616
                   +T  + L+   S   +          K+   W   + +   NS E +     
Sbjct: 163 --------KTW-VALDVCLSYKVQCKM-----DFKIF--W---LNLKNCNSPETV----- 198

Query: 617 LAAYGLGPSFDGIELESLLDIVAQHRQTSKLRQSLGFAEKAHGLQCSTTREARSCLSLLN 676
                         LE L  ++ Q      +  +             T+R   S    L 
Sbjct: 199 --------------LEMLQKLLYQ------IDPNW------------TSRSDHSSNIKLR 226

Query: 677 KHDLGHNEVLQLLHLAPDP-AMFVLDFIQ---HWKSQGTGFEEDNVKCCILVLEKLKEVL 732
            H +   E+ +LL   P    + VL  +Q    W +    F   N+ C IL+  + K+V 
Sbjct: 227 IHSI-QAELRRLLKSKPYENCLLVLLNVQNAKAWNA----F---NLSCKILLTTRFKQVT 278

Query: 733 PIMNPRVKGEAMKLAVEWKTKMGVGTLNSLEVLVFLQLLGTFELVASFNRVEIVELLWTI 792
             ++         ++++  +     TL   EV           L+  +      +L    
Sbjct: 279 DFLSAATTTH---ISLDHHSM----TLTPDEVK---------SLLLKYLDCRPQDL---- 318

Query: 793 SEHKQAPETC----RALGFTDIVANFVRNLIGRK---KHIAAIRFICAFKLT-DIAKPEA 844
                  E      R L    I+A  +R+ +      KH+   +     + + ++ +P A
Sbjct: 319 -----PREVLTTNPRRLS---IIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEP-A 369

Query: 845 IFKQYLDDNISDIHRKGNNSSDAKVKAMDFEV---NALTFLIECFKENKLES-SLLIENI 900
            +++  D  +S +         A +  +   +   + +   +     NKL   SL+ +  
Sbjct: 370 EYRKMFDR-LS-VFPP-----SAHIPTILLSLIWFDVIKSDVMVV-VNKLHKYSLVEKQP 421

Query: 901 KQRIVQLEMAKADCRRHSTPAPSATIQLQLASRNNYNIGTSTPTNQPVPSH 951
           K+  + +     + +            L  +  ++YNI  +  ++  +P +
Sbjct: 422 KESTISIPSIYLELKVK----LENEYALHRSIVDHYNIPKTFDSDDLIPPY 468

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 53.7 bits (128), Expect = 3e-07
 Identities = 59/323 (18%), Positives = 113/323 (34%), Gaps = 81/323 (25%)

Query: 5   DNNKEELRLAESKKEILR-----RSYDLAH-AQANSVLNFTVQWKDLEEHLDISMKSLEK 58
           D++   L   E K  +L      R  DL       +    ++  + + + L     + + 
Sbjct: 292 DHHSMTLTPDEVK-SLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATW-DNWKH 349

Query: 59  QSNDADSKIRLLDQRAKEIESKESDLVLAERRIKECNFELAC-------KEKQLELVRKR 111
            + D  + I         IES  + L  AE   ++    L+            L L+   
Sbjct: 350 VNCDKLTTI---------IESSLNVLEPAE--YRKMFDRLSVFPPSAHIPTILLSLIWFD 398

Query: 112 IGECECELQLKEGELNLVKKS-VEEWLEK---------LDLKMKEVGLVEKSNDKSLVDQ 161
           + + +  + + +    L K S VE+  ++         L+LK+K          +S+VD 
Sbjct: 399 VIKSDVMVVVNK----LHKYSLVEKQPKESTISIPSIYLELKVKLENEYALH--RSIVDH 452

Query: 162 RRL------ENLIKD-----FC-------EQIELKEK---------DLRKIRSSIEECEK 194
             +      ++LI       F        + IE  E+         D R +   I     
Sbjct: 453 YNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDST 512

Query: 195 ELVMKEKHASSLQSLI--EDYAEELESK-EKLYDEIKKSIIQCETKLDCKKKELELTQTS 251
                    ++LQ L   + Y  + + K E+L + I   + + E  L C K       T 
Sbjct: 513 AWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSK------YTD 566

Query: 252 IIELSL---ELHLEEEKLESLQR 271
           ++ ++L   +  + EE  + +QR
Sbjct: 567 LLRIALMAEDEAIFEEAHKQVQR 589

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 74.0 bits (182), Expect = 2e-13
 Identities = 41/251 (16%), Positives = 98/251 (39%), Gaps = 26/251 (10%)

Query: 161  QRRLENLIKDFCEQIELKEKDLRKIRSSIEECEKELVMKEKHASSLQSLIEDYAEELESK 220
             R+    ++D    ++        +R  +   + +++++E  +  +Q  +  +   +   
Sbjct: 831  VRKRYQCMRDATIALQ------ALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYH 884

Query: 221  EKLYDEIKKSIIQCETKLDCKKKELELT-----------------QTSIIELSLELHLEE 263
              L   +    +QC  +    K+EL+                   +  I++L  ++  + 
Sbjct: 885  RTLKAIVY---LQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQN 941

Query: 264  EKLESLQRIVRLRENELDSKEEKLDAMKEEMKKYFNDIELKEREFNGIRKCIEKRSQELT 323
            ++ +SL   +   E    ++ EKL +  E ++    + +        +++ I K  +EL 
Sbjct: 942  KEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELH 1001

Query: 324  LKEKQLKCVQESLEGCRNEFEEKENELISVEKLIDKCSEELELKKKHLCVIENSAAELSD 383
              + + K ++E  +  ++E E+  +EL     L+    EEL  +            E   
Sbjct: 1002 QTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEKKL 1061

Query: 384  ECESNELELDL 394
              E+ +LELDL
Sbjct: 1062 VEETKQLELDL 1072

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 68.6 bits (168), Expect = 1e-11
 Identities = 31/240 (12%), Positives = 85/240 (35%), Gaps = 9/240 (3%)

Query: 128  LVKKSVEEWLEKLDLKMKEVGLVEKSNDKSLVDQRRLENLIKDFCEQIELKEKDLRKIRS 187
            L++  +     ++ L+  +  +++K     L        L      Q   +    ++   
Sbjct: 848  LLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELK 907

Query: 188  SIEECEKELVMKEKHASSLQSLIEDYAEELESKEKLYDEIKKSIIQCETKLDCKKKELEL 247
             ++   + +   +K    L++ I     +++ + K Y  + + +   E     + ++L  
Sbjct: 908  KLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRS 967

Query: 248  TQTSIIELSLELHLEEEKLESLQRIVRLRENELDSKEEKLDAMKEEMKKYFNDIELKERE 307
                +     E      ++ SLQ  +     EL   + +   ++E   KY ++ E    E
Sbjct: 968  DVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSE 1027

Query: 308  FNGIRKCIEKRSQELTLKEKQLKCVQESLEGCRNEFEEKENELISVEKLIDKCSEELELK 367
                   ++   +EL    +++    + +       E  E +L+   K ++    +  L+
Sbjct: 1028 LKEQNTLLKTEKEEL---NRRIHDQAKEIT------ETMEKKLVEETKQLELDLNDERLR 1078

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 67.1 bits (164), Expect = 3e-11
 Identities = 38/269 (14%), Positives = 98/269 (36%), Gaps = 21/269 (7%)

Query: 67   IRLLDQRAKEIESKESDLVL---AERRIKECNFELACKEKQLELVRKRIGECECELQLKE 123
             R+   R +    +++ + L       +    +++  +E +  +++K +      +    
Sbjct: 826  QRMYVVRKRYQCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHR 885

Query: 124  GELNLV--KKSVEEWLEKLDLKMKEVGLVEKSNDKSLVDQRRLENLIKDFCEQIELKEKD 181
                +V  +      + K +LK  +  +  +S ++       LEN I     +I+ + K+
Sbjct: 886  TLKAIVYLQCCYRRMMAKRELKKLK--IEARSVERYKKLHIGLENKIMQLQRKIDEQNKE 943

Query: 182  LRKIRSSIEECEKELVMKEKHASSLQSLIEDYAEELESKEKLYDEIKKSIIQCETKLDCK 241
             + +   +   E     + +    L+S +E      E  +   + +              
Sbjct: 944  YKSLLEKMNNLEITYSTETE---KLRSDVERLRMSEEEAKNATNRVLS-----------L 989

Query: 242  KKELELTQTSIIELSLELHLEEEKLESLQRIVRLRENELDSKEEKLDAMKEEMKKYFNDI 301
            ++E+   +  + +   E    EE  +  +       +EL  +   L   KEE+ +  +D 
Sbjct: 990  QEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQ 1049

Query: 302  ELKEREFNGIRKCIEKRSQELTLKEKQLK 330
              +  E    +   E +  EL L +++L+
Sbjct: 1050 AKEITETMEKKLVEETKQLELDLNDERLR 1078

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 60.1 bits (146), Expect = 3e-09
 Identities = 50/305 (16%), Positives = 115/305 (37%), Gaps = 19/305 (6%)

Query: 194  KELVMKEKHASSLQSLIEDYAEELESKEKLYDEIKKSIIQCETKLDCKKKELELTQTSII 253
            K+ +   + A ++Q  +  +     +   L       IIQ   ++   +K  +  + + I
Sbjct: 785  KKYMRMRRAAITIQRYVRGHQARCYA-TFLRRTRAAIIIQKFQRMYVVRKRYQCMRDATI 843

Query: 254  ELSLELHLEEEKLESLQRIVRLRENELDSKEEKLDAMKEEMKKYFNDIELKEREFNGIRK 313
             L   L     + +    +   +   +        A     +     + L+         
Sbjct: 844  ALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQC-------- 895

Query: 314  CIEKRSQELTLKEKQLKCVQESLEGCRNEFEEKENELISVEKLIDKCSEELELKKKHLCV 373
                R      + K+LK    S+E  +      EN+   + +L  K  E+ +  K  L  
Sbjct: 896  --CYRRMMAKRELKKLKIEARSVERYKKLHIGLENK---IMQLQRKIDEQNKEYKSLLEK 950

Query: 374  IENSAAELSDECESNELELDLIQTMAIGYLKQLKEKEKQFHSLKEALDERWQDLEIKERK 433
            + N     S E E    +++ ++       ++ K    +  SL+E + +  ++L   + +
Sbjct: 951  MNNLEITYSTETEKLRSDVERLRMS----EEEAKNATNRVLSLQEEIAKLRKELHQTQTE 1006

Query: 434  FEERVKEFELREKEIESIRKAVEDRSKNLELKEKKLSNNLHLQVK-IEQPESLKGNEGTK 492
             +   +  +  + E E +   +++++  L+ ++++L+  +H Q K I +    K  E TK
Sbjct: 1007 KKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEKKLVEETK 1066

Query: 493  QLSLQ 497
            QL L 
Sbjct: 1067 QLELD 1071

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 51.6 bits (124), Expect = 1e-06
 Identities = 42/240 (17%), Positives = 83/240 (34%), Gaps = 8/240 (3%)

Query: 65   SKIRLLDQRAKEIESKESDLVLAERRIKECNFELACKEKQLELVRKRIGECECELQLKEG 124
            + +R    R K          +  +  K     LA       L      +C     + + 
Sbjct: 847  ALLRGYLVRNKYQMMLREHKSIIIQ--KHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKR 904

Query: 125  ELNLVKKSVEEWLEKLDLKMKEVGLVEKSNDKSLVDQRRLENLIKDFCEQIELKEKDLRK 184
            EL  +K           L +     + +   K     +  ++L++           +  K
Sbjct: 905  ELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEK 964

Query: 185  IRSSIEECEKELVMKEKHASSLQSLIEDYAEELESKEKLYDEIKKSIIQCETKLDCKKKE 244
            +RS +E         +   + + SL E+ A+  +   +   E K      E   D  K E
Sbjct: 965  LRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTI----EEWADKYKHE 1020

Query: 245  LELTQTSIIELSLELHLEEEKLESLQRIVRLRENELDSKEEKLDAMKEEMKKYFNDIELK 304
             E   + + E +  L  E+E+L   +RI    +   ++ E+KL    ++++   ND  L+
Sbjct: 1021 TEQLVSELKEQNTLLKTEKEELN--RRIHDQAKEITETMEKKLVEETKQLELDLNDERLR 1078

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284

 Score = 62.4 bits (151), Expect = 1e-10
 Identities = 48/276 (17%), Positives = 109/276 (39%)

Query: 70  LDQRAKEIESKESDLVLAERRIKECNFELACKEKQLELVRKRIGECECELQLKEGELNLV 129
           +     + E+       AE   K         E +L  ++K++   E EL      L   
Sbjct: 8   MQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSEALKDA 67

Query: 130 KKSVEEWLEKLDLKMKEVGLVEKSNDKSLVDQRRLENLIKDFCEQIELKEKDLRKIRSSI 189
           ++ +E   +K      +V  + +       +  R +  +    +++E  EK   +    +
Sbjct: 68  QEKLELAEKKATDAEADVASLNRRIQLFEEELDRAQERLATALQKLEEAEKAADESERGM 127

Query: 190 EECEKELVMKEKHASSLQSLIEDYAEELESKEKLYDEIKKSIIQCETKLDCKKKELELTQ 249
           +  E      E+     +  +++     E  ++ Y+E+ + ++  E+ L+  ++  EL++
Sbjct: 128 KVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSE 187

Query: 250 TSIIELSLELHLEEEKLESLQRIVRLRENELDSKEEKLDAMKEEMKKYFNDIELKEREFN 309
               EL  E+      L+SL+        + D  EE++  + +++K+     E  ER   
Sbjct: 188 GKCAELEEEIKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVT 247

Query: 310 GIRKCIEKRSQELTLKEKQLKCVQESLEGCRNEFEE 345
            + K I+    EL  ++ + K + E L+   N+   
Sbjct: 248 KLEKSIDDLEDELYAQKLKYKAISEELDHALNDMTS 283

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284

 Score = 61.2 bits (148), Expect = 4e-10
 Identities = 45/283 (15%), Positives = 120/283 (42%)

Query: 189 IEECEKELVMKEKHASSLQSLIEDYAEELESKEKLYDEIKKSIIQCETKLDCKKKELELT 248
           ++  +K++ M +    +     ++   + ++ E    +++  ++  + KL   + EL+  
Sbjct: 1   MDAIKKKMQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKY 60

Query: 249 QTSIIELSLELHLEEEKLESLQRIVRLRENELDSKEEKLDAMKEEMKKYFNDIELKEREF 308
             ++ +   +L L E+K    +  V      +   EE+LD  +E +      +E  E+  
Sbjct: 61  SEALKDAQEKLELAEKKATDAEADVASLNRRIQLFEEELDRAQERLATALQKLEEAEKAA 120

Query: 309 NGIRKCIEKRSQELTLKEKQLKCVQESLEGCRNEFEEKENELISVEKLIDKCSEELELKK 368
           +   + ++         E++++  +  L+  ++  E+ + +   V + +     +LE  +
Sbjct: 121 DESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAE 180

Query: 369 KHLCVIENSAAELSDECESNELELDLIQTMAIGYLKQLKEKEKQFHSLKEALDERWQDLE 428
           +   + E   AEL +E ++    L  ++  A  Y ++  + E++   L + L E     E
Sbjct: 181 ERAELSEGKCAELEEEIKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAE 240

Query: 429 IKERKFEERVKEFELREKEIESIRKAVEDRSKNLELKEKKLSN 471
             ER   +  K  +  E E+ + +   +  S+ L+     +++
Sbjct: 241 FAERSVTKLEKSIDDLEDELYAQKLKYKAISEELDHALNDMTS 283

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284

 Score = 57.7 bits (139), Expect = 5e-09
 Identities = 47/283 (16%), Positives = 119/283 (42%)

Query: 105 LELVRKRIGECECELQLKEGELNLVKKSVEEWLEKLDLKMKEVGLVEKSNDKSLVDQRRL 164
           ++ ++K++   + + +      +  +   +   ++      E+  ++K    +  +  + 
Sbjct: 1   MDAIKKKMQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKY 60

Query: 165 ENLIKDFCEQIELKEKDLRKIRSSIEECEKELVMKEKHASSLQSLIEDYAEELESKEKLY 224
              +KD  E++EL EK      + +    + + + E+     Q  +    ++LE  EK  
Sbjct: 61  SEALKDAQEKLELAEKKATDAEADVASLNRRIQLFEEELDRAQERLATALQKLEEAEKAA 120

Query: 225 DEIKKSIIQCETKLDCKKKELELTQTSIIELSLELHLEEEKLESLQRIVRLRENELDSKE 284
           DE ++ +   E++    ++++E+ +  + E        + K E + R + + E++L+  E
Sbjct: 121 DESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAE 180

Query: 285 EKLDAMKEEMKKYFNDIELKEREFNGIRKCIEKRSQELTLKEKQLKCVQESLEGCRNEFE 344
           E+ +  + +  +   +I+        +    EK SQ+    E+++K + + L+      E
Sbjct: 181 ERAELSEGKCAELEEEIKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAE 240

Query: 345 EKENELISVEKLIDKCSEELELKKKHLCVIENSAAELSDECES 387
             E  +  +EK ID   +EL  +K     I        ++  S
Sbjct: 241 FAERSVTKLEKSIDDLEDELYAQKLKYKAISEELDHALNDMTS 283

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284

 Score = 57.0 bits (137), Expect = 9e-09
 Identities = 43/279 (15%), Positives = 116/279 (41%)

Query: 150 VEKSNDKSLVDQRRLENLIKDFCEQIELKEKDLRKIRSSIEECEKELVMKEKHASSLQSL 209
           ++K      +D+    +   +     +  E   +++   +   +K+L   E         
Sbjct: 4   IKKKMQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSEA 63

Query: 210 IEDYAEELESKEKLYDEIKKSIIQCETKLDCKKKELELTQTSIIELSLELHLEEEKLESL 269
           ++D  E+LE  EK   + +  +     ++   ++EL+  Q  +     +L   E+  +  
Sbjct: 64  LKDAQEKLELAEKKATDAEADVASLNRRIQLFEEELDRAQERLATALQKLEEAEKAADES 123

Query: 270 QRIVRLRENELDSKEEKLDAMKEEMKKYFNDIELKEREFNGIRKCIEKRSQELTLKEKQL 329
           +R +++ E+     EEK++  + ++K+  +  E  +R++  + + +     +L   E++ 
Sbjct: 124 ERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERA 183

Query: 330 KCVQESLEGCRNEFEEKENELISVEKLIDKCSEELELKKKHLCVIENSAAELSDECESNE 389
           +  +        E +   N L S+E   +K S++ +  ++ + V+ +   E     E  E
Sbjct: 184 ELSEGKCAELEEEIKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAE 243

Query: 390 LELDLIQTMAIGYLKQLKEKEKQFHSLKEALDERWQDLE 428
             +  ++        +L  ++ ++ ++ E LD    D+ 
Sbjct: 244 RSVTKLEKSIDDLEDELYAQKLKYKAISEELDHALNDMT 282

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284

 Score = 55.0 bits (132), Expect = 4e-08
 Identities = 50/276 (18%), Positives = 120/276 (43%), Gaps = 7/276 (2%)

Query: 43  KDLEEHLDISMKSLEKQSNDADSKIRLLDQRAKEIESKESDLVLAERRIKECNFELACKE 102
           + L+   + ++   ++   D  +      Q   E+ S +  L   E  + + +  L   +
Sbjct: 9   QMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSEALKDAQ 68

Query: 103 KQLELVRKRIGECECELQLKEGELNLVKKSVEEWLEKLDLKMKEVGLVEKSNDKSLVDQR 162
           ++LEL  K+  + E ++      + L ++ ++   E+L   ++++   EK+ D+S    +
Sbjct: 69  EKLELAEKKATDAEADVASLNRRIQLFEEELDRAQERLATALQKLEEAEKAADESERGMK 128

Query: 163 RLENLIKDFCEQIELKEKDLRKIRSSIEECEKELVMKEKHASSLQSLIEDYAEELESKEK 222
            +E+  +   E++E++E  L++ +   E+ +++     +    ++S +E   E  E  E 
Sbjct: 129 VIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEG 188

Query: 223 LYDEIKKSIIQCETKLDCKK-------KELELTQTSIIELSLELHLEEEKLESLQRIVRL 275
              E+++ I      L   +       ++ +  +  I  LS +L   E + E  +R V  
Sbjct: 189 KCAELEEEIKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTK 248

Query: 276 RENELDSKEEKLDAMKEEMKKYFNDIELKEREFNGI 311
            E  +D  E++L A K + K    +++    +   I
Sbjct: 249 LEKSIDDLEDELYAQKLKYKAISEELDHALNDMTSI 284

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284

 Score = 50.8 bits (121), Expect = 9e-07
 Identities = 42/296 (14%), Positives = 121/296 (40%), Gaps = 14/296 (4%)

Query: 70  LDQRAKEIESKESDLVLAERRIKECNFELACKEKQLELVRKRIGECECELQLKEGELNLV 129
           +D   K+++  + D   A  R  E   +    E + + +   +   + +L+  E EL+  
Sbjct: 1   MDAIKKKMQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKY 60

Query: 130 KKSVEEWLEKLDLKMKEVGLVEKSNDKSLVDQRRLENLIKDFCEQIELKEKDLRKIRSSI 189
            +++++  EKL+L  K+                  E  +     +I+L E++L + +  +
Sbjct: 61  SEALKDAQEKLELAEKKA--------------TDAEADVASLNRRIQLFEEELDRAQERL 106

Query: 190 EECEKELVMKEKHASSLQSLIEDYAEELESKEKLYDEIKKSIIQCETKLDCKKKELELTQ 249
               ++L   EK A   +  ++      +  E+  +  +  + + +   +   ++ E   
Sbjct: 107 ATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVA 166

Query: 250 TSIIELSLELHLEEEKLESLQRIVRLRENELDSKEEKLDAMKEEMKKYFNDIELKEREFN 309
             ++ +  +L   EE+ E  +      E E+ +    L +++ + +KY    +  E E  
Sbjct: 167 RKLVIIESDLERAEERAELSEGKCAELEEEIKTVTNNLKSLEAQAEKYSQKEDKYEEEIK 226

Query: 310 GIRKCIEKRSQELTLKEKQLKCVQESLEGCRNEFEEKENELISVEKLIDKCSEELE 365
            +   +++        E+ +  +++S++   +E   ++ +  ++ + +D    ++ 
Sbjct: 227 VLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEELDHALNDMT 282

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284

 Score = 49.6 bits (118), Expect = 2e-06
 Identities = 38/250 (15%), Positives = 100/250 (40%)

Query: 41  QWKDLEEHLDISMKSLEKQSNDADSKIRLLDQRAKEIESKESDLVLAERRIKECNFELAC 100
           + K LE+ L    K L+   ++ D     L    +++E  E     AE  +   N  +  
Sbjct: 35  RSKQLEDELVSLQKKLKATEDELDKYSEALKDAQEKLELAEKKATDAEADVASLNRRIQL 94

Query: 101 KEKQLELVRKRIGECECELQLKEGELNLVKKSVEEWLEKLDLKMKEVGLVEKSNDKSLVD 160
            E++L+  ++R+     +L+  E   +  ++ ++    +     +++ + E    ++   
Sbjct: 95  FEEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHI 154

Query: 161 QRRLENLIKDFCEQIELKEKDLRKIRSSIEECEKELVMKEKHASSLQSLIEDYAEELESK 220
               +   ++   ++ + E DL +     E  E +    E+   ++ + ++    + E  
Sbjct: 155 AEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEEIKTVTNNLKSLEAQAEKY 214

Query: 221 EKLYDEIKKSIIQCETKLDCKKKELELTQTSIIELSLELHLEEEKLESLQRIVRLRENEL 280
            +  D+ ++ I     KL   +   E  + S+ +L   +   E++L + +   +    EL
Sbjct: 215 SQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEEL 274

Query: 281 DSKEEKLDAM 290
           D     + ++
Sbjct: 275 DHALNDMTSI 284

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284

 Score = 47.7 bits (113), Expect = 8e-06
 Identities = 40/269 (14%), Positives = 114/269 (42%)

Query: 125 ELNLVKKSVEEWLEKLDLKMKEVGLVEKSNDKSLVDQRRLENLIKDFCEQIELKEKDLRK 184
           ++ ++K   E  L++ D    +    E  + +   +   L+  +K   ++++   + L+ 
Sbjct: 7   KMQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSEALKD 66

Query: 185 IRSSIEECEKELVMKEKHASSLQSLIEDYAEELESKEKLYDEIKKSIIQCETKLDCKKKE 244
            +  +E  EK+    E   +SL   I+ + EEL+  ++      + + + E   D  ++ 
Sbjct: 67  AQEKLELAEKKATDAEADVASLNRRIQLFEEELDRAQERLATALQKLEEAEKAADESERG 126

Query: 245 LELTQTSIIELSLELHLEEEKLESLQRIVRLRENELDSKEEKLDAMKEEMKKYFNDIELK 304
           +++ ++   +   ++ ++E +L+  + I    + + +    KL  ++ ++++     EL 
Sbjct: 127 MKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELS 186

Query: 305 EREFNGIRKCIEKRSQELTLKEKQLKCVQESLEGCRNEFEEKENELISVEKLIDKCSEEL 364
           E +   + + I+  +  L   E Q +   +  +    E +   ++L   E   +     +
Sbjct: 187 EGKCAELEEEIKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSV 246

Query: 365 ELKKKHLCVIENSAAELSDECESNELELD 393
              +K +  +E+       + ++   ELD
Sbjct: 247 TKLEKSIDDLEDELYAQKLKYKAISEELD 275

>2xs1_A Programmed cell death 6-interacting protein; protein transport-viral protein complex, cell cycle; 2.30A {Homo sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A 2ojq_A Length = 704

 Score = 55.7 bits (133), Expect = 7e-08
 Identities = 58/430 (13%), Positives = 144/430 (33%), Gaps = 18/430 (4%)

Query: 57  EKQSNDADSKIRLLDQRAKEIESKESDLVLAERRIKECNFELACKEKQLELVRKRIGECE 116
           +    +  ++++   +  K + S+  + V  +    + N  LA  +K  + +        
Sbjct: 273 QYYFGEEIARLQHAAELIKTVASRYDEYVNVKDFSDKINRALAAAKKDNDFIYHDRVPDL 332

Query: 117 CELQLKEGELNLVKKSVEEWLEKLDLKMKEVGLVEKSNDKSLVDQRRLENLIKDFCEQIE 176
            +L        +    V   + +    + E  +            +R  +L+     Q+ 
Sbjct: 333 KDLDPIGKATLVKSTPVNVPISQKFTDLFEKMVPVSVQQSLAAYNQRKADLVNRSIAQMR 392

Query: 177 LKEKDLRKIRSSIEECEKELVMKEKHASSLQSLIEDYAE-----ELESKEKLYDEIKKSI 231
                   + +S+       +      +  QS++           +++ ++L  E+ + +
Sbjct: 393 EATTLANGVLASLNL--PAAIEDVSGDTVPQSILTKSRSVIEQGGIQTVDQLIKELPELL 450

Query: 232 IQCETKLDCKKKELELTQTSIIELSLELHLEEEKLESLQRIVRLREN------ELDSKEE 285
            +    LD   + L+  + +  +L  +     ++  S +    LR         LD   +
Sbjct: 451 QRNREILDESLRLLDEEEATDNDLRAKFKERWQRTPSNELYKPLRAEGTNFRTVLDKAVQ 510

Query: 286 KLDAMKEEMKKYFNDIELKEREFNGIRKCIEKRSQELTLK----EKQLKCVQESLEGCRN 341
               +KE  + + + I L  +    +   I   +   T++       LK +  +L+  + 
Sbjct: 511 ADGQVKECYQSHRDTIVLLCKPEPELNAAIPSANPAKTMQGSEVVNVLKSLLSNLDEVKK 570

Query: 342 EFEEKENELISVEKLIDKCSEELELKKKHLCVIENSAAELSDECESNELELDLIQTMAIG 401
           E E  EN+L SV   +         +   +     S  EL         ++        G
Sbjct: 571 EREGLENDLKSVNFDMTSKFLTALAQDGVINEEALSVTELDRVYGGLTTKVQESLKKQEG 630

Query: 402 YLKQLKEKEKQFHSLKEALDERWQDLEIKERKFEERVKEFELREKEIESIRKAVEDRSKN 461
            LK ++   ++F  +K++ +E     E   +        F      ++   K   + ++ 
Sbjct: 631 LLKNIQVSHQEFSKMKQSNNEA-NLREEVLKNLATAYDNFVELVANLKEGTKFYNELTEI 689

Query: 462 LELKEKKLSN 471
           L   + K S+
Sbjct: 690 LVRFQNKCSD 699

>2xs1_A Programmed cell death 6-interacting protein; protein transport-viral protein complex, cell cycle; 2.30A {Homo sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A 2ojq_A Length = 704

 Score = 48.8 bits (115), Expect = 8e-06
 Identities = 32/275 (11%), Positives = 97/275 (35%), Gaps = 10/275 (3%)

Query: 40  VQWKDLEEHLDISMKSLEKQSNDADSKIRLLDQRAKEIESKESDLVLAERRIKECNFELA 99
           V  +   + +D  +K L +        +    +   E E+ ++DL    R   +  ++  
Sbjct: 430 VIEQGGIQTVDQLIKELPELLQRNREILDESLRLLDEEEATDNDL----RAKFKERWQRT 485

Query: 100 CKEKQLELVRKRIGECECELQLKEGELNLVKKSVEEWLEKLDLKMKEVG----LVEKSND 155
              +  + +R         L         VK+  +   + + L  K        +  +N 
Sbjct: 486 PSNELYKPLRAEGTNFRTVLDKAVQADGQVKECYQSHRDTIVLLCKPEPELNAAIPSANP 545

Query: 156 KSLVDQRRLENLIKDFCEQIELKEKDLRKIRSSIEECEKELVMKEKHASSLQSLIEDYAE 215
              +    + N++K     ++  +K+   + + ++    ++  K   A +   +I + A 
Sbjct: 546 AKTMQGSEVVNVLKSLLSNLDEVKKEREGLENDLKSVNFDMTSKFLTALAQDGVINEEAL 605

Query: 216 ELESKEKLYDEIKKSIIQCETKLDCKKKELELTQTSIIELSLELHLEEEKLESLQRIVRL 275
            +   +++Y  +   + +   K +   K ++++     ++    +    + E L+ +   
Sbjct: 606 SVTELDRVYGGLTTKVQESLKKQEGLLKNIQVSHQEFSKMKQSNNEANLREEVLKNLATA 665

Query: 276 RE--NELDSKEEKLDAMKEEMKKYFNDIELKEREF 308
            +   EL +  ++      E+ +     + K  + 
Sbjct: 666 YDNFVELVANLKEGTKFYNELTEILVRFQNKCSDI 700

>2xs1_A Programmed cell death 6-interacting protein; protein transport-viral protein complex, cell cycle; 2.30A {Homo sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A 2ojq_A Length = 704

 Score = 42.6 bits (99), Expect = 7e-04
 Identities = 32/288 (11%), Positives = 83/288 (28%), Gaps = 19/288 (6%)

Query: 207 QSLIEDYAEELESKEKLYDEIKKSIIQCETKLDCKKKEL---ELTQTSIIELSLELHLEE 263
             L+     ++     L + +  S+       D     +    LT++  +     +   +
Sbjct: 381 ADLVNRSIAQMREATTLANGVLASLNLPAAIEDVSGDTVPQSILTKSRSVIEQGGIQTVD 440

Query: 264 EKLESLQRIVRLRENELDSKEEKLDAMKEEMKKYFNDIELK------EREFNGIRKCIEK 317
           + ++ L  +++     LD     LD  +          + +         +  +R     
Sbjct: 441 QLIKELPELLQRNREILDESLRLLDEEEATDNDLRAKFKERWQRTPSNELYKPLRAEGTN 500

Query: 318 RSQELTLKEKQLKCVQESLEGCRNEFEEKENELISVEKLIDKCSEELELKKKHLCVIENS 377
               L    +    V+E  +  R+           +   I   +    ++          
Sbjct: 501 FRTVLDKAVQADGQVKECYQSHRDTIVLLCKPEPELNAAIPSANPAKTMQGS-------- 552

Query: 378 AAELSDECESNELELDLIQTMAIGYLKQLKEKEKQFHSLKEALDERWQDLEIKERKFEER 437
             E+ +  +S    LD ++    G    LK       S       +   +  +     E 
Sbjct: 553 --EVVNVLKSLLSNLDEVKKEREGLENDLKSVNFDMTSKFLTALAQDGVINEEALSVTEL 610

Query: 438 VKEFELREKEIESIRKAVEDRSKNLELKEKKLSNNLHLQVKIEQPESL 485
            + +     +++   K  E   KN+++  ++ S       +    E +
Sbjct: 611 DRVYGGLTTKVQESLKKQEGLLKNIQVSHQEFSKMKQSNNEANLREEV 658

>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1 Length = 602

 Score = 54.7 bits (130), Expect = 1e-07
 Identities = 42/388 (10%), Positives = 119/388 (30%), Gaps = 12/388 (3%)

Query: 97  ELACKEKQLELVRKRIGECECELQLKEGELNLVKKSVEEWLEKLDLKMKEVGLVEKSNDK 156
           E+   +  L   +K       E   +       ++  E  L+ L     +   + +   +
Sbjct: 54  EITAYKNTLSAQQKENENKRTEAGKRLSAAIAAREKDENTLKTLRAGNADAADITRQEFR 113

Query: 157 SLVDQRRLENLIKDFCEQIELKEKDLRKIRSSIEECEKELVMKEKHASSLQSLIEDYAEE 216
            L  + R         E        L      +      L +  + A SL    E   ++
Sbjct: 114 LLQAELREYGFRT---EIAGYDALRLHTESRMLFADADSLRISPREARSLIEQAEKRQKD 170

Query: 217 LESKEKLYDEIKKSIIQCETKLDCKKKELELTQTSIIELSLELHLEEEKLESLQRIVRLR 276
            ++ +K   ++     + +  LD +  ELE            L + + +   L       
Sbjct: 171 AQNADKKAADMLAEYERRKGILDTRLSELEK------NGGAALAVLDAQQARLLGQQTRN 224

Query: 277 ENELDSKEEKLDAMKEEMKKYFNDIELKEREFNGIRKCIEKRSQELTLKEKQLKCVQESL 336
           +  +     KL ++ E +    N +   E++    +   + ++     K        +S+
Sbjct: 225 DRAISEARNKLSSVTESLNTARNALTRAEQQLTQQKNTPDGKTIVSPEKFPGRSSTNDSI 284

Query: 337 EGCRNEFEEKENELISVEKLIDKCSEELELKKKHLCVIENSAAELSDECESNELELDLIQ 396
               +       ++ +   + ++ +    L    L   +     L+D       +++  +
Sbjct: 285 VVSGDPRFAGTIKITTSAVIDNRANLNYLLSHSGL---DYKRNILNDRNPVVTEDVEGDK 341

Query: 397 TMAIGYLKQLKEKEKQFHSLKEALDERWQDLEIKERKFEERVKEFELREKEIESIRKAVE 456
            +    + +  +  ++    +  +      +         R  E +     + ++ K  E
Sbjct: 342 KIYNAEVAEWDKLRQRLLDARNKITSAESAVNSARNNLSARTNEQKHANDALNALLKEKE 401

Query: 457 DRSKNLELKEKKLSNNLHLQVKIEQPES 484
           +    L    +K++     Q +++  + 
Sbjct: 402 NIRNQLSGINQKIAEEKRKQDELKATKD 429

>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1 Length = 602

 Score = 49.7 bits (117), Expect = 4e-06
 Identities = 51/439 (11%), Positives = 122/439 (27%), Gaps = 5/439 (1%)

Query: 178 KEKDLRKIRSSIEECEKELVMKEKHASSLQSLIEDYAEELESKEKLYDEIKKSIIQCETK 237
           +  D    RS IE+ +KE+   +   S+ Q   E+   E   +       ++        
Sbjct: 37  EWVDDSPTRSDIEKRDKEITAYKNTLSAQQKENENKRTEAGKRLSAAIAAREKDENTLKT 96

Query: 238 LDCKKKEL----ELTQTSIIELSLELHLEEEKLESLQRIVRLRENELDSKEEKLDAMKEE 293
           L     +           +     E     E        +      L +  + L     E
Sbjct: 97  LRAGNADAADITRQEFRLLQAELREYGFRTEIAGYDALRLHTESRMLFADADSLRISPRE 156

Query: 294 MKKYFNDIELKEREFNGIRKCIEKRSQELTLKEKQLKCVQESLEGCRN-EFEEKENELIS 352
            +      E ++++     K       E   ++  L      LE          + +   
Sbjct: 157 ARSLIEQAEKRQKDAQNADKKAADMLAEYERRKGILDTRLSELEKNGGAALAVLDAQQAR 216

Query: 353 VEKLIDKCSEELELKKKHLCVIENSAAELSDECESNELELDLIQTMAIGYLKQLKEKEKQ 412
           +     +    +   +  L  +  S     +     E +L   +    G      EK   
Sbjct: 217 LLGQQTRNDRAISEARNKLSSVTESLNTARNALTRAEQQLTQQKNTPDGKTIVSPEKFPG 276

Query: 413 FHSLKEALDERWQDLEIKERKFEERVKEFELREKEIESIRKAVEDRSKNLELKEKKLSNN 472
             S  +++            K                     ++ +   L  +   ++ +
Sbjct: 277 RSSTNDSIVVSGDPRFAGTIKITTSAVIDNRANLNYLLSHSGLDYKRNILNDRNPVVTED 336

Query: 473 LHLQVKIEQPESLKGNEGTKQLSLQSCTMITGKNLQLLLNQHLQKHDLVFGEISHTLTKA 532
           +    KI   E  + ++  ++L      + + ++       +L          +  L   
Sbjct: 337 VEGDKKIYNAEVAEWDKLRQRLLDARNKITSAESAVNSARNNLSARTNEQKHANDALNAL 396

Query: 533 CDPASLVLDAMEGFYPPHSREGDMEFDVSIIRRTCILLLEQLSSVTPEINPQVRDEAMKV 592
                 + + + G     + E   + ++   +       E L SV+ +   +    A ++
Sbjct: 397 LKEKENIRNQLSGINQKIAEEKRKQDELKATKDAINFTTEFLKSVSEKYGAKAEQLAREM 456

Query: 593 AGEWKKKMRVAEDNSLEVL 611
           AG+ K K     + +L+  
Sbjct: 457 AGQAKGKKIRNVEEALKTY 475

>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1 Length = 863

 Score = 54.5 bits (130), Expect = 2e-07
 Identities = 51/481 (10%), Positives = 153/481 (31%), Gaps = 31/481 (6%)

Query: 22  RRSYDLAHAQANSVLNFTVQWKDLEEHLDISMKSLEKQSNDADSKIRLLDQRAKEIESKE 81
             S+  A + A        +   +      + + +E     A   +  + +    +E++ 
Sbjct: 218 VSSFYHAFSGAQKAETAANRICKVLAVNQENEQLMEDYEKLASDLLEWIRRTIPWLENRA 277

Query: 82  SDLVLAERRIKECNFELACKEKQLELVRKRIGECEC----ELQLKEGELNLVKKSVEEWL 137
            +  +   + K  +F    +  +   V+++          + +L+         S  + +
Sbjct: 278 PENTMQAMQQKLEDFRDYRRLHKPPKVQEKCQLEINFNTLQTKLRLSNRPAFMPSEGKMV 337

Query: 138 EKLDLKMKEVGLVEKSNDKSLVD----QRRLENLIKDFCEQIELKEKDLRKIRSSIEECE 193
             ++     +   EK  ++ L++      RL++L + F ++  + E       + +++ +
Sbjct: 338 SDINNAWGGLEQAEKGYEEWLLNEIRRLERLDHLAEKFRQKASIHESWTDGKEAMLQQKD 397

Query: 194 KELVMKEKHASSLQSLIEDYAEELESKEKLYDEIKKSIIQCETKLDCKKKELELTQTSII 253
            E         +L    E +  +L + +   ++I     +           +      I 
Sbjct: 398 YET-ATLSEIKALLKKHEAFESDLAAHQDRVEQIAAIAQELNELDYYDSPSVNARCQKIC 456

Query: 254 E----LSLELHLEEEKLESLQRIVRLRENELDSKEEKLDAMKEEMKKYFNDIELKEREFN 309
           +    L        E LE  ++++   +       ++       M+    D++       
Sbjct: 457 DQWDNLGALTQKRREALERTEKLLETIDQLYLEYAKRAAPFNNWMEGAMEDLQDTFIVHT 516

Query: 310 --GIRKCIEKRSQ---ELTLKEKQLKCVQESLEGCRNEFEEKENELISVEKLIDKCSEEL 364
              I+       Q    L   +K+ + +           +     +           +E+
Sbjct: 517 IEEIQGLTTAHEQFKATLPDADKERQAILGIHNEVSKIVQTYHVNMAGTNPYTTITPQEI 576

Query: 365 ELKKKHLCVIENSAAELSDE----CESNELELDLIQTMAIGYLKQLKEKEKQFHSLKEAL 420
             K +H+  +     +   E     + NE         A      ++ K ++   +   +
Sbjct: 577 NGKWEHVRQLVPRRDQALMEEHARQQQNERLRKQFGAQANVIGPWIQTKMEEIGRISIEM 636

Query: 421 DERWQDLEIKERKFEERVKEFELREKEIESIRKAVEDRSKNLELKEKKLSNNLHLQVKIE 480
               +D     R++E+ +  ++ +  ++E   +         +++E  + +N H    +E
Sbjct: 637 HGTLEDQLNHLRQYEKSIVNYKPKIDQLEGDHQ---------QIQEALIFDNKHTNYTME 687

Query: 481 Q 481
            
Sbjct: 688 H 688

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C* Length = 3245

 Score = 49.1 bits (117), Expect = 9e-06
 Identities = 48/321 (14%), Positives = 113/321 (35%), Gaps = 46/321 (14%)

Query: 134  EEWLEKLDLKMKEVGLVEKSNDKSLVDQRRLENLIKDFCEQIELKEKDLRKIRSSIEECE 193
             E+   LDL+  +         ++ +    L  +     + +      L  I  +I E  
Sbjct: 1823 SEFTRNLDLENPQYIAPPVFIQEAEIMGNNLMAIPPSHRDAVV---SSLVYIHQTIGEAN 1879

Query: 194  KELVMKEKHASSLQSLIEDYAEELESKEKLYDEIKKSIIQCETKLDCKKKELELTQTSII 253
              L+ ++   + +      Y + +     L +E              K+ +LE       
Sbjct: 1880 IRLLKRQGRQNYVTP--RHYLDFINQVVLLINE--------------KRDQLE------- 1916

Query: 254  ELSLELHLEEEKLESLQRIVRLRENELDSKEEKLDAMKEEMKKYFNDIELKEREFNGIRK 313
            E  L L++  +KL   +  V+  +  L  K  +LD   E+  +    +   ++     +K
Sbjct: 1917 EEQLHLNIGLKKLRDTEAQVKDLQVSLAQKNRELDVKNEQANQKLKQMVQDQQAAEIKQK 1976

Query: 314  CIEKRSQELTLKEKQLKCVQESLEGCRNEFE---EKENELISVEKLIDKCSEELELKKKH 370
               +   +L ++ K++   +        + E       E+  +E   ++   + +     
Sbjct: 1977 DARELQVQLDVRNKEIAVQKVKAYADLEKAEPTGPLREEVEQLENAANELKLKQDEIVAT 2036

Query: 371  LCVIENSAAELSDECESNELELDLIQTMAIGYLKQLKEKEKQFHSLKEALD---ERWQDL 427
            +  +E S A   +E  +   E + I+T +     ++K K  +  +L + L+    RW   
Sbjct: 2037 ITALEKSIATYKEEYATLIRETEQIKTES----SKVKNKVDRSIALLDNLNSERGRW--- 2089

Query: 428  EIKERKFEERVKEFELREKEI 448
                   E++ + F  +   +
Sbjct: 2090 -------EQQSENFNTQMSTV 2103

>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010

 Score = 47.7 bits (114), Expect = 2e-05
 Identities = 24/208 (11%), Positives = 70/208 (33%), Gaps = 22/208 (10%)

Query: 220  KEKLYDEIKKSIIQCETKLDCKKKELELTQTSIIELSLE-----LHLEEEKLESLQRIVR 274
            K +   E++      +TKL   K+E  +    +    ++     L   E++     RI  
Sbjct: 819  KGQEVSELEAIYNSLQTKLRLIKREPFVAPAGLTPNEIDSTWSALEKAEQEHAEALRIEL 878

Query: 275  LRENELDSKEEKLDAMKEEMKKYFNDIELKEREFNGIRKCIEKRSQELTLKEKQLKCVQE 334
             R+ ++    +K + + ++++ +     +             +    +T  + +LK ++ 
Sbjct: 879  KRQKKIAVLLQKYNRILKKLENWATTKSVYLGS--------NETGDSITAVQAKLKNLEA 930

Query: 335  SLEGCRNEFEEKENELISVEKLIDKCSEELELKKKHLCVIENSAAELSDECESNELELDL 394
                C++   +  ++L     ++ + +E        L   E      + +    +   + 
Sbjct: 931  FDGECQSLEGQSNSDL---LSILAQLTELNYNGVPEL--TERKDTFFAQQWTGVKSSAET 985

Query: 395  IQTMAIGYLKQLKEKEKQFHSLKEALDE 422
             +      L    E+ ++   L      
Sbjct: 986  YKNT----LLAELERLQKIEDLHHHHHH 1009

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 Length = 430

 Score = 46.2 bits (110), Expect = 4e-05
 Identities = 29/179 (16%), Positives = 70/179 (39%), Gaps = 12/179 (6%)

Query: 155 DKSLVDQRRLENLIKDFCEQIELKEKDLRKIRSSIEECEKELVMKEKHASSLQSLIEDYA 214
           D   V  +     +++  E I +K K+    +  +E+   +  ++        S    Y 
Sbjct: 122 DGKTVSYKDYSIFLEN--ENILIKAKNFLVFQGDVEQIAAQSPVELSRMFEEVSGSIQYK 179

Query: 215 EELESKEKLYDEIKKSIIQCETKLDCKKKELELTQTSIIELSLELHLEEEKLESLQRIVR 274
           +E E  ++  +++ KS  +          EL+  ++  +E+  +        E       
Sbjct: 180 KEYEELKEKIEKLSKSATESIKNRRRIHGELKTYKSPGLEVLFQGPRGSRYDE-----AE 234

Query: 275 LRENELDSKEEKLDAMKEEMKKYFNDIELKERE-----FNGIRKCIEKRSQELTLKEKQ 328
            R   ++++ E+L A ++++   F  I+ K +E     F+ +   ++   +ELT     
Sbjct: 235 GRFEVINNETEQLKAEEKKILNQFLKIKKKRKELFEKTFDYVSDHLDAIYRELTKNPNS 293

>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B* Length = 1038

 Score = 45.3 bits (107), Expect = 1e-04
 Identities = 38/257 (14%), Positives = 94/257 (36%), Gaps = 25/257 (9%)

Query: 61   NDADSKIRLLDQRAKEIESKESDLVLAERRIKECNFELACKEKQLELVRKRIGECECELQ 120
                +  ++       +E  +++  + + +  E        +++++  R    +   + Q
Sbjct: 799  ATLKALQQIDLSDPVAVEKFKAEHYVDDEKFAELQTIRLPADRKIQDYRSAYNDIR-DWQ 857

Query: 121  LKEGELNLVKKSVEEWLEKLDLKMKEVGLVEKSNDKSLVDQRRLENLIKDFCEQIELKEK 180
             +E E    +KS  +W + +  ++  +           ++   +  LI +   Q + K +
Sbjct: 858  RREKEAEKKEKSTTDW-DDVVFEVDLL-------KSQEINLDYILGLIFEHNRQNKGKGE 909

Query: 181  DLRKIRSSIEECEKELVMKEKHASSLQSLIEDYAEELESKEKLYDEIKKSIIQCETKLDC 240
             + +++  I      L  + K     + L+ D+ ++    + L D+   SII        
Sbjct: 910  MIEEVKRLIR---SSLGNRAK-----EGLVVDFIQQTN-LDDLPDK--ASIIDAFFTFAQ 958

Query: 241  KKKELELTQTSIIELSLELHLEEEKLESLQRIVRLRENELDSKEEKLDAMKEEMKKYFND 300
            ++++ E        L  E +L E+  +   R    RE   ++  E  + + +        
Sbjct: 959  REQQREAE-----ALIKEENLNEDAAKRYIRTSLKREYATENGTELNETLPKLSPLNPQY 1013

Query: 301  IELKEREFNGIRKCIEK 317
               K+  F  I   IEK
Sbjct: 1014 KTKKQAVFQKIVSFIEK 1030

>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B* Length = 1038

 Score = 43.0 bits (101), Expect = 6e-04
 Identities = 38/320 (11%), Positives = 109/320 (34%), Gaps = 7/320 (2%)

Query: 129  VKKSVEEWLEKLDLKMKEVGLVEKSNDKSL--VDQRRLENLIKDFCEQI-ELKEKDLRKI 185
            +++S  + +     K  +  ++EKS  + +            + F   + EL+++     
Sbjct: 708  LERSTIDAITLFGDKNTKNVVLEKSYTEYMEGFTDAATGEAKRGFMTVVSELEQRFPDPT 767

Query: 186  RSSIEECEKELVMKEKHASSLQSLIEDYAEELESKEKLYDEIKKSIIQCETKLDCKKKEL 245
                E+ +K+ V         ++++++Y E    K     ++   +   + K +    + 
Sbjct: 768  SIESEKEKKDFVKLFGEYLRAENILQNYDEFATLKALQQIDLSDPVAVEKFKAEHYVDDE 827

Query: 246  ELTQTSIIELSLELHLEEEKLESLQRIVRLRENELDSKEEKLDAMKEEMKKYFNDIELKE 305
            +  +   I L  +  +++ +          R  +   K+EK     +++    + ++ +E
Sbjct: 828  KFAELQTIRLPADRKIQDYRSAYNDIRDWQRREKEAEKKEKSTTDWDDVVFEVDLLKSQE 887

Query: 306  REFNGIRKCIEKRSQELTLKEKQLKCVQESLEGCRNEFEEKE--NELISVEKLIDKCSEE 363
               + I   I + +++   K + ++ V+  +        ++    + I    L D   + 
Sbjct: 888  INLDYILGLIFEHNRQNKGKGEMIEEVKRLIRSSLGNRAKEGLVVDFIQQTNLDDLPDKA 947

Query: 364  LELKKKHLCVIENSAAELSDECESNELELDLIQTMAIGYLK--QLKEKEKQFHSLKEALD 421
              +             E     +   L  D  +      LK     E   + +     L 
Sbjct: 948  SIIDAFFTFAQREQQREAEALIKEENLNEDAAKRYIRTSLKREYATENGTELNETLPKLS 1007

Query: 422  ERWQDLEIKERKFEERVKEF 441
                  + K++   +++  F
Sbjct: 1008 PLNPQYKTKKQAVFQKIVSF 1027

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} Length = 256

 Score = 43.6 bits (102), Expect = 2e-04
 Identities = 17/157 (10%), Positives = 59/157 (37%), Gaps = 5/157 (3%)

Query: 174 QIELKEKDLRKIRSSIEECEKELVMKEKHASSLQSLIEDYAEELESKEKLYDEIKKSIIQ 233
           +I   +K++  +   I E  K+L        +    I +  EE  + +    + ++++  
Sbjct: 12  EISHLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQD 71

Query: 234 CETKLDCKKKELELTQTSIIELSLELHLEEEKLESLQRIVRLRENELDSKEEKLDAMKEE 293
              K+   +K++   ++       EL     + +  +        E+++ + ++    E+
Sbjct: 72  TNAKIASIQKKMSEIKSER-----ELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEK 126

Query: 294 MKKYFNDIELKEREFNGIRKCIEKRSQELTLKEKQLK 330
            +    ++   E+    +   +E   + +   ++ + 
Sbjct: 127 QEDLKKEMLELEKLALELESLVENEVKNIKETQQIIF 163

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} Length = 256

 Score = 42.4 bits (99), Expect = 4e-04
 Identities = 31/185 (16%), Positives = 78/185 (42%), Gaps = 7/185 (3%)

Query: 96  FELACKEKQLELVRKRIGECECELQLKEGELNLVKKSVEEWLEKLDLKMKEVGLVEKSND 155
            E++  +K+++ +   I E   +L     +     K++    E+      +V   E++  
Sbjct: 11  IEISHLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQ 70

Query: 156 KSLVDQRRLENLIKDFCEQIELKEKDLRKIRSSIEECEKELVMKEKHASSLQSLIEDYAE 215
            +      ++  + +        E++LR +    +  ++      +   +LQ+ I+  +E
Sbjct: 71  DTNAKIASIQKKMSE-----IKSERELRSLNIEEDIAKERSNQANREIENLQNEIKRKSE 125

Query: 216 ELESKEKLYDEIKKSIIQCETKLDCKKKELELTQTSIIELS--LELHLEEEKLESLQRIV 273
           + E  +K   E++K  ++ E+ ++ + K ++ TQ  I +    L    E +     +RI 
Sbjct: 126 KQEDLKKEMLELEKLALELESLVENEVKNIKETQQIIFKKKEDLVEKTEPKIYSFYERIR 185

Query: 274 RLREN 278
           R  +N
Sbjct: 186 RWAKN 190

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A* Length = 592

 Score = 43.0 bits (100), Expect = 4e-04
 Identities = 39/244 (15%), Positives = 89/244 (36%), Gaps = 4/244 (1%)

Query: 258 ELHLEEEKLESLQRIVRLRENELDSKEEKLDAMKEEMKKYFNDIELKEREFNGIRKCIEK 317
           EL       E     V +R +  D        +  +++K  +D   + +E +   +C   
Sbjct: 352 ELLDLHRDSEREAIEVFIRSSFKDVDHLFQKELAAQLEKKRDDFCKQNQEAS-SDRCSGL 410

Query: 318 RSQELTLKEKQLKCVQESLEGCRNEFEEKENELISVEKLIDKCSEELELKKKHLCVIENS 377
                +  E+++K    S  G    F +K  +L        +   +    ++ L     S
Sbjct: 411 LQVIFSPLEEEVKAGIYSKPGGYRLFVQKLQDLKKKYYEEPRKGIQ---AEEILQTYLKS 467

Query: 378 AAELSDECESNELELDLIQTMAIGYLKQLKEKEKQFHSLKEALDERWQDLEIKERKFEER 437
              ++D     +  L   +        + +  +     L E   +  Q +E KER ++E 
Sbjct: 468 KESMTDAILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEH 527

Query: 438 VKEFELREKEIESIRKAVEDRSKNLELKEKKLSNNLHLQVKIEQPESLKGNEGTKQLSLQ 497
           +K+   + +         ++R+  L+L+E++       Q +    ++   +  TK    +
Sbjct: 528 LKQLTEKMENDRVQLLKEQERTLALKLQEQEQLLKEGFQKESRIMKNEIQDLQTKMRRRK 587

Query: 498 SCTM 501
           +CT+
Sbjct: 588 ACTI 591

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	1060
d1f5na1	300	a.114.1.1 (A:284-583) Interferon-induced guanylate	0.003

>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 300

class: All alpha proteins
fold: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
superfamily: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
family: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
domain: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.6 bits (89), Expect = 0.003
 Identities = 36/224 (16%), Positives = 78/224 (34%), Gaps = 4/224 (1%)

Query: 258 ELHLEEEKLESLQRIVRLRENELDSKEEKLDAMKEEMKKYFNDIELKEREFNGIRKCIEK 317
           EL       E     V +R +  D        +  +++K  +D   K+ +     +C   
Sbjct: 69  ELLDLHRDSEREAIEVFIRSSFKDVDHLFQKELAAQLEKKRDDF-CKQNQEASSDRCSGL 127

Query: 318 RSQELTLKEKQLKCVQESLEGCRNEFEEKENELISVEKLIDKCSEELELKKKHLCVIENS 377
                +  E+++K    S  G    F +K  +L        +   + E   + L     S
Sbjct: 128 LQVIFSPLEEEVKAGIYSKPGGYRLFVQKLQDLKKKYYEEPRKGIQAE---EILQTYLKS 184

Query: 378 AAELSDECESNELELDLIQTMAIGYLKQLKEKEKQFHSLKEALDERWQDLEIKERKFEER 437
              ++D     +  L   +        + +  +     L E   +  Q +E KER ++E 
Sbjct: 185 KESMTDAILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEH 244

Query: 438 VKEFELREKEIESIRKAVEDRSKNLELKEKKLSNNLHLQVKIEQ 481
           +K+   + +         ++R+  L+L+E++       Q +   
Sbjct: 245 LKQLTEKMENDRVQLLKEQERTLALKLQEQEQLLKEGFQKESRI 288

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00