Citrus Sinensis ID: 001569

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050-

MIPYPEPYQTMYQQRRLGALGIEWRPSSLKLAVGPDFSLDQGYQLQPLADLDVMIDPLPEFIDVMDWEPENEVQSDDNDSEYNVAEEYSTEEKGSLSSTSSGDSECSAEDSEDGENPMDGLRRSKRKKQKAEVEIMTSSGRRVKRRILDESEGNAAFGNKRTRKSGNRQKSSRRKSSTSKSLRPQRAAARNARSFFSKITGASTDGEDVDGSEGELSESESDLQDSYIESEESGRSLLNEQRKHSKGKGISLDDSEDVTKLDTPESHVNAGIRRLVLKLPVRDSNKHELQERTSDKCNQLVSVIGTSSEAHQEATEGNGNRVSYVGNNCSSVDANCGLMERRGRGQFDKLEDYLNLSNGYKDGKIRWGGVRARSSKRLKIGEMMPLDANNGSGIHLDDDKEKESEVNGHVKPEKDGIDISCGEEITNCGDNTDEVPLKNVKNLSGENNDVYSGDASCKEQQSGFSELNYYDESKCVNTTDEDTTPYPNHLQNGTIQPSELKEILTPVSTKLRIRSKRILRDADVENQNNGCDALHGSSLDIKPNSLPEVLESDGTNRTSSDRGADGSQRLNAQIDSTSEHDPLGSHSHSHDPLGSHSHSHSRKMFNVVYRRSKTNRDRTNSEGDGGGVGESTLNANNNNFHESATDGSRRTRSMGLKTTTCDPDNVSSNLRLEQHNQPEDMYSGHNRSTSRCQLPHEEWGSSSKMTVGLRSTRNRRTSYLFCDSSPIDRRKTHQSLRKGSWLMLSTHEEGSRYIPQLGDEVVYLRQGHQEYINYSGSREVGPWITVKGNIRAVEFCKVESLEYATASGSGDSCCKMTLKFIDPTSSVSNMTFRLTLPEVTGFPDFLVERTRFDAAIQRNWTCRDKCKVWWKNESDEDGSWWDGRVLSVKPKSSEFPDSPWERYTVQYKTEPTETHLHSPWELFDSDTQWEQPRIDDDNRNKLLSAFAKLEQSANRVQDQYGVQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKRLSDLVTRTLSSLKAPQFHDVGQ

ccccccHHHHHHHHHHHcccccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccEEcccccccccccccccccccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccccccccccEEEEEHHHHHHHHHHHccccccccccccccccccEEEEEEEEEEEEccccccEEEEEEEEEEcccccccccEEEEEcccccccccEEEEHHHHHHHHHHcccccccEEEEccccccccccEEEEEEEEEcccccccccccccEEEEEEccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccHHHHHHcccccccccccccccccccccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccccccccccc

cccccccHHHHHHHHHHHHHccccccccEEEEEcccccccccccccccccHHHHccccccHHHHHcccccccEEcccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcccccEEEEccccEEEEEcccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHHccccccccccEcccccccccccccccccccccccEEEEEEEEccccccccccccccccccccccccccccccccccccccccEcEcccccccccccccccccHccccccccccccccccccccccEEEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccEccccccccccccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEcEcccccccccccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEcccccccccccccccccccccccccccccccccccccccccccEcccccccccccccccEEccccccccccccccccccccccccHcccccccccccccccccccccccccccccHHHcccHHcccccHHHEccccccccccccccccEEEEEccccHHHHEEcccccccccccccccccccEEEEEEEEEEEEcccccccEEEEEEEEEcccccccccEEEEEEccccccHHHHHHHHHHHHHHHHccccccEEEEEEccccccccccEEEEEEEEccccccccccccEEEEEEEEcccccccccccccccccccccccccccHHHHHHHHccccccccccccccHHccHHHHHcHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccccccHHHHcc

mipypepyqtMYQQRRLGAlgiewrpsslklavgpdfsldqgyqlqpladldvmidplpefidvmdwepenevqsddndseynvaeeysteekgslsstssgdsecsaedsedgenpmdglrrskrkKQKAEVEIMTSSGRRVKRRIldesegnaafgnkrtrksgnrqkssrrksstskslrpQRAAARNARSFFSkitgastdgedvdgsegelsesesdlqdsyiesEESGRSLLNEQRkhskgkgislddsedvtkldtpeshvnAGIRRLVLklpvrdsnkhelqertsdkCNQLVSVIGtsseahqeategngnrvsyvgnncssvdancglmerrgrgqfdklEDYLNlsngykdgkirwggvrarsskrlkigemmpldanngsgihldddkekesevnghvkpekdgidiscgeeitncgdntdevplknvknlsgenndvysgdasckeqqsgfselnyydeskcvnttdedttpypnhlqngtiqpselkeiltpvstklrirskrilrdadvenqnngcdalhgssldikpnslpevlesdgtnrtssdrgadgsqrlnaqidstsehdplgshshshdplgshshshsRKMFNVVYRRsktnrdrtnsegdgggvgestlnannnnfhesatdgsrrtrsmglktttcdpdnvssnlrleqhnqpedmysghnrstsrcqlpheewgssskmtvglrstrnrrtsylfcdsspidrrkthqslrkGSWLMLstheegsryipqlgDEVVYLRQGHqeyinysgsrevgpwitvkgniraveFCKVESLEyatasgsgdscckmtlkfidptssvsnmtfrltlpevtgfpdflVERTRFDAAIQRNWTCRDKCKVWwknesdedgswwdgrvlsvkpkssefpdspwerytvqykteptethlhspwelfdsdtqweqpridddnRNKLLSAFAKLEQSANRVQDQYGVQKLKQVSqktnftnrfpvplSLDVIQSRLENNYYRGLEAVKHDIAVMLSNaesyfgrntdlSTKIKRLSDLVTRTlsslkapqfhdvgq

MIPYPEPYQTMYQQRRLGALGIEWRPSSLKLAVGPDFSLDQGYQLQPLADLDVMIDPLPEFIDVMDWEPEnevqsddndseyNVAEEysteekgslsstssgdsecsaedsedgenpmdglrrskrkkqkaeveimtssgrrvkrrildesegnaafgnkrtrksgnrqkssrrksstskslrpqraaarnarsffskitgastdgedvdgsegelsesesdlqdsYIESEESGRSLLneqrkhskgkgislddsedvtkldtpeshvnagirrlvlklpvRDSNKhelqertsdkcnqLVSVIGTSseahqeategngnrvsyVGNNCSSVDANCGLMERRGRGQFDKLEDYLNLsngykdgkirwggvrarsskrlkigemmpldanngsgiHLDDDKEKesevnghvkpekdgidisCGEEITNCGDNTDEVPLKNVKNLSGENNDVYSGDASCKEQQSGFSELNYYDESKCVNTTDEDTTPYPNHlqngtiqpselkeiltpvstklrirskrilrdadvenqnngcdalhgssldikpnSLPEVLEsdgtnrtssdrgadgsqRLNAQIDSTSEHDPLGSHSHSHDPLGSHSHSHSRKMFNVVYRRsktnrdrtnsegdgggvgestlnannnnfhesatdgsrrtrSMGLktttcdpdnvssnLRLEQHNQPEDMYSGHNRSTSRCQlpheewgssskmtvglrstrnrrtsylfcdsspidrrkthqslrkgsWLMLSTHEEGSRYIPQLGDEVVYLRQGHQEYInysgsrevgpWITVKGNIRAVEFCKVESLEYATasgsgdsccKMTLKFIDPTSSVSNMTFRLTLPEVTGFPDFLVERTRfdaaiqrnwtcrdkckvwwknesdedgswwdgrvlsvkpkssefpdspweRYTVQYKTEptethlhspwelFDSDTQWEQPRIDDDNRNKLLSAFAKLEQSANRVQDQYGVQKLKqvsqktnftnrfpvplSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKRLSDLVTRtlsslkapqfhdvgq

MIPYPEPYQTMYQQRRLGALGIEWRPSSLKLAVGPDFSLDQGYQLQPLADLDVMIDPLPEFIDVMDWEPENEVQSDDNDSEYNVAEEYsteekgslsstssgdsecsaeDSEDGENPMDGLRRSKRKKQKAEVEIMTSSGRRVKRRILDESEGNAAFGNKRTrksgnrqkssrrksstsksLRPQraaarnarSFFSKITGASTdgedvdgsegelsesesdlqdsYIESEESGRSLLNEQRKHSKGKGISLDDSEDVTKLDTPESHVNAGIRRLVLKLPVRDSNKHELQERTSDKCNQLVSVIGTSSEAHQEATEGNGNRVSYVGNNCSSVDANCGLMERRGRGQFDKLEDYLNLSNGYKDGKIRWGGVRARSSKRLKIGEMMPLDANNGSGIHLDDDKEKESEVNGHVKPEKDGIDISCGEEITNCGDNTDEVPLKNVKNLSGENNDVYSGDASCKEQQSGFSELNYYDESKCVNTTDEDTTPYPNHLQNGTIQPSELKEILTPVSTKLRIRSKRILRDADVENQNNGCDALHGSSLDIKPNSLPEVLESDGTNRTSSDRGADGSQRLNAQIDSTSEHDPLGSHSHSHDPLGSHSHSHSRKMFNVVYRRSKTNRDRTNSEGDGGGVGESTLNANNNNFHESATDGSRRTRSMGLKTTTCDPDNVSSNLRLEQHNQPEDMYSGHNRSTSRCQLPHEEWGSSSKMTVGLRSTRNRRTSYLFCDSSPIDRRKTHQSLRKGSWLMLSTHEEGSRYIPQLGDEVVYLRQGHQEYINYSGSREVGPWITVKGNIRAVEFCKVESLEYATASGSGDSCCKMTLKFIDPTSSVSNMTFRLTLPEVTGFPDFLVERTRFDAAIQRNWTCRDKCKVWWKNESDEDGSWWDGRVLSVKPKSSEFPDSPWERYTVQYKTEPTETHLHSPWELFDSDTQWEQPRIDDDNRNKLLSAFAKLEQSANRVQDQYGVQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKRLSDLVTRTLSSLKAPQFHDVGQ

**********MYQQRRLGALGIEWRPSSLKLAVGPDFSLDQGYQLQPLADLDVMIDPLPEFIDVMDW***********************************************************************************************************************************************************************************************************GIRRLVLKL******************************************VSYVGNNCSSVDANCGLMERRGRGQFDKLEDYLNLSNGYKDGKIRWGGVR*************************************************C***I*******************************************YY********************************************************************************************************************************************************************************************************************************************************YLFC****************GSWLMLSTHEEGSRYIPQLGDEVVYLRQGHQEYINYSGSREVGPWITVKGNIRAVEFCKVESLEYATASGSGDSCCKMTLKFIDPTSSVSNMTFRLTLPEVTGFPDFLVERTRFDAAIQRNWTCRDKCKVWWKNESDEDGSWWDGRVLSV***********WERYTVQYK*******LHSPWELF************************************YGVQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKRLSDLVT****************

*IPYPEPYQTMYQQRRLGALGIEWRPSSLKLAVGPDFSLDQGYQLQPLADLDVMIDPLPEFIDVM**********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************LRKGSWLMLSTHEEGSRYIPQLGDEVVYLRQGHQEYINYSGSREVGPWITVKGNIRAVEFCKVESLEYATASGSGDSCCKMTLKFIDPTSSVSNMTFRLTLPEVTGFPDFLVERTRFDAAIQRNWTCRDKCKVWWKNESDEDGSWWDGRVLSVKPK*SEFPDSPWERYTVQYKTEPTETHLHSPWELFDSDTQWEQPR**DDNRNKLLSAFAKLEQSANRVQDQYGVQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKRLSDLVTRTLSSLKAPQFHDV**

MIPYPEPYQTMYQQRRLGALGIEWRPSSLKLAVGPDFSLDQGYQLQPLADLDVMIDPLPEFIDVMDWEPENEVQSDDNDSEYN********************************************************GRRVKRRILDESEGNAAF**********************************ARSFFSKITGAS********************************SLLN************LDDSEDVTKLDTPESHVNAGIRRLVLKLPVRDSNKHELQERTSDKCNQLVSVIGT***********NGNRVSYVGNNCSSVDANCGLMERRGRGQFDKLEDYLNLSNGYKDGKIRWGGVRARSSKRLKIGEMMPLDANNGSGIHLDD**********HVKPEKDGIDISCGEEITNCGDNTDEVPLKNVKNLSGENNDVYSGDASCKEQQSGFSELNYYDESKCVNTTDEDTTPYPNHLQNGTIQPSELKEILTPVSTKLRIRSKRILRDADVENQNNGCDALHGSSLDIKPNSLPEVLE***************SQRLNAQIDST************************RKMFNVVYRRSKT***********GGVGESTLNANNNNFHES*********SMGLKTTTCDPDNVSSNLRLEQHNQPEDMYSGHNRSTSRCQLPHEEWGSSSKMTVGLRSTRNRRTSYLFCDSSPIDRRKTHQSLRKGSWLMLSTHEEGSRYIPQLGDEVVYLRQGHQEYINYSGSREVGPWITVKGNIRAVEFCKVESLEYATASGSGDSCCKMTLKFIDPTSSVSNMTFRLTLPEVTGFPDFLVERTRFDAAIQRNWTCRDKCKVWWKNESDEDGSWWDGRVLSVKPKSSEFPDSPWERYTVQYKTEPTETHLHSPWELFDSDTQWEQPRIDDDNRNKLLSAFAKLEQSANRVQDQYGVQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKRLSDLVTRTLSSLKAPQFHDVGQ

MIPYPEPYQTMYQQRRLGALGIEWRPSSLKLAVGPDFSLDQGYQLQPLADLDVMIDPLPEFIDVMDWEPENEVQSDDND*E***************************************************VEIMTSSGRRVKRRILD*********************************************************************************************************S*DVTKLDTPESHVNAGIRRLVLKLPVRDSNK*************************************************************DKLEDYLNLSNGYKDGKIRWGGVRARSSKRLK***************************************ISC*EEITNCGDNTDEVPLKNVKNLSGENNDVYSGD***********************************************EILTPVSTKLRIRSKRILRDADV*************SLDIKPNSLPEVLE**************G************************************KMFN***RRS****************************************************************************************************************SPIDRRKTHQSLRKGSWLMLSTHEEGSRYIPQLGDEVVYLRQGHQEYINYSGSREVGPWITVKGNIRAVEFCKVESLEYATASGSGDSCCKMTLKFIDPTSSVSNMTFRLTLPEVTGFPDFLVERTRFDAAIQRNWTCRDKCKVWWKNESDEDGSWWDGRVLSVKPKSSEFPDSPWERYTVQYKTEPTETHLHSPWELFDSDTQWEQPRIDDDNRNKLLSAFAKLEQSANRVQDQYGVQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKRLSDLVTRTLSSLKAPQFH***Q

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx

MIPYPEPYQTMYQQRRLGALGIEWRPSSLKLAVGPDFSLDQGYQLQPLADLDVMIDPLPEFIDVMDWEPENEVQSDDNDSEYNVAEEYSTEEKGSLSSTSSGDSECSAEDSEDGENPMDGLRRSKRKKQKAEVEIMTSSGRRVKRRILDESEGNAAFGNKRTRKSGNRQKSSRRKSSTSKSLRPQRAAARNARSFFSKITGASTDGEDVDGSEGELSESESDLQDSYIESEESGRSLLNEQRKHSKGKGISLDDSEDVTKLDTPESHVNAGIRRLVLKLPVRDSNKHELQERTSDKCNQLVSVIGTSSEAHQEATEGNGNRVSYVGNNCSSVDANCGLMERRGRGQFDKLEDYLNLSNGYKDGKIRWGGVRARSSKRLKIGEMMPLDANNGSGIHLDDDKEKESEVNGHVKPEKDGIDISCGEEITNCGDNTDEVPLKNVKNLSGENNDVYSGDASCKEQQSGFSELNYYDESKCVNTTDEDTTPYPNHLQNGTIQPSELKEILTPVSTKLRIRSKRILRDADVENQNNGCDALHGSSLDIKPNSLPEVLESDGTNRTSSDRGADGSQRLNAQIDSTSEHDPLGSHSHSHDPLGSHSHSHSRKMFNVVYRRSKTNRDRTNSEGDGGGVGESTLNANNNNFHESATDGSRRTRSMGLKTTTCDPDNVSSNLRLEQHNQPEDMYSGHNRSTSRCQLPHEEWGSSSKMTVGLRSTRNRRTSYLFCDSSPIDRRKTHQSLRKGSWLMLSTHEEGSRYIPQLGDEVVYLRQGHQEYINYSGSREVGPWITVKGNIRAVEFCKVESLEYATASGSGDSCCKMTLKFIDPTSSVSNMTFRLTLPEVTGFPDFLVERTRFDAAIQRNWTCRDKCKVWWKNESDEDGSWWDGRVLSVKPKSSEFPDSPWERYTVQYKTEPTETHLHSPWELFDSDTQWEQPRIDDDNxxxxxxxxxxxxxxxxxxxxxYGVQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKRLSDLVTRTLSSLKAPQFHDVGQ

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		1051	2.2.26 [Sep-21-2011]
Q921C3		2304	Bromodomain and WD repeat	yes	no	0.269	0.122	0.280	3e-23
A2AHJ4		1799	Bromodomain and WD repeat	no	no	0.267	0.156	0.260	2e-22
Q6RI45		1802	Bromodomain and WD repeat	yes	no	0.265	0.154	0.259	2e-22
Q9NSI6		2320	Bromodomain and WD repeat	no	no	0.270	0.122	0.275	2e-22
Q8VDD9		1821	PH-interacting protein OS	no	no	0.254	0.147	0.263	3e-20
Q8WWQ0		1821	PH-interacting protein OS	no	no	0.254	0.146	0.256	6e-20

>sp\|Q921C3\|BRWD1_MOUSE Bromodomain and WD repeat-containing protein 1 OS=Mus musculus GN=Brwd1 PE=1 SV=2	Back alignment and function desciption

 Score =  111 bits (277), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 93/331 (28%), Positives = 152/331 (45%), Gaps = 48/331 (14%)

Query: 741  WLMLSTHEEGSRYIPQLGDEVVYLRQGHQEYIN-------YSGSREVGPWITVKGNIRAV 793
            W+  +T  + S ++PQ+GDEV+Y RQGH+ YI        Y  +    PW   K ++R  
Sbjct: 947  WITDTTLRK-SPFVPQMGDEVMYFRQGHEAYIEAVRRNNIYELNPHKEPW--RKMDLRDQ 1003

Query: 794  EFCKVESLEYATASGSGDSCCKMTLKFIDP-TSSVSNMTFRLTLPEVTGFPDFLVERTRF 852
            E  K+  L Y    G    CC + L FIDP T  +++ +F +   ++    DFLV R  +
Sbjct: 1004 ELVKIVGLRYEV--GPPTLCC-LKLAFIDPATGRLTDKSFSIRYHDMPDVIDFLVLRQFY 1060

Query: 853  DAAIQRNWTCRDKCKVWWKNESDEDGSWWDGRVLSVKPKSSEFPDSPWERYTVQYKTEPT 912
            D A QRNW   D+ +      S  D +WW G VLS +P   ++PDS ++ Y V++    T
Sbjct: 1061 DEARQRNWQPCDRFR------SIIDDAWWFGTVLSQEPYQPQYPDSHFQCYIVRWDN--T 1112

Query: 913  ETHLHSPWELFDSDTQWEQPR-------IDDDNRNKLLSAFAKLEQSANRVQDQ------ 959
            ET   SPW++       + P        +  D   KLL    + E    R +D+      
Sbjct: 1113 ETEKLSPWDMEPIPDNVDPPEELGASISVTSDELEKLLYKPQEGEW-GQRSRDEECDRII 1171

Query: 960  YGVQKLKQVSQKTNFTN-----RFP-------VPLSLDVIQSRLENNYYRGLEAVKHDIA 1007
             G+ +L  +     F        +P        P  L  I+ RL N +YR L A+  ++ 
Sbjct: 1172 SGIDQLLNLDIAAAFAGPVDLCTYPKYCTVVAYPTDLYTIRMRLVNRFYRRLSALIWEVR 1231

Query: 1008 VMLSNAESYFGRNTDLSTKIKRLSDLVTRTL 1038
             +  NA ++    + ++   K+++D + + +
Sbjct: 1232 YIEHNARTFNEPESVIARSAKKITDQLLKFI 1262

May be a transcriptional activator. May be involved in chromatin remodeling. Plays a role in the regulation of cell morphology and cytoskeletal organization. Required in the control of cell shape.
Mus musculus (taxid: 10090)

>sp\|A2AHJ4\|BRWD3_MOUSE Bromodomain and WD repeat-containing protein 3 OS=Mus musculus GN=Brwd3 PE=2 SV=1	Back alignment and function description

>sp\|Q6RI45\|BRWD3_HUMAN Bromodomain and WD repeat-containing protein 3 OS=Homo sapiens GN=BRWD3 PE=1 SV=2	Back alignment and function description

>sp\|Q9NSI6\|BRWD1_HUMAN Bromodomain and WD repeat-containing protein 1 OS=Homo sapiens GN=BRWD1 PE=1 SV=4	Back alignment and function description

>sp\|Q8VDD9\|PHIP_MOUSE PH-interacting protein OS=Mus musculus GN=Phip PE=1 SV=2	Back alignment and function description

>sp\|Q8WWQ0\|PHIP_HUMAN PH-interacting protein OS=Homo sapiens GN=PHIP PE=1 SV=2	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1051
225431924		1756	PREDICTED: uncharacterized protein LOC10	0.967	0.579	0.612	0.0
356532519		1777	PREDICTED: uncharacterized protein LOC10	0.960	0.567	0.510	0.0
356558137		1773	PREDICTED: uncharacterized protein LOC10	0.952	0.564	0.499	0.0
449433431		1729	PREDICTED: uncharacterized protein LOC10	0.944	0.574	0.481	0.0
449517975		1382	PREDICTED: LOW QUALITY PROTEIN: uncharac	0.944	0.718	0.478	0.0
357449001		1844	Bromodomain and WD repeat-containing pro	0.961	0.548	0.484	0.0
124359647		1826	Cytochrome cd1-nitrite reductase-like, C	0.961	0.553	0.484	0.0
225437555		1766	PREDICTED: uncharacterized protein LOC10	0.950	0.565	0.490	0.0
297795697		1662	transducin family protein [Arabidopsis l	0.893	0.564	0.468	0.0
42568419		1677	WD40/YVTN repeat and Bromo-WDR9-I-like d	0.894	0.560	0.469	0.0

>gi\|225431924\|ref\|XP_002277060.1\| PREDICTED: uncharacterized protein LOC100248159 [Vitis vinifera]	Back alignment and taxonomy information

 Score = 1111 bits (2873), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 654/1068 (61%), Positives = 779/1068 (72%), Gaps = 51/1068 (4%)

Query: 1    MIPYPEPYQTMYQQRRLGALGIEWRPSSLKLAVGPDFSLDQGYQLQPLADLDVMIDPLPE 60
            MIPYPEPYQ+MYQQRRLGALGIEWRPSSL+LAVGPDF+LDQ YQ+ PL DLDV+IDPLPE
Sbjct: 713  MIPYPEPYQSMYQQRRLGALGIEWRPSSLRLAVGPDFNLDQDYQMLPLPDLDVLIDPLPE 772

Query: 61   FIDVMDWEPENEVQSDDNDSEYNVAEEYSTE-EKGSLSSTSSGDSECSAEDSEDGENPMD 119
            FIDVMDWEPENEVQ+DD DSEYNV EEYST  E+GSLSS SSGD ECSAEDS+   +  D
Sbjct: 773  FIDVMDWEPENEVQTDDTDSEYNVTEEYSTGGEQGSLSSNSSGDPECSAEDSDVENSHKD 832

Query: 120  GLRRSKRKKQKAEVEIMTSSGRRVKRRILDESEGNAAFGNKRTRKSGNRQKSSRRKSSTS 179
            GLRRSKRKKQKAE EIMT SGRRVKRR LDE +GN+   N RTRKS + +K S + SS S
Sbjct: 833  GLRRSKRKKQKAETEIMTFSGRRVKRRNLDEFDGNSLRSN-RTRKSRSGRKVSHKNSSKS 891

Query: 180  KSLRPQRAAARNARSFFSKITGASTDGEDVDGSEGELSESESDLQDSYIESEESGRSLLN 239
            KSLRPQRAAARNA + FS++ G STDGED DGSEG+LSESES L+DS IES+ES  SL N
Sbjct: 892  KSLRPQRAAARNALTLFSRMKGTSTDGEDEDGSEGDLSESESSLEDSNIESDESDGSLQN 951

Query: 240  EQRKHSKGKGISLDDSEDVTKL-DTPESHVNAG-IRRLVLKLPVRDSNKHELQERTSDKC 297
            EQ KHSKGK +SLD+ ED+ K  + PES +NAG  RRLVLK P+RDSN+  L        
Sbjct: 952  EQCKHSKGKEVSLDEFEDMDKQHEHPESCMNAGNRRRLVLKFPIRDSNRLLLAPE----- 1006

Query: 298  NQLVSVIGTSSEAHQEATEGNGNRVSYVGNNCSSVDANCGLMERRGRGQFDKLEDYLNLS 357
            NQ   ++G+SS+A QEA+E N N +S      SS DANC  +ERR RGQ +K+ED+L+L 
Sbjct: 1007 NQ-ADLVGSSSKAPQEASEVNRNHLSSQDLGYSSSDANCNRIERRERGQPEKIEDHLDLF 1065

Query: 358  NGYKDGKIRWGGVRARSSKRLKIGEMMPLDANNGSGIHLDDDKEKESEVNGHVKPEKDGI 417
             GYKDGKIRWGGV+AR+SKRL++ E MP D +  S   +D     E+ +NG  +PEK+  
Sbjct: 1066 EGYKDGKIRWGGVKARTSKRLRVVEPMPSDTDARSRQCIDGHDATENTINGFQEPEKNYD 1125

Query: 418  DISCGEEITNCGDNTDEVPLKNVKNLSGENNDVYSGDASCK-EQQSGFSELNYYDES-KC 475
             IS   EI    + T ++   N ++    N  V   DA+   ++ S F+E   YDE  K 
Sbjct: 1126 RISPHSEIKYHVEETGKMAHMNGQHFG--NGAVEGLDATSNGKKHSSFNECMNYDEPPKQ 1183

Query: 476  VNTTDEDTTPYPNHLQNGTIQPSELKEILTPVSTKLRIRSKRILRDAD----------VE 525
            VN    DT        NGT  P  LKE  T  STKLRIRSK+IL D +          VE
Sbjct: 1184 VNMVAGDTAASSVQHSNGTDHPPHLKESSTS-STKLRIRSKKILEDPEIPSDPKIKSSVE 1242

Query: 526  NQNNG-CDALHGSSLDIKPNSLPEVLESDGTNRTSSDRG-ADGSQRLNAQIDSTSEHDPL 583
            + +NG CD L  S L+I      EV + D T+R  SD G  +G  +  A I+  S     
Sbjct: 1243 DWSNGRCDTLSESQLEIA-----EVPDCDDTDRPHSDHGDWNGLLKSEAAIEQNSR---- 1293

Query: 584  GSHSHSHDPLGSHSHSHSRKMFNVVYRRSKTNRDRTNSEGDGGGVGESTLNANNNN---- 639
               S   D  G +SH ++ KM+N VYRRS++ R RTNSEG+GGG+ EST NA+N+N    
Sbjct: 1294 ---SVLQDSQGLYSHVNN-KMYNAVYRRSRSYRTRTNSEGEGGGMEESTSNASNHNLDSG 1349

Query: 640  --FHESATDGSRRTRSMGLKTTTCDPDNVSSNLRLEQHNQPEDMYSGHNR-STSRC-QLP 695
              FHE+ TDG+RRTRSMGLK TT DPD   SNL+L   +  ED     ++ S +R  +LP
Sbjct: 1350 MDFHEATTDGARRTRSMGLKATTRDPDVTCSNLKLRLGHGSEDTLKSVDKFSVNRSDELP 1409

Query: 696  HEEWGSSSKMTVGLRSTRNRRTSYLFCDSSP--IDRRKTHQSLRKGSWLMLSTHEEGSRY 753
             EEW SSS+MTVGLRS RNRR SY   D+SP  ++RRK HQS +K SWLMLS H E  RY
Sbjct: 1410 CEEWMSSSRMTVGLRSARNRRASYHVRDTSPSPMERRKPHQSSKKVSWLMLSMHVE-PRY 1468

Query: 754  IPQLGDEVVYLRQGHQEYINYSGSREVGPWITVKGNIRAVEFCKVESLEYATASGSGDSC 813
            IPQLGDEVVYLRQGHQEYI YSGS E GPW +VKG IRAVEFCKVE LEY+  +GSGDSC
Sbjct: 1469 IPQLGDEVVYLRQGHQEYITYSGSHEAGPWTSVKGIIRAVEFCKVEGLEYSPFAGSGDSC 1528

Query: 814  CKMTLKFIDPTSSVSNMTFRLTLPEVTGFPDFLVERTRFDAAIQRNWTCRDKCKVWWKNE 873
            CKMTL+F+DPTS V   TF+LTLPEVT FPDFLVERTR+DAAIQRNWT RDKC+VWWKNE
Sbjct: 1529 CKMTLQFVDPTSHVFGKTFKLTLPEVTSFPDFLVERTRYDAAIQRNWTSRDKCRVWWKNE 1588

Query: 874  SDEDGSWWDGRVLSVKPKSSEFPDSPWERYTVQYKTEPTETHLHSPWELFDSDTQWEQPR 933
             +EDGSWWDGR+LSVK +S EFPDSPW+RY ++Y++EPTETHLHSPWEL+D  TQWEQP 
Sbjct: 1589 GEEDGSWWDGRILSVKARSPEFPDSPWDRYVIRYRSEPTETHLHSPWELYDIGTQWEQPH 1648

Query: 934  IDDDNRNKLLSAFAKLEQSANRVQDQYGVQKLKQVSQKTNFTNRFPVPLSLDVIQSRLEN 993
            IDD++RNKLLS+ AKLEQS ++ QD YG+QKLKQVSQK+NF NRFPVPLSL+VIQSRL+N
Sbjct: 1649 IDDESRNKLLSSLAKLEQSGDKPQDYYGIQKLKQVSQKSNFLNRFPVPLSLEVIQSRLKN 1708

Query: 994  NYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKRLSDLVTRTLSSL 1041
             YYR +EAVKHD+ VMLSNAE+YF +N +LS K++RLS+  TR LSS+
Sbjct: 1709 QYYRSMEAVKHDVKVMLSNAETYFVKNAELSMKVRRLSEWFTRMLSSI 1756

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|356532519\|ref\|XP_003534819.1\| PREDICTED: uncharacterized protein LOC100819598 [Glycine max]	Back alignment and taxonomy information

>gi\|356558137\|ref\|XP_003547364.1\| PREDICTED: uncharacterized protein LOC100818665 [Glycine max]	Back alignment and taxonomy information

>gi\|449433431\|ref\|XP_004134501.1\| PREDICTED: uncharacterized protein LOC101214610 [Cucumis sativus]	Back alignment and taxonomy information

>gi\|449517975\|ref\|XP_004166019.1\| PREDICTED: LOW QUALITY PROTEIN: uncharacterized LOC101214610, partial [Cucumis sativus]	Back alignment and taxonomy information

>gi\|357449001\|ref\|XP_003594776.1\| Bromodomain and WD repeat-containing protein [Medicago truncatula] gi\|355483824\|gb\|AES65027.1\| Bromodomain and WD repeat-containing protein [Medicago truncatula]	Back alignment and taxonomy information

>gi\|124359647\|gb\|ABN06020.1\| Cytochrome cd1-nitrite reductase-like, C-terminal haem d1 [Medicago truncatula]	Back alignment and taxonomy information

>gi\|225437555\|ref\|XP_002270469.1\| PREDICTED: uncharacterized protein LOC100248563 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|297795697\|ref\|XP_002865733.1\| transducin family protein [Arabidopsis lyrata subsp. lyrata] gi\|297311568\|gb\|EFH41992.1\| transducin family protein [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|42568419\|ref\|NP_199754.2\| WD40/YVTN repeat and Bromo-WDR9-I-like domain-containing protein [Arabidopsis thaliana] gi\|332008427\|gb\|AED95810.1\| WD40/YVTN repeat and Bromo-WDR9-I-like domain-containing protein [Arabidopsis thaliana]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1051
TAIR\|locus:2158044		1677	AT5G49430 "AT5G49430" [Arabido	0.502	0.314	0.514	2.7e-202
TAIR\|locus:2061997		1520	AT2G47410 "AT2G47410" [Arabido	0.376	0.260	0.471	2.6e-137
FB\|FBgn0011785		2232	BRWD3 "BRWD3" [Drosophila mela	0.364	0.171	0.257	3.8e-19
ZFIN\|ZDB-GENE-041111-120		2008	brwd1 "bromodomain and WD repe	0.277	0.145	0.264	6.5e-18
ZFIN\|ZDB-GENE-050208-261		1805	phip "pleckstrin homology doma	0.168	0.098	0.306	8.6e-17
MGI\|MGI:1890651		2304	Brwd1 "bromodomain and WD repe	0.295	0.134	0.286	9.7e-17
UNIPROTKB\|F1N8L6		1495	BRWD3 "Uncharacterized protein	0.159	0.112	0.321	1.2e-16
UNIPROTKB\|F1N1C9		1658	BRWD3 "Uncharacterized protein	0.453	0.287	0.240	2.1e-16
UNIPROTKB\|Q6RI45		1802	BRWD3 "Bromodomain and WD repe	0.465	0.271	0.229	2.3e-16
UNIPROTKB\|Q9NSI6		2320	BRWD1 "Bromodomain and WD repe	0.446	0.202	0.242	4.3e-16

TAIR\|locus:2158044 AT5G49430 "AT5G49430" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1381 (491.2 bits), Expect = 2.7e-202, Sum P(2) = 2.7e-202
 Identities = 292/567 (51%), Positives = 381/567 (67%)

Query:   488 NHLQNGTIQPSELKEILTPVSTKLRIRSKRILRDADVENQNNG----CDALHGSSLDIKP 543
             N  QN T +  +L + L P+ST L+IRSKR+ R  D   +  G     D   G S D   
Sbjct:  1135 NSSQNVTHR-HDLIDSLPPISTTLKIRSKRVSRAPDTSLRQEGKSLSIDQETGGS-DALN 1192

Query:   544 NSLPEVLESDGTNRTSSDRGADGSQRLNAQIDSTSEHDP--LGSHSHSHD-PLGSHSHSH 600
             +   +  + D T     D G  G++ ++ + D   E +P    + S ++D P+   SHSH
Sbjct:  1193 DGFEDA-KCDLTLDCQKD-GVVGTE-ISLRNDCVLELNPQICDALSIANDVPV---SHSH 1246

Query:   601 SRKMFNVVYRRSKTNRDRTNSEGDGGGVGE------STLNANNNNFHESATDGSRRTRSM 654
              ++MF+ VYRR K+ + + N + D     E      S  + + +  HE A++G   T   
Sbjct:  1247 PKRMFDFVYRR-KSRKHKNNLDRDAALTKEVSPGSCSQDHGSGSKSHEGASNGFHGTELN 1305

Query:   655 GLKTTTCDPDNVSSNLRLEQHNQPEDMYSGHNRSTSRCQLPHEEWGSSSKMTVGLRSTRN 714
             GL+ +         +L    H Q  D  S  +R     Q   EE  S+S  T+ LRSTRN
Sbjct:  1306 GLEKS-------EGSLT---HIQ--DKISD-SRGNQNSQ---EELRSASGATLRLRSTRN 1349

Query:   715 RRTSYLFCDSSPIDRRKTHQSLRKGSWLMLSTHEEGSRYIPQLGDEVVYLRQGHQEYINY 774
             R+++Y F ++ PI+ +K  Q +   SWL LS HEEGSRYIPQ+GDEV YLRQGHQEY+N+
Sbjct:  1350 RKSTYPFSETKPIETKKPQQLIENVSWLTLSIHEEGSRYIPQMGDEVAYLRQGHQEYLNF 1409

Query:   775 SGSREVGPWITVKG-NIRAVEFCKVESLEYATASGSGDSCCKMTLKFIDPTSSVSNMTFR 833
             S  REV PW ++KG NI+AVE CKVESLEYAT  GSGDSCCKM LK IDP S V N  F+
Sbjct:  1410 SSLREVAPWTSIKGGNIKAVEICKVESLEYATLPGSGDSCCKMILKVIDPNSEVFNKAFK 1469

Query:   834 LTLPEVTGFPDFLVERTRFDAAIQRNWTCRDKCKVWWKNESDEDGSWWDGRVLSVKPKSS 893
             LTLPEV  FPDFLVER+R++AAIQRNWTCRDKCKVWW++E +EDGSWW+GR+L+VKPKS 
Sbjct:  1470 LTLPEVVTFPDFLVERSRYEAAIQRNWTCRDKCKVWWRDEGEEDGSWWEGRILAVKPKSP 1529

Query:   894 EFPDSPWERYTVQYKTEPTETHLHSPWELFDSDTQWEQPRIDDDNRNKLLSAFAKLEQSA 953
             +FPDSPWERYTV+YK++P ETHLHSPWELFD+DT+WEQP IDD+ RN+LLSA  KLE S 
Sbjct:  1530 DFPDSPWERYTVKYKSDPAETHLHSPWELFDADTKWEQPHIDDEQRNRLLSALTKLETSD 1589

Query:   954 NRVQDQYGVQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNA 1013
              R QD +G++KL Q    ++++NRFPVPLSL+VI+SRLENNYYR +EA++HD++VMLSNA
Sbjct:  1590 KRTQDSFGLRKLNQTVGNSSYSNRFPVPLSLEVIRSRLENNYYRSVEALRHDVSVMLSNA 1649

Query:  1014 ESYFGRNTDLSTKIKRLSDLVTRTLSS 1040
             E++FGRN  ++ KI  LS+   RTL S
Sbjct:  1650 ETFFGRNKSVAAKISNLSNWFDRTLPS 1676

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS

TAIR\|locus:2061997 AT2G47410 "AT2G47410" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

FB\|FBgn0011785 BRWD3 "BRWD3" [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-041111-120 brwd1 "bromodomain and WD repeat domain containing 1" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-050208-261 phip "pleckstrin homology domain interacting protein" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

MGI\|MGI:1890651 Brwd1 "bromodomain and WD repeat domain containing 1" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|F1N8L6 BRWD3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|F1N1C9 BRWD3 "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|Q6RI45 BRWD3 "Bromodomain and WD repeat-containing protein 3" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|Q9NSI6 BRWD1 "Bromodomain and WD repeat-containing protein 1" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		1051
cd05529		128	cd05529, Bromo_WDR9_I_like, Bromodomain; WDR9 repe	5e-45
smart00297		107	smart00297, BROMO, bromo domain	1e-09
pfam00439		84	pfam00439, Bromodomain, Bromodomain	1e-09
cd04369		99	cd04369, Bromodomain, Bromodomain	6e-07
cd05520		103	cd05520, Bromo_polybromo_III, Bromodomain, polybro	6e-04
cd05519		103	cd05519, Bromo_SNF2, Bromodomain, SNF2-like subfam	0.001
cd05525		106	cd05525, Bromo_ASH1, Bromodomain; ASH1_like sub-fa	0.002

>gnl\|CDD\|99958 cd05529, Bromo_WDR9_I_like, Bromodomain; WDR9 repeat I_like subfamily	Back alignment and domain information

 Score =  158 bits (401), Expect = 5e-45
 Identities = 57/129 (44%), Positives = 80/129 (62%), Gaps = 2/129 (1%)

Query: 913  ETHLHSPWELFDSDTQWEQPRIDDDNRNKLLSAFAKLEQSANRVQDQYGVQKLKQVSQKT 972
               L S WELFD    WEQP I D+ R +L+S   KL  S      +Y    +   +   
Sbjct: 2    YNPLSSEWELFDPG--WEQPHIRDEERERLISGLDKLLLSLQLEIAEYFEYPVDLRAWYP 59

Query: 973  NFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKRLSD 1032
            ++ NR PVP+ L+ I+SRLEN YYR LEA++HD+ ++LSNAE++   N++++ K KRLSD
Sbjct: 60   DYWNRVPVPMDLETIRSRLENRYYRSLEALRHDVRLILSNAETFNEPNSEIAKKAKRLSD 119

Query: 1033 LVTRTLSSL 1041
             + R LSSL
Sbjct: 120  WLLRILSSL 128

WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. Length = 128

>gnl\|CDD\|197636 smart00297, BROMO, bromo domain	Back alignment and domain information

>gnl\|CDD\|215921 pfam00439, Bromodomain, Bromodomain	Back alignment and domain information

>gnl\|CDD\|99922 cd04369, Bromodomain, Bromodomain	Back alignment and domain information

>gnl\|CDD\|99951 cd05520, Bromo_polybromo_III, Bromodomain, polybromo repeat III	Back alignment and domain information

>gnl\|CDD\|99950 cd05519, Bromo_SNF2, Bromodomain, SNF2-like subfamily, specific to fungi	Back alignment and domain information

>gnl\|CDD\|99955 cd05525, Bromo_ASH1, Bromodomain; ASH1_like sub-family	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		1051
KOG0644		1113	consensus Uncharacterized conserved protein, conta	100.0
PF06507		83	Auxin_resp: Auxin response factor; InterPro: IPR01	99.8
cd05529		128	Bromo_WDR9_I_like Bromodomain; WDR9 repeat I_like	99.78
cd05497		107	Bromo_Brdt_I_like Bromodomain, Brdt_like subfamily	99.73
cd05495		108	Bromo_cbp_like Bromodomain, cbp_like subfamily. Cb	99.73
cd05507		104	Bromo_brd8_like Bromodomain, brd8_like subgroup. I	99.69
cd05508		99	Bromo_RACK7 Bromodomain, RACK7_like subfamily. RAC	99.69
cd05509		101	Bromo_gcn5_like Bromodomain; Gcn5_like subfamily.	99.69
cd05496		119	Bromo_WDR9_II Bromodomain; WDR9 repeat II_like sub	99.69
cd05504		115	Bromo_Acf1_like Bromodomain; Acf1_like or BAZ1A_li	99.69
cd05505		97	Bromo_WSTF_like Bromodomain; Williams syndrome tra	99.68
cd05510		112	Bromo_SPT7_like Bromodomain; SPT7_like subfamily.	99.68
cd05516		107	Bromo_SNF2L2 Bromodomain, SNF2L2-like subfamily, s	99.68
cd05524		113	Bromo_polybromo_I Bromodomain, polybromo repeat I.	99.66
cd05502		109	Bromo_tif1_like Bromodomain; tif1_like subfamily.	99.66
cd05500		103	Bromo_BDF1_2_I Bromodomain. BDF1/BDF2 like subfami	99.66
cd05511		112	Bromo_TFIID Bromodomain, TFIID-like subfamily. Hum	99.66
cd05517		103	Bromo_polybromo_II Bromodomain, polybromo repeat I	99.66
smart00297		107	BROMO bromo domain.	99.65
cd05515		105	Bromo_polybromo_V Bromodomain, polybromo repeat V.	99.65
cd05520		103	Bromo_polybromo_III Bromodomain, polybromo repeat	99.65
cd05501		102	Bromo_SP100C_like Bromodomain, SP100C_like subfami	99.64
cd05518		103	Bromo_polybromo_IV Bromodomain, polybromo repeat I	99.64
cd05503		97	Bromo_BAZ2A_B_like Bromodomain, BAZ2A/BAZ2B_like s	99.64
cd05525		106	Bromo_ASH1 Bromodomain; ASH1_like sub-family. ASH1	99.63
cd05519		103	Bromo_SNF2 Bromodomain, SNF2-like subfamily, speci	99.63
cd05528		112	Bromo_AAA Bromodomain; sub-family co-occurring wit	99.62
cd05513		98	Bromo_brd7_like Bromodomain, brd7_like subgroup. T	99.62
cd05499		102	Bromo_BDF1_2_II Bromodomain. BDF1/BDF2 like subfam	99.61
cd05521		106	Bromo_Rsc1_2_I Bromodomain, repeat I in Rsc1/2_lik	99.61
cd05512		98	Bromo_brd1_like Bromodomain; brd1_like subfamily.	99.61
KOG1474		640	consensus Transcription initiation factor TFIID, s	99.6
cd05506		99	Bromo_plant1 Bromodomain, uncharacterized subfamil	99.57
cd05498		102	Bromo_Brdt_II_like Bromodomain, Brdt_like subfamil	99.56
cd05522		104	Bromo_Rsc1_2_II Bromodomain, repeat II in Rsc1/2_l	99.56
cd05492		109	Bromo_ZMYND11 Bromodomain; ZMYND11_like sub-family	99.52
cd04369		99	Bromodomain Bromodomain. Bromodomains are found in	99.5
PF00439		84	Bromodomain: Bromodomain; InterPro: IPR001487 Brom	99.47
cd05526		110	Bromo_polybromo_VI Bromodomain, polybromo repeat V	99.4
COG5076		371	Transcription factor involved in chromatin remodel	99.35
KOG1245		1404	consensus Chromatin remodeling complex WSTF-ISWI,	98.99
cd05491		119	Bromo_TBP7_like Bromodomain; TBP7_like subfamily,	98.83
KOG1472		720	consensus Histone acetyltransferase SAGA/ADA, cata	98.65
KOG0955		1051	consensus PHD finger protein BR140/LIN-49 [General	98.31
KOG1827		629	consensus Chromatin remodeling complex RSC, subuni	98.13
KOG0008		1563	consensus Transcription initiation factor TFIID, s	98.06
KOG0386		1157	consensus Chromatin remodeling complex SWI/SNF, co	97.95
cd05494		114	Bromodomain_1 Bromodomain; uncharacterized subfami	97.45
KOG1472		720	consensus Histone acetyltransferase SAGA/ADA, cata	97.38
KOG1474		640	consensus Transcription initiation factor TFIID, s	97.38
KOG1828		418	consensus IRF-2-binding protein CELTIX-1, contains	97.1
KOG0008		1563	consensus Transcription initiation factor TFIID, s	97.02
KOG1828		418	consensus IRF-2-binding protein CELTIX-1, contains	96.94
KOG0644		1113	consensus Uncharacterized conserved protein, conta	94.89
COG5076		371	Transcription factor involved in chromatin remodel	93.5
cd05493		131	Bromo_ALL-1 Bromodomain, ALL-1 like proteins. ALL-	92.55
smart00333		57	TUDOR Tudor domain. Domain of unknown function pre	88.49
smart00743		61	Agenet Tudor-like domain present in plant sequence	88.42

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]	Back alignment and domain information

Probab=100.00  E-value=7.7e-93  Score=815.23  Aligned_cols=270  Identities=60%  Similarity=1.102  Sum_probs=251.0

Q ss_pred             CCCccccCccccccCcccccccccCCCCCCCCCCCCeEEEechhhHHHHhhcCCCCCCCccccC-CCcccceeEEEEeeE
Q 001569          724 SSPIDRRKTHQSLRKGSWLMLSTHEEGSRYIPQLGDEVVYLRQGHQEYINYSGSREVGPWITVK-GNIRAVEFCKVESLE  802 (1051)
Q Consensus       724 ~~~~~~~~~~~~~~~~sWL~~t~~~~~spYVPQ~GDEVVYFRQGHeeYleavr~~e~~PW~~lk-~~Lr~~E~CKVvgIk  802 (1051)
                      ..|++..++++.+.+++||++++|+.+|+|||||||||+|||||||+||++++.++. +|+++. ..+.++|.|+|+.|.
T Consensus       843 p~~~~~~~~~~~~~~~sWltls~hee~~ryipQmgDEViyfrQghqeyl~~~~~n~~-~~~~~~p~~~~~v~~~kv~kl~  921 (1113)
T KOG0644|consen  843 PAPLENMKPQQLFEKPSWLTLSIHEEGCRYIPQMGDEVIYFRQGHQEYLEAVRLNNI-ELNNKEPWNKMAVEICKVEKLV  921 (1113)
T ss_pred             CccccccchhhhcCCceeEEeehhhcCCcccccccceeehhhhhhHHHHhhhhhccc-cccccCcccccchhhheeeeee
Confidence            347777778999999999999999999999999999999999999999999987654 444322 347789999999999


Q ss_pred             EEecCCCCCceeeeEEEEecCCCCCCCCeEEEEcCCCCCCCceeeehhhHHHHHccCCCCCCeEEEEecCCCCCCCcEEE
Q 001569          803 YATASGSGDSCCKMTLKFIDPTSSVSNMTFRLTLPEVTGFPDFLVERTRFDAAIQRNWTCRDKCKVWWKNESDEDGSWWD  882 (1051)
Q Consensus       803 Yei~Pps~~~cckLkL~~LdPaSg~tg~~FsV~Y~p~~d~pDFLVlr~rYd~Am~rnWsvGDRFrm~fe~Ed~idgsWw~  882 (1051)
                      |..+|+++++||+|+|+||||++.+..+.|+|+||+|.++|||||++++|++|+++||+.||+|++||.++..++|.||+
T Consensus       922 ~~~y~~~~~s~c~m~l~~idp~s~~~~k~F~ltlpdlv~fpDFlV~rsrYd~AiQrnW~~~d~crvwwrda~~e~g~WWe 1001 (1113)
T KOG0644|consen  922 YITYPGSGDSCCKMKLAVIDPASKLMDKSFKLTLPDLVTFPDFLVERSRYDAAIQRNWTCRDKCRVWWRDAGEEDGAWWE 1001 (1113)
T ss_pred             eeeccCCCcchheeeeeeecchhhhhhccceeecccccCcchhhhhhhhHHHHHhhccccccceeEEEccCCCcCCceee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999998888999999


Q ss_pred             EEEEEecCCCCCCCCCCCceeEEEEcCCCCccccCCCCccccCCCCCCCCCCCHHHHHHHHHHHHHHHHhhhcchhhhhc
Q 001569          883 GRVLSVKPKSSEFPDSPWERYTVQYKTEPTETHLHSPWELFDSDTQWEQPRIDDDNRNKLLSAFAKLEQSANRVQDQYGV  962 (1051)
Q Consensus       883 GtIvsV~p~dp~wPdSPWe~L~VrWDn~~sE~eRVSPWEIEpi~~p~e~P~id~E~r~kLLsal~klees~~r~qDryGI  962 (1051)
                      |+|.+++|++|+||+|||+||.|+||++  |.+.|||||+++++         +                          
T Consensus      1002 G~ils~~pksp~fpdSpwery~v~~~~~--e~~~~spwe~~~i~---------d-------------------------- 1044 (1113)
T KOG0644|consen 1002 GRILSVKPKSPDFPDSPWERYIVRYDNT--ETELHSPWEMEPIP---------D-------------------------- 1044 (1113)
T ss_pred             eeeeeccCCCCCCCCCcceeEEEEecCC--cccccCccccCCCc---------c--------------------------
Confidence            9999999999999999999999999998  99999999999753         2                          


Q ss_pred             ccccccccCCcccccCCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHHhcC
Q 001569          963 QKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKRLSDLVTRTLSSL 1041 (1051)
Q Consensus       963 ~~L~~l~e~PDY~~iI~~PMDLsTIr~RLeN~~YRsieaf~~DVrLI~sNA~tYNep~S~I~k~Ak~L~dvF~~~Lk~L 1041 (1051)
                                +|++.++.|+.|+.|+.||||+|||++++|.+||..|+.||++|++-+..++.+|..|..||.+.|.++
T Consensus      1045 ----------e~~~~fpvpls~evi~~rlEn~yYrs~e~~~hdvs~mlsnae~~fg~~~~~~~ki~~l~~~~~~Tlpk~ 1113 (1113)
T KOG0644|consen 1045 ----------EVDNRFPVPLSLEVIRSRLENNYYRSQEALRHDVSVMLSNAETFFGRNKNVAIKISFLSPWFDRTLPKL 1113 (1113)
T ss_pred             ----------ccCCCCCCcccHHHHHHHHHhhhhhhhHhhhcchhhhhcccceeecccccHHHHhhhcchhhhhhccCC
Confidence                      156789999999999999999999999999999999999999999999999999999999999998654

>PF06507 Auxin_resp: Auxin response factor; InterPro: IPR010525 This pattern represents a conserved region of auxin-responsive transcription factors	Back alignment and domain information

>cd05529 Bromo_WDR9_I_like Bromodomain; WDR9 repeat I_like subfamily	Back alignment and domain information

>cd05497 Bromo_Brdt_I_like Bromodomain, Brdt_like subfamily, repeat I	Back alignment and domain information

>cd05495 Bromo_cbp_like Bromodomain, cbp_like subfamily	Back alignment and domain information

>cd05507 Bromo_brd8_like Bromodomain, brd8_like subgroup	Back alignment and domain information

>cd05508 Bromo_RACK7 Bromodomain, RACK7_like subfamily	Back alignment and domain information

>cd05509 Bromo_gcn5_like Bromodomain; Gcn5_like subfamily	Back alignment and domain information

>cd05496 Bromo_WDR9_II Bromodomain; WDR9 repeat II_like subfamily	Back alignment and domain information

>cd05504 Bromo_Acf1_like Bromodomain; Acf1_like or BAZ1A_like subfamily	Back alignment and domain information

>cd05505 Bromo_WSTF_like Bromodomain; Williams syndrome transcription factor-like subfamily (WSTF-like)	Back alignment and domain information

>cd05510 Bromo_SPT7_like Bromodomain; SPT7_like subfamily	Back alignment and domain information

>cd05516 Bromo_SNF2L2 Bromodomain, SNF2L2-like subfamily, specific to animals	Back alignment and domain information

>cd05524 Bromo_polybromo_I Bromodomain, polybromo repeat I	Back alignment and domain information

>cd05502 Bromo_tif1_like Bromodomain; tif1_like subfamily	Back alignment and domain information

>cd05500 Bromo_BDF1_2_I Bromodomain	Back alignment and domain information

>cd05511 Bromo_TFIID Bromodomain, TFIID-like subfamily	Back alignment and domain information

>cd05517 Bromo_polybromo_II Bromodomain, polybromo repeat II	Back alignment and domain information

>smart00297 BROMO bromo domain	Back alignment and domain information

>cd05515 Bromo_polybromo_V Bromodomain, polybromo repeat V	Back alignment and domain information

>cd05520 Bromo_polybromo_III Bromodomain, polybromo repeat III	Back alignment and domain information

>cd05501 Bromo_SP100C_like Bromodomain, SP100C_like subfamily	Back alignment and domain information

>cd05518 Bromo_polybromo_IV Bromodomain, polybromo repeat IV	Back alignment and domain information

>cd05503 Bromo_BAZ2A_B_like Bromodomain, BAZ2A/BAZ2B_like subfamily	Back alignment and domain information

>cd05525 Bromo_ASH1 Bromodomain; ASH1_like sub-family	Back alignment and domain information

>cd05519 Bromo_SNF2 Bromodomain, SNF2-like subfamily, specific to fungi	Back alignment and domain information

>cd05528 Bromo_AAA Bromodomain; sub-family co-occurring with AAA domains	Back alignment and domain information

>cd05513 Bromo_brd7_like Bromodomain, brd7_like subgroup	Back alignment and domain information

>cd05499 Bromo_BDF1_2_II Bromodomain	Back alignment and domain information

>cd05521 Bromo_Rsc1_2_I Bromodomain, repeat I in Rsc1/2_like subfamily, specific to fungi	Back alignment and domain information

>cd05512 Bromo_brd1_like Bromodomain; brd1_like subfamily	Back alignment and domain information

>KOG1474 consensus Transcription initiation factor TFIID, subunit BDF1 and related bromodomain proteins [Transcription]	Back alignment and domain information

>cd05506 Bromo_plant1 Bromodomain, uncharacterized subfamily specific to plants	Back alignment and domain information

>cd05498 Bromo_Brdt_II_like Bromodomain, Brdt_like subfamily, repeat II	Back alignment and domain information

>cd05522 Bromo_Rsc1_2_II Bromodomain, repeat II in Rsc1/2_like subfamily, specific to fungi	Back alignment and domain information

>cd05492 Bromo_ZMYND11 Bromodomain; ZMYND11_like sub-family	Back alignment and domain information

>cd04369 Bromodomain Bromodomain	Back alignment and domain information

>PF00439 Bromodomain: Bromodomain; InterPro: IPR001487 Bromodomains are found in a variety of mammalian, invertebrate and yeast DNA-binding proteins []	Back alignment and domain information

>cd05526 Bromo_polybromo_VI Bromodomain, polybromo repeat VI	Back alignment and domain information

>COG5076 Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription]	Back alignment and domain information

>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]	Back alignment and domain information

>cd05491 Bromo_TBP7_like Bromodomain; TBP7_like subfamily, limited to fungi	Back alignment and domain information

>KOG1472 consensus Histone acetyltransferase SAGA/ADA, catalytic subunit PCAF/GCN5 and related proteins [Chromatin structure and dynamics; Transcription]	Back alignment and domain information

>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]	Back alignment and domain information

>KOG1827 consensus Chromatin remodeling complex RSC, subunit RSC1/Polybromo and related proteins [Chromatin structure and dynamics; Transcription]	Back alignment and domain information

>KOG0008 consensus Transcription initiation factor TFIID, subunit TAF1 [Transcription]	Back alignment and domain information

>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]	Back alignment and domain information

>cd05494 Bromodomain_1 Bromodomain; uncharacterized subfamily	Back alignment and domain information

>KOG1472 consensus Histone acetyltransferase SAGA/ADA, catalytic subunit PCAF/GCN5 and related proteins [Chromatin structure and dynamics; Transcription]	Back alignment and domain information

>KOG1474 consensus Transcription initiation factor TFIID, subunit BDF1 and related bromodomain proteins [Transcription]	Back alignment and domain information

>KOG1828 consensus IRF-2-binding protein CELTIX-1, contains BROMO domain [Transcription]	Back alignment and domain information

>KOG0008 consensus Transcription initiation factor TFIID, subunit TAF1 [Transcription]	Back alignment and domain information

>KOG1828 consensus IRF-2-binding protein CELTIX-1, contains BROMO domain [Transcription]	Back alignment and domain information

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]	Back alignment and domain information

>COG5076 Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription]	Back alignment and domain information

>cd05493 Bromo_ALL-1 Bromodomain, ALL-1 like proteins	Back alignment and domain information

>smart00333 TUDOR Tudor domain	Back alignment and domain information

>smart00743 Agenet Tudor-like domain present in plant sequences	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		1051
3mqm_A		126	Probable histone-lysine N-methyltransferase ASH1L;	5e-06
3iu5_A		116	Protein polybromo-1; PB1, polybromo 1 isoform 1, B	8e-06
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-06
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-05
3k2j_A		130	Protein polybromo-1; PB1, polybromo 1 isoform 1, B	8e-06
3ljw_A		120	Protein polybromo-1; alpha helix, alternative spli	2e-05
2dat_A		123	Possible global transcription activator SNF2L2; br	3e-05
3mb4_A		124	Protein polybromo-1; PB1, polybromo 1 isoform 1, B	5e-05
3iu6_A		147	Protein polybromo-1; PB1, polybromo 1 isoform 1, B	8e-05
2grc_A		129	Probable global transcription activator SNF2L4; br	2e-04
3tlp_A		150	Protein polybromo-1; PB1, polybromo 1 isoform 1, B	3e-04
2r0y_A		311	Chromatin structure-remodeling complex protein RSC	8e-04
3aad_A		292	Transcription initiation factor TFIID subunit 1; p	9e-04

>3mqm_A Probable histone-lysine N-methyltransferase ASH1L; KIAA1420, absent small and homeotic disks prote homolog, lysine N-methyltransferase 2H, KMT2H; 2.54A {Homo sapiens} Length = 126	Back alignment and structure

 Score = 45.8 bits (109), Expect = 5e-06
 Identities = 20/71 (28%), Positives = 32/71 (45%)

Query: 981  PLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKRLSDLVTRTLSS 1040
            PL L  I+ ++   YY+ +EA   D+  +  NAE Y+GR + +   + RL          
Sbjct: 55   PLDLITIEKQILTGYYKTVEAFDADMLKVFRNAEKYYGRKSPVGRDVCRLRKAYYNARHE 114

Query: 1041 LKAPQFHDVGQ 1051
              A     VG+
Sbjct: 115  ASAQIDEIVGE 125

PyMOL of 3mqm

>3iu5_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; 1.63A {Homo sapiens} Length = 116	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>3k2j_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo01D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.20A {Homo sapiens} Length = 130	Back alignment and structure

>3ljw_A Protein polybromo-1; alpha helix, alternative splicing, bromodomain, chromatin RE DNA-binding, nucleus, phosphoprotein, transcription; 1.50A {Homo sapiens} PDB: 2ktb_B* 3hmf_A Length = 120	Back alignment and structure

>2dat_A Possible global transcription activator SNF2L2; bromodomain, all alpha protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 123	Back alignment and structure

>3mb4_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 1.66A {Homo sapiens} PDB: 3g0j_A 2yqd_A Length = 124	Back alignment and structure

>3iu6_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; HET: OCS; 1.79A {Homo sapiens} Length = 147	Back alignment and structure

>2grc_A Probable global transcription activator SNF2L4; bromodomain, BRG1, chromatin remodelling, acely-lysine binding, protein-protein interactions; 1.50A {Homo sapiens} PDB: 3uvd_A 2h60_A Length = 129	Back alignment and structure

>3tlp_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.13A {Homo sapiens} Length = 150	Back alignment and structure

>2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain, chromatin, remodeler, RSC, acetylation, transcription, chromatin regulator, nucleus, phosphorylation; HET: ALY; 1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A Length = 311	Back alignment and structure

>3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens} Length = 292	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		1051
d1wuma1		118	a.29.2.1 (A:715-832) P300/CAF histone acetyltransf	3e-06
d3d7ca1		102	a.29.2.1 (A:731-832) GCN5 {Human (Homo sapiens) [T	4e-05
d1eqfa1		139	a.29.2.1 (A:1359-1497) TAFII250 double bromodomain	4e-04

>d1wuma1 a.29.2.1 (A:715-832) P300/CAF histone acetyltransferase bromodomain {Human (Homo sapiens) [TaxId: 9606]} Length = 118	Back information, alignment and structure


class: All alpha proteins
fold: Bromodomain-like
superfamily: Bromodomain
family: Bromodomain
domain: P300/CAF histone acetyltransferase bromodomain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.0 bits (106), Expect = 3e-06
 Identities = 17/113 (15%), Positives = 40/113 (35%), Gaps = 4/113 (3%)

Query: 930  EQPRIDDDNRNKLLSAFAKLEQSANRVQDQYGVQKLKQVSQKTNFTNRFPVPLSLDVIQS 989
            ++PR    + ++L S    + Q     Q  +   +  + ++   +      P+ L  +  
Sbjct: 6    KEPR----DPDQLYSTLKSILQQVKSHQSAWPFMEPVKRTEAPGYYEVIRFPMDLKTMSE 61

Query: 990  RLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKRLSDLVTRTLSSLK 1042
            RL+N YY   +    D+  + +N + Y    ++       L       +    
Sbjct: 62   RLKNRYYVSKKLFMADLQRVFTNCKEYNPPESEYYKCANILEKFFFSKIKEAG 114

PyMOL of d1wuma1

>d3d7ca1 a.29.2.1 (A:731-832) GCN5 {Human (Homo sapiens) [TaxId: 9606]} Length = 102	Back information, alignment and structure

>d1eqfa1 a.29.2.1 (A:1359-1497) TAFII250 double bromodomain module {Human (Homo sapiens) [TaxId: 9606]} Length = 139	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		1051
d3d7ca1		102	GCN5 {Human (Homo sapiens) [TaxId: 9606]}	99.74
d1eqfa2		128	TAFII250 double bromodomain module {Human (Homo sa	99.73
d1wuma1		118	P300/CAF histone acetyltransferase bromodomain {Hu	99.73
d1eqfa1		139	TAFII250 double bromodomain module {Human (Homo sa	99.72
d3dwya1		114	CREB-binding protein, CBP {Human (Homo sapiens) [T	99.7
d1e6ia_		111	GCN5 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.7
d1mhna_		59	Survival motor neuron protein 1, smn {Human (Homo	91.04

>d3d7ca1 a.29.2.1 (A:731-832) GCN5 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

class: All alpha proteins
fold: Bromodomain-like
superfamily: Bromodomain
family: Bromodomain
domain: GCN5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=1.4e-17  Score=134.32  Aligned_cols=98  Identities=14%  Similarity=0.265  Sum_probs=82.9

Q ss_pred             HHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCC
Q ss_conf             99999888999984200101110012233225884103299999989999999739989999999999999973200079
Q 001569          939 RNKLLSAFAKLEQSANRVQDQYGVQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFG 1018 (1051)
Q Consensus       939 r~kLls~l~klees~~r~qDryGI~~L~~l~e~PDY~~iIk~PMDLsTIk~RLeN~~YRsieal~~DVrLI~sNA~tFNe 1018 (1051)
                      ...|...+..+.    .+.+...+..+++..++|+|+.+|+.||||+||++||+++.|+++++|..||++|+.||.+||+
T Consensus         4 ~~~l~~il~~l~----~~~~s~~F~~pv~~~~~pdY~~~I~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~   79 (102)
T d3d7ca1           4 YTTLKNLLAQIK----SHPSAWPFMEPVKKSEAPDYYEVIRFPIDLKTMTERLRSRYYVTRKLFVADLQRVIANCREYNP   79 (102)
T ss_dssp             HHHHHHHHHHHH----HSGGGGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHH----HCCCCCCCCCCCCHHHCCCHHHHCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf             999999999998----0999772278899666767898808946899999876067637799999999999999999879


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHC
Q ss_conf             9999999999999999999933
Q 001569         1019 RNTDLSTKIKRLSDLVTRTLSS 1040 (1051)
Q Consensus      1019 p~S~I~k~Ak~Lsevf~~~Lkk 1040 (1051)
                      ++|.++++|..|+++|.+.|++
T Consensus        80 ~~s~~~~~A~~l~~~f~~~~ke  101 (102)
T d3d7ca1          80 PDSEYCRCASALEKFFYFKLKE  101 (102)
T ss_dssp             TTSHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHC
T ss_conf             9999999999999999999736

PyMOL of d3d7ca1

>d1eqfa2 a.29.2.1 (A:1498-1625) TAFII250 double bromodomain module {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1wuma1 a.29.2.1 (A:715-832) P300/CAF histone acetyltransferase bromodomain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1eqfa1 a.29.2.1 (A:1359-1497) TAFII250 double bromodomain module {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d3dwya1 a.29.2.1 (A:1084-1197) CREB-binding protein, CBP {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1e6ia_ a.29.2.1 (A:) GCN5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1mhna_ b.34.9.1 (A:) Survival motor neuron protein 1, smn {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure