Citrus Sinensis ID: 001530

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------106
Protein Sequence
MRESSYAGSLAYSGRSSRTDKNVDCPESGEQKIEENSTSLERGLGSYMVGSLPQLKQRKVGSRTNVVSAAPSLRDDDVVQSNEDRSALVKMDHLEKVVTEGSKLSPVGIYSLQPDPAYELEYSKPADACCESCVVKEATIGDIQSEENSSIAGSTGITISQSYNQQHFSTTDSFNKVNSFCTERSNGEDKNVDSSEWRRKSGKKSILPGNNFSCGAEDSWPQHKRRKVEGHLNDYLSASASMREEVVAQSGVNKSLVCEMDQNGHHNMKVESQSSDKLQVDEDKSNSKERDSTHFSFVQELEVPLVSSFNNQGTNSKYCSVEEGAVSNSTRAILDPDKQRAMGGNEALLHLSEKNEQWNSEHLSFDEIGMQEGKCHLEGNGRASQCSVGSPQRKLVDLIGSDQIMPEFEGFILETDNGHSGTAGEDINFDKLDLPKTTIERASVLEQLCKSACMNTPLSHFFTTYKLHQAPNLCQSVPNRLLECIDLRNNPSLNDNIVKQLKASYSCFDEEADHAYQGRSYSDCSLFSSTQPASEIRKPFGSPIGKFWDRITSNSASSEKRGGSNPDLPCISEENENTDEVVNVFQEGISLEVASPVGELWDWKKSNSSSSDKQGSLNPELPFISEEDENTDMVTGVHQGINLEVMPSSVKREPLADITKNPNLTGSVPKTDVFAARSSLESVKTEFSFSRTVRAKQKHVEHISNKKNRRQAKMSHGPSSFGENCINRVSHNRFTKPKLSEKPSLRKGGPSFADRESKHNNIVSNITSFIPLVQQKQAAAIITGKRDVKVKALEAAEAAKRLAVEKENERKMKKEALKLERAKLEQENLKQLELQKKKKEEEKKKKLADMAARKRQREEEERKEKERKRKRVMESRRQQQEHEEKLRAKKEEERKKKEADLLMVSKDETWRDYKRVKDQGEENPAKMKKTESKATVVSTSDARETSIVLQVSEPSTDCGDKSKATGHLEKATENDLVTNQNQEPSYDISPYKDSDNEEEEDDDDRLNTKFIPSWASKRASALIIPSLLSVSPEVIFPPGSFCSISEVLLPRRQQQKMRP
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccHHccccHHHHcccccccccccHHHHHcccccccccccccccccccccccccccccHHHHcHHHHHHHHccccccccEEccccccccccccccccHHHHHccccccccccccccccccccccccccEEEcccccccccccccccccccccccccccccccccccHHHHHHccccccccccccccccccccccHHHccccccccccccccccccccHHHccccccccccccccccccccccccccccccccHHccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccEEEccccccccccccccccccccccccccccccccccEEEccccccccccccccccccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccHHHccHHHHHHcccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccEEEccccccccccccccccccEEEEEccccHHccccccHccccHHHHcccccccccEEEccccccccccEEccccHHHHHHHHHHHHHEcccccccccEEEEccccccEEEEccccccccccccEEEEEEEcccccccccccccccEEEEEEcccccEEEEEccccccccccccccccccccccccHHHHHHHHHHccccccccEEccccccHHHHHHHHHHHHcHHcccccccccccccccccccccccccccccccccccccccccccHHcccccccccccccEEEHHcccccccccccHccccccEEEEEccccccccEEEEccccccccccccEEEEEcccccccHHHHcccccHcHHcccccccccccEccccccccccccccEEccccccccEEEEEEEEccccccccccccccHcccccccHHHHHHHHHHHHHHcHcccccccccccccccccccccccccccHHcccEEEcccccccccccEEEEccHHccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEEcccccccccccccccccccHcccccccEEcccccccccccccccHHHHHHHHHcccccccccccccccccccccccccccccccccccHHHHHHHHcccccccccccccccHHHHHccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHccccccccccccccccccccccccccHHHHHHcccccccccccHHcHHHHHHHHHHHccccHHHHccccccccHHHccccccccccccc
Coil and Loop (DISEMBL)
mressyagslaysgrssrtdknvdcpesgeqkiEENSTSLERglgsymvgslpqlkqrkvgsrtnvvsaapslrdddvvqsnedrsalvkmDHLEKVvtegsklspvgiyslqpdpayeleyskpadaccescvvkeatigdiqseenssiagstgitisqsynqqhfsttdsfnkVNSFctersngedknvdssewrrksgkksilpgnnfscgaedswpqhkrrkVEGHLNDYLSASASMREEVVAQSGVNKSLVCEmdqnghhnmkvesqssdklqvdedksnskerdsthFSFVQELEVPLvssfnnqgtnskycsveegavsnstraildpdkqramggneALLHLSEkneqwnsehlsfdeigmqegkchlegngrasqcsvgspqrklvdligsdqimpefegfiletdnghsgtagedinfdkldlpktTIERASVLEQLCKsacmntplshffttyklhqapnlcqsvpNRLLECidlrnnpslndNIVKQLKASYscfdeeadhayqgrsysdcslfsstqpaseirkpfgspigkfwdritsnsassekrggsnpdlpciseenentDEVVNVFQEGISlevaspvgelwdwkksnssssdkqgslnpelpfiseedentdmvtGVHQGinlevmpssvkrepladitknpnltgsvpktDVFAARSSLESVKTEFSFSRTVRAKQKHVEHISNKKNRrqakmshgpssfgencinrvshnrftkpklsekpslrkggpsfadreskhnnivsniTSFIPLVQQKQAAAIITGKRDVKVKALEAAEAAKRLAVEKENERKMKKEALKLERAKLEQENLKQLELQKKKKEEEKKKKLADMAARKRQREEEERKEKERKRKRVMESRRQQQEHEEKLRAKKEEERKKKEADLLMVskdetwrdYKRVkdqgeenpakmkkteskatvvstsdarETSIVLqvsepstdcgdkskatghlekatendlvtnqnqepsydispykdsdneeeeddddrlntkfipswaskrasaliipsllsvspevifppgsfcsisevllprrqqqkmrp
Flexible Loop (DISEMBL)
mressyagslaysgrssrtdknvdcpesgeqkieenstslerGLGSYMVGSlpqlkqrkvgsrtnvvsaapslrdddvvqsNEDRsalvkmdhlekvvtegsklspvgiYSLQPDPAYELEYSKPADACCESCVVKEATIgdiqseenssiAGSTGITISQSYNQQHFSTTDSFNKVNSFCTersngedknvdssewrrksgkksilpgnnfscGAEDSWPQHKRRKVEGHLNDYLSASASMREEVVAQSGVNKSLVCEMDQNGHhnmkvesqssdklqvDEDKsnskerdsthfsfVQELEVPLVSSFNNQGTNSKYCSVEEGAVSNSTRAILDPDKQRAMGGNEALLHLSEKNEQWNSEHLSFDEIGMQEGKCHLEGNgrasqcsvgspQRKLVDLIGSDQIMPEFEGFILETDNGHSGTAGEDINFDKLDLPKTTIERASVLEQLCKSACMNTPLSHFFTTYKLHQAPNLCQSVPNRLLECIDLRNNPSLNDNIVKQLKASYSCFDEEADHAYQGRSYSDCSLFSSTQPASEIRKPFGSPIGKFWDRITSnsassekrggsnpdlpcISEENENTDEVVNVFQEGISLEVASPVGELWDWKKSnssssdkqgslnPELPFISEEDENTDMVTGVHQGINLEVMPSSVKREPLAditknpnltgsvpkTDVFAARSslesvktefsfsrtvrakqkhvehisnkknrrqakmshgpssfgencinRVSHNrftkpklsekpslrkggpsfadresKHNNIVSNITSFIPLVQQKQAAAIITGKRDVKVKALEAAEAAKrlavekenerKMKKEALKLerakleqenlkqlelqkkkkeeekkkkladmaarkrqreeeerkekerkrkrvmesrrqqqeheeklrakkeeerkkkeadllmvskdetwrdykrvkdqgeenpakmkkteskatvvstsdaretsivlqvsepstdcgdKSKATGHlekatendlvtnqnqepsydispykdsdneeeeddddrLNTKFIPSWASKRASALIIPSLLSVSPEVIfppgsfcsisevllprrqqqkmrp
Low Complexity Region (SEG)
MRESSYAGSLAYSGRSSRTDKNVDCPESGEQKIEENSTSLERGLGSYMVGSLPQLKQRKVGSRTNVVSAAPSLRDDDVVQSNEDRSALVKMDHLEKVVTEGSKLSPVGIYSLQPDPAYELEYSKPADACCESCVVKEATIGDIQSEENssiagstgitisqsYNQQHFSTTDSFNKVNSFCTERSNGEDKNVDSSEWRRKSGKKSILPGNNFSCGAEDSWPQHKRRKVEGHLNDYLSASASMREEVVAQSGVNKSLVCEMDQNGHHNMKVESQSSDKLQVDEDKSNSKERDSTHFSFVQELEVPLVSSFNNQGTNSKYCSVEEGAVSNSTRAILDPDKQRAMGGNEALLHLSEKNEQWNSEHLSFDEIGMQEGKCHLEGNGRASQCSVGSPQRKLVDLIGSDQIMPEFEGFILETDNGHSGTAGEDINFDKLDLPKTTIERASVLEQLCKSACMNTPLSHFFTTYKLHQAPNLCQSVPNRLLECIDLRNNPSLNDNIVKQLKASYSCFDEEADHAYQGRSYSDCSLFSSTQPASEIRKPFGSPIGKFWDRITSNSASSEKRGGSNPDLPCISeenentdevvnvFQEGISLEVASPVGELWDWkksnssssdkqgsLNPELPFISEEDENTDMVTGVHQGINLEVMPSSVKREPLADITKNPNLTGSVPKTDVFAARSSLESVKTEFSFSRTVRAKQKHVEHISNKKNRRQAKMSHGPSSFGENCINRVSHNRFTKPKLSEKPSLRKGGPSFADRESKHNNIVSNITSFIPLVQQKQAAAIITGKRDvkvkaleaaeaakrlavekeNerkmkkealklerakleqenlkqlelqkkkkeeekkkklADMAArkrqreeeerkekerkrkrvmesrrQQQEHeeklrakkeeerkkkeaDLLMVSKDETWRDYKRVKDQGEENPAKMKKTESKATVVSTSDARETSIVLQVSEPSTDCGDKSKATGHLEKATENDLVTNQNQEPSYDISPYKdsdneeeeddddRLNTKFIPSWASKRASALIIPSLLSVSPEVIFPPGSFCSISEVLLPRRQQQKMRP
Disordered region (IsUnstruct)
************************************************************************************************VVT***KLSPVGIYSLQPDPAYELEYSKPADACCESCVVKEATIGDI*********************************************************************************************************************************************************FVQELEVPLV***************************************************************************************KLVDLIGSDQIMPEFEGFILETDNGHSGTAGEDINFDKLDLPKTTIERASVLEQLCKSACMNTPLSHFFTTYKLHQAPNLCQSVPNRLLECIDLRNNPSLNDNIVKQLKASYSCFDEEADHAYQGRSYSDC*******************IGKFWD*******************************VVNVFQEGISLEVASPVGELWDW**************************************************************************************************************************************************************IVSNITSFIPLVQQKQAAAIITGKRDVKVKAL************************************************************************************************************************************************************************************************************************FIPSWASKRASALIIPSLLSVSPEVIFPPGSFCSISEVLL**********
Disordered Region (DISOPRED)
******************************************GLGSYMVGSLPQLK****G***NVVSAAPSLRDDDVVQSNEDRSALVKMDHLEKVVTEGSKLSPVGIYSLQPDPAYELEYSKPADACCESCVVKEATIG******************************DSFNKV**********************************************************************************************************************************************************************************************************************************************************************ERASVLEQLCKSACMNTPLSHFF**Y*LHQ***LC*SVPNRLL**ID********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************II**LLSVSPEVIFPPGSFCSISEVL***********
Disordered Region (DISEMBL)
**************************************SLERGLGSYMVGSLPQLK**********VSAAPSLRDDDVVQSNEDRSALVKMDHLEKVVTEGSKLSPVGIYSLQPDPAYELEYSKPADACCESCVVKEATIGDIQSEENSSIAGSTGITISQSYNQQHFSTTDSFNKVNSFCTE*******************KKSILPGNNFSCGAEDSWPQHKRRKVEGHLNDYLSASASMREEVVAQSGVNKSLVCEMDQNGHHNMKV**********************THFSFVQELEVPLVSSFNNQGTNSKYCSVEEGAVSNSTRAILDPDKQRAMGGNEALLHLSEKNEQWNSEHLSFDEIGMQEGKCHLEGN***********QRKLVDLIGSDQIMPEFEGFILETDNGHSGTAGEDINFDKLDLPKTTIERASVLEQLCKSACMNTPLSHFFTTYKLHQAPNLCQSVPNRLLECIDLRNNPSLNDNIVKQLKASYSCFDEEADHAYQGRSYSDCSLFSSTQPASEIRKPFGSPIGKFWDRITS************PDLPCISEENENTDEVVNVFQEGISLEVASPVGELWDWK*************NPELPFISEEDENTDMVTGVHQGINLEVMPSSVKREPLADITKNPNLTGSVPKTDVFAARSS****************************************SFGENCINRVSHNRFTKPKLSEKPSLRKGGPSFADRESKHNNIVSNITSFIPLVQQKQAAAIITGKRDVKVKALEAAEAAKRLAVEKENERKMKKEALKLERAKLEQENLKQLELQKKK***********************************************************EADLLMVSKDETWRDYKRVK**************************ETSIVLQVSEPSTDCGDKSKATGHLEKATENDLVTNQNQEPSYDISP**************RLNTKFIPSWASKRASALIIPSLLSVSPEVIFPPGSFCSISEVLLP*********
Disordered Region (DISPRO)
****************S***KNVDCPESGEQKIEENSTSLERGLGSYMVGSLPQLKQR***************RDDDVVQSNEDRSALVKMDHLEKVVTEGSKLSPVGIYSLQPDPAYELEYSKPADACCESCVVKEATIGDIQ**EN*SIAGSTGITISQSYNQQHFSTTDSFNKVNSFCTERSNGEDKNVDSSEWRRKSGKKSILPGNNFSCGAEDSWPQHKRRKVEGHLND*********************************************************************************SKYCSVEEGAVSNSTRAILDPDKQRAMGGNEALLHLSEKNEQWNSEHLSFDEIGMQEGKCHLEGNGRASQCSVGSPQRKLVDLIGSDQIMPEFEGFILETDNGHSGTAGEDINFDKLDLPKTTIERASVLEQLCKSACMNTPLSHFFTTYKLHQAPNLCQSVPNRLLECIDLRNNPSLNDNIVKQLKASYSCFDEEADHAYQGRSYSDCSLFSSTQPASEIRKPFGSPIGKFWD***************NPDLPCISEENENTDEVVNVFQEGISLEVASPVGELWDWKKSN***********PELPFISEEDENTDMVTGVHQGINLEVMPSSVKREPLADITKNPNLTGSVPKTDVFAARSSLESVKTEFSFSRT***********************************************************************************************************************************************************************************************************************************************************************************************************************DRLNTKFIPSWASKRASALIIPSLLSVSPEVIFPPGSFCSISEVLLPR********
Transmembrane Helix (TMHMM)
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Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRESSYAGSLAYSGRSSRTDKNVDCPESGEQKIEENSTSLERGLGSYMVGSLPQLKQRKVGSRTNVVSAAPSLRDDDVVQSNEDRSALVKMDHLEKVVTEGSKLSPVGIYSLQPDPAYELEYSKPADACCESCVVKEATIGDIQSEENSSIAGSTGITISQSYNQQHFSTTDSFNKVNSFCTERSNGEDKNVDSSEWRRKSGKKSILPGNNFSCGAEDSWPQHKRRKVEGHLNDYLSASASMREEVVAQSGVNKSLVCEMDQNGHHNMKVESQSSDKLQVDEDKSNSKERDSTHFSFVQELEVPLVSSFNNQGTNSKYCSVEEGAVSNSTRAILDPDKQRAMGGNEALLHLSEKNEQWNSEHLSFDEIGMQEGKCHLEGNGRASQCSVGSPQRKLVDLIGSDQIMPEFEGFILETDNGHSGTAGEDINFDKLDLPKTTIERASVLEQLCKSACMNTPLSHFFTTYKLHQAPNLCQSVPNRLLECIDLRNNPSLNDNIVKQLKASYSCFDEEADHAYQGRSYSDCSLFSSTQPASEIRKPFGSPIGKFWDRITSNSASSEKRGGSNPDLPCISEENENTDEVVNVFQEGISLEVASPVGELWDWKKSNSSSSDKQGSLNPELPFISEEDENTDMVTGVHQGINLEVMPSSVKREPLADITKNPNLTGSVPKTDVFAARSSLESVKTEFSFSRTVRAKQKHVEHISNKKNRRQAKMSHGPSSFGENCINRVSHNRFTKPKLSEKPSLRKGGPSFADRESKHNNIVSNITSFIPLVQQKQAAAIITGKRDVxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLLMVSKDETWRDYKRVKDQGEENPAKMKKTESKATVVSTSDARETSIVLQVSEPSTDCGDKSKATGHLEKATENDLVTNQNQEPSYDISPYKDSDNEEEEDDDDRLNTKFIPSWASKRASALIIPSLLSVSPEVIFPPGSFCSISEVLLPRRQQQKMRP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	1059	2.2.26 [Sep-21-2011]
P33332	1336	Exocyst complex component	yes	no	0.082	0.065	0.392	3e-05

>sp|P33332|SEC3_YEAST Exocyst complex component SEC3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SEC3 PE=1 SV=1

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 40/102 (39%), Positives = 66/102 (64%), Gaps = 15/102 (14%)

Query: 800 KRLAVEKENERKMKKEALKLERAKLEQENLKQLELQKKKK-EEEKKKKLADMAA------ 852
           KRL ++KENE K  +E    ER   ++E  +Q+EL+ +++ EEE++K+  ++ A      
Sbjct: 349 KRLQLQKENEMKRLEE----ERRIKQEERKRQMELEHQRQLEEEERKRQMELEAKKQMEL 404

Query: 853 -RKRQREEEERKEKERKRKRVMESRRQQQEHEEKLRAKKEEE 893
            R+RQ EEE+R +KER+   ++E +R+Q+E E   R KKEE+
Sbjct: 405 KRQRQFEEEQRLKKERE---LLEIQRKQREQETAERLKKEEQ 443

Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane.
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	1059
225461935	1763	PREDICTED: uncharacterized protein LOC10	0.767	0.461	0.457	1e-155
296089927	1793	unnamed protein product [Vitis vinifera]	0.767	0.453	0.443	1e-150
224056467	1580	predicted protein [Populus trichocarpa]	0.755	0.506	0.420	1e-146
147799284	2665	hypothetical protein VITISV_007763 [Viti	0.674	0.267	0.460	1e-129
255563472	1347	hypothetical protein RCOM_0521730 [Ricin	0.601	0.472	0.436	1e-102
334562419	1765	hypothetical protein At5g55820 [Arabidop	0.586	0.351	0.406	5e-95
15241047	1826	uncharacterized protein [Arabidopsis tha	0.576	0.334	0.404	2e-91
297793051	1781	hypothetical protein ARALYDRAFT_357817 [	0.566	0.336	0.402	2e-86
356574165	1660	PREDICTED: uncharacterized protein LOC10	0.679	0.433	0.352	6e-77
449462409	1590	PREDICTED: uncharacterized protein LOC10	0.564	0.376	0.397	7e-69

>gi|225461935|ref|XP_002265993.1| PREDICTED: uncharacterized protein LOC100241254 [Vitis vinifera]

 Score =  555 bits (1431), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 425/928 (45%), Positives = 548/928 (59%), Gaps = 115/928 (12%)

Query: 187  GEDKNV-DSSEWRRKSGKKSILPGNNFSCGAEDSWPQHKRRKVEGHLNDYLSASASMR-- 243
            G DK V DS     +  +KSI  G +F+   E   PQ KRRK+EG L D  SAS + +  
Sbjct: 892  GNDKIVGDSKPIELQITEKSIQSGRSFNFTME-GLPQAKRRKIEGQLLDASSASPNSKRE 950

Query: 244  ---------------------------------EEVVAQSGVNKSLVCEMDQNGHHNMKV 270
                                             EE V QS  +KS   EMDQN    M+ 
Sbjct: 951  PFQSIQDTMSTHLNGVEGNSETVLISPYLHISCEEGVDQSNASKSPHEEMDQNMKCCMEE 1010

Query: 271  ESQSSDKLQVDEDKSNSKERDST---HFSFVQE-LEVPLVSSFNNQGTNS-KYCSVEEGA 325
              +SS KLQV E + + + RD      F+F  E L  PLVSS   + +   +   VEE  
Sbjct: 1011 GIKSSSKLQVMEAEHSLEGRDKNVKPSFTFESEQLGPPLVSSLTKRASGDFQGFLVEEAE 1070

Query: 326  VSNSTRAILDPDKQRAMGGNEALLHLSEKNEQWNSEHLS-FDEIGMQEGKCHLEGNGRAS 384
                T  I D   Q A   ++  L L +K     +E+L+  DE  M +    LE  G  S
Sbjct: 1071 GEGGTNIIHDMRSQCATEEHQGSLFLDDKLGPEIAENLTCMDERTMWKTNFQLEDGGLFS 1130

Query: 385  QCSVGSPQRKLVDLIGSDQIMPEFEGFILETDNGHSGTAGEDINFDKLDLPKTTIERASV 444
             CS+GSP  + +DL G+DQ  P FEGF+++ +N     A + I FDKLDLP TTIERASV
Sbjct: 1131 HCSIGSPHNQYLDLFGADQAKPVFEGFVMQEENEKPHIARDGIGFDKLDLPTTTIERASV 1190

Query: 445  LEQLCKSACMNTPLSHFFTTYKLHQAPNLCQSVPNRLLECIDLRNNPSLNDNIVKQLKAS 504
            LEQLC SA ++TPL HF  T KL +APN CQSVPN LLE +DL++  SLND+  K L+AS
Sbjct: 1191 LEQLCLSASIHTPLPHFSITDKLPRAPNFCQSVPNGLLEGMDLQSTLSLNDDAGKLLRAS 1250

Query: 505  YSCFDEEADHAYQGRSYSDCSLFSSTQPASEIRKPFGSPIGKFWDRITSNSASSEKRGGS 564
            YSC +EEA+HA+QG S SD   FSSTQ A  I K                          
Sbjct: 1251 YSCLNEEANHAFQGSSTSDHRPFSSTQFAWNISK-------------------------- 1284

Query: 565  NPDLPCISEENENTDEVVNVFQEGISLEVASPVGELWDWKKSNSSSSDKQGSLNPEL--- 621
                PCIS                       PVG+LW    S+S SS K+ SLNPEL   
Sbjct: 1285 ----PCIS-----------------------PVGKLWRVSTSSSGSSGKRLSLNPELTCY 1317

Query: 622  -----PFISEEDENTDMVT-GVHQGINLEVMPSSVKREPLADITKNP-NLTGSVPKTDVF 674
                 P ISEE E  D V+   H+GI+   +  S +RE L DIT+   N   SV   + F
Sbjct: 1318 PIEEDPCISEETEQKDDVSDAFHEGISSMTITGSARRELLGDITEEYLNPLASVSTAEKF 1377

Query: 675  AARSSLESVKTEFSFSRTVRAKQKHVEHISNKKNRRQAKMSHGPS-SFGENCINRVS--- 730
            + R SL+SV  + +  RT    ++ ++++   K R   +M    S S  EN + RV+   
Sbjct: 1378 SDRGSLDSVNIDINVPRTQNKGKEKLQNLYESKTRGTNEMRENQSLSVAENGVRRVTESL 1437

Query: 731  HNRFTKPKLSEKPSLRKGGPSFADRESKHNNIVSNITSFIPLVQQKQAAAIITGKRDVKV 790
            HNRF+KPKLS K SLRKGGPS ++RESKH NIVSNITSF+PLVQ+ Q AA++TGKRDVKV
Sbjct: 1438 HNRFSKPKLSGKTSLRKGGPSISERESKHKNIVSNITSFVPLVQRAQGAAVVTGKRDVKV 1497

Query: 791  KALEAAEAAKRLAVEKENERKMKKEALKLERAKLEQENLKQLELQKKKKEEEKKKKLADM 850
            KALE AEAAKRL  ++ENERKMKKEALKLERA+LEQENL+QLEL+KKKKEEE++KK A+M
Sbjct: 1498 KALEVAEAAKRLEEKRENERKMKKEALKLERARLEQENLRQLELKKKKKEEERRKKEAEM 1557

Query: 851  AARKRQREEEERKEKERKRKRVMESRRQQQEHEEKLRAKKEEERKKKEADLLMVSKDETW 910
            AA +++  EEE KEKE KRKR  E+RRQQ+EHE+KLRA+KE+E++ + A +  V + +  
Sbjct: 1558 AA-RKRLREEEEKEKEAKRKRTEEARRQQREHEQKLRAEKEKEKRHR-ATVEKVHERKEA 1615

Query: 911  RDYKRVKDQGEENPAKMK-KTESKATVVSTSDARETSIVLQVSEPSTDCGDKSKATGHLE 969
            RD  ++  + EE+    K +TE + + VSTSD  + SIVL+ SE  +DCG+  K TG+L+
Sbjct: 1616 RDEVKIDKKVEEDTLVQKPETELRTSRVSTSDISKASIVLKDSEALSDCGEIQKVTGNLD 1675

Query: 970  KATEND-LVTNQNQEPSYDISPYKDSDNEEEEDDDDRLNTKFIPSWASKRASALIIPSLL 1028
            KA+END LV N  +E SY++SPY+ SD+EEEE+DD     KFIPSWASK    + + S  
Sbjct: 1676 KASENDNLVANTTKEESYEMSPYQSSDDEEEEEDDIP-TKKFIPSWASKNYLVIAVSSQQ 1734

Query: 1029 SVSPEVIFPPGSFCSISEVLLPRRQQQK 1056
             V P +IFPP SFCSI+EVL+ R+QQQ+
Sbjct: 1735 KVDPNMIFPPESFCSINEVLVSRKQQQQ 1762

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296089927|emb|CBI39746.3| unnamed protein product [Vitis vinifera]

 Score =  540 bits (1390), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 425/958 (44%), Positives = 548/958 (57%), Gaps = 145/958 (15%)

Query: 187  GEDKNV-DSSEWRRKSGKKSILPGNNFSCGAEDSWPQHKRRKVEGHLNDYLSASASMR-- 243
            G DK V DS     +  +KSI  G +F+   E   PQ KRRK+EG L D  SAS + +  
Sbjct: 892  GNDKIVGDSKPIELQITEKSIQSGRSFNFTME-GLPQAKRRKIEGQLLDASSASPNSKRE 950

Query: 244  ---------------------------------EEVVAQSGVNKSLVCEMDQNGHHNMKV 270
                                             EE V QS  +KS   EMDQN    M+ 
Sbjct: 951  PFQSIQDTMSTHLNGVEGNSETVLISPYLHISCEEGVDQSNASKSPHEEMDQNMKCCMEE 1010

Query: 271  ESQSSDKLQVDED------------------------------KSNSKERDST---HFSF 297
              +SS KLQV E                               + + + RD      F+F
Sbjct: 1011 GIKSSSKLQVMEQGLAPLKQILFIVYFVFSVYVFMLCHCLWQAEHSLEGRDKNVKPSFTF 1070

Query: 298  VQE-LEVPLVSSFNNQGTNS-KYCSVEEGAVSNSTRAILDPDKQRAMGGNEALLHLSEKN 355
              E L  PLVSS   + +   +   VEE      T  I D   Q A   ++  L L +K 
Sbjct: 1071 ESEQLGPPLVSSLTKRASGDFQGFLVEEAEGEGGTNIIHDMRSQCATEEHQGSLFLDDKL 1130

Query: 356  EQWNSEHLS-FDEIGMQEGKCHLEGNGRASQCSVGSPQRKLVDLIGSDQIMPEFEGFILE 414
                +E+L+  DE  M +    LE  G  S CS+GSP  + +DL G+DQ  P FEGF+++
Sbjct: 1131 GPEIAENLTCMDERTMWKTNFQLEDGGLFSHCSIGSPHNQYLDLFGADQAKPVFEGFVMQ 1190

Query: 415  TDNGHSGTAGEDINFDKLDLPKTTIERASVLEQLCKSACMNTPLSHFFTTYKLHQAPNLC 474
             +N     A + I FDKLDLP TTIERASVLEQLC SA ++TPL HF  T KL +APN C
Sbjct: 1191 EENEKPHIARDGIGFDKLDLPTTTIERASVLEQLCLSASIHTPLPHFSITDKLPRAPNFC 1250

Query: 475  QSVPNRLLECIDLRNNPSLNDNIVKQLKASYSCFDEEADHAYQGRSYSDCSLFSSTQPAS 534
            QSVPN LLE +DL++  SLND+  K L+ASYSC +EEA+HA+QG S SD   FSSTQ A 
Sbjct: 1251 QSVPNGLLEGMDLQSTLSLNDDAGKLLRASYSCLNEEANHAFQGSSTSDHRPFSSTQFAW 1310

Query: 535  EIRKPFGSPIGKFWDRITSNSASSEKRGGSNPDLPCISEENENTDEVVNVFQEGISLEVA 594
             I K                              PCIS                      
Sbjct: 1311 NISK------------------------------PCIS---------------------- 1318

Query: 595  SPVGELWDWKKSNSSSSDKQGSLNPEL--------PFISEEDENTDMVT-GVHQGINLEV 645
             PVG+LW    S+S SS K+ SLNPEL        P ISEE E  D V+   H+GI+   
Sbjct: 1319 -PVGKLWRVSTSSSGSSGKRLSLNPELTCYPIEEDPCISEETEQKDDVSDAFHEGISSMT 1377

Query: 646  MPSSVKREPLADITKNP-NLTGSVPKTDVFAARSSLESVKTEFSFSRTVRAKQKHVEHIS 704
            +  S +RE L DIT+   N   SV   + F+ R SL+SV  + +  RT    ++ ++++ 
Sbjct: 1378 ITGSARRELLGDITEEYLNPLASVSTAEKFSDRGSLDSVNIDINVPRTQNKGKEKLQNLY 1437

Query: 705  NKKNRRQAKMSHGPS-SFGENCINRVS---HNRFTKPKLSEKPSLRKGGPSFADRESKHN 760
              K R   +M    S S  EN + RV+   HNRF+KPKLS K SLRKGGPS ++RESKH 
Sbjct: 1438 ESKTRGTNEMRENQSLSVAENGVRRVTESLHNRFSKPKLSGKTSLRKGGPSISERESKHK 1497

Query: 761  NIVSNITSFIPLVQQKQAAAIITGKRDVKVKALEAAEAAKRLAVEKENERKMKKEALKLE 820
            NIVSNITSF+PLVQ+ Q AA++TGKRDVKVKALE AEAAKRL  ++ENERKMKKEALKLE
Sbjct: 1498 NIVSNITSFVPLVQRAQGAAVVTGKRDVKVKALEVAEAAKRLEEKRENERKMKKEALKLE 1557

Query: 821  RAKLEQENLKQLELQKKKKEEEKKKKLADMAARKRQREEEERKEKERKRKRVMESRRQQQ 880
            RA+LEQENL+QLEL+KKKKEEE++KK A+MAA +++  EEE KEKE KRKR  E+RRQQ+
Sbjct: 1558 RARLEQENLRQLELKKKKKEEERRKKEAEMAA-RKRLREEEEKEKEAKRKRTEEARRQQR 1616

Query: 881  EHEEKLRAKKEEERKKKEADLLMVSKDETWRDYKRVKDQGEENPAKMK-KTESKATVVST 939
            EHE+KLRA+KE+E++ + A +  V + +  RD  ++  + EE+    K +TE + + VST
Sbjct: 1617 EHEQKLRAEKEKEKRHR-ATVEKVHERKEARDEVKIDKKVEEDTLVQKPETELRTSRVST 1675

Query: 940  SDARETSIVLQVSEPSTDCGDKSKATGHLEKATEND-LVTNQNQEPSYDISPYKDSDNEE 998
            SD  + SIVL+ SE  +DCG+  K TG+L+KA+END LV N  +E SY++SPY+ SD+EE
Sbjct: 1676 SDISKASIVLKDSEALSDCGEIQKVTGNLDKASENDNLVANTTKEESYEMSPYQSSDDEE 1735

Query: 999  EEDDDDRLNTKFIPSWASKRASALIIPSLLSVSPEVIFPPGSFCSISEVLLPRRQQQK 1056
            EE+DD     KFIPSWASK    + + S   V P +IFPP SFCSI+EVL+ R+QQQ+
Sbjct: 1736 EEEDDIP-TKKFIPSWASKNYLVIAVSSQQKVDPNMIFPPESFCSINEVLVSRKQQQQ 1792

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224056467|ref|XP_002298871.1| predicted protein [Populus trichocarpa] gi|222846129|gb|EEE83676.1| predicted protein [Populus trichocarpa]

 Score =  524 bits (1350), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 392/933 (42%), Positives = 520/933 (55%), Gaps = 133/933 (14%)

Query: 174  FNKVNSFCTERSNGEDKNVDSSEWRRKSGKKSILPGNNFSCGAEDSWPQHKRRKVEGHL- 232
             N+   F  E +N   K ++S+          I    N  C    SWPQHKRRK+ G L 
Sbjct: 730  VNETALFVDENTNSVHKKINSA----------ISENQNGDCYVMGSWPQHKRRKIAGQLT 779

Query: 233  NDYLSASASMRE--EVVAQSGVN--------------------------------KSLVC 258
            + + ++S  MR+  + +    VN                                KS V 
Sbjct: 780  SSFYASSCLMRKPFQPIVTDHVNGNINTMEDSDTVQISKGFYMSHMGDDMQPNAIKSSVE 839

Query: 259  EMDQNGHHNMKVESQSSDKLQVDEDKSNSKERDSTHFSFVQELEVPLVSSFNNQGTN-SK 317
            ++ QN   +M     SS KLQV++ +   + R  +      +      S      T  S+
Sbjct: 840  DIHQNSGLHMAWPEFSSPKLQVEKVEPGLEGRSGS----ANKCGARSPSGLTKLSTGVSQ 895

Query: 318  YCSVEEGAVSNSTRAILDPDKQRAMGGNEALLHLSEKNEQWNSEHLSFDEIGMQEGKCHL 377
              S+E+  V N T  I+D  +Q     N+  L L ++ E  +SE L+  E  MQE + H+
Sbjct: 896  ASSLEKVPVENPTIVIIDETRQHTAEKNQVSLQLEDRFELGSSELLTCTETAMQENRFHV 955

Query: 378  EGNGRASQCSVGSPQRKLVDLIGSDQIMPEFEGFILETDNGHSGTAGEDINFDKLDLPKT 437
              NG++   SV SP  + +DLIG+DQ MP +E F +ET         E I+F+KLDL   
Sbjct: 956  GRNGKSLSNSVSSPHSQSMDLIGTDQSMPVYEWFGMET---------EGIDFEKLDLSDN 1006

Query: 438  TIERASVLEQLCKSACMNTPLSHFFTTYKLHQAPNLCQSVPNRLLECIDLRNNPSLNDNI 497
             +E A  +E+LCKS C+ TPLSHF T Y  H+  NL QSVPN +LE ++L    + N N 
Sbjct: 1007 ALESAIAVERLCKSVCLETPLSHFATAYNKHKTLNLYQSVPNGVLEAMELSTTVNTNSNT 1066

Query: 498  VKQLKASYSCFDEEADHAYQGRSYSDCSLFSSTQPASEIRKPFGSPIGKFWDRITSNSAS 557
             K+L+AS  CF+++ +    GR +SD   FS+     EIRKP  SP+G+ W+ ITS S S
Sbjct: 1067 GKELEASLKCFNDKVNDTLHGRLHSDSPAFSNAPSTWEIRKPLMSPVGRLWEGITSRSGS 1126

Query: 558  SEKRGGSNPDLPCISEENENTDEVVNVFQEGISLEVASPVGELWDWKKSNSSSSDKQGSL 617
            SEKR  S PDLPCISEENEN  EV   F++                              
Sbjct: 1127 SEKRVSSIPDLPCISEENENIIEVPETFKD------------------------------ 1156

Query: 618  NPELPFISEEDENTDMVTGVHQGINLEVMPSSVKREPLADITKNPNLTGSVPKTDVFAAR 677
                            V G  Q      M SSVKR  LADIT NP+   SV  +++ + R
Sbjct: 1157 ----------------VVGSEQ------MISSVKRGLLADITNNPDPPISVYDSEIVSDR 1194

Query: 678  SSLESVKTEFSFSRTVRAKQKHVEHISNKKNRRQ--AKMSHGPSSFGENCINRVS---HN 732
             SL S  TE S++ T R  +  +   + K NRR+   K     +  G N + R S   HN
Sbjct: 1195 YSLASENTECSYTGTCR--RDKLNQGNQKGNRRKYNIKAKENQNLVGVNGVKRASESHHN 1252

Query: 733  RFTKPKLSEKPSLRKGGPSFADRESKHNNIVSNITSFIPLVQQKQAAAIITGKRDVKVKA 792
            R +KP LS K SLRKGG S A+ +S  NNIVSNITSFIPLVQQKQAAA++TGKRDVKVKA
Sbjct: 1253 RLSKPILSGKTSLRKGGLSLAETKSNLNNIVSNITSFIPLVQQKQAAAVVTGKRDVKVKA 1312

Query: 793  LEAAEAAKRLAVEKENERKMKKEALKLERAKLEQENLKQLELQKKKKEEEKKKKLADMAA 852
            LEAAE AKRLA +KENERKM+KEALKLERAK+E++NL+Q EL+K+KK++E K+K ADMAA
Sbjct: 1313 LEAAEVAKRLAEKKENERKMRKEALKLERAKMEEQNLRQWELEKEKKDQEHKRKEADMAA 1372

Query: 853  RKRQREEEERKEKERKRKRVMESRRQQQEHEEKLRAKKEE-ERKKKEADLLMV----SKD 907
            +KRQREEEE+KE+ERKRKRV E+RRQQ  HEEKLRA+KEE E+K + AD        SKD
Sbjct: 1373 KKRQREEEEKKERERKRKRVEEARRQQLVHEEKLRAEKEEREKKHRAADERAFENKKSKD 1432

Query: 908  ETWRDYKRVKDQGEENPAKMKKTESKATVVSTSDARETSIVLQVSEPSTDCGDKSKATGH 967
            ++ +  K  K++G+ N  K+ +++   ++VST D  ++ +         DCGD SK    
Sbjct: 1433 KSGKHVKMEKEKGDNNLQKVPESKPVTSMVSTIDDGKSEL--------GDCGDNSKEMTV 1484

Query: 968  LEKATEN-DLVTNQNQEPSYDISPYKDS-DNEEEEDDDDRLNTKFIPSWASKRASALIIP 1025
              K  EN +L++N +QE +Y+ISPYK S D +E+E+DD+  N KFIPSWASK   AL   
Sbjct: 1485 FSKPAENGNLMSNISQEQAYEISPYKGSDDEDEDEEDDETENNKFIPSWASKNHLALTAS 1544

Query: 1026 SLLSVSPEVIFPPGSFCSISEVLLPRRQQQKMR 1058
            S  S+ P  IF   SF   SEVLLPR+ QQK R
Sbjct: 1545 SQQSIDPRTIFTLDSFPDKSEVLLPRKLQQKQR 1577

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147799284|emb|CAN76998.1| hypothetical protein VITISV_007763 [Vitis vinifera]

 Score =  469 bits (1207), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 372/807 (46%), Positives = 483/807 (59%), Gaps = 93/807 (11%)

Query: 232  LNDYLSASASMREEVVAQSGVNKSLVCEMDQNGHHNMKVESQSSDKLQVDEDKSNSKERD 291
            ++ YL  S    EE V QS  +KS   EMDQN    M+   +SS KLQV E + + + RD
Sbjct: 900  ISPYLHISC---EEGVDQSNASKSPHEEMDQNMKCCMEEGIKSSSKLQVMEAEHSLEGRD 956

Query: 292  ST---HFSFVQE-LEVPLVSSFNNQGT-NSKYCSVEEGAVSNSTRAILDPDKQRAMGGNE 346
                  F+F  E L  PLVSS   + + + +   VEE      T  I D   Q A   ++
Sbjct: 957  KNVKPSFTFESEQLGPPLVSSLTKRASGDFQGFLVEEAEGEGGTNIIHDMRSQCATEEHQ 1016

Query: 347  ALLHLSEKNEQWNSEHLS-FDEIGMQEGKCHLEGNGRASQCSVGSPQRKLVDLIGSDQIM 405
              L L +K     +E+L+  DE  M +    LE  G  S CS+GS   + +DL G+DQ  
Sbjct: 1017 GSLFLDDKLGPEIAENLTCMDERTMWKTNFQLEDGGLFSHCSIGSLHNQYLDLFGADQAK 1076

Query: 406  PEFEGFILETDNGHSGTAGEDINFDKLDLPKTTIERASVLEQLCKSACMNTPLSHFFTTY 465
            P FEGF+++ +N     A + I FD+LDLP TTIERASVLEQLC SA ++TPL HF  T 
Sbjct: 1077 PVFEGFVMQEENEKPHIARDGIGFDQLDLPTTTIERASVLEQLCLSASIHTPLPHFSITD 1136

Query: 466  KLHQAPNLCQSVPNRLLECIDLRNNPSLNDNIVKQLKASYSCFDEEADHAYQGRSYSDCS 525
            KL +APN CQS            +  SLND+  K L+ASYSC +EEA+HA+QG S SD  
Sbjct: 1137 KLPRAPNFCQS------------STLSLNDDAGKLLRASYSCLNEEANHAFQGSSTSDHR 1184

Query: 526  LFSSTQPASEIRKPFGSPIGKFWDRITSNSASSEKRGGSNPDLPCISEENENTDEVVNVF 585
             FSSTQ A  I K                              PCIS             
Sbjct: 1185 PFSSTQFAWNISK------------------------------PCIS------------- 1201

Query: 586  QEGISLEVASPVGELWDWKKSNSSSSDKQGSLNPEL--------PFISEEDENTDMVT-G 636
                      PVG+LW    S+S SS K+ SLNPEL        P ISEE E  D V+  
Sbjct: 1202 ----------PVGKLWRVSTSSSGSSGKRLSLNPELTCYPIEEDPCISEETEQKDDVSDA 1251

Query: 637  VHQGINLEVMPSSVKREPLADITKNP-NLTGSVPKTDVFAARSSLESVKTEFSFSRTVRA 695
             H+GI+   +  S +RE L DIT+   N   SV   + F+ R SL+SV  + +  RT   
Sbjct: 1252 FHEGISSMTITGSARRELLGDITEEYLNPLASVSTAEKFSDRGSLDSVNIDINVPRTQNK 1311

Query: 696  KQKHVEHISNKKNRRQAKMSHGPS-SFGENCINRVS---HNRFTKPKLSEKPSLRKGGPS 751
             ++ ++++   K R   +M    S S  EN + RV+   HNRF+KPKLS K SLRKGGPS
Sbjct: 1312 GKEKLQNLYESKTRGTNEMRENQSLSVAENGVRRVTESLHNRFSKPKLSGKTSLRKGGPS 1371

Query: 752  FADRESKHNNIVSNITSFIPLVQQKQAAAIITGKRDVKVKALEAAEAAKRLAVEKENERK 811
             ++RESKH NIVSNITSF+PLVQ+ Q AA++TGKRDVKVKALE AEAAKRL  ++ENERK
Sbjct: 1372 ISERESKHKNIVSNITSFVPLVQRAQGAAVVTGKRDVKVKALEVAEAAKRLEEKRENERK 1431

Query: 812  MKKEALKLERAKLEQENLKQLELQKKKKEEEKKKKLADMAARKRQREEEERKEKERKRKR 871
            MKKEALKLERA+LEQENL+QLEL+KKKKEEE++KK A+MAA +++  EEE KEKE KRKR
Sbjct: 1432 MKKEALKLERARLEQENLRQLELKKKKKEEERRKKEAEMAA-RKRLREEEEKEKEAKRKR 1490

Query: 872  VMESRRQQQEHEEKLRAKKEEERKKKEADLLMVSKDETWRDYKRVKDQGEENPAKMK-KT 930
              E+RRQQ+EHE+KLRA+KE+E++ + A +  V + +  RD  ++  + EE+    K +T
Sbjct: 1491 TEEARRQQREHEQKLRAEKEKEKRHR-ATVEKVHERKEARDEVKIDKKVEEDTLVQKPET 1549

Query: 931  ESKATVVSTSDARETSIVLQVSEPSTDCGDKSKATGHLEKATEND-LVTNQNQEPSYDIS 989
            E + + VSTSD  + SIVL+ SE  +DCG+  K T +L+KA+END LV N  +E SY++S
Sbjct: 1550 ELRTSRVSTSDISKASIVLKDSEALSDCGEIQKVTSNLDKASENDNLVANTTKEESYEMS 1609

Query: 990  PYKDSDNEEEEDDDDRLNTKFIPSWAS 1016
            PY+ SD+EEEE+DD     KFIPSWAS
Sbjct: 1610 PYQSSDDEEEEEDDIP-TKKFIPSWAS 1635

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255563472|ref|XP_002522738.1| hypothetical protein RCOM_0521730 [Ricinus communis] gi|223537976|gb|EEF39589.1| hypothetical protein RCOM_0521730 [Ricinus communis]

 Score =  381 bits (979), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 326/747 (43%), Positives = 412/747 (55%), Gaps = 110/747 (14%)

Query: 219  SWPQHKRRKVEGHLNDYLSASASMREEVVAQ-------------SGVNKSLVCEMDQNGH 265
            SWPQHKR K+ G     LSAS S++  ++               S V KS V ++ QN  
Sbjct: 657  SWPQHKRIKIGGQATGALSASPSLK--IIPYQPMQTYYKGDPLLSVVVKSTVEDIHQNVE 714

Query: 266  HNMKVESQ-SSDKLQVDEDKS-------------NSKER----DSTHFSFVQELEVPLVS 307
            H    ES+ SS KLQVDE  S             N +E      +T FS + E     VS
Sbjct: 715  HEKIEESEVSSFKLQVDEYCSMLNVCLTIIRQVENRREGMAGGSTTDFSLILEQGASSVS 774

Query: 308  SFNNQGTN-SKYCSVEEGAVSNST----------RAILDPDKQRAMGGNEALLHLSEKNE 356
            +        S+ C  ++  V++             A  D D    +  N  L  L +  +
Sbjct: 775  NSKRLAAGVSQGCLSDKAEVADPVGIGFDMIEQDNAEEDQDTGDTIEENHVLFQLEDDLK 834

Query: 357  QWNSEHLSFDEIGMQEGKCHLEGNGRASQCSVGSPQRKLVDLIGSDQIMPEFEGFILETD 416
              ++E L+  E  M E   H EG G  S  S GSP R+ V  I  DQ +PEFEGF++  D
Sbjct: 835  LGDAEVLNHTEEDMHENAYHFEGKGTLSFWSSGSPLRQFV--IHDDQNIPEFEGFVMGAD 892

Query: 417  NGHSGTAGEDINFDKLDLPKTTIERASVLEQLCKSACMNTPLSHFFTTYKLHQAPNLCQS 476
            +    TA E  +FD LDLP   + RASVLE+LCKS C++TPLSHF  TY LH+A N  QS
Sbjct: 893  DEPKCTANEGNSFDNLDLPPAELGRASVLERLCKSTCLHTPLSHFSATYNLHEALNFYQS 952

Query: 477  VPNRLLECIDLRNNPSLNDNIVKQLKASYSCFDEEADHAYQGRSYSDCSLFSSTQPASEI 536
            +PN LLE ++LR+  ++N +  KQL A+ +  DEE +H   GRS+S     S+   A +I
Sbjct: 953  IPNGLLEGMELRSTLNMNGDGCKQLGANDNFLDEEINHDLHGRSHSISLPLSNAHSAWDI 1012

Query: 537  RKPFGSPIGKFWDRITSNSASSEKRGGSNPDLPCISEENENTDEVVNVFQEGISLEVASP 596
             KP  SP+GKFWD I   S SS KR  S P+LPCISEENE TD V +   EG        
Sbjct: 1013 TKPCMSPVGKFWDGIPLKSGSSGKRVSSIPELPCISEENEATDGVPDRLLEGAG------ 1066

Query: 597  VGELWDWKKSNSSSSDKQGSLNPELPFISEEDENTDMVTGVHQGINLEVMPSSVKREPLA 656
                                  PEL                          SSVKREPLA
Sbjct: 1067 ----------------------PELSI------------------------SSVKREPLA 1080

Query: 657  DITKNPNLTGSVPKTDVFAARSSLESVKTEFSFSRTV-RAKQKHVEHISNK-----KNRR 710
            DITK+ N   SV + ++   R SL S+ TE SFS T  RAK K     SNK     K++ 
Sbjct: 1081 DITKHANPITSVCEAEICEGRGSLGSMNTEISFSGTCDRAKTKLGNKKSNKRRFTSKDKE 1140

Query: 711  QAKMSHGPSSFGENCINRVSHNRFTKPKLSEKPSLRKGGPSFADRESKHNNIVSNITSFI 770
               +S G    G    N   H+RF++PKLS K  LRKGG S  ++ESK  NIVSNI SF+
Sbjct: 1141 NHNISLGVD--GNKRGNGSLHSRFSRPKLSGKADLRKGGLSLLEKESKPTNIVSNIASFV 1198

Query: 771  PLVQQKQAAAIITGKRDVKVKALEAAEAAKRLAVEKENERKMKKEALKLERAKLEQENLK 830
             LVQQKQAAA+ITGKRD+KVKALEAAEAAKR A +KENERKM+KEA+K ER K+E++NL+
Sbjct: 1199 TLVQQKQAAAVITGKRDIKVKALEAAEAAKRNAQKKENERKMRKEAMKRERVKMEEQNLR 1258

Query: 831  QLELQKKKKEEEKKKKLADMAARKRQREEEERKEKERKRKRVMESRRQQQEHEEKLRAKK 890
            QLEL+KKKKEEEK+KK ADMAA+KR REEEERKEKERKR RV ES+R    HE++L A+K
Sbjct: 1259 QLELEKKKKEEEKRKKEADMAAKKRHREEEERKEKERKRMRVEESKRHHLAHEKRLHAEK 1318

Query: 891  EEERKKKEAD----LLMVSKDETWRDY 913
            EE+  K +A     +L+      W ++
Sbjct: 1319 EEKELKFKAPVWFLMLLCDMKFLWLEF 1345

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|334562419|gb|AEG79732.1| hypothetical protein At5g55820 [Arabidopsis thaliana]

 Score =  356 bits (913), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 284/698 (40%), Positives = 398/698 (57%), Gaps = 77/698 (11%)

Query: 390  SPQRKLVDLIGSDQIMPE-FEGFILETDNGHSGTAGEDINFDKLDLPKTTIERASVLEQL 448
            SP    + LI SD   P   EGFI++TD+ +   +   +N D   LP+TT E A+++EQ+
Sbjct: 1114 SPCLTPLGLISSDDGSPPVLEGFIIQTDDENQSGSKNQLNHDSFQLPRTTAESAAMIEQI 1173

Query: 449  CKSACMNTPLSHFFTTYKLHQAPNLCQSVPNRLLECIDLRNNPSLNDNIVKQLKASYSCF 508
            CKSACMNTP  H   T+K  +  +L QSV   L + +    N          L+ S S F
Sbjct: 1174 CKSACMNTPSLHLAKTFKFDEKLDLDQSVSTELFDGMFFSQN----------LEGS-SVF 1222

Query: 509  DEEA-DHAYQGRSYSDCSLFSSTQPASEIRKPFGSPIGKFWDRITSNSASSEKRGGSNPD 567
            D    +H Y GRSY+D      T  ++E R P  SP  K W R    S+SSEKR    PD
Sbjct: 1223 DNLGINHDYTGRSYTDS--LPGTGSSAEARNPCMSPTEKLWYRSLQKSSSSEKRSTQTPD 1280

Query: 568  LPCISEENENTDEVVNVFQEGISLEVASPVGELWDWKKSNSSSSDKQGSLNPELPFISEE 627
            LPCISEENEN +E         +L   +P           S  S+K+GS  PELP I+EE
Sbjct: 1281 LPCISEENENIEEEAE------NLCTNTP----------KSMRSEKRGSSIPELPCIAEE 1324

Query: 628  DENTDMVT-GVHQGINLEVMPSSVKREPLADITKNP-NLTGSVPKTDVFAARSSLESVKT 685
            +EN D ++  V++    E    S +R+PL D+ ++P  L  SV +  + A R SL+SV T
Sbjct: 1325 NENIDEISDAVNEASGSERENVSAERKPLGDVNEDPMKLLPSVSEAKIPADRQSLDSVST 1384

Query: 686  EFSFSRTVRAKQKHVEHISNKKNRRQAKMSHGPSSFGENCINRVSHNRFTKPKLSEKPSL 745
             FSFS    + +  V  +SN++   + K + G +    N   +   +RF+KPKLS   SL
Sbjct: 1385 AFSFSAKCNSVKSKVGKLSNRRFTGKGKENQGGAGAKRNV--KPPSSRFSKPKLSCNSSL 1442

Query: 746  RKGGPSFADRESKHNNIVSNITSFIPLVQQ-KQAAAIITGKRDVKVKALEAAEAAKRLAV 804
               GP   ++E +HNNIVSNITSF+PLVQQ K A A+ITGKRDVKVKALEAAEA+KR+A 
Sbjct: 1443 TTVGPRLQEKEPRHNNIVSNITSFVPLVQQQKPAPALITGKRDVKVKALEAAEASKRIAE 1502

Query: 805  EKENERKMKKEALKLERAKLEQENLK----------------------QLELQKKKKEEE 842
            +KEN+RK+KKEA+KLERAK EQENLK                      + E++KKKKEEE
Sbjct: 1503 QKENDRKLKKEAMKLERAKQEQENLKKQEIEKKKKEEDRKKKEAEMAWKQEMEKKKKEEE 1562

Query: 843  KKKKLADMAARKRQREEEERKEKE-RKRKRVMESRRQQQEHEEKLRAKKEEERKKKEADL 901
            +K+K  +MA RKRQREEE+++ KE +KR+R+ + +RQQ+E +EKL+A+KE +R+  +A +
Sbjct: 1563 RKRKEFEMADRKRQREEEDKRLKEAKKRQRIADFQRQQREADEKLQAEKELKRQAMDARI 1622

Query: 902  LMVSK-DETWRDYKRVKDQGEENPAKMKKTESKATVVSTSDARETSIVLQVSEPSTDCGD 960
                +  E   + ++ +      PA   K+ S     ++  +RE    + +S P      
Sbjct: 1623 KAQKELKEDQNNAEKTRQANSRIPAVRSKSNSSDDTNASRSSRENDFKV-ISNP------ 1675

Query: 961  KSKATGHLEKATENDLVTNQNQEPSYDISPYKDSDNEEEEDDDDRL--NTKFIPSWASKR 1018
                 G++ +     +   +  E SY+ISPYK SD+E+EE+DD+    N KF P+WASK 
Sbjct: 1676 -----GNMSEEANMGI---EEMEESYNISPYKCSDDEDEEEDDNDDMSNKKFAPTWASKS 1727

Query: 1019 ASALIIPSLLSVSPEVIFPPGSFCSISEVLLPRRQQQK 1056
               L + S  ++ P+V FP  S C IS VLLPR+ Q +
Sbjct: 1728 NVRLAVISQQNIDPDVTFPAKSACDISNVLLPRKFQSR 1765

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15241047|ref|NP_200393.1| uncharacterized protein [Arabidopsis thaliana] gi|9758616|dbj|BAB09249.1| unnamed protein product [Arabidopsis thaliana] gi|332009301|gb|AED96684.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  343 bits (881), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 278/687 (40%), Positives = 390/687 (56%), Gaps = 77/687 (11%)

Query: 390  SPQRKLVDLIGSDQIMPE-FEGFILETDNGHSGTAGEDINFDKLDLPKTTIERASVLEQL 448
            SP    + LI SD   P   EGFI++TD+ +   +   +N D   LP+TT E A+++EQ+
Sbjct: 1145 SPCLTPLGLISSDDGSPPVLEGFIIQTDDENQSGSKNQLNHDSFQLPRTTAESAAMIEQI 1204

Query: 449  CKSACMNTPLSHFFTTYKLHQAPNLCQSVPNRLLECIDLRNNPSLNDNIVKQLKASYSCF 508
            CKSACMNTP  H   T+K  +  +L QSV   L + +    N          L+ S S F
Sbjct: 1205 CKSACMNTPSLHLAKTFKFDEKLDLDQSVSTELFDGMFFSQN----------LEGS-SVF 1253

Query: 509  DEEA-DHAYQGRSYSDCSLFSSTQPASEIRKPFGSPIGKFWDRITSNSASSEKRGGSNPD 567
            D    +H Y GRSY+D      T  ++E R P  SP  K W R    S+SSEKR    PD
Sbjct: 1254 DNLGINHDYTGRSYTDS--LPGTGSSAEARNPCMSPTEKLWYRSLQKSSSSEKRSTQTPD 1311

Query: 568  LPCISEENENTDEVVNVFQEGISLEVASPVGELWDWKKSNSSSSDKQGSLNPELPFISEE 627
            LPCISEENEN +E         +L   +P           S  S+K+GS  PELP I+EE
Sbjct: 1312 LPCISEENENIEEEAE------NLCTNTP----------KSMRSEKRGSSIPELPCIAEE 1355

Query: 628  DENTDMVT-GVHQGINLEVMPSSVKREPLADITKNP-NLTGSVPKTDVFAARSSLESVKT 685
            +EN D ++  V++    E    S +R+PL D+ ++P  L  SV +  + A R SL+SV T
Sbjct: 1356 NENIDEISDAVNEASGSERENVSAERKPLGDVNEDPMKLLPSVSEAKIPADRQSLDSVST 1415

Query: 686  EFSFSRTVRAKQKHVEHISNKKNRRQAKMSHGPSSFGENCINRVSHNRFTKPKLSEKPSL 745
             FSFS    + +  V  +SN++   + K + G +    N   +   +RF+KPKLS   SL
Sbjct: 1416 AFSFSAKCNSVKSKVGKLSNRRFTGKGKENQGGAGAKRNV--KPPSSRFSKPKLSCNSSL 1473

Query: 746  RKGGPSFADRESKHNNIVSNITSFIPLVQQ-KQAAAIITGKRDVKVKALEAAEAAKRLAV 804
               GP   ++E +HNNIVSNITSF+PLVQQ K A A+ITGKRDVKVKALEAAEA+KR+A 
Sbjct: 1474 TTVGPRLQEKEPRHNNIVSNITSFVPLVQQQKPAPALITGKRDVKVKALEAAEASKRIAE 1533

Query: 805  EKENERKMKKEALKLERAKLEQENLK----------------------QLELQKKKKEEE 842
            +KEN+RK+KKEA+KLERAK EQENLK                      + E++KKKKEEE
Sbjct: 1534 QKENDRKLKKEAMKLERAKQEQENLKKQEIEKKKKEEDRKKKEAEMAWKQEMEKKKKEEE 1593

Query: 843  KKKKLADMAARKRQREEEERKEKE-RKRKRVMESRRQQQEHEEKLRAKKEEERKKKEADL 901
            +K+K  +MA RKRQREEE+++ KE +KR+R+ + +RQQ+E +EKL+A+KE +R+  +A +
Sbjct: 1594 RKRKEFEMADRKRQREEEDKRLKEAKKRQRIADFQRQQREADEKLQAEKELKRQAMDARI 1653

Query: 902  LMVSK-DETWRDYKRVKDQGEENPAKMKKTESKATVVSTSDARETSIVLQVSEPSTDCGD 960
                +  E   + ++ +      PA   K+ S     ++  +RE    + +S P      
Sbjct: 1654 KAQKELKEDQNNAEKTRQANSRIPAVRSKSNSSDDTNASRSSRENDFKV-ISNP------ 1706

Query: 961  KSKATGHLEKATENDLVTNQNQEPSYDISPYKDSDNEEEEDDDDRL--NTKFIPSWASKR 1018
                 G++ +     +   +  E SY+ISPYK SD+E+EE+DD+    N KF P+WASK 
Sbjct: 1707 -----GNMSEEANMGI---EEMEESYNISPYKCSDDEDEEEDDNDDMSNKKFAPTWASKS 1758

Query: 1019 ASALIIPSLLSVSPEVIFPPGSFCSIS 1045
               L + S  ++ P+V FP  S C IS
Sbjct: 1759 NVRLAVISQQNIDPDVTFPAKSACDIS 1785

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297793051|ref|XP_002864410.1| hypothetical protein ARALYDRAFT_357817 [Arabidopsis lyrata subsp. lyrata] gi|297310245|gb|EFH40669.1| hypothetical protein ARALYDRAFT_357817 [Arabidopsis lyrata subsp. lyrata]

 Score =  327 bits (838), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 275/683 (40%), Positives = 392/683 (57%), Gaps = 83/683 (12%)

Query: 390  SPQRKLVDLIGSDQIMPE-FEGFILETDNGHSGTAGEDINFDKLDLPKTTIERASVLEQL 448
            SP    + LI SD   P   EGFI++TD+ +   +   +N D   LP+TT E A+++EQ+
Sbjct: 1138 SPCFSPLGLISSDDGSPPVLEGFIIQTDDENQSGSKNQLNHDSFQLPRTTAESAAMIEQI 1197

Query: 449  CKSACMNTPLSHFFTTYKLHQAPNLCQSVPNRLLECIDLRNNPSLNDNIVKQLKASYSCF 508
            CKSACMNTP      T+KL    +L QS+ N L + +    N          L+ S S F
Sbjct: 1198 CKSACMNTPSLQLAKTFKLDGKLDLDQSISNELFDGMFFSQN----------LEGS-SVF 1246

Query: 509  DEEA-DHAYQGRSYSDCSLFSSTQPASEIRKPFGSPIGKFWDRITSNSASSEKRGGSNPD 567
            D    +H Y GRSY+D         ++E R P  SP  K W R    S+SSEKR    PD
Sbjct: 1247 DNLGINHDYTGRSYTDSLPLFGAGSSAETRNPCTSPTEKLWYRSLQKSSSSEKRSSQTPD 1306

Query: 568  LPCISEENENTDEVVNVFQEGISLEVASPVGELWDWKKSNSSSSDKQGSLNPELPFISEE 627
            LPCISEENEN +E         +L + +P           S   +K+GS  P+LP I+EE
Sbjct: 1307 LPCISEENENVEEEAE------NLCMNTP----------KSRRLEKRGSSIPDLPCIAEE 1350

Query: 628  DENTDMVT-GVHQGINLEVMPSSVKREPLADITKNP-NLTGSVPKTDVFAARSSLESVKT 685
            +EN D ++  V++G   E    S +R+P  D  ++P     SV +  +   R SL+SV T
Sbjct: 1351 NENIDEISEAVNEGSGFERENVSAERKPHGDDNEDPMKFLPSVSEAKISVDRQSLDSVNT 1410

Query: 686  EFSFSRTVRAKQKHVEHISNKKNRRQAKMSHGPSSFGENCINRVSHNRFTKPKLSEKPSL 745
             FSFS    + +  V  +SN++   + K + G +    N   +   +RF+KPKLS   SL
Sbjct: 1411 AFSFSAKCNSVKSKVGKLSNRRFTGKGKENQGGAGARRNV--KPPSSRFSKPKLSCNSSL 1468

Query: 746  RKGGPSFADRESKHNNIVSNITSFIPLVQQ-KQAAAIITGKRDVKVKALEAAEAAKRLAV 804
               GP   ++E +HNNIVSNITSF+PLVQQ K A A+ITGKRDVKVKALEAAEA+KR+A 
Sbjct: 1469 TTVGPRLPEKEPRHNNIVSNITSFVPLVQQQKPAPALITGKRDVKVKALEAAEASKRIAE 1528

Query: 805  EKENERKMKKEALKLERAKLEQENLK----------------------QLELQKKKKEEE 842
            +KEN+RKMKKEA+KLERA+ EQENL+                      + E++KKKKEEE
Sbjct: 1529 QKENDRKMKKEAMKLERARQEQENLRKQEIEKKKKEEDRKKKEAEMAWKQEMEKKKKEEE 1588

Query: 843  KKKKLADMAARKRQREEEERKEKERKRKRVMESRRQQQEHEEKLRAKKEEERKKKEADL- 901
            +K+K  +MA RKRQREEE++K KE KR+R+ E +RQQ+E +EKL+A+KE +R+  EA   
Sbjct: 1589 RKRKEFEMADRKRQREEEDKKLKEAKRQRIAEIQRQQREADEKLQAEKELKRQAMEARTK 1648

Query: 902  --LMVSKDETWRDYKRVKDQGEENPAKMKKTESKATVVSTSDARETSIVLQVSEPSTDCG 959
               ++  D++  + ++++ Q     A+ K   S  T  S S +R+T   + +S P    G
Sbjct: 1649 AQKVLKADQS--NAEKIRGQ-----ARSKSYSSDDTNASRS-SRDTDFKV-ISNP----G 1695

Query: 960  DKSKATGHLEKATENDLVTNQNQEPSYDISPYKDSDNEEEEDDDDRLNTKFIPSWASKRA 1019
            + S+         E+++   + +E SY+ISPYK S ++E+E++DD  N KF+P+WASK  
Sbjct: 1696 NMSE---------EHNMGIEEMEE-SYNISPYKCS-DDEDEEEDDMSNKKFVPTWASKSN 1744

Query: 1020 SALIIPSLLSVSPEVIFPPGSFC 1042
              L + S  ++ P +IFP  + C
Sbjct: 1745 VRLAVISQQNLDPNIIFPAKNVC 1767

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356574165|ref|XP_003555222.1| PREDICTED: uncharacterized protein LOC100816990 [Glycine max]

 Score =  295 bits (756), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 313/887 (35%), Positives = 452/887 (50%), Gaps = 167/887 (18%)

Query: 212  FSCGAEDSWPQHKRRKVEGHLNDYLSASASMRE---EVVAQSGVNKSLVCEMD------- 261
            F+   E S PQHKRRK+E     + +AS+++ E   + + Q   +++L  E D       
Sbjct: 895  FTYDVEHSCPQHKRRKIEIETERFRAASSNLLEKPCDSIDQRPASRNLSIEEDSREIALE 954

Query: 262  -QNGHHNMK--VESQSSDKLQVDEDKSNSKERDSTHFSFVQELEVPLVSSFNNQGTNSKY 318
             QN   + +  +  QS   +  DE + N + +     S     E        ++  ++  
Sbjct: 955  VQNLPSDPEDDIGHQSISNIPTDEMQYNGECQTMEDSSLKVRKEEKCTLDGRDRSEDTLL 1014

Query: 319  CSVEEGAVSNSTRAILDPDKQRAMGGNEALLHLSEKNEQWN---------SEHLSFDEIG 369
                  AV+N +   +D      MG       + EK E W+         +EHLS  E  
Sbjct: 1015 L-----AVANPSGFSID----STMG-----CTMDEKVESWHHQVSCGQECAEHLSCVEKS 1060

Query: 370  MQEGKCHLEGNGRASQCSVGSPQRKLVDLIGSDQIMPEFEGFILETDNGHSGTAGEDINF 429
                + +  GN + S     SP  + +DL+G+D+ +PE EGFI++ DN      G+ ++ 
Sbjct: 1061 TSSRRVYPGGNAKFSDGMSASPGMQCLDLVGTDETIPELEGFIMQADNAQPCITGDQMDL 1120

Query: 430  DKLDLPKTTIERASV------LEQLCKSACMNTPLSHFFTTYKLHQAPNLCQSVPNRLLE 483
            +++DL K  +E   +         L KS  M++ L +  T YK+H  P   QS+PN LL+
Sbjct: 1121 EEMDLEKMDLEEIDLPSNSIDYTSLGKSRFMHSSLCNTLTPYKIHNVPEPYQSLPNGLLK 1180

Query: 484  CIDLRNNPSLNDNIVKQLKASYSCFDEEADHAYQGRSYSDCSLFSSTQPASEIRKPFGSP 543
             + +R +  L+D                       RS SDC      QP    +  + S 
Sbjct: 1181 GLGIRTSLPLSDG--------------------SPRSLSDC------QP--NCKGQYTSS 1212

Query: 544  IGKFWDRITSNSASSEKRGGSNPDLPCISEENENTDEVVNVFQEGISLE------VASPV 597
            +   WDRI SN  SS KR     DLPCI+EENEN DE+   FQ GI  E      +  P+
Sbjct: 1213 VQTLWDRINSNLGSSGKRRSLKLDLPCITEENENVDEIPGTFQRGIGSEGMAGSNIREPL 1272

Query: 598  GELWDWKKSNSSSSDKQGSLNPELPFISEEDENTDMVTGVHQGINLEVMPSSVKREPLAD 657
             E+ D   +N S+S  Q                 D++TG  + I                
Sbjct: 1273 AEIVD--NANPSTSVLQ----------------DDILTGGRKDI---------------- 1298

Query: 658  ITKNPNLTGSVPKTDVFAARSSLESVKTEFSFSRTV-RAKQKHVEHISNKKN-RRQAKMS 715
                                     + TEF+ S T  + K K  +   N+K   R+ K +
Sbjct: 1299 -------------------------LSTEFNLSGTCDKVKNKLDKQDGNRKRFTRKGKEN 1333

Query: 716  HGPSSFGENCINRVSHNRFTKPKLSEKPSLRKGGPSFADRESKHNNIVSNITSFIPLVQQ 775
            H   S G N + R + +   +PKLS K S+++G           NNIVSN++SFIPLVQQ
Sbjct: 1334 HN-ISLGANGVKRTAGSVCKRPKLSGKDSMKQG---------PINNIVSNVSSFIPLVQQ 1383

Query: 776  KQAAAIITGKRDVKVKALEAAEAAKRLAVEKENERKMKKEALKLERAKLEQENLKQLELQ 835
            KQAAA++TGKRDVKVKALEAAEAAKR+A +KENERKMKKE L+LER +LE E       Q
Sbjct: 1384 KQAAAVVTGKRDVKVKALEAAEAAKRMAEKKENERKMKKEVLRLERERLELEL------Q 1437

Query: 836  KKKKEEEKKKKLADMAARKRQREEEERKEKERKRKRVMESRRQQQEHEEKLRAKKEEERK 895
            KKKKEEE+KKK   MAA+KRQ E+EE+KEKE+KRKRV + ++QQQ+H  K++AKKEE + 
Sbjct: 1438 KKKKEEERKKKEEQMAAKKRQMEDEEKKEKEKKRKRVNDKKKQQQDH-MKIQAKKEEIKI 1496

Query: 896  KKEA------DLLMVSKDETWRDYKRVKDQGEENPAKMKKTESKATVVSTSDARETSIVL 949
            ++ A      +  ++ + E  ++   V+D+ E N  K+ +TE    V   +D +E+    
Sbjct: 1497 QRRATDEVQENKKIIDERENHKNLS-VQDKRECNMEKISETEPLTMVDLANDKKESHP-- 1553

Query: 950  QVSEPSTDCGDKSKATGHLEKATEND--LVTNQNQEPSYDISPYKDSDNEEEEDDDDRLN 1007
              SE   DC +  +   +L KATE+D  ++ +  QE SYDISPY+ S ++E+ED+DD  N
Sbjct: 1554 DYSESVNDCANNGQVMDNLIKATEDDDLIIKDSLQEQSYDISPYRGS-DDEDEDEDDLPN 1612

Query: 1008 TKFIPSWASKRASALIIPSLLSVSPEVIFPPGSFCSISEVLLPRRQQ 1054
             K IPSWASK + +LI+ S   + PE IFPP SFC+I+EVLLPR+ Q
Sbjct: 1613 NKLIPSWASKHSLSLIVSS-QKMDPETIFPPQSFCNIAEVLLPRKLQ 1658

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449462409|ref|XP_004148933.1| PREDICTED: uncharacterized protein LOC101214907 [Cucumis sativus]

 Score =  269 bits (687), Expect = 7e-69,   Method: Compositional matrix adjust.
 Identities = 275/692 (39%), Positives = 397/692 (57%), Gaps = 94/692 (13%)

Query: 378  EGNGRASQCSVGSPQRKLVDLIGSDQIMPEFEGFILETDNGHSGTAGEDINFDKLDLPKT 437
            E  G+ + CS+ +P  +    +G+D+ MP  EGF++++D      +   IN D L+L K 
Sbjct: 972  EDKGKLTSCSLLTPLIQTSHYLGADKDMPALEGFLMQSDAEQPCISVGGINLDTLELSKC 1031

Query: 438  TIERASVLEQLCKSACMNTPLSHFFTTYKLHQAPNLCQSVPNRLLECIDLRNNPSLNDNI 497
             IERAS+LE++CKSAC+N+PLS    + KL++  +L  S+ N LLE +DL++N  +ND  
Sbjct: 1032 MIERASILEKICKSACINSPLSSSSESLKLNKVADLYHSLSNGLLESVDLKSNLLMNDQ- 1090

Query: 498  VKQLKASYSCFDEEADHAYQGRSYSDCSLFSSTQPASEIRKPFGSPIGKFWDRITSNSAS 557
             K LK   +  + E + +  G S+S C                          I S+SAS
Sbjct: 1091 NKLLKDGSNFLNGEVNCSPHG-SFSAC-----------------------LKSIGSHSAS 1126

Query: 558  SEKRGGSNPDLPCISEENENTDEVVNVFQEGISLEVASPVGELWDWKKSNSSSSDKQGSL 617
              +R                                 SP  +L D    NSSSS K+ S 
Sbjct: 1127 DVRR------------------------------PFVSPFSKLLDRNSLNSSSSGKRSSP 1156

Query: 618  NPELPFISEEDENTDMVTGVHQGINLEVMPSSVKREPLADITKNPNLTGSVPKTDVFAAR 677
            N ELP ISEE E+T+           + M S++ R PL D+T+N N+  +V +T +FA R
Sbjct: 1157 NIELPCISEEAESTEETDNKFA----KDMKSNM-RVPLVDVTENANVPVAVSETVMFADR 1211

Query: 678  SSLESVKTEFSFSRTVRAKQKHVEHISNKKNRRQAKMSHG------PSSFGENCINRVSH 731
             SLES+ TE   + T     +  E+++N+K  ++  ++        P + G   + R S+
Sbjct: 1212 LSLESLNTEVGNTGT---HNRTKENLANQKKSKRKYLNEAVDLDIFPGANGAKRVTRSSY 1268

Query: 732  NRFTKPKLSEKPSLRKGGPSFADRESKHNNIVSNITSFIPLVQQKQAAAIITGKRDVKVK 791
            +RF++  LS K + RK G  F+ +E+KH NIVSNITSFIPLVQQ++AA I+ GKRDVKVK
Sbjct: 1269 SRFSRSDLSCKENFRKEGSRFSGKETKHKNIVSNITSFIPLVQQREAATILKGKRDVKVK 1328

Query: 792  ALEAAEAAKRLAVEKENERKMKKEALKLERAKLEQENLKQLELQKKKKEEEKKKKLADMA 851
            A+EAAEAAKRLA +KENER+MKKEALKLERA++EQENL+QLEL+KKKKEE++KKK  +M 
Sbjct: 1329 AIEAAEAAKRLAEKKENERQMKKEALKLERARMEQENLRQLELEKKKKEEDRKKKEEEMK 1388

Query: 852  ARKRQREEEERKEKERKRK-------RVMESRRQQQEHEEKLRAKKEEERKKKEADLLMV 904
             RK  +  ++R+ +E +RK        V E RR+ +EH  KLR+ KE +  K +A+    
Sbjct: 1389 KRKADKAAKKRQREEEERKEKERKRMHVEEVRRRLREHGGKLRSDKENKDVKPQANEQKP 1448

Query: 905  SKDETWRDY--KRVKDQGEENPAKMKKTESKATVVSTSDARETSIVLQVSEPSTDCGDKS 962
               +  +D   K  K+ G E   K+  T+SK+T   TSDAR  + V++ ++P+       
Sbjct: 1449 LDRKACKDVTNKLDKENGHEKFDKLSVTKSKST---TSDARRENFVVENAQPTI------ 1499

Query: 963  KATGHLE-KATENDL---VTNQNQEPSYDISPYKDSDNEEEEDDDDRL-NTKFIPSWASK 1017
               G LE +A EN +   ++  ++  SY ISPYK SD+E+EED+DD +   KF+PSWASK
Sbjct: 1500 --VGFLEAEALENGMESRISETSERESYQISPYKASDDEDEEDEDDGIRKNKFVPSWASK 1557

Query: 1018 RASALIIPSLLSVSPEVIFPPGSFCSISEVLL 1049
               A +  S   ++PE+IFPP SFC I +VLL
Sbjct: 1558 DHVADLFASQQKLNPEIIFPPKSFCDIEQVLL 1589

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	1059
TAIR|locus:2162202	1826	WYR "AT5G55820" [Arabidopsis t	0.157	0.091	0.436	2e-55

TAIR|locus:2162202 WYR "AT5G55820" [Arabidopsis thaliana (taxid:3702)]

 Score = 314 (115.6 bits), Expect = 2.0e-55, Sum P(4) = 2.0e-55
 Identities = 75/172 (43%), Positives = 105/172 (61%)

Query:   619 PELPFISEEDENTDMVT-GVHQGINLEVMPSSVKREPLADITKNP-NLTGSVPKTDVFAA 676
             PELP I+EE+EN D ++  V++    E    S +R+PL D+ ++P  L  SV +  + A 
Sbjct:  1347 PELPCIAEENENIDEISDAVNEASGSERENVSAERKPLGDVNEDPMKLLPSVSEAKIPAD 1406

Query:   677 RSSLESVKTEFSFSRTVRAKQKHVEHISNKKNRRQAKMSHGPSSFGENCINRVSHNRFTK 736
             R SL+SV T FSFS    + +  V  +SN++   + K + G +    N   +   +RF+K
Sbjct:  1407 RQSLDSVSTAFSFSAKCNSVKSKVGKLSNRRFTGKGKENQGGAGAKRNV--KPPSSRFSK 1464

Query:   737 PKLSEKPSLRKGGPSFADRESKHNNIVSNITSFIPLVQQ-KQAAAIITGKRD 787
             PKLS   SL   GP   ++E +HNNIVSNITSF+PLVQQ K A A+ITGKRD
Sbjct:  1465 PKLSCNSSLTTVGPRLQEKEPRHNNIVSNITSFVPLVQQQKPAPALITGKRD 1516

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0009553 "embryo sac development" evidence=IMP

GO:0048316 "seed development" evidence=IMP

GO:0000226 "microtubule cytoskeleton organization" evidence=RCA

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

GO:0006270 "DNA replication initiation" evidence=RCA

GO:0006275 "regulation of DNA replication" evidence=RCA

GO:0006306 "DNA methylation" evidence=RCA

GO:0006342 "chromatin silencing" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0009957 "epidermal cell fate specification" evidence=RCA

GO:0010389 "regulation of G2/M transition of mitotic cell cycle" evidence=RCA

GO:0016570 "histone modification" evidence=RCA

GO:0031047 "gene silencing by RNA" evidence=RCA

GO:0048449 "floral organ formation" evidence=RCA

GO:0048451 "petal formation" evidence=RCA

GO:0048453 "sepal formation" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

GO:0051726 "regulation of cell cycle" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	1059
pfam13868	349	pfam13868, Trichoplein, Tumour suppressor, Mitosta	1e-10
PRK12704	520	PRK12704, PRK12704, phosphodiesterase; Provisional	2e-10
TIGR02794	346	TIGR02794, tolA_full, TolA protein	1e-09
TIGR02794	346	TIGR02794, tolA_full, TolA protein	4e-09
TIGR02794	346	TIGR02794, tolA_full, TolA protein	5e-09
pfam13868	349	pfam13868, Trichoplein, Tumour suppressor, Mitosta	6e-09
pfam13868	349	pfam13868, Trichoplein, Tumour suppressor, Mitosta	1e-08
TIGR02794	346	TIGR02794, tolA_full, TolA protein	2e-08
pfam13868	349	pfam13868, Trichoplein, Tumour suppressor, Mitosta	4e-08
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	4e-08
TIGR02794	346	TIGR02794, tolA_full, TolA protein	6e-08
pfam13868	349	pfam13868, Trichoplein, Tumour suppressor, Mitosta	1e-07
TIGR02794	346	TIGR02794, tolA_full, TolA protein	1e-07
COG3064	387	COG3064, TolA, Membrane protein involved in colici	1e-07
PRK09510	387	PRK09510, tolA, cell envelope integrity inner memb	1e-07
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	2e-07
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	2e-07
pfam10147	217	pfam10147, CR6_interact, Growth arrest and DNA-dam	2e-07
pfam13868	349	pfam13868, Trichoplein, Tumour suppressor, Mitosta	3e-07
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	3e-07
PRK00409	782	PRK00409, PRK00409, recombination and DNA strand e	6e-07
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	7e-07
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	8e-07
TIGR02794	346	TIGR02794, tolA_full, TolA protein	9e-07
pfam13868	349	pfam13868, Trichoplein, Tumour suppressor, Mitosta	1e-06
COG3064	387	COG3064, TolA, Membrane protein involved in colici	1e-06
PRK09510	387	PRK09510, tolA, cell envelope integrity inner memb	1e-06
pfam13868	349	pfam13868, Trichoplein, Tumour suppressor, Mitosta	2e-06
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	2e-06
PRK09510	387	PRK09510, tolA, cell envelope integrity inner memb	3e-06
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	5e-06
TIGR03319	514	TIGR03319, RNase_Y, ribonuclease Y	5e-06
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	5e-06
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	6e-06
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	7e-06
pfam12037	276	pfam12037, DUF3523, Domain of unknown function (DU	1e-05
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	2e-05
PRK09510	387	PRK09510, tolA, cell envelope integrity inner memb	2e-05
pfam09756	189	pfam09756, DDRGK, DDRGK domain	2e-05
pfam12037	276	pfam12037, DUF3523, Domain of unknown function (DU	3e-05
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	4e-05
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	4e-05
pfam09756	189	pfam09756, DDRGK, DDRGK domain	4e-05
pfam00769	244	pfam00769, ERM, Ezrin/radixin/moesin family	4e-05
COG4942	420	COG4942, COG4942, Membrane-bound metallopeptidase	4e-05
pfam02841	297	pfam02841, GBP_C, Guanylate-binding protein, C-ter	4e-05
pfam12072	201	pfam12072, DUF3552, Domain of unknown function (DU	5e-05
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	6e-05
COG3064	387	COG3064, TolA, Membrane protein involved in colici	6e-05
pfam02463	1162	pfam02463, SMC_N, RecF/RecN/SMC N terminal domain	6e-05
pfam13868	349	pfam13868, Trichoplein, Tumour suppressor, Mitosta	7e-05
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	1e-04
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	1e-04
pfam02463	1162	pfam02463, SMC_N, RecF/RecN/SMC N terminal domain	1e-04
pfam02463	1162	pfam02463, SMC_N, RecF/RecN/SMC N terminal domain	1e-04
pfam05262	489	pfam05262, Borrelia_P83, Borrelia P83/100 protein	1e-04
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	1e-04
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	2e-04
TIGR03319	514	TIGR03319, RNase_Y, ribonuclease Y	2e-04
pfam05262	489	pfam05262, Borrelia_P83, Borrelia P83/100 protein	2e-04
pfam13904	261	pfam13904, DUF4207, Domain of unknown function (DU	2e-04
pfam11068	131	pfam11068, DUF2869, Protein of unknown function (D	2e-04
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	2e-04
pfam07946	322	pfam07946, DUF1682, Protein of unknown function (D	2e-04
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	3e-04
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	3e-04
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	3e-04
pfam10243	506	pfam10243, MIP-T3, Microtubule-binding protein MIP	3e-04
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	3e-04
pfam12128	1198	pfam12128, DUF3584, Protein of unknown function (D	3e-04
pfam05672	171	pfam05672, MAP7, MAP7 (E-MAP-115) family	3e-04
COG4487	438	COG4487, COG4487, Uncharacterized protein conserve	3e-04
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	4e-04
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	4e-04
pfam07946	322	pfam07946, DUF1682, Protein of unknown function (D	4e-04
PRK07735	430	PRK07735, PRK07735, NADH dehydrogenase subunit C;	4e-04
pfam02841	297	pfam02841, GBP_C, Guanylate-binding protein, C-ter	5e-04
COG2825	170	COG2825, HlpA, Outer membrane protein [Cell envelo	6e-04
smart00935	140	smart00935, OmpH, Outer membrane protein (OmpH-lik	6e-04
pfam02841	297	pfam02841, GBP_C, Guanylate-binding protein, C-ter	7e-04
PRK02224	880	PRK02224, PRK02224, chromosome segregation protein	7e-04
pfam00992	131	pfam00992, Troponin, Troponin	7e-04
PRK04195	482	PRK04195, PRK04195, replication factor C large sub	7e-04
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	8e-04
COG2268	548	COG2268, COG2268, Uncharacterized protein conserve	9e-04
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	0.001
PRK02224	880	PRK02224, PRK02224, chromosome segregation protein	0.001
PTZ00108	1388	PTZ00108, PTZ00108, DNA topoisomerase 2-like prote	0.001
pfam04615	728	pfam04615, Utp14, Utp14 protein	0.001
pfam04615	728	pfam04615, Utp14, Utp14 protein	0.001
PRK00247	429	PRK00247, PRK00247, putative inner membrane protei	0.001
pfam06098	288	pfam06098, Radial_spoke_3, Radial spoke protein 3	0.001
pfam09731	493	pfam09731, Mitofilin, Mitochondrial inner membrane	0.001
pfam04935	206	pfam04935, SURF6, Surfeit locus protein 6	0.001
COG3064	387	COG3064, TolA, Membrane protein involved in colici	0.002
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.002
COG4942	420	COG4942, COG4942, Membrane-bound metallopeptidase	0.002
pfam02463	1162	pfam02463, SMC_N, RecF/RecN/SMC N terminal domain	0.002
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	0.002
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	0.002
pfam09428	130	pfam09428, DUF2011, Fungal protein of unknown func	0.002
pfam09726	680	pfam09726, Macoilin, Transmembrane protein	0.002
pfam12474	142	pfam12474, PKK, Polo kinase kinase	0.002
pfam05279	240	pfam05279, Asp-B-Hydro_N, Aspartyl beta-hydroxylas	0.002
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.003
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.003
pfam04111	356	pfam04111, APG6, Autophagy protein Apg6	0.003
PRK12705	508	PRK12705, PRK12705, hypothetical protein; Provisio	0.003
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.004
pfam12072	201	pfam12072, DUF3552, Domain of unknown function (DU	0.004
pfam09726	680	pfam09726, Macoilin, Transmembrane protein	0.004
COG2433	652	COG2433, COG2433, Uncharacterized conserved protei	0.004
pfam08701	80	pfam08701, GN3L_Grn1, GNL3L/Grn1 putative GTPase	0.004

>gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin

 Score = 63.8 bits (156), Expect = 1e-10
 Identities = 35/139 (25%), Positives = 73/139 (52%), Gaps = 12/139 (8%)

Query: 794 EAAEAAKRLAVEKENERKMKKEALKLERAKLEQENLKQLELQKKKKEEEKKKKLAD---M 850
           E  E  +  A+ +E ER+ K+   K ER +      +Q+E ++K+++EE +++L +   M
Sbjct: 45  EMMEEERLKALAEEEERERKR---KEERREGRAVLQEQIEEREKRRQEEYEERLQEREQM 101

Query: 851 AARKRQREEEERKEKERKRKRVMESRRQQQEHEEKLRAKKEEERKKKEADLLMVSKDETW 910
                + +EE+  E + KR++  + R +  E  E+   +KEEE++++  + L +      
Sbjct: 102 DEIIERIQEEDEAEAQEKREKQKKLREEIDEFNEERIERKEEEKEREREEELKI------ 155

Query: 911 RDYKRVKDQGEENPAKMKK 929
            +Y+R K + EE     ++
Sbjct: 156 LEYQREKAEREEEREAERR 174

Trichoplein or mitostatin, was first defined as a meiosis-specific nuclear structural protein. It has since been linked with mitochondrial movement. It is associated with the mitochondrial outer membrane, and over-expression leads to reduction in mitochondrial motility whereas lack of it enhances mitochondrial movement. The activity appears to be mediated through binding the mitochondria to the actin intermediate filaments (IFs). Length = 349

>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional

 Score = 64.0 bits (157), Expect = 2e-10
 Identities = 36/120 (30%), Positives = 64/120 (53%), Gaps = 6/120 (5%)

Query: 785 KRDVKVKALEAAEAAKRLAVEKENERKMKKEALKLERAKLEQENLKQLELQKKKKEEEKK 844
           K+  + K  EA E AKR+  E + E +  K+   LE AK E   L+  E +K+ +E  ++
Sbjct: 26  KKIAEAKIKEAEEEAKRILEEAKKEAEAIKKEALLE-AKEEIHKLRN-EFEKELRE--RR 81

Query: 845 KKLADMAARKRQREEEERKEKE--RKRKRVMESRRQQQEHEEKLRAKKEEERKKKEADLL 902
            +L  +  R  Q+EE   ++ E   KR+  +E + ++ E +++   KKEEE ++   + L
Sbjct: 82  NELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQL 141

Length = 520

>gnl|CDD|234017 TIGR02794, tolA_full, TolA protein

 Score = 61.0 bits (148), Expect = 1e-09
 Identities = 38/140 (27%), Positives = 66/140 (47%), Gaps = 13/140 (9%)

Query: 774 QQKQAAAIITGKRDVKVKALE--AAEAAKRLAVEKENERKMKKEALKLERAKLEQ----- 826
           + +Q       K   + K LE  A EA K+ A E+  ++++++ A   + AK  +     
Sbjct: 54  RIQQQKKPAAKKEQERQKKLEQQAEEAEKQRAAEQARQKELEQRAAAEKAAKQAEQAAKQ 113

Query: 827 --ENLKQLELQKKKKEEEKKKKLADMAARKRQREEEERKEKERKRKRVMESRRQQQEH-- 882
             E  KQ E  K K+  E K K    A +K + E +++ E+E K K   E++++  E   
Sbjct: 114 AEEKQKQAEEAKAKQAAEAKAKAEAEAEKKAKEEAKKQAEEEAKAKAAAEAKKKAAEAKK 173

Query: 883 --EEKLRAKKEEERKKKEAD 900
             E + +AK E + K K  +
Sbjct: 174 KAEAEAKAKAEAKAKAKAEE 193

TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB [Transport and binding proteins, Other, Cellular processes, Pathogenesis]. Length = 346

>gnl|CDD|234017 TIGR02794, tolA_full, TolA protein

 Score = 59.1 bits (143), Expect = 4e-09
 Identities = 38/139 (27%), Positives = 58/139 (41%), Gaps = 13/139 (9%)

Query: 774 QQKQAAAIITGKRDVKVKALEAAEAAKRLAVEKENE-----RKMKKEALKLERAKLEQEN 828
             +QA      +R    KA + AE A + A EK+ +      K   EA     A+ E+  
Sbjct: 85  AAEQARQKELEQRAAAEKAAKQAEQAAKQAEEKQKQAEEAKAKQAAEAKAKAEAEAEK-- 142

Query: 829 LKQLELQKKKKEEEKKKKLADMAARK-----RQREEEERKEKERKRKRVMESRRQQQEHE 883
            K  E  KK+ EEE K K A  A +K     ++ E E + + E K K   E  + + E  
Sbjct: 143 -KAKEEAKKQAEEEAKAKAAAEAKKKAAEAKKKAEAEAKAKAEAKAKAKAEEAKAKAEAA 201

Query: 884 EKLRAKKEEERKKKEADLL 902
           +   A +   + + EA   
Sbjct: 202 KAKAAAEAAAKAEAEAAAA 220

TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB [Transport and binding proteins, Other, Cellular processes, Pathogenesis]. Length = 346

>gnl|CDD|234017 TIGR02794, tolA_full, TolA protein

 Score = 58.7 bits (142), Expect = 5e-09
 Identities = 35/141 (24%), Positives = 66/141 (46%), Gaps = 3/141 (2%)

Query: 795 AAEAAKRLAVEKENERKMKKEALKLERAKLEQENLKQLELQKKKKEEEKKKKLADMAARK 854
             + A +   E++ + + + E  + +RA  EQ   K+LE +   ++  K+ + A   A +
Sbjct: 58  QKKPAAKKEQERQKKLEQQAEEAEKQRAA-EQARQKELEQRAAAEKAAKQAEQAAKQAEE 116

Query: 855 RQREEEERKEKERK-RKRVMESRRQQQEHEEKLRAKKEEERKKKEADLLMVSKDETWRDY 913
           +Q++ EE K K+    K   E+  +++  +E+ + + EEE K K A        E  +  
Sbjct: 117 KQKQAEEAKAKQAAEAKAKAEAEAEKKA-KEEAKKQAEEEAKAKAAAEAKKKAAEAKKKA 175

Query: 914 KRVKDQGEENPAKMKKTESKA 934
           +       E  AK K  E+KA
Sbjct: 176 EAEAKAKAEAKAKAKAEEAKA 196

TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB [Transport and binding proteins, Other, Cellular processes, Pathogenesis]. Length = 346

>gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin

 Score = 58.8 bits (143), Expect = 6e-09
 Identities = 34/113 (30%), Positives = 67/113 (59%), Gaps = 7/113 (6%)

Query: 791 KALEAAEAAKRLAVEKENERKMKKEALKLERAKLEQENLKQLELQKKKKEEEKKKKLADM 850
              E  E  +R   ++E E++ +++  +L+RA+ EQ   K+  LQ+++ EEE +++   M
Sbjct: 208 LYQEEYERKERQKEKEEAEKRRRQK-QELQRAREEQIEEKEERLQEERAEEEAERE--RM 264

Query: 851 AARKRQREEEERKEKERKRKRVMESRR----QQQEHEEKLRAKKEEERKKKEA 899
             ++ + EE E++  E++R + +E RR    Q +E EE+  A++EEE ++ E 
Sbjct: 265 LEKQAEDEELEQENAEKRRMKRLEHRRELEQQIEEKEERRAAEREEELEEGER 317

Trichoplein or mitostatin, was first defined as a meiosis-specific nuclear structural protein. It has since been linked with mitochondrial movement. It is associated with the mitochondrial outer membrane, and over-expression leads to reduction in mitochondrial motility whereas lack of it enhances mitochondrial movement. The activity appears to be mediated through binding the mitochondria to the actin intermediate filaments (IFs). Length = 349

>gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin

 Score = 58.0 bits (141), Expect = 1e-08
 Identities = 28/125 (22%), Positives = 67/125 (53%), Gaps = 5/125 (4%)

Query: 774 QQKQAAAIITGKRDVKVKALEAAEAAKRLAVEKENERKMKKEALKLERAKLEQENLKQLE 833
           ++K+      G+  ++ +  E  +  +    E+  ER+   E ++  + + E E  ++ E
Sbjct: 62  ERKRKEERREGRAVLQEQIEEREKRRQEEYEERLQEREQMDEIIERIQEEDEAEAQEKRE 121

Query: 834 LQKKKKEEEKKKKLADMAARKRQREEEERKEKERKRKRVMESRRQQQEHEEKLRAKKEEE 893
            QKK +EE     + +    + +R+EEE++ +  +  +++E +R++ E EE+  A++ E 
Sbjct: 122 KQKKLREE-----IDEFNEERIERKEEEKEREREEELKILEYQREKAEREEEREAERRER 176

Query: 894 RKKKE 898
           +++KE
Sbjct: 177 KEEKE 181

Trichoplein or mitostatin, was first defined as a meiosis-specific nuclear structural protein. It has since been linked with mitochondrial movement. It is associated with the mitochondrial outer membrane, and over-expression leads to reduction in mitochondrial motility whereas lack of it enhances mitochondrial movement. The activity appears to be mediated through binding the mitochondria to the actin intermediate filaments (IFs). Length = 349

>gnl|CDD|234017 TIGR02794, tolA_full, TolA protein

 Score = 57.2 bits (138), Expect = 2e-08
 Identities = 44/136 (32%), Positives = 61/136 (44%), Gaps = 22/136 (16%)

Query: 772 LVQQKQAAAIITGKRDVKVKALEAAEAAKRLAVEKENERKMKKEALKLERAKLEQENLKQ 831
             +QKQA          + KA +AAEA  +   E E E+K K+EA    + + E+E   +
Sbjct: 115 EEKQKQAE---------EAKAKQAAEAKAKA--EAEAEKKAKEEA----KKQAEEEAKAK 159

Query: 832 LELQKKKKEEEKKKKL------ADMAARKRQREEEERKEKERKRKRVMESRRQQQEHEEK 885
              + KKK  E KKK          A  K + EE + K +  K K   E+   + E E  
Sbjct: 160 AAAEAKKKAAEAKKKAEAEAKAKAEAKAKAKAEEAKAKAEAAKAKAAAEAAA-KAEAEAA 218

Query: 886 LRAKKEEERKKKEADL 901
             A  E ERK  EA+L
Sbjct: 219 AAAAAEAERKADEAEL 234

TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB [Transport and binding proteins, Other, Cellular processes, Pathogenesis]. Length = 346

>gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin

 Score = 56.1 bits (136), Expect = 4e-08
 Identities = 26/114 (22%), Positives = 59/114 (51%), Gaps = 7/114 (6%)

Query: 794 EAAEAAKRLAVEKENER---KMKKEALKLERAKLEQENLKQLELQKKKKEEEKKKKLADM 850
           E    A+R   ++E ER   +++ +  + E  + E + L+    Q++ + +E++K+  + 
Sbjct: 166 EEEREAERRERKEEKEREVARLRAQQEEAEDEREELDELRADLYQEEYERKERQKEKEEA 225

Query: 851 AARKRQREE--EERKE--KERKRKRVMESRRQQQEHEEKLRAKKEEERKKKEAD 900
             R+RQ++E    R+E  +E++ +   E   ++ E E  L  + E+E  ++E  
Sbjct: 226 EKRRRQKQELQRAREEQIEEKEERLQEERAEEEAERERMLEKQAEDEELEQENA 279

Trichoplein or mitostatin, was first defined as a meiosis-specific nuclear structural protein. It has since been linked with mitochondrial movement. It is associated with the mitochondrial outer membrane, and over-expression leads to reduction in mitochondrial motility whereas lack of it enhances mitochondrial movement. The activity appears to be mediated through binding the mitochondria to the actin intermediate filaments (IFs). Length = 349

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 57.5 bits (138), Expect = 4e-08
 Identities = 43/171 (25%), Positives = 74/171 (43%), Gaps = 14/171 (8%)

Query: 774  QQKQAAAIITGKRDVKVKALEAAEAAKRLAVEKENERKMKKEALK--------LERAKLE 825
            + K+AA     + +      EAAE     A +K+ E K K +A K         + AK +
Sbjct: 1340 EAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKK 1399

Query: 826  QENLKQLELQKKKKEEEKKK--KLADMAARKRQREEEERKEKERKRKRVMESRRQQQEHE 883
             E  K+   + KK    KKK  +    A  K++ +E ++K +E K+    + + ++ +  
Sbjct: 1400 AEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKA 1459

Query: 884  EKLRAKKEEERKKKEADLLMVSKDETWRDYKRVKDQGEENPAKMKKTESKA 934
            E+ + K EE +K  EA      K E  +     K + EE   K  + +  A
Sbjct: 1460 EEAKKKAEEAKKADEAK----KKAEEAKKADEAKKKAEEAKKKADEAKKAA 1506

Length = 2084

>gnl|CDD|234017 TIGR02794, tolA_full, TolA protein

 Score = 55.6 bits (134), Expect = 6e-08
 Identities = 34/130 (26%), Positives = 55/130 (42%), Gaps = 18/130 (13%)

Query: 771 PLVQQKQAAAIITGKRDVKVKALEAAEAAKRLAVEKENERKMKKEALKLERAKLEQENLK 830
               +K A       +  + K  +A EA  +    +  E K K EA + E+ K ++E  K
Sbjct: 97  RAAAEKAAKQAEQAAKQAEEKQKQAEEAKAK----QAAEAKAKAEA-EAEK-KAKEEAKK 150

Query: 831 QLELQKKKKEEEKKKKLADMAARKRQREEEERKEKERKRKRVMESRRQQQEHEEKLRAKK 890
           Q E + K K   + KK A  A +K + E + + E + K K             E+ +AK 
Sbjct: 151 QAEEEAKAKAAAEAKKKAAEAKKKAEAEAKAKAEAKAKAKA------------EEAKAKA 198

Query: 891 EEERKKKEAD 900
           E  + K  A+
Sbjct: 199 EAAKAKAAAE 208

TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB [Transport and binding proteins, Other, Cellular processes, Pathogenesis]. Length = 346

>gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin

 Score = 54.5 bits (132), Expect = 1e-07
 Identities = 30/91 (32%), Positives = 51/91 (56%), Gaps = 5/91 (5%)

Query: 818 KLERAKLEQENLKQLELQKKKKEEEKK--KKLADMAARKRQREEEERKEKERKRK-RVME 874
           KL  AK+ +E   Q+E +K+ K EEK+  +++ +M   +R +   E +E+ERKRK    E
Sbjct: 12  KLRAAKVNKERDAQIEEKKRIKAEEKEEERRIDEMMEEERLKALAEEEERERKRKEERRE 71

Query: 875 SRRQQQE--HEEKLRAKKEEERKKKEADLLM 903
            R   QE   E + R ++E E + +E + + 
Sbjct: 72  GRAVLQEQIEEREKRRQEEYEERLQEREQMD 102

Trichoplein or mitostatin, was first defined as a meiosis-specific nuclear structural protein. It has since been linked with mitochondrial movement. It is associated with the mitochondrial outer membrane, and over-expression leads to reduction in mitochondrial motility whereas lack of it enhances mitochondrial movement. The activity appears to be mediated through binding the mitochondria to the actin intermediate filaments (IFs). Length = 349

>gnl|CDD|234017 TIGR02794, tolA_full, TolA protein

 Score = 54.8 bits (132), Expect = 1e-07
 Identities = 37/128 (28%), Positives = 62/128 (48%), Gaps = 12/128 (9%)

Query: 776 KQAAAIITGKRDVKVKALEAAEAAKRLAVEKENERKMKKEALK-LERAKLEQENLKQLEL 834
           +QA  I   K+    K  E  +  ++ A E E +R  ++   K LE+    ++  KQ E 
Sbjct: 50  QQANRIQQQKKPAAKKEQERQKKLEQQAEEAEKQRAAEQARQKELEQRAAAEKAAKQAEQ 109

Query: 835 QKKKKEEEKKKKLADMAARKRQREEEERK---EKERKRKRVMESRRQQQEHEEKLRAKKE 891
             K+ EE++K+     A   + ++  E K   E E ++K   E+++Q    EE+ +AK  
Sbjct: 110 AAKQAEEKQKQ-----AEEAKAKQAAEAKAKAEAEAEKKAKEEAKKQA---EEEAKAKAA 161

Query: 892 EERKKKEA 899
            E KKK A
Sbjct: 162 AEAKKKAA 169

TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB [Transport and binding proteins, Other, Cellular processes, Pathogenesis]. Length = 346

>gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]

 Score = 54.6 bits (131), Expect = 1e-07
 Identities = 43/176 (24%), Positives = 84/176 (47%), Gaps = 10/176 (5%)

Query: 774 QQKQAAAIITGKRDVKVKALEAAEAAKRL-AVEKENERKMKKEALK-LERAKLEQENLKQ 831
            Q Q ++   G++  K K  + AE  K   A E+E  ++++KE LK  E+ K  +E  KQ
Sbjct: 67  IQSQQSSAKKGEQQRKKKEEQVAEELKPKQAAEQERLKQLEKERLKAQEQQKQAEEAEKQ 126

Query: 832 LELQKKKKEEEKKKKLADMAARKRQREEEERKEKE--RKRKRVMESRR---QQQEHEEKL 886
            +L++K++EE+ +K  A+   +K++ E  + K      K K   E+++   +  +  E+ 
Sbjct: 127 AQLEQKQQEEQARKAAAE---QKKKAEAAKAKAAAEAAKLKAAAEAKKKAEEAAKAAEEA 183

Query: 887 RAKKEEERKKKEADLLMVSKDETWRDYKRVKDQGEENPAKMKKTESKATVVSTSDA 942
           +AK E    KK+A+    +  E  +     K + E+      + ++ A     +  
Sbjct: 184 KAKAEAAAAKKKAEAEAKAAAEKAKAEAEAKAKAEKKAEAAAEEKAAAEKKKAAAK 239

Length = 387

>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional

 Score = 54.4 bits (131), Expect = 1e-07
 Identities = 32/131 (24%), Positives = 57/131 (43%), Gaps = 7/131 (5%)

Query: 774 QQKQAAAIITGKRDVKVKALEAAEAAKRLAVEKENERKMKKEALKLERAKLEQENLKQLE 833
           QQ+Q +A    ++  K +  +A E  ++ A E+E  ++++KE L  +  K + E   +  
Sbjct: 68  QQQQKSAKRAEEQRKKKEQQQAEELQQKQAAEQERLKQLEKERLAAQEQKKQAEEAAKQA 127

Query: 834 LQKKKKEEEKKKKLADMA-----ARKRQREEEERKEKERKRKRVMESRRQQQEHEEKLRA 888
             K+K+ EE   K A  A     A  ++     +K     +K+      ++   E K   
Sbjct: 128 ALKQKQAEEAAAKAAAAAKAKAEAEAKRAAAAAKKAAAEAKKKAEAEAAKKAAAEAK--K 185

Query: 889 KKEEERKKKEA 899
           K E E   K A
Sbjct: 186 KAEAEAAAKAA 196

Length = 387

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 55.5 bits (133), Expect = 2e-07
 Identities = 46/159 (28%), Positives = 79/159 (49%), Gaps = 6/159 (3%)

Query: 789  KVKALEAAEAAKRLAVEKENERKMKKEALKLERAKLEQENLKQLELQKKKKEEEKKKKLA 848
            K +  + AE AK+   +K    +  +EA K E A++E+      E +K K EE KK + A
Sbjct: 1559 KAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEA 1618

Query: 849  DMAARKRQREEEERKEKERKRKRVMESRRQQQE---HEEKLRAKKEEERKKKEADLLMVS 905
             + A + ++ EEE+K+ E+ +K+  E +++ +E    EE+ + K  EE KK E D     
Sbjct: 1619 KIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEED---KK 1675

Query: 906  KDETWRDYKRVKDQGEENPAKMKKTESKATVVSTSDARE 944
            K E  +  +  + +  E   K  +   KA  +   +A E
Sbjct: 1676 KAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEE 1714

Length = 2084

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 55.5 bits (133), Expect = 2e-07
 Identities = 56/201 (27%), Positives = 99/201 (49%), Gaps = 9/201 (4%)

Query: 785  KRDVKVKALEAAEAAKRLAVEKENERKMKKEALKLERAKLEQENLKQLELQKKKKEEEKK 844
            K+  ++K  EA E  K   ++K  E    K A   E AK  +E+ K+ E  KK +E+EKK
Sbjct: 1633 KKVEQLKKKEAEEKKKAEELKKAEEENKIKAA---EEAKKAEEDKKKAEEAKKAEEDEKK 1689

Query: 845  KKLA-DMAARKRQREEEERKEKERKRKRVMESRRQQQEHEEKL-RAKKEEERKKKEADLL 902
               A    A + ++ EE +K++  ++K+  E ++ ++E++ K   AKKE E  KK+A+  
Sbjct: 1690 AAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEA 1749

Query: 903  MVSKDETWRDYKRVKDQGEENPAKMKKTESKATVVSTSDARETSIVLQVSEPSTDCGDKS 962
               ++E  +     K+  EE  A+  + E +A +    D  +    ++V +   D  D  
Sbjct: 1750 KKDEEEKKKIAHLKKE--EEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKIKDIFDNF 1807

Query: 963  KATGHLEKATENDLVTNQNQE 983
                 +E   E +LV N ++E
Sbjct: 1808 ANI--IEGGKEGNLVINDSKE 1826

Length = 2084

>gnl|CDD|220600 pfam10147, CR6_interact, Growth arrest and DNA-damage-inducible proteins-interacting protein 1

 Score = 52.9 bits (127), Expect = 2e-07
 Identities = 32/112 (28%), Positives = 55/112 (49%), Gaps = 28/112 (25%)

Query: 805 EKENERKMKKEALKLERAKLEQENLKQLELQKKKKEEEKKKKLADMAARKRQREEEERKE 864
           E+  E++ +KEA +  R     +N+ ++            + +AD  A+KR+RE++ R  
Sbjct: 106 EENREQQKEKEARRQAREAEIAKNMAKMP-----------QMIADWRAQKRKREQKARAA 154

Query: 865 KERKRKRVMESRR-----------------QQQEHEEKLRAKKEEERKKKEA 899
           KERK + V E+R                  QQ+E EEK + K+ + R+K+E 
Sbjct: 155 KERKERLVAEAREHFGYWVDPRDPRFQEMLQQKEKEEKKKVKEAKRREKEEK 206

Members of this family of proteins act as negative regulators of G1 to S cell cycle phase progression by inhibiting cyclin-dependent kinases. Inhibitory effects are additive with GADD45 proteins but occur also in the absence of GADD45 proteins. Furthermore, they act as a repressor of the orphan nuclear receptor NR4A1 by inhibiting AB domain-mediated transcriptional activity. Length = 217

>gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin

 Score = 53.4 bits (129), Expect = 3e-07
 Identities = 29/123 (23%), Positives = 58/123 (47%), Gaps = 8/123 (6%)

Query: 790 VKALEAAEAAKRLAVEKENERKMKKEALKLERAKLEQENLKQLELQKKKKEEEKKKKLAD 849
           ++ ++  + A+      E   K KK   +++    E+   K+ E +++++EE K  +   
Sbjct: 105 IERIQEEDEAEAQ----EKREKQKKLREEIDEFNEERIERKEEEKEREREEELKILEYQR 160

Query: 850 MAARKRQREEEERKEKERKRKRVMESRRQQQEHEEKLRAKKEEERKKKEADLLMVSKDET 909
             A + +  E ER+E++ +++R +   R QQE  E  R + +E R    ADL     +  
Sbjct: 161 EKAEREEEREAERRERKEEKEREVARLRAQQEEAEDEREELDELR----ADLYQEEYERK 216

Query: 910 WRD 912
            R 
Sbjct: 217 ERQ 219

Trichoplein or mitostatin, was first defined as a meiosis-specific nuclear structural protein. It has since been linked with mitochondrial movement. It is associated with the mitochondrial outer membrane, and over-expression leads to reduction in mitochondrial motility whereas lack of it enhances mitochondrial movement. The activity appears to be mediated through binding the mitochondria to the actin intermediate filaments (IFs). Length = 349

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 54.4 bits (130), Expect = 3e-07
 Identities = 45/171 (26%), Positives = 84/171 (49%), Gaps = 11/171 (6%)

Query: 774  QQKQAAAIITGKRDVKVKALEAAEAAKRLAVEKENERKMKKEALKL---------ERAKL 824
            + K+ A     K +   KA EAA+A    A ++    + K EA +          + AK 
Sbjct: 1326 EAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKK 1385

Query: 825  EQENLKQLELQKKKKEEEKKK--KLADMAARKRQREEEERKEKERKRKRVMESRRQQQEH 882
            + E  K+ +  KKK EE+KKK  +L   AA K++ +E ++K +E+K+    + + ++ + 
Sbjct: 1386 KAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKK 1445

Query: 883  EEKLRAKKEEERKKKEADLLMVSKDETWRDYKRVKDQGEENPAKMKKTESK 933
             ++ + K EE +K +EA        +     K+ ++  + + AK K  E+K
Sbjct: 1446 ADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAK 1496

Length = 2084

>gnl|CDD|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed

 Score = 53.3 bits (129), Expect = 6e-07
 Identities = 36/145 (24%), Positives = 64/145 (44%), Gaps = 16/145 (11%)

Query: 807 ENERKMKKEALKLERAKLEQENLKQ-LELQKKKKEEEKKKKLADMAARKRQREEEERKEK 865
           E ER+++++A + E    E E LK+ LE +K+K +EE+ K L +     +Q  +E +KE 
Sbjct: 527 ELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQQAIKEAKKEA 586

Query: 866 ERKRKRVMESRRQQ------QEHEEKLRAKKEEERKKKEADLLMVSKDETWRDYKRVKDQ 919
           +   K + + ++         E  E  +   +   KK++       K E  +        
Sbjct: 587 DEIIKELRQLQKGGYASVKAHELIEARKRLNKANEKKEKKKKKQKEKQEELK-------V 639

Query: 920 GEENPAKMKKTESKATVVSTSDARE 944
           G+E   K      K  V+S  D +E
Sbjct: 640 GDE--VKYLSLGQKGEVLSIPDDKE 662

Length = 782

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 53.2 bits (127), Expect = 7e-07
 Identities = 49/175 (28%), Positives = 82/175 (46%), Gaps = 6/175 (3%)

Query: 776  KQAAAIITGKRDVKVKALEA--AEAAKRLAVEKENERKMKK---EALKLERAKLEQENLK 830
            K+AAA      + K KA E   A+ AK+ A E +   + KK   EA K E AK + E  K
Sbjct: 1411 KKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAK 1470

Query: 831  QLELQKKKKEEEKKKKLADMAARKRQREEEERKEKERKRKRVMESRRQQQEHEEKLRAKK 890
            + +  KKK EE KK   A   A + +++ +E K+    +K+  E+++ ++  +     K 
Sbjct: 1471 KADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKA 1530

Query: 891  EEERKKKEA-DLLMVSKDETWRDYKRVKDQGEENPAKMKKTESKATVVSTSDARE 944
            EE +K  EA       K +  +  + +K   E+  A+  K   +   ++   A E
Sbjct: 1531 EEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEE 1585

Length = 2084

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 53.2 bits (127), Expect = 8e-07
 Identities = 39/159 (24%), Positives = 79/159 (49%), Gaps = 6/159 (3%)

Query: 773  VQQKQAAAIITGKRDVKVKALEAAEAAKRLAVEK--ENERKMKKEALKLERAKLEQENLK 830
             ++ + A         K +  + AE A+   V K  E E+KMK E  K    K E+  +K
Sbjct: 1566 AEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAK----KAEEAKIK 1621

Query: 831  QLELQKKKKEEEKKKKLADMAARKRQREEEERKEKERKRKRVMESRRQQQEHEEKLRAKK 890
              EL+K ++E++K ++L    A ++++ EE +K +E  + +  E  ++ +E ++K    K
Sbjct: 1622 AEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAK 1681

Query: 891  EEERKKKEADLLMVSKDETWRDYKRVKDQGEENPAKMKK 929
            + E  +K+A   +  + E  +  + +K +  E   K ++
Sbjct: 1682 KAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEE 1720

Length = 2084

>gnl|CDD|234017 TIGR02794, tolA_full, TolA protein

 Score = 51.8 bits (124), Expect = 9e-07
 Identities = 28/113 (24%), Positives = 53/113 (46%), Gaps = 7/113 (6%)

Query: 788 VKVKALEAAEAAKRLAVEKEN-ERKMKKEALKLERAKLEQENLKQLELQKKKKEEEKKKK 846
           V V     A+ A R+  +K+   +K ++   KLE+   E E  +  E  ++K+ E++   
Sbjct: 41  VLVDPGAVAQQANRIQQQKKPAAKKEQERQKKLEQQAEEAEKQRAAEQARQKELEQRAAA 100

Query: 847 LADMAARKRQREEEERKEKERKRKRVMESRRQQQEHEEKLRAKKEEERKKKEA 899
                  ++  ++ E K+K+       E  + +Q  E K +A+ E E+K KE 
Sbjct: 101 EKAAKQAEQAAKQAEEKQKQ------AEEAKAKQAAEAKAKAEAEAEKKAKEE 147

TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB [Transport and binding proteins, Other, Cellular processes, Pathogenesis]. Length = 346

>gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin

 Score = 51.1 bits (123), Expect = 1e-06
 Identities = 32/126 (25%), Positives = 70/126 (55%), Gaps = 9/126 (7%)

Query: 785 KRDVKVKALEAAEAAKRLAVE-KENERKMKKEALK--LERAKLEQENLKQLELQKKKKEE 841
           KR+ + K  E  +      +E KE E++ ++E     LE  + + E  ++ E ++++++E
Sbjct: 119 KREKQKKLREEIDEFNEERIERKEEEKEREREEELKILEYQREKAEREEEREAERRERKE 178

Query: 842 EKKKKLADMAARKRQREEEERKEKERKRKRVMESRRQQQEHEEKLRAKKEEERKKKEADL 901
           EK++++A + A +++  E+ER+E +  R     +   Q+E+E K R K++EE +K+    
Sbjct: 179 EKEREVARLRA-QQEEAEDEREELDELR-----ADLYQEEYERKERQKEKEEAEKRRRQK 232

Query: 902 LMVSKD 907
             + + 
Sbjct: 233 QELQRA 238

Trichoplein or mitostatin, was first defined as a meiosis-specific nuclear structural protein. It has since been linked with mitochondrial movement. It is associated with the mitochondrial outer membrane, and over-expression leads to reduction in mitochondrial motility whereas lack of it enhances mitochondrial movement. The activity appears to be mediated through binding the mitochondria to the actin intermediate filaments (IFs). Length = 349

>gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]

 Score = 51.9 bits (124), Expect = 1e-06
 Identities = 30/130 (23%), Positives = 55/130 (42%), Gaps = 2/130 (1%)

Query: 772 LVQQKQAAAIITGKRDVKVKALEAAEAAKRLAVE--KENERKMKKEALKLERAKLEQENL 829
           L  Q+Q       ++  +++  +  E A++ A E  K+ E    K A +  + K   E  
Sbjct: 111 LKAQEQQKQAEEAEKQAQLEQKQQEEQARKAAAEQKKKAEAAKAKAAAEAAKLKAAAEAK 170

Query: 830 KQLELQKKKKEEEKKKKLADMAARKRQREEEERKEKERKRKRVMESRRQQQEHEEKLRAK 889
           K+ E   K  EE K K  A  A +K + E +   EK +          ++ E   + +A 
Sbjct: 171 KKAEEAAKAAEEAKAKAEAAAAKKKAEAEAKAAAEKAKAEAEAKAKAEKKAEAAAEEKAA 230

Query: 890 KEEERKKKEA 899
            E+++   +A
Sbjct: 231 AEKKKAAAKA 240

Length = 387

>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional

 Score = 51.3 bits (123), Expect = 1e-06
 Identities = 29/127 (22%), Positives = 53/127 (41%), Gaps = 3/127 (2%)

Query: 774 QQKQAAAIITGKRDVKVKALEAAEAAKRLAVEKENERKMKKEALKLERAKLEQENLKQLE 833
           Q+KQA       +   +K  +A EAA + A   + + + + +       K   E  K+ E
Sbjct: 116 QKKQAEE---AAKQAALKQKQAEEAAAKAAAAAKAKAEAEAKRAAAAAKKAAAEAKKKAE 172

Query: 834 LQKKKKEEEKKKKLADMAARKRQREEEERKEKERKRKRVMESRRQQQEHEEKLRAKKEEE 893
            +  KK   + KK A+  A  +   E ++K +   +K+     +++   E K  A K   
Sbjct: 173 AEAAKKAAAEAKKKAEAEAAAKAAAEAKKKAEAEAKKKAAAEAKKKAAAEAKAAAAKAAA 232

Query: 894 RKKKEAD 900
             K  A+
Sbjct: 233 EAKAAAE 239

Length = 387

>gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin

 Score = 50.7 bits (122), Expect = 2e-06
 Identities = 25/137 (18%), Positives = 70/137 (51%), Gaps = 14/137 (10%)

Query: 775 QKQAAAIITGKRDVKVKALEAAEAAKRLAVEKENERKMKKEALKLERAKLEQENLKQLEL 834
           +++       + + K +  E     +   +E + E+  ++E  + ER + ++E  +++  
Sbjct: 127 REEIDEFNEERIERKEEEKEREREEELKILEYQREKAEREEEREAERRERKEEKEREVAR 186

Query: 835 QKKKKEEEKKKK-----------LADMAARKRQREEEERKEKERKRKRVMESRRQQQEH- 882
            + ++EE + ++             +   ++RQ+E+EE +++ R+++ +  +R +Q E  
Sbjct: 187 LRAQQEEAEDEREELDELRADLYQEEYERKERQKEKEEAEKRRRQKQELQRAREEQIE-E 245

Query: 883 -EEKLRAKKEEERKKKE 898
            EE+L+ ++ EE  ++E
Sbjct: 246 KEERLQEERAEEEAERE 262

Trichoplein or mitostatin, was first defined as a meiosis-specific nuclear structural protein. It has since been linked with mitochondrial movement. It is associated with the mitochondrial outer membrane, and over-expression leads to reduction in mitochondrial motility whereas lack of it enhances mitochondrial movement. The activity appears to be mediated through binding the mitochondria to the actin intermediate filaments (IFs). Length = 349

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 52.1 bits (124), Expect = 2e-06
 Identities = 39/139 (28%), Positives = 66/139 (47%), Gaps = 5/139 (3%)

Query: 787  DVKVKALEA---AEAAKRLAVEKENERKMKKEALKLERAKLEQENLKQLELQKKKKEEEK 843
            + K KA EA   A+AAK+ A E +   +  K   +    + E    K    +KKK+E +K
Sbjct: 1319 EAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKK 1378

Query: 844  KKKLADMAARKRQREEEERKEKERKRKRVMESRRQQQEHEEKLRAKKEEERKKKEADLLM 903
            K   A   A ++++ +E +K+ E  +K+  E ++     ++   AKK+ E KKK  +   
Sbjct: 1379 KADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEA-- 1436

Query: 904  VSKDETWRDYKRVKDQGEE 922
              K E  +     K + EE
Sbjct: 1437 KKKAEEAKKADEAKKKAEE 1455

Length = 2084

>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional

 Score = 50.6 bits (121), Expect = 3e-06
 Identities = 38/140 (27%), Positives = 57/140 (40%), Gaps = 10/140 (7%)

Query: 774 QQKQAA-AIITGKRDVKVKALEAAEAAKRLAVEKENERKMKKEALKLERAKLEQENLKQL 832
           +QKQA  A        K KA   A+ A   A +   E K K EA   ++A  E       
Sbjct: 130 KQKQAEEAAAKAAAAAKAKAEAEAKRAAAAAKKAAAEAKKKAEAEAAKKAAAEA------ 183

Query: 833 ELQKKKKEEEKKKKLADMAARKRQREEEERKEKERKRKRVMESRRQQQEHEEKLRAKKEE 892
              KKK E E   K A  A +K + E +++   E K+K   E++    +   + +A  E+
Sbjct: 184 ---KKKAEAEAAAKAAAEAKKKAEAEAKKKAAAEAKKKAAAEAKAAAAKAAAEAKAAAEK 240

Query: 893 ERKKKEADLLMVSKDETWRD 912
               K A+    +K     D
Sbjct: 241 AAAAKAAEKAAAAKAAAEVD 260

Length = 387

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 50.5 bits (120), Expect = 5e-06
 Identities = 52/224 (23%), Positives = 98/224 (43%), Gaps = 11/224 (4%)

Query: 789  KVKALEAAEAAKRLAVEKENERKMKKEALKLERAKLEQENLKQLELQKKKKEEEKKKK-- 846
            K +  + A+ AK+ A E +   + KK+A   E AK + +  K+   + KK  E  K +  
Sbjct: 1297 KAEEKKKADEAKKKAEEAKKADEAKKKA---EEAKKKADAAKKKAEEAKKAAEAAKAEAE 1353

Query: 847  -LADMAARKRQREEEERKEKERKRKRVMESRRQQQEHEEKLRAKKEEERKKKEADLLMVS 905
              AD A    ++ E   K+KE  +K+   ++++ +E ++   AKK+ E  KK+AD L   
Sbjct: 1354 AAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELK-K 1412

Query: 906  KDETWRDYKRVKDQGEE----NPAKMKKTESKATVVSTSDARETSIVLQVSEPSTDCGDK 961
                 +     K + EE    + AK K  E+K    +   A E     +  + + +    
Sbjct: 1413 AAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKA 1472

Query: 962  SKATGHLEKATENDLVTNQNQEPSYDISPYKDSDNEEEEDDDDR 1005
             +A    E+A + D    + +E        K +   +++ D+ +
Sbjct: 1473 DEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAK 1516

Length = 2084

>gnl|CDD|188306 TIGR03319, RNase_Y, ribonuclease Y

 Score = 49.9 bits (120), Expect = 5e-06
 Identities = 38/132 (28%), Positives = 64/132 (48%), Gaps = 20/132 (15%)

Query: 789 KVKALEAAEAAKRLAVEKENERKMKKEALKLERAKLEQ--ENL-KQLELQKKKKE--EEK 843
           K   LEA E   +L  E E E K ++  L+    +L Q  E L +++E   KK+E  E+K
Sbjct: 50  KEALLEAKEEVHKLRAELERELKERRNELQRLERRLLQREETLDRKMESLDKKEENLEKK 109

Query: 844 KKKLADMAARKRQREEE-ERKEKERK--------------RKRVMESRRQQQEHEEKLRA 888
           +K+L++      ++EEE E    E++              ++ ++E   ++  HE     
Sbjct: 110 EKELSNKEKNLDEKEEELEELIAEQREELERISGLTQEEAKEILLEEVEEEARHEAAKLI 169

Query: 889 KKEEERKKKEAD 900
           K+ EE  K+EAD
Sbjct: 170 KEIEEEAKEEAD 181

Members of this family are RNase Y, an endoribonuclease. The member from Bacillus subtilis, YmdA, has been shown to be involved in turnover of yitJ riboswitch [Transcription, Degradation of RNA]. Length = 514

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 50.5 bits (121), Expect = 5e-06
 Identities = 41/212 (19%), Positives = 90/212 (42%), Gaps = 14/212 (6%)

Query: 785 KRDVKVKALEAAEAAKRLAVEKENER--KMKKEALKLER-AKLEQENLKQLELQKKKKEE 841
           + + +++ L++     R  +E+  E   ++K+E  +LE    L +E L++LE + ++ EE
Sbjct: 264 EAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEISLLRERLEELENELEELEE 323

Query: 842 EKKKKLADMAARKRQREEEERKEKERKRKRVMESRRQQQEHEEKLRAKKEEERKKKEADL 901
             ++    + A K + EE E   +E ++    E    ++E EEKL A  EE  +  EA  
Sbjct: 324 RLEELKEKIEALKEELEERETLLEELEQLLA-ELEEAKEELEEKLSALLEELEELFEA-- 380

Query: 902 LMVSKDETWRDYKRVKDQGEENPAKMKKTESKATVVSTSD------ARETSIVLQVSEPS 955
             + ++    + +  + + E    K +    +  +   S+           +  ++ E  
Sbjct: 381 --LREELAELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQ 438

Query: 956 TDCGDKSKATGHLEKATENDLVTNQNQEPSYD 987
           T+  + ++    LE+  E      +  E    
Sbjct: 439 TELEELNEELEELEEQLEELRDRLKELERELA 470

Length = 1163

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 50.5 bits (120), Expect = 6e-06
 Identities = 39/146 (26%), Positives = 73/146 (50%), Gaps = 3/146 (2%)

Query: 789  KVKALEAAEAAKRLAVEKENERKMKKEALKLERAKLEQENLKQLELQKKKKEEEKKKKLA 848
            K   L+ A AAK+ A   +  +K  +E  K + AK + E  K+ +  KKK EE KK + A
Sbjct: 1406 KADELKKAAAAKKKA---DEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEA 1462

Query: 849  DMAARKRQREEEERKEKERKRKRVMESRRQQQEHEEKLRAKKEEERKKKEADLLMVSKDE 908
               A + ++ +E +K+ E  +K     ++ ++  ++   AKK  E KKK  +     + +
Sbjct: 1463 KKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAK 1522

Query: 909  TWRDYKRVKDQGEENPAKMKKTESKA 934
               + K+ ++  + + AK  + + KA
Sbjct: 1523 KADEAKKAEEAKKADEAKKAEEKKKA 1548

Length = 2084

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 50.1 bits (119), Expect = 7e-06
 Identities = 54/244 (22%), Positives = 117/244 (47%), Gaps = 13/244 (5%)

Query: 774  QQKQAAAIITGKRDVKVKALEAAEAAKRLAVEKENERKMKKEALKLERAKLEQENLKQLE 833
            ++K+A  +   + + K+KA E A+ A+    + E  +K +++  K   A  ++    +  
Sbjct: 1645 EKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKA 1704

Query: 834  LQKKKKEEEKKKKLADM----AARKRQREEEERKEKERKRK----RVMESRRQQQEHEEK 885
             + KKKE E+KKK  ++       K + EE +++ +E K+K    +  E  +++  H +K
Sbjct: 1705 EELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKK 1764

Query: 886  LRAKKEEERKKKEADLL---MVSKDETWRDY--KRVKDQGEENPAKMKKTESKATVVSTS 940
               KK EE +K++  ++   +  +DE  R    K++KD  +     ++  +    V++ S
Sbjct: 1765 EEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKIKDIFDNFANIIEGGKEGNLVINDS 1824

Query: 941  DARETSIVLQVSEPSTDCGDKSKATGHLEKATENDLVTNQNQEPSYDISPYKDSDNEEEE 1000
               E S + +V++      +++ A    +    N+   + N+E  ++       D+EEE 
Sbjct: 1825 KEMEDSAIKEVADSKNMQLEEADAFEKHKFNKNNENGEDGNKEADFNKEKDLKEDDEEEI 1884

Query: 1001 DDDD 1004
            ++ D
Sbjct: 1885 EEAD 1888

Length = 2084

>gnl|CDD|221389 pfam12037, DUF3523, Domain of unknown function (DUF3523)

 Score = 47.8 bits (114), Expect = 1e-05
 Identities = 27/118 (22%), Positives = 53/118 (44%), Gaps = 10/118 (8%)

Query: 789 KVKALEAAEAAKRLAVEKENERKMKKEALKLERAKLEQENLKQLELQKKKKEEEKKKKLA 848
           K    +  +  +R   + E  RK  ++ L+ +R +  +E LK  E    ++E  ++    
Sbjct: 96  KTLQEQTQQEQQRAQYQDELARKRYQKELEQQR-RQNEELLKMQEESVLRQEAMRRATEE 154

Query: 849 DMAARKRQREEEERK-EKERKRKRVM--------ESRRQQQEHEEKLRAKKEEERKKK 897
           ++   +R+  EEE + E+E  R ++         E R  +  + E L+ K  EER+  
Sbjct: 155 EILEMRRETIEEEAELERENIRAKIEAEARGRAKEERENEDINREMLKLKANEERETV 212

This presumed domain is functionally uncharacterized. This domain is found in eukaryotes. This domain is typically between 257 to 277 amino acids in length. This domain is found associated with pfam00004. This domain has a conserved LER sequence motif. Length = 276

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 48.2 bits (114), Expect = 2e-05
 Identities = 39/171 (22%), Positives = 77/171 (45%), Gaps = 11/171 (6%)

Query: 774  QQKQAAAIITGKRDVKVKALEA---AEAAKRLAVEKENERKMKKEALKLERAKLEQENLK 830
            + K+A        + K KA  A   AE AK+ A   + E +   +  +    K E    K
Sbjct: 1313 EAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKK 1372

Query: 831  QLELQKK----KKEEEKKKKLADMAAR----KRQREEEERKEKERKRKRVMESRRQQQEH 882
            + E +KK    KK+ E+KKK  +   +    K++ +E ++    +K+    + + ++++ 
Sbjct: 1373 KEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKK 1432

Query: 883  EEKLRAKKEEERKKKEADLLMVSKDETWRDYKRVKDQGEENPAKMKKTESK 933
             ++ + K EE +K  EA        +     K+ ++  + + AK K  E+K
Sbjct: 1433 ADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAK 1483

Length = 2084

>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional

 Score = 47.9 bits (114), Expect = 2e-05
 Identities = 35/139 (25%), Positives = 62/139 (44%), Gaps = 14/139 (10%)

Query: 799 AKRLAVEKENERKMKKEALKLERAKLEQENLKQLELQKKKKEEEKKKKLADMAARKRQRE 858
           AKR   +++ + + + E L+ ++A  EQE LKQLE ++   +E+KK+     A    ++ 
Sbjct: 74  AKRAEEQRKKKEQQQAEELQQKQAA-EQERLKQLEKERLAAQEQKKQ-----AEEAAKQA 127

Query: 859 EEERKEKERKRKRVMESRRQQQEHEEK---LRAKKEEERKKKEADLLMVSKDETWRDYKR 915
             ++K+ E    +   + + + E E K     AKK     KK+A+     K         
Sbjct: 128 ALKQKQAEEAAAKAAAAAKAKAEAEAKRAAAAAKKAAAEAKKKAEAEAAKKAAA-----E 182

Query: 916 VKDQGEENPAKMKKTESKA 934
            K + E   A     E+K 
Sbjct: 183 AKKKAEAEAAAKAAAEAKK 201

Length = 387

>gnl|CDD|220383 pfam09756, DDRGK, DDRGK domain

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 31/97 (31%), Positives = 57/97 (58%), Gaps = 11/97 (11%)

Query: 830 KQLELQKKKKEEEKKKKLADMAARKRQREEEERKEKERKR---KRVMESRRQQQEHEEKL 886
           K++  +K+ K EEK+       AR++QRE EE + +ERK+   KR  E + +++  EE+ 
Sbjct: 1   KKIGAKKRAKLEEKQ-------ARRQQREAEEEEREERKKLEEKREGERKEEEELEEERE 53

Query: 887 RAKKEEERKKKEADLLMVSKD-ETWRDYKRVKDQGEE 922
           + K+EEERK++E       ++ E  +    V+++G +
Sbjct: 54  KKKEEEERKEREEQARKEQEEYEKLKSSFVVEEEGTD 90

This is a family of proteins of approximately 300 residues, found in plants and vertebrates. They contain a highly conserved DDRGK motif. Length = 189

>gnl|CDD|221389 pfam12037, DUF3523, Domain of unknown function (DUF3523)

 Score = 46.7 bits (111), Expect = 3e-05
 Identities = 37/124 (29%), Positives = 53/124 (42%), Gaps = 25/124 (20%)

Query: 792 ALE-AAEAAKRLAVEKENERKMKKEALKLERAKLEQENLKQLELQKKKKEEEKKKKLADM 850
           ALE  A+A + L           K+A +L +    QE  +Q EL+ K KE E ++  A  
Sbjct: 33  ALERGAKALREL-----ESSPHAKKAFELSKM---QEKTRQAELEAKIKEYEAQQAQAK- 83

Query: 851 AARKRQREEEERK---------------EKERKRKRVMESRRQQQEHEEKLRAKKEEERK 895
             R R   EE RK               + E  RKR  +   QQ+   E+L   +EE   
Sbjct: 84  LERARVEAEERRKTLQEQTQQEQQRAQYQDELARKRYQKELEQQRRQNEELLKMQEESVL 143

Query: 896 KKEA 899
           ++EA
Sbjct: 144 RQEA 147

This presumed domain is functionally uncharacterized. This domain is found in eukaryotes. This domain is typically between 257 to 277 amino acids in length. This domain is found associated with pfam00004. This domain has a conserved LER sequence motif. Length = 276

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 47.4 bits (112), Expect = 4e-05
 Identities = 51/177 (28%), Positives = 73/177 (41%), Gaps = 16/177 (9%)

Query: 774  QQKQAAAIITGKRDVKVKALE---AAEAAKRLAVEKENERKMKKEALKLERAKLEQENLK 830
            + K+ A       + K KA E   A EA K    +K  E K   EA K E  K   E  K
Sbjct: 1494 EAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKK 1553

Query: 831  QLELQK---------KKKEEEKKKKLADMAARKRQ----REEEERKEKERKRKRVMESRR 877
              EL+K          KK EE K      A   ++    R EE  K  E ++K   E  +
Sbjct: 1554 AEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAK 1613

Query: 878  QQQEHEEKLRAKKEEERKKKEADLLMVSKDETWRDYKRVKDQGEENPAKMKKTESKA 934
            + +E + K    K+ E +KK+ + L   + E  +  + +K   EEN  K  +   KA
Sbjct: 1614 KAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKA 1670

Length = 2084

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 47.4 bits (112), Expect = 4e-05
 Identities = 33/144 (22%), Positives = 70/144 (48%), Gaps = 1/144 (0%)

Query: 791  KALEAAEAAKRLAVEKENERKMKKEALKLERAKLEQENLKQLELQKKKKEEEKKKKLADM 850
            K  EA + A+    + E  +K ++E    E  K E+  +     ++   + E+ +K  ++
Sbjct: 1224 KKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADEL 1283

Query: 851  AARKRQREEEERKEKERKRKRVMESRRQQQEHEEKLRAKKEEERKKKEADLLMVSKDETW 910
               + +++ +E K+ E K+K   E++++ +E ++   AKK+ E  KK+AD      +E  
Sbjct: 1284 KKAEEKKKADEAKKAEEKKK-ADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAK 1342

Query: 911  RDYKRVKDQGEENPAKMKKTESKA 934
            +  +  K + E    + +  E KA
Sbjct: 1343 KAAEAAKAEAEAAADEAEAAEEKA 1366

Length = 2084

>gnl|CDD|220383 pfam09756, DDRGK, DDRGK domain

 Score = 45.1 bits (107), Expect = 4e-05
 Identities = 29/98 (29%), Positives = 52/98 (53%), Gaps = 7/98 (7%)

Query: 806 KENERKMKKEALKLERAKLEQENLKQLELQKKKKEEEKKKKLADMAARKRQREEEERKEK 865
           K   +K  K   K  R + ++E  ++   ++KK EE+++ +  +    +   EE E+K++
Sbjct: 2   KIGAKKRAKLEEKQAR-RQQREAEEEEREERKKLEEKREGERKE---EEELEEEREKKKE 57

Query: 866 ERKRKRVMESRRQQQEHEEKLRAK---KEEERKKKEAD 900
           E +RK   E  R++QE  EKL++    +EE   K  AD
Sbjct: 58  EEERKEREEQARKEQEEYEKLKSSFVVEEEGTDKLSAD 95

This is a family of proteins of approximately 300 residues, found in plants and vertebrates. They contain a highly conserved DDRGK motif. Length = 189

>gnl|CDD|216108 pfam00769, ERM, Ezrin/radixin/moesin family

 Score = 46.3 bits (110), Expect = 4e-05
 Identities = 44/210 (20%), Positives = 85/210 (40%), Gaps = 7/210 (3%)

Query: 797  EAAKRLAVEKENERKMKKEALKLERAKLEQENLKQLELQKKKKEEEKKKKLADMAARKRQ 856
            E  +R+   +E+ R+ +KE  + E   LE E   + E ++ +  E+K  +L +   R  +
Sbjct: 9    ELEERMEQMEEDMRRAQKELEEYEETALELEEKLKQEEEEAQLLEKKADELEEENRRLEE 68

Query: 857  REEEERKEKERKRKRVMESRRQQQEHEEKLRAKKEEERKKKEADLLMVSKDETWRDYKRV 916
                  +E+ER    V E+  +  + EE  R KKE E ++ + +L    +    R  + +
Sbjct: 69   EAAASEEERERLEAEVDEATAEVAKLEE-EREKKEAETRQLQQELREAQEAHE-RARQEL 126

Query: 917  KDQGEENPAKMKKTESKATVVSTSDARETSIVLQVSEPSTDCGDKSKATGHLEKATENDL 976
             +      A               D         + E   D  D+S+    +  A +N+ 
Sbjct: 127  LEAAAAPTAPPHVAAPVNGEQLEPDDNGEEASADL-ETDPDMKDRSEEE-RVTYAEKNER 184

Query: 977  VTNQNQEPSYDISPYKDSDNEEEEDDDDRL 1006
            +  Q Q    +++  +D   E +E  +D L
Sbjct: 185  LQTQLQALKSELAAARD---ESKETANDIL 211

This family of proteins contain a band 4.1 domain (pfam00373), at their amino terminus. This family represents the rest of these proteins. Length = 244

>gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

 Score = 47.0 bits (112), Expect = 4e-05
 Identities = 24/104 (23%), Positives = 44/104 (42%), Gaps = 15/104 (14%)

Query: 790 VKALEAAEAAKR------LAVEKENERKMKKEALKLERAKLEQENLKQLELQKKKKEEEK 843
           + A+ A  AA++      L+ ++  + K+ +  L  ER K   +   +L   +KK EE +
Sbjct: 173 LAAVRAEIAAEQAELTTLLSEQRAQQAKLAQ--LLEERKKTLAQLNSELSADQKKLEELR 230

Query: 844 KKK--LADMAAR-----KRQREEEERKEKERKRKRVMESRRQQQ 880
             +  L +  A       + RE     E    R R  E++R  +
Sbjct: 231 ANESRLKNEIASAEAAAAKAREAAAAAEAAAARARAAEAKRTGE 274

Length = 420

>gnl|CDD|202427 pfam02841, GBP_C, Guanylate-binding protein, C-terminal domain

 Score = 46.5 bits (111), Expect = 4e-05
 Identities = 26/115 (22%), Positives = 63/115 (54%), Gaps = 6/115 (5%)

Query: 790 VKALEAAEAAKRLAVEK---ENERKMKKEALKLERAKLEQENLKQLELQKKKKEEEKKKK 846
           + + EA E A  L  ++     E+ ++ E  K E A+ EQE L++ + ++++  E +++ 
Sbjct: 182 LNSKEAVEEAI-LQTDQALTAKEKAIEAERAKAEAAEAEQELLREKQKEEEQMMEAQERS 240

Query: 847 LADMAARKRQREEEERKEKERKRKRVMESRRQQQEHEEKLRAKKEEERKKKEADL 901
             +   +  ++ E ER++   +++R++E + Q+Q  EE L+   + E +  + ++
Sbjct: 241 YQEHVKQLIEKMEAEREKLLAEQERMLEHKLQEQ--EELLKEGFKTEAESLQKEI 293

Transcription of the anti-viral guanylate-binding protein (GBP) is induced by interferon-gamma during macrophage induction. This family contains GBP1 and GPB2, both GTPases capable of binding GTP, GDP and GMP. Length = 297

>gnl|CDD|221408 pfam12072, DUF3552, Domain of unknown function (DUF3552)

 Score = 45.2 bits (108), Expect = 5e-05
 Identities = 43/147 (29%), Positives = 76/147 (51%), Gaps = 28/147 (19%)

Query: 775 QKQAAAIITGKRDVKVKALEAAEAAKRLAVEKENE-RKMKKEALKLERAKLEQ--ENL-K 830
           +K+A A+   K++     LEA E   +L  E E E ++ + E  + E+ +L Q  E L +
Sbjct: 44  KKEAEAL---KKE---ALLEAKEEIHKLRAEAERELKERRNELQRQEK-RLLQKEETLDR 96

Query: 831 QLELQKKKKE--EEKKKKLADMAARKRQREEE--ERKEKERK-------------RKRVM 873
           + E  +KK+E  EEK+K+LA    +  ++EEE  E  E++++             ++ ++
Sbjct: 97  KDESLEKKEESLEEKEKELAARQQQLEEKEEELEELIEEQQQELERISGLTAEEAKEILL 156

Query: 874 ESRRQQQEHEEKLRAKKEEERKKKEAD 900
           E    + +HE     K+ EE  K+EAD
Sbjct: 157 EEVEAELKHEAAKMIKEIEEEAKEEAD 183

This presumed domain is functionally uncharacterized. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with pfam00013, pfam01966. This domain has a single completely conserved residue A that may be functionally important. Length = 201

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 47.1 bits (111), Expect = 6e-05
 Identities = 52/242 (21%), Positives = 109/242 (45%), Gaps = 23/242 (9%)

Query: 787  DVKVKALEA--AEAAKRLAVEKENERKMKKEALKLERA----KLEQENLKQLELQKKKKE 840
            + K KA EA  AE AK+ A E +   + KK+A + ++A    K  +E  K+ +  KK  E
Sbjct: 1448 EAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAE 1507

Query: 841  EEKKKKLADMAARKRQREE----------EERKEKERKRK----RVMESRRQQQEHEEKL 886
             +KK   A  A   ++ +E          +E K+ E K+K    +  E  ++ +E ++  
Sbjct: 1508 AKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAE 1567

Query: 887  RAKKEEERKK---KEADLLMVSKDETWRDYKRVKDQGEENPAKMKKTESKATVVSTSDAR 943
             AKK EE K    ++A+    +++    +  ++ ++ ++  A+  K   +A + +    +
Sbjct: 1568 EAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKK 1627

Query: 944  ETSIVLQVSEPSTDCGDKSKATGHLEKATENDLVTNQNQEPSYDISPYKDSDNEEEEDDD 1003
                  +V +      ++ K    L+KA E + +    +    +    K  + ++ E+D+
Sbjct: 1628 AEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDE 1687

Query: 1004 DR 1005
             +
Sbjct: 1688 KK 1689

Length = 2084

>gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]

 Score = 46.5 bits (110), Expect = 6e-05
 Identities = 44/220 (20%), Positives = 81/220 (36%), Gaps = 9/220 (4%)

Query: 774 QQKQAAA--IITGKRDVKVKALEAAEAAKRLAVEKENERKMKKEALKLERAKLEQENLKQ 831
           + KQAA    +      ++KA E  + A+    + + E+K ++E  +   A    E  K+
Sbjct: 93  KPKQAAEQERLKQLEKERLKAQEQQKQAEEAEKQAQLEQKQQEEQARKAAA----EQKKK 148

Query: 832 LELQKKKKEEEKKKKLADMAARKRQREEEERKEKERKRKRVMESRRQQQEHEEKLRAKKE 891
            E  K K   E  K  A   A K++ EE  +  +E K K    + +++ E E K  A  E
Sbjct: 149 AEAAKAKAAAEAAKLKAAAEA-KKKAEEAAKAAEEAKAKAEAAAAKKKAEAEAK--AAAE 205

Query: 892 EERKKKEADLLMVSKDETWRDYKRVKDQGEENPAKMKKTESKATVVSTSDARETSIVLQV 951
           + + + EA      K E   + K   ++ +          + A   +   A   ++    
Sbjct: 206 KAKAEAEAKAKAEKKAEAAAEEKAAAEKKKAAAKAKADKAAAAAKAAERKAAAAALDDIF 265

Query: 952 SEPSTDCGDKSKATGHLEKATENDLVTNQNQEPSYDISPY 991
              S+         G    +++       +     DI  Y
Sbjct: 266 GGLSSGKNAPKTGGGAKNASSQGSGAAKNSGASGADIDQY 305

Length = 387

>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain

 Score = 46.9 bits (111), Expect = 6e-05
 Identities = 35/222 (15%), Positives = 84/222 (37%), Gaps = 4/222 (1%)

Query: 787  DVKVKALEAAEAAKRLAVEKENERKMKKEALKLERAKLEQENLKQLELQKKKKEEEKKKK 846
              KV+  +     +   +E++ + K ++E     + + E+E   +L L++K+  EE++K 
Sbjct: 725  ADKVQEAQDKINEELKLLEQKIKEKEEEEEKSRLKKEEEEEEKSELSLKEKELAEEEEKT 784

Query: 847  LADMAAR----KRQREEEERKEKERKRKRVMESRRQQQEHEEKLRAKKEEERKKKEADLL 902
                       K + +EEE +  E + K   E   ++Q   E+    KEEE ++   +L 
Sbjct: 785  EKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELK 844

Query: 903  MVSKDETWRDYKRVKDQGEENPAKMKKTESKATVVSTSDARETSIVLQVSEPSTDCGDKS 962
               K E   + +  + + E    ++ +              +  +  +  +   +  +  
Sbjct: 845  EEQKLEKLAEEELERLEEEITKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELE 904

Query: 963  KATGHLEKATENDLVTNQNQEPSYDISPYKDSDNEEEEDDDD 1004
            + +       E +    +       I    +S+ EE   ++ 
Sbjct: 905  EESQKDNLLEEKENEIEERIAEEAIILLKYESEPEELLLEEA 946

This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination. Length = 1162

>gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin

 Score = 46.1 bits (110), Expect = 7e-05
 Identities = 28/120 (23%), Positives = 58/120 (48%), Gaps = 7/120 (5%)

Query: 774 QQKQAAAIITGKRDVKVKALEAAEAAK--RLAVEKENERKMKKEALKLERAKLEQENLKQ 831
           ++++A      K++++ +A E     K  RL  E+  E   ++  L     + E E L+Q
Sbjct: 221 EKEEAEKRRRQKQELQ-RAREEQIEEKEERLQEERAEEEAERERML---EKQAEDEELEQ 276

Query: 832 LELQKKK-KEEEKKKKLADMAARKRQREEEERKEKERKRKRVMESRRQQQEHEEKLRAKK 890
              +K++ K  E +++L      K +R   ER+E+  + +R+ E   ++Q   E+ R + 
Sbjct: 277 ENAEKRRMKRLEHRRELEQQIEEKEERRAAEREEELEEGERLREEEAERQARIEEERQRL 336

Trichoplein or mitostatin, was first defined as a meiosis-specific nuclear structural protein. It has since been linked with mitochondrial movement. It is associated with the mitochondrial outer membrane, and over-expression leads to reduction in mitochondrial motility whereas lack of it enhances mitochondrial movement. The activity appears to be mediated through binding the mitochondria to the actin intermediate filaments (IFs). Length = 349

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 46.3 bits (109), Expect = 1e-04
 Identities = 45/166 (27%), Positives = 77/166 (46%), Gaps = 11/166 (6%)

Query: 787  DVKVKALEAAEAAKRLAVEKENERKMKKEALK--LERAKLEQENLKQLELQKKKKEE--E 842
            + K KA EA +A +  A +K  E K K +A K   E AK   E  K        + E  E
Sbjct: 1306 EAKKKAEEAKKADE--AKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAE 1363

Query: 843  KKKKLADMAARKRQREEEERKEKERKRKRVMESRRQQQEHEEKLRAKKEEERKKKEADLL 902
            +K + A+    + +++ +  K+K  ++K+  E++++ +E ++K    K+    KK+AD  
Sbjct: 1364 EKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEA 1423

Query: 903  MVSKDETWRDYKRVKDQGEE----NPAKMKKTESKATVVSTSDARE 944
               K E  +     K + EE    + AK K  E+K    +   A E
Sbjct: 1424 K-KKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEE 1468

Length = 2084

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 46.2 bits (110), Expect = 1e-04
 Identities = 25/112 (22%), Positives = 54/112 (48%), Gaps = 7/112 (6%)

Query: 794 EAAEAAKRLAVEKENERKMKKEALKLERAKLEQENLKQLELQKKKKEEEKKKKLADMA-- 851
             AE A+R   E + E +  + AL L + K  ++ L++LE +  + EEE ++   ++   
Sbjct: 207 RQAEKAER-YQELKAELRELELALLLAKLKELRKELEELEEELSRLEEELEELQEELEEA 265

Query: 852 ----ARKRQREEEERKEKERKRKRVMESRRQQQEHEEKLRAKKEEERKKKEA 899
                  +   EE R+E E  ++ ++E + + +E E ++   +E   + +  
Sbjct: 266 EKEIEELKSELEELREELEELQEELLELKEEIEELEGEISLLRERLEELENE 317

Length = 1163

>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain

 Score = 46.1 bits (109), Expect = 1e-04
 Identities = 37/199 (18%), Positives = 83/199 (41%), Gaps = 10/199 (5%)

Query: 789 KVKALEAAEAAKRLAVEKE----NERKMKKEALKLERAKLEQENLKQLELQKKKKEEEKK 844
           KV+ +   +  +RL +E+E     E++ KKE LK    + E      ++L++ K +E K 
Sbjct: 144 KVEIIAMMKPERRLEIEEEAAGSREKRKKKERLKKLIEETENLAELIIDLEELKLQELKL 203

Query: 845 KKLADMAARKRQREEEERKEKERKRKRVMESRRQQQEHEEKLRAKKEEERKKKEADLLMV 904
           K+ A  A    Q +E+   E+E           +++    +   + E+E  +     L  
Sbjct: 204 KEQAKKALEYYQLKEKLELEEENLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQELEK 263

Query: 905 SKDETWRDYKRVKDQGEENPAKMKKTESKATVVSTSDARETSIVLQVSEPSTDCGDKSKA 964
            ++       +V  + +E   + K  E +  +++  +    S +L++     D  D+ K 
Sbjct: 264 EEEIL----AQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVD--DEEKL 317

Query: 965 TGHLEKATENDLVTNQNQE 983
               ++  + +    + +E
Sbjct: 318 KESEKELKKLEKELKKEKE 336

This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination. Length = 1162

>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain

 Score = 46.1 bits (109), Expect = 1e-04
 Identities = 32/149 (21%), Positives = 69/149 (46%), Gaps = 2/149 (1%)

Query: 800 KRLAVEKENERKMKKEALKLERAKLEQENLKQLELQKKKKEEEKKKKLADMAARKRQREE 859
           +      +   + ++E ++  + +LE+E     ++ K+ KEEEK+KKL +   +   +EE
Sbjct: 237 EERIDLLQELLRDEQEEIESSKQELEKEEEILAQVLKENKEEEKEKKLQEEELKLLAKEE 296

Query: 860 EERKEKERKRKRVMESRRQQQEHEEK--LRAKKEEERKKKEADLLMVSKDETWRDYKRVK 917
           EE K +  K +R      ++ +  EK   + +KE +++K+E + L     E     +  +
Sbjct: 297 EELKSELLKLERRKVDDEEKLKESEKELKKLEKELKKEKEEIEELEKELKELEIKREAEE 356

Query: 918 DQGEENPAKMKKTESKATVVSTSDARETS 946
           ++ E+     +K E     +      E+ 
Sbjct: 357 EEEEQLEKLQEKLEQLEEELLAKKKLESE 385

This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination. Length = 1162

>gnl|CDD|114011 pfam05262, Borrelia_P83, Borrelia P83/100 protein

 Score = 45.8 bits (108), Expect = 1e-04
 Identities = 33/179 (18%), Positives = 72/179 (40%), Gaps = 12/179 (6%)

Query: 769 FIPLVQQKQAAAIITGKRDVKVKALEAAEAAKRLAVEKENERKMKKEALKL-ERAKLEQE 827
            IPL +   +  +     DV   ++   +  + L  + E     +++   L ER   E  
Sbjct: 157 VIPLKKNILSGNV----SDVDTDSISDKKVVEALREDNEKGVNFRRDMTDLKERESQEDA 212

Query: 828 NLKQL---ELQKKKKEEEKKKKLADMAARKRQREEEERKEKERKRKRVMESRRQQQEHEE 884
              Q    EL KK+ + +K ++ AD A     ++ +E ++K+++ K + +        E+
Sbjct: 213 KRAQQLKEELDKKQIDADKAQQKADFAQDNADKQRDEVRQKQQEAKNLPKPADTSSPKED 272

Query: 885 KLRAKKEEERKKKEADLLMVSKDETWRDYKRVKDQGEENPAKMKKTESKATVVSTSDAR 943
           K    +  E +K+E +   +   +   +  + KD    +  +  K   K       +A+
Sbjct: 273 K----QVAENQKREIEKAQIEIKKNDEEALKAKDHKAFDLKQESKASEKEAEDKELEAQ 327

This family consists of several Borrelia P83/P100 antigen proteins. Length = 489

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 45.9 bits (109), Expect = 1e-04
 Identities = 31/192 (16%), Positives = 74/192 (38%), Gaps = 15/192 (7%)

Query: 756 ESKHNNIVSNITSFIPLVQQKQAAAIITGKRDVKVKALEAAEAAKRLAVEKENERKMKKE 815
           E+    +   +     L+++ +        + +K +  +  +  + L    E  R ++  
Sbjct: 525 EALKEELEEKLEKLENLLEELEELKEKLQLQQLKEELRQLEDRLQELKELLEELRLLRTR 584

Query: 816 ALKL----ERAKLEQENLKQLELQKKKKEEEKKKKLADMAARKRQREEEERKEKERKRKR 871
             +L    ER K  ++ LK+LE +  + EE  +      A  + +  EEE + +  K   
Sbjct: 585 KEELEELRERLKELKKKLKELEERLSQLEELLQSLELSEAENELEEAEEELESELEKLNL 644

Query: 872 VM---ESRRQQQEHEEKLRAKKEEERKKKEADLLMVSKDETWRD--------YKRVKDQG 920
                E  +   E  E+   + E E +++   +    + E   +         ++++++ 
Sbjct: 645 QAELEELLQAALEELEEKVEELEAEIRRELQRIENEEQLEEKLEELEQLEEELEQLREEL 704

Query: 921 EENPAKMKKTES 932
           EE   K+ + E 
Sbjct: 705 EELLKKLGEIEQ 716

Length = 908

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 45.5 bits (107), Expect = 2e-04
 Identities = 33/139 (23%), Positives = 61/139 (43%), Gaps = 13/139 (9%)

Query: 806  KENERKMKKEALKLERAKLEQENLKQLELQKKKKEEEKKKKLADMAARKRQREEEERKEK 865
            K +E K  +E  K + AK  +E  K  E +KK +E +K  +    A   +++ +  +K+ 
Sbjct: 1279 KADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKA 1338

Query: 866  ERKRKRVMESRRQQQEHEEKLRA----------KKEEERKKKEADLLMVSKDETWRDYKR 915
            E  +K    ++ + +   ++  A          KKEE +KK +A      K E  +    
Sbjct: 1339 EEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADA---AKKKAEEKKKADE 1395

Query: 916  VKDQGEENPAKMKKTESKA 934
             K + EE+  K  + +  A
Sbjct: 1396 AKKKAEEDKKKADELKKAA 1414

Length = 2084

>gnl|CDD|188306 TIGR03319, RNase_Y, ribonuclease Y

 Score = 44.9 bits (107), Expect = 2e-04
 Identities = 39/175 (22%), Positives = 80/175 (45%), Gaps = 26/175 (14%)

Query: 799 AKRLAVEKENERKMKKEALKLERAKLEQENLKQL-------ELQKKKKE-----EEKKKK 846
            KR+A +K    +   + + +E AK E E LK+        E+ K + E     +E++ +
Sbjct: 19  RKRIAEKKLGSAEELAKRI-IEEAKKEAETLKKEALLEAKEEVHKLRAELERELKERRNE 77

Query: 847 LADMAARKRQREE--EERKEKERKRKRVMESRRQQQEHEEK----LRAKKEEERKKKEAD 900
           L  +  R  QREE  + + E   K++  +E + ++  ++EK       + EE   ++  +
Sbjct: 78  LQRLERRLLQREETLDRKMESLDKKEENLEKKEKELSNKEKNLDEKEEELEELIAEQREE 137

Query: 901 LLMVS--KDETWRD--YKRVKDQGEENPAKM-KKTESKATVVSTSDARETSIVLQ 950
           L  +S    E  ++   + V+++     AK+ K+ E +A     +D +   I+  
Sbjct: 138 LERISGLTQEEAKEILLEEVEEEARHEAAKLIKEIEEEAK--EEADKKAKEILAT 190

Members of this family are RNase Y, an endoribonuclease. The member from Bacillus subtilis, YmdA, has been shown to be involved in turnover of yitJ riboswitch [Transcription, Degradation of RNA]. Length = 514

>gnl|CDD|114011 pfam05262, Borrelia_P83, Borrelia P83/100 protein

 Score = 45.0 bits (106), Expect = 2e-04
 Identities = 39/181 (21%), Positives = 82/181 (45%), Gaps = 13/181 (7%)

Query: 788 VKVKALEAAEAAKRLAVEKENERKMKKEALKLERAKLEQENLKQLELQKKKKEEEKKKKL 847
             +K  E+ E AKR    KE   K + +A K ++    + +  Q    K++ E  +K++ 
Sbjct: 201 TDLKERESQEDAKRAQQLKEELDKKQIDADKAQQ----KADFAQDNADKQRDEVRQKQQE 256

Query: 848 ADMA---ARKRQREEEERKEKERKRKRVMESRRQQQEHEEKLRAK--KEEERKKKEADLL 902
           A      A     +E+++  + +KR+        ++  EE L+AK  K  + K++     
Sbjct: 257 AKNLPKPADTSSPKEDKQVAENQKREIEKAQIEIKKNDEEALKAKDHKAFDLKQESKASE 316

Query: 903 MVSKDETWRDYKRVKDQGEENPAKMKKTESKATVVSTSDARETSI---VLQVSEPSTDCG 959
             ++D+     K+ +   E+      + E++ T ++  DA ++S     L+V +P T+  
Sbjct: 317 KEAEDKELEAQKKREPVAEDLQKTKPQVEAQPTSLN-EDAIDSSNPVYGLKVVDPITNLS 375

Query: 960 D 960
           +
Sbjct: 376 E 376

This family consists of several Borrelia P83/P100 antigen proteins. Length = 489

>gnl|CDD|222447 pfam13904, DUF4207, Domain of unknown function (DUF4207)

 Score = 43.9 bits (104), Expect = 2e-04
 Identities = 30/131 (22%), Positives = 67/131 (51%), Gaps = 18/131 (13%)

Query: 784 GKRDVKVKALEAAEAAKRLAVEKENERKMKKEALKLERAKLE-QENLKQLELQKKKKEEE 842
            K+  + K L+     K+   ++E E++ ++  L+   AK + +E  +Q   Q  K+   
Sbjct: 95  AKQAQRQKKLQKLLEEKQ---KQEREKEREEAELRQRLAKEKYEEWCRQKAQQAAKQRTP 151

Query: 843 KKKKLADMAA---------RKRQREEEERKEK----ERKRKRVMESRRQQQEHEEKLRAK 889
           K KK A  +A          +R   +EE K++    E K+ +  + +R+++  +++ + +
Sbjct: 152 KHKKEAAESASSSLSGSAKPERNVSQEEAKKRLQEWELKKLKQQQQKREEERRKQRKK-Q 210

Query: 890 KEEERKKKEAD 900
           +EEE +K++A+
Sbjct: 211 QEEEERKQKAE 221

This family is found in eukaryotes; it has several conserved tryptophan residues. The function is not known. Length = 261

>gnl|CDD|220964 pfam11068, DUF2869, Protein of unknown function (DUF2869)

 Score = 41.8 bits (99), Expect = 2e-04
 Identities = 23/72 (31%), Positives = 41/72 (56%), Gaps = 4/72 (5%)

Query: 813 KKEALK-LERAK--LEQENLKQLELQKKKKEEEKKKKLADMAARKRQREEEERKEKERKR 869
           K+E    L+     LEQE L+QLE Q +K  +E +K+ A    + +Q+ E+ER ++  ++
Sbjct: 18  KEELQAELQEQLTQLEQE-LQQLEFQGQKAIKEIRKQSAQQIEQIQQQVEQERAKRLEQK 76

Query: 870 KRVMESRRQQQE 881
            +++    Q QE
Sbjct: 77  NQLLFQIEQVQE 88

This bacterial family of proteins has no known function. Length = 131

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 45.1 bits (107), Expect = 2e-04
 Identities = 37/132 (28%), Positives = 64/132 (48%), Gaps = 6/132 (4%)

Query: 791 KALEAAEAAKRLAVEKENERKMKKEALKLERAKLEQENLKQLELQKKKKEEEKKKKLADM 850
           + LE  +A K L   +E E K  +E L     +L +   K+LE  +K+ EE +KK   + 
Sbjct: 603 EYLELKDAEKELE-REEKELKKLEEELDKAFEELAETE-KRLEELRKELEELEKKYSEEE 660

Query: 851 AARKRQREEEERKEKERKRKRVMESRRQQQEHE---EKLRAKKEE-ERKKKEADLLMVSK 906
               R+   E  +E    R  + E  ++++E +   EKL+ + EE E+ KKE + L  + 
Sbjct: 661 YEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELEKLEKAL 720

Query: 907 DETWRDYKRVKD 918
           +      ++VK 
Sbjct: 721 ERVEELREKVKK 732

Length = 880

>gnl|CDD|219655 pfam07946, DUF1682, Protein of unknown function (DUF1682)

 Score = 44.2 bits (105), Expect = 2e-04
 Identities = 20/67 (29%), Positives = 38/67 (56%), Gaps = 4/67 (5%)

Query: 806 KENERKMKKEALKLERAKLEQENLKQLELQKKKKEEEKKKKLADMAA--RKRQREEEERK 863
                K ++E    E+     E  +Q E Q+KK+E++K+++ A +A    + QR+ EE++
Sbjct: 258 LRKVDKTREEEE--EKILKAAEEERQEEAQEKKEEKKKEEREAKLAKLSPEEQRKLEEKE 315

Query: 864 EKERKRK 870
            K++ RK
Sbjct: 316 RKKQARK 322

The members of this family are all hypothetical eukaryotic proteins of unknown function. One member is described as being an adipocyte-specific protein, but no evidence of this was found. Length = 322

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 44.7 bits (105), Expect = 3e-04
 Identities = 39/140 (27%), Positives = 62/140 (44%), Gaps = 8/140 (5%)

Query: 796  AEAAKRLAVEKENERKMKKEALKLERAKLEQENLKQLELQK----KKKEEEKKKKLADMA 851
            AE AK+   E+ NE   K E  ++      Q  +K  E +K    KK EE+KK   A  A
Sbjct: 1239 AEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKA 1298

Query: 852  ARKRQREEEERKEKERKRKRVMESRRQQQEHEEKLRAKKEEERKKKEADLLMVSKDETWR 911
              K++ +E ++K +E K+    + + ++ + +     KK EE KK        +K E   
Sbjct: 1299 EEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAE----AAKAEAEA 1354

Query: 912  DYKRVKDQGEENPAKMKKTE 931
                 +   E+  A  KK E
Sbjct: 1355 AADEAEAAEEKAEAAEKKKE 1374

Length = 2084

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 44.4 bits (105), Expect = 3e-04
 Identities = 27/137 (19%), Positives = 62/137 (45%), Gaps = 6/137 (4%)

Query: 772 LVQQKQAAAIITGKRDVKVKALEAAEAAKRLAVEKENERKMKKEALKLERAKLEQENLKQ 831
           L +  Q+  +   + +++    E     ++L ++ E E  ++    +LE    E E   +
Sbjct: 612 LEELLQSLELSEAENELEEAEEELESELEKLNLQAELEELLQAALEELEEKVEELEAEIR 671

Query: 832 LELQKKKKEEEKKKKLADMA------ARKRQREEEERKEKERKRKRVMESRRQQQEHEEK 885
            ELQ+ + EE+ ++KL ++        + R+  EE  K+     + + E   ++ E EE 
Sbjct: 672 RELQRIENEEQLEEKLEELEQLEEELEQLREELEELLKKLGEIEQLIEELESRKAELEEL 731

Query: 886 LRAKKEEERKKKEADLL 902
            +  ++ E+  +  + L
Sbjct: 732 KKELEKLEKALELLEEL 748

Length = 908

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 44.3 bits (105), Expect = 3e-04
 Identities = 30/155 (19%), Positives = 68/155 (43%), Gaps = 6/155 (3%)

Query: 785 KRDVKVKALEAAEAAKRLAVEKENERKMKKEALKLERAKLEQENLKQLELQKKKKEEEKK 844
           +  +K K  E  E  + +        ++++E  KLE+   E E LK+   + +K+ E  +
Sbjct: 192 EELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELEKELESLE 251

Query: 845 KKLADMAARKRQREE------EERKEKERKRKRVMESRRQQQEHEEKLRAKKEEERKKKE 898
                +  + R+ EE      +E +E E K K + E + + +E+ +     +E   + +E
Sbjct: 252 GSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIKLSEFYEEYLDELRE 311

Query: 899 ADLLMVSKDETWRDYKRVKDQGEENPAKMKKTESK 933
            +  +   +E     +    + EE   ++++ + K
Sbjct: 312 IEKRLSRLEEEINGIEERIKELEEKEERLEELKKK 346

Length = 880

>gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3

 Score = 44.5 bits (105), Expect = 3e-04
 Identities = 39/235 (16%), Positives = 89/235 (37%), Gaps = 9/235 (3%)

Query: 790  VKALEAAEAAKRLAVEKENERKMKKEALKLERAKLEQENLKQLELQKKKKEEEKKKKLAD 849
               L + EA KR+          K +  K  + +  +E  K+ E  K++K+++K+K   +
Sbjct: 68   ESKLSSDEAVKRVEKGGSKGPAAKTKPAKEPKNESGKEEEKEKEQVKEEKKKKKEKPKEE 127

Query: 850  MAARKRQREEEE---RKEKERKRKRVMESRRQQQEHEEKLRAKKEEERKKKEADLLMVSK 906
               RK + E +E    KEKE+++++ +E  R ++E +++ R + +   KK         K
Sbjct: 128  PKDRKPKEEAKEKRPPKEKEKEKEKKVEEPRDREEEKKRERVRAKSRPKKPP------KK 181

Query: 907  DETWRDYKRVKDQGEENPAKMKKTESKATVVSTSDARETSIVLQVSEPSTDCGDKSKATG 966
                +  +  +++ +   A+              +  +     +  E +T   ++ ++  
Sbjct: 182  KPPNKKKEPPEEEKQRQAAREAVKGKPEEPDVNEEREKEEDDGKDRETTTSPMEEDESRQ 241

Query: 967  HLEKATENDLVTNQNQEPSYDISPYKDSDNEEEEDDDDRLNTKFIPSWASKRASA 1021
              E +  +     +        SP     ++  E              AS R + 
Sbjct: 242  SSEISRRSSSSLKKPDPSPSMASPETRESSKRTETRPRTSLRPPSARPASARPAP 296

This protein, which interacts with both microtubules and TRAF3 (tumour necrosis factor receptor-associated factor 3), is conserved from worms to humans. The N-terminal region is the microtubule binding domain and is well-conserved; the C-terminal 100 residues, also well-conserved, constitute the coiled-coil region which binds to TRAF3. The central region of the protein is rich in lysine and glutamic acid and carries KKE motifs which may also be necessary for tubulin-binding, but this region is the least well-conserved. Length = 506

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 44.7 bits (106), Expect = 3e-04
 Identities = 26/129 (20%), Positives = 53/129 (41%), Gaps = 3/129 (2%)

Query: 794 EAAEAAKRLAVEKENERKMKKEALKLERAKLEQENLKQLELQKKKKEEEKKKKLADMAAR 853
           E  E  +++   +E   +++K    L   + E E L++   Q +K+ EE  ++++ +   
Sbjct: 678 EIEELEEKIEELEEKIAELEKA---LAELRKELEELEEELEQLRKELEELSRQISALRKD 734

Query: 854 KRQREEEERKEKERKRKRVMESRRQQQEHEEKLRAKKEEERKKKEADLLMVSKDETWRDY 913
             + E E  + +ER  +   E    + E EE     +E E +  EA+  +   +      
Sbjct: 735 LARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQL 794

Query: 914 KRVKDQGEE 922
           K       E
Sbjct: 795 KEELKALRE 803

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584)

 Score = 44.7 bits (106), Expect = 3e-04
 Identities = 26/126 (20%), Positives = 51/126 (40%), Gaps = 9/126 (7%)

Query: 774 QQKQAAAIITGKRDVKVKALEAAEAAK----RLAVEKENERKMKKEALKLERAKLEQENL 829
           Q  QA A +  ++  + +A  A + A+    RL  E+++ +   + A+  ER +  +  L
Sbjct: 629 QLVQANAELEEQKRAEAEARTALKQARLDLQRLQNEQQSLKDKLELAIA-ERKQQAETQL 687

Query: 830 KQLELQKKKKEEEKKKKLADMAARKRQREEEERKEKERKRKRVMESRRQQQEHEEKLRAK 889
           +QL+ Q K+  E+++          +    E R E+  K + V      Q          
Sbjct: 688 RQLDAQLKQLLEQQQ----AFLEALKDDFRELRTERLAKWQVVEGELDNQLAQLSAAIEA 743

Query: 890 KEEERK 895
              + K
Sbjct: 744 ARTQAK 749

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication. Length = 1198

>gnl|CDD|218684 pfam05672, MAP7, MAP7 (E-MAP-115) family

 Score = 42.4 bits (99), Expect = 3e-04
 Identities = 33/126 (26%), Positives = 64/126 (50%), Gaps = 1/126 (0%)

Query: 777 QAAAIITGKRDVKVKALEAAEAAKRLAVEKEN-ERKMKKEALKLERAKLEQENLKQLELQ 835
           +A  ++  KR    +  E  E  +R   E++  ER+  K     ER + E+E  +Q E +
Sbjct: 23  EATRLLAEKRRQAREQREQEEQERREQEEQDRLEREELKRRAAEERLRREEEARRQEEER 82

Query: 836 KKKKEEEKKKKLADMAARKRQREEEERKEKERKRKRVMESRRQQQEHEEKLRAKKEEERK 895
            ++KEE+ K+K  +   ++++ +E  +K+KE    R  E   + +   EK   + E+ER 
Sbjct: 83  AREKEEKAKRKAEEEEKQEQEEQERIQKQKEEAEARAREEAERMRLEREKHFQQIEQERL 142

Query: 896 KKEADL 901
           +++  L
Sbjct: 143 ERKKRL 148

The organisation of microtubules varies with the cell type and is presumably controlled by tissue-specific microtubule-associated proteins (MAPs). The 115-kDa epithelial MAP (E-MAP-115/MAP7) has been identified as a microtubule-stabilising protein predominantly expressed in cell lines of epithelial origin. The binding of this microtubule associated protein is nucleotide independent. Length = 171

>gnl|CDD|226889 COG4487, COG4487, Uncharacterized protein conserved in bacteria [Function unknown]

 Score = 44.0 bits (104), Expect = 3e-04
 Identities = 31/177 (17%), Positives = 69/177 (38%), Gaps = 2/177 (1%)

Query: 759 HNNIVSNITSFIPLVQQKQAAAIITGKRDVKVKALEAAEAAKRLAVEKENERKMKKEALK 818
            + I++ +  F     +K+A      K+++     +     K        + K  + AL+
Sbjct: 37  QSRILNTLEEFEKEANEKRAQYRSAKKKELSQLEEQLINQKKEQKNLFNEQIKQFELALQ 96

Query: 819 LERAKLEQENLKQLELQKKKKEEEKK-KKLADMAARKRQRE-EEERKEKERKRKRVMESR 876
            E AKLE   L  LE  K+ +  EK+  +L+    ++ Q   E   K++E  +       
Sbjct: 97  DEIAKLEALELLNLEKDKELELLEKELDELSKELQKQLQNTAEIIEKKRENNKNEERLKF 156

Query: 877 RQQQEHEEKLRAKKEEERKKKEADLLMVSKDETWRDYKRVKDQGEENPAKMKKTESK 933
             +++ EE L  ++E+  ++     L +   E     +      ++   + +    +
Sbjct: 157 ENEKKLEESLELEREKFEEQLHEANLDLEFKENEEQRESKWAILKKLKRRAELGSQQ 213

Length = 438

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 44.4 bits (104), Expect = 4e-04
 Identities = 42/193 (21%), Positives = 81/193 (41%), Gaps = 14/193 (7%)

Query: 791  KALEAAEAAKRLAVEKENERKMKKEALKLERAKLEQEN----------LKQLELQKKKKE 840
            +A +A E  K   ++K  E K  +E  K E AK  +E+           K+ E  + ++ 
Sbjct: 1538 EAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEV 1597

Query: 841  EEKKKKLADMAARKRQREEEERKEKERKRKRVMESRRQQQEHEEKLRAKKEEERKKKEAD 900
             +  ++   M A + ++ EE + + E  +K   E ++ +Q  +++   KK+ E  KK  +
Sbjct: 1598 MKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEE 1657

Query: 901  LLMVSKDETWRDYKRVKDQGEENPAKMKKTESKATVVSTSDARETSIVLQVSEPSTDCGD 960
               +   E  +  +  K + EE     KK E      + +  +E     +  E      +
Sbjct: 1658 ENKIKAAEEAKKAEEDKKKAEE----AKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAE 1713

Query: 961  KSKATGHLEKATE 973
            + K    L+KA E
Sbjct: 1714 EKKKAEELKKAEE 1726

Length = 2084

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 44.4 bits (104), Expect = 4e-04
 Identities = 41/165 (24%), Positives = 76/165 (46%), Gaps = 6/165 (3%)

Query: 774  QQKQAAAIITGKRDVKVKALEAAEAAKRLAVEKENERKMKKEALKLERAKLEQENLKQLE 833
            + K+A      +   K +    A  A+R A  K  E +   E  K E  K + +  K+ E
Sbjct: 1241 EAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKK-KADEAKKAE 1299

Query: 834  LQKKKKEEEKKKKLADMAARKRQREEEERKEKERKRKRVMESRRQQQEHEEKLRAKKEE- 892
             +KK  E +KK + A  A   +++ EE +K+ +  +K+  E+++  +  + +  A  +E 
Sbjct: 1300 EKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEA 1359

Query: 893  ERKKKEADLLMVSKDETWRDYKRVKDQGEE----NPAKMKKTESK 933
            E  +++A+     K+E  +     K + EE    + AK K  E K
Sbjct: 1360 EAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDK 1404

Length = 2084

>gnl|CDD|219655 pfam07946, DUF1682, Protein of unknown function (DUF1682)

 Score = 43.4 bits (103), Expect = 4e-04
 Identities = 28/79 (35%), Positives = 49/79 (62%), Gaps = 4/79 (5%)

Query: 818 KLERAKLEQENLKQLELQKKKKEEEKKKKLADMAAR-KRQREEEERKEKERKRKRVMESR 876
           KL   KL  E L++++ + +++EEEK  K A+   + + Q ++EE+K++ER+ K    S 
Sbjct: 247 KLANLKLSPEVLRKVD-KTREEEEEKILKAAEEERQEEAQEKKEEKKKEEREAKLAKLSP 305

Query: 877 RQQQEHEEKLRAKKEEERK 895
            +Q++ EEK R K  + RK
Sbjct: 306 EEQRKLEEKERKK--QARK 322

The members of this family are all hypothetical eukaryotic proteins of unknown function. One member is described as being an adipocyte-specific protein, but no evidence of this was found. Length = 322

>gnl|CDD|236081 PRK07735, PRK07735, NADH dehydrogenase subunit C; Validated

 Score = 43.8 bits (103), Expect = 4e-04
 Identities = 50/201 (24%), Positives = 81/201 (40%), Gaps = 36/201 (17%)

Query: 794 EAAEAAKRLAVEKENERKMKKEALKLERAKLEQENLKQ-----------LELQKKKKEEE 842
           EAA  AK  A     +R + K     E +KLE+EN ++           +E  K++    
Sbjct: 13  EAARRAKEEA----RKRLVAKHGA--EISKLEEENREKEKALPKNDDMTIEEAKRRAAAA 66

Query: 843 KKKKLADMAARKRQREE---EERKEKERK------RKRVMESRRQQQE------HEEKLR 887
            K K A +A +KR+  E   EE K K +       + +     +Q++E       EEK  
Sbjct: 67  AKAKAAALAKQKREGTEEVTEEEKAKAKAKAAAAAKAKAAALAKQKREGTEEVTEEEKAA 126

Query: 888 AK-KEEERKKKEADLLMVSKDETWRDYKRVKDQGEENPAKMKK---TESKATVVSTSDAR 943
           AK K     K +A  L   K E   +    +++ ++  AK K     ++KA  ++   A 
Sbjct: 127 AKAKAAAAAKAKAAALAKQKREGTEEVTEEEEETDKEKAKAKAAAAAKAKAAALAKQKAA 186

Query: 944 ETSIVLQVSEPSTDCGDKSKA 964
           E     +          K+KA
Sbjct: 187 EAGEGTEEVTEEEKAKAKAKA 207

Length = 430

>gnl|CDD|202427 pfam02841, GBP_C, Guanylate-binding protein, C-terminal domain

 Score = 43.0 bits (102), Expect = 5e-04
 Identities = 31/91 (34%), Positives = 47/91 (51%), Gaps = 11/91 (12%)

Query: 787 DVKVKALEAAEAAKRLAVEKENERKMKKEALKLERAKLEQENLKQLELQKKKKEEEKKKK 846
             + KA EAAEA + L  EK+ E +   EA +    +  QE++KQL    +K E E++K 
Sbjct: 208 AERAKA-EAAEAEQELLREKQKEEEQMMEAQE----RSYQEHVKQL---IEKMEAEREKL 259

Query: 847 LAD---MAARKRQREEEERKEKERKRKRVME 874
           LA+   M   K Q +EE  KE  +     ++
Sbjct: 260 LAEQERMLEHKLQEQEELLKEGFKTEAESLQ 290

Transcription of the anti-viral guanylate-binding protein (GBP) is induced by interferon-gamma during macrophage induction. This family contains GBP1 and GPB2, both GTPases capable of binding GTP, GDP and GMP. Length = 297

>gnl|CDD|225381 COG2825, HlpA, Outer membrane protein [Cell envelope biogenesis, outer membrane]

 Score = 41.2 bits (97), Expect = 6e-04
 Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 2/81 (2%)

Query: 818 KLERAKLEQE-NLKQLELQKKKKE-EEKKKKLADMAARKRQREEEERKEKERKRKRVMES 875
           K   A LE E   +Q ELQK +KE + K+ KL D    +   +  + + + +K K V   
Sbjct: 43  KKVSADLESEFKKRQKELQKMQKELKAKEAKLQDDGKMEALSDRAKAEAEIKKEKLVNAF 102

Query: 876 RRQQQEHEEKLRAKKEEERKK 896
            ++QQE+E+ L  ++ EE +K
Sbjct: 103 NKKQQEYEKDLNRREAEEEQK 123

Length = 170

>gnl|CDD|214922 smart00935, OmpH, Outer membrane protein (OmpH-like)

 Score = 40.6 bits (96), Expect = 6e-04
 Identities = 24/83 (28%), Positives = 50/83 (60%), Gaps = 2/83 (2%)

Query: 815 EALKLERAKLEQENLKQLELQKKKKEEEKKKKLADMAARKRQREEEERKEKERK-RKRVM 873
            A K  + +LE+E  K+ + + +K E+E +K    +        E  R++KE++ +K+V 
Sbjct: 14  PAGKAAQKQLEKEF-KKRQAELEKLEKELQKLKEKLQKDAATLSEAAREKKEKELQKKVQ 72

Query: 874 ESRRQQQEHEEKLRAKKEEERKK 896
           E +R+QQ+ ++ L+ +++EE +K
Sbjct: 73  EFQRKQQKLQQDLQKRQQEELQK 95

This family includes outer membrane proteins such as OmpH among others. Skp (OmpH) has been characterized as a molecular chaperone that interacts with unfolded proteins as they emerge in the periplasm from the Sec translocation machinery. Length = 140

>gnl|CDD|202427 pfam02841, GBP_C, Guanylate-binding protein, C-terminal domain

 Score = 42.7 bits (101), Expect = 7e-04
 Identities = 26/105 (24%), Positives = 56/105 (53%), Gaps = 12/105 (11%)

Query: 830 KQLELQKKKKEEEKKKKLADMAARK--RQREEEERKEKERKRKRVMESR-RQQQEHEEKL 886
           + L  ++K  E E+ K  A  A ++  R++++EE        +++ME++ R  QEH ++L
Sbjct: 197 QALTAKEKAIEAERAKAEAAEAEQELLREKQKEE--------EQMMEAQERSYQEHVKQL 248

Query: 887 RAKKEEERKKKEADLLMVSKDETWRDYKRVKDQGEENPAKMKKTE 931
             K E ER+K  A+   + + +  ++ + +  +G +  A+  + E
Sbjct: 249 IEKMEAEREKLLAEQERMLEHKL-QEQEELLKEGFKTEAESLQKE 292

Transcription of the anti-viral guanylate-binding protein (GBP) is induced by interferon-gamma during macrophage induction. This family contains GBP1 and GPB2, both GTPases capable of binding GTP, GDP and GMP. Length = 297

>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional

 Score = 43.5 bits (103), Expect = 7e-04
 Identities = 29/103 (28%), Positives = 47/103 (45%), Gaps = 10/103 (9%)

Query: 804 VEKENERKMKKEALKLERAKLEQENLKQLELQKKKKEEEKKKKLADMAARKRQREE---- 859
           VE   E + + E L+ E   LE+E     E++++ +  E   +  D   R  +R E    
Sbjct: 467 VETIEEDRERVEELEAELEDLEEE---VEEVEERLERAEDLVEAEDRIERLEERREDLEE 523

Query: 860 --EERKEK-ERKRKRVMESRRQQQEHEEKLRAKKEEERKKKEA 899
              ER+E  E KR+R  E R +  E E +   K+E   + +E 
Sbjct: 524 LIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEE 566

Length = 880

>gnl|CDD|201540 pfam00992, Troponin, Troponin

 Score = 40.2 bits (95), Expect = 7e-04
 Identities = 24/88 (27%), Positives = 44/88 (50%), Gaps = 4/88 (4%)

Query: 818 KLERAKLEQENLKQLELQKKKKEEEKKKKLAD-MAARKRQREEEERK---EKERKRKRVM 873
           +  ++ L  +  ++LE +++KKEEEK+K LA+     +      E +   +K   R   +
Sbjct: 2   RHLKSLLLLKAAEELEFEQRKKEEEKEKYLAERCPPLRLSLSRAELQELCKKLHARIDRL 61

Query: 874 ESRRQQQEHEEKLRAKKEEERKKKEADL 901
           +  R   E +   + K+ E+ KKK  DL
Sbjct: 62  DEERYDIEEKVAKKDKEIEDLKKKVNDL 89

Troponin (Tn) contains three subunits, Ca2+ binding (TnC), inhibitory (TnI), and tropomyosin binding (TnT). this Pfam contains members of the TnT subunit. Troponin is a complex of three proteins, Ca2+ binding (TnC), inhibitory (TnI), and tropomyosin binding (TnT). The troponin complex regulates Ca++ induced muscle contraction. This family includes troponin T and troponin I. Troponin I binds to actin and troponin T binds to tropomyosin. Length = 131

>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional

 Score = 43.0 bits (102), Expect = 7e-04
 Identities = 22/85 (25%), Positives = 44/85 (51%), Gaps = 5/85 (5%)

Query: 824 LEQENLKQLELQKKKKEEEKKKKLADMAARKRQREEEERKEKERKRKRVMESRRQQQEHE 883
           L +E ++ L   KK       KK+  +  +  ++ EEE+KEK++K     +   +++E +
Sbjct: 394 LTEEEIEFLTGSKKAT-----KKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEK 448

Query: 884 EKLRAKKEEERKKKEADLLMVSKDE 908
           EK   +KEEE ++ E +     + +
Sbjct: 449 EKKEEEKEEEEEEAEEEKEEEEEKK 473

Length = 482

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 43.2 bits (102), Expect = 8e-04
 Identities = 29/145 (20%), Positives = 60/145 (41%), Gaps = 20/145 (13%)

Query: 782 ITGKRDVKVKALEAAEAAKRLAVEKENERKMKKEALKLERAKLEQENLK----QLELQKK 837
           +  + +   + L   E       E+  E + + E LK E  +L +E  +     LEL+++
Sbjct: 237 LRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEE 296

Query: 838 KKEEEKKKKLADMAARKRQREEEERKEKERKRKRVMESRRQQQEHEEKLRAKKEEERKKK 897
            +E E +  L      + + E EE +E+  + K  +E+ +++ E  E L  + E+     
Sbjct: 297 IEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLA-- 354

Query: 898 EADLLMVSKDETWRDYKRVKDQGEE 922
                         + +  K++ EE
Sbjct: 355 --------------ELEEAKEELEE 365

Length = 1163

>gnl|CDD|225177 COG2268, COG2268, Uncharacterized protein conserved in bacteria [Function unknown]

 Score = 42.9 bits (101), Expect = 9e-04
 Identities = 31/166 (18%), Positives = 66/166 (39%), Gaps = 9/166 (5%)

Query: 770 IPLVQQKQAAAIITGKRDVKVKALEAAEAAKRLAVEKENERKMKKEALKLERAKLEQENL 829
           I L + +   A    +   +      AE A+ LA +   E K + E        LE   +
Sbjct: 269 IILAETEAEVAAWKAETRRE------AEQAEILAEQAIQEEKAQAEQEVQHAKALEAREM 322

Query: 830 KQLELQKKKKEEEKKKKLADMAARKRQREEEERKEKERKRKRVMESRRQQQEHEEKLRAK 889
           +   ++++K+ E + ++ +      +++ +EE K      + +     Q +   E  R  
Sbjct: 323 RVGLIERQKETELEPQERSYFINAAQRQAQEEAKAAANIAEAI---GAQAEAAVETARET 379

Query: 890 KEEERKKKEADLLMVSKDETWRDYKRVKDQGEENPAKMKKTESKAT 935
           +E ER ++ A +      E  +    V+ +  +  A+ +  E KA 
Sbjct: 380 EEAERAEQAALVAAAEAAEQEQVEIAVRAEAAKAEAEAQAAEIKAE 425

Length = 548

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 42.4 bits (99), Expect = 0.001
 Identities = 32/142 (22%), Positives = 69/142 (48%), Gaps = 1/142 (0%)

Query: 792  ALEAAEAAKRLAVEKENERKMKKEALKLERAKLEQENLKQLELQKKKKEEEKKKKLADMA 851
            A +A  A K   V K  E +  ++A K E A+ + E  ++ E  +K ++ +K + +    
Sbjct: 1175 AKKAEAARKAEEVRKAEELRKAEDARKAEAAR-KAEEERKAEEARKAEDAKKAEAVKKAE 1233

Query: 852  ARKRQREEEERKEKERKRKRVMESRRQQQEHEEKLRAKKEEERKKKEADLLMVSKDETWR 911
              K+  EE ++ E+ER  + + +    +  H  + +A  + E  +K  +L    + +   
Sbjct: 1234 EAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKAD 1293

Query: 912  DYKRVKDQGEENPAKMKKTESK 933
            + K+ +++ + + AK K  E+K
Sbjct: 1294 EAKKAEEKKKADEAKKKAEEAK 1315

Length = 2084

>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional

 Score = 42.7 bits (101), Expect = 0.001
 Identities = 31/117 (26%), Positives = 54/117 (46%), Gaps = 13/117 (11%)

Query: 783 TGKRDVKVKALEAAEAAKRLAVEKENERKMKKEALKLERAKLEQENLKQLELQKKKKEEE 842
             +   +V+ LEA        VE+  ER        LERA+   E   ++E     + EE
Sbjct: 470 IEEDRERVEELEAELEDLEEEVEEVEER--------LERAEDLVEAEDRIE-----RLEE 516

Query: 843 KKKKLADMAARKRQREEEERKEKERKRKRVMESRRQQQEHEEKLRAKKEEERKKKEA 899
           +++ L ++ A +R+  EE+R+  E  R+R  E   + +E  E     +EE  + +E 
Sbjct: 517 RREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREE 573

Length = 880

>gnl|CDD|240271 PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional

 Score = 43.1 bits (102), Expect = 0.001
 Identities = 42/243 (17%), Positives = 85/243 (34%), Gaps = 24/243 (9%)

Query: 785  KRDVKVKALEAAEAAKRLAVEKENERKMKKEALKLERAKLEQENLKQLELQKKKKEEEKK 844
              D+  K  EA E  + +  ++  + +  K   K + +KL +  LK+ E +KKK   +K 
Sbjct: 1131 LEDLD-KFEEALEEQEEVEEKEIAKEQRLKSKTKGKASKLRKPKLKKKEKKKKKSSADKS 1189

Query: 845  KKLADMAARKRQREEEERKEKERKRKRVMESRRQQQEHEEKLRAKKEEERKKKEADLLMV 904
            KK + +   KR   +E+RK  ++   +   S    QE +E+ + K ++   K+       
Sbjct: 1190 KKASVVGNSKRVDSDEKRKLDDKPDNKKSNSSGSDQEDDEEQKTKPKKSSVKRLKSKKNN 1249

Query: 905  SKDETWRDYKRVKDQGEENPAKMKKTESKATVV------STSDARETSIVLQVSEPSTDC 958
            S   +  + +   D   +        +  + V       S     E++   + S P+   
Sbjct: 1250 SSKSSEDNDEFSSDDLSKEGKPKNAPKRVSAVQYSPPPPSKRPDGESNGGSKPSSPTKKK 1309

Query: 959  GDKSKATGHLEKATEN-----------------DLVTNQNQEPSYDISPYKDSDNEEEED 1001
              K           +                      +Q+          K   + E++D
Sbjct: 1310 VKKRLEGSLAALKKKKKSEKKTARKKKSKTRVKQASASQSSRLLRRPRKKKSDSSSEDDD 1369

Query: 1002 DDD 1004
            D +
Sbjct: 1370 DSE 1372

Length = 1388

>gnl|CDD|218177 pfam04615, Utp14, Utp14 protein

 Score = 42.7 bits (101), Expect = 0.001
 Identities = 36/212 (16%), Positives = 88/212 (41%), Gaps = 19/212 (8%)

Query: 791  KALEAAEAAKRLAVEKENERKMKKEALKLERAKLEQENLKQLELQKKKKE--EEKKKKLA 848
            K ++ AEA K+         ++++E L+ E    E+EN +  +    +++   E  +K A
Sbjct: 377  KFMQRAEARKK-EENDAEIEELRRE-LEGEEESDEEENEEPSKKNVGRRKFGPENGEKEA 434

Query: 849  DMAARKRQREEEERKEKERKRKRVMESRRQQQEHEEKLRAKKEEERKKKEADLLMVSKDE 908
            +    K++ + E +++KE   +  +E   + +  +   +  K  E+ +KE +   + ++ 
Sbjct: 435  ESKKLKKENKNEFKEKKESDEEEELEDEEEAKVEKVANKLLKRSEKAQKEEEEEELDEEN 494

Query: 909  TWRDYKRVKDQGEENPAKMKKTESKATVVSTSDARETSIVLQVSEPSTDCGDKSKATGHL 968
             W   K     G+    +  K +S + +   ++    + V    +       K + +  L
Sbjct: 495  PWL--KTTSSVGKSAKKQDSKKKSSSKLDKAANKISKAAVKVKKK------KKKEKSIDL 546

Query: 969  EKATENDLVTNQNQEPSYDISPYKDSDNEEEE 1000
            +    ++       E S  +    + D ++EE
Sbjct: 547  DDDLIDE-------EDSIKLDVDDEEDEDDEE 571

This protein is found to be part of a large ribonucleoprotein complex containing the U3 snoRNA. Depletion of the Utp proteins impedes production of the 18S rRNA, indicating that they are part of the active pre-rRNA processing complex. This large RNP complex has been termed the small subunit (SSU) processome. Length = 728

>gnl|CDD|218177 pfam04615, Utp14, Utp14 protein

 Score = 42.4 bits (100), Expect = 0.001
 Identities = 37/208 (17%), Positives = 80/208 (38%), Gaps = 11/208 (5%)

Query: 805  EKENERKMKKEALKLERAKLEQENLKQLELQKKKKEEEKKKKLADMAARKRQRE----EE 860
            + EN   ++K+  KL+  + ++EN   L ++  ++ E +KK+  D    + +RE    EE
Sbjct: 347  DGENPWMLRKKLGKLKEGEDDEENSGLLSMKFMQRAEARKKEENDAEIEELRRELEGEEE 406

Query: 861  ERKEKERKRKRVMESRRQ--QQEHEEKLRAKKEEERKKKEADLLMVSKDETWRDYKRVKD 918
              +E+  +  +    RR+   +  E++  +KK ++  K E      S +E   + +    
Sbjct: 407  SDEEENEEPSKKNVGRRKFGPENGEKEAESKKLKKENKNEFKEKKESDEEEELEDEEEAK 466

Query: 919  QGEENPAKMKKTESKATVVSTSDARETSIVLQVSEPSTDCGDKSKATGHLEKATENDLVT 978
              +     +K++E         +  E +  L+ +           A     K   +  + 
Sbjct: 467  VEKVANKLLKRSEKAQKEEEEEELDEENPWLKTTSS-----VGKSAKKQDSKKKSSSKLD 521

Query: 979  NQNQEPSYDISPYKDSDNEEEEDDDDRL 1006
                + S      K    +E+  D D  
Sbjct: 522  KAANKISKAAVKVKKKKKKEKSIDLDDD 549

This protein is found to be part of a large ribonucleoprotein complex containing the U3 snoRNA. Depletion of the Utp proteins impedes production of the 18S rRNA, indicating that they are part of the active pre-rRNA processing complex. This large RNP complex has been termed the small subunit (SSU) processome. Length = 728

>gnl|CDD|178945 PRK00247, PRK00247, putative inner membrane protein translocase component YidC; Validated

 Score = 42.1 bits (99), Expect = 0.001
 Identities = 29/156 (18%), Positives = 62/156 (39%), Gaps = 27/156 (17%)

Query: 791 KALEAAEAAKRLAVEKENERKMKKEALKLER----------AKLEQENLKQLELQKKKKE 840
           K   A + A+    EK+ E+K     L+  R           +L  EN    E++K +  
Sbjct: 284 KEHHAEQRAQY--REKQKEKKAFLWTLRRNRLRMIITPWRAPELHAENA---EIKKTRTA 338

Query: 841 EEKKKKLADMAARKRQREEEERKEKERKRKRVMESRRQQQEHEEKLRAKKEEERKKKEAD 900
           E+ + K        ++   ++R+  ER+  R  E+R+++     + RA++   + KK+  
Sbjct: 339 EKNEAKAR------KKEIAQKRRAAEREINR--EARQERAAAMARARARRAAVKAKKKGL 390

Query: 901 LLMVSKDETWRDYKR----VKDQGEENPAKMKKTES 932
           +     ++T  + +              A+  +  S
Sbjct: 391 IDASPNEDTPSENEESKGSPPQVEATTTAEPNREPS 426

Length = 429

>gnl|CDD|218896 pfam06098, Radial_spoke_3, Radial spoke protein 3

 Score = 41.6 bits (98), Expect = 0.001
 Identities = 21/74 (28%), Positives = 47/74 (63%), Gaps = 2/74 (2%)

Query: 819 LERAKLEQENLKQLELQKKKKEEEKKKKLADMAARKRQREEEERKEKERKRKRVMESRRQ 878
           LE+A LE    ++L   ++++ + ++++ A++A  +R  E E R+ +E++R++  +  R+
Sbjct: 141 LEQALLEVLEEEELAELRQQQRQFEQRRNAELAETQRLEEAERRRREEKERRKKQDKERK 200

Query: 879 QQEHE--EKLRAKK 890
           Q+E E  EK+ A+ 
Sbjct: 201 QREKETAEKIAARA 214

This family consists of several radial spoke protein 3 (RSP3) sequences. Eukaryotic cilia and flagella present in diverse types of cells perform motile, sensory, and developmental functions in organisms from protists to humans. They are centred by precisely organised, microtubule-based structures, the axonemes. The axoneme consists of two central singlet microtubules, called the central pair, and nine outer doublet microtubules. These structures are well-conserved during evolution. The outer doublet microtubules, each composed of A and B sub-fibres, are connected to each other by nexin links, while the central pair is held at the centre of the axoneme by radial spokes. The radial spokes are T-shaped structures extending from the A-tubule of each outer doublet microtubule to the centre of the axoneme. Radial spoke protein 3 (RSP3), is present at the proximal end of the spoke stalk and helps in anchoring the radial spoke to the outer doublet. It is thought that radial spokes regulate the activity of inner arm dynein through protein phosphorylation and dephosphorylation. Length = 288

>gnl|CDD|220369 pfam09731, Mitofilin, Mitochondrial inner membrane protein

 Score = 41.9 bits (99), Expect = 0.001
 Identities = 33/157 (21%), Positives = 73/157 (46%), Gaps = 19/157 (12%)

Query: 750 PSFADRESKHNNIVSNITSFIPLVQQKQAAAIITGKRDVKVKALEAAEAAKRLAVEKENE 809
           P   +  S  N+++ +I        +    ++I      ++  L    A  +   E+E E
Sbjct: 136 PVVQELVSIFNDLIDSIKE---DNLKDDLESLI-ASAKEELDQLSKKLAELKAEEEEELE 191

Query: 810 RKMKKEALKLERAKLEQENLKQLELQKKKKEEEKKKKLADMAARKRQREE-EERKEKERK 868
           R +K++  +L   KLE+E L +LE ++   E++ + +      ++  R++ EE+  +E +
Sbjct: 192 RALKEKREELLS-KLEEELLARLESKEAALEKQLRLEFE--REKEELRKKYEEKLRQELE 248

Query: 869 RKR-----------VMESRRQQQEHEEKLRAKKEEER 894
           R+             +++   Q+E  ++++ K EEER
Sbjct: 249 RQAEAHEQKLKNELALQAIELQREFNKEIKEKVEEER 285

Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence rich in positive-charged and hydroxylated residues and a membrane anchor domain. In addition, it has three centrally located coiled coil domains. Length = 493

>gnl|CDD|218336 pfam04935, SURF6, Surfeit locus protein 6

 Score = 40.8 bits (96), Expect = 0.001
 Identities = 38/123 (30%), Positives = 65/123 (52%), Gaps = 20/123 (16%)

Query: 784 GKRDVKVKALEAAEA-AKRLAVEKENERKMKKEALKLERAKLEQENLKQLE----LQKKK 838
            K D K + L+  EA  K+L    E++    +E  K  +A  + E +K  +    L+K  
Sbjct: 90  KKTDYK-QLLKKLEARKKKLEELDEDKAAEIEEKEKWTKALAKAEGVKVKDDEKLLKKAL 148

Query: 839 KEEEKKKKLADMAARKRQREEEERKEKERKRKRVMESRRQQQEHEEKLRAKKEE--ERKK 896
           K +EK+K       +K ++E +ERKEK  K+K       +Q++ EE L+ +K++   +KK
Sbjct: 149 KRKEKQK-------KKSKKEWKERKEKVEKKKA-----ERQKKREENLKKRKDDKKNKKK 196

Query: 897 KEA 899
           K+A
Sbjct: 197 KKA 199

The surfeit locus protein SURF-6 is shown to be a component of the nucleolar matrix and has a strong binding capacity for nucleic acids. Length = 206

>gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]

 Score = 41.1 bits (96), Expect = 0.002
 Identities = 33/129 (25%), Positives = 57/129 (44%), Gaps = 15/129 (11%)

Query: 821 RAKLEQENLKQLELQKKKKE----EEKKKKLADMAARKRQREEEERKEKERKR------K 870
           R + +Q + K+ E Q+KKKE    EE K K A    R +Q E+E  K +E+++      K
Sbjct: 66  RIQSQQSSAKKGEQQRKKKEEQVAEELKPKQAAEQERLKQLEKERLKAQEQQKQAEEAEK 125

Query: 871 RVMESRRQQQEHEEKLRAKK-----EEERKKKEADLLMVSKDETWRDYKRVKDQGEENPA 925
           +    ++QQ+E   K  A++       + K       + +  E  +  +      EE  A
Sbjct: 126 QAQLEQKQQEEQARKAAAEQKKKAEAAKAKAAAEAAKLKAAAEAKKKAEEAAKAAEEAKA 185

Query: 926 KMKKTESKA 934
           K +   +K 
Sbjct: 186 KAEAAAAKK 194

Length = 387

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 42.4 bits (100), Expect = 0.002
 Identities = 31/167 (18%), Positives = 72/167 (43%), Gaps = 25/167 (14%)

Query: 794 EAAEAAKRLAVEKENERKMKKEALKLERAKLEQE----NLKQLELQK------KKKEEEK 843
           EAA  +K    ++E ERK+++    LER +   E     L++LE Q       ++ + E 
Sbjct: 163 EAAGVSKYKERKEEAERKLERTEENLERLEDLLEELEKQLEKLERQAEKAERYQELKAEL 222

Query: 844 KKKLADMAARK----RQREEEERKEKERKRKRVMESRRQQQEHEEKL------RAKKEEE 893
           ++    +   K    R+  EE  +E  R  + + E + + +E E+++        +  EE
Sbjct: 223 RELELALLLAKLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREE 282

Query: 894 RKKKEADLLMVSK-----DETWRDYKRVKDQGEENPAKMKKTESKAT 935
            ++ + +LL + +     +      +   ++ E    ++++   +  
Sbjct: 283 LEELQEELLELKEEIEELEGEISLLRERLEELENELEELEERLEELK 329

Length = 1163

>gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

 Score = 42.0 bits (99), Expect = 0.002
 Identities = 27/128 (21%), Positives = 51/128 (39%), Gaps = 23/128 (17%)

Query: 794 EAAEAAKRLAV---EKENERKMKKEALKLERAKL---------EQENLKQLELQKKKKE- 840
           E A+ + RLA+        R  + +ALK    +L         EQ  L  L  +++ ++ 
Sbjct: 140 EDAQRSVRLAIYYGALNPARAERIDALKATLKQLAAVRAEIAAEQAELTTLLSEQRAQQA 199

Query: 841 ------EEKKKKLADMAARK---RQREEEERKEKERKRKRVMESRRQ-QQEHEEKLRAKK 890
                 EE+KK LA + +     +++ EE R  + R +  +  +     +  E    A+ 
Sbjct: 200 KLAQLLEERKKTLAQLNSELSADQKKLEELRANESRLKNEIASAEAAAAKAREAAAAAEA 259

Query: 891 EEERKKKE 898
              R +  
Sbjct: 260 AAARARAA 267

Length = 420

>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain

 Score = 42.3 bits (99), Expect = 0.002
 Identities = 33/129 (25%), Positives = 65/129 (50%), Gaps = 3/129 (2%)

Query: 774 QQKQAAAIITGKRDVKVKALEAAEAAKRLAVEKENERKMKKEALKLERAK-LEQENLKQL 832
            +K+   +    ++ K +  E     + L +  + E ++K E LKLER K  ++E LK+ 
Sbjct: 261 LEKEEEILAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKES 320

Query: 833 ELQKKKKEEEKKKKLADMAARKRQREEEERKEKERKRKRVMESRRQQQEHEEKLRAKKEE 892
           E + KK E+E KK+  ++   +++ +E E K +  + +   E   + QE  E+L  +   
Sbjct: 321 EKELKKLEKELKKEKEEIEELEKELKELEIKREAEEEE--EEQLEKLQEKLEQLEEELLA 378

Query: 893 ERKKKEADL 901
           ++K +   L
Sbjct: 379 KKKLESERL 387

This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination. Length = 1162

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 42.0 bits (99), Expect = 0.002
 Identities = 31/121 (25%), Positives = 63/121 (52%), Gaps = 4/121 (3%)

Query: 782 ITGKRDVKVKALEAAEAAKRLAVEKENERKMKKEALKLERAKLEQENLKQLELQKKKKE- 840
           I  + +   K ++  E  + L  EKE E +     +    ++L +   +  +L+K+ KE 
Sbjct: 174 IKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKEL 233

Query: 841 EEKKKKLADMAARKRQREEEERKEKERKR---KRVMESRRQQQEHEEKLRAKKEEERKKK 897
           EE K+++ ++       E  +RK +E+ R   +R+ E +++ +E EEK++  KE + K +
Sbjct: 234 EELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAE 293

Query: 898 E 898
           E
Sbjct: 294 E 294

Length = 880

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 42.4 bits (100), Expect = 0.002
 Identities = 33/200 (16%), Positives = 71/200 (35%), Gaps = 8/200 (4%)

Query: 774 QQKQAAAIITGKRDVKVKALEAAEAAKRLAVEKENERKMKKEALKLERAKLEQENLKQLE 833
           + ++  A +        K LE  E       ++  E   +  AL+ + A+LE E ++QLE
Sbjct: 688 ELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAE-VEQLE 746

Query: 834 LQKKKKEEEKKKKLADMAARKRQREEEERKEKERKRKRVMESRRQQQEHEEKLRAKKEEE 893
            +  +  +E  +  A++   + + EE E +  E + +      + +Q  EE    ++  +
Sbjct: 747 ERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALD 806

Query: 894 RKKKEADLLMVSKDETWRDYKRVKDQGEENPAKMKKTESKATVVSTSDARE--TSIVLQV 951
             + E  LL            R + +  E      +   +       +  E   S+  ++
Sbjct: 807 ELRAELTLLNEEAAN-----LRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEI 861

Query: 952 SEPSTDCGDKSKATGHLEKA 971
            E      +       L   
Sbjct: 862 EELEELIEELESELEALLNE 881

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|220237 pfam09428, DUF2011, Fungal protein of unknown function (DUF2011)

 Score = 39.6 bits (93), Expect = 0.002
 Identities = 24/60 (40%), Positives = 37/60 (61%), Gaps = 5/60 (8%)

Query: 817 LKLERAKLEQENLKQLELQKKKKEEEKKKKLADMAARKRQREEEE-----RKEKERKRKR 871
           LK   AK+E+E L++ E +KK+K   KK+++A    R+R +E  E     RK +E+K KR
Sbjct: 64  LKKHNAKVEKELLREKEKKKKRKRPGKKRRIALRLRRERTKERAEKEKRTRKNREKKFKR 123

This is a family of fungal proteins whose function is unknown. Length = 130

>gnl|CDD|220365 pfam09726, Macoilin, Transmembrane protein

 Score = 41.8 bits (98), Expect = 0.002
 Identities = 73/342 (21%), Positives = 127/342 (37%), Gaps = 26/342 (7%)

Query: 587 EGISLEVASPVGELWDWKKSNSSSSDKQGSLN--PELPFISEEDENTDMVTGVHQGINLE 644
              S +  +   EL   + S  + S  + S +  PEL +  +  ++       H  I + 
Sbjct: 217 SEASSKGLTSTKELVPVQNSGGNHSLSKSSNSQTPELEYSEKGKDHHHSHNHQHHSIGIN 276

Query: 645 VMPSSVKREPLADITKNPNLTGSVPKTDVFAARSSLESVKTEFSFSRTVRAKQKHVEHIS 704
              S      L  I    N +     +      S      T  S S    A     +   
Sbjct: 277 NHHSKHADSKLQTIEVIENHSNKSRPSSSSTNGSKE---TTSNSSSAA--AGSIGSKSSK 331

Query: 705 NKKNRRQAKMSHGPSSFGENCINRVS---HNRFTKPKLSEKPSLRKGGPSFADRESKHNN 761
           + K+  + K +  P S      +  S    +  +K K + K S               N 
Sbjct: 332 SAKHSNRNKSNSSPKSHSSANGSVPSSSVSDNESKQKRASKSSSGARDSKKDASGMSANG 391

Query: 762 IVSNITSFIPLVQQKQAAAIITGKRDVKVKALEAAEAAKRLAVEKENERKMKKEALKLER 821
            V N    IP  +    +AI   ++D+K   L+A     R     +NE +++ +   L  
Sbjct: 392 TVENC---IPENKISTPSAIERLEQDIK--KLQAELQQAR-----QNESELRNQISLLTS 441

Query: 822 AKLEQENLKQLELQKKKKEEEKKKKLADMAARKRQREEEERKEKERKRKRVMESRR--QQ 879
               + +LK    Q KK+ +  + KL  M + K Q++++  +  E++ K   +SR   ++
Sbjct: 442 L---ERSLKSDLGQLKKENDMLQTKLNSMVSAK-QKDKQSMQSMEKRLKSEADSRVNAEK 497

Query: 880 QEHEEKLRAKKEEERKKKEADLLMVSKDETWRDYKRVKDQGE 921
           Q  EEK R K+EEE   + A     S++E     K+ K   E
Sbjct: 498 QLAEEKKRKKEEEETAARAAAQAAASREECAESLKQAKQDLE 539

This entry is a highly conserved protein present in eukaryotes. Length = 680

>gnl|CDD|204935 pfam12474, PKK, Polo kinase kinase

 Score = 39.2 bits (92), Expect = 0.002
 Identities = 27/105 (25%), Positives = 55/105 (52%), Gaps = 14/105 (13%)

Query: 792 ALEAAEAAKRLAVEKENERKMKKEALKLERAKLEQENLKQLELQKKKKEEEKKKKLADMA 851
             E     KR+  E++   KM KE+LK+E+ +L+QE     E   + +E+EK        
Sbjct: 47  TQELRRLPKRIRAEQKTRLKMFKESLKIEKKELKQEV----EKLPRFQEQEK-----KRM 97

Query: 852 ARKRQREEEERKEKERKRKRVMESRRQQQEHEEKLRAKKEEERKK 896
             +++ +E++ +++ER+        +Q++  EE L+  + E+R +
Sbjct: 98  KAEKEEQEQKHQKQEREFL-----AKQEENLEEALQQLQNEKRHE 137

This domain family is found in eukaryotes, and is approximately 140 amino acids in length. The family is found in association with pfam00069. Polo-like kinase 1 (Plx1) is essential during mitosis for the activation of Cdc25C, for spindle assembly, and for cyclin B degradation. This family is Polo kinase kinase (PKK) which phosphorylates Polo kinase and Polo-like kinase to activate them. PKK is a serine/threonine kinase. Length = 142

>gnl|CDD|191249 pfam05279, Asp-B-Hydro_N, Aspartyl beta-hydroxylase N-terminal region

 Score = 40.7 bits (95), Expect = 0.002
 Identities = 24/132 (18%), Positives = 52/132 (39%), Gaps = 5/132 (3%)

Query: 794 EAAEAAKRLAVEKENERKMKKEALKLERAKLEQENLK---QLELQKKKKEEEKKKKLADM 850
           + A    +  VE+E + +++    K+  +K E++      QL+  K    E+   +   +
Sbjct: 91  QLAVRKTKQKVEEEVKEQLQSLLEKIVVSKQEEDGPGKEPQLDEDKFLLAEDSDDRQETL 150

Query: 851 AARKRQREEEERKEKERKRKRVMESRRQQQEHEEKLRAKKEEERKKKEADLLMVSKDETW 910
            A K   E E+    E       +   +++  E++   +  +E  +K       + D T 
Sbjct: 151 EAGKVHEETEDSYHVEETASEQYKQDMKEKASEQE--NEDSKEPVEKAERTKAETDDVTE 208

Query: 911 RDYKRVKDQGEE 922
            DY    +  E+
Sbjct: 209 EDYDEEDNPVED 220

This family includes the N-terminal regions of the junctin, junctate and aspartyl beta-hydroxylase proteins. Junctate is an integral ER/SR membrane calcium binding protein, which comes from an alternatively spliced form of the same gene that generates aspartyl beta-hydroxylase and junctin. Aspartyl beta-hydroxylase catalyzes the post-translational hydroxylation of aspartic acid or asparagine residues contained within epidermal growth factor (EGF) domains of proteins. Length = 240

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 41.6 bits (98), Expect = 0.003
 Identities = 22/107 (20%), Positives = 50/107 (46%), Gaps = 3/107 (2%)

Query: 791 KALEAAEAAKRLAVEKENERKMKKEALKLERAKLEQENLKQLE--LQKKKKEEEKKKKLA 848
           + +E  E       E+  E + + E LK E  +LE E  ++LE  L++ ++E+E+ ++  
Sbjct: 835 EEIEELEEKLDELEEELEELEKELEELKEELEELEAE-KEELEDELKELEEEKEELEEEL 893

Query: 849 DMAARKRQREEEERKEKERKRKRVMESRRQQQEHEEKLRAKKEEERK 895
                +    +EE ++   + + +     + +    +L  + EEE +
Sbjct: 894 RELESELAELKEEIEKLRERLEELEAKLERLEVELPELEEELEEEYE 940

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 41.2 bits (97), Expect = 0.003
 Identities = 32/153 (20%), Positives = 72/153 (47%), Gaps = 9/153 (5%)

Query: 787 DVKVKALEAAEAAKRLAVEKENERKMKKEALKLERAKLEQEN---LKQLELQKKKKEE-- 841
             ++++LE      R  +E   E + + E LK E A LE+E      +LE  +++ EE  
Sbjct: 694 KNELRSLEDLLEELRRQLE---ELERQLEELKRELAALEEELEQLQSRLEELEEELEELE 750

Query: 842 EKKKKLADMAARKRQREEEERKEKERKRKRVMESRRQQQEHEEKLRAKKEEERKKKEADL 901
           E+ ++L +      +  E   +   + ++ + E   ++Q  +E+L   +EE  + +    
Sbjct: 751 EELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLD 810

Query: 902 LMVSKDETWRDYK-RVKDQGEENPAKMKKTESK 933
            +  + E+    + R++ + EE   ++++ E K
Sbjct: 811 ALERELESLEQRRERLEQEIEELEEEIEELEEK 843

Length = 1163

>gnl|CDD|217902 pfam04111, APG6, Autophagy protein Apg6

 Score = 41.0 bits (96), Expect = 0.003
 Identities = 32/126 (25%), Positives = 58/126 (46%), Gaps = 19/126 (15%)

Query: 807 ENERKMKKEAL-KLERAKLEQENLKQL--ELQKKKKEEEKKKKLADMAARKRQREEEERK 863
           E ER   K+ L KLE   +E  N + L  EL + KKEEE+                +E +
Sbjct: 42  EKERDTYKQYLSKLESQNVEISNYEALDSELDELKKEEERL--------------LDELE 87

Query: 864 EKERKRKRVMESRRQQQEHEEKLRAKKEEERKKKEADLLMVSKDETWRDYKRVKDQGEEN 923
           E E++   +     + QE +E+L  + EE +  +E +L   +  +   + + ++ Q E +
Sbjct: 88  ELEKEDDDLDGELVELQEEKEQL--ENEELQYLREYNLFDRNNLQLEDNLQSLELQYEYS 145

Query: 924 PAKMKK 929
             ++ K
Sbjct: 146 LNQLDK 151

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. Autophagy is a bulk degradation process induced by starvation in eukaryotic cells. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway. Length = 356

>gnl|CDD|237178 PRK12705, PRK12705, hypothetical protein; Provisional

 Score = 41.2 bits (97), Expect = 0.003
 Identities = 25/127 (19%), Positives = 56/127 (44%), Gaps = 2/127 (1%)

Query: 769 FIPLVQQKQAAAIITGKRDVKVKALEAAEAAKRLAVEKENERKMKKEALKLERAKLEQEN 828
            + L++++Q  A       +  +A + AE     A+ +  E  +++   + + A+ E+E 
Sbjct: 21  LVVLLKKRQRLA--KEAERILQEAQKEAEEKLEAALLEAKELLLRERNQQRQEARREREE 78

Query: 829 LKQLELQKKKKEEEKKKKLADMAARKRQREEEERKEKERKRKRVMESRRQQQEHEEKLRA 888
           L++ E +  +KEE+   +   +   + Q EE E+    R+ +     ++   E       
Sbjct: 79  LQREEERLVQKEEQLDARAEKLDNLENQLEEREKALSARELELEELEKQLDNELYRVAGL 138

Query: 889 KKEEERK 895
             E+ RK
Sbjct: 139 TPEQARK 145

Length = 508

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 40.9 bits (96), Expect = 0.004
 Identities = 32/154 (20%), Positives = 67/154 (43%), Gaps = 2/154 (1%)

Query: 789 KVKALEAAEAAKRLAVEKENERKMKKEALKLERAKLEQENLKQLELQKKKKEEEKKKKLA 848
            ++       ++   +E+E E   ++     ER +  +E L+ LE    K +EE ++   
Sbjct: 727 ALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEE 786

Query: 849 DMAARKRQREEEERKEKERKRKRVMESRRQQQEHEEKLRAKKEEERKKKEADLLMVSKDE 908
              A + + EE E + +E +R+     R  +   + + R ++E E  ++E + L    DE
Sbjct: 787 KRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDE 846

Query: 909 TWRDYKRVKDQGEENPAKMKKTESKATVVSTSDA 942
              + + ++ + EE   K +  E +A      D 
Sbjct: 847 LEEELEELEKELEE--LKEELEELEAEKEELEDE 878

Length = 1163

>gnl|CDD|221408 pfam12072, DUF3552, Domain of unknown function (DUF3552)

 Score = 39.4 bits (93), Expect = 0.004
 Identities = 52/172 (30%), Positives = 86/172 (50%), Gaps = 27/172 (15%)

Query: 791 KALEAAEAAKRLAVE--KENERKMKKEALKLERAKLEQENLKQLELQKKKKEEEKKKKLA 848
           K   A E AK++  E  KE E   KKEAL LE AK E   L+  E +++ KE  ++ +L 
Sbjct: 28  KISSAEEEAKQIIEEAKKEAEAL-KKEAL-LE-AKEEIHKLRA-EAERELKE--RRNELQ 81

Query: 849 DMAARKRQREE------EERKEKE----RKRKRVMESRRQQQEHEEKLRAKKEEERKKKE 898
               R  Q+EE      E  ++KE     K K +   ++Q +E EE+L    EE++++ E
Sbjct: 82  RQEKRLLQKEETLDRKDESLEKKEESLEEKEKELAARQQQLEEKEEELEELIEEQQQELE 141

Query: 899 --ADLLMVSKDETWRDY--KRVKDQGEENPAKM-KKTESKATVVSTSDARET 945
             + L   + +E  ++   + V+ + +   AKM K+ E +A   +   A+E 
Sbjct: 142 RISGL---TAEEA-KEILLEEVEAELKHEAAKMIKEIEEEAKEEADKKAKEI 189

This presumed domain is functionally uncharacterized. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with pfam00013, pfam01966. This domain has a single completely conserved residue A that may be functionally important. Length = 201

>gnl|CDD|220365 pfam09726, Macoilin, Transmembrane protein

 Score = 40.7 bits (95), Expect = 0.004
 Identities = 30/92 (32%), Positives = 50/92 (54%), Gaps = 11/92 (11%)

Query: 809 ERKMKKEALKLERAKLEQENLKQLELQKKKKEEEKKKKLADMAARKRQREEEERKEKERK 868
           E+++K EA     +++  E     E ++KK+EEE   + A  AA  R    EE  E  ++
Sbjct: 482 EKRLKSEA----DSRVNAEKQLAEEKKRKKEEEETAARAAAQAAASR----EECAESLKQ 533

Query: 869 RKRVMESRRQQQEHEEKLRAKKEEERK-KKEA 899
            K+ +E   ++ EH+  L+ K+EE R  +KEA
Sbjct: 534 AKQDLEMEIKKLEHD--LKLKEEECRMLEKEA 563

This entry is a highly conserved protein present in eukaryotes. Length = 680

>gnl|CDD|225288 COG2433, COG2433, Uncharacterized conserved protein [Function unknown]

 Score = 40.8 bits (96), Expect = 0.004
 Identities = 32/151 (21%), Positives = 65/151 (43%), Gaps = 18/151 (11%)

Query: 776 KQAAAIITGKRDVKVKALEAAEAAKRLAVEKENERKMKKEALKLERAKLEQENLKQLELQ 835
            +A + +  +   + K     E  + + V ++  +K+++    +ER + E   LK+   +
Sbjct: 391 AEALSKVKEEERPREKEGTEEEERREITVYEKRIKKLEE---TVERLEEENSELKRELEE 447

Query: 836 KKKKEEEKKKKLADMAARKRQREEEERKEKERKRKRVMESRRQQQEHEEKLRAKKEEERK 895
            K++ E+ + +L         R E   K ++ +  R  + R       E+L   KE E K
Sbjct: 448 LKREIEKLESELERF------RREVRDKVRKDREIRARDRRI------ERLE--KELEEK 493

Query: 896 KKEADLLMVSKDETWRDYKRVKDQGEENPAK 926
           KK  + L     E  R  ++++  G+  P K
Sbjct: 494 KKRVEELERKLAEL-RKMRKLELSGKGTPVK 523

Length = 652

>gnl|CDD|219978 pfam08701, GN3L_Grn1, GNL3L/Grn1 putative GTPase

 Score = 37.2 bits (87), Expect = 0.004
 Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 20/81 (24%)

Query: 806 KENERKMKKEALKLERAKLEQENLKQLELQKKKKEEE--------KKKKLADMAARKRQR 857
            E+ RK++KEA K                + KKK++         K++ L ++  +KR++
Sbjct: 11  AEHHRKLRKEAKKN------------PTWKSKKKKDPGIPNSFPFKEEILEEIEEKKRKQ 58

Query: 858 EEEERKEKERKRKRVMESRRQ 878
           EEE+ + KE ++    E+R++
Sbjct: 59  EEEKERRKEARKAERAEARKR 79

Grn1 (yeast) and GNL3L (human) are putative GTPases which are required for growth and play a role in processing of nucleolar pre-rRNA. This family contains a potential nuclear localisation signal. Length = 80

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	1059
KOG0163	1259	consensus Myosin class VI heavy chain [Cytoskeleto	99.39
PF03941	57	INCENP_ARK-bind: Inner centromere protein, ARK bin	98.58
PTZ00121	2084	MAEBL; Provisional	98.53
PTZ00121	2084	MAEBL; Provisional	98.36
KOG1029	1118	consensus Endocytic adaptor protein intersectin [S	98.21
KOG4364	811	consensus Chromatin assembly factor-I [Chromatin s	98.2
PF11600	216	CAF-1_p150: Chromatin assembly factor 1 complex p1	97.85
PRK09510	387	tolA cell envelope integrity inner membrane protei	97.84
KOG4364	811	consensus Chromatin assembly factor-I [Chromatin s	97.76
PF05672	171	MAP7: MAP7 (E-MAP-115) family; InterPro: IPR008604	97.54
KOG1029	1118	consensus Endocytic adaptor protein intersectin [S	97.54
PRK09510	387	tolA cell envelope integrity inner membrane protei	97.5
KOG0163	1259	consensus Myosin class VI heavy chain [Cytoskeleto	97.39
KOG1144	1064	consensus Translation initiation factor 5B (eIF-5B	97.25
KOG4456	134	consensus Inner centromere protein (INCENP), C-ter	97.24
COG3064	387	TolA Membrane protein involved in colicin uptake [	96.92
KOG2072	988	consensus Translation initiation factor 3, subunit	96.82
KOG2891	445	consensus Surface glycoprotein [General function p	96.67
KOG1144	1064	consensus Translation initiation factor 5B (eIF-5B	96.65
KOG2412	591	consensus Nuclear-export-signal (NES)-containing p	96.53
PF05262	489	Borrelia_P83: Borrelia P83/100 protein; InterPro:	96.49
PF05262	489	Borrelia_P83: Borrelia P83/100 protein; InterPro:	95.92
KOG2072	988	consensus Translation initiation factor 3, subunit	95.73
KOG4661	940	consensus Hsp27-ERE-TATA-binding protein/Scaffold	95.67
KOG2891	445	consensus Surface glycoprotein [General function p	95.57
KOG4661	940	consensus Hsp27-ERE-TATA-binding protein/Scaffold	95.44
PRK00247	429	putative inner membrane protein translocase compon	93.37
PF15346	149	ARGLU: Arginine and glutamate-rich 1	93.27
PF12037	276	DUF3523: Domain of unknown function (DUF3523); Int	92.72
KOG3654	708	consensus Uncharacterized CH domain protein [Cytos	92.67
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	92.22
PF15236	157	CCDC66: Coiled-coil domain-containing protein 66	92.17
KOG3654	708	consensus Uncharacterized CH domain protein [Cytos	91.94
PF15346	149	ARGLU: Arginine and glutamate-rich 1	91.89
KOG0742	630	consensus AAA+-type ATPase [Posttranslational modi	91.59
PF02029	492	Caldesmon: Caldesmon; InterPro: IPR006018 This gro	90.81
KOG2689	290	consensus Predicted ubiquitin regulatory protein [	90.48
TIGR03319	514	YmdA_YtgF conserved hypothetical protein YmdA/YtgF	90.36
PRK12704	520	phosphodiesterase; Provisional	90.23
PRK12705	508	hypothetical protein; Provisional	89.95
PRK00106	535	hypothetical protein; Provisional	88.69
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	88.37
KOG3634	361	consensus Troponin [Cytoskeleton]	87.67
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	87.49
PF07946	321	DUF1682: Protein of unknown function (DUF1682); In	86.91
PF07946	321	DUF1682: Protein of unknown function (DUF1682); In	85.86
KOG0742	630	consensus AAA+-type ATPase [Posttranslational modi	85.44
KOG2357	440	consensus Uncharacterized conserved protein [Funct	82.19

>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]

Probab=99.39  E-value=1.2e-12  Score=152.23  Aligned_cols=56  Identities=18%  Similarity=0.335  Sum_probs=45.1

Q ss_pred             cCCCCCCcccCCCCCCCCCCc------ccc------hhhhccCCCCchhhhhhhhhhhcccccCCCCCcc
Q 001530          978 TNQNQEPSYDISPYKDSDNEE------EED------DDDRLNTKFIPSWASKRASALIIPSLLSVSPEVI 1035 (1059)
Q Consensus       978 dnSs~e~SYdiSPYk~sDdeD------D~e------DDe~Rr~K~IPSWASKnaLaqALlSQqrVDPDkI 1035 (1059)
                      ......+.||+|.|+|++++|      |.+      ++||||+|.|+.|+++|..++.++.+ +. |..+
T Consensus      1057 ~aa~~~~KYDl~~wkyaeLRDtINTS~DieLL~ACreEFhRRLkvY~~WKskN~~~~~~~~~-RA-p~sv 1124 (1259)
T KOG0163|consen 1057 QAALGKQKYDLSKWKYAELRDTINTSCDIELLEACREEFHRRLKVYHAWKSKNRKRTTMPEN-RA-PLSV 1124 (1259)
T ss_pred             HHHhccCccccccccHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHhcCCccCCCCcc-cc-chhH
Confidence            334567899999999999999      443      78999999999999999888777776 55 4443

>PF03941 INCENP_ARK-bind: Inner centromere protein, ARK binding region; InterPro: IPR005635 This region of the inner centromere protein has been found to be necessary and sufficient for binding to aurora-related kinase

Probab=98.58  E-value=7.1e-09  Score=88.48  Aligned_cols=48  Identities=25%  Similarity=0.387  Sum_probs=32.2

Q ss_pred             hhhccCCCCchhhhhhhhhhhcccccCCCCCccCCCCCCCCccccccc
Q 001530         1003 DDRLNTKFIPSWASKRASALIIPSLLSVSPEVIFPPGSFCSISEVLLP 1050 (1059)
Q Consensus      1003 De~Rr~K~IPSWASKnaLaqALlSQqrVDPDkIF~~~~spdLSEIFlP 1050 (1059)
                      |+..++|.||+||++..|..+|..|+.+||+.||+.+..|+|.+||.+
T Consensus        10 d~~~~~k~iP~WA~~~~L~~~L~~Q~~~Dpd~IFG~~~~~~LeeiF~~   57 (57)
T PF03941_consen   10 DEDEPRKPIPSWAQSPNLRQALKKQQNIDPDEIFGPIPPLNLEEIFNK   57 (57)
T ss_dssp             ----------GGGSHHHHHHHHHHHHHS-HHHHCTTSB---CCCCTS-
T ss_pred             ccccccCCCCCCcCcHHHHHHHHHHhccCHHHHcCCCCCCCHHHHccC
Confidence            344588999999999999999999999999999999999999999964

This interaction has been implicated in the coordination of chromosome segregation with cell division in yeast [].; PDB: 2BFX_C 2BFY_C 3ZTX_D 2VGO_D 2VGP_D 2VRX_D 4AF3_D.

>PTZ00121 MAEBL; Provisional

Probab=98.53  E-value=2.4e-06  Score=106.10  Aligned_cols=13  Identities=38%  Similarity=0.766  Sum_probs=11.4

Q ss_pred             HHhhhhccCCCcc
Q 001530          448 LCKSACMNTPLSH  460 (1059)
Q Consensus       448 lcks~~~~tp~~h  460 (1059)
                      +|+|+.+.+|++-
T Consensus       752 MCks~v~~~~~~~  764 (2084)
T PTZ00121        752 MCKSKIFPNPFSM  764 (2084)
T ss_pred             hHHHHhhcCccch
Confidence            7999999999874

>PTZ00121 MAEBL; Provisional

Probab=98.36  E-value=1.5e-05  Score=99.28  Aligned_cols=19  Identities=26%  Similarity=0.497  Sum_probs=10.6

Q ss_pred             cCCCCccccccCCCccccc
Q 001530          206 ILPGNNFSCGAEDSWPQHK  224 (1059)
Q Consensus       206 ~~~~~~f~~~~~~s~pqhk  224 (1059)
                      +|..++|.|.----+|+-.
T Consensus       427 ~LTAn~fd~~Qni~yp~ie  445 (2084)
T PTZ00121        427 ILTANSFDFAQNIIYPELE  445 (2084)
T ss_pred             eeeccccccccccccchHH
Confidence            4556666665545555543

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.21  E-value=4.6e-05  Score=91.12  Aligned_cols=64  Identities=30%  Similarity=0.356  Sum_probs=38.7

Q ss_pred             hhhhhhHhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 001530          772 LVQQKQAAAIITGKRDVKVKALEAAEAAKRLAVEKENERKMKKEALKLERAKLEQENLKQLELQKK  837 (1059)
Q Consensus       772 lvQqKQK~AqIdEKrEvr~KalEAEEAaKReEEKrE~eRkqeKEAreeEraRkEEEEkRk~EeeRR  837 (1059)
                      -|-+|.|..+..+..+.++.+..-++.++|+++.  .+++.++|+.+++|.|+|+|.+++.|.+++
T Consensus       313 TFEDKrkeNy~kGqaELerRRq~leeqqqreree--~eqkEreE~ekkererqEqErk~qlElekq  376 (1118)
T KOG1029|consen  313 TFEDKRKENYEKGQAELERRRQALEEQQQREREE--VEQKEREEEEKKERERQEQERKAQLELEKQ  376 (1118)
T ss_pred             chhhhhHHhHhhhhHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4677777888777777655555555555554332  334444555556677777776666655543

>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]

Probab=98.20  E-value=3.7e-05  Score=90.76  Aligned_cols=56  Identities=21%  Similarity=0.165  Sum_probs=36.8

Q ss_pred             CCCCCCcccccccchhhhhhhhhhcccccccCccccccccccCCCCCCCCcCCCCCCCCccccccc
Q 001530          564 SNPDLPCISEENENTDEVVNVFQEGISLEVASPVGELWDWKKSNSSSSDKQGSLNPELPFISEEDE  629 (1059)
Q Consensus       564 ~~p~lpci~eene~~~~~~~~f~egi~~~~~sp~~~l~~~~~s~s~~~~~~~~~~~~l~~IsEEnE  629 (1059)
                      |.-..|-|++=|+.-|..-+-|.+|....  +|--        .-.--..|.++|.-.|.|||++-
T Consensus        37 S~~~e~~t~~~N~~~d~~~~d~~~~~~~~--~~~~--------~~~~~~~~~~~n~~~~L~ae~~~   92 (811)
T KOG4364|consen   37 SEEKESQTSSLNLEMDGLFDDFREVMDKS--KRTD--------LFSGFSECSSLNSMVALLAEEMS   92 (811)
T ss_pred             ccccccchhhhhcccchhHHHHHHHhccc--cccc--------cccCceeccccccccchhhhhcc
Confidence            33445778888999998888888886551  1100        00112357888888899998874

>PF11600 CAF-1_p150: Chromatin assembly factor 1 complex p150 subunit, N-terminal; InterPro: IPR021644 P150 is a polypeptide subunit of CAF-1, which functions in depositing newly synthesised and acetylated histones H3/H4 into chromatin during DNA replication and repair []

Probab=97.85  E-value=0.0014  Score=68.83  Aligned_cols=15  Identities=20%  Similarity=-0.031  Sum_probs=11.4

Q ss_pred             ccCcccccccCcccc
Q 001530          921 EENPAKMKKTESKAT  935 (1059)
Q Consensus       921 eNnl~k~P~TES~as  935 (1059)
                      .++||.+|.+...+.
T Consensus       182 ~~~FF~k~~~~~~~~  196 (216)
T PF11600_consen  182 ITSFFKKPKTPKAPK  196 (216)
T ss_pred             HHHHhCCCCCCCCCC
Confidence            389999888766664

P150 is the HP1 interaction site of CAF-1 and lies within the N-terminal region of the protein [].

>PRK09510 tolA cell envelope integrity inner membrane protein TolA; Provisional

Probab=97.84  E-value=0.0012  Score=75.17  Aligned_cols=37  Identities=11%  Similarity=0.193  Sum_probs=15.1

Q ss_pred             CchhhhhhhhhhhcccccCCCCCc-cCCCCCCCCccccccc
Q 001530         1011 IPSWASKRASALIIPSLLSVSPEV-IFPPGSFCSISEVLLP 1050 (1059)
Q Consensus      1011 IPSWASKnaLaqALlSQqrVDPDk-IF~~~~spdLSEIFlP 1050 (1059)
                      .|.|++.-.-+ ....-.|.+|+. +|.....++|.  |.|
T Consensus       349 d~aldrAA~~A-ar~a~lP~pP~~~vye~~k~i~lt--F~P  386 (387)
T PRK09510        349 DPALCQAALAA-AKTAKIPKPPSQEVYEKFKNAPLD--FKP  386 (387)
T ss_pred             CHHHHHHHHHH-HHcCCCCCCCchHHHHhhccceee--eCC
Confidence            34555544222 222222444442 55443334444  554

>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]

Probab=97.76  E-value=0.0005  Score=81.71  Aligned_cols=15  Identities=13%  Similarity=0.377  Sum_probs=8.6

Q ss_pred             ccCCCCchhhhhhhh
Q 001530         1006 LNTKFIPSWASKRAS 1020 (1059)
Q Consensus      1006 Rr~K~IPSWASKnaL 1020 (1059)
                      ||-.||++|-.+..+
T Consensus       490 rRP~YyGTWrKKS~~  504 (811)
T KOG4364|consen  490 RRPGYYGTWRKKSQV  504 (811)
T ss_pred             cCCcccccccccccc
Confidence            333477777765543

>PF05672 MAP7: MAP7 (E-MAP-115) family; InterPro: IPR008604 The organisation of microtubules varies with the cell type and is presumably controlled by tissue-specific microtubule-associated proteins (MAPs)

Probab=97.54  E-value=0.0039  Score=64.57  Aligned_cols=52  Identities=31%  Similarity=0.335  Sum_probs=22.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 001530          795 AAEAAKRLAVEKENERKMKKEALKLERAKLEQENLKQLELQKKKKEEEKKKKL  847 (1059)
Q Consensus       795 AEEAaKReEEKrE~eRkqeKEAreeEraRkEEEEkRk~EeeRRKkEEERkKKE  847 (1059)
                      +++|.+..++++...|.++ +..++++.++++.+++..++..++..+++.+.+
T Consensus        21 aEEAtkiLAEkRRlAReQk-ErEE~ER~ekEE~er~~ree~~~k~~Ee~~r~e   72 (171)
T PF05672_consen   21 AEEATKILAEKRRLAREQK-EREEQERLEKEEQERRKREELARKLAEERARRE   72 (171)
T ss_pred             HHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4556666655544333332 223334444444444444444444444444333

The 115 kDa epithelial MAP (E-MAP-115) has been identified as a microtubule-stabilising protein predominantly expressed in cell lines of epithelial origin []. The binding of this microtubule associated protein is nucleotide independent [].

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.54  E-value=0.0023  Score=77.29  Aligned_cols=16  Identities=63%  Similarity=0.844  Sum_probs=8.2

Q ss_pred             HHHHHHHHHHHHHHHH
Q 001530          853 RKRQREEEERKEKERK  868 (1059)
Q Consensus       853 RKRqeEEekRKEeErK  868 (1059)
                      -.+++||++||+.|++
T Consensus       383 iE~qrEEerkkeie~r  398 (1118)
T KOG1029|consen  383 IERQREEERKKEIERR  398 (1118)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            4455555555544443

>PRK09510 tolA cell envelope integrity inner membrane protein TolA; Provisional

Probab=97.50  E-value=0.0087  Score=68.53  Aligned_cols=6  Identities=0%  Similarity=-0.236  Sum_probs=2.8

Q ss_pred             cCcccc
Q 001530          922 ENPAKM  927 (1059)
Q Consensus       922 Nnl~k~  927 (1059)
                      +.||..
T Consensus       260 dd~~~g  265 (387)
T PRK09510        260 DDLFGG  265 (387)
T ss_pred             HHHhhc
Confidence            445543

>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]

Probab=97.39  E-value=0.0019  Score=77.78  Aligned_cols=80  Identities=33%  Similarity=0.500  Sum_probs=46.5

Q ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH--HHHHHHHhHHHHHHHHHHHHHHHHHH
Q 001530          820 ERAKLEQENLKQLELQKKKKEEEKKKKLADMAARKRQREEEERK-EKERKRK--RVMESRRQQQEHEEKLRAKKEEERKK  896 (1059)
Q Consensus       820 EraRkEEEEkRk~EeeRRKkEEERkKKEaE~eeRKRqeEEekRK-EeErKRK--r~EEeRkkQaE~EeK~ReeeEeErK~  896 (1059)
                      ||+|+|+|+++      |+++||+++.++|++.+++++||++++ |+++++-  ..+|+..+++|+|.|++.+.|+||+.
T Consensus       936 ER~rrEaeek~------rre~ee~k~~k~e~e~kRK~eEeqr~~qee~e~~l~~e~q~qla~e~eee~k~q~~~Eqer~D 1009 (1259)
T KOG0163|consen  936 ERKRREAEEKR------RREEEEKKRAKAEMETKRKAEEEQRKAQEEEERRLALELQEQLAKEAEEEAKRQNQLEQERRD 1009 (1259)
T ss_pred             HHHhhhhhHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            55555554433      444555556666666666665555433 3333322  33344556677777888888888888


Q ss_pred             HHHH-Hhhhh
Q 001530          897 KEAD-LLMVS  905 (1059)
Q Consensus       897 KEE~-rkEqE  905 (1059)
                      ++-. |.+..
T Consensus      1010 ~~la~RlA~s 1019 (1259)
T KOG0163|consen 1010 HELALRLANS 1019 (1259)
T ss_pred             HHHHHHHhhc
Confidence            8877 55543

>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]

Probab=97.25  E-value=0.002  Score=77.94  Aligned_cols=29  Identities=34%  Similarity=0.569  Sum_probs=15.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 001530          851 AARKRQREEEERKEKERKRKRVMESRRQQ  879 (1059)
Q Consensus       851 eeRKRqeEEekRKEeErKRKr~EEeRkkQ  879 (1059)
                      ++++|.+||+.|+++|++|++.|+++..+
T Consensus       231 E~qkreeEE~~r~eeEEer~~ee~E~~~e  259 (1064)
T KOG1144|consen  231 ERQKREEEERLRREEEEERRREEEEAQEE  259 (1064)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555555555665555555555544443

>KOG4456 consensus Inner centromere protein (INCENP), C-terminal domain [Cell cycle control, cell division, chromosome partitioning]

Probab=97.24  E-value=0.00012  Score=72.30  Aligned_cols=65  Identities=20%  Similarity=0.253  Sum_probs=49.5

Q ss_pred             CCCCcccchhhhccCCCCchhhhhhhhhhhcccccCCCCCcc---CCCCCCCCccccccchhhhhccC
Q 001530          994 SDNEEEEDDDDRLNTKFIPSWASKRASALIIPSLLSVSPEVI---FPPGSFCSISEVLLPRRQQQKMR 1058 (1059)
Q Consensus       994 sDdeDD~eDDe~Rr~K~IPSWASKnaLaqALlSQqrVDPDkI---F~~~~spdLSEIFlPrKpQr~~~ 1058 (1059)
                      +.++||+.||+..++|.+|+||+...+..++..|..--|..|   |+-.-.++|.+||...++-..+|
T Consensus        49 dlnsDdstDdE~hpRkp~PtWar~~v~~eai~~qa~~pp~~v~~Ff~~~pkpdLkeIF~~~~p~~~KR  116 (134)
T KOG4456|consen   49 DLNSDDSTDDEKHPRKPFPTWARDMVIVEAIEEQAKNPPFNVNTFFGSMPKPDLKEIFGEMVPSKKKR  116 (134)
T ss_pred             hcccccccccccCCCCCCchhhhhchHHHHHHHHhhCCchHHHHHhcccCCcCHHHHHHhhhhhhhhc
Confidence            336667778888999999999999999888887755434443   56556699999999988844444

>COG3064 TolA Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]

Probab=96.92  E-value=0.033  Score=62.44  Aligned_cols=8  Identities=25%  Similarity=0.472  Sum_probs=2.9

Q ss_pred             HHhHHHHH
Q 001530          876 RRQQQEHE  883 (1059)
Q Consensus       876 RkkQaE~E  883 (1059)
                      ++.++|.|
T Consensus       192 ~k~kaEaE  199 (387)
T COG3064         192 AKKKAEAE  199 (387)
T ss_pred             HHHHHHHH
Confidence            33333333

>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]

Probab=96.82  E-value=0.032  Score=68.37  Aligned_cols=30  Identities=27%  Similarity=0.266  Sum_probs=15.4

Q ss_pred             ccccccccccCCCccCCCCCCCCCCCcccccCCCCCccc
Q 001530          507 CFDEEADHAYQGRSYSDCSLFSSTQPASEIRKPFGSPIG  545 (1059)
Q Consensus       507 ~~~~~~n~~~~grs~sd~~~~s~~~~~~~~~~p~~sp~~  545 (1059)
                      ++.-.|||.      ++|.-|.+--+   ..+||-+|-|
T Consensus       477 ~v~iriDH~------~~~v~FgsDl~---~s~~~~~~eg  506 (988)
T KOG2072|consen  477 DVSIRIDHE------SNSVSFGSDLF---LSKEEDEPEG  506 (988)
T ss_pred             ceeEEeccc------cceeeeccccc---cccccccCCC
Confidence            345566663      56666654221   2256666655

>KOG2891 consensus Surface glycoprotein [General function prediction only]

Probab=96.67  E-value=0.033  Score=61.71  Aligned_cols=43  Identities=23%  Similarity=0.336  Sum_probs=29.4

Q ss_pred             hhHHHH-HHHHHHHhhhhc-cCCCccccccccccCCCCCcccccc
Q 001530          437 TTIERA-SVLEQLCKSACM-NTPLSHFFTTYKLHQAPNLCQSVPN  479 (1059)
Q Consensus       437 ~~~~~a-~~~e~lcks~~~-~tp~~h~~~~~k~~~~~~~~qsvpn  479 (1059)
                      |.+++. |-.|-+||..-+ --|....-.+.-|++.--+-||++|
T Consensus         7 tald~lgseaedf~kaq~lylkpia~ikisv~lpql~ipgksisn   51 (445)
T KOG2891|consen    7 TALDDLGSEAEDFCKAQGLYLKPIAKIKISVALPQLKIPGKSISN   51 (445)
T ss_pred             hHHhhhhhHHHhhhhhcceeeccceeEEEEEecccccCCCcccch
Confidence            445554 666778887544 3466666667777777778888888

>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]

Probab=96.65  E-value=0.022  Score=69.38  Aligned_cols=6  Identities=33%  Similarity=0.191  Sum_probs=2.3

Q ss_pred             ccCCCC
Q 001530         1006 LNTKFI 1011 (1059)
Q Consensus      1006 Rr~K~I 1011 (1059)
                      +..|.+
T Consensus       437 a~~k~~  442 (1064)
T KOG1144|consen  437 AAVKAI  442 (1064)
T ss_pred             cccccc
Confidence            333444

>KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification]

Probab=96.53  E-value=0.05  Score=64.41  Aligned_cols=9  Identities=33%  Similarity=0.685  Sum_probs=3.3

Q ss_pred             HHHHHHHHH
Q 001530          839 KEEEKKKKL  847 (1059)
Q Consensus       839 kEEERkKKE  847 (1059)
                      .|.+|++++
T Consensus       224 ~Eaerk~~~  232 (591)
T KOG2412|consen  224 EEAERKRRA  232 (591)
T ss_pred             hhhHHHHHH
Confidence            333333333

>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins

Probab=96.49  E-value=0.07  Score=62.98  Aligned_cols=25  Identities=44%  Similarity=0.474  Sum_probs=17.4

Q ss_pred             hhhchhh-HHHHHHHHHHHHHHHHHH
Q 001530          781 IITGKRD-VKVKALEAAEAAKRLAVE  805 (1059)
Q Consensus       781 qIdEKrE-vr~KalEAEEAaKReEEK  805 (1059)
                      -++.+++ ++.++++++++.++.+.+
T Consensus       193 ~~~~rk~m~D~KEreaeea~k~aq~~  218 (489)
T PF05262_consen  193 GIDKRKDMVDIKEREAEEAAKRAQEA  218 (489)
T ss_pred             ChhhhhhhHHHHHHHhHHHHHHHHHH
Confidence            4555666 778888888887776543

>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins

Probab=95.92  E-value=0.32  Score=57.64  Aligned_cols=11  Identities=18%  Similarity=0.163  Sum_probs=6.2

Q ss_pred             cceeecccccc
Q 001530          934 ATVVSTSDARE  944 (1059)
Q Consensus       934 as~VntADgrk  944 (1059)
                      .+.++++.++.
T Consensus       390 ~S~~~~Ir~r~  400 (489)
T PF05262_consen  390 RSPVNGIRGRT  400 (489)
T ss_pred             ccccceeccce
Confidence            45555566655

>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]

Probab=95.73  E-value=0.95  Score=56.32  Aligned_cols=14  Identities=36%  Similarity=0.501  Sum_probs=6.1

Q ss_pred             ccCccccccccccc
Q 001530          646 MPSSVKREPLADIT  659 (1059)
Q Consensus       646 ~~ss~~R~~L~DIt  659 (1059)
                      |||.-.|-.|..|+
T Consensus       512 ~~sE~ir~~L~~m~  525 (988)
T KOG2072|consen  512 MPSEGIRSQLTAMA  525 (988)
T ss_pred             CchHhHHHHHHHHH
Confidence            33443344444443

>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]

Probab=95.67  E-value=0.18  Score=60.15  Aligned_cols=36  Identities=14%  Similarity=0.255  Sum_probs=23.5

Q ss_pred             ecCCCCCCCCCCCCCcccCCCChhhHHHHHHHHHHHh
Q 001530          414 ETDNGHSGTAGEDINFDKLDLPKTTIERASVLEQLCK  450 (1059)
Q Consensus       414 q~d~~~~~~~~~~~~~~~~dlp~~~~~~a~~~e~lck  450 (1059)
                      --|-+.+.+.|+-.|-+-+-|-+..-++.++-| |++
T Consensus       294 KRepaEqpGDgertdcepvglepaveqssaase-lae  329 (940)
T KOG4661|consen  294 KREPAEQPGDGERTDCEPVGLEPAVEQSSAASE-LAE  329 (940)
T ss_pred             hcCcccCCCCccccccccccccchhhhhhhhhh-hhh
Confidence            345556677788888888888776655544444 444

>KOG2891 consensus Surface glycoprotein [General function prediction only]

Probab=95.57  E-value=0.41  Score=53.41  Aligned_cols=16  Identities=25%  Similarity=0.553  Sum_probs=8.3

Q ss_pred             CCChhhHHHHHHHHHH
Q 001530          433 DLPKTTIERASVLEQL  448 (1059)
Q Consensus       433 dlp~~~~~~a~~~e~l  448 (1059)
                      .+|-.+|-+--++|+|
T Consensus        43 ~ipgksisnwdlmerl   58 (445)
T KOG2891|consen   43 KIPGKSISNWDLMERL   58 (445)
T ss_pred             cCCCcccchHHHHHHH
Confidence            3444555555555555

>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]

Probab=95.44  E-value=0.61  Score=55.98  Aligned_cols=15  Identities=40%  Similarity=0.556  Sum_probs=10.7

Q ss_pred             hhhccchhhhhh-cCC
Q 001530           88 LVKMDHLEKVVT-EGS  102 (1059)
Q Consensus        88 ~~~~~~~~~~~~-~~~  102 (1059)
                      -|-|..|+|.|. ||-
T Consensus        54 sVLmERLkKal~~EG~   69 (940)
T KOG4661|consen   54 SVLMERLKKALRAEGL   69 (940)
T ss_pred             HHHHHHHHHHHHhcCC
Confidence            466899999875 443

>PRK00247 putative inner membrane protein translocase component YidC; Validated

Probab=93.37  E-value=0.74  Score=53.93  Aligned_cols=32  Identities=13%  Similarity=0.080  Sum_probs=16.9

Q ss_pred             ccccCccccccccchhhhhhhhHhhhhhchhh
Q 001530          756 ESKHNNIVSNITSFIPLVQQKQAAAIITGKRD  787 (1059)
Q Consensus       756 ~~K~~Nivs~i~Sfi~lvQqKQK~AqIdEKrE  787 (1059)
                      -|=.+|+.+.+-++|=.+.=..+..+-++-++
T Consensus       254 YWv~snlwtl~Qq~i~~~~l~~~~P~~~~~~~  285 (429)
T PRK00247        254 YWVANNLWTLIQNIIMYLILERKYPLTDEFKE  285 (429)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHhcCCCcchHH
Confidence            34457777776665544333344444444444

>PF15346 ARGLU: Arginine and glutamate-rich 1

Probab=93.27  E-value=4.3  Score=42.00  Aligned_cols=16  Identities=38%  Similarity=0.574  Sum_probs=6.8

Q ss_pred             HHHHHHHHHHHHHHHH
Q 001530          853 RKRQREEEERKEKERK  868 (1059)
Q Consensus       853 RKRqeEEekRKEeErK  868 (1059)
                      .++.-||..+|.+++.
T Consensus        88 n~rkvEEAQrk~aeEr  103 (149)
T PF15346_consen   88 NRRKVEEAQRKLAEER  103 (149)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            3444444444444443

>PF12037 DUF3523: Domain of unknown function (DUF3523); InterPro: IPR021911 This presumed domain is functionally uncharacterised

Probab=92.72  E-value=15  Score=41.48  Aligned_cols=6  Identities=17%  Similarity=0.307  Sum_probs=2.3

Q ss_pred             cccccC
Q 001530          731 HNRFTK  736 (1059)
Q Consensus       731 ~~RfsK  736 (1059)
                      .+.|--
T Consensus        26 ~~~FDP   31 (276)
T PF12037_consen   26 ASGFDP   31 (276)
T ss_pred             cCCCCc
Confidence            334433

This domain is found in eukaryotes. This domain is typically between 257 to 277 amino acids in length. This domain is found associated with PF00004 from PFAM. This domain has a conserved LER sequence motif.

>KOG3654 consensus Uncharacterized CH domain protein [Cytoskeleton]

Probab=92.67  E-value=0.5  Score=55.98  Aligned_cols=19  Identities=37%  Similarity=0.494  Sum_probs=7.2

Q ss_pred             HHHHHhhHHHHHHHHHHHH
Q 001530          825 EQENLKQLELQKKKKEEEK  843 (1059)
Q Consensus       825 EEEEkRk~EeeRRKkEEER  843 (1059)
                      |.|.+.++|+.+|+.||+|
T Consensus       415 eae~e~kreearrkaeeer  433 (708)
T KOG3654|consen  415 EAEKEQKREEARRKAEEER  433 (708)
T ss_pred             HHHHHHHHHHHHHhhHhhh
Confidence            3333333334433333333

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=92.22  E-value=0.33  Score=60.92  Aligned_cols=16  Identities=38%  Similarity=0.328  Sum_probs=10.8

Q ss_pred             cccCCCCCcccccchh
Q 001530          466 KLHQAPNLCQSVPNRL  481 (1059)
Q Consensus       466 k~~~~~~~~qsvpn~l  481 (1059)
                      -|-.++++.|+-||.+
T Consensus       552 ~lk~~l~~d~~np~ar  567 (1018)
T KOG2002|consen  552 LLKDALNIDSSNPNAR  567 (1018)
T ss_pred             HHHHHHhcccCCcHHH
Confidence            3456777888888753

>PF15236 CCDC66: Coiled-coil domain-containing protein 66

Probab=92.17  E-value=9.3  Score=39.89  Aligned_cols=7  Identities=29%  Similarity=0.174  Sum_probs=2.8

Q ss_pred             Hhhhhhc
Q 001530          778 AAAIITG  784 (1059)
Q Consensus       778 K~AqIdE  784 (1059)
                      .++++.+
T Consensus        42 Dpa~~eE   48 (157)
T PF15236_consen   42 DPAQIEE   48 (157)
T ss_pred             CHHHHHH
Confidence            3444433

>KOG3654 consensus Uncharacterized CH domain protein [Cytoskeleton]

Probab=91.94  E-value=0.68  Score=54.96  Aligned_cols=17  Identities=41%  Similarity=0.606  Sum_probs=8.3

Q ss_pred             HHHHHHHHHHHHHHHHH
Q 001530          853 RKRQREEEERKEKERKR  869 (1059)
Q Consensus       853 RKRqeEEekRKEeErKR  869 (1059)
                      ++..+||+.+||+|..|
T Consensus       426 rrkaeeer~~keee~ar  442 (708)
T KOG3654|consen  426 RRKAEEERAPKEEEVAR  442 (708)
T ss_pred             HHhhHhhhcchhhhhhH
Confidence            44444455555555543

>PF15346 ARGLU: Arginine and glutamate-rich 1

Probab=91.89  E-value=6.4  Score=40.78  Aligned_cols=19  Identities=42%  Similarity=0.414  Sum_probs=9.0

Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 001530          856 QREEEERKEKERKRKRVME  874 (1059)
Q Consensus       856 qeEEekRKEeErKRKr~EE  874 (1059)
                      ..++..++.+|.++|..+|
T Consensus        84 ileen~rkvEEAQrk~aeE  102 (149)
T PF15346_consen   84 ILEENRRKVEEAQRKLAEE  102 (149)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3444445555555444444

>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=91.59  E-value=14  Score=44.24  Aligned_cols=6  Identities=17%  Similarity=0.346  Sum_probs=2.2

Q ss_pred             chhhhh
Q 001530          769 FIPLVQ  774 (1059)
Q Consensus       769 fi~lvQ  774 (1059)
                      ++.+.+
T Consensus        97 vfel~r  102 (630)
T KOG0742|consen   97 VFELAR  102 (630)
T ss_pred             HHHHHH
Confidence            333333

>PF02029 Caldesmon: Caldesmon; InterPro: IPR006018 This group of proteins includes two protein families: caldesmon and lymphocyte specific protein

Probab=90.81  E-value=1  Score=53.61  Aligned_cols=10  Identities=50%  Similarity=0.451  Sum_probs=6.8

Q ss_pred             eeeccccccc
Q 001530          936 VVSTSDARET  945 (1059)
Q Consensus       936 ~VntADgrka  945 (1059)
                      +|+-+|++..
T Consensus       382 ~vskid~rle  391 (492)
T PF02029_consen  382 VVSKIDDRLE  391 (492)
T ss_pred             ccccchhhHH
Confidence            6667777763

Caldesmon (CDM) is an actin- and myosin-binding protein implicated in the regulation of actomyosin interactions in smooth muscle and non-muscle cells, possibly acting as a bridge between myosin and actin filaments []. CDM is believed to be an elongated molecule, with an N-terminal myosin/calmodulin- binding domain and a C-terminal tropomyosin/actin/calmodulin-binding domain, separated by a 40nm-long central helix []. A high-molecular-weight form of CDM is predominantly expressed in smooth muscles, while a low-molecular-weight form is widely distributed in non- muscle tissues and cells (the protein is not expressed in skeletal muscle or heart).

>KOG2689 consensus Predicted ubiquitin regulatory protein [Posttranslational modification, protein turnover, chaperones]

Probab=90.48  E-value=2.9  Score=46.88  Aligned_cols=7  Identities=0%  Similarity=0.008  Sum_probs=2.9

Q ss_pred             hhhhhhh
Q 001530          906 KDETWRD  912 (1059)
Q Consensus       906 ~keakee  912 (1059)
                      +|+++.+
T Consensus       172 eRka~~e  178 (290)
T KOG2689|consen  172 ERKAKYE  178 (290)
T ss_pred             HHHHHhc
Confidence            3444443

>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF

Probab=90.36  E-value=18  Score=43.53  Aligned_cols=27  Identities=22%  Similarity=0.276  Sum_probs=18.7

Q ss_pred             cCcccccccCcccceee-cccccccchh
Q 001530          922 ENPAKMKKTESKATVVS-TSDARETSIV  948 (1059)
Q Consensus       922 Nnl~k~P~TES~as~Vn-tADgrkas~v  948 (1059)
                      .++..+-.++...|+|. .+|.+|+-+|
T Consensus       193 qr~a~~~~~e~~~~~v~lp~d~~kgrii  220 (514)
T TIGR03319       193 QRYAGDHVAETTVSVVNLPNDEMKGRII  220 (514)
T ss_pred             HhccchhhhhheeeeEEcCChhhhcccc
Confidence            35556667777778888 4778887654

>PRK12704 phosphodiesterase; Provisional

Probab=90.23  E-value=18  Score=43.51  Aligned_cols=27  Identities=22%  Similarity=0.209  Sum_probs=18.4

Q ss_pred             CcccccccCcccceee-cccccccchhh
Q 001530          923 NPAKMKKTESKATVVS-TSDARETSIVL  949 (1059)
Q Consensus       923 nl~k~P~TES~as~Vn-tADgrkas~v~  949 (1059)
                      ++..+-.++...|+|+ .+|.+|+-+|-
T Consensus       200 r~a~~~~~e~~~~~v~lp~d~mkgriig  227 (520)
T PRK12704        200 RCAADHVAETTVSVVNLPNDEMKGRIIG  227 (520)
T ss_pred             hhcchhhhhhceeeeecCCchhhcceeC
Confidence            5556666777777888 57788876543

>PRK12705 hypothetical protein; Provisional

Probab=89.95  E-value=21  Score=43.09  Aligned_cols=27  Identities=26%  Similarity=0.314  Sum_probs=18.2

Q ss_pred             cCcccccccCcccceee-cccccccchh
Q 001530          922 ENPAKMKKTESKATVVS-TSDARETSIV  948 (1059)
Q Consensus       922 Nnl~k~P~TES~as~Vn-tADgrkas~v  948 (1059)
                      .++..+-.++...|+|+ .+|.+++-+|
T Consensus       187 qr~a~~~~~e~tvs~v~lp~demkGriI  214 (508)
T PRK12705        187 QRIASETASDLSVSVVPIPSDAMKGRII  214 (508)
T ss_pred             HHhccchhhhheeeeeecCChHhhcccc
Confidence            45556666777777777 4777777654

>PRK00106 hypothetical protein; Provisional

Probab=88.69  E-value=31  Score=42.01  Aligned_cols=27  Identities=26%  Similarity=0.134  Sum_probs=18.1

Q ss_pred             CcccccccCcccceee-cccccccchhh
Q 001530          923 NPAKMKKTESKATVVS-TSDARETSIVL  949 (1059)
Q Consensus       923 nl~k~P~TES~as~Vn-tADgrkas~v~  949 (1059)
                      ++..+-.++...|+|+ .+|.+++-+|-
T Consensus       215 r~a~~~~~e~tvs~v~lp~demkGriIG  242 (535)
T PRK00106        215 RLAGEYVTEQTITTVHLPDDNMKGRIIG  242 (535)
T ss_pred             HhcchhhhhheeeeEEcCChHhhcceeC
Confidence            5556666777777787 47777766543

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=88.37  E-value=16  Score=46.98  Aligned_cols=8  Identities=50%  Similarity=0.667  Sum_probs=4.5

Q ss_pred             HHHHHHHH
Q 001530          442 ASVLEQLC  449 (1059)
Q Consensus       442 a~~~e~lc  449 (1059)
                      |-.+|.||
T Consensus       503 arl~E~l~  510 (1018)
T KOG2002|consen  503 ARLLEELH  510 (1018)
T ss_pred             HHHHHhhh
Confidence            45556655

>KOG3634 consensus Troponin [Cytoskeleton]

Probab=87.67  E-value=3  Score=47.77  Aligned_cols=14  Identities=29%  Similarity=0.351  Sum_probs=9.0

Q ss_pred             CcccCccccccccc
Q 001530          962 SKATGHLEKATEND  975 (1059)
Q Consensus       962 ~Kv~~~L~~~~End  975 (1059)
                      -|.+.+.+++.+++
T Consensus       221 Rkk~~~~~~~~e~~  234 (361)
T KOG3634|consen  221 RKKPLNISELPEND  234 (361)
T ss_pred             HhcccccccCCHHH
Confidence            35566677777666

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=87.49  E-value=20  Score=44.86  Aligned_cols=10  Identities=20%  Similarity=-0.121  Sum_probs=4.2

Q ss_pred             CCccccccee
Q 001530          403 QIMPEFEGFI  412 (1059)
Q Consensus       403 ~~~p~~egf~  412 (1059)
                      +-+-|.=||.
T Consensus       160 gypvv~~g~~  169 (697)
T PF09726_consen  160 GYPVVTLGFG  169 (697)
T ss_pred             CCceeEeecc
Confidence            3344444443

; GO: 0016021 integral to membrane

>PF07946 DUF1682: Protein of unknown function (DUF1682); InterPro: IPR012879 The members of this family are all hypothetical eukaryotic proteins of unknown function

Probab=86.91  E-value=2  Score=48.09  Aligned_cols=17  Identities=41%  Similarity=0.481  Sum_probs=9.5

Q ss_pred             CCCCCCCcccccccccc
Q 001530          616 SLNPELPFISEEDENTD  632 (1059)
Q Consensus       616 ~~~~~l~~IsEEnE~~~  632 (1059)
                      .|-..+-+.||=+|=.+
T Consensus       158 ~Lp~~~~vmsEs~e~~~  174 (321)
T PF07946_consen  158 KLPESLVVMSESNEVTD  174 (321)
T ss_pred             CCCcceEEEEccHhHHH
Confidence            44445556776665544

One member (Q920S6 from SWISSPROT) is described as being an adipocyte-specific protein, but no evidence of this was found.

>PF07946 DUF1682: Protein of unknown function (DUF1682); InterPro: IPR012879 The members of this family are all hypothetical eukaryotic proteins of unknown function

Probab=85.86  E-value=3.4  Score=46.41  Aligned_cols=14  Identities=7%  Similarity=0.007  Sum_probs=6.4

Q ss_pred             CCcccccccccccC
Q 001530          541 GSPIGKFWDRITSN  554 (1059)
Q Consensus       541 ~sp~~k~w~~~~~~  554 (1059)
                      --|+.-||+.|.+.
T Consensus        92 qdl~~~l~~~i~~~  105 (321)
T PF07946_consen   92 QDLFSWLFEFILPF  105 (321)
T ss_pred             cCHHHHHHHHHHhh
Confidence            33444445544443

One member (Q920S6 from SWISSPROT) is described as being an adipocyte-specific protein, but no evidence of this was found.

>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=85.44  E-value=48  Score=40.00  Aligned_cols=8  Identities=25%  Similarity=0.688  Sum_probs=2.9

Q ss_pred             HHHHHHHH
Q 001530          848 ADMAARKR  855 (1059)
Q Consensus       848 aE~eeRKR  855 (1059)
                      .+-+.+++
T Consensus       166 ~e~e~qr~  173 (630)
T KOG0742|consen  166 DELEAQRR  173 (630)
T ss_pred             HHHHHHHH
Confidence            33333333

>KOG2357 consensus Uncharacterized conserved protein [Function unknown]

Probab=82.19  E-value=6.2  Score=46.41  Aligned_cols=27  Identities=26%  Similarity=0.249  Sum_probs=16.9

Q ss_pred             CCCCCCCCcCCCCCCCCcccccccccc
Q 001530          606 SNSSSSDKQGSLNPELPFISEEDENTD  632 (1059)
Q Consensus       606 s~s~~~~~~~~~~~~l~~IsEEnE~~~  632 (1059)
                      |-..+++-|-.|--++..+||=||-.+
T Consensus       252 si~~~p~~~~~lP~~~~vmSE~nEvs~  278 (440)
T KOG2357|consen  252 SIVSSPEGRYNLPESFVVMSESNEVSG  278 (440)
T ss_pred             ccCCCcccccCCCcceeeeecchhhhh
Confidence            444455555556666788888777544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	1059
2zuo_A	861	MVP, major vault protein; repeat domains, protein-	2e-10
2zuo_A	861	MVP, major vault protein; repeat domains, protein-	3e-07
2zuo_A	861	MVP, major vault protein; repeat domains, protein-	4e-06
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	8e-10
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	2e-08
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	6e-08
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	6e-08
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	6e-07
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	7e-07
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	1e-05
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	2e-05
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	2e-04
3lvg_D	190	LCB, clathrin light chain B; SELF assembly, coated	9e-10
3lvg_D	190	LCB, clathrin light chain B; SELF assembly, coated	1e-09
3lvg_D	190	LCB, clathrin light chain B; SELF assembly, coated	3e-08
3lvg_D	190	LCB, clathrin light chain B; SELF assembly, coated	9e-06
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	5e-09
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	4e-08
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	2e-06
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	2e-04
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	3e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-08
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	8e-07
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	3e-06
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	1e-05
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	3e-05
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	2e-04
4f61_I	240	Stathmin-like domain R4; alpha-tubulin, beta-tubul	3e-04
4f61_I	240	Stathmin-like domain R4; alpha-tubulin, beta-tubul	6e-04
1g8x_A	1010	Myosin II heavy chain fused to alpha-actinin 3; mo	3e-04
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	3e-04
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	7e-04
2fxo_A	129	Myosin heavy chain, cardiac muscle beta isoform; c	7e-04

>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861

 Score = 64.4 bits (156), Expect = 2e-10
 Identities = 29/170 (17%), Positives = 59/170 (34%), Gaps = 7/170 (4%)

Query: 782 ITGKRDVKVKALEAAEAAKRLAVEKENERKMKKEALKLERAKLEQENLKQLELQKKKKEE 841
           +     V  +  +A + + +LA+E     +      + +R + E     + +    + E 
Sbjct: 640 VQSVEPVDQRTRDALQRSVQLAIEITTNSQEAAAKHEAQRLEQEARGRLERQKILDQSEA 699

Query: 842 EKKKKLADMAARKRQREEEERKEKERKRKRVMESRRQQQEHEEKLRAKKEEERKKKEADL 901
           EK +K            E     K     R   +R + +    + + K +    + EA+L
Sbjct: 700 EKARKELLELEAMSMAVESTGNAKAEAESRAEAARIEGEGSVLQAKLKAQALAIETEAEL 759

Query: 902 LMVSKD-ETWRDYKRVKDQGEENPAK------MKKTESKATVVSTSDARE 944
             V K  E    Y R + + E + A+       KK +     +     R+
Sbjct: 760 ERVKKVREMELIYARAQLELEVSKAQQLANVEAKKFKEMTEALGPGTIRD 809

>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861

 Score = 54.0 bits (129), Expect = 3e-07
 Identities = 39/235 (16%), Positives = 80/235 (34%), Gaps = 13/235 (5%)

Query: 710 RQAKMSHGPSSFGENCINRVSHNRFTKPKLSEKPSLRKGGPSFADRESKHNNIVS----N 765
           R A  S     F +N    +    F      +        P   D+     N +     +
Sbjct: 580 RGAVASVTFDDFHKNSARIIRMAVFGFEMSEDTGPDGTLLPKARDQAVFPQNGLVVSSVD 639

Query: 766 ITSFIPLVQQKQAAAIITGKRDVKVKALEAAEAAKRLAVEKENERKMKKEALKL------ 819
           + S  P+ Q+ + A   + +  +++       AAK  A   E E + + E  K+      
Sbjct: 640 VQSVEPVDQRTRDALQRSVQLAIEITTNSQEAAAKHEAQRLEQEARGRLERQKILDQSEA 699

Query: 820 ERAKLEQENLKQLELQKKKKEEEKKKKLADMAARKRQREEEERKEKERKRKRVMESRRQQ 879
           E+A+ E   L+ + +  +     K +  +   A + + E    + K + +   +E    +
Sbjct: 700 EKARKELLELEAMSMAVESTGNAKAEAESRAEAARIEGEGSVLQAKLKAQALAIE---TE 756

Query: 880 QEHEEKLRAKKEEERKKKEADLLMVSKDETWRDYKRVKDQGEENPAKMKKTESKA 934
            E E   + ++ E    +    L VSK +   + +  K +              A
Sbjct: 757 AELERVKKVREMELIYARAQLELEVSKAQQLANVEAKKFKEMTEALGPGTIRDLA 811

>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861

 Score = 50.2 bits (119), Expect = 4e-06
 Identities = 26/128 (20%), Positives = 46/128 (35%), Gaps = 9/128 (7%)

Query: 772 LVQQKQAAAIITGKRDVKVKALEAAEAAKRLAVEKENERKMKKEALKLERAKLEQENLKQ 831
           L++ +  +  +    + K +A   AEAA    +E E          KL+   L  E   +
Sbjct: 706 LLELEAMSMAVESTGNAKAEAESRAEAA---RIEGEGS----VLQAKLKAQALAIETEAE 758

Query: 832 LELQKKKKEEEKKKKLADMAARKRQREEEERKEKERKRKRVMESRRQQQEHEEKLRAKKE 891
           LE  KK +E E     A         + ++    E K+ + M          +   A  E
Sbjct: 759 LERVKKVREMELIYARA--QLELEVSKAQQLANVEAKKFKEMTEALGPGTIRDLAVAGPE 816

Query: 892 EERKKKEA 899
            + K  ++
Sbjct: 817 MQVKLLQS 824

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 62.0 bits (151), Expect = 8e-10
 Identities = 25/113 (22%), Positives = 45/113 (39%), Gaps = 1/113 (0%)

Query: 789  KVKALEAAEAAKRLAVEKENERKMKKEALKLERAKLEQENLKQLELQKKKKEEEKKKKLA 848
            + + L +     R++ E+E +    +     E     ++ L Q + +KK  EE   K   
Sbjct: 961  ETEKLRSDVERLRMS-EEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKH 1019

Query: 849  DMAARKRQREEEERKEKERKRKRVMESRRQQQEHEEKLRAKKEEERKKKEADL 901
            +      + +E+    K  K +       Q +E  E +  K  EE K+ E DL
Sbjct: 1020 ETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEKKLVEETKQLELDL 1072

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 57.8 bits (140), Expect = 2e-08
 Identities = 19/169 (11%), Positives = 59/169 (34%), Gaps = 12/169 (7%)

Query: 776  KQAAAIITGKRDVKVKALEAAEAAKRLAVEKENERKMKKEALKLE------RAKLEQENL 829
            +        +  ++       +   R  + + +  +  K  + L+       AK E + L
Sbjct: 850  RGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKL 909

Query: 830  KQLELQKKKKEEEKKK---KLADMAARKRQREEEERKEKERKRKRVMESRRQQQEHEEKL 886
            K      ++ ++       K+  +  +  ++ +E +   E+     +    + ++    +
Sbjct: 910  KIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDV 969

Query: 887  RAKKEEERKKKEADLLMVSKDETWRDYKRVKDQGEENPAKMKKTESKAT 935
               +  E + K A   ++S  E   +  +++ +  +   + K  E  A 
Sbjct: 970  ERLRMSEEEAKNATNRVLSLQE---EIAKLRKELHQTQTEKKTIEEWAD 1015

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 55.9 bits (135), Expect = 6e-08
 Identities = 26/191 (13%), Positives = 66/191 (34%), Gaps = 20/191 (10%)

Query: 775  QKQAAAIITGKRDVKVKALEAA-----EAAKRLAVEKENERKMKKEALKLER--AKLEQE 827
             +   AI+  +   +    +         A+ +   K+    ++ + ++L+R   +  +E
Sbjct: 884  HRTLKAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKE 943

Query: 828  N------LKQLELQKKKKEEEKKKKLADMAARKRQREEEERKEKERKRKRVMESRRQQQE 881
                   +  LE+    + E+ +  +  +     +  EEE K    +   + E   + ++
Sbjct: 944  YKSLLEKMNNLEITYSTETEKLRSDVERL-----RMSEEEAKNATNRVLSLQEEIAKLRK 998

Query: 882  HEEKLRAKKE--EERKKKEADLLMVSKDETWRDYKRVKDQGEENPAKMKKTESKATVVST 939
               + + +K+  EE   K          E       +K + EE   ++     + T    
Sbjct: 999  ELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETME 1058

Query: 940  SDARETSIVLQ 950
                E +  L+
Sbjct: 1059 KKLVEETKQLE 1069

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 55.9 bits (135), Expect = 6e-08
 Identities = 24/174 (13%), Positives = 63/174 (36%), Gaps = 12/174 (6%)

Query: 772  LVQQKQAAAIITGKRDVKVKALEAAEAAKRLAVEKENERKM-KKE--ALKLERAKLEQEN 828
            ++++ ++  I    R    +          + ++    R M K+E   LK+E   +E+  
Sbjct: 861  MLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSVERYK 920

Query: 829  LKQLELQKKKKE-----EEKKKKLADMAARKRQREEEERKEKERKRKRVMESRRQQQEHE 883
               + L+ K  +     +E+ K+   +  +    E     E E+ R  V   R  ++E +
Sbjct: 921  KLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAK 980

Query: 884  EKLRAKKEEERKKKEADLLMVSKDETWRD----YKRVKDQGEENPAKMKKTESK 933
                     + +  +    +       +       + K + E+  +++K+  + 
Sbjct: 981  NATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTL 1034

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 52.8 bits (127), Expect = 6e-07
 Identities = 22/172 (12%), Positives = 65/172 (37%), Gaps = 13/172 (7%)

Query: 774  QQKQAAAIITGKRDVKVKALEA--AEAAKRLAVEKENERKMKKEALKLERAK-LEQENLK 830
            + K  A  +   + + +  LE    +  +++  + +  + + ++   LE     E E L+
Sbjct: 908  KLKIEARSVERYKKLHIG-LENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLR 966

Query: 831  QLELQKKKKEEEKKKKLADMAAR----KRQREEEERKEKERKR-----KRVMESRRQQQE 881
                + +  EEE K     + +      + R+E  + + E+K       +      Q   
Sbjct: 967  SDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVS 1026

Query: 882  HEEKLRAKKEEERKKKEADLLMVSKDETWRDYKRVKDQGEENPAKMKKTESK 933
              ++     + E+++    +   +K+ T    K++ ++ ++    +     +
Sbjct: 1027 ELKEQNTLLKTEKEELNRRIHDQAKEITETMEKKLVEETKQLELDLNDERLR 1078

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 52.4 bits (126), Expect = 7e-07
 Identities = 17/154 (11%), Positives = 52/154 (33%), Gaps = 6/154 (3%)

Query: 786 RDVKVKALEAAEAAKRLAVEKENERKMKKEALKLERAKLEQENLKQLELQKKKKEEEKKK 845
           + ++   +      +   V  + +  +++    + +  +     +    +  K     + 
Sbjct: 836 QCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQC 895

Query: 846 KLADMAARKRQRE---EEERKEKERKRKRVMESRR---QQQEHEEKLRAKKEEERKKKEA 899
               M A++  ++   E    E+ +K    +E++    Q++  E+    K   E+     
Sbjct: 896 CYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLE 955

Query: 900 DLLMVSKDETWRDYKRVKDQGEENPAKMKKTESK 933
                  ++   D +R++   EE      +  S 
Sbjct: 956 ITYSTETEKLRSDVERLRMSEEEAKNATNRVLSL 989

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 48.2 bits (115), Expect = 1e-05
 Identities = 19/172 (11%), Positives = 53/172 (30%), Gaps = 5/172 (2%)

Query: 775  QKQAAAIITGKRDVKVKALEAAEAAKRLAVEKENERKMKKEALKLERAKLEQENLKQLEL 834
            +    A+    R   V+        +  ++  +   +     +   R       L+    
Sbjct: 839  RDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYR 898

Query: 835  QKKKKEEEKKKKLADMAARKRQREEEERKEKERKRKRVMESRRQQQEHEEKLRAKKEEER 894
            +   K E KK K   + AR  +R ++     E K  ++     +Q +  + L  K     
Sbjct: 899  RMMAKRELKKLK---IEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLE 955

Query: 895  KKKEADLLMVSKDETWRDYKRVKDQGEENPAKMKKTESKATVVSTSDARETS 946
                 +   +  D      +  +++ +    ++   + +   +     +  +
Sbjct: 956  ITYSTETEKLRSDVE--RLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQT 1005

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 48.2 bits (115), Expect = 2e-05
 Identities = 17/114 (14%), Positives = 46/114 (40%), Gaps = 14/114 (12%)

Query: 785  KRDVKVKALEAAEAAKRLAVEKENERKMKKEALKLERAKLEQENLKQLELQKKKKEEEKK 844
                +V +L+   A  R  + +      +K+ ++    K + E  +QL  + K++    K
Sbjct: 981  NATNRVLSLQEEIAKLRKELHQTQT---EKKTIEEWADKYKHE-TEQLVSELKEQNTLLK 1036

Query: 845  KKLADMAARKRQREEEERKEKERKRKRVMESRRQQQEHEEKLRAKKEEERKKKE 898
             +  ++    R+  ++ ++  E          ++  E  ++L     +ER + +
Sbjct: 1037 TEKEEL---NRRIHDQAKEITE-------TMEKKLVEETKQLELDLNDERLRYQ 1080

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 44.7 bits (106), Expect = 2e-04
 Identities = 21/157 (13%), Positives = 51/157 (32%), Gaps = 9/157 (5%)

Query: 775 QKQAAAIITGKRDVKVKALEAAEAAKRLAVEKENERKMKKEALKLERAKLEQENLKQLEL 834
           ++  AAII  K     +     +  + +       + + +  L   + ++     K + +
Sbjct: 814 RRTRAAIIIQKF---QRMYVVRKRYQCMRDATIALQALLRGYLVRNKYQMMLREHKSIII 870

Query: 835 QKKKKEEEKKKKLADM--AARKRQREEEERKEKERKRKRVMESRRQQQEHEEKLRAKKEE 892
           QK  +    +        A    Q        K   +K  +E+R    E  +KL      
Sbjct: 871 QKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSV--ERYKKL--HIGL 926

Query: 893 ERKKKEADLLMVSKDETWRDYKRVKDQGEENPAKMKK 929
           E K  +    +  +++ ++      +  E   +   +
Sbjct: 927 ENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETE 963

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190

 Score = 58.2 bits (140), Expect = 9e-10
 Identities = 18/96 (18%), Positives = 40/96 (41%), Gaps = 19/96 (19%)

Query: 798 AAKRLAVEKENERKMKKEALKLERAKLEQENLKQLELQKKKKEEEKKKKLADMAARKRQR 857
            A RL  E E+ RK ++E    +R +L++ +       K  ++E ++K   D+    +++
Sbjct: 76  QADRLTQEPESIRKWREE----QRKRLQELD----AASKVMEQEWREKAKKDLEEWNQRQ 127

Query: 858 EEEERKEKERKRKRVMESRRQQQEHEEKLRAKKEEE 893
            E+  K K   R             ++    + + +
Sbjct: 128 SEQVEKNKINNR-----------IADKAFYQQPDAD 152

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190

 Score = 58.2 bits (140), Expect = 1e-09
 Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 17/84 (20%)

Query: 850 MAARKRQREEEE--RKEKERKRKRVMESRRQQQEHEEKLRAKKEEERKKKEADLLMVSKD 907
           +A   R  +E E  RK +E +RKR+       QE +   +  ++E R+K + DL      
Sbjct: 74  IAQADRLTQEPESIRKWREEQRKRL-------QELDAASKVMEQEWREKAKKDL------ 120

Query: 908 ETWRDYKRVKDQGEENPAKMKKTE 931
           E W   +R  +Q E+N    +  +
Sbjct: 121 EEW--NQRQSEQVEKNKINNRIAD 142

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190

 Score = 54.0 bits (129), Expect = 3e-08
 Identities = 17/84 (20%), Positives = 44/84 (52%), Gaps = 8/84 (9%)

Query: 820 ERAKLEQENLKQLELQKKKKEEEKKKKLADMAARKRQREEEERKEKERKRKRVMESRRQQ 879
           +R   E E+++       K  EE++K+L ++ A  +  E+E R++ ++  +   + + +Q
Sbjct: 78  DRLTQEPESIR-------KWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQ 130

Query: 880 QE-HEEKLRAKKEEERKKKEADLL 902
            E ++   R   +   ++ +AD++
Sbjct: 131 VEKNKINNRIADKAFYQQPDADII 154

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190

 Score = 46.7 bits (110), Expect = 9e-06
 Identities = 15/70 (21%), Positives = 32/70 (45%), Gaps = 12/70 (17%)

Query: 797 EAAKRLAVEKENERKMKKEALKLERAKLEQENLKQLELQKKKKEEEKKKKLADMAARKRQ 856
           E  KRL  E +   K+ ++  + E+AK      K LE   +++ E+ +K   +     R 
Sbjct: 93  EQRKRLQ-ELDAASKVMEQEWR-EKAK------KDLEEWNQRQSEQVEKNKINN----RI 140

Query: 857 REEEERKEKE 866
            ++   ++ +
Sbjct: 141 ADKAFYQQPD 150

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 59.5 bits (144), Expect = 5e-09
 Identities = 48/249 (19%), Positives = 94/249 (37%), Gaps = 18/249 (7%)

Query: 771  PLVQQKQAAAIITGKRDVKVKALEAAEAAKRLAVEKENERKMKKEALKLERAKLEQENLK 830
            PL++  +    +  K +   +  E  + A+    E E +     E   L + KL+ E   
Sbjct: 848  PLLKVTRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETEL 907

Query: 831  QLELQKK-----KKEEEKKKKLADMAARKRQREEEERKEKERKRK--RVMESRRQQQEHE 883
              E ++       K++E ++ L +M AR  + EE  ++ +  K+K  + M    +Q E E
Sbjct: 908  YAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEE 967

Query: 884  EKLRAKKEEERKKKEADL------LMVSKDETWRDYKRVKDQGEENPAKMKKTESKATVV 937
            E  R K + E+   +  +      +++ +D+  +  K  K   E           +    
Sbjct: 968  EAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKA 1027

Query: 938  STSDARETSIVLQVSEPSTDCGDKSKATGHLEKA-----TENDLVTNQNQEPSYDISPYK 992
                  +      +SE       + K+   LEK       E+  +  Q  E    I+  K
Sbjct: 1028 KNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELK 1087

Query: 993  DSDNEEEED 1001
                ++EE+
Sbjct: 1088 AQLAKKEEE 1096

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 56.8 bits (137), Expect = 4e-08
 Identities = 26/131 (19%), Positives = 57/131 (43%), Gaps = 8/131 (6%)

Query: 785  KRDVKVKALEAA--EAAKRLAVEKENERKMKKEALKLE------RAKLEQENLKQLELQK 836
            K   + K LE    +    LA E+E  + + K   K E        +L++E   + EL+K
Sbjct: 1001 KLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEK 1060

Query: 837  KKKEEEKKKKLADMAARKRQREEEERKEKERKRKRVMESRRQQQEHEEKLRAKKEEERKK 896
             K++ E +         + Q +  E K +  K++  +++   + E E   +    ++ ++
Sbjct: 1061 IKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRE 1120

Query: 897  KEADLLMVSKD 907
             E+ +  + +D
Sbjct: 1121 LESHISDLQED 1131

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 51.4 bits (123), Expect = 2e-06
 Identities = 38/226 (16%), Positives = 94/226 (41%), Gaps = 14/226 (6%)

Query: 791  KALEAAEAAKRLAVEKENERKMKKEALKLERAKLEQENLKQLELQKKKKEEEKKKKLADM 850
            + LE  EAA++    ++     K + ++ +   +E +N K L  ++K  EE       ++
Sbjct: 962  EQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNK-LTKERKLLEERVSDLTTNL 1020

Query: 851  AARKRQREEEERKEKERKRKRVMESRRQQQEHEEKLRAKKEEERKKKEADL------LMV 904
            A  + + +    K K  K + ++     + + EEK R + E+ ++K E +       +  
Sbjct: 1021 AEEEEKAKNLT-KLKN-KHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAE 1078

Query: 905  SKDETWRDYKRVKDQGEENPAKMKKTESKATVVSTSDARETSIVLQVSEPSTDCGDKSKA 964
             + +      ++  + EE  A + + E + +  + +  +   +   +S+   D   +  A
Sbjct: 1079 LQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAA 1138

Query: 965  TGHLEKA-----TENDLVTNQNQEPSYDISPYKDSDNEEEEDDDDR 1005
                EK       E + +  + ++     +  ++    + +DDDD+
Sbjct: 1139 RNKAEKQKRDLSEELEALKTELEDTLDTTATQQELRGSDYKDDDDK 1184

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 44.4 bits (105), Expect = 2e-04
 Identities = 36/135 (26%), Positives = 59/135 (43%), Gaps = 29/135 (21%)

Query: 789  KVKALEAAEAA-----KRLAVEKENERKMKKEALKLERAKLEQEN-------------LK 830
            K K L   +         L V  + E K ++E  K++R KLE E+             + 
Sbjct: 1026 KAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKR-KLEGESSDLHEQIAELQAQIA 1084

Query: 831  QLELQKKKKEEEKKKKLADMAARKRQREEEERKEKERKRKRVMESR----RQQQEHEEKL 886
            +L+ Q  KKEEE +      AA  R  +E  +K    K+ R +ES     ++  E E+  
Sbjct: 1085 ELKAQLAKKEEELQ------AALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAA 1138

Query: 887  RAKKEEERKKKEADL 901
            R K E++++    +L
Sbjct: 1139 RNKAEKQKRDLSEEL 1153

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 43.7 bits (103), Expect = 3e-04
 Identities = 26/148 (17%), Positives = 58/148 (39%), Gaps = 22/148 (14%)

Query: 774  QQKQAAAIITGKRDVKVKALEAAEAAKRLAVEK------------------ENERKMKKE 815
            + +   + +  +   + K+ +  E  KR    +                  + +   K+E
Sbjct: 1036 KHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEE 1095

Query: 816  ALKLERAKLEQENLKQLELQKKKKE-EEKKKKL-ADMAARKRQREEEERKEKERKRKRVM 873
             L+   A+LE E  ++    KK +E E     L  D+ + K  R + E+++++   +  +
Sbjct: 1096 ELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEE--L 1153

Query: 874  ESRRQQQEHEEKLRAKKEEERKKKEADL 901
            E+ + + E      A ++E R     D 
Sbjct: 1154 EALKTELEDTLDTTATQQELRGSDYKDD 1181

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 57.2 bits (137), Expect = 3e-08
 Identities = 100/683 (14%), Positives = 186/683 (27%), Gaps = 230/683 (33%)

Query: 265 HHNMKVES-----QSSDKLQVDEDKSNSKERDSTHFSFVQELEVPLVSSFNNQGTNSKYC 319
           HH+M  E+     Q  D L V ED             FV   +   V        + +  
Sbjct: 4   HHHMDFETGEHQYQYKDILSVFEDA------------FVDNFDCKDVQDMPKSILSKEEI 51

Query: 320 S--VEEGAVSNSTRAILDP--DKQ-----RAMGGNEALLHLSEKNEQWNSEHL------- 363
              +      + T  +      KQ     + +   E L      N ++    +       
Sbjct: 52  DHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVE--EVL----RINYKFLMSPIKTEQRQP 105

Query: 364 SFDEIGMQEGKCHLEGNGRA-SQCSVGSPQ--RKLVDLIGSDQIMPEFEGFILETDNGHS 420
           S       E +  L  + +  ++ +V   Q   KL   +   +  P  +  +++   G  
Sbjct: 106 SMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELR--PA-KNVLID---GVL 159

Query: 421 GTAGEDINFDKLDLPKTTIERASVLEQLCKSACMNTPLSHFF--------------TTYK 466
           G +G           KT          +    C++  +                      
Sbjct: 160 G-SG-----------KTW---------VALDVCLSYKVQCKMDFKIFWLNLKNCNSPETV 198

Query: 467 LHQAPNLCQSVPNRLLECIDLRNNPSLNDNIVKQLKASYSCFDEEADHAYQGRSYSDCSL 526
           L     L   +        D  +N  L  + ++           E     + + Y +C L
Sbjct: 199 LEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQ----------AELRRLLKSKPYENCLL 248

Query: 527 F----SSTQPASEIRKPFGSPIGKFWD---RI---TSNSASSEKRGGSNPDLPCISEENE 576
                 +    ++    F        +   +I   T     ++    +      +   + 
Sbjct: 249 VLLNVQN----AKAWNAF--------NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSM 296

Query: 577 --NTDEVVNVFQEGISLEVA---------SP-----VGEL-------WD-WKKSNSSSSD 612
               DEV ++  + +              +P     + E        WD WK  N     
Sbjct: 297 TLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLT 356

Query: 613 K--QGSLNPELPFISEEDENTDMVTGVHQGINLEVMPSSVKREPLADITKN------PNL 664
              + SLN  L    E  E   M         L V P S        I          ++
Sbjct: 357 TIIESSLN-VL----EPAEYRKMFD------RLSVFPPSAH------IPTILLSLIWFDV 399

Query: 665 TGSVPKTDV--FAARSSLESVKTEFSFS-----RTVRAK-----QKH---VEHISNKKNR 709
             S     V      S +E    E + S       ++ K       H   V+H +  K  
Sbjct: 400 IKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTF 459

Query: 710 ----------------------RQAKMSHGPSSFGENCINRVSHN-RFTKPKLSEKPS-- 744
                                 +  +     + F       V  + RF + K+    +  
Sbjct: 460 DSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLF-----RMVFLDFRFLEQKIRHDSTAW 514

Query: 745 ------------LRKGGPSFADRESKHNNIVSNITSFIPLVQQKQAAAIITGK-RDVKVK 791
                       L+   P   D + K+  +V+ I  F+P    K    +I  K  D+   
Sbjct: 515 NASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLP----KIEENLICSKYTDLLRI 570

Query: 792 ALEAAEAAKRLAVEKENERKMKK 814
           AL A +     A+ +E  +++++
Sbjct: 571 ALMAEDE----AIFEEAHKQVQR 589

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 56.0 bits (134), Expect = 6e-08
 Identities = 78/551 (14%), Positives = 154/551 (27%), Gaps = 146/551 (26%)

Query: 567  DLPC--ISEENEN---TDEVVNVFQEGISLEVASPVGELWDWKKSNSSSSDK--QGSLNP 619
            +  C  + +  ++    +E+ ++     ++     +   W           K  +  L  
Sbjct: 32   NFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRL--FWTLLSKQEEMVQKFVEEVLRI 89

Query: 620  ELPF----ISEEDENTDMVTGVH-------QGINLEVMPSSVKREP--------LADITK 660
               F    I  E     M+T ++          N      +V R          L ++  
Sbjct: 90   NYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRP 149

Query: 661  NPNLT-----GSVPKTDVFAARSSL-ESVKTEFSFS---RTVRAKQKHVEHISNKKN--R 709
              N+      GS  KT   A    L   V+ +  F      ++        +   +    
Sbjct: 150  AKNVLIDGVLGS-GKT-WVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLY 207

Query: 710  RQAKMSHGPSSFGENCINRVSHNRFTKPKLSEKPSLRKGGPSFADRESKHNN---IVSNI 766
            +        S    N   R+          S +  LR+       +   + N   ++ N 
Sbjct: 208  QIDPNWTSRSDHSSNIKLRIH---------SIQAELRR---LLKSK--PYENCLLVLLN- 252

Query: 767  TSFIPLVQQKQAAA---------IITGKRDVKVKALEAAEAAKRLAVEKENERKMKKEAL 817
                  VQ  +A           + T  R  +V    +A     ++++  +      E  
Sbjct: 253  ------VQNAKAWNAFNLSCKILLTT--RFKQVTDFLSAATTTHISLDHHSMTLTPDEVK 304

Query: 818  KLERAKLEQENLKQLELQKKKKEEEKKK----KLADMAARKRQ---REEEERKEKERKRK 870
             L    L    LK L+ + +    E       +L+ +A   R      +  +     K  
Sbjct: 305  SL----L----LKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLT 356

Query: 871  RVMESRRQQQEHEEKLRAKKEEERKKKEADLLMVSKDET---------WRDYKRVKDQGE 921
             ++ES          L   +  E +K    L +               W D  +      
Sbjct: 357  TIIES---------SLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIK-----S 402

Query: 922  ENPAKMKKTESKATVVSTSDARETSIVLQVSEPSTDCGDKSKATGHLEKATENDLVTNQN 981
            +    + K    + V      +E++I +           + K     E A    +V + N
Sbjct: 403  DVMVVVNKLHKYSLVE--KQPKESTISIP------SIYLELKVKLENEYALHRSIVDHYN 454

Query: 982  QEPSY---DISP-----Y---------KDSDNEEEED-------DDDRLNTKFIPSWASK 1017
               ++   D+ P     Y         K+ ++ E          D   L  K      + 
Sbjct: 455  IPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAW 514

Query: 1018 RASALIIPSLL 1028
             AS  I+ +L 
Sbjct: 515  NASGSILNTLQ 525

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A* Length = 592

 Score = 52.3 bits (124), Expect = 8e-07
 Identities = 25/130 (19%), Positives = 59/130 (45%)

Query: 773 VQQKQAAAIITGKRDVKVKALEAAEAAKRLAVEKENERKMKKEALKLERAKLEQENLKQL 832
             +K   A    +  +K K        +      E E++++ E +K E A+   + L ++
Sbjct: 450 EPRKGIQAEEILQTYLKSKESMTDAILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEM 509

Query: 833 ELQKKKKEEEKKKKLADMAARKRQREEEERKEKERKRKRVMESRRQQQEHEEKLRAKKEE 892
           + + ++  E+K++   +   +  ++ E +R +  ++++R +  + Q+QE   K   +KE 
Sbjct: 510 QRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQEQEQLLKEGFQKES 569

Query: 893 ERKKKEADLL 902
              K E   L
Sbjct: 570 RIMKNEIQDL 579

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A* Length = 592

 Score = 50.0 bits (118), Expect = 3e-06
 Identities = 25/114 (21%), Positives = 55/114 (48%), Gaps = 4/114 (3%)

Query: 772 LVQQKQAAAIITGKRDVKVKALEAAEAAKRLAVEKENERKMKKEALKLERAKLEQENLKQ 831
           ++Q  Q       + +V+    E+A+A+ ++  E + + +   E    ++ +  QE+LKQ
Sbjct: 475 ILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMME----QKERSYQEHLKQ 530

Query: 832 LELQKKKKEEEKKKKLADMAARKRQREEEERKEKERKRKRVMESRRQQQEHEEK 885
           L  + +    +  K+     A K Q +E+  KE  +K  R+M++  Q  + + +
Sbjct: 531 LTEKMENDRVQLLKEQERTLALKLQEQEQLLKEGFQKESRIMKNEIQDLQTKMR 584

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A* Length = 592

 Score = 48.4 bits (114), Expect = 1e-05
 Identities = 26/126 (20%), Positives = 54/126 (42%), Gaps = 1/126 (0%)

Query: 805 EKENERKMKKEALKLERAKLEQENLKQLELQKKKKEEEKKKKLADMAARKRQREEEERKE 864
           E+  +    +E L+      E      L+  +   E+EK+ ++  + A   Q   +   E
Sbjct: 449 EEPRKGIQAEEILQTYLKSKESMTDAILQTDQTLTEKEKEIEVERVKAESAQASAKMLHE 508

Query: 865 KERKRKRVMESR-RQQQEHEEKLRAKKEEERKKKEADLLMVSKDETWRDYKRVKDQGEEN 923
            +RK +++ME + R  QEH ++L  K E +R +   +       +     + +K+  ++ 
Sbjct: 509 MQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQEQEQLLKEGFQKE 568

Query: 924 PAKMKK 929
              MK 
Sbjct: 569 SRIMKN 574

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A* Length = 592

 Score = 47.3 bits (111), Expect = 3e-05
 Identities = 17/129 (13%), Positives = 52/129 (40%), Gaps = 5/129 (3%)

Query: 773 VQQKQAAAIITGKRDVKVKALEAAEAAKRLAVEKENERKMKKEALKLERAKLEQ---ENL 829
           +Q ++        ++    A+   +       ++    ++K E+ +     L +   +N 
Sbjct: 455 IQAEEILQTYLKSKESMTDAILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNE 514

Query: 830 KQLELQKKKKEEEKKKKLADMAARKRQREEEERKEKERKRKRVMESRRQQQEHEEKLRAK 889
           + +E +++  +E  K+    M   + Q  +E  +E+    K   + +  ++  +++ R  
Sbjct: 515 QMMEQKERSYQEHLKQLTEKMENDRVQLLKE--QERTLALKLQEQEQLLKEGFQKESRIM 572

Query: 890 KEEERKKKE 898
           K E +  + 
Sbjct: 573 KNEIQDLQT 581

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A* Length = 592

 Score = 44.6 bits (104), Expect = 2e-04
 Identities = 23/166 (13%), Positives = 62/166 (37%), Gaps = 12/166 (7%)

Query: 775 QKQAAAIITGKRDVKVKALEAAEAAKRLAVEKENERKMKKEALKLERAKLEQENLKQLEL 834
            ++   +     +   K ++A E  +     KE+      +  +    K ++  +++++ 
Sbjct: 437 VQKLQDLKKKYYEEPRKGIQAEEILQTYLKSKESMTDAILQTDQTLTEKEKEIEVERVKA 496

Query: 835 QKKKKEEEKKKKLADMAARKRQREEEERKEKERKRKRVMESRRQQ--QEHEEKLRAKKEE 892
           +  +   +   ++     +  +++E   +E  ++    ME+ R Q  +E E  L  K +E
Sbjct: 497 ESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQE 556

Query: 893 ERKKKEADLLMVSKDETWRDYKRVKDQGEENPAKMKKTESKATVVS 938
           + +  +      S+            + E    + K    KA  +S
Sbjct: 557 QEQLLKEGFQKESRIM----------KNEIQDLQTKMRRRKACTIS 592

>4f61_I Stathmin-like domain R4; alpha-tubulin, beta-tubulin, GTPase, microtubule, RB3, stath tubulin, cell cycle; HET: GTP GDP; 4.17A {Artificial gene} Length = 240

 Score = 43.0 bits (100), Expect = 3e-04
 Identities = 29/163 (17%), Positives = 72/163 (44%), Gaps = 3/163 (1%)

Query: 774 QQKQAAAIITGKRDVKVKALEAAEAAKRLAVEKENERKMKKEALKLERAKLEQENLKQLE 833
            +++  ++   ++ ++            L      +R+ ++E ++    +         E
Sbjct: 37  PRRRDPSLEEIQKKLEAAEERRKYQEAELLKHLAEKREHEREVIQRAIEENNNWIKMAKE 96

Query: 834 LQKKKKEEEKKKKLADMAARKRQREEEERKEKERKRKRVMESRRQQQEHEEKLRAKK--- 890
              +K E  K+ + A  AA   + +E+++  +E +++ + E+    +  +EKL  K    
Sbjct: 97  KLAQKMESNKENREAHFAAMLERLQEKDKHAEEVRQRAIEENNNWIKMAKEKLAQKMESN 156

Query: 891 EEERKKKEADLLMVSKDETWRDYKRVKDQGEENPAKMKKTESK 933
           +E RK +EA+LL    ++   + + ++   EEN   +K  + K
Sbjct: 157 KENRKYQEAELLKHLAEKREHEREVIQRAIEENNNWIKMAKEK 199

>4f61_I Stathmin-like domain R4; alpha-tubulin, beta-tubulin, GTPase, microtubule, RB3, stath tubulin, cell cycle; HET: GTP GDP; 4.17A {Artificial gene} Length = 240

 Score = 41.5 bits (96), Expect = 6e-04
 Identities = 28/128 (21%), Positives = 55/128 (42%), Gaps = 1/128 (0%)

Query: 774 QQKQAAAIITGKRDVKVKALEAAEAAKRLAVEKENERKMKKEALKLERAKLEQENLKQLE 833
           ++ + A        ++ K   A E  +R   E  N  KM KE L  ++ +  +EN K  E
Sbjct: 106 KENREAHFAAMLERLQEKDKHAEEVRQRAIEENNNWIKMAKEKLA-QKMESNKENRKYQE 164

Query: 834 LQKKKKEEEKKKKLADMAARKRQREEEERKEKERKRKRVMESRRQQQEHEEKLRAKKEEE 893
            +  K   EK++   ++  R  +      K  + K  + MES ++ +E       ++ +E
Sbjct: 165 AELLKHLAEKREHEREVIQRAIEENNNWIKMAKEKLAQKMESNKENREAHFAAMLERLQE 224

Query: 894 RKKKEADL 901
           + K   ++
Sbjct: 225 KDKHAEEV 232

>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010

 Score = 43.9 bits (104), Expect = 3e-04
 Identities = 18/133 (13%), Positives = 41/133 (30%), Gaps = 25/133 (18%)

Query: 774  QQKQAAAIITGKRDVKVKALEAAEAAKRLAVEKE---------NERKMKKEALKLERAKL 824
            ++++  A++  K +  +K LE     K + +              +    EA   E   L
Sbjct: 879  KRQKKIAVLLQKYNRILKKLENWATTKSVYLGSNETGDSITAVQAKLKNLEAFDGECQSL 938

Query: 825  EQENLKQLELQKKKKEEEKKKKLADMAARK---------------RQREEEERKEKERKR 869
            E ++   L     +  E     + ++  RK                  +     E E + 
Sbjct: 939  EGQSNSDLLSILAQLTELNYNGVPELTERKDTFFAQQWTGVKSSAETYKNTLLAELE-RL 997

Query: 870  KRVMESRRQQQEH 882
            +++ +       H
Sbjct: 998  QKIEDLHHHHHHH 1010

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C* Length = 3245

 Score = 44.1 bits (104), Expect = 3e-04
 Identities = 26/200 (13%), Positives = 73/200 (36%), Gaps = 4/200 (2%)

Query: 734  FTKPKLSEKPSLRKGGPSFADRESKHNNIVSNITSFIPLVQQKQAAAIITGKRDVKVKA- 792
            +  P +  + +   G    A   S  + +VS++      + +     +    R   V   
Sbjct: 1836 YIAPPVFIQEAEIMGNNLMAIPPSHRDAVVSSLVYIHQTIGEANIRLLKRQGRQNYVTPR 1895

Query: 793  --LEAAEAAKRLAVEKENERKMKKEALKLERAKLEQENLKQLELQKKKKEEEKKKKLADM 850
              L+       L  EK ++ + ++  L +   KL     +  +LQ    ++ ++  + + 
Sbjct: 1896 HYLDFINQVVLLINEKRDQLEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQKNRELDVKNE 1955

Query: 851  AARKRQRE-EEERKEKERKRKRVMESRRQQQEHEEKLRAKKEEERKKKEADLLMVSKDET 909
             A ++ ++  ++++  E K+K   E + Q     +++  +K +     E         E 
Sbjct: 1956 QANQKLKQMVQDQQAAEIKQKDARELQVQLDVRNKEIAVQKVKAYADLEKAEPTGPLREE 2015

Query: 910  WRDYKRVKDQGEENPAKMKK 929
                +   ++ +    ++  
Sbjct: 2016 VEQLENAANELKLKQDEIVA 2035

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} Length = 427

 Score = 42.4 bits (99), Expect = 7e-04
 Identities = 20/127 (15%), Positives = 53/127 (41%), Gaps = 9/127 (7%)

Query: 774 QQKQAAAIITGKRDVKVKALEAAEAAKRLAVEKENERKMKKE-----ALKLERAKLEQEN 828
           ++          +   ++    A+  + L   ++ E +M++        K    K  ++ 
Sbjct: 304 EEMGFKDTDPDSKPFSLQETYEAKRNEFLGELQKKEEEMRQMFVQRVKEKEAELKEAEKE 363

Query: 829 LKQLELQKKKKEEEKKKKLADMAARKRQREEEERKEKERKRKRVMESRRQQQEHEEKLRA 888
           L +   + KK  +++KKKL D    K++  ++E    ++++      + Q  +       
Sbjct: 364 LHEKFDRLKKLHQDEKKKLED----KKKSLDDEVNAFKQRKTAAELLQSQGSQAGGSQTL 419

Query: 889 KKEEERK 895
           K+++E+K
Sbjct: 420 KRDKEKK 426

>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A Length = 129

 Score = 39.9 bits (93), Expect = 7e-04
 Identities = 29/120 (24%), Positives = 58/120 (48%), Gaps = 11/120 (9%)

Query: 793 LEAAEAAKRLAVEKENERKMKKEALKLERAKLEQENLKQLELQKKKKEEEKKKKLADMAA 852
           L++AE  K +A  KE   ++K+   K E  +      K+LE +     +EK      + A
Sbjct: 6   LKSAEREKEMASMKEEFTRLKEALEKSEARR------KELEEKMVSLLQEKNDLQLQVQA 59

Query: 853 RKRQ-REEEERKEKERKRKRVMESR----RQQQEHEEKLRAKKEEERKKKEADLLMVSKD 907
            +    + EER ++  K K  +E++     ++ E EE++ A+   +++K E +   + +D
Sbjct: 60  EQDNLADAEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRD 119

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	1059
d1f5na1	300	a.114.1.1 (A:284-583) Interferon-induced guanylate	5e-08
d1f5na1	300	a.114.1.1 (A:284-583) Interferon-induced guanylate	3e-06
d1f5na1	300	a.114.1.1 (A:284-583) Interferon-induced guanylate	9e-06
d1f5na1	300	a.114.1.1 (A:284-583) Interferon-induced guanylate	1e-04
d2es4d1	280	a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB)	1e-07
d2es4d1	280	a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB)	3e-07
d2es4d1	280	a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB)	4e-06
d2es4d1	280	a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB)	6e-04
d1sa0e_	138	a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus	1e-06
d1sa0e_	138	a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus	7e-06
d1sa0e_	138	a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus	7e-05
d1sa0e_	138	a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus	0.001

>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 300

class: All alpha proteins
fold: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
superfamily: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
family: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
domain: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.2 bits (127), Expect = 5e-08
 Identities = 22/134 (16%), Positives = 58/134 (43%), Gaps = 5/134 (3%)

Query: 774 QQKQAAAIITGKRDVKVKALEAAEAAKRLAVEKENERKMKKEALKLERAKLEQENLKQLE 833
           +  +         ++    L++ E+     ++ +     K++ +++ER K E        
Sbjct: 163 KYYEEPRKGIQAEEILQTYLKSKESMTDAILQTDQTLTEKEKEIEVERVKAESAQASAKM 222

Query: 834 LQKKKKE-----EEKKKKLADMAARKRQREEEERKEKERKRKRVMESRRQQQEHEEKLRA 888
           L + +++     E+K++   +   +  ++ E +R +  ++++R +  + Q+QE   K   
Sbjct: 223 LHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQEQEQLLKEGF 282

Query: 889 KKEEERKKKEADLL 902
           +KE    K E   L
Sbjct: 283 QKESRIMKNEIQDL 296

>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 300

class: All alpha proteins
fold: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
superfamily: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
family: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
domain: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.8 bits (113), Expect = 3e-06
 Identities = 23/154 (14%), Positives = 57/154 (37%), Gaps = 2/154 (1%)

Query: 776 KQAAAIITGKRDVKVKALEAAEAAKRLAVEKENERKMKKEALKLERAKLEQENLKQLELQ 835
           K       G   + V+ L+  +        K  + +   +     +  +    L+  +  
Sbjct: 140 KAGIYSKPGGYRLFVQKLQDLKKKYYEEPRKGIQAEEILQTYLKSKESMTDAILQTDQTL 199

Query: 836 KKKKEEEKKKKLADMAARKRQREEEERKEKERKRKRVMESRRQQQEHEEKLRAKKEEERK 895
            +K++E + +++   +A+   +   E + K  +     E  R  QEH ++L  K E +R 
Sbjct: 200 TEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKE--RSYQEHLKQLTEKMENDRV 257

Query: 896 KKEADLLMVSKDETWRDYKRVKDQGEENPAKMKK 929
           +   +       +     + +K+  ++    MK 
Sbjct: 258 QLLKEQERTLALKLQEQEQLLKEGFQKESRIMKN 291

>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 300

class: All alpha proteins
fold: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
superfamily: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
family: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
domain: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.7 bits (110), Expect = 9e-06
 Identities = 10/108 (9%), Positives = 40/108 (37%), Gaps = 2/108 (1%)

Query: 785 KRDVKVKALEAAEAAKRLAVEKENERKMKKEALKLERAKLEQENLKQLELQKKKKEEEKK 844
           + D  +   E     +R+  E           ++ +  ++ ++  +  +   K+  E+ +
Sbjct: 194 QTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKME 253

Query: 845 KKLADMAARKRQREEEERKEKERKRKRVMESRRQQQEHEEKLRAKKEE 892
                    K Q      K +E+++      +++ +  + +++  + +
Sbjct: 254 NDRV--QLLKEQERTLALKLQEQEQLLKEGFQKESRIMKNEIQDLQTK 299

>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 300

class: All alpha proteins
fold: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
superfamily: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
family: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
domain: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.8 bits (100), Expect = 1e-04
 Identities = 18/115 (15%), Positives = 54/115 (46%), Gaps = 6/115 (5%)

Query: 772 LVQQKQAAAIITGKRDVKVKALEAAEAAKRLAVEKENERKMKKEALKLERAKLEQENLKQ 831
           ++Q  Q       + +V+    E+A+A+ ++  E + + +   E  +    +  ++  ++
Sbjct: 192 ILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEK 251

Query: 832 LELQKKKKEEEKKKKLADMAARKRQREEEERKEKERKRKRVMESRRQQQEHEEKL 886
           +E  + +  +E+++ L        + +E+E+  KE  +K     + + Q+ + K+
Sbjct: 252 MENDRVQLLKEQERTL------ALKLQEQEQLLKEGFQKESRIMKNEIQDLQTKM 300

>d1sa0e_ a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 138

class: All alpha proteins
fold: Non-globular all-alpha subunits of globular proteins
superfamily: Stathmin
family: Stathmin
domain: Stathmin 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 46.4 bits (110), Expect = 1e-06
 Identities = 21/91 (23%), Positives = 39/91 (42%)

Query: 809 ERKMKKEALKLERAKLEQENLKQLELQKKKKEEEKKKKLADMAARKRQREEEERKEKERK 868
           E + K EA +  R   E E LK L  +++ + E  +K + +     +  +E+  ++ E  
Sbjct: 46  EIQKKLEAAEERRKYQEAELLKHLAEKREHEREVIQKAIEENNNFIKMAKEKLAQKMESN 105

Query: 869 RKRVMESRRQQQEHEEKLRAKKEEERKKKEA 899
           ++          E  ++     EE RK KE 
Sbjct: 106 KENREAHLAAMLERLQEKDKHAEEVRKNKEL 136

>d1sa0e_ a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 138

class: All alpha proteins
fold: Non-globular all-alpha subunits of globular proteins
superfamily: Stathmin
family: Stathmin
domain: Stathmin 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 44.5 bits (105), Expect = 7e-06
 Identities = 19/103 (18%), Positives = 43/103 (41%), Gaps = 5/103 (4%)

Query: 791 KALEAAEAAKRLAVEKENERKMKKEALKLERAKLEQENLKQLELQKKKKEEEKKKKLADM 850
           +     E  K+L   +E  +  + E        L ++   + E+ +K  EE         
Sbjct: 40  RDPSLEEIQKKLEAAEERRKYQEAE----LLKHLAEKREHEREVIQKAIEENNNFI-KMA 94

Query: 851 AARKRQREEEERKEKERKRKRVMESRRQQQEHEEKLRAKKEEE 893
             +  Q+ E  ++ +E     ++E  +++ +H E++R  KE +
Sbjct: 95  KEKLAQKMESNKENREAHLAAMLERLQEKDKHAEEVRKNKELK 137

>d1sa0e_ a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 138

class: All alpha proteins
fold: Non-globular all-alpha subunits of globular proteins
superfamily: Stathmin
family: Stathmin
domain: Stathmin 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.8 bits (98), Expect = 7e-05
 Identities = 14/103 (13%), Positives = 43/103 (41%), Gaps = 1/103 (0%)

Query: 796 AEAAKRLAVEKENERKMKKEALKLERAKLEQENLKQLELQKKKKEEEKKKKLADMAARKR 855
                  ++ +  +  +++   KLE A+  ++  +   L+   ++ E ++++   A  + 
Sbjct: 28  GVPEFNASLPRRRDPSLEEIQKKLEAAEERRKYQEAELLKHLAEKREHEREVIQKAIEEN 87

Query: 856 QREEEERKEKERKRKRVMESRRQQQEHEEKLRAKKEEERKKKE 898
               +  KEK  ++    +  R+       L   +E+++  +E
Sbjct: 88  NNFIKMAKEKLAQKMESNKENREAHL-AAMLERLQEKDKHAEE 129

>d1sa0e_ a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 138

class: All alpha proteins
fold: Non-globular all-alpha subunits of globular proteins
superfamily: Stathmin
family: Stathmin
domain: Stathmin 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.3 bits (89), Expect = 0.001
 Identities = 10/93 (10%), Positives = 32/93 (34%)

Query: 789 KVKALEAAEAAKRLAVEKENERKMKKEALKLERAKLEQENLKQLELQKKKKEEEKKKKLA 848
           +++    A   +R   E E  + + ++         +        ++  K++  +K +  
Sbjct: 46  EIQKKLEAAEERRKYQEAELLKHLAEKREHEREVIQKAIEENNNFIKMAKEKLAQKMESN 105

Query: 849 DMAARKRQREEEERKEKERKRKRVMESRRQQQE 881
                       ER +++ K    +   ++ +E
Sbjct: 106 KENREAHLAAMLERLQEKDKHAEEVRKNKELKE 138

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00